Psyllid ID: psy15127

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630---
Protein Sequence
MVTHLDTNHAHPMSSPRAEIEPATRTNRVSISGDPGFDSRRSRSIFGSVLGARGALSDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD
Secondary Structure (PSIPRED)
cEEEEEccccccccccccEEEEcccccEEEEccccEEEEEEEEEccccEEEEcccccccccEEEEEEccccccccccccEEEEEcccEEEEEEEEccccccEEEEEEcccccccccEEEcccccEEEccccccccEEEEEEEEEcccEEEEEEEEEEEEEccccccccccEEEEccccEEEEEEccccccccEEEEEEccEEcccccccEEEccccEEEEEEEcccEEEEEEEEccccccEEEccccEEEEEcccEEEEEEEEEEEccccEEEEEEccEEEEEccccccccEEEccccEEEEccccccccEEEEEEEEEccccEEEEEEEEEEEccccccccEEEccccccccccccEEEEccccccccEEEEEEEEcccccEEEEEEEEEEccccccccccccccccccccccccEEEEEEccEEEEEEcccccccccccccEEEEEEEEEccccccEEEEEEEccccEEEEccccccccEEEEEEEEccccccccccccccEEEcccccccccccHHHHHHHcccEEEEEEEEEEcccccEEEEEEEcccccccccccccccccccEEEEEEcccccccEEEEEcccEEEEEEEEEcccccEEEEcccccccEEEEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccEEcccccccccccccccccccccccEEEEEccEEEEEccccccccEEEEEEccccccEccEEEEEEEccccEEEccccEEEEccccEEEEEEcccccccEEEEEEcccccccccEEEEcccEEEEEccccccccEEEEEEEccccEEEEcEEEEEEEcccccccccccEEEEcccEEEEEEcccccccccEEEEEEccccccccccEEEEEcccEEEEEEEccccccEEEEEEEEccccEEccccccEEEcccccEEEEEEcccccccEEEEEEccccccccccccccEEEEccccEEEEEEcccccccEEEEEEEEccccEEEEEEEEEEccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEEccccEEEEEEEEEEccccccccccccccccccccccccEEEEccccEEEEEEEcccccccccccEEEEEEEEEEccccccEEEEEEcccccEEEEEccccccEEEEEEEEEcccccccccccEEEEcccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccEccEEEEEEEEEcccccccccccEEEEEEEEEEEccccEEEEEEccccccEEEEEEEEEcccccccccc
Coil and Loop (DISEMBL)
mvthldtnhahpmsspraeiepatrtnrvsisgdpgfdsrrsrsIFGSVlgargalsdDQWKLIAKEalikpfpisepsdatvlsgSVVEFVCrvggdplptilwrrddgkmptgrakilddrslqienvgpqdeglyicdvENLVGSISLRASLTVHLLrddfraepkdtrvasgetallecgppkgqpeptlhwkkngqfidlessksldlsrrtlgwlrvrplywnvarpranlnpryIGRKMASLLIWnhprvnrlscfaegsplpsvfwtqegsqvlmfpgnayghlhvtqegtlriqgvqkedaGFFVCSALSVAGSTTVRAFLQVREFcvlpkgtftlgqpnlatgnsdLRRIACDlretdsglytctassesgetswsaslsveprpgphavhrmpdsglfpgppaapvilnttrgsvtlgwgepeprgggvapvIGYTVEYFSSDLQTGWVVAAHRitstsitvsdlkpdtsYMFIVRAEnshglgipspvspitrtlglnslvPQHLLDEARARLGTKVVnlreliptastAVRITWevswgsvpqHLLDEARARLGTKVVnlreliptasTAVRITWEKYNMATVMNAATTTSYTVTHLRkftkyefflvpffktvegarld
Flexible Loop (DISEMBL)
mvthldtnhahpmsspraeiepatrtnrvsisgdpgfdsrrsrSIFGSVLGARGALSDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCrvggdplptilwrrddgkmptgrakilddrslqIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRddfraepkdtrvasgetallecgppkgqpeptlHWKKNGQFIdlessksldlsrrtlgwlrvrplywnvarpranlnprYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTftlgqpnlatgnsdLRRIACDLRETDSGLYTctassesgetswsasLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRItstsitvsdlkpdTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGtkvvnlreliptastavriTWEKYNMATVMNAATTTSYTVTHLRKFTKYEfflvpffktvegarld
Low Complexity Region (SEG)
MVTHLDTNHAHPMSSPRAEIEPATRTNRVSISGDPGFDSRRSRSIFGSVLGARGALSDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCtassesgetswsaslsVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYnmatvmnaatttSYTVTHLRKFTKYEFFLVPFFKTVEGARLD
Disordered region (IsUnstruct)
********************************************IFGSVLGARGALSDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK****RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDF*******************************WKKNGQFIDL****SLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTC***************************************************VTLGWGE***RGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVR*********************LNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTV******
Disordered Region (DISOPRED)
MVTHLD*NHA***************TNRVSISGDPGFDSRRSRSIFGSVLGARGA****QWKLIAKEALIKPFPISE*****VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT*RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID****************LRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGS**************VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHA*********************TTRGSVT****************IGYTVEYFSSDL**********ITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSP*****************************VVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFK*V******
Disordered Region (DISEMBL)
************************RTNRVSISGDPGFDSRRSRSIFGSVLGARGALSDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTC***********************HAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD
Disordered Region (DISPRO)
MVTHLDTNHAHPMSSPRAEIEPATRTNRVSISGDPGFDSRRSRSIFGSVLGARGALSDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPG**********GLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTL*******************TKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKT*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVTHLDTNHAHPMSSPRAEIEPATRTNRVSISGDPGFDSRRSRSIFGSVLGARGALSDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	633	2.2.26 [Sep-21-2011]
G5EBF1	1273	Protein sax-3 OS=Caenorha	yes	N/A	0.812	0.403	0.303	8e-58
Q7TPD3	1470	Roundabout homolog 2 OS=M	yes	N/A	0.872	0.375	0.285	1e-52
Q9HCK4	1378	Roundabout homolog 2 OS=H	yes	N/A	0.881	0.404	0.291	5e-51
O89026	1612	Roundabout homolog 1 OS=M	no	N/A	0.835	0.328	0.273	1e-47
O55005	1651	Roundabout homolog 1 OS=R	no	N/A	0.837	0.321	0.264	5e-47
Q9Y6N7	1651	Roundabout homolog 1 OS=H	no	N/A	0.835	0.320	0.270	3e-46
Q96MS0	1386	Roundabout homolog 3 OS=H	no	N/A	0.685	0.313	0.288	8e-40
Q9Z2I4	1366	Roundabout homolog 3 OS=M	no	N/A	0.679	0.314	0.272	9e-35
P11627	1260	Neural cell adhesion mole	no	N/A	0.636	0.319	0.271	3e-26
Q05695	1259	Neural cell adhesion mole	no	N/A	0.636	0.320	0.273	1e-25

>sp|G5EBF1|SAX3_CAEEL Protein sax-3 OS=Caenorhabditis elegans GN=sax-3 PE=2 SV=1

 Score =  225 bits (574), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 192/632 (30%), Positives = 272/632 (43%), Gaps = 118/632 (18%)

Query: 78  PSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGK-----MPTGRAKILDDRSLQIENVG 131
           P     L G +    C    G P P + WR+DD +     MP  R  +  D +L I+ V 
Sbjct: 139 PRTVQALGGEMAVLECSPPRGFPEPVVSWRKDDKELRIQDMP--RYTLHSDGNLIIDPVD 196

Query: 132 PQDEGLYICDVENLVGS-ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQP 190
             D G Y C   N+VG  +S  A L+V   +  F  EPKD  V  G   L +C    G P
Sbjct: 197 RSDSGTYQCVANNMVGERVSNPARLSV-FEKPKFEQEPKDMTVDVGAAVLFDCRV-TGDP 254

Query: 191 EPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPL----YWNVARPRANLNPRYIGRKM 246
           +P + WK+  + + + +   +    R L   RV+P     Y   AR     NP       
Sbjct: 255 QPQITWKRKNEPMPV-TRAYIAKDNRGLRIERVQPSDEGEYVCYAR-----NPAGTLEAS 308

Query: 247 ASLLIWNHPRVNR--------------LSCFAEGSPLPSVFWTQEGSQVLMFPG--NAYG 290
           A L +   P                    C   G P P+ FW++EG Q L+FP   +A G
Sbjct: 309 AHLRVQAPPSFQTKPADQSVPAGGTATFECTLVGQPSPAYFWSKEGQQDLLFPSYVSADG 368

Query: 291 HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVL------PKGTFT 344
              V+  GTL I+ V++ D G +VC+ ++ AGS+  +A L+V    V       P  T  
Sbjct: 369 RTKVSPTGTLTIEEVRQVDEGAYVCAGMNSAGSSLSKAALKVTTKAVTGNTPAKPPPTIE 428

Query: 345 LGQPN--LATGNSDL--------------------------RRIA---------CDLRET 367
            G  N  L  G+S +                           RI+          DL++ 
Sbjct: 429 HGHQNQTLMVGSSAILPCQASGKPTPGISWLRDGLPIDITDSRISQHSTGSLHIADLKKP 488

Query: 368 DSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVT 427
           D+G+YTC A +E GE++WSASL+VE         RMPD   FP  P  P+I+N T   V 
Sbjct: 489 DTGVYTCIAKNEDGESTWSASLTVEDHTSNAQFVRMPDPSNFPSSPTQPIIVNVTDTEVE 548

Query: 428 LGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVR 487
           L W  P   G G  P+ GY ++Y+S DL   W      + ST   +  LKP  SYMF++R
Sbjct: 549 LHWNAPSTSGAG--PITGYIIQYYSPDLGQTWFNIPDYVASTEYRIKGLKPSHSYMFVIR 606

Query: 488 AENSHGLGIPSPVSPITRT---LGLNSLVPQHLLDEARA--RLGT-KVVNLRELIPTAST 541
           AEN  G+G PS  S +  T       +L  ++ +D A A  RL + +++ L E+    ST
Sbjct: 607 AENEKGIGTPSVSSALVTTSKPAAQVALSDKNKMDMAIAEKRLTSEQLIKLEEVKTINST 666

Query: 542 AVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE-----KYNMATV 596
           AVR+ W                     K   L ELI        I W        N    
Sbjct: 667 AVRLFW---------------------KKRKLEELI----DGYYIKWRGPPRTNDNQYVN 701

Query: 597 MNAATTTSYTVTHLRKFTKYEFFLVPFFKTVE 628
           + + +T +Y V++L  FT YEFF++P+   V 
Sbjct: 702 VTSPSTENYVVSNLMPFTNYEFFVIPYHSGVH 733

Required to confine migrating sex myoblasts to the ventral muscle quadrants during their migration through the body and for multiple aspects of sensory, motor, and interneuron axon guidance.
Caenorhabditis elegans (taxid: 6239)

>sp|Q7TPD3|ROBO2_MOUSE Roundabout homolog 2 OS=Mus musculus GN=Robo2 PE=2 SV=2

 Score =  207 bits (528), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 190/665 (28%), Positives = 281/665 (42%), Gaps = 113/665 (16%)

Query: 40  RRSRSIFGS-VLGARGALSDDQWKLIAKE-ALIKPFPISEPSDATVLSGSVVEFVCRV-G 96
           RRS+   GS V  AR  L +   +  + E AL++      P+D  V +G      C+   
Sbjct: 99  RRSKPDEGSYVCVARNYLGEAVSRNASLEVALLRDDFRQNPTDVVVAAGEPAILECQPPR 158

Query: 97  GDPLPTILWRRDDGKMPTGRAKI-LDDRSLQIENVGPQDEGLYICDVENLVGS-ISLRAS 154
           G P PTI W++D  ++     +I +    L I N    D G+Y C   N+VG   S  A 
Sbjct: 159 GHPEPTIYWKKDKVRIDDKEERISIRGGKLMISNTRKSDAGMYTCVGTNMVGERDSDPAE 218

Query: 155 LTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKN--------------- 199
           LTV   R  F   P +  V   E     C   +G P+PT+ WKK+               
Sbjct: 219 LTV-FERPTFLRRPINQVVLEEEAVEFRCQV-QGDPQPTVRWKKDDADLPRGRYDIKDDY 276

Query: 200 ------------GQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMA 247
                       G ++ +  ++   +       +RVRP    VA P+  + PR       
Sbjct: 277 TLRIKKAMSTDEGTYVCIAENRVGKVEASATLTVRVRP----VAPPQFVVRPRD------ 326

Query: 248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAY---GHLHVTQEGTLRIQG 304
              I    R     C  +G+P P+VFW +EGSQ L+FP           V+  G L I  
Sbjct: 327 --QIVAQGRTVTFPCETKGNPQPAVFWQKEGSQNLLFPNQPQQPNSRCSVSPTGDLTITN 384

Query: 305 VQKEDAGFFVCSALSVAGSTTVRAFLQVREFCV--------------------------- 337
           +Q+ DAG+++C AL+VAGS   +A L+V +                              
Sbjct: 385 IQRSDAGYYICQALTVAGSILAKAQLEVTDVLTDRPPPIILQGPINQTLAVDGTALLKCK 444

Query: 338 -----------LPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWS 386
                      L +G   LG+   AT          +LR +D+G YTC A+S SGETSWS
Sbjct: 445 ATGEPLPVISWLKEGFTFLGRDPRATIQDQGTLQIKNLRISDTGTYTCVATSSSGETSWS 504

Query: 387 ASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGY 446
           A L V        + +  D    PGPP+ P + + ++ SVTL W   +P   GV P   Y
Sbjct: 505 AVLDVTESGA--TISKNYDMNDLPGPPSKPQVTDVSKNSVTLSW---QPGTPGVLPASAY 559

Query: 447 TVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
            +E FS  +   W   A+ + +T  TV  L+P+T Y+F+VRA N  GL  PSP+S   RT
Sbjct: 560 IIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRT 619

Query: 507 LGLNSLVPQHLLD--EARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARA 564
             ++   P   +D  + +  LG  VV L   +    T V++TW V     PQ +      
Sbjct: 620 QDISP--PAQGVDHRQVQKELGDVVVRLHNPVVLTPTTVQVTWTVD--RQPQFI------ 669

Query: 565 RLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFF 624
             G +V+  +    T+       W+  +        T  S  + +L+K   YE  + P+F
Sbjct: 670 -QGYRVMYRQ----TSGLQASTVWQNLD----AKVPTERSAVLVNLKKGVTYEIKVRPYF 720

Query: 625 KTVEG 629
              +G
Sbjct: 721 NEFQG 725

Receptor for SLIT2, and probably SLIT1, which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development.

Mus musculus (taxid: 10090)

>sp|Q9HCK4|ROBO2_HUMAN Roundabout homolog 2 OS=Homo sapiens GN=ROBO2 PE=1 SV=2

 Score =  202 bits (515), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 191/655 (29%), Positives = 288/655 (43%), Gaps = 97/655 (14%)

Query: 40  RRSRSIFGS-VLGARGALSDDQWKLIAKE-ALIKPFPISEPSDATVLSGSVVEFVCRVG- 96
           RRS+   GS V  AR  L +   +  + E AL++      P+D  V +G      C+   
Sbjct: 99  RRSKPDEGSYVCVARNYLGEAVSRNASLEVALLRDDFRQNPTDVVVAAGEPAILECQPPR 158

Query: 97  GDPLPTILWRRDDGKMPTGRAKI-LDDRSLQIENVGPQDEGLYICDVENLVGS-ISLRAS 154
           G P PTI W++D  ++     +I +    L I N    D G+Y C   N+VG   S  A 
Sbjct: 159 GHPEPTIYWKKDKVRIDDKEERISIRGGKLMISNTRKSDAGMYTCVGTNMVGERDSDPAE 218

Query: 155 LTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKN------GQFIDLESS 208
           LTV   R  F   P +  V   E     C   +G P+PT+ WKK+      G++ D++  
Sbjct: 219 LTV-FERPTFLRRPINQVVLEEEAVEFRCQV-QGDPQPTVRWKKDDADLPRGRY-DIKDD 275

Query: 209 KSLDLSRRTLGWLRVRPLYWNVARPR-------ANLN----PRYIGRKMASLLIWNHPRV 257
            +L + ++T+        Y  +A  R       A L     P+++ R    ++     R 
Sbjct: 276 YTLRI-KKTMS--TDEGTYMCIAENRVGKMEASATLTVRAPPQFVVRPRDQIVAQG--RT 330

Query: 258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAY---GHLHVTQEGTLRIQGVQKEDAGFFV 314
               C  +G+P P+VFW +EGSQ L+FP           V+  G L I  +Q+ DAG+++
Sbjct: 331 VTFPCETKGNPQPAVFWQKEGSQNLLFPNQPQQPNSRCSVSPTGDLTITNIQRSDAGYYI 390

Query: 315 CSALSVAGSTTVRAFLQVREFCV--------------------------------LP--- 339
           C AL+VAGS   +A L+V +                                   LP   
Sbjct: 391 CQALTVAGSILAKAQLEVTDVLTDRPPPIILQGPANQTLAVDGTALLKCKATGDPLPVIS 450

Query: 340 --KGTFTL-GQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPG 396
             K  FT  G+   AT          +LR +D+G YTC A+S SGETSWSA L V     
Sbjct: 451 WLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTESGA 510

Query: 397 PHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQ 456
              + +  D    PGPP+ P + + T+ SVTL W   +P   G  P   Y +E FS  + 
Sbjct: 511 --TISKNYDLSDLPGPPSKPQVTDVTKNSVTLSW---QPGTPGTLPASAYIIEAFSQSVS 565

Query: 457 TGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQH 516
             W   A+ + +T  TV  L+P+T Y+F+VRA N  GL  PSP+S   RT  ++   P  
Sbjct: 566 NSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDISP--PAQ 623

Query: 517 LLD--EARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLR 574
            +D  + +  LG  +V L   +    T V++TW V     PQ +        G +V+  +
Sbjct: 624 GVDHRQVQKELGDVLVRLHNPVVLTPTTVQVTWTVD--RQPQFI-------QGYRVMYRQ 674

Query: 575 ELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEG 629
               T+      +W+  +        T  S  + +L+K   YE  + P+F   +G
Sbjct: 675 ----TSGLQATSSWQNLD----AKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQG 721

Receptor for SLIT2, and probably SLIT1, which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development.

Homo sapiens (taxid: 9606)

>sp|O89026|ROBO1_MOUSE Roundabout homolog 1 OS=Mus musculus GN=Robo1 PE=1 SV=1

 Score =  191 bits (486), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 167/610 (27%), Positives = 266/610 (43%), Gaps = 81/610 (13%)

Query: 78  PSDATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKMPTGRAKI-LDDRSLQIENVGPQDE 135
           PSD  V  G      C+   G P PTI W++D   +     +I +    L I      D 
Sbjct: 137 PSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDA 196

Query: 136 GLYICDVENLVGS-ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTL 194
           G Y+C   N+VG   S  A LTV L R  F   P +  V   ++A  +C   +G P PT+
Sbjct: 197 GKYVCVGTNMVGERESEVAELTV-LERPSFVKRPSNLAVTVDDSAEFKCEA-RGDPVPTV 254

Query: 195 HWKKN-GQF----IDLESSKSLDLSRRTLG----WLRVRPLYWNVARPRANLN----PRY 241
            W+K+ G+      ++    +L + + T G    +  V       A   A L     P +
Sbjct: 255 RWRKDDGELPKSRYEIRDDHTLKIRKVTAGDMGSYTCVAENMVGKAEASATLTVQEPPHF 314

Query: 242 IGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMF---PGNAYGHLHVTQEG 298
           + +    ++     R     C A G+P P++FW +EGSQ L+F   P  +     V+Q G
Sbjct: 315 VVKPRDQVVALG--RTVTFQCEATGNPQPAIFWRREGSQNLLFSYQPPQSSSRFSVSQTG 372

Query: 299 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREF----------------CVLPKGT 342
            L I  VQ+ D G+++C  L+VAGS   +A+L+V +                  V   GT
Sbjct: 373 DLTITNVQRSDVGYYICQTLNVAGSIITKAYLEVTDVIADRPPPVIRQGPVNQTVAVDGT 432

Query: 343 FTL-----GQPN-----------LATGNSDLRRIACDLRET------DSGLYTCTASSES 380
             L     G P            ++T +S ++++   + +       D+G YTCTAS+ S
Sbjct: 433 LILSCVATGSPAPTILWRKDGVLVSTQDSRIKQLESGVLQIRYAKLGDTGRYTCTASTPS 492

Query: 381 GETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGV 440
           GE +WSA + V+    P    R  D  L P  P+ P + + ++ +VTL W   +P     
Sbjct: 493 GEATWSAYIEVQEFGVPVQPPRPTDPNLIPSAPSKPEVTDVSKNTVTLSW---QPNLNSG 549

Query: 441 APVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPV 500
           A    Y +E FS    + W  AA  + + +  +  LKP+  Y+F+VRA N++G+  PS +
Sbjct: 550 ATPTSYIIEAFSHASGSSWQTAAENVKTETFAIKGLKPNAIYLFLVRAANAYGISDPSQI 609

Query: 501 SPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLD 560
           S   +T  +          + +  LG  V++L      +S++V + W V   S  Q++  
Sbjct: 610 SDPVKTQDVPPTSQGVDHKQVQRELGNVVLHLHNPTILSSSSVEVHWTVDQQS--QYI-- 665

Query: 561 EARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFL 620
                 G K++      P+ ++     W  + + T     T  S  +  LRK   YE   
Sbjct: 666 -----QGYKIL----YRPSGASHGESEWLVFEVRT----PTKNSVVIPDLRKGVNYEIKA 712

Query: 621 VPFFKTVEGA 630
            PFF   +GA
Sbjct: 713 RPFFNEFQGA 722

Receptor for SLIT1 and SLIT2 which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development. In axon growth cones, the silencing of the attractive effect of NTN1 by SLIT2 may require the formation of a ROBO1-DCC complex (By similarity). May be required for lung development.

Mus musculus (taxid: 10090)

>sp|O55005|ROBO1_RAT Roundabout homolog 1 OS=Rattus norvegicus GN=Robo1 PE=1 SV=1

 Score =  189 bits (481), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 161/609 (26%), Positives = 262/609 (43%), Gaps = 79/609 (12%)

Query: 78  PSDATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKMPTGRAKI-LDDRSLQIENVGPQDE 135
           PSD  V  G      C+   G P PTI W++D   +     +I +    L I      D 
Sbjct: 176 PSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDA 235

Query: 136 GLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLH 195
           G Y+C   N+VG    + +    L R  F   P +  V   ++A  +C   +G P PT  
Sbjct: 236 GKYVCVGTNMVGERESKVADVTVLERPSFVKRPSNLAVTVDDSAEFKCEA-RGDPVPTFG 294

Query: 196 WKKN-GQF----IDLESSKSLDLSRRTLG----WLRVRPLYWNVARPRANLN----PRYI 242
           W+K+ G+      ++    +L + + T G    +  V       A   A L     P ++
Sbjct: 295 WRKDDGELPKSRYEIRDDHTLKIRKVTAGDMGSYTCVAENMVGKAEASATLTVQEPPHFV 354

Query: 243 GRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMF---PGNAYGHLHVTQEGT 299
            +    ++     R     C A G+P P++FW +EGSQ L+F   P  +     V+Q G 
Sbjct: 355 VKPRDQVVALG--RTVTFQCEATGNPQPAIFWRREGSQNLLFSYQPPQSSSRFSVSQTGD 412

Query: 300 LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREF----------------CVLPKGTF 343
           L +  VQ+ D G+++C  L+VAGS   +A+L+V +                  V   GT 
Sbjct: 413 LTVTNVQRSDVGYYICQTLNVAGSIITKAYLEVTDVIADRPPPVIRQGPVNQTVAVDGTL 472

Query: 344 TL-----GQPN-----------LATGNSDLRRIACDLRET------DSGLYTCTASSESG 381
           TL     G P            ++T +S ++++   + +       D+G YTCTAS+ SG
Sbjct: 473 TLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLESGVLQIRYAKLGDTGRYTCTASTPSG 532

Query: 382 ETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVA 441
           E +WSA + V+    P    R  D  L P  P+ P + + ++ +VTL W   +P     A
Sbjct: 533 EATWSAYIEVQEFGVPVQPPRPTDPNLIPSAPSKPEVTDVSKNTVTLLW---QPNLNSGA 589

Query: 442 PVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVS 501
               Y +E FS    + W   A  + + +  +  LKP+  Y+F+VRA N++G+  PS +S
Sbjct: 590 TPTSYIIEAFSHASGSSWQTVAENVKTETFAIKGLKPNAIYLFLVRAANAYGISDPSQIS 649

Query: 502 PITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDE 561
              +T  +          + +  LG  V++L      +S++V + W V   S  Q++   
Sbjct: 650 DPVKTQDVPPTTQGVDHKQVQRELGNVVLHLHNPTILSSSSVEVHWTVDQQS--QYI--- 704

Query: 562 ARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLV 621
                G K++      P+ ++     W  + + T     T  S  +  LRK   YE    
Sbjct: 705 ----QGYKIL----YRPSGASHGESEWLVFEVRT----PTKNSVVIPDLRKGVNYEIKAR 752

Query: 622 PFFKTVEGA 630
           PFF   +GA
Sbjct: 753 PFFNEFQGA 761

Receptor for SLIT1 and SLIT2 which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development. In axon growth cones, the silencing of the attractive effect of NTN1 by SLIT2 may require the formation of a ROBO1-DCC complex. May be required for lung development.

Rattus norvegicus (taxid: 10116)

>sp|Q9Y6N7|ROBO1_HUMAN Roundabout homolog 1 OS=Homo sapiens GN=ROBO1 PE=1 SV=1

 Score =  186 bits (473), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 165/610 (27%), Positives = 263/610 (43%), Gaps = 81/610 (13%)

Query: 78  PSDATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKMPTGRAKI-LDDRSLQIENVGPQDE 135
           PSD  V  G      C+   G P PTI W++D   +     +I +    L I      D 
Sbjct: 176 PSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDA 235

Query: 136 GLYICDVENLVGS-ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTL 194
           G Y+C   N+VG   S  A LTV L R  F   P +  V   ++A  +C   +G P PT+
Sbjct: 236 GKYVCVGTNMVGERESEVAELTV-LERPSFVKRPSNLAVTVDDSAEFKC-EARGDPVPTV 293

Query: 195 HWKKN-GQF----IDLESSKSLDLSRRTLG----WLRVRPLYWNVARPRANLN----PRY 241
            W+K+ G+      ++    +L + + T G    +  V       A   A L     P +
Sbjct: 294 RWRKDDGELPKSRYEIRDDHTLKIRKVTAGDMGSYTCVAENMVGKAEASATLTVQEPPHF 353

Query: 242 IGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMF---PGNAYGHLHVTQEG 298
           + +    ++     R     C A G+P P++FW +EGSQ L+F   P  +     V+Q G
Sbjct: 354 VVKPRDQVVALG--RTVTFQCEATGNPQPAIFWRREGSQNLLFSYQPPQSSSRFSVSQTG 411

Query: 299 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREF----------------CVLPKGT 342
            L I  VQ+ D G+++C  L+VAGS   +A+L+V +                  V   GT
Sbjct: 412 DLTITNVQRSDVGYYICQTLNVAGSIITKAYLEVTDVIADRPPPVIRQGPVNQTVAVDGT 471

Query: 343 FTL-----GQPN-----------LATGNSDLRRIACDLRET------DSGLYTCTASSES 380
           F L     G P            ++T +S ++++   + +       D+G YTC AS+ S
Sbjct: 472 FVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPS 531

Query: 381 GETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGV 440
           GE +WSA + V+    P    R  D  L P  P+ P + + +R +VTL W   +P     
Sbjct: 532 GEATWSAYIEVQEFGVPVQPPRPTDPNLIPSAPSKPEVTDVSRNTVTLSW---QPNLNSG 588

Query: 441 APVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPV 500
           A    Y +E FS    + W   A  + + +  +  LKP+  Y+F+VRA N++G+  PS +
Sbjct: 589 ATPTSYIIEAFSHASGSSWQTVAENVKTETSAIKGLKPNAIYLFLVRAANAYGISDPSQI 648

Query: 501 SPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLD 560
           S   +T  +          + +  LG  V++L      +S+++ + W V   S  Q++  
Sbjct: 649 SDPVKTQDVLPTSQGVDHKQVQRELGNAVLHLHNPTVLSSSSIEVHWTVDQQS--QYI-- 704

Query: 561 EARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFL 620
                 G K++      P+ +      W  + + T        S  +  LRK   YE   
Sbjct: 705 -----QGYKIL----YRPSGANHGESDWLVFEVRT----PAKNSVVIPDLRKGVNYEIKA 751

Query: 621 VPFFKTVEGA 630
            PFF   +GA
Sbjct: 752 RPFFNEFQGA 761

Receptor for SLIT1 and SLIT2 which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development. In axon growth cones, the silencing of the attractive effect of NTN1 by SLIT2 may require the formation of a ROBO1-DCC complex. May be required for lung development.

Homo sapiens (taxid: 9606)

>sp|Q96MS0|ROBO3_HUMAN Roundabout homolog 3 OS=Homo sapiens GN=ROBO3 PE=1 SV=2

 Score =  165 bits (418), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 150/520 (28%), Positives = 223/520 (42%), Gaps = 86/520 (16%)

Query: 97  GDPLPTILWRRDDGKMPTGRAKI-LDDRSLQIENVGPQDEGLYICDVENLVGSISLRASL 155
           G P P++ WR+D  ++     +I +    L + +    D G+Y+C   N+ G     A+ 
Sbjct: 192 GHPEPSVSWRKDGARLKEEEGRITIRGGKLMMSHTLKSDAGMYVCVASNMAGERESAAAE 251

Query: 156 TVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKK-NGQF----IDLESSKS 210
            + L R  F   P +  V +       C   KG P P L W+K +G+      ++ S  S
Sbjct: 252 VMVLERPSFLRRPVNQVVLADAPVTFLCEV-KGDPPPRLRWRKEDGELPTGRYEIRSDHS 310

Query: 211 LDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNH--PRVN---------- 258
           L +   +         Y  VA          +GR  AS  +  H  P++           
Sbjct: 311 LWIGHVSA---EDEGTYTCVAE-------NSVGRAEASGSLSVHVPPQLVTQPQDQMAAP 360

Query: 259 ----RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAY---GHLHVTQEGTLRIQGVQKEDAG 311
                  C  +G+P P++FW +EGSQVL+FP  +    G   V+  G L I  VQ+ DAG
Sbjct: 361 GESVAFQCETKGNPPPAIFWQKEGSQVLLFPSQSLQPTGRFSVSPRGQLNITAVQRGDAG 420

Query: 312 FFVCSALSVAGSTTVRAFLQVREFCV--LP--------KGTFTLGQ----PNLATGN--- 354
           ++VC A+SVAGS   +A L+++   +  LP          T  LG     P   TGN   
Sbjct: 421 YYVCQAVSVAGSILAKALLEIKGASLDGLPPVILQGPANQTLVLGSSVWLPCRVTGNPQP 480

Query: 355 -------------SDLR--------RIACDLRETDSGLYTCTASSESGETSWSASLSVEP 393
                         DL+            +++E D G Y+C A S +GE +WS  L +  
Sbjct: 481 SVRWKKDGQWLQGDDLQFKTMANGTLYIANVQEMDMGFYSCVAKSSTGEATWSGWLKMRE 540

Query: 394 ----RPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVE 449
                P P      P     PG P+ PV+   T+ S+TL W +P P+ G  A V  Y +E
Sbjct: 541 DWGVSPDPPTEPSSP-----PGAPSQPVVTEITKNSITLTW-KPNPQTG--AAVTSYVIE 592

Query: 450 YFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGL 509
            FS      W   A  +   + TVS L+P+T Y+F+VRA  + GL  PSPVS   RT   
Sbjct: 593 AFSPAAGNTWRTVADGVQLETHTVSGLQPNTIYLFLVRAVGAWGLSEPSPVSEPVRTQDS 652

Query: 510 NSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEV 549
           +   P       +  L    V L+E I      ++++W V
Sbjct: 653 SPSRPVEDPWRGQQGLAEVAVRLQEPIVLGPRTLQVSWTV 692

Thought to be involved during neural development in axonal navigation at the ventral midline of the neural tube. In spinal chord development plays a role in guiding commissural axons probably by preventing premature sensitivity to Slit proteins thus inhibiting Slit signaling through ROBO1 (By similarity). Required for hindbrain axon midline crossing.

Homo sapiens (taxid: 9606)

>sp|Q9Z2I4|ROBO3_MOUSE Roundabout homolog 3 OS=Mus musculus GN=Robo3 PE=1 SV=2

 Score =  149 bits (375), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 143/524 (27%), Positives = 226/524 (43%), Gaps = 94/524 (17%)

Query: 97  GDPLPTILWRRDDGKMPTGRAKI-LDDRSLQIENVGPQDEGLYICDVENLVGSISLRASL 155
           G P P + W++   K+     +I +    L + +    D G+Y+C   N+ G     A+ 
Sbjct: 192 GHPEPLVTWKKGKIKLKEEEGRITIRGGKLMMSHTFKSDAGMYMCVASNMAGERESGAAE 251

Query: 156 TVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKN------GQFIDLESSK 209
            V L R  F   P +  V +       C   +G P+P LHW+K+      G++ ++ S  
Sbjct: 252 LVVLERPSFLRRPINQVVLADAPVNFLCEV-QGDPQPNLHWRKDDGELPAGRY-EIRSDH 309

Query: 210 SL---DLSRRTLGWLRVRPLYWNVARPRA------NLNPRYIGRKMASLLIWNHPRVN-R 259
           SL    +S    G         +V R  A      ++ P+++ +     +    P  N  
Sbjct: 310 SLWIDQVSSEDEGTYTCVAEN-SVGRAEASGSLSVHVPPQFVTKPQNQTVA---PGANVS 365

Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNA---YGHLHVTQEGTLRIQGVQKEDAGFFVCS 316
             C  +G+P P++FW +EGSQVL+FP  +    G L V+  G L I  V+  D G++VC 
Sbjct: 366 FQCETKGNPPPAIFWQKEGSQVLLFPSQSLQPMGRLLVSPRGQLNITEVKIGDGGYYVCQ 425

Query: 317 ALSVAGSTTVRAFLQVREFCV--LP--------KGTFTLG-------------QPNLATG 353
           A+SVAGS   +A L+++   +  LP          T  LG             QPN+   
Sbjct: 426 AVSVAGSILAKALLEIKGASIDGLPPIILQGPANQTLVLGSSVWLPCRVIGNPQPNIQW- 484

Query: 354 NSDLRRIACD----------------LRETDSGLYTCTASSESGETSWSASLSVEPRPGP 397
             D R +  D                ++E D G Y+C A S  GE +W++ L        
Sbjct: 485 KKDERWLQGDDSQFNLMDNGTLHIASIQEMDMGFYSCVAKSSIGEATWNSWL-------- 536

Query: 398 HAVHRMPDSGLFPGPP----------AAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYT 447
               +  D G  PGP           + P++   T  S+TL W +P P+ G  A    Y 
Sbjct: 537 ---RKQEDWGASPGPATGPSNPPGPPSQPIVTEVTANSITLTW-KPNPQSGATA--TSYV 590

Query: 448 VEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTL 507
           +E FS      W   A  +   + T+S L+P+T Y+F+VRA  + GL  PSPVS   +T 
Sbjct: 591 IEAFSQAAGNTWRTVADGVQLETYTISGLQPNTIYLFLVRAVGAWGLSEPSPVSEPVQT- 649

Query: 508 GLNSLVPQHLLDEARARLGTKVVNLRELIPT--ASTAVRITWEV 549
             +S + +   D  + + G   V +R   PT      ++++W V
Sbjct: 650 -QDSSLSRPAEDPWKGQRGLAEVAVRMQEPTVLGPRTLQVSWTV 692

Thought to be involved during neural development in axonal navigation at the ventral midline of the neural tube. In spinal chord development plays a role in guiding commissural axons probably by preventing premature sensitivity to Slit proteins thus inhibiting Slit signaling through ROBO1. Required for hindbrain axon midline crossing.

Mus musculus (taxid: 10090)

>sp|P11627|L1CAM_MOUSE Neural cell adhesion molecule L1 OS=Mus musculus GN=L1cam PE=1 SV=1

 Score =  120 bits (302), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 132/487 (27%), Positives = 194/487 (39%), Gaps = 84/487 (17%)

Query: 73  FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD-DRSLQIENVG 131
           FP +  S    L G  +   C   G P PTI W      MPT R    + +++LQ+ NVG
Sbjct: 243 FPTNSSSRLVALQGQSLILECIAEGFPTPTIKWLHPSDPMPTDRVIYQNHNKTLQLLNVG 302

Query: 132 PQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPE 191
            +D+G Y C  EN +GS      +TV      +  +P+      GETA L+C   +G+P+
Sbjct: 303 EEDDGEYTCLAENSLGSARHAYYVTVEAA-PYWLQKPQSHLYGPGETARLDCQ-VQGRPQ 360

Query: 192 PTLHWKKNGQFID-LESSKSLDLSRRTLGWLRVRPLYWNVARPRANLN------------ 238
           P + W+ NG  ++ +   +   + + +L    V+P    V +  A               
Sbjct: 361 PEITWRINGMSMETVNKDQKYRIEQGSLILSNVQPTDTMVTQCEARNQHGLLLANAYIYV 420

Query: 239 ---PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFW-TQEGSQVL----MFPGNAYG 290
              P  I  K     +        L C A G+P+PSV W  +EG+ VL     FP   Y 
Sbjct: 421 VQLPARILTKDNQTYMAVEGSTAYLLCKAFGAPVPSVQWLDEEGTTVLQDERFFP---YA 477

Query: 291 HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKG--------- 341
           +      GTL I+ +Q  D G + C A +   + T+ A LQV+E   + +G         
Sbjct: 478 N------GTLSIRDLQANDTGRYFCQAANDQNNVTILANLQVKEATQITQGPRSAIEKKG 531

Query: 342 ---TFTLG---QPNLAT--------------GNSDL------RRIACDLRETDSGLYTCT 375
              TFT      P+L                G+SD       + +   L  +D G Y+C 
Sbjct: 532 ARVTFTCQASFDPSLQASITWRGDGRDLQERGDSDKYFIEDGKLVIQSLDYSDQGNYSCV 591

Query: 376 ASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEP 435
           AS+E  E    A L V   PGP     + D  L              +  V L W   E 
Sbjct: 592 ASTELDEVESRAQLLVVGSPGPVPHLELSDRHLL------------KQSQVHLSWSPAED 639

Query: 436 RGGGVAPVIGYTVEYFSSDLQ-TGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGL 494
                +P+  Y +E+   ++    W        + + T   L P   Y F V A N +G 
Sbjct: 640 HN---SPIEKYDIEFEDKEMAPEKWFSLGKVPGNQTSTTLKLSPYVHYTFRVTAINKYGP 696

Query: 495 GIPSPVS 501
           G PSPVS
Sbjct: 697 GEPSPVS 703

Cell adhesion molecule with an important role in the development of the nervous system. Involved in neuron-neuron adhesion, neurite fasciculation, outgrowth of neurites, etc. Binds to axonin on neurons.

Mus musculus (taxid: 10090)

>sp|Q05695|L1CAM_RAT Neural cell adhesion molecule L1 OS=Rattus norvegicus GN=L1cam PE=2 SV=3

 Score =  119 bits (297), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 133/487 (27%), Positives = 193/487 (39%), Gaps = 84/487 (17%)

Query: 73  FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD-DRSLQIENVG 131
           FP +  S    L G  +   C   G P PTI W      MPT R    + +++LQ+ NVG
Sbjct: 243 FPTNSSSHLVALQGQSLILECIAEGFPTPTIKWLHPSDPMPTDRVIYQNHNKTLQLLNVG 302

Query: 132 PQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPE 191
            +D+G Y C  EN +GS      +TV      +  +P+      GETA L+C   +G+P+
Sbjct: 303 EEDDGEYTCLAENSLGSARHAYYVTVEAA-PYWLQKPQSHLYGPGETARLDCQ-VQGRPQ 360

Query: 192 PTLHWKKNGQFID-LESSKSLDLSRRTLGWLRVRPLYWNVARPRANLN------------ 238
           P + W+ NG  I+ +   +   + + +L    V+P    V +  A               
Sbjct: 361 PEVTWRINGMSIEKVNKDQKYRIEQGSLILSNVQPSDTMVTQCEARNQHGLLLANAYIYV 420

Query: 239 ---PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFW-TQEGSQVL----MFPGNAYG 290
              P  I  K     +        L C A G+P+PSV W  +EG+ VL     FP  A G
Sbjct: 421 VQLPARILTKDNQTYMAVEGSTAYLLCKAFGAPVPSVQWLDEEGTTVLQDERFFP-YANG 479

Query: 291 HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKG--------- 341
           H        L I+ +Q  D G + C A +   + T+ A LQV+E   + +G         
Sbjct: 480 H--------LGIRDLQANDTGRYFCQAANDQNNVTILANLQVKEATQITQGPRSTIEKKG 531

Query: 342 ---TFTLG---QPNLAT--------------GNSDL------RRIACDLRETDSGLYTCT 375
              TFT      P+L                G+SD       + +   L  +D G Y+C 
Sbjct: 532 ARVTFTCQASFDPSLQASITWRGDGRDLQERGDSDKYFIEDGQLVIKSLDYSDQGDYSCV 591

Query: 376 ASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEP 435
           AS+E  E    A L V   PGP     + D  L              +  V L W   E 
Sbjct: 592 ASTELDEVESRAQLLVVGSPGPVPHLELSDRHLL------------KQSQVHLSWSPAED 639

Query: 436 RGGGVAPVIGYTVEYFSSDLQ-TGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGL 494
                +P+  Y +E+   ++    W        + + T   L P   Y F V A N +G 
Sbjct: 640 HN---SPIEKYDIEFEDKEMAPEKWFSLGKVPGNQTSTTLKLSPYVHYTFRVTAINKYGP 696

Query: 495 GIPSPVS 501
           G PSPVS
Sbjct: 697 GEPSPVS 703

Cell adhesion molecule with an important role in the development of the nervous system. Involved in neuron-neuron adhesion, neurite fasciculation, outgrowth of neurites, etc. Binds to axonin on neurons.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	633
328712717	1397	PREDICTED: roundabout homolog 2-like [Ac	0.927	0.420	0.412	1e-122
242012205	999	predicted protein [Pediculus humanus cor	0.816	0.517	0.380	9e-98
374637164	1055	roundabout-like protein, partial [Tribol	0.815	0.489	0.401	1e-97
91079308	1073	PREDICTED: similar to roundabout 1 [Trib	0.815	0.480	0.401	1e-97
270004828	949	roundabout [Tribolium castaneum]	0.815	0.543	0.401	1e-97
241056034	717	conserved hypothetical protein [Ixodes s	0.819	0.723	0.374	1e-93
195383052	1390	GJ20309 [Drosophila virilis] gi|19414503	0.837	0.381	0.379	4e-93
195029825	1391	GH22099 [Drosophila grimshawi] gi|193903	0.837	0.381	0.384	4e-93
195346823	1429	GM15615 [Drosophila sechellia] gi|194135	0.837	0.370	0.375	6e-93
195150159	1362	GL10711 [Drosophila persimilis] gi|19410	0.838	0.389	0.380	1e-92

>gi|328712717|ref|XP_001952693.2| PREDICTED: roundabout homolog 2-like [Acyrthosiphon pisum]

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 282/683 (41%), Positives = 379/683 (55%), Gaps = 96/683 (14%)

Query: 13  MSSPRAEIEPATRTNRVSISGDPGFDSRRSRSIFG---------SVLGARGALSDDQWKL 63
           M+S RAE++     N ++  GD G   R +  +F           V+ AR A S +   L
Sbjct: 171 MASNRAELD----GNLLTKPGDFG-KFRETAKVFQPADMPLVTRKVIIARLAQSVEHETL 225

Query: 64  IAKEALIKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKM---PTGRAKI 119
             +  ++K     EP D  V  G      C    G P P ++W++D   +    T R +I
Sbjct: 226 NLRVVVLKDEFRVEPKDTKVAQGQTALMECSPPKGHPDPMVVWKKDREDVHIDSTTRMRI 285

Query: 120 LDDRSLQIENVGPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGET 178
           +D  +L I +V   D G Y+C  +N+VG   S  A LTV++ +     EPKD  V +G+T
Sbjct: 286 VDGGNLMITDVKQDDGGEYLCVAQNIVGKKESTPAKLTVNV-KPFINTEPKDVTVHTGQT 344

Query: 179 ALLECGPPKGQPEPTLHWKKNG--------QFIDLESSKSLDLSRRTLGWLRVRPLYWNV 230
           A  EC    G P+P ++W+++G        Q +D +S + +++  +  G L V     +V
Sbjct: 345 AEFECKV-GGDPKPNIYWERDGNKMPFGRAQILDNKSLRIINVIAQDEG-LYVCNAENDV 402

Query: 231 ARPRANLN------PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMF 284
              +A  +      P ++ R     +  N   +    C A+G+P PSVFW++EGSQVLMF
Sbjct: 403 GSEKAKASLTVHSPPTFVTRPKDQKVGLN--GIANFDCVAQGNPPPSVFWSREGSQVLMF 460

Query: 285 PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFT 344
           PGNAYGH HVTQ+GTLRIQG QKEDAGF VCSALSVAGS T RAFLQV     +P     
Sbjct: 461 PGNAYGHFHVTQDGTLRIQGAQKEDAGFLVCSALSVAGSVTWRAFLQVTSVQDVPPPVVD 520

Query: 345 LGQPNLATGNSDLRRIAC-------------------------------------DLRET 367
           +G  N          + C                                     +L  +
Sbjct: 521 IGPTNQTLATRSAATLPCQASGIPLPTIKWYRNGNYLSPDDPRVTITSSGTLQIDELEVS 580

Query: 368 DSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVT 427
           DSGLYTCTASSESGETSWSASLSVE  PG   +HR PD  +FP  P+ P I+N TR SVT
Sbjct: 581 DSGLYTCTASSESGETSWSASLSVEESPGTR-LHRAPDPAMFPAAPSVPTIVNVTRNSVT 639

Query: 428 LGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVR 487
           + W  P P  G  +P++GYT+EY+SSDLQTGWVVAAHRI++ ++ V +LKPDTSY+F+VR
Sbjct: 640 VTWHPPTPHLGA-SPIVGYTLEYYSSDLQTGWVVAAHRISTNTMVVDNLKPDTSYVFMVR 698

Query: 488 AENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITW 547
           AENSHGL +PS +S + +T G N+++ Q  L+EAR RLGTKV++ +EL   +ST+VR+ W
Sbjct: 699 AENSHGLSVPSALSAMVKTGGTNTIITQQSLEEARERLGTKVIDFKELFAVSSTSVRVIW 758

Query: 548 EVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATV-MNAATTTSYT 606
           +V         L  A    G   V  R+L   + T        YNM TV MN     SYT
Sbjct: 759 DV---------LSSAEWVEGIH-VRFRDLSGGSQT--------YNMMTVMMNNGEPKSYT 800

Query: 607 VTHLRKFTKYEFFLVPFFKTVEG 629
           + +LRK+ KY+FFLVPFFKTVEG
Sbjct: 801 LANLRKYNKYDFFLVPFFKTVEG 823

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012205|ref|XP_002426824.1| predicted protein [Pediculus humanus corporis] gi|212511037|gb|EEB14086.1| predicted protein [Pediculus humanus corporis]

 Score =  364 bits (934), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 236/620 (38%), Positives = 315/620 (50%), Gaps = 103/620 (16%)

Query: 68  ALIKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTG---RAKILDDR 123
           AL+K     EP    V +G      C    G P P + W+++   +      + +I+D  
Sbjct: 2   ALLKDEFRVEPKHTRVAAGETALLTCGAPKGFPEPIVEWKKNSQTINLDDPRKIRIVDGG 61

Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLEC 183
           +L I +V   DEG Y C  +N VG    + ++    ++  F  EP D      E+   +C
Sbjct: 62  NLMINDVKQTDEGKYQCIAKNKVGIKESKVAILTVNVKPFFNKEPTDATALIEESVKFQC 121

Query: 184 GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV----RPLYWNVAR------- 232
              +G P P + W+K+     L S ++  L   +L    V      +Y   A        
Sbjct: 122 KV-EGDPTPNIIWRKDDG--KLPSRRAHTLEDHSLMIEHVSLEDEGIYICDAENVVGKIS 178

Query: 233 PRANLN----PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNA 288
            RA+L     P +I +     +  N   +    C A+G+P PSVFWT+EGSQ LMFPGNA
Sbjct: 179 ARASLTVHSPPTFIRKPQNQKVGLNG--IATFECVAKGNPPPSVFWTKEGSQDLMFPGNA 236

Query: 289 YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQP 348
           YG  H+T EG+LRIQG Q+ED+GF VCSALSVAGS TVRAFLQV     +P      G  
Sbjct: 237 YGRFHITPEGSLRIQGAQREDSGFLVCSALSVAGSATVRAFLQVTSVADVPPPILDFGPT 296

Query: 349 NLATGNSDLRRIACD------------------------------------LRETDSGLY 372
           N      ++  + C                                     L+ +DSG Y
Sbjct: 297 NQTLRYGEVASLLCQTSQKDAKIKWYKNGNPLDEGKERFHIKPSGTLLIDSLQTSDSGHY 356

Query: 373 TCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGE 432
           TCTASSESGETSWSASL+V+       +HR PD   FP PP  P+ILN T  SV L W  
Sbjct: 357 TCTASSESGETSWSASLTVDRGSSTSTIHRTPDPSTFPLPPLKPMILNVTESSVKLAWKN 416

Query: 433 PEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSH 492
              R      +IGYT+EYFSSDLQTGWVVAAHRI S SIT++DLKPDT+Y+F+VR+EN +
Sbjct: 417 NPERRENEPTLIGYTIEYFSSDLQTGWVVAAHRILSESITITDLKPDTNYIFLVRSENLN 476

Query: 493 GLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWG 552
           GL  PSP+S   +TLG                      +LR                   
Sbjct: 477 GLSPPSPLSEQVKTLG---------------------GDLR------------------- 496

Query: 553 SVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATT---TSYTVTH 609
           +V +  LDEAR+RL TKVV L+ +   +ST+VR+ W+  N    +        TSY V++
Sbjct: 497 AVSKSELDEARSRLSTKVVELKHIEAISSTSVRLNWKILNAQEFVEGLYVRFPTSYLVSN 556

Query: 610 LRKFTKYEFFLVPFFKTVEG 629
           L+K++KYEFFLVPF+K+VEG
Sbjct: 557 LKKYSKYEFFLVPFYKSVEG 576

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|374637164|gb|AEZ54711.1| roundabout-like protein, partial [Tribolium castaneum]

 Score =  364 bits (934), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 247/615 (40%), Positives = 326/615 (53%), Gaps = 99/615 (16%)

Query: 78  PSDATVLSGSVVEFVCRV-GGDPLPTILWRRD------DGKMPTGRAKILDDRSLQIENV 130
           PSD  V +G      C    G P P ++WR+D      DG+    R +I+D  +L I +V
Sbjct: 108 PSDTRVAAGETALLQCGAPRGHPEPNLMWRKDGEVLEVDGR----RIRIVDGGNLMISDV 163

Query: 131 GPQDEGLYICDVENLVGSISLR-ASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQ 189
              DEG Y C   NLVGS       LTVH+ +  F  EP+D     G+  + +C    G+
Sbjct: 164 RQHDEGRYQCVAHNLVGSRETPPVMLTVHV-KPFFNKEPQDVVALLGKRVVFQCAV-DGE 221

Query: 190 PEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP--LYWNVAR-------PRANL--- 237
           P P + W++    + +  ++ LD     +  ++     +Y   A         +A+L   
Sbjct: 222 PVPNVLWRREDGKMPIGRARILDDKSLLIDNVQTSDEGIYICAAENVVGSITAKASLVVN 281

Query: 238 -NPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 296
             P +I +     +  N   V    C A G+P PSVFWT+EGSQ+LMFP N+YGH+HV  
Sbjct: 282 SPPTFIEKPRDQKVSLNG--VVEFHCSATGNPPPSVFWTKEGSQMLMFPDNSYGHMHVNA 339

Query: 297 EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSD 356
            GTLRIQGVQ+EDAGF VCSALSVAGS++VRAFLQV     LP     +G  N       
Sbjct: 340 HGTLRIQGVQREDAGFLVCSALSVAGSSSVRAFLQVTSVADLPPPIIQIGPANQTLPLHS 399

Query: 357 LRRIACD------------------------------LRET-----------DSGLYTCT 375
           +  + C                               + ET           DSGLYTC+
Sbjct: 400 MVTLHCKASSPEGEQPKIRWSKDGKVLQEERLPDRYTISETGTLDIDDLRLDDSGLYTCS 459

Query: 376 ASSESGETSWSASLSVEPRPGPHA-VHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPE 434
           A SESGE+SWSASLSV    G  A +HR PD   FP  P  P ILN T  S+TL W +  
Sbjct: 460 AISESGESSWSASLSVV--EGSSALLHRSPDPSTFPKAPNQPRILNATESSITLAWDD-- 515

Query: 435 PRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGL 494
              G  A ++GYTVEY+S DLQTGWV+AAHR+ S  I V +LKPD+SYMFIVRAEN+HGL
Sbjct: 516 ---GPEAGLVGYTVEYWSPDLQTGWVIAAHRV-SNYIVVRELKPDSSYMFIVRAENAHGL 571

Query: 495 GIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSV 554
              SPVS I RTL  +  V    LD AR  L TK+V LR+  P +S++V++TW ++    
Sbjct: 572 SPASPVSSIARTLANSRAVSGSELDTARTALSTKLVELRDARPQSSSSVKLTWSLA---- 627

Query: 555 PQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFT 614
                  A   +    +  REL   +          YN+ TV++   T SYTV++L+KFT
Sbjct: 628 -------ALDYIEGLYIRFRELSGGS--------HNYNILTVLD-VQTKSYTVSNLKKFT 671

Query: 615 KYEFFLVPFFKTVEG 629
           KYEFF+ PF+K+VEG
Sbjct: 672 KYEFFIAPFYKSVEG 686

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91079308|ref|XP_967065.1| PREDICTED: similar to roundabout 1 [Tribolium castaneum]

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 247/615 (40%), Positives = 326/615 (53%), Gaps = 99/615 (16%)

Query: 78  PSDATVLSGSVVEFVCRV-GGDPLPTILWRRD------DGKMPTGRAKILDDRSLQIENV 130
           PSD  V +G      C    G P P ++WR+D      DG+    R +I+D  +L I +V
Sbjct: 126 PSDTRVAAGETALLQCGAPRGHPEPNLMWRKDGEVLEVDGR----RIRIVDGGNLMISDV 181

Query: 131 GPQDEGLYICDVENLVGSISLR-ASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQ 189
              DEG Y C   NLVGS       LTVH+ +  F  EP+D     G+  + +C    G+
Sbjct: 182 RQHDEGRYQCVAHNLVGSRETPPVMLTVHV-KPFFNKEPQDVVALLGKRVVFQCAV-DGE 239

Query: 190 PEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP--LYWNVAR-------PRANL--- 237
           P P + W++    + +  ++ LD     +  ++     +Y   A         +A+L   
Sbjct: 240 PVPNVLWRREDGKMPIGRARILDDKSLLIDNVQTSDEGIYICAAENVVGSITAKASLVVN 299

Query: 238 -NPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 296
             P +I +     +  N   V    C A G+P PSVFWT+EGSQ+LMFP N+YGH+HV  
Sbjct: 300 SPPTFIEKPRDQKVSLNG--VVEFHCSATGNPPPSVFWTKEGSQMLMFPDNSYGHMHVNA 357

Query: 297 EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSD 356
            GTLRIQGVQ+EDAGF VCSALSVAGS++VRAFLQV     LP     +G  N       
Sbjct: 358 HGTLRIQGVQREDAGFLVCSALSVAGSSSVRAFLQVTSVADLPPPIIQIGPANQTLPLHS 417

Query: 357 LRRIACD------------------------------LRET-----------DSGLYTCT 375
           +  + C                               + ET           DSGLYTC+
Sbjct: 418 MVTLHCKASSPEGEQPKIRWSKDGKVLQEERLPDRYTISETGTLDIDDLRLDDSGLYTCS 477

Query: 376 ASSESGETSWSASLSVEPRPGPHA-VHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPE 434
           A SESGE+SWSASLSV    G  A +HR PD   FP  P  P ILN T  S+TL W +  
Sbjct: 478 AISESGESSWSASLSVV--EGSSALLHRSPDPSTFPKAPNQPRILNATESSITLAWDD-- 533

Query: 435 PRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGL 494
              G  A ++GYTVEY+S DLQTGWV+AAHR+ S  I V +LKPD+SYMFIVRAEN+HGL
Sbjct: 534 ---GPEAGLVGYTVEYWSPDLQTGWVIAAHRV-SNYIVVRELKPDSSYMFIVRAENAHGL 589

Query: 495 GIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSV 554
              SPVS I RTL  +  V    LD AR  L TK+V LR+  P +S++V++TW ++    
Sbjct: 590 SPASPVSSIARTLANSRAVSGSELDTARTALSTKLVELRDARPQSSSSVKLTWSLA---- 645

Query: 555 PQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFT 614
                  A   +    +  REL   +          YN+ TV++   T SYTV++L+KFT
Sbjct: 646 -------ALDYIEGLYIRFRELSGGS--------HNYNILTVLD-VQTKSYTVSNLKKFT 689

Query: 615 KYEFFLVPFFKTVEG 629
           KYEFF+ PF+K+VEG
Sbjct: 690 KYEFFIAPFYKSVEG 704

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004828|gb|EFA01276.1| roundabout [Tribolium castaneum]

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 247/615 (40%), Positives = 326/615 (53%), Gaps = 99/615 (16%)

Query: 78  PSDATVLSGSVVEFVCRV-GGDPLPTILWRRD------DGKMPTGRAKILDDRSLQIENV 130
           PSD  V +G      C    G P P ++WR+D      DG+    R +I+D  +L I +V
Sbjct: 2   PSDTRVAAGETALLQCGAPRGHPEPNLMWRKDGEVLEVDGR----RIRIVDGGNLMISDV 57

Query: 131 GPQDEGLYICDVENLVGSISLR-ASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQ 189
              DEG Y C   NLVGS       LTVH+ +  F  EP+D     G+  + +C    G+
Sbjct: 58  RQHDEGRYQCVAHNLVGSRETPPVMLTVHV-KPFFNKEPQDVVALLGKRVVFQCAV-DGE 115

Query: 190 PEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP--LYWNVAR-------PRANL--- 237
           P P + W++    + +  ++ LD     +  ++     +Y   A         +A+L   
Sbjct: 116 PVPNVLWRREDGKMPIGRARILDDKSLLIDNVQTSDEGIYICAAENVVGSITAKASLVVN 175

Query: 238 -NPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 296
             P +I +     +  N   V    C A G+P PSVFWT+EGSQ+LMFP N+YGH+HV  
Sbjct: 176 SPPTFIEKPRDQKVSLNG--VVEFHCSATGNPPPSVFWTKEGSQMLMFPDNSYGHMHVNA 233

Query: 297 EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSD 356
            GTLRIQGVQ+EDAGF VCSALSVAGS++VRAFLQV     LP     +G  N       
Sbjct: 234 HGTLRIQGVQREDAGFLVCSALSVAGSSSVRAFLQVTSVADLPPPIIQIGPANQTLPLHS 293

Query: 357 LRRIACD------------------------------LRET-----------DSGLYTCT 375
           +  + C                               + ET           DSGLYTC+
Sbjct: 294 MVTLHCKASSPEGEQPKIRWSKDGKVLQEERLPDRYTISETGTLDIDDLRLDDSGLYTCS 353

Query: 376 ASSESGETSWSASLSVEPRPGPHA-VHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPE 434
           A SESGE+SWSASLSV    G  A +HR PD   FP  P  P ILN T  S+TL W +  
Sbjct: 354 AISESGESSWSASLSVV--EGSSALLHRSPDPSTFPKAPNQPRILNATESSITLAWDD-- 409

Query: 435 PRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGL 494
              G  A ++GYTVEY+S DLQTGWV+AAHR+ S  I V +LKPD+SYMFIVRAEN+HGL
Sbjct: 410 ---GPEAGLVGYTVEYWSPDLQTGWVIAAHRV-SNYIVVRELKPDSSYMFIVRAENAHGL 465

Query: 495 GIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSV 554
              SPVS I RTL  +  V    LD AR  L TK+V LR+  P +S++V++TW ++    
Sbjct: 466 SPASPVSSIARTLANSRAVSGSELDTARTALSTKLVELRDARPQSSSSVKLTWSLA---- 521

Query: 555 PQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFT 614
                  A   +    +  REL   +          YN+ TV++   T SYTV++L+KFT
Sbjct: 522 -------ALDYIEGLYIRFRELSGGS--------HNYNILTVLD-VQTKSYTVSNLKKFT 565

Query: 615 KYEFFLVPFFKTVEG 629
           KYEFF+ PF+K+VEG
Sbjct: 566 KYEFFIAPFYKSVEG 580

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241056034|ref|XP_002407743.1| conserved hypothetical protein [Ixodes scapularis] gi|215492257|gb|EEC01898.1| conserved hypothetical protein [Ixodes scapularis]

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 231/617 (37%), Positives = 321/617 (52%), Gaps = 98/617 (15%)

Query: 78  PSDATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKMPTG--RAKILDDRSLQIENVGPQD 134
           P  + V +G      C    G P P++ W +D  ++ TG  R ++L   SL I +V   D
Sbjct: 10  PKSSRVAAGESATLECVAPRGHPEPSVTWFKDGAQVATGTGRIRLLGHGSLLIADVRHAD 69

Query: 135 EGLYICDVENLVGSISL-RASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPT 193
           +G Y+C   NL+G+     A+L+VH  +  F   P+D    + ET   +C    G P+PT
Sbjct: 70  QGRYVCRAANLLGTRETPAATLSVHT-KPYFVRVPEDVTTLADETVEFQCKV-NGDPKPT 127

Query: 194 LHWKK-NGQF----IDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMAS 248
           + W++ +G+      +++  KSL +         V P+        +     ++G   AS
Sbjct: 128 VTWRRQDGKMPVGRANIQEDKSLRIQN-------VAPMDEGTYICESQ---NFVGSVSAS 177

Query: 249 LLIWNHPR----------------VNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHL 292
             +  H R                V +  C A G+PLPSVFWT+EG QVLMFPG ++G  
Sbjct: 178 ASLTVHSRPSFRLTPEDQKVGLNGVAKFDCLATGNPLPSVFWTREGKQVLMFPGKSHGRF 237

Query: 293 HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLAT 352
            VT EGTL I  V+KED G++ CSALSV GS+  +  L+V     LP     LG  N   
Sbjct: 238 SVTNEGTLVISSVRKEDRGYYTCSALSVVGSSMAKGHLEVTANADLPPPVIRLGPANQTL 297

Query: 353 GNSDLRRIACD--------------------------------------LRETDSGLYTC 374
             +    + C+                                      L+ TDSG YTC
Sbjct: 298 PINTAAIMPCEASGKPTPTVRWQYNGVPLQIDTRPRYVILQSGTLRINGLQITDSGTYTC 357

Query: 375 TASSESGETSWSASLSVEPRPGPHA-VHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEP 433
           TAS+ESGETSW+ASL+VE    P+   HR PD   FPGPP+ PV++N +  S+TL W   
Sbjct: 358 TASTESGETSWTASLTVESPHNPNVNFHRSPDPSTFPGPPSKPVVVNISETSITLTWRRS 417

Query: 434 EPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHG 493
           E  G   + + GY++EY+SSDLQ+GWV  A R+ S + TV  L+PD+ Y+FIVRAENSHG
Sbjct: 418 EKVGE--SSLKGYSIEYYSSDLQSGWVSGARRLLSETYTVQALRPDSRYIFIVRAENSHG 475

Query: 494 LGIPSPVSPITRTLGL-NSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWG 552
           LG PSP S   RTLGL   L+P++ LDEARA+L   VV L +    +STAV++TW +   
Sbjct: 476 LGPPSPASDTIRTLGLPPHLLPEYNLDEARAKLTACVVTLLDARAASSTAVKLTWRI--- 532

Query: 553 SVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRK 612
                   E +  +    +  R+        V    +KYNM TV+N A  +SY ++ LR 
Sbjct: 533 -------QEDKDYVEGFYIRFRD--------VSGGSQKYNMVTVLNGA-ASSYVLSDLRP 576

Query: 613 FTKYEFFLVPFFKTVEG 629
           +TKYEFFLVPFF +VEG
Sbjct: 577 YTKYEFFLVPFFMSVEG 593

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195383052|ref|XP_002050240.1| GJ20309 [Drosophila virilis] gi|194145037|gb|EDW61433.1| GJ20309 [Drosophila virilis]

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 234/616 (37%), Positives = 324/616 (52%), Gaps = 86/616 (13%)

Query: 77  EPSDATVLSGSVVEFVCRV-GGDPLPTILWRR------DDGKMPTG---RAKILDDRSLQ 126
           EP D  V  G      C    G P PTI+W +      D    P G   R +I+D  +L 
Sbjct: 132 EPKDTRVAKGETALLECGPPKGIPEPTIIWMKNGVPLDDLTSKPFGTSSRVRIVDGGNLL 191

Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPP 186
           I NV P DEG Y C  +NL+GS     +  +  ++  F  EPKD  +  G+TA   C   
Sbjct: 192 ISNVEPIDEGNYRCIAQNLLGSRESSYAKLIVQIKPFFMKEPKDLTMVYGQTATFHCSV- 250

Query: 187 KGQPEPTLHWKKNGQFID------LESSKSLDLSRRTLG--WLRVRPLYWNVAR--PRAN 236
            G P P + WKK    I       L   KSL+LS  T       V   + NV +   RA 
Sbjct: 251 GGDPPPKVLWKKEEGNIPVSRARILHDEKSLELSNITPNDEGTYVCEAHNNVGQISARAT 310

Query: 237 LN---PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLH 293
           L    P    +K  +  +  + +V +L C A G+P PSVFWT+EG   LMFP + +G  H
Sbjct: 311 LTVHAPPNFSKKPTNKKVGLNGQV-QLPCVATGNPPPSVFWTKEGVSTLMFPNSTHGRQH 369

Query: 294 VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREF--------------CVLP 339
           +T EGTL+I  VQ++D GF+VCSA SV  S+TVR FLQV                   LP
Sbjct: 370 ITAEGTLQISDVQQDDEGFYVCSAFSVVDSSTVRIFLQVSTVDERPPPIIQIGPTNQTLP 429

Query: 340 KGTFTLGQPNLATGN-------------------------SDLRRIACDLRETDSGLYTC 374
           KG+     P  ATGN                         S LR    DL+ +DSGLYTC
Sbjct: 430 KGSVAT-MPCRATGNPTPRVKWFHDGYAVQTSNRHSIVQGSSLR--VDDLQLSDSGLYTC 486

Query: 375 TASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPE 434
           TA+SE GE+SWSA+L+VE +     +HR+ D   +P PP  P ++N TR S++L W + +
Sbjct: 487 TATSERGESSWSATLTVE-KSSSATLHRIADPSTYPAPPGTPKVINVTRTSISLRWAKSQ 545

Query: 435 PRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGL 494
            + G V P+IGY VEYFS DLQTGW+VAAHR+  T +T+S+L   T+Y+F+VRAENS G+
Sbjct: 546 EKPGAVGPIIGYAVEYFSPDLQTGWIVAAHRVPDTQVTISELTSATAYVFLVRAENSQGV 605

Query: 495 GIPSPVSPITRTLGLN-SLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGS 553
            +PS +S   +TLG +  + P + L  AR  L  KVV L +     ++AVR+ W      
Sbjct: 606 SVPSGLSNAIKTLGEDFDVTPSNELSAARTLLTGKVVELIDASAVNASAVRLDW------ 659

Query: 554 VPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF 613
               +L  +      + +++R    ++ +       +YN+ TV++A    S+ V +LRK+
Sbjct: 660 ----MLHVSANEKFVEGLHIRYRDASSHST------QYNVITVLDAG-AESHVVANLRKY 708

Query: 614 TKYEFFLVPFFKTVEG 629
           TKYEFFL PF++T+EG
Sbjct: 709 TKYEFFLTPFYETIEG 724

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195029825|ref|XP_001987772.1| GH22099 [Drosophila grimshawi] gi|193903772|gb|EDW02639.1| GH22099 [Drosophila grimshawi]

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 237/616 (38%), Positives = 325/616 (52%), Gaps = 86/616 (13%)

Query: 77  EPSDATVLSGSVVEFVCRV-GGDPLPTILWRR------DDGKMPTG---RAKILDDRSLQ 126
           EP D  V  G      C    G P PTI+W +      D    P G   R +I+D  +L 
Sbjct: 131 EPKDTRVAKGETALLECGPPKGIPEPTIIWMKNGVPLDDLSSKPFGTSSRVRIVDGGNLL 190

Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPP 186
           I NV P DEG Y C  +NL+GS     +  +  ++  F  EPKD  +  G+TA   C   
Sbjct: 191 ISNVEPIDEGNYKCIAQNLLGSRESSYAKLIVQIKPYFMKEPKDLTMVYGQTATFHCSV- 249

Query: 187 KGQPEPTLHWKKNGQFID------LESSKSLDLSRRTLG--WLRVRPLYWNVAR--PRAN 236
            G P P + WKK    I       L   KSL+L+  T       V   + NV +   RA 
Sbjct: 250 GGDPPPKVLWKKEEGNIPVSRARILHDEKSLELTNITPNDEGTYVCEAHNNVGQISARAT 309

Query: 237 LN---PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLH 293
           L    P    +K  +  I  + +V +L C A G+P PSVFWT+EG   LMFP  ++G  H
Sbjct: 310 LTVHAPPNFSKKPTNKKIGLNGQV-QLPCVATGNPPPSVFWTKEGVSTLMFPNTSHGRQH 368

Query: 294 VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREF--------------CVLP 339
           ++ EGTL+I  VQ+ED GF+VCSA SV  S+TVR FLQV                   LP
Sbjct: 369 ISAEGTLQINDVQQEDEGFYVCSAFSVVDSSTVRIFLQVSSVDERPPPLIQIGPTNQTLP 428

Query: 340 KGTFTLGQPNLATGN-------------------------SDLRRIACDLRETDSGLYTC 374
           KG+     P  ATGN                         S LR    DL+ +DSGLYTC
Sbjct: 429 KGSVAT-MPCRATGNPTPRVKWFHDGYAVQTTSRHSIVQGSSLR--VDDLQLSDSGLYTC 485

Query: 375 TASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPE 434
           TASSE GE+SWSA+L VE +     +HR+ D   +P PP  P ++N TR S++L W + +
Sbjct: 486 TASSERGESSWSAALMVE-KSSSATLHRIADPSTYPAPPGTPKVINVTRTSISLRWAKSQ 544

Query: 435 PRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGL 494
            + G V P+IGY VEYFS DLQTGW+VAAHR+  T +T+SDL   TSY+F+VRAEN  G+
Sbjct: 545 DKPGAVGPIIGYAVEYFSPDLQTGWIVAAHRVHDTQVTISDLTSATSYVFLVRAENMQGV 604

Query: 495 GIPSPVSPITRTLGLN-SLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGS 553
            +PS +S   +TLG +  + P + L  AR  L  KVV L +     ++AVR+ W +    
Sbjct: 605 SVPSGLSNPIKTLGEDFDMPPSNELSAARTLLTGKVVELIDASAVNASAVRLDWML---- 660

Query: 554 VPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF 613
              H+ +  +   G   +++R    ++ + +      YN+ TV++A+   S+ V +LRK+
Sbjct: 661 ---HVSENEKFVEG---LHIRYRDYSSHSTL------YNVITVLDAS-VESHVVGNLRKY 707

Query: 614 TKYEFFLVPFFKTVEG 629
           TKYEFFL PF++T+EG
Sbjct: 708 TKYEFFLTPFYETIEG 723

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195346823|ref|XP_002039954.1| GM15615 [Drosophila sechellia] gi|194135303|gb|EDW56819.1| GM15615 [Drosophila sechellia]

 Score =  348 bits (893), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 231/616 (37%), Positives = 321/616 (52%), Gaps = 86/616 (13%)

Query: 77  EPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKM---------PTGRAKILDDRSLQ 126
           EP D  V  G      C    G P PT++W +D   +          + R +I+D  +L 
Sbjct: 194 EPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLL 253

Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPP 186
           I NV P DEG Y C  +NLVG+     +  +  ++  F  EPKD  +  G+TA   C   
Sbjct: 254 ISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKPYFMKEPKDQVMLYGQTATFHCSV- 312

Query: 187 KGQPEPTLHWKKNGQFID------LESSKSLDLSR--RTLGWLRVRPLYWNVAR--PRAN 236
            G P P + WKK    I       L   KSL++S    T     V   + NV +   RA+
Sbjct: 313 GGDPPPKVLWKKEEGNIPVSRARILHDEKSLEISNITPTDEGTYVCEAHNNVGQISARAS 372

Query: 237 L----NPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHL 292
           L     P +  R     +  N   V +L C A G+P PSVFWT+EG   LMFP +++G  
Sbjct: 373 LIVHAPPNFTKRPSNKKVGLN--GVVQLPCMASGNPPPSVFWTKEGVSTLMFPNSSHGRQ 430

Query: 293 HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREF--------------CVL 338
           HV  +GTL+I  V++ED G++VCSA SV  S+TVR FLQV                   L
Sbjct: 431 HVAADGTLQITDVRQEDEGYYVCSAFSVVDSSTVRVFLQVSSVDERPPPIIQIGPANQTL 490

Query: 339 PKGTFTLGQPNLATGNSDLR------------------------RIACDLRETDSGLYTC 374
           PKG+     P  ATGN   R                        R+  DL+ +DSG YTC
Sbjct: 491 PKGSVAT-LPCRATGNPSPRIKWFHNGHAVQAGNRYSIMQGSSLRVD-DLQLSDSGTYTC 548

Query: 375 TASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPE 434
           TAS E GETSW+A+L+VE +PG  ++HR  D   +P PP  P +LN +R S++L W + +
Sbjct: 549 TASGERGETSWAATLTVE-KPGSTSLHRAADPSTYPAPPGTPKVLNVSRTSISLRWAKSQ 607

Query: 435 PRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGL 494
            + G V P+IGYTVEYFS DLQTGW+VAAHR+  T +T+S L P TSY+F+VRAEN+ G+
Sbjct: 608 EKPGAVGPIIGYTVEYFSPDLQTGWIVAAHRVGDTQVTISGLTPGTSYVFLVRAENTQGI 667

Query: 495 GIPSPVSPITRTLGLN-SLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGS 553
            +PS +S   +T+  +      H L  AR  L  K V L +     ++AVR+ W +    
Sbjct: 668 SVPSGLSNTIKTIEADFDAASAHDLSAARTLLTGKSVELIDASAINASAVRLEWML---- 723

Query: 554 VPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF 613
              H+  + +   G ++      +P+A         +Y+  TVM+ A+  SY V +L+K+
Sbjct: 724 ---HVSADEKYVEGLRIHYKDASVPSA---------QYHSITVMD-ASAESYVVGNLKKY 770

Query: 614 TKYEFFLVPFFKTVEG 629
           TKYEFFL PFF+T+EG
Sbjct: 771 TKYEFFLTPFFETIEG 786

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195150159|ref|XP_002016022.1| GL10711 [Drosophila persimilis] gi|194109869|gb|EDW31912.1| GL10711 [Drosophila persimilis]

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 234/615 (38%), Positives = 326/615 (53%), Gaps = 84/615 (13%)

Query: 77  EPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKM---------PTGRAKILDDRSLQ 126
           EP D  V  G      C    G P PT++W +D   +          + R +I+D  +L 
Sbjct: 127 EPKDTRVAKGETALLECGPPKGIPEPTLIWMKDGVPLDDLKAMSFGASSRVRIVDGGNLL 186

Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPP 186
           I NV P DEG Y C  +NLVG+     +  +  ++  F  EPKD  +  G+TA   C   
Sbjct: 187 ISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKPYFMKEPKDQVMLYGQTATFHCSV- 245

Query: 187 KGQPEPTLHWKKNGQFID------LESSKSLDLSRRTLG--WLRVRPLYWNVAR--PRAN 236
            G P P + WKK    I       L   KSL+LS  T       V   + NV +   RA+
Sbjct: 246 GGDPPPKVLWKKEEGNIPVSRARILHDEKSLELSNITPSDEGTYVCEAHNNVGQISARAS 305

Query: 237 LN---PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLH 293
           L    P    RK ++  +  +  V +  C A G+P PSVFWT+EG   LMFP +++G   
Sbjct: 306 LTVHAPPNFTRKPSNKKVGLNGAV-QFPCMASGNPPPSVFWTKEGVSTLMFPNSSHGRQQ 364

Query: 294 VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREF--------------CVLP 339
           V+ EGTL+I  VQ++D GF+VCSA SV  S+TVR FLQV                   LP
Sbjct: 365 VSSEGTLQISDVQQDDEGFYVCSAFSVVDSSTVRIFLQVSSVDERPPPIIQIGPTNQTLP 424

Query: 340 KGTFTL------GQPN-----------LATGN-------SDLRRIACDLRETDSGLYTCT 375
           KG          G PN           +  GN       S LR    DL+ +D+GLYTCT
Sbjct: 425 KGAVATLPCRATGTPNPRIKWFHNGYAVQPGNRHSIIQSSSLR--VDDLQLSDTGLYTCT 482

Query: 376 ASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEP 435
           ASSE GETSWSA+L+VE + G  ++HR  D   +P PP  P +LN +R S++L W + + 
Sbjct: 483 ASSERGETSWSATLTVE-KSGATSMHRAADPSTYPAPPGTPKVLNASRSSISLRWAKSQE 541

Query: 436 RGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLG 495
           + G V P+IGYTVEYFS DLQTGW+VAAHR+  T +T+SDL P TSY+F+VRAEN+ G+ 
Sbjct: 542 KPGAVGPIIGYTVEYFSPDLQTGWIVAAHRVADTQVTISDLTPATSYVFLVRAENTQGVS 601

Query: 496 IPSPVSPITRTLGLN-SLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSV 554
           +PS +S   +T+G +      + L  AR  L  K V L +     ++AVR+ W +     
Sbjct: 602 VPSGLSNAIKTIGEDFDAASANDLSAARNLLTRKSVELIDASAINASAVRLDWML----- 656

Query: 555 PQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFT 614
             H+  + +   G + ++ R+    ++        +Y+  TVM+ A+  S+ V +LRK+T
Sbjct: 657 --HVSADEKYVEGLR-IHYRDTNSHSA--------QYHSLTVMD-ASVESFVVGNLRKYT 704

Query: 615 KYEFFLVPFFKTVEG 629
           KYEFFL PFF+T+EG
Sbjct: 705 KYEFFLTPFFETIEG 719

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	633
FB|FBgn0005631	1429	robo "roundabout" [Drosophila	0.393	0.174	0.369	1.6e-77
FB|FBgn0002543	1463	lea "leak" [Drosophila melanog	0.415	0.179	0.326	6.4e-54
ZFIN|ZDB-GENE-040426-1874	1287	zgc:77784 "zgc:77784" [Danio r	0.399	0.196	0.307	5.2e-46
UNIPROTKB|F1SK64	1526	ROBO1 "Uncharacterized protein	0.301	0.125	0.311	1.4e-47
ZFIN|ZDB-GENE-000209-3	1675	robo1 "roundabout homolog 1" [	0.412	0.155	0.311	6.1e-45
UNIPROTKB|F1NR29	1495	ROBO1 "Uncharacterized protein	0.301	0.127	0.301	6.7e-47
FB|FBgn0041097	1342	robo3 "robo3" [Drosophila mela	0.402	0.190	0.321	2.2e-45
UNIPROTKB|F1NTM1	1359	ROBO2 "Uncharacterized protein	0.409	0.190	0.312	2.8e-45
MGI|MGI:1890110	1470	Robo2 "roundabout homolog 2 (D	0.407	0.175	0.319	9.5e-45
UNIPROTKB|Q9HCK4	1378	ROBO2 "Roundabout homolog 2" [	0.409	0.187	0.315	4e-44

FB|FBgn0005631 robo "roundabout" [Drosophila melanogaster (taxid:7227)]

 Score = 450 (163.5 bits), Expect = 1.6e-77, Sum P(3) = 1.6e-77
 Identities = 99/268 (36%), Positives = 146/268 (54%)

Query:   363 DLRETDSGLYTCXXXXXXXXXXXXXXXXVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTT 422
             DL+ +DSG YTC                VE +PG  ++HR  D   +P PP  P +LN +
Sbjct:   537 DLQLSDSGTYTCTASGERGETSWAATLTVE-KPGSTSLHRAADPSTYPAPPGTPKVLNVS 595

Query:   423 RGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSY 482
             R S++L W + + + G V P+IGYTVEYFS DLQTGW+VAA R+  T +T+S L P TSY
Sbjct:   596 RTSISLRWAKSQEKPGAVGPIIGYTVEYFSPDLQTGWIVAAQRVGDTQVTISGLTPGTSY 655

Query:   483 MFIVRAENSHGLGIPSPVSPITRTLGLN-SLVPQHLLDEARARLGTKVVNLRELIPTAST 541
             +F+VRAEN+ G+ +PS +S   +T+  +      + L  AR  L  K V L +     ++
Sbjct:   656 VFLVRAENTQGISVPSGLSNTIKTIEADFDAASANDLSAARTLLTGKSVELIDASAINAS 715

Query:   542 AVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYXXXXXXXXXX 601
             AVR+ W +       H+  + +   G ++      +P+A         +Y          
Sbjct:   716 AVRLEWML-------HVSADEKYVEGLRIHYKDASVPSA---------QYHSITVMDASA 759

Query:   602 XXSYTVTHLRKFTKYEFFLVPFFKTVEG 629
               S+ V +L+K+TKYEFFL PFF+T+EG
Sbjct:   760 E-SFVVGNLKKYTKYEFFLTPFFETIEG 786

GO:0007411 "axon guidance" evidence=IMP;TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0035385 "Roundabout signaling pathway" evidence=IGI

GO:0044295 "axonal growth cone" evidence=IDA

GO:0016199 "axon midline choice point recognition" evidence=IMP;TAS

GO:0031982 "vesicle" evidence=IDA

GO:2000274 "regulation of epithelial cell migration, open tracheal system" evidence=IMP

GO:0008038 "neuron recognition" evidence=IMP

GO:0070983 "dendrite guidance" evidence=IMP

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030424 "axon" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0048813 "dendrite morphogenesis" evidence=IMP;TAS

GO:0004872 "receptor activity" evidence=TAS

GO:0007427 "epithelial cell migration, open tracheal system" evidence=TAS

GO:0007432 "salivary gland boundary specification" evidence=IMP

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0022409 "positive regulation of cell-cell adhesion" evidence=IMP

GO:0071666 "Slit-Robo signaling complex" evidence=IDA

GO:0008201 "heparin binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009649 "entrainment of circadian clock" evidence=IDA

GO:0003151 "outflow tract morphogenesis" evidence=IGI

GO:0001964 "startle response" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IGI

GO:0043234 "protein complex" evidence=IPI

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0046716 "muscle cell homeostasis" evidence=IGI

GO:0072499 "photoreceptor cell axon guidance" evidence=IMP

FB|FBgn0002543 lea "leak" [Drosophila melanogaster (taxid:7227)]

 Score = 308 (113.5 bits), Expect = 6.4e-54, Sum P(3) = 6.4e-54
 Identities = 97/297 (32%), Positives = 137/297 (46%)

Query:    72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD--DGKMPTGRAKILDDRS----L 125
             P  I  P D TV       F C+  G+P PTI W +D  + K  TG  +I+        L
Sbjct:    91 PRIIEHPMDTTVPKNDPFTFNCQAEGNPTPTIQWFKDGRELKTDTGSHRIMLPAGGLFFL 150

Query:   126 Q-IENVGPQDEGLYICDVENLVG-SISLRASLTVHLLRDDFRAEPKDTRVASGETALLEC 183
             + I +    D G Y C+ +N  G + S  A+L V  LRD+FR EP +TRVA GE AL+EC
Sbjct:   151 KVIHSRRESDAGTYWCEAKNEFGVARSRNATLQVAFLRDEFRLEPANTRVAQGEVALMEC 210

Query:   184 GPPKGQPEPTLHWKKNGQFIDLESSKSLDL---------SRRTLGWLRVRPLYWNVARPR 234
             G P+G PEP + W+KNGQ ++L  +K + +           R     R + +  NV   R
Sbjct:   211 GAPRGSPEPQISWRKNGQTLNLVGNKRIRIVDGGNLAIQEARQSDDGRYQCVVKNVVGTR 270

Query:   235 ANLNPRYIGRKMASLLI---WNHPRVNRLS----CFAEGSPLPSVFWTQEGSQVLMFPGN 287
              +    ++   +   LI    N   V   S    C   G PLP V W +  S      GN
Sbjct:   271 ESATA-FLKVHVRPFLIRGPQNQTAVVGSSVVFQCRIGGDPLPDVLWRRTASG-----GN 324

Query:   288 A-YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR---EFCVLPK 340
                  +HV ++ +L++  V  ED G + C A +  G  T    L V    +F + PK
Sbjct:   325 MPLRRVHVLEDRSLKLDDVTLEDMGEYTCEADNAVGGITATGILTVHAPPKFVIRPK 381

GO:0007411 "axon guidance" evidence=IGI;IMP;TAS

GO:0007419 "ventral cord development" evidence=IMP

GO:0008046 "axon guidance receptor activity" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:2000274 "regulation of epithelial cell migration, open tracheal system" evidence=IMP

GO:0004872 "receptor activity" evidence=TAS

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=TAS

GO:0001764 "neuron migration" evidence=IMP

GO:0007432 "salivary gland boundary specification" evidence=IMP

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0048036 "central complex development" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0022409 "positive regulation of cell-cell adhesion" evidence=IMP

GO:0042685 "cardioblast cell fate specification" evidence=IMP

GO:0003151 "outflow tract morphogenesis" evidence=IGI

GO:0008039 "synaptic target recognition" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

ZFIN|ZDB-GENE-040426-1874 zgc:77784 "zgc:77784" [Danio rerio (taxid:7955)]

 Score = 288 (106.4 bits), Expect = 5.2e-46, Sum P(3) = 5.2e-46
 Identities = 89/289 (30%), Positives = 133/289 (46%)

Query:    72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD------DGKMPTGRAKILDDRSL 125
             P  + +PSD  V  G      C+  G P PT+ W +D      D   P     +L   SL
Sbjct:    32 PRIVEDPSDLIVSKGEPATLNCKAEGRPAPTVQWYKDGEHVETDKDDPRSHRMLLPSGSL 91

Query:   126 QIENV--GPQ---DEGLYICDVENLVG-SISLRASLTVHLLRDDFRAEPKDTRVASGETA 179
                 +  G +   DEG+Y C   N +G ++S  ASL V +LRDDFR  P D  VA+GE A
Sbjct:    92 FFLRIVHGRRSKPDEGVYTCVARNYLGEAVSRNASLEVAILRDDFRQPPNDVVVAAGEPA 151

Query:   180 LLECGPPKGQPEPTLHWKKNGQFI-DLESSKSLDLSRRTLGWLRVRP--LY----WNVAR 232
             +L+C PP+G PEPT+ WK+N   + D +   S+   +  +   R     +Y     N+  
Sbjct:   152 VLDCVPPRGHPEPTVSWKRNNVRVSDKDGRISMRGGKLIISHTRKSDAGMYVCVGTNMVG 211

Query:   233 PR----ANL-----NPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLM 283
              R    A L      P +I R+  + ++     V+ L C   G P P+V W ++  ++  
Sbjct:   212 ERDSDPAELVVFAERPVFI-RRPVNQIVLAEESVDFL-CEVHGDPAPTVRWNRDQGEL-- 267

Query:   284 FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332
              P    G   +  + +L +  V+ ED G + C   +  G T   A LQV
Sbjct:   268 -PR---GRFEIRSDNSLHLTRVRAEDEGTYTCVTENSVGKTEASAVLQV 312

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1SK64 ROBO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 259 (96.2 bits), Expect = 1.4e-47, Sum P(4) = 1.4e-47
 Identities = 61/196 (31%), Positives = 94/196 (47%)

Query:     9 HAHPMSSPRAEIEPAT-RTNRVSISGDPGFDSRRSRSIFGS-VLGARGALSDDQWKLIAK 66
             H  P  S + +  P   +  R++I G     +   +S  G  V      + + + ++   
Sbjct:    78 HPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAEL 137

Query:    67 EALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQ 126
               L +P  +  PS+  V      EF C   GDP+PT+ WR+DDG++P  R +I DD +L+
Sbjct:   138 TVLERPSFVKRPSNLAVTVDDSAEFKCEARGDPVPTVRWRKDDGELPKSRYEIRDDHTLK 197

Query:   127 IENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDD--FRAEPKDTRVASGETALLECG 184
             I  V   D G Y C  EN+VG     A+LTV    +   F  +P+D  VA G T   +C 
Sbjct:   198 IRKVMAGDMGSYTCVAENMVGKAEASATLTVQAPSEPPHFVVKPRDQVVALGRTVTFQC- 256

Query:   185 PPKGQPEPTLHWKKNG 200
                G P+P + W++ G
Sbjct:   257 EATGNPQPAIFWRREG 272

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=IEA

GO:0060763 "mammary duct terminal end bud growth" evidence=IEA

GO:0050925 "negative regulation of negative chemotaxis" evidence=IEA

GO:0050772 "positive regulation of axonogenesis" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0035385 "Roundabout signaling pathway" evidence=IEA

GO:0033600 "negative regulation of mammary gland epithelial cell proliferation" evidence=IEA

GO:0030673 "axolemma" evidence=IEA

GO:0030275 "LRR domain binding" evidence=IEA

GO:0021836 "chemorepulsion involved in postnatal olfactory bulb interneuron migration" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0002042 "cell migration involved in sprouting angiogenesis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-000209-3 robo1 "roundabout homolog 1" [Danio rerio (taxid:7955)]

 Score = 309 (113.8 bits), Expect = 6.1e-45, Sum P(2) = 6.1e-45
 Identities = 93/299 (31%), Positives = 142/299 (47%)

Query:    72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAK------ILDDRSL 125
             P  +  PSD  V  G      C+  G P PT+ W +D  ++ T R        +L   SL
Sbjct:    30 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTVEWYKDGERVETDRDNPRSHRMLLPTGSL 89

Query:   126 QIENV--GPQ---DEGLYICDVENLVG-SISLRASLTVHLLRDDFRAEPKDTRVASGETA 179
                 +  G +   DEG Y+C   N +G ++S  ASL V +LRDDFR  P D  VA+GE A
Sbjct:    90 FFLRIVHGRRSKPDEGSYVCVARNYLGEAVSHNASLEVAILRDDFRQNPVDVMVAAGEPA 149

Query:   180 LLECGPPKGQPEPTLHWKKNGQFID-------LESSK-SLDLSRRT-------LGWLRVR 224
             ++EC PP+G PEPT+ WKK+G  ID       +   K  +  +R+T       +G   + 
Sbjct:   150 VMECQPPRGHPEPTISWKKDGVNIDDRDERITIRGGKLMITNTRKTDAGKYVCVGTNMMG 209

Query:   225 PLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMF 284
                  +A       P ++ RK +S  +     V    C A+G P+P++ W +E  ++   
Sbjct:   210 ERESEIAELTVLERPSFL-RKPSSQSVLVDQSVE-FRCEAQGDPVPTIRWRKEDGEL--- 264

Query:   285 PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE---FCVLPK 340
             P   Y    + ++ TL+++ +   DAG + C A ++ G T   A L V     F V P+
Sbjct:   265 PKGRY---EIWEDHTLKLKRLTSGDAGTYTCQAENMMGKTEASATLTVHVPPVFVVRPR 320

GO:0003262 "endocardial progenitor cell migration to the midline involved in heart field formation" evidence=IGI

GO:0016021 "integral to membrane" evidence=IEA

GO:0007411 "axon guidance" evidence=IGI;IMP

UNIPROTKB|F1NR29 ROBO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 249 (92.7 bits), Expect = 6.7e-47, Sum P(4) = 6.7e-47
 Identities = 59/196 (30%), Positives = 93/196 (47%)

Query:     9 HAHPMSSPRAEIEPAT-RTNRVSISGDPGFDSRRSRSIFGS-VLGARGALSDDQWKLIAK 66
             H  P  S + +  P   +  R++I G     +   ++  G  V      + + + ++   
Sbjct:    40 HPEPTISWKKDGTPLDDKDERITIRGGKLMITYTRKNDAGKYVCVGTNMVGERESEVAEL 99

Query:    67 EALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQ 126
               L +P  +  PS+  V      EF C   GDP+PT+ WR+DDG++P  R +I DD +L+
Sbjct:   100 TVLERPSFVKRPSNLAVTVDDSAEFKCEARGDPVPTVRWRKDDGELPKARYEIRDDHTLK 159

Query:   127 IENVGPQDEGLYICDVENLVGSISLRASLTVHLLRD--DFRAEPKDTRVASGETALLECG 184
             I  V   D G Y C  EN+VG     A+LTV    +   F  +P+D   A G T   +C 
Sbjct:   160 IRKVMAGDMGSYTCVAENMVGKAEASATLTVQEGSEPPQFVVKPRDQVAALGRTVTFQC- 218

Query:   185 PPKGQPEPTLHWKKNG 200
                G P+P + W++ G
Sbjct:   219 EATGNPQPAIFWRREG 234

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0041097 robo3 "robo3" [Drosophila melanogaster (taxid:7227)]

 Score = 289 (106.8 bits), Expect = 2.2e-45, Sum P(2) = 2.2e-45
 Identities = 92/286 (32%), Positives = 134/286 (46%)

Query:    72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG--KMPTGRAKILDDRS----L 125
             P  +  P D TV         C+  G P PTI W +D    K+  G  +I         L
Sbjct:    23 PRIVEHPIDTTVPRHEPATLNCKAEGSPTPTIQWYKDGVPLKILPGSHRITLPAGGLFFL 82

Query:   126 QIENVGPQ-DEGLYICDVENLVG-SISLRASLTVHLLRDDFRAEPKDTRVASGETALLEC 183
             ++ N   + D G+Y C+ +N +G + S  A+L V +LRD+FR EP++TR+A G+TALLEC
Sbjct:    83 KVVNSRRETDAGIYWCEAKNELGVARSRNATLQVAVLRDEFRLEPQNTRIAQGDTALLEC 142

Query:   184 GPPKGQPEPTLHWKKNGQFIDLESSKSLDL-SRRTLGWLRVRPLYWNVARPRANLNPRYI 242
               P+G PEPT+ WKK GQ +DLE SK + +     L     R       +  A  NP  +
Sbjct:   143 AAPRGIPEPTVTWKKGGQKLDLEGSKRVRIVDGGNLAIQDARQTDEGQYQCIAK-NPVGV 201

Query:   243 GRK-MASLLIWNHPRVNR--------------LSCFAEGSPLPSVFWTQEGSQVLMFPGN 287
                 +A+L +   P + R                C   G P+P V W +  S      GN
Sbjct:   202 RESSLATLKVHVKPYIIRGPHDQTVLEGASVTFPCRVGGDPMPDVLWLRTASG-----GN 256

Query:   288 A-YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332
                  + V ++ +LR++ V   D G + C A +V G+ T    L V
Sbjct:   257 MPLDRVSVLEDRSLRLERVTIADEGEYSCEADNVVGAITAMGTLTV 302

GO:0007419 "ventral cord development" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP;TAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0008046 "axon guidance receptor activity" evidence=NAS

GO:0008038 "neuron recognition" evidence=IMP

GO:0048036 "central complex development" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

UNIPROTKB|F1NTM1 ROBO2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 297 (109.6 bits), Expect = 2.8e-45, Sum P(3) = 2.8e-45
 Identities = 94/301 (31%), Positives = 137/301 (45%)

Query:    72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM------PTGRAKILDDRSL 125
             P  +  PSD  V  G      C+  G P PTI W +D  ++      P     +L   SL
Sbjct:    11 PRIVEHPSDVIVSKGEPTTLNCKAEGRPTPTIEWYKDGERVETDKDDPRSHRMLLPSGSL 70

Query:   126 QIENV--GPQ---DEGLYICDVENLVG-SISLRASLTVHLLRDDFRAEPKDTRVASGETA 179
                 +  G +   DEG Y+C   N +G ++S  ASL V LLRDDFR  P D  VA+GE A
Sbjct:    71 FFLRIVHGRRSKPDEGSYVCVARNYLGEAVSRNASLEVALLRDDFRQNPTDVVVAAGEPA 130

Query:   180 LLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNP 239
             +LEC PP+G PEPT++WKK+   ID    +   +S R  G L +     + A     +  
Sbjct:   131 ILECQPPRGHPEPTIYWKKDKVRIDDREER---ISIRG-GKLMISNTRKSDAGMYTCVGT 186

Query:   240 RYIGRK---MASLLIWNHPR-----VNRL---------SCFAEGSPLPSVFWTQEGSQVL 282
               +G +    A L ++  P      +N++          C  +G P P+V W ++ + + 
Sbjct:   187 NMVGERDSDPAELTVFERPTFLRRPINQVVLEEEAVDFRCQVQGDPQPTVRWKKDDADL- 245

Query:   283 MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR---EFCVLP 339
               P   Y    +  + TLRI+     D G + C A +  G     A L VR   +F V P
Sbjct:   246 --PRGRYD---IKDDYTLRIKKAMSTDEGTYTCIAENRVGKVEASATLTVRAPPQFVVRP 300

Query:   340 K 340
             +
Sbjct:   301 R 301

GO:0001656 "metanephros development" evidence=IEA

GO:0001657 "ureteric bud development" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0030673 "axolemma" evidence=IEA

GO:0032870 "cellular response to hormone stimulus" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0050772 "positive regulation of axonogenesis" evidence=IEA

GO:0050925 "negative regulation of negative chemotaxis" evidence=IEA

GO:0061364 "apoptotic process involved in luteolysis" evidence=IEA

MGI|MGI:1890110 Robo2 "roundabout homolog 2 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 300 (110.7 bits), Expect = 9.5e-45, Sum P(3) = 9.5e-45
 Identities = 95/297 (31%), Positives = 135/297 (45%)

Query:    72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM------PTGRAKILDDRSL 125
             P  +  PSD  V  G      C+  G P PTI W +D  ++      P     +L   SL
Sbjct:    31 PRIVEHPSDVIVSKGEPTTLNCKAEGRPTPTIEWYKDGERVETDKDDPRSHRMLLPSGSL 90

Query:   126 QIENV--GPQ---DEGLYICDVENLVG-SISLRASLTVHLLRDDFRAEPKDTRVASGETA 179
                 +  G +   DEG Y+C   N +G ++S  ASL V LLRDDFR  P D  VA+GE A
Sbjct:    91 FFLRIVHGRRSKPDEGSYVCVARNYLGEAVSRNASLEVALLRDDFRQNPTDVVVAAGEPA 150

Query:   180 LLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNP 239
             +LEC PP+G PEPT++WKK+   ID    K   +S R  G L +     + A     +  
Sbjct:   151 ILECQPPRGHPEPTIYWKKDKVRID---DKEERISIRG-GKLMISNTRKSDAGMYTCVGT 206

Query:   240 RYIGRK---MASLLIWNHPR-----VNRL---------SCFAEGSPLPSVFWTQEGSQVL 282
               +G +    A L ++  P      +N++          C  +G P P+V W ++ + + 
Sbjct:   207 NMVGERDSDPAELTVFERPTFLRRPINQVVLEEEAVEFRCQVQGDPQPTVRWKKDDADL- 265

Query:   283 MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLP 339
               P   Y    +  + TLRI+     D G +VC A +  G     A L VR   V P
Sbjct:   266 --PRGRYD---IKDDYTLRIKKAMSTDEGTYVCIAENRVGKVEASATLTVRVRPVAP 317

GO:0001656 "metanephros development" evidence=IMP

GO:0001657 "ureteric bud development" evidence=ISO;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006935 "chemotaxis" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007411 "axon guidance" evidence=ISO;IMP

GO:0008046 "axon guidance receptor activity" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016199 "axon midline choice point recognition" evidence=IGI

GO:0021891 "olfactory bulb interneuron development" evidence=IMP

GO:0030154 "cell differentiation" evidence=IEA

GO:0030673 "axolemma" evidence=IDA

GO:0031290 "retinal ganglion cell axon guidance" evidence=IMP

GO:0042802 "identical protein binding" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0050772 "positive regulation of axonogenesis" evidence=ISO

GO:0050925 "negative regulation of negative chemotaxis" evidence=ISO

UNIPROTKB|Q9HCK4 ROBO2 "Roundabout homolog 2" [Homo sapiens (taxid:9606)]

 Score = 299 (110.3 bits), Expect = 4.0e-44, Sum P(3) = 4.0e-44
 Identities = 95/301 (31%), Positives = 138/301 (45%)

Query:    72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM------PTGRAKILDDRSL 125
             P  +  PSD  V  G      C+  G P PTI W +D  ++      P     +L   SL
Sbjct:    31 PRIVEHPSDVIVSKGEPTTLNCKAEGRPTPTIEWYKDGERVETDKDDPRSHRMLLPSGSL 90

Query:   126 QIENV--GPQ---DEGLYICDVENLVG-SISLRASLTVHLLRDDFRAEPKDTRVASGETA 179
                 +  G +   DEG Y+C   N +G ++S  ASL V LLRDDFR  P D  VA+GE A
Sbjct:    91 FFLRIVHGRRSKPDEGSYVCVARNYLGEAVSRNASLEVALLRDDFRQNPTDVVVAAGEPA 150

Query:   180 LLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNP 239
             +LEC PP+G PEPT++WKK+   ID    K   +S R  G L +     + A     +  
Sbjct:   151 ILECQPPRGHPEPTIYWKKDKVRID---DKEERISIRG-GKLMISNTRKSDAGMYTCVGT 206

Query:   240 RYIGRK---MASLLIWNHPR-----VNRL---------SCFAEGSPLPSVFWTQEGSQVL 282
               +G +    A L ++  P      +N++          C  +G P P+V W ++ + + 
Sbjct:   207 NMVGERDSDPAELTVFERPTFLRRPINQVVLEEEAVEFRCQVQGDPQPTVRWKKDDADL- 265

Query:   283 MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR---EFCVLP 339
               P   Y    +  + TLRI+     D G ++C A +  G     A L VR   +F V P
Sbjct:   266 --PRGRYD---IKDDYTLRIKKTMSTDEGTYMCIAENRVGKMEASATLTVRAPPQFVVRP 320

Query:   340 K 340
             +
Sbjct:   321 R 321

GO:0016021 "integral to membrane" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0008046 "axon guidance receptor activity" evidence=ISS;NAS

GO:0007417 "central nervous system development" evidence=NAS

GO:0050772 "positive regulation of axonogenesis" evidence=IDA

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0007420 "brain development" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0001656 "metanephros development" evidence=ISS

GO:0007411 "axon guidance" evidence=ISS;TAS

GO:0030673 "axolemma" evidence=ISS

GO:0031290 "retinal ganglion cell axon guidance" evidence=ISS

GO:0016199 "axon midline choice point recognition" evidence=ISS

GO:0001657 "ureteric bud development" evidence=IMP

GO:0050925 "negative regulation of negative chemotaxis" evidence=IDA

GO:0021891 "olfactory bulb interneuron development" evidence=ISS

GO:0061364 "apoptotic process involved in luteolysis" evidence=IEP

GO:0032870 "cellular response to hormone stimulus" evidence=IEP

GO:0051964 "negative regulation of synapse assembly" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	633
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	3e-31
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	7e-19
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	4e-18
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-16
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	4e-15
smart00410	85	smart00410, IG_like, Immunoglobulin like	6e-15
smart00409	85	smart00409, IG, Immunoglobulin	6e-15
smart00060	83	smart00060, FN3, Fibronectin type 3 domain	2e-14
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	3e-14
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	2e-12
pfam00041	84	pfam00041, fn3, Fibronectin type III domain	3e-12
smart00410	85	smart00410, IG_like, Immunoglobulin like	3e-11
smart00409	85	smart00409, IG, Immunoglobulin	3e-11
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	3e-10
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	3e-10
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	6e-10
cd00096	74	cd00096, Ig, Immunoglobulin domain	2e-09
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	2e-09
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	6e-09
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	7e-09
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	1e-08
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	1e-08
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	2e-08
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	2e-08
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	2e-08
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	2e-08
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	4e-08
cd00096	74	cd00096, Ig, Immunoglobulin domain	6e-08
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	2e-07
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	3e-07
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	3e-07
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	5e-07
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	5e-07
pfam00047	62	pfam00047, ig, Immunoglobulin domain	5e-07
pfam00047	62	pfam00047, ig, Immunoglobulin domain	7e-07
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	8e-07
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	8e-07
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	1e-06
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	1e-06
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	1e-06
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	2e-06
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	2e-06
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	2e-06
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	3e-06
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	5e-06
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	6e-06
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	7e-06
cd05893	75	cd05893, Ig_Palladin_C, C-terminal immunoglobulin	8e-06
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	2e-05
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	2e-05
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	3e-05
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	5e-05
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	5e-05
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	7e-05
cd05870	98	cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik	9e-05
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-04
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	1e-04
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	2e-04
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	2e-04
cd04979	89	cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like	2e-04
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	3e-04
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	3e-04
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	4e-04
cd05894	86	cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma	4e-04
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	6e-04
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	6e-04
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	6e-04
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	8e-04
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	0.001
cd05892	75	cd05892, Ig_Myotilin_C, C-terminal immunoglobulin	0.001
cd04974	90	cd04974, Ig3_FGFR, Third immunoglobulin (Ig)-like	0.001
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	0.002
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	0.002
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	0.002
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	0.002
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	0.003
cd05893	75	cd05893, Ig_Palladin_C, C-terminal immunoglobulin	0.003
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	0.003
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	0.003
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	0.003
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	0.004
cd05858	90	cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-lik	0.004

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score =  115 bits (291), Expect = 3e-31
 Identities = 44/69 (63%), Positives = 55/69 (79%)

Query: 89  VEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS 148
           VEF C VGGDP+PT+LWR++DG++P GRA+ILDD+SL+I NV   DEG Y C+ EN+VG 
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGK 60

Query: 149 ISLRASLTV 157
           I   ASLTV
Sbjct: 61  IEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 81.4 bits (201), Expect = 7e-19
 Identities = 37/95 (38%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P PP    + + T  SVTL W  PE  GG   P+ GY VEY          V     + T
Sbjct: 1   PSPPTNLRVTDVTSTSVTLSWTPPEDDGG---PITGYVVEYREKGSGDWKEVEVTPGSET 57

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
           S T++ LKP T Y F VRA N  G   PS    +T
Sbjct: 58  SYTLTGLKPGTEYEFRVRAVNGGGESPPSESVTVT 92

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 79.2 bits (195), Expect = 4e-18
 Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 3/76 (3%)

Query: 262 CFAEGSPLPSVFWTQEGSQVLMFPGN---AYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           C A G+P P++FW +EGSQ L+F      +     V+Q G L I  VQ+ D G+++C  L
Sbjct: 8   CEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTL 67

Query: 319 SVAGSTTVRAFLQVRE 334
           +VAGS   +A+L+V +
Sbjct: 68  NVAGSILTKAYLEVTD 83

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 75.0 bits (185), Expect = 1e-16
 Identities = 32/84 (38%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 78  PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKIL---DDRSLQIENVGPQ 133
           P D  V  G    F C V GDP PT+ W +D   +  + R K+       +L I NV P 
Sbjct: 7   PKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQPD 66

Query: 134 DEGLYICDVENLVGSISLRASLTV 157
           DEG Y C   N  G     A LTV
Sbjct: 67  DEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 70.5 bits (173), Expect = 4e-15
 Identities = 24/43 (55%), Positives = 35/43 (81%)

Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 209
           EP DT+VA GE A+LEC PP+G PEPT+ W+K+GQ ++L++ +
Sbjct: 2   EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNER 44

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 70.2 bits (172), Expect = 6e-15
 Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 78  PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR-----SLQIENVGP 132
           P   TV  G  V   C   G P P + W +  GK+     +    R     +L I NV P
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 133 QDEGLYICDVENLVGSISLRASLTV 157
           +D G Y C   N  GS S   +LTV
Sbjct: 61  EDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 70.2 bits (172), Expect = 6e-15
 Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 78  PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR-----SLQIENVGP 132
           P   TV  G  V   C   G P P + W +  GK+     +    R     +L I NV P
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 133 QDEGLYICDVENLVGSISLRASLTV 157
           +D G Y C   N  GS S   +LTV
Sbjct: 61  EDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain

 Score = 68.8 bits (168), Expect = 2e-14
 Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P PP+   + + T  SVTL W  P P  G    ++GY VEY   +  + W       +ST
Sbjct: 1   PSPPSNLRVTDVTSTSVTLSWEPP-PDDGITGYIVGYRVEY--REEGSEWKEVNVTPSST 57

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLG 495
           S T++ LKP T Y F VRA N  G G
Sbjct: 58  SYTLTGLKPGTEYEFRVRAVNGAGEG 83

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 68.3 bits (167), Expect = 3e-14
 Identities = 28/81 (34%), Positives = 41/81 (50%)

Query: 78  PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGL 137
           P D   L G  V   C   G+P+P I WR+ DG MP+     +    L+I N+  +DEG 
Sbjct: 8   PKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGT 67

Query: 138 YICDVENLVGSISLRASLTVH 158
           Y C+ EN+ G  + +  + V 
Sbjct: 68  YECEAENIKGKDTHQGRIYVQ 88

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 21/63 (33%), Positives = 30/63 (47%)

Query: 85  SGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVEN 144
            G  V   C   G+P+P I W +D   +P     +    +L I++V  +D GLY C  EN
Sbjct: 1   EGQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGSTLTIKSVSLEDSGLYTCVAEN 60

Query: 145 LVG 147
             G
Sbjct: 61  SAG 63

Length = 63

>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain

 Score = 62.1 bits (151), Expect = 3e-12
 Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTS 470
             P    + + T  S+TL W  P   G    P+ GY VEY   +    W       T+TS
Sbjct: 1   SAPTNLTVTDVTSTSLTLSWSPPPGNG----PITGYEVEYRPVNGGEEWKEITVPGTTTS 56

Query: 471 ITVSDLKPDTSYMFIVRAENSHGLGIPS 498
            T++ LKP T Y   V+A N  G G PS
Sbjct: 57  YTLTGLKPGTEYEVRVQAVNGAGEGPPS 84

Length = 84

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 59.4 bits (144), Expect = 3e-11
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            LSC A GSP P V W ++G ++L   G            TL I  V  ED+G + C+A 
Sbjct: 13  TLSCEASGSPPPEVTWYKQGGKLLAESGRFSVS-RSGSTSTLTISNVTPEDSGTYTCAAT 71

Query: 319 SVAGSTTVRAFLQV 332
           + +GS +    L V
Sbjct: 72  NSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 59.4 bits (144), Expect = 3e-11
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            LSC A GSP P V W ++G ++L   G            TL I  V  ED+G + C+A 
Sbjct: 13  TLSCEASGSPPPEVTWYKQGGKLLAESGRFSVS-RSGSTSTLTISNVTPEDSGTYTCAAT 71

Query: 319 SVAGSTTVRAFLQV 332
           + +GS +    L V
Sbjct: 72  NSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 56.9 bits (138), Expect = 3e-10
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 8/77 (10%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
           R +C   G P P+V W ++G  +      +     VT EG   TL I  VQ +D G + C
Sbjct: 19  RFTCTVTGDPDPTVSWFKDGQPL-----RSSDRFKVTYEGGTYTLTISNVQPDDEGKYTC 73

Query: 316 SALSVAGSTTVRAFLQV 332
            A + AG     A L V
Sbjct: 74  VATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 93  CRVGGDPLPTILWRRDDGKMPTGRAKILD-DRSLQIENVGPQDEGLYICDVENLVGSISL 151
           C   G P P I W +  G++P  R K  + +++L+I+NV  +D+G Y C   N +GS   
Sbjct: 5   CIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARH 64

Query: 152 RASLTV 157
             S+TV
Sbjct: 65  TISVTV 70

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 55.1 bits (133), Expect = 6e-10
 Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 93  CRVGGDPLPTILWRRDDGKMP-TGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISL 151
           C+    P PTI W +    +  + R  I  D SL+I NV   DEG Y C  EN  G  + 
Sbjct: 8   CKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANS 67

Query: 152 RASLTV 157
             SL+V
Sbjct: 68  TGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 54.0 bits (129), Expect = 2e-09
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 8/74 (10%)

Query: 89  VEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR--------SLQIENVGPQDEGLYIC 140
           V   C   G P PTI W ++   +P+     +           +L I NV  +D G Y C
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 141 DVENLVGSISLRAS 154
              N  G++S   +
Sbjct: 61  VASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 53.8 bits (129), Expect = 2e-09
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 89  VEFVCRVGGDPLPTILWRRD-DGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVG 147
           + F C V G P PT+ W ++ D  +P+   KI+ + +LQ+  +   DEG Y C  EN VG
Sbjct: 2   IVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVG 61

Query: 148 SISLRASLTV 157
           ++   A L +
Sbjct: 62  NVQAGAQLII 71

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 52.6 bits (126), Expect = 6e-09
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 86  GSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAK-ILDDRSLQIENVGPQDEGLYICDVEN 144
           G  V+F+C   G P P I W +   ++   R   +L   +L+I  V   D+G Y C   N
Sbjct: 2   GQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVN 61

Query: 145 LVGSISLRASLTV 157
           +VGS    A LTV
Sbjct: 62  IVGSQRTVAQLTV 74

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 52.2 bits (125), Expect = 7e-09
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 93  CRVGGDPLPTILWRRDDGKMPTGRAKILD-DRSLQIENVGPQDEGLYICDVENLVGSISL 151
           C   G P P + W R DG +   R K L+ +++LQ++NV   D+G Y+C  EN  GS   
Sbjct: 5   CIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARH 64

Query: 152 RASLTV 157
             ++TV
Sbjct: 65  HYTVTV 70

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 27/70 (38%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 85  SGSVVEFVCRVGGDPLPTILWRRDDG-KMPTGRAKILDDR----SLQIENVGPQDEGLYI 139
           +GS V   C   G+P PTI W +D        R      R    +L +E+V P D G Y 
Sbjct: 8   AGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYT 67

Query: 140 CDVENLVGSI 149
           C VEN  GSI
Sbjct: 68  CIVENKYGSI 77

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 51.5 bits (123), Expect = 1e-08
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query: 93  CRVGGDPLPTILWRRDDG-KMPTGRAKIL----DDRSLQIENVGPQDEGLYICDVENLVG 147
           C   G P P I W++D G   P  R + +    +D    I +V  +D G+Y C  +N  G
Sbjct: 5   CAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAG 64

Query: 148 SISLRASLTV 157
           SIS  A+LTV
Sbjct: 65  SISANATLTV 74

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 77  EPSDATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKM--PTGRAKILDDRSLQIENVGPQ 133
           EPSD  V  G +    C    G P PT+ WR+D   +     R +I+DD +L I      
Sbjct: 2   EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKS 61

Query: 134 DEGLYICDVENLVGS-ISLRASLTV 157
           DEG Y C   N+VG   S  A L+V
Sbjct: 62  DEGTYKCVATNMVGERESAAARLSV 86

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 51.4 bits (123), Expect = 2e-08
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           ++ C A+G P P++ W ++G QV        G  H++ EG L I+ V   D G + C A 
Sbjct: 2   QIPCSAQGDPEPTITWNKDGVQV-----TESGKFHISPEGYLAIRDVGVADQGRYECVAR 56

Query: 319 SVAGSTTV 326
           +  G  +V
Sbjct: 57  NTIGYASV 64

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 51.9 bits (124), Expect = 2e-08
 Identities = 27/79 (34%), Positives = 38/79 (48%)

Query: 80  DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYI 139
           D   L G  V   C   G+P+P I WR+    MP      +    L+I N+ P+DEG Y 
Sbjct: 10  DTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYE 69

Query: 140 CDVENLVGSISLRASLTVH 158
           C+ EN+ G    +A + V 
Sbjct: 70  CEAENIKGKDKHQARVYVQ 88

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 51.4 bits (123), Expect = 2e-08
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 75  ISEPSDATVLSGSVVEFVCR-VGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQ 133
           + EP    V  G+ V F+CR     P  T++W R  G +P+ RA   +   L I NV   
Sbjct: 5   VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS-RAMDFNGI-LTIRNVQLS 62

Query: 134 DEGLYICDVENLVGSISLRASL 155
           D G Y+C   N++ +    A+L
Sbjct: 63  DAGTYVCTGSNMLDTDEATATL 84

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 10/93 (10%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRSLQIENV- 130
           +SEPSD   + G  V   C   G+P P I W++D   +      R + L + SL I +V 
Sbjct: 3   LSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVV 62

Query: 131 ----GPQDEGLYICDVEN-LVGSI-SLRASLTV 157
                  DEG Y C  +N  +GSI S  A LTV
Sbjct: 63  HSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV 95

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 49.8 bits (118), Expect = 6e-08
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVL--MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 316
            L+C A G P P++ W + G  +   +           +   TL I  V  ED+G + C 
Sbjct: 2   TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCV 61

Query: 317 ALSVAGSTTVRA 328
           A + AG+ +   
Sbjct: 62  ASNSAGTVSASV 73

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            L+C AEG+P+P++ W ++G  +         +  V    TL I+ V  ED+G + C A 
Sbjct: 6   TLTCPAEGNPVPNITWLKDGKPL------PESNRFVASGSTLTIKSVSLEDSGLYTCVAE 59

Query: 319 SVAG 322
           + AG
Sbjct: 60  NSAG 63

Length = 63

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 48.0 bits (114), Expect = 3e-07
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV-TQEGTLRIQGVQKEDAGFFVCSA 317
           RL C A G P P + W ++G     FP      +HV  ++    I  V+ ED G + C+A
Sbjct: 2   RLECAATGHPTPQIAWQKDGG--TDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTA 59

Query: 318 LSVAGSTTVRAFLQV 332
            + AGS +  A L V
Sbjct: 60  QNTAGSISANATLTV 74

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 47.9 bits (114), Expect = 3e-07
 Identities = 22/74 (29%), Positives = 31/74 (41%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           RL C     P P +FW +    +         +        L IQ   KEDAG++  SA+
Sbjct: 2   RLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAV 61

Query: 319 SVAGSTTVRAFLQV 332
           + AG  +  A L V
Sbjct: 62  NEAGVVSCNARLDV 75

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 47.0 bits (112), Expect = 5e-07
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319
             C   G P+P+V W +E  ++        G   +  + +L+I+ V   D G + C A +
Sbjct: 3   FQCEVGGDPVPTVLWRKEDGEL------PKGRAEILDDKSLKIRNVTAGDEGSYTCEAEN 56

Query: 320 VAGSTTVRAFLQV 332
           + G     A L V
Sbjct: 57  MVGKIEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 47.2 bits (112), Expect = 5e-07
 Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 262 CFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 321
           C A+G P P + WT+ GSQ+ +       HL V   GTLRI  V   D G + C A+++ 
Sbjct: 9   CEAQGYPQPVIAWTKGGSQLSV----DRRHL-VLSSGTLRISRVALHDQGQYECQAVNIV 63

Query: 322 GSTTVRAFLQV 332
           GS    A L V
Sbjct: 64  GSQRTVAQLTV 74

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 46.8 bits (111), Expect = 5e-07
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 317
            L+C   G P   V W +EG  +           +     TL I  V  ED+G + C  
Sbjct: 5   TLTCSVSGPPQVDVTWFKEGKGLE-ESTTVGTDENRVSSITLTISNVTPEDSGTYTCVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 46.4 bits (110), Expect = 7e-07
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 86  GSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR-----SLQIENVGPQDEGLYIC 140
           GS V   C V G P   + W ++   +        D+      +L I NV P+D G Y C
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTC 60

Query: 141 DV 142
            V
Sbjct: 61  VV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 46.4 bits (110), Expect = 8e-07
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 89  VEFVCRVGGDPLPTILWRRDDGKMP-TGRAKILDDRSLQIENVGPQDEGLYICDVENLVG 147
           V+  C   GDP PTI W +D  ++  +G+  I  +  L I +VG  D+G Y C   N +G
Sbjct: 1   VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIG 60

Query: 148 SISLRASLT 156
             S+   L+
Sbjct: 61  YASVSMVLS 69

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 46.8 bits (111), Expect = 8e-07
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 9/65 (13%)

Query: 93  CRVGGDPLPTILWRRDDGK---------MPTGRAKILDDRSLQIENVGPQDEGLYICDVE 143
           C   G P PTI+W+   G+            GR ++L + SL I++V  +D G Y+C V 
Sbjct: 5   CSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVS 64

Query: 144 NLVGS 148
           N VG+
Sbjct: 65  NDVGA 69

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 9/81 (11%)

Query: 86  GSVVEFVCRVGGDPLPTILWRRDDGK---------MPTGRAKILDDRSLQIENVGPQDEG 136
           G  V F C   G+P P I W+++  +           + R  +     L I NV   D G
Sbjct: 1   GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVG 60

Query: 137 LYICDVENLVGSISLRASLTV 157
            YIC   N+ GSI  +A L V
Sbjct: 61  YYICQTLNVAGSILTKAYLEV 81

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 74  PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQ 133
           P+  PS   V  G  V   C   G+P P   W +D   + + +            NV  +
Sbjct: 2   PVLTPSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFF------TPNVSAE 55

Query: 134 DEGLYICDVENLVGSI-SLRASLTV 157
           D G Y C   N  G   S   +LTV
Sbjct: 56  DSGTYTCVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 86  GSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR----SLQIENVGPQDEGLYICD 141
           G  VEF C   G P P I WR + G +P      +       +L I +V   D+G Y C+
Sbjct: 1   GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCE 60

Query: 142 VENLVGSI 149
             N  G +
Sbjct: 61  AINTRGMV 68

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 7/81 (8%)

Query: 83  VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKI------LDDRSLQIENVGPQDEG 136
           V + + V+F C   G+P PT+ W ++ GK      +I          SL +E+V P D+G
Sbjct: 6   VPAANTVKFRCPAAGNPTPTMRWLKN-GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 64

Query: 137 LYICDVENLVGSISLRASLTV 157
            Y C VEN  GSI+    L V
Sbjct: 65  NYTCVVENEYGSINHTYHLDV 85

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 12/98 (12%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD------DGKMPTGRAKILDDRSL 125
           P  +  PSD  V  G      C+  G P PTI W ++      D   P     +L   SL
Sbjct: 2   PRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSL 61

Query: 126 QIENV-----GPQDEGLYICDVENLVG-SISLRASLTV 157
               V     G  DEG+Y+C   N +G ++S  ASL V
Sbjct: 62  FFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 260 LSCFAEGSPLPSVFWTQE---GSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 316
             C   G P P + W ++      ++M P +  G++ VT  G L I   Q +DAG + C+
Sbjct: 6   FHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCT 65

Query: 317 ALSVAGSTTVRAFLQV 332
           A +  G       L V
Sbjct: 66  ARNSGGLLRANFPLSV 81

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 86  GSVVEFVCRVGGDPLPTILWRRDDGK----MPTGRAKILDDRSLQIENVGPQDEGLYICD 141
           G      C   G P PTI WR  +G     +P    + +D  +L + NV P D  +Y C+
Sbjct: 1   GETGRLDCEAEGIPQPTITWRL-NGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCN 59

Query: 142 VENLVGSISLRASLTV 157
             N+ G +   A + V
Sbjct: 60  ASNVHGYLLANAFVHV 75

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 86  GSVVEFVCRVGGDPLPTILWRRDDGKM--PTGRAKILDDRSLQIENVGPQDEGLYICDVE 143
           GS V   C   G+P P I W +D+  +             +L ++N+ P+D G Y C V 
Sbjct: 9   GSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVS 68

Query: 144 NLVGSI 149
           N  G I
Sbjct: 69  NRAGEI 74

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 44.9 bits (106), Expect = 6e-06
 Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 80  DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL--DDRS-LQIENVGPQDEG 136
           +AT   G  V   C   G P PT+ W +D   + +G  K    +D S + I +V   DE 
Sbjct: 12  NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEA 71

Query: 137 LYICDVENLVGSISLRASLTV 157
            Y C  EN  G       L V
Sbjct: 72  EYTCIAENKAGEQEAEIHLKV 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 44.4 bits (105), Expect = 7e-06
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 8/74 (10%)

Query: 260 LSCFAEGSPLPSVFWTQ-EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           L CFA G+P+P + W + +GS   M                L+I  +Q ED G + C A 
Sbjct: 21  LECFALGNPVPQIKWRKVDGS---MPSSA----EISMSGAVLKIPNIQFEDEGTYECEAE 73

Query: 319 SVAGSTTVRAFLQV 332
           ++ G  T +  + V
Sbjct: 74  NIKGKDTHQGRIYV 87

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin

 Score = 43.9 bits (103), Expect = 8e-06
 Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 14/81 (17%)

Query: 259 RLSCFAEGSPLPSVFW-------TQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAG 311
           RL C   G P P +FW       T    +V M   N  G++       L IQG  KEDAG
Sbjct: 2   RLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDN-CGYI------CLLIQGATKEDAG 54

Query: 312 FFVCSALSVAGSTTVRAFLQV 332
           ++  SA + AG  +  A L V
Sbjct: 55  WYTVSAKNEAGIVSCTARLDV 75

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 78  PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT-GRAKILDDRSLQIENVGPQDEG 136
            SD     GS + + C+  G+P P   W ++   + +  R ++     L+I  +   D G
Sbjct: 6   ISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAG-DLRITKLSLSDSG 64

Query: 137 LYICDVENLVGSISLRASLTV 157
           +Y C  EN  G+I   A L V
Sbjct: 65  MYQCVAENKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 89  VEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL---DDRSLQIENVGPQDEGLYICDVENL 145
           V   C + G P PT  W RD   +  G+        +R+L + + GP D GLY C   N 
Sbjct: 1   VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNA 60

Query: 146 VGSISLRASLTVHLL 160
            GS+    + T+ ++
Sbjct: 61  FGSVCSSQNFTLSII 75

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 75  ISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQ 133
           I+     +V SG  V   C   GG P PTI W R+               +L + +V  +
Sbjct: 4   ITVSPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTLTLSSVTSE 63

Query: 134 DEGLYICDVEN 144
           D G Y C   N
Sbjct: 64  DSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 41.7 bits (98), Expect = 5e-05
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 262 CFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 321
           C  + +P P++ W++ G+++L         + +  +G+L I  V K D G + C A +  
Sbjct: 8   CKPKAAPKPTISWSK-GTELLT----NSSRICIWPDGSLEILNVTKSDEGKYTCFAENFF 62

Query: 322 GSTTVRAFLQV 332
           G       L V
Sbjct: 63  GKANSTGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 9/82 (10%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRR------DDGKMPTGRAKILDD---RSL 125
           I+   + T +    +   C   GDP+P I WRR      +  K   GR  +       SL
Sbjct: 5   ITYLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSL 64

Query: 126 QIENVGPQDEGLYICDVENLVG 147
            +++V   D G Y C+  N +G
Sbjct: 65  TLKDVQLTDAGRYDCEASNRIG 86

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 41.6 bits (97), Expect = 7e-05
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD----DRSLQIENV 130
           +++P   TV  G    F C V G+P PT+ W R+   + + +   +       + +I  V
Sbjct: 7   LTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKV 66

Query: 131 GPQDEGLYICDVENLVGSISLRASLT 156
              DEG Y   VEN  G    + +LT
Sbjct: 67  QMSDEGNYTVVVENSEGKQEAQFTLT 92

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

 Score = 41.5 bits (97), Expect = 9e-05
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 11/84 (13%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRR--------DDGKMPTGRAKI---LDDR 123
           I +  + T +        C+  G+P+P I W+R        +  K P GR ++     + 
Sbjct: 5   IIQLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGES 64

Query: 124 SLQIENVGPQDEGLYICDVENLVG 147
           SL I++V   D G Y C+  + +G
Sbjct: 65  SLHIKDVKLSDSGRYDCEAASRIG 88

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 209
           F  +PKD  V  GE+A   C    G P+PT+ W K+GQ   L SS 
Sbjct: 3   FTQKPKDVEVQEGESARFTC-TVTGDPDPTVSWFKDGQ--PLRSSD 45

Length = 90

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 86  GSVVEFVCRVGGDPLPTILWRRDDGKM--PTGRAKILDDRSLQIENVGPQDEGLYICDVE 143
           G      C+  GDP P I W   DGK+   + R  + D+ +L I     +D G + C   
Sbjct: 1   GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIAS 60

Query: 144 NLVGSISLRASLTV 157
           N  G  +    L +
Sbjct: 61  NAAGEATATVELHI 74

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319
           L C AEG P P + W + G ++   P +     +  +  TL+I  V +ED G + C+A +
Sbjct: 3   LECIAEGLPTPEISWIKIGGEL---PADRTKFENFNK--TLKIDNVSEEDDGEYRCTASN 57

Query: 320 VAGSTT 325
             GS  
Sbjct: 58  SLGSAR 63

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 262 CFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 321
           C   G P P+V W + G  V+  P +   +  + +E  L++ G+ K D GF+ C A +  
Sbjct: 6   CEVTGKPTPTVKWVKNGDMVI--PSD---YFKIVKEHNLQVLGLVKSDEGFYQCIAENDV 60

Query: 322 GSTTVRAFL 330
           G+    A L
Sbjct: 61  GNVQAGAQL 69

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143180 cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like domain of semaphorin

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319
           L C  + S L SV W  +G   L         L VT++G L I+ V   DAG + C ++ 
Sbjct: 16  LECSPK-SNLASVVWLFQG-GPLQRKEEPEERLLVTEDGLL-IRSVSPADAGVYTCQSVE 72

Query: 320 VAGSTTVRAF 329
                T+  +
Sbjct: 73  HGFKQTLATY 82

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. Length = 89

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 27/81 (33%), Positives = 32/81 (39%), Gaps = 9/81 (11%)

Query: 86  GSVVEFVCRVGGDPLPTILWRRD-DGK-----MPT---GRAKILDDRSLQIENVGPQDEG 136
           G    F C V G P P I W +   GK      P    G   + +   L I N  PQD G
Sbjct: 1   GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAG 60

Query: 137 LYICDVENLVGSISLRASLTV 157
           LY C   N  G +     L+V
Sbjct: 61  LYTCTARNSGGLLRANFPLSV 81

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 4/90 (4%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR----SLQI 127
             P+  P+   V  G      C   G PLP + W      +   R   L+      +LQ+
Sbjct: 1   TIPVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQL 60

Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTV 157
            N+  + +    C  EN VG  ++   +TV
Sbjct: 61  SNITSETQTTVTCTAENPVGQANVSVQVTV 90

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 168 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
           P D  V+ G+ A L C   +G+P PT+ W KNGQ   LE+ K    S R +
Sbjct: 8   PSDLIVSKGDPATLNC-KAEGRPTPTIQWLKNGQ--PLETDKDDPRSHRIV 55

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 7/81 (8%)

Query: 82  TVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKI-----LDDRSLQIENVGPQDEG 136
            V++G+ +     + G+P PT+ W R D        ++      D  S  IE    +DEG
Sbjct: 6   VVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEG 65

Query: 137 LYICDVENLVGSISLRASLTV 157
           +Y   V N VG     ASL V
Sbjct: 66  VYTITVTNPVGEDH--ASLFV 84

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 175 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
            G++  L C P +G P P + W K+G+   L  S     S  TL
Sbjct: 1   EGQSVTLTC-PAEGNPVPNITWLKDGK--PLPESNRFVASGSTL 41

Length = 63

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 38.8 bits (90), Expect = 6e-04
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 10/76 (13%)

Query: 260 LSCFAEGSPLPSVFWTQEGSQVL-MFPGNAYGHLHVTQEGT-LRIQGVQKEDAGFFVCSA 317
           L CFA G+P+P + W     ++L   P  A     ++  G  L+I  +Q ED G + C A
Sbjct: 21  LECFALGNPVPVIRW----RKILEPMPATA----EISMSGAVLKIFNIQPEDEGTYECEA 72

Query: 318 LSVAGSTTVRAFLQVR 333
            ++ G    +A + V+
Sbjct: 73  ENIKGKDKHQARVYVQ 88

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 38.5 bits (89), Expect = 6e-04
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 93  CRVGGDPLPTILWRRDDGKMPT---GRAKILDDRSLQIENVGPQDEGLYICDVENLVGS- 148
           C   G+P P I W +D   + T   GR K L   +LQIEN    D+G Y C   N  G+ 
Sbjct: 5   CAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTR 64

Query: 149 ISLRASLTV 157
            S  A+L V
Sbjct: 65  YSAPANLYV 73

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 89  VEFVCRVGGDPLPTILWRRDDGKMP--TGRAKILDDRS----LQIENVGPQDEGLYICDV 142
           V   CRV   P P I W++++  +   T R  +  D      L I+N   +D G Y    
Sbjct: 1   VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSA 60

Query: 143 ENLVGSISLRASLTV 157
            N  G +S  A L V
Sbjct: 61  VNEAGVVSCNARLDV 75

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 15/82 (18%)

Query: 260 LSCFAEGSPLPSVFWTQ------EGSQVLMFPGNAYGHLHV---TQEGTLRIQGVQKEDA 310
           L+C AEG P+P + W +      EG + L       G + V    +  +L ++ VQ  DA
Sbjct: 21  LTCEAEGDPIPEITWRRATRNFSEGDKSLD------GRIVVRGHARVSSLTLKDVQLTDA 74

Query: 311 GFFVCSALSVAGSTTVRAFLQV 332
           G + C A +  G      +L+V
Sbjct: 75  GRYDCEASNRIGGDQQSMYLEV 96

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain of myotilin

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLH-VTQEGTLRIQGVQKEDAGFFVCSA 317
           +L C     P P +FW +  ++++ +  +        +   TL I+ V K+DAG++  SA
Sbjct: 2   KLECQISAIPPPKIFW-KRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSA 60

Query: 318 LSVAGSTTVRAFLQV 332
           ++ AG  T  A L V
Sbjct: 61  VNEAGVATCHARLDV 75

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. Length = 75

>gnl|CDD|143175 cd04974, Ig3_FGFR, Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 28/90 (31%), Positives = 34/90 (37%), Gaps = 17/90 (18%)

Query: 86  GSVVEFVCRVGGDPLPTILWRR----------DDGK-----MPTGRAKILDDRS--LQIE 128
           GS VEF C+V  D  P I W +           DG      +        D+ S  L + 
Sbjct: 1   GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLR 60

Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVH 158
           NV   D G Y C   N +G     A LTV 
Sbjct: 61  NVSFDDAGEYTCLAGNSIGPSHHSAWLTVL 90

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. Length = 90

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           RL C AEG P P++ W   G  +   P +    +     GTL +  VQ  D   + C+A 
Sbjct: 5   RLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVD---GGTLILSNVQPNDTAVYQCNAS 61

Query: 319 SVAGSTTVRAFLQVR 333
           +V G     AF+ V 
Sbjct: 62  NVHGYLLANAFVHVV 76

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           R  C A G+P P+  W + G      P  +   + V + G LRI  +   D+G + C A 
Sbjct: 18  RWECKASGNPRPAYRWLKNGQ-----PLASENRIEV-EAGDLRITKLSLSDSGMYQCVAE 71

Query: 319 SVAGSTTVRAFLQV 332
           +  G+    A L V
Sbjct: 72  NKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 14/88 (15%)

Query: 72  PFPISEPSDATVLSGSVVEFV---CRVGGDPLPTILWRRDDGKMPTGRAKILDDR----- 123
           P    +P D      S    V   CR  G P PT  W  +  ++        D R     
Sbjct: 2   PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDE----PDSRYSLVG 57

Query: 124 -SLQIEN-VGPQDEGLYICDVENLVGSI 149
            +L I N    +D G Y C   N+VG++
Sbjct: 58  GNLVISNPSKAKDAGRYQCLASNIVGTV 85

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 78  PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDR----SLQIENVGP 132
           P   T++ G  +   C V GDP P + W ++D  +  +    +  ++    SL I+ V  
Sbjct: 8   PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSS 67

Query: 133 QDEGLYICDVENLVGSISLRASLTV 157
           +D G Y   V+N  G  ++  +++V
Sbjct: 68  EDSGKYGIVVKNKYGGETVDVTVSV 92

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 36.4 bits (84), Expect = 0.003
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 260 LSCFAEGSPLPSVFWTQ-EGSQVLMF--PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 316
           L+C AEG P P++ W   +G             G + +   G+L I+ V +ED+G+++C 
Sbjct: 3   LNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCK 62

Query: 317 ALSVAGS 323
             +  G+
Sbjct: 63  VSNDVGA 69

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 89  VEFVCRVGGDPLPTILWRRDDGKMP--TGRAKILDDR----SLQIENVGPQDEGLYICDV 142
           V   CRV G P P I W++++  +   T R  +  D      L I+    +D G Y    
Sbjct: 1   VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSA 60

Query: 143 ENLVGSISLRASLTV 157
           +N  G +S  A L V
Sbjct: 61  KNEAGIVSCTARLDV 75

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 37.2 bits (86), Expect = 0.003
 Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 78  PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDR----SLQIENVGP 132
           P   T++ G  +   C V G+P P ++W ++D  +  +    +  ++    SL I+ V  
Sbjct: 8   PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTS 67

Query: 133 QDEGLYICDVENLVGSISLRASLTV 157
           +D G Y  +V+N  G  ++  +++V
Sbjct: 68  EDSGKYSINVKNKYGGETVDVTVSV 92

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 86  GSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDDRSLQIENVGPQDEGLYICDVEN 144
           G  V   C+    P P   W +    +    R  I DD SL+I N+   DEG Y C  EN
Sbjct: 1   GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAEN 60

Query: 145 LVGSISLRASLTV 157
             G  +    L+V
Sbjct: 61  NRGKANSTGVLSV 73

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 95  VGGDPLPTILWRRDDGKM-PTGRAKI--LDDRS-LQIENVGPQDEGLYICDVENLVGSIS 150
           + G P PT+ W +D   +  +GR +I      + L I+N    D G Y   ++N  G  S
Sbjct: 8   ISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKS 67

Query: 151 LRASLTV 157
              ++ V
Sbjct: 68  ATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 36.1 bits (83), Expect = 0.004
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 93  CRVGGDPLPTILWRRDDGKMPTGRAKILD----DRSLQIENVGPQDEGLYICDVENLVG 147
           C   G PLP + W ++   +    +K L        L I NV  +D G Y C  +N  G
Sbjct: 5   CHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAG 63

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143266 cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

 Score = 36.4 bits (84), Expect = 0.004
 Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 17/90 (18%)

Query: 86  GSVVEFVCRVGGDPLPTILWRRDDGKMPTGRA-------KIL----------DDRSLQIE 128
           GS VEFVC+V  D  P I W +   K  +           +L          +   L + 
Sbjct: 1   GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLR 60

Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVH 158
           NV  +D G Y C   N +G     A LTV 
Sbjct: 61  NVTFEDAGEYTCLAGNSIGISHHSAWLTVL 90

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. Length = 90

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	633
KOG3513|consensus	1051		100.0
KOG4221|consensus	1381		100.0
KOG3513|consensus	1051		100.0
KOG4221|consensus	1381		100.0
KOG4222|consensus	1281		100.0
KOG4222|consensus	1281		100.0
KOG4194|consensus	873		99.94
PHA02785	326	IL-beta-binding protein; Provisional	99.93
KOG4194|consensus	873		99.89
PHA02785	326	IL-beta-binding protein; Provisional	99.83
PHA02826	227	IL-1 receptor-like protein; Provisional	99.77
KOG3515|consensus	741		99.73
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.68
KOG0196|consensus	996		99.68
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.64
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.59
PHA02826	227	IL-1 receptor-like protein; Provisional	99.58
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.58
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.55
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.55
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.54
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.54
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.52
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.51
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.51
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.5
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.5
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.5
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.5
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.49
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.49
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.49
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.49
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.49
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.49
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.48
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.48
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.48
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.48
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.48
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.48
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.47
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.47
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.47
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.47
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.47
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.47
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.47
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.46
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.46
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.45
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.45
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.44
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.44
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.44
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.43
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.43
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.43
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.43
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.42
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.42
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.42
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.42
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.42
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.42
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.42
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.42
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.42
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.42
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.41
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.41
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.41
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.41
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.4
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.4
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.4
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.39
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.39
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.39
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.39
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.38
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.38
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.38
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.37
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.37
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.37
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.37
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.37
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.36
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.36
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.36
KOG3515|consensus	741		99.36
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.36
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.35
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.35
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.35
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.34
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.34
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.34
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.34
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.33
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.33
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.33
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.33
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.33
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.33
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.32
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.32
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.31
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.31
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.31
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.31
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.3
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.3
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.3
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.3
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.3
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.29
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.29
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.29
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.29
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.28
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.28
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.27
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.27
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.27
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.27
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.27
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.26
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.26
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.26
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.26
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.26
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.26
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.25
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.25
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.24
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.24
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.23
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.23
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.22
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.22
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.22
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.22
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.22
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.22
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.22
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.21
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.21
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.2
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.2
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.2
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	99.19
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.19
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.19
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.19
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.19
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.19
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.18
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.18
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.18
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.17
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.17
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.16
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.15
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.15
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.15
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.14
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.14
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.14
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.13
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.12
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.11
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.11
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.11
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.1
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.09
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.09
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.09
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.07
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.07
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.06
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.06
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	99.05
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.03
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.02
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.01
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.0
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.99
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.97
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.97
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.95
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.95
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.94
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.92
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.92
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.91
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.9
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.89
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.89
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.89
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.88
smart00409	86	IG Immunoglobulin.	98.88
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.87
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.87
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.85
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.85
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.84
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.8
KOG0196|consensus	996		98.77
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.77
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.76
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.76
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.76
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.75
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.74
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.72
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.72
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.7
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.68
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.67
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.64
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.59
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.57
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.57
PHA03376	221	BARF1; Provisional	98.56
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.55
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.54
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.54
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.53
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.53
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.53
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.53
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.5
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.49
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.49
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.49
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.47
smart00409	86	IG Immunoglobulin.	98.47
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.45
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.45
KOG4802|consensus	516		98.44
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.4
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.36
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.34
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.33
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.31
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.3
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.28
KOG4258|consensus	1025		98.28
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.28
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.27
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.26
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.26
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.25
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.24
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.24
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.24
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.23
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.23
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.21
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.21
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.2
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.17
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.17
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.15
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.15
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.13
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.13
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.11
cd00063	93	FN3 Fibronectin type 3 domain; One of three types	98.11
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.1
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.09
cd00063	93	FN3 Fibronectin type 3 domain; One of three types	98.08
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.04
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.04
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.04
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.02
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.01
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.97
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.97
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.96
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	97.95
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	97.93
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	97.91
smart00060	83	FN3 Fibronectin type 3 domain. One of three types	97.89
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	97.88
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.87
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.86
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	97.85
smart00060	83	FN3 Fibronectin type 3 domain. One of three types	97.85
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	97.84
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.84
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.81
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.75
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.74
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.74
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	97.72
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	97.72
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	97.71
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	97.7
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.69
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.69
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.68
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.65
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	97.65
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.65
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	97.63
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	97.62
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	97.62
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.62
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.6
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	97.58
KOG4258|consensus	1025		97.57
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	97.56
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.53
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.49
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.48
PHA03273	486	envelope glycoprotein C; Provisional	97.47
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.45
PHA03270	466	envelope glycoprotein C; Provisional	97.38
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.37
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	97.37
smart00407	75	IGc1 Immunoglobulin C-Type.	97.37
PHA03269	566	envelope glycoprotein C; Provisional	97.36
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.35
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.35
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.29
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.28
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.27
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.24
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.22
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.21
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.21
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.19
KOG0613|consensus	1205		97.17
smart00407	75	IGc1 Immunoglobulin C-Type.	97.15
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.13
smart00406	81	IGv Immunoglobulin V-Type.	97.13
KOG4367|consensus	699		97.13
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.1
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.1
PHA03271	490	envelope glycoprotein C; Provisional	97.05
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.02
PHA02633	63	hypothetical protein; Provisional	97.01
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.0
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	96.96
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	96.96
cd05770	93	IgC_beta2m Class I major histocompatibility comple	96.95
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	96.94
KOG4152|consensus	830		96.93
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	96.9
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	96.82
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	96.82
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	96.75
cd05770	93	IgC_beta2m Class I major histocompatibility comple	96.73
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.73
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	96.7
KOG1480|consensus	909		96.67
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	96.66
smart00406	81	IGv Immunoglobulin V-Type.	96.66
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	96.63
PHA03269	566	envelope glycoprotein C; Provisional	96.62
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	96.6
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	96.59
KOG0613|consensus	1205		96.48
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	96.45
PHA03270	466	envelope glycoprotein C; Provisional	96.4
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	96.37
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	96.35
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	96.35
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.34
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	96.33
PF09294	106	Interfer-bind: Interferon-alpha/beta receptor, fib	96.32
KOG1480|consensus	909		96.32
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.31
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	96.3
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	96.29
PHA03376	221	BARF1; Provisional	96.16
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	96.08
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	95.93
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	95.93
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	95.92
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	95.89
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	95.79
KOG4597|consensus	560		95.58
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	95.58
PHA03271	490	envelope glycoprotein C; Provisional	95.57
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	95.53
KOG4802|consensus	516		95.53
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	95.52
PF10179	300	DUF2369: Uncharacterised conserved protein (DUF236	95.48
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	95.45
PHA02633	63	hypothetical protein; Provisional	95.28
PHA03042	286	CD47-like protein; Provisional	95.28
PF01108	107	Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH	95.24
PF01108	107	Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH	95.2
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	95.07
PHA02982	251	hypothetical protein; Provisional	95.06
KOG4367|consensus	699		95.03
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	94.94
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	94.86
KOG4597|consensus	560		94.54
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	94.53
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	94.42
PHA03273	486	envelope glycoprotein C; Provisional	94.31
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	94.16
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	93.95
PF09294	106	Interfer-bind: Interferon-alpha/beta receptor, fib	93.78
PHA02914	500	Immunoglobulin-like domain protein; Provisional	93.26
COG3401	343	Fibronectin type 3 domain-containing protein [Gene	91.59
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	91.51
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	91.42
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	90.69
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	90.38
PHA03042	286	CD47-like protein; Provisional	90.03
COG4733	952	Phage-related protein, tail component [Function un	89.84
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	89.53
KOG3632|consensus	1335		89.22
PF10179	300	DUF2369: Uncharacterised conserved protein (DUF236	88.57
PHA02982	251	hypothetical protein; Provisional	87.89
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	87.58
PHA02914	500	Immunoglobulin-like domain protein; Provisional	87.41
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	87.01
PF09067	104	EpoR_lig-bind: Erythropoietin receptor, ligand bin	85.51
KOG1026|consensus	774		85.19
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	85.04
KOG3632|consensus	1335		83.99
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	82.56
KOG4228|consensus	1087		80.56

>KOG3513|consensus

Probab=100.00  E-value=1.2e-66  Score=542.69  Aligned_cols=582  Identities=25%  Similarity=0.346  Sum_probs=472.7

Q ss_pred             cccccCCCCCCCCCCccccccceeeEEEEecccCCCCCceEEeeCceEEEcCCCC--CCeEEEEEEe-------------
Q psy15127          3 THLDTNHAHPMSSPRAEIEPATRTNRVSISGDPGFDSRRSRSIFGSVLGARGALS--DDQWKLIAKE-------------   67 (633)
Q Consensus         3 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~--~G~Y~C~a~~-------------   67 (633)
                      .-..++|.-|...|.+.+.|.......    ....+++|+....+|+|.|.+|..  .+.|.|.|.+             
T Consensus       152 ~~~~L~C~pP~~~P~l~~~W~~~~~~~----~~~~~~~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~  227 (1051)
T KOG3513|consen  152 DGVVLPCNPPAHFPPLRYYWMLNEFPH----FVQIDNRRVFSQENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFP  227 (1051)
T ss_pred             CceEEeCCCCCCCCCccEEehhccCCc----ccccCcceeEecccceEEEeecchhhcCceEEEEEchhhcccccCCcee
Confidence            345677888888887666633222211    223366788888899999999999  9999999998             


Q ss_pred             ---------cCcCCeeeeCCC-ceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCC-eEEcccceEEEccCCCCCCe
Q psy15127         68 ---------ALIKPFPISEPS-DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR-AKILDDRSLQIENVGPQDEG  136 (633)
Q Consensus        68 ---------v~~~p~~~~~~~-~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~-~~~~~~~~L~i~~v~~~d~G  136 (633)
                               ...+|.|...++ +..+..|+.+.|.|.+.|+|.|+|.|+|.+.....++ ........|.|.+++.+|+|
T Consensus       228 L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G  307 (1051)
T KOG3513|consen  228 LIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAG  307 (1051)
T ss_pred             EEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCe
Confidence                     234566655544 6778999999999999999999999999887443333 33334678999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCC-eeEEecc
Q psy15127        137 LYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS-KSLDLSR  215 (633)
Q Consensus       137 ~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~-~~~~~~~  215 (633)
                      .|.|.|+|..|.....+.|.|..+ |.+...+.+..+..|+++.|.|. +.|.|.|+|+|++||.++..... ....+..
T Consensus       308 ~Y~C~AeN~~G~~~~~~~v~v~a~-P~w~~~~~d~~~~~gs~v~~eC~-a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~  385 (1051)
T KOG3513|consen  308 EYECIAENSRGSATHSGHVTVYAP-PYWLQKPQDTEADTGSNVTLECK-ASGKPNPTVKWLKNGEPLEPAERDPRYKIDD  385 (1051)
T ss_pred             EEEEEEecccccceeeEEEEEecC-chhhcccceeEecCCCCeEEEEE-ecCCCCCceEEeeCCeecCccCCCcceEEeC
Confidence            999999999999999999999999 99999999999999999999999 68999999999999999985444 3455666


Q ss_pred             ceeeeEEEe----eeEEEEeecCCC------------CCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCE
Q psy15127        216 RTLGWLRVR----PLYWNVARPRAN------------LNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGS  279 (633)
Q Consensus       216 ~~~~~~~~~----g~y~C~a~~~~~------------~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~  279 (633)
                      +.+.+.++.    |.|+|.|+|..+            ..|.+....+........|..+.|.|.+.+.|.|.+.|.+++.
T Consensus       386 g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~  465 (1051)
T KOG3513|consen  386 GTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGE  465 (1051)
T ss_pred             CEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCc
Confidence            666666554    899999999887            2466666666777778889999999999999999999999998


Q ss_pred             EEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEecccCCC-------------------
Q psy15127        280 QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPK-------------------  340 (633)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~-------------------  340 (633)
                      .+.     ..+|+.+..+++|.|.+++.+|+|.|+|.|.|.+|.+...+.|.|.+...+-.                   
T Consensus       466 ~~~-----~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~  540 (1051)
T KOG3513|consen  466 KLL-----QSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEA  540 (1051)
T ss_pred             ccc-----cCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCceEEEEeec
Confidence            432     45889999999999999999999999999999999999999999997432211                   


Q ss_pred             -------ceEEeCCCcccc-------------CCCCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCce
Q psy15127        341 -------GTFTLGQPNLAT-------------GNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAV  400 (633)
Q Consensus       341 -------p~~~~~~~~~~~-------------g~p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~  400 (633)
                             ..+.|.......             |.....++|.++...|+|.|.|+|.-.....+..+.|.|.++|.+   
T Consensus       541 shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgp---  617 (1051)
T KOG3513|consen  541 SHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGP---  617 (1051)
T ss_pred             ccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCC---
Confidence                   122332222100             222245789999999999999999998888888899999987654   


Q ss_pred             ecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeee----ceEEEecC
Q psy15127        401 HRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS----TSITVSDL  476 (633)
Q Consensus       401 ~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~----~~~~i~~L  476 (633)
                                  |..+.......+++.|+|++..+   |+.+|..|.|+.+.. ....|+.+......    .+.++.+|
T Consensus       618 ------------P~~v~~~~i~~t~~~lsW~~g~d---n~SpI~~Y~iq~rt~-~~~~W~~v~~vp~~~~~~~sa~vv~L  681 (1051)
T KOG3513|consen  618 ------------PPDVHVDDISDTTARLSWSPGSD---NNSPIEKYTIQFRTP-FPGKWKAVTTVPGNITGDESATVVNL  681 (1051)
T ss_pred             ------------CCceeEeeeccceEEEEeecCCC---CCCCceEEeEEecCC-CCCcceEeeECCCcccCccceeEEcc
Confidence                        77888889999999999999995   468999999999987 45778876633322    24778999


Q ss_pred             CCCCeEEEEEEEEeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeee--------------------
Q psy15127        477 KPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELI--------------------  536 (633)
Q Consensus       477 ~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  536 (633)
                      .|...|+|||.|.|.+|.|++|.++...+|.++.|...|..+..-...+.+.+|.|..+.                    
T Consensus       682 ~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~  761 (1051)
T KOG3513|consen  682 SPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGA  761 (1051)
T ss_pred             CCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEEEeccCCHHHccCCCceEEEEEEeCCC
Confidence            999999999999999999999999999999999999999888776667777888776443                    


Q ss_pred             --------------------------------------------------------------------ecccceEEEEEE
Q psy15127        537 --------------------------------------------------------------------PTASTAVRITWE  548 (633)
Q Consensus       537 --------------------------------------------------------------------~~~~~si~v~W~  548 (633)
                                                                                          .++++.+.|+|+
T Consensus       762 ~~~W~~~~v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~~~~~s~s~~~v~W~  841 (1051)
T KOG3513|consen  762 DKEWKEVIVSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPTKLSAKPLSSSEVNLSWK  841 (1051)
T ss_pred             CcccceeEecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCccceeecccCceEEEEec
Confidence                                                                                348899999999


Q ss_pred             EecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccc
Q psy15127        549 VSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVE  628 (633)
Q Consensus       549 ~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~  628 (633)
                      +|        ...+|.++|| .|.|...+..+        ...  ..+...++.++.+|+||++.|.|.|.|+|.|++|.
T Consensus       842 ~~--------~~~nG~l~gY-~v~Y~~~~~~~--------~~~--~~~~i~~~~~~~~ltgL~~~T~Y~~~vrA~nsaG~  902 (1051)
T KOG3513|consen  842 PP--------LWDNGKLTGY-EVKYWKINEKE--------GSL--SRVQIAGNRTSWRLTGLEPNTKYRFYVRAYTSAGG  902 (1051)
T ss_pred             Cc--------CccCCcccee-EEEEEEcCCCc--------ccc--cceeecCCcceEeeeCCCCCceEEEEEEEecCCCC
Confidence            65        4556999999 99999887764        111  23335588999999999999999999999999999


Q ss_pred             cccCC
Q psy15127        629 GARLD  633 (633)
Q Consensus       629 g~~s~  633 (633)
                      ||+|.
T Consensus       903 Gp~s~  907 (1051)
T KOG3513|consen  903 GPASS  907 (1051)
T ss_pred             CCCcc
Confidence            99873

>KOG4221|consensus

Probab=100.00  E-value=3e-57  Score=468.67  Aligned_cols=530  Identities=25%  Similarity=0.385  Sum_probs=419.5

Q ss_pred             CceEEeeCceEEEcCCCC-------CCeEEEEEEe--------------cCcCCeeeeCCCceEEEcCCeEEEEEEEecc
Q psy15127         40 RRSRSIFGSVLGARGALS-------DDQWKLIAKE--------------ALIKPFPISEPSDATVLSGSVVEFVCRVGGD   98 (633)
Q Consensus        40 ~~~~~~~~~~L~i~~v~~-------~G~Y~C~a~~--------------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~   98 (633)
                      .|.+...||+|+|.++..       +|.|+|.|.-              +...+.|..++.+..+..|+++.|.|.+.+.
T Consensus        88 ~~~~~LsNgSl~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e  167 (1381)
T KOG4221|consen   88 DRRQLLSNGSLYISSVLASKHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAE  167 (1381)
T ss_pred             hHHhhccCCceeEeeecccccccccCceEEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCc
Confidence            566688899999998875       9999999977              2344677788889999999999999999998


Q ss_pred             CCCeEEEEeCCccCCC-CCeEEcccceEEEccCCCCCCeEEEEEEEeCCce-EEEEEEEEEEeec-----cccccCCCce
Q psy15127         99 PLPTILWRRDDGKMPT-GRAKILDDRSLQIENVGPQDEGLYICDVENLVGS-ISLRASLTVHLLR-----DDFRAEPKDT  171 (633)
Q Consensus        99 p~p~i~W~~~~~~i~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~s~~~~l~V~~~~-----p~~~~~~~~~  171 (633)
                      |.|.++|.++..+++. ++.....++.|.|.+++.+|.|.|+|.|.+.... .+..+.|+|...+     ..|...|...
T Consensus       168 ~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~  247 (1381)
T KOG4221|consen  168 PVPTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNA  247 (1381)
T ss_pred             cCceeEEecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCcc
Confidence            9999999999998764 4677778999999999999999999999987544 5788888888331     2356788888


Q ss_pred             EEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEE----eeeEEEEeecCCC-----------
Q psy15127        172 RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV----RPLYWNVARPRAN-----------  236 (633)
Q Consensus       172 ~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~y~C~a~~~~~-----------  236 (633)
                      .+.+|+++.|+|. +.+.|.|.|.|.|||..+..+...........+.+.++    +|.|+|.|.|...           
T Consensus       248 ~v~~g~~v~leCv-vs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~  326 (1381)
T KOG4221|consen  248 VVVEGDDVVLECV-VSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVL  326 (1381)
T ss_pred             ccccCCcEEEEEE-ecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEE
Confidence            9999999999999 79999999999999999988774444444555555544    4899999999433           


Q ss_pred             CCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEE
Q psy15127        237 LNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS  316 (633)
Q Consensus       237 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  316 (633)
                      .+|.+...  ...+...++.++.|.|.+.|.|.+.+.|+|+|..+.  +   .....+..++.|.|.-+-..|.|.|+|.
T Consensus       327 a~P~~~~~--p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~i--p---sdy~ki~~~~~lrIlgi~~sdeg~yQcv  399 (1381)
T KOG4221|consen  327 APPGFTKA--PTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRII--P---SDYFKIVGGGNLRILGIVKSDEGFYQCV  399 (1381)
T ss_pred             cCCCCCCC--CcceeeeeccceeEeCCCCCCCcceEEEEecCcccC--c---ccceEecCCCCcEEEEEecccchhhhhh
Confidence            12222222  223344558999999999999999999999998764  2   2444555666699999999999999999


Q ss_pred             EEeCCceeEEEEEEEEEecccC---------CCc-----------eEEeCCCccccCCCC--------------------
Q psy15127        317 ALSVAGSTTVRAFLQVREFCVL---------PKG-----------TFTLGQPNLATGNSD--------------------  356 (633)
Q Consensus       317 a~n~~g~~~~~~~l~v~~~~~~---------p~p-----------~~~~~~~~~~~g~p~--------------------  356 (633)
                      +.|..|.....+.+.+...+..         |.-           .++|.+.. ..+.++                    
T Consensus       400 aen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~-~~~g~i~~~~v~~~~~~~~rer~~~t  478 (1381)
T KOG4221|consen  400 AENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPA-QISGNISTYTVFYKVEGDVRERLQNT  478 (1381)
T ss_pred             hccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCcc-ccCCCcceEEEEEecCCchhhhheec
Confidence            9999999988888765432111         110           12343333 222222                    


Q ss_pred             ----CceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCC
Q psy15127        357 ----LRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGE  432 (633)
Q Consensus       357 ----~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~  432 (633)
                          ....+.++.....|.++|.|.|..|....+..|.|...|..               |..+.....+...+.+.|++
T Consensus       479 ss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEg---------------p~~~~a~ats~~ti~v~Wep  543 (1381)
T KOG4221|consen  479 SSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEG---------------PVQLQAYATSPTTILVTWEP  543 (1381)
T ss_pred             cCCceEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCCC---------------CccccccccCcceEEEEecC
Confidence                22267788888888999999999999999999999876553               33377778889999999999


Q ss_pred             CCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCceeecCCCCC
Q psy15127        433 PEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSL  512 (633)
Q Consensus       433 ~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~~p~  512 (633)
                      |...   +++|++|.+.|...+. +.|..  .+.+.+.++|.+|++++.|.|+|.|.|++|.|..|... .+.|+.+.|+
T Consensus       544 P~~~---n~~I~~yk~~ys~~~~-~~~~~--~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i-~V~Tlsd~Ps  616 (1381)
T KOG4221|consen  544 PPFG---NGPITGYKLFYSEDDT-GKELR--VENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADI-TVRTLSDVPS  616 (1381)
T ss_pred             CCCC---CCCceEEEEEEEcCCC-CceEE--EecCccEEEeecCCCccceEEEEEEecCCCCCCCCCce-EEEeccCCCC
Confidence            9854   6899999999987743 44442  45567899999999999999999999999999988777 6899999999


Q ss_pred             CCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccc
Q psy15127        513 VPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYN  592 (633)
Q Consensus       513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~  592 (633)
                      +||+.+               ++...++++|.|+|.      ||.+...+|.+++| .|+|+......+         ++
T Consensus       617 aPP~Nl---------------~lev~sStsVrVsW~------pP~~~t~ng~itgY-kIRy~~~~~~~~---------~~  665 (1381)
T KOG4221|consen  617 APPQNL---------------SLEVVSSTSVRVSWL------PPPSETQNGQITGY-KIRYRKLSREDE---------VN  665 (1381)
T ss_pred             CCCcce---------------EEEecCCCeEEEEcc------CCCcccccceEEEE-EEEecccCcccc---------cc
Confidence            999854               899999999999999      45557789999999 999998766541         11


Q ss_pred             eeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        593 MATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       593 ~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                        ...+.++.+.|++.+|+|++.|+|+|.|.|..|.|++|+
T Consensus       666 --~t~v~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~  704 (1381)
T KOG4221|consen  666 --ETVVKGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASE  704 (1381)
T ss_pred             --eeecccchhhhHhhcCCCCceEEEEEEEeccCCCCCccc
Confidence              222345788999999999999999999999999999996

>KOG3513|consensus

Probab=100.00  E-value=2.9e-50  Score=420.46  Aligned_cols=546  Identities=22%  Similarity=0.280  Sum_probs=398.0

Q ss_pred             EeeCceEEEcCCCC--CCeEEEEEEe------------cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC
Q psy15127         44 SIFGSVLGARGALS--DDQWKLIAKE------------ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD  109 (633)
Q Consensus        44 ~~~~~~L~i~~v~~--~G~Y~C~a~~------------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~  109 (633)
                      ...+++|.|.+++.  +|.|+|.|.|            +..+|.++..+.+..+..|++++|.|.+.|.|.|.|+|++||
T Consensus       290 ~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg  369 (1051)
T KOG3513|consen  290 SNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNG  369 (1051)
T ss_pred             eccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCC
Confidence            46678999999998  9999999999            678899999999999999999999999999999999999999


Q ss_pred             ccCCCCCe---EEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEeeccccccCCCce--EEecCCcEEEEEe
Q psy15127        110 GKMPTGRA---KILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDT--RVASGETALLECG  184 (633)
Q Consensus       110 ~~i~~~~~---~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~--~~~~g~~~~l~C~  184 (633)
                      .++.....   ....++.|+|.+|+.+|+|.|+|.|+|.+|...+.+.|.|....|.+...|...  .+..|.++.|.|.
T Consensus       370 ~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~  449 (1051)
T KOG3513|consen  370 EPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCK  449 (1051)
T ss_pred             eecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeec
Confidence            99975443   666788999999999999999999999999999999999999888888888766  6678999999999


Q ss_pred             CCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEEe----eeEEEEeecCCCCCCcc---c------ccccceeEE
Q psy15127        185 PPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVR----PLYWNVARPRANLNPRY---I------GRKMASLLI  251 (633)
Q Consensus       185 ~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~y~C~a~~~~~~~p~~---~------~~~~~~~~~  251 (633)
                       ..+.|.+.+.|.++++ ............+++|.+.+++    |.|+|.|.|..+.....   .      +........
T Consensus       450 -~~asP~p~~~W~k~~~-~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~  527 (1051)
T KOG3513|consen  450 -PFASPKPKVSWLKGGE-KLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTD  527 (1051)
T ss_pred             -cCCCCcceEEEEcCCc-ccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhh
Confidence             7999999999999998 5555666666678888877654    89999999998843211   1      111344455


Q ss_pred             ecCCceEEEEEEEeeecC--CeeEEEECCEEEEeccCCcc-ceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127        252 WNHPRVNRLSCFAEGSPL--PSVFWTQEGSQVLMFPGNAY-GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  328 (633)
Q Consensus       252 ~~~g~~~~l~C~~~g~p~--~~v~W~~~g~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  328 (633)
                      +..|+.+.|.|.+..++.  ..|.|.+||..+........ .+......+.|+|.+++..|+|.|+|+|.....+.+..+
T Consensus       528 v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A  607 (1051)
T KOG3513|consen  528 VKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARA  607 (1051)
T ss_pred             hccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhccc
Confidence            667899999999988777  47899999998765443221 122122235699999999999999999999888999999


Q ss_pred             EEEEEecccCCCc-----------eEEeCCCcccc-----------------------------CCCCCceEEecccccC
Q psy15127        329 FLQVREFCVLPKG-----------TFTLGQPNLAT-----------------------------GNSDLRRIACDLRETD  368 (633)
Q Consensus       329 ~l~v~~~~~~p~p-----------~~~~~~~~~~~-----------------------------g~p~~~~~i~~~~~~d  368 (633)
                      .+.|+..+..|+-           .+.|.+...-.                             |+  .+-.+.+|.+..
T Consensus       608 ~l~V~gpPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~~W~~v~~vp~~~~~~--~sa~vv~L~Pwv  685 (1051)
T KOG3513|consen  608 DLLVRGPPGPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFRTPFPGKWKAVTTVPGNITGD--ESATVVNLSPWV  685 (1051)
T ss_pred             ceEEecCCCCCCceeEeeeccceEEEEeecCCCCCCCceEEeEEecCCCCCcceEeeECCCcccCc--cceeEEccCCCc
Confidence            9999988777652           23333222100                             11  000122223333


Q ss_pred             CEEEEEEEEcCCcce-----------------------------------------------------------------
Q psy15127        369 SGLYTCTASSESGET-----------------------------------------------------------------  383 (633)
Q Consensus       369 ~g~y~c~a~n~~g~~-----------------------------------------------------------------  383 (633)
                      .|.|++.|.|..|..                                                                 
T Consensus       686 ~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~~~W  765 (1051)
T KOG3513|consen  686 EYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGADKEW  765 (1051)
T ss_pred             ceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEEEeccCCHHHccCCCceEEEEEEeCCCCccc
Confidence            333333333333221                                                                 


Q ss_pred             ------------------------eEEEEEEee----cCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCC
Q psy15127        384 ------------------------SWSASLSVE----PRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEP  435 (633)
Q Consensus       384 ------------------------~~~~~l~v~----~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~  435 (633)
                                              -..+.+.+.    .+|.+..+........++.+|..+.....+++.+.|+|+++..
T Consensus       766 ~~~~v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~~~~~s~s~~~v~W~~~~~  845 (1051)
T KOG3513|consen  766 KEVIVSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPTKLSAKPLSSSEVNLSWKPPLW  845 (1051)
T ss_pred             ceeEecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCccceeecccCceEEEEecCcCc
Confidence                                    111111111    1233333333444555678899999999999999999999975


Q ss_pred             CCCCCcceeEEEEEEEEecCCC-CeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCceeecCCCCCC-
Q psy15127        436 RGGGVAPVIGYTVEYFSSDLQT-GWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLV-  513 (633)
Q Consensus       436 ~~~~~~~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~~p~~-  513 (633)
                      .   ++.+++|+|+|+..+... .-.......+.+..+|+||++++.|.|.|+|.|++|.|+.|... ...|...+|+. 
T Consensus       846 ~---nG~l~gY~v~Y~~~~~~~~~~~~~~i~~~~~~~~ltgL~~~T~Y~~~vrA~nsaG~Gp~s~~~-~~tt~k~pPs~~  921 (1051)
T KOG3513|consen  846 D---NGKLTGYEVKYWKINEKEGSLSRVQIAGNRTSWRLTGLEPNTKYRFYVRAYTSAGGGPASSEE-NVTTKKAPPSQV  921 (1051)
T ss_pred             c---CCccceeEEEEEEcCCCcccccceeecCCcceEeeeCCCCCceEEEEEEEecCCCCCCCccce-eccccCCCCccc
Confidence            4   589999999999876542 22222334567889999999999999999999999999988765 35677777775 


Q ss_pred             ---CcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeec
Q psy15127        514 ---PQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEK  590 (633)
Q Consensus       514 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~  590 (633)
                         |+-.                .+...+...+.|.|+.      .........+.|| .|.|++......      |  
T Consensus       922 ~~~p~g~----------------~~~~~~~~~~~l~w~~------v~~~~nes~v~gY-kV~~~~~~~~~~------~--  970 (1051)
T KOG3513|consen  922 DIAPPGN----------------FIWKFSASILLLLWLL------VSAFENESEVGGY-KVLYREDLQNDI------E--  970 (1051)
T ss_pred             ccCCCcc----------------eEEeeeeeEEEEEEee------EEEEeecccCcce-EEEEeecccCCc------e--
Confidence               4433                4667788999999993      2233345569999 888888777651      1  


Q ss_pred             cceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        591 YNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       591 ~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      ..  ..... ....-...++  .-.|.+.|++....|.|..|+
T Consensus       971 ~~--~t~~~-~~~~~~p~~~--~~~y~i~v~~~~~ggdg~~s~ 1008 (1051)
T KOG3513|consen  971 II--LTMKL-DAEFPEPSDL--DGKYDIKVRGYSPGGDGTISE 1008 (1051)
T ss_pred             eE--ecccc-cccccCcccc--CCcceeEeccccCCCCCCcCC
Confidence            10  10000 0111122334  268999999999999997653

>KOG4221|consensus

Probab=100.00  E-value=2.7e-50  Score=417.19  Aligned_cols=549  Identities=19%  Similarity=0.214  Sum_probs=394.5

Q ss_pred             EEEecccCCCCCceEEeeCceEEEcCCCC--CCeEEEEEEe-------------c------CcCCeeeeCCCceEEEcCC
Q psy15127         29 VSISGDPGFDSRRSRSIFGSVLGARGALS--DDQWKLIAKE-------------A------LIKPFPISEPSDATVLSGS   87 (633)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~--~G~Y~C~a~~-------------v------~~~p~~~~~~~~~~~~~G~   87 (633)
                      |+-+..|.....|+.+..+|.|.|.++++  .|.|+|.+++             +      ...-.|...|....+.+|+
T Consensus       174 w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~  253 (1381)
T KOG4221|consen  174 WLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGD  253 (1381)
T ss_pred             EecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCC
Confidence            44444455555688889999999999999  9999999999             2      2233577889999999999


Q ss_pred             eEEEEEEEeccCCCeEEEEeCCccCCCC--CeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEeeccccc
Q psy15127         88 VVEFVCRVGGDPLPTILWRRDDGKMPTG--RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFR  165 (633)
Q Consensus        88 ~~~L~C~~~~~p~p~i~W~~~~~~i~~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~  165 (633)
                      .+.|.|.+.+.|.|+|.|.||+..|.-+  +......+.|.|.+++..|+|.|+|+|.|......+.++|+|..+ |.+.
T Consensus       254 ~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~-P~~~  332 (1381)
T KOG4221|consen  254 DVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAP-PGFT  332 (1381)
T ss_pred             cEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcC-CCCC
Confidence            9999999999999999999999988655  444455778999999999999999999997777888899999999 9999


Q ss_pred             cCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEE----eeeEEEEeecCCCCCCcc
Q psy15127        166 AEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV----RPLYWNVARPRANLNPRY  241 (633)
Q Consensus       166 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~y~C~a~~~~~~~p~~  241 (633)
                      ..|......++.++.|.|. ..|.|.+.+.|+|||..+...+...+..... +.++.+    .+.|+|.+.|.++.....
T Consensus       333 ~~p~~l~A~e~~die~ec~-~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~-lrIlgi~~sdeg~yQcvaen~~G~a~a~  410 (1381)
T KOG4221|consen  333 KAPTTLVAHESMDIEFECP-VSGKPIPTVRWYKNGDRIIPSDYFKIVGGGN-LRILGIVKSDEGFYQCVAENDAGSAQAA  410 (1381)
T ss_pred             CCCcceeeeeccceeEeCC-CCCCCcceEEEEecCcccCcccceEecCCCC-cEEEEEecccchhhhhhhccCcccccch
Confidence            9999999999999999999 6888999999999999888755544443332 444433    478999999988743111


Q ss_pred             c---------------ccccceeEEecCCceEEEEEEEe-----eecCCeeEEEECCEEEEeccCCccceEEEccCceEE
Q psy15127        242 I---------------GRKMASLLIWNHPRVNRLSCFAE-----GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLR  301 (633)
Q Consensus       242 ~---------------~~~~~~~~~~~~g~~~~l~C~~~-----g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~  301 (633)
                      .               .......++...-...-+.|...     +.+-+.++|++......     ....+.....+ +.
T Consensus       411 a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~-----rer~~~tss~g-~~  484 (1381)
T KOG4221|consen  411 AQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDV-----RERLQNTSSPG-IQ  484 (1381)
T ss_pred             hhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCch-----hhhheeccCCc-eE
Confidence            0               00011112222223334444433     33345677765322111     11111222223 44


Q ss_pred             EcCCCCCCCeEEEEE--EEeCCceeEEEEEEEEEecccCCCc-----------eEEeCCCcccc------------C---
Q psy15127        302 IQGVQKEDAGFFVCS--ALSVAGSTTVRAFLQVREFCVLPKG-----------TFTLGQPNLAT------------G---  353 (633)
Q Consensus       302 i~~~~~~d~G~Y~C~--a~n~~g~~~~~~~l~v~~~~~~p~p-----------~~~~~~~~~~~------------g---  353 (633)
                      +...+....+.|.|+  |.|..|....++.|.|...+..|..           .+.|.+....+            +   
T Consensus       485 ~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~~~  564 (1381)
T KOG4221|consen  485 VTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEGPVQLQAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDDTG  564 (1381)
T ss_pred             EEeeecccceeEEEEEeccCcccCCccCCceEEecCCCCCccccccccCcceEEEEecCCCCCCCCceEEEEEEEcCCCC
Confidence            444445556666655  5788899999999999865532221           23444443211            1   


Q ss_pred             ------CCCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCC-CCCCcEEEEeeCCeE
Q psy15127        354 ------NSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPG-PPAAPVILNTTRGSV  426 (633)
Q Consensus       354 ------~p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~-~p~~~~~~~~~~~~i  426 (633)
                            +...+++|.++...+.|.|+|+|.|..|....+..+.|......            |+ ||.++++...+++++
T Consensus       565 ~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~------------PsaPP~Nl~lev~sStsV  632 (1381)
T KOG4221|consen  565 KELRVENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDV------------PSAPPQNLSLEVVSSTSV  632 (1381)
T ss_pred             ceEEEecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCC------------CCCCCcceEEEecCCCeE
Confidence                  12244589999999999999999999998877777776643222            33 455589999999999


Q ss_pred             EEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCceee
Q psy15127        427 TLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT  506 (633)
Q Consensus       427 ~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t  506 (633)
                      .|+|.+|..... ++.+.+|.++|+......+.+......+..++++.+|+|++.|.|+|.|.|..|.|++|.+.. +.|
T Consensus       633 rVsW~pP~~~t~-ng~itgYkIRy~~~~~~~~~~~t~v~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~-aeT  710 (1381)
T KOG4221|consen  633 RVSWLPPPSETQ-NGQITGYKIRYRKLSREDEVNETVVKGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVS-AET  710 (1381)
T ss_pred             EEEccCCCcccc-cceEEEEEEEecccCcccccceeecccchhhhHhhcCCCCceEEEEEEEeccCCCCCccccee-ccC
Confidence            999999988765 478999999999664333332223344678899999999999999999999999999999984 666


Q ss_pred             cCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceee
Q psy15127        507 LGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRI  586 (633)
Q Consensus       507 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~  586 (633)
                      .+..+..+-..          +...  -......++|.+.|.||        .+.+-.+.|| .|.|+.-.+..      
T Consensus       711 ~~~d~~e~vp~----------~ps~--l~~~~g~~si~vsW~Pp--------~~~~~~vrgY-~ig~r~g~~~p------  763 (1381)
T KOG4221|consen  711 PESDLDERVPG----------KPSE--LHVHPGSNSIVVSWTPP--------PHPNIVVRGY-KIGYRPGSGIP------  763 (1381)
T ss_pred             ccccccccCCC----------CCce--eeeccCceeEEEEeCCC--------CChhhhhcce-EEeeecccCCC------
Confidence            55433321100          0000  01223468999999976        5677899999 99997322211      


Q ss_pred             eeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccC
Q psy15127        587 TWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       587 ~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s  632 (633)
                           ...++.++....+|.|..|.++.-|.|+++|+|+.|+|.|+
T Consensus       764 -----~~~tIrl~~~~s~y~l~~Le~~~~YvVkL~AfNn~gdG~p~  804 (1381)
T KOG4221|consen  764 -----DTGTIRLDEKVSYYNLEQLEPNRDYVVKLRAFNNHGDGNPI  804 (1381)
T ss_pred             -----CCccEEecceeeEEEEEecccCceEEEEEEEeccCCCCcce
Confidence                 23466777889999999999999999999999999999874

>KOG4222|consensus

Probab=100.00  E-value=6.1e-50  Score=412.30  Aligned_cols=588  Identities=30%  Similarity=0.477  Sum_probs=463.3

Q ss_pred             CCCCCCccccccceeeEEEEecccCCCCCceEEeeCceEEEcCC-CC------CCeEEEEEEe--------------cCc
Q psy15127         12 PMSSPRAEIEPATRTNRVSISGDPGFDSRRSRSIFGSVLGARGA-LS------DDQWKLIAKE--------------ALI   70 (633)
Q Consensus        12 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~------~G~Y~C~a~~--------------v~~   70 (633)
                      -.+.|++.|+|+...... ..+  .+.+.|+.+ .+|.|.+..+ ..      .|.|+|.|.|              ...
T Consensus        55 asG~ppPti~w~k~G~~~-~~~--e~~shR~~l-p~gsLf~l~~ahg~~a~~d~G~y~cvasn~~g~avSr~a~L~vavl  130 (1281)
T KOG4222|consen   55 ASGDPPPTIEWYKDGENV-FKG--EPGSHRFLL-PDGSLFLLRLAHGKKAGHDHGVYSCVASNRLGEAVSRGASLIVAVL  130 (1281)
T ss_pred             CCCCCCCceecccCCccc-CCC--CCCCcceec-CCccEEEEecccCCcccCCCceeEeeecCccceeeecCceEEEEEe
Confidence            345578999977655422 122  134456644 4455544432 22      7999999999              112


Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEE-eccCCCeEEEEeCCccCC--C-CCeEEcccceEEEccCCCCCCeEEEEEEEeCC
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMP--T-GRAKILDDRSLQIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~-~~~p~p~i~W~~~~~~i~--~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      +--|...|..+.+..|+.+.|.|.- .|+|.|.+.|.|+|.++.  . .++....++.|.|.+++++|+|.|.|++.|-.
T Consensus       131 rddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmv  210 (1281)
T KOG4222|consen  131 RDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMV  210 (1281)
T ss_pred             chhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeecccc
Confidence            2345677888889999999999986 588999999999999886  2 34556678899999999999999999999999


Q ss_pred             ce-EEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEE--
Q psy15127        147 GS-ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV--  223 (633)
Q Consensus       147 g~-~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--  223 (633)
                      |. .+..++|.|.+. |.+...+.+..+..|..+.+.|. ..|.|.+++.|.+++..+..... .+.....++.+..+  
T Consensus       211 G~ReS~~A~lsv~e~-P~f~~rp~~~~v~~g~~~~f~c~-v~GdP~P~Vrwkk~~~~~P~~ry-~i~~d~qtl~i~r~tp  287 (1281)
T KOG4222|consen  211 GERESIPARLSVQEK-PWFWKRPKDLAVLVGAAAEFDCR-VGGDPQPTVRWKKDDPSLPRSRY-SILDDTQTLRIDRVTP  287 (1281)
T ss_pred             cccccccceeeeccC-Cccccccccceeecccccccccc-cCCCCCCceeeeccCCCCCccce-eeeeccccccccccCC
Confidence            88 578889999999 99999999999999999999999 79999999999997766553221 12222233333333  


Q ss_pred             --eeeEEEEeecCCCC-----------CCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEec---cCC
Q psy15127        224 --RPLYWNVARPRANL-----------NPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMF---PGN  287 (633)
Q Consensus       224 --~g~y~C~a~~~~~~-----------~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~---~~~  287 (633)
                        .|.|.|.+.|.++.           +|.+......  -.+..|..++|.|.+.|+|+|.+.|.+.|....++   +..
T Consensus       288 ~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~d--q~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~  365 (1281)
T KOG4222|consen  288 TDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRD--QKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPS  365 (1281)
T ss_pred             CcccceeeeccccccccccccceEEecCcccccccCc--cccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCC
Confidence              47999999998763           2222222222  22345689999999999999999999998866555   344


Q ss_pred             ccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEec-cc-CCCceEEeCCCccc-------------c
Q psy15127        288 AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREF-CV-LPKGTFTLGQPNLA-------------T  352 (633)
Q Consensus       288 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~-~~-~p~p~~~~~~~~~~-------------~  352 (633)
                      ...+.++...++|.|.++...|.|.|.|...+..|.......+.+.+. .. .|+|++..++.+.+             .
T Consensus       366 ~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~at  445 (1281)
T KOG4222|consen  366 SNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSAT  445 (1281)
T ss_pred             cCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhh
Confidence            556778888889999999999999999999888888766666555543 23 67788777766642             2


Q ss_pred             CCCCCc------------------------eEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCC
Q psy15127        353 GNSDLR------------------------RIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGL  408 (633)
Q Consensus       353 g~p~~~------------------------~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~  408 (633)
                      |.|...                        +.+.++...|.|.|+|.|.+..|+...++.|.|.+.-......+..+++.
T Consensus       446 g~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~  525 (1281)
T KOG4222|consen  446 GAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSA  525 (1281)
T ss_pred             CCCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhh
Confidence            444322                        27788899999999999999999999999999998766666788889999


Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRA  488 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a  488 (633)
                      +|++|..+....+..+++.|+|.+....+  ..++.+|.+++...+..+.|+.....+..+.+.|.+|+|+..|.|.|+|
T Consensus       526 ~pS~p~~p~v~~v~~~~v~LsW~~~s~sg--~vP~s~yiieafs~~~~etw~~ta~~v~~t~~~I~gL~P~~sylf~vRa  603 (1281)
T KOG4222|consen  526 LPSPPGTPGVVNVSRTSVTLSWQPTSPSG--AVPASGYIIEAFSPDLGETWQTTAGRVKTTTYAIRGLKPNLSYLFLVRA  603 (1281)
T ss_pred             CCCCCCCCccccCCCceEEecccCCCCCC--ccccchhHHHHhhhhhcccccccccccccceeeecCcCccceeeeeeec
Confidence            99999999999999999999999998754  6799999999999888889998888888999999999999999999999


Q ss_pred             EeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcce
Q psy15127        489 ENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGT  568 (633)
Q Consensus       489 ~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y  568 (633)
                      .|..|.+.++..+...+|....+......-...-.+..+..+.+.+...+++++|.+.|..+       ...+...|++|
T Consensus       604 ~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~-------kq~~~~~i~g~  676 (1281)
T KOG4222|consen  604 ENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLNASSLRLGWTKD-------KQHGSQYIQGY  676 (1281)
T ss_pred             cccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccchhheeeeeeee-------cccCcccccce
Confidence            99999999988777788877777776666666777777788888899999999999999965       34557899999


Q ss_pred             eEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEecccccc
Q psy15127        569 KVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTV  627 (633)
Q Consensus       569 ~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g  627 (633)
                       +|.|+......     .+|.....    ......++.+.+|+|++.|+|.++.+...|
T Consensus       677 -~I~~r~~~~~~-----a~~s~~~v----~~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~  725 (1281)
T KOG4222|consen  677 -RISYRSLGSQL-----AQWSNAGV----TVPTPESVVVPNLKPGTNYEFFVRPFFPHG  725 (1281)
T ss_pred             -EEEeccCcccc-----ccccccce----eccCCcceeccccCCCccceeeccCccCCC
Confidence             99999987732     34543322    234578899999999999999999988844

>KOG4222|consensus

Probab=100.00  E-value=6.9e-44  Score=367.78  Aligned_cols=579  Identities=26%  Similarity=0.370  Sum_probs=413.6

Q ss_pred             CCCCCCCCccccccceeeEEEEecccCCCCCceEEeeCceEEEcCCCC--CCeEEEEEEe-------------cCcCCee
Q psy15127         10 AHPMSSPRAEIEPATRTNRVSISGDPGFDSRRSRSIFGSVLGARGALS--DDQWKLIAKE-------------ALIKPFP   74 (633)
Q Consensus        10 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~--~G~Y~C~a~~-------------v~~~p~~   74 (633)
                      -=+..+|++.|.|+++...-.     ..+..++.+.++|.|.|.+++.  +|.|.|++.|             ++.+|.|
T Consensus       154 gpP~ghpeptvSw~Kdg~pl~-----~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f  228 (1281)
T KOG4222|consen  154 GPPRGHPEPTVSWVKDGKPLD-----HYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWF  228 (1281)
T ss_pred             cCCCCCCCCcceeecCCCccc-----cccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCcc
Confidence            345677899999555444222     2355677788899999999999  9999999999             7889999


Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEccc-ceEEEccCCCCCCeEEEEEEEeCCceEEEEE
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDD-RSLQIENVGPQDEGLYICDVENLVGSISLRA  153 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~-~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~  153 (633)
                      ...|....+.+|..+.+.|.+.|.|.|.+.|.|++..++..+..+..+ .+|.|.+++..|.|.|.|.+.|..|..++..
T Consensus       229 ~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa  308 (1281)
T KOG4222|consen  229 WKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASA  308 (1281)
T ss_pred             ccccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccCCCcccceeeecccccccccccc
Confidence            999999999999999999999999999999999999999988888877 8999999999999999999999999999999


Q ss_pred             EEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCC-------CeeEEeccceeeeEEEe--
Q psy15127        154 SLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES-------SKSLDLSRRTLGWLRVR--  224 (633)
Q Consensus       154 ~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--  224 (633)
                      .++|.++ |.+...+.+..+..|..++|.|. ..|+|.+.+.|.+.|...-...       ..........+.+.++.  
T Consensus       309 ~ltV~ap-P~f~kkp~dq~v~lg~~vt~pc~-~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~  386 (1281)
T KOG4222|consen  309 TLTVQAP-PSFGKKPRDQKVALGGTVTFPCE-TLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQS  386 (1281)
T ss_pred             ceEEecC-cccccccCccccccCceEEeeee-cCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCccccccccc
Confidence            9999999 99999999999999999999999 7999999999999876543221       11112222345554443  


Q ss_pred             --eeEEEEeecCCCCC----------------CcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccC
Q psy15127        225 --PLYWNVARPRANLN----------------PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPG  286 (633)
Q Consensus       225 --g~y~C~a~~~~~~~----------------p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~  286 (633)
                        |.|.|...+.++..                |.-.+......-....+..+.|.|.+.|.|.+.+.|.++|..+...  
T Consensus       387 d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~--  464 (1281)
T KOG4222|consen  387 DEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNP--  464 (1281)
T ss_pred             ccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCCCCchhhhcccccccC--
Confidence              68999866654421                1111111111222334688999999999999999999999876532  


Q ss_pred             CccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEecccC------------CCc-------------
Q psy15127        287 NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVL------------PKG-------------  341 (633)
Q Consensus       287 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~------------p~p-------------  341 (633)
                        ..+......++|+|.+...-|.|.|+|.+.+..|....++.|.|.+....            |.+             
T Consensus       465 --d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~  542 (1281)
T KOG4222|consen  465 --DSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTS  542 (1281)
T ss_pred             --CcccceeeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCce
Confidence              24555556789999999999999999999999999999999998854222            110             


Q ss_pred             -eEEeCCCccccCCCC-------------------------CceEEecccccCCEEEEEEEEcCCcceeEEEE-EEeecC
Q psy15127        342 -TFTLGQPNLATGNSD-------------------------LRRIACDLRETDSGLYTCTASSESGETSWSAS-LSVEPR  394 (633)
Q Consensus       342 -~~~~~~~~~~~g~p~-------------------------~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~-l~v~~~  394 (633)
                       .+.|.+.....+-|.                         ..+.|..+....++.|.|+|.|..|-..-+.. =.|...
T Consensus       543 v~LsW~~~s~sg~vP~s~yiieafs~~~~etw~~ta~~v~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta  622 (1281)
T KOG4222|consen  543 VTLSWQPTSPSGAVPASGYIIEAFSPDLGETWQTTAGRVKTTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVRTA  622 (1281)
T ss_pred             EEecccCCCCCCccccchhHHHHhhhhhcccccccccccccceeeecCcCccceeeeeeeccccccccCCcccCCccccC
Confidence             112222221111121                         23389999999999999999999994311100 001111


Q ss_pred             CCCCceecCCCCCC-CCCCCCCcE---EEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecC-CCCeEEEEEee-ee
Q psy15127        395 PGPHAVHRMPDSGL-FPGPPAAPV---ILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDL-QTGWVVAAHRI-TS  468 (633)
Q Consensus       395 p~~~~~~~~~~~~~-~p~~p~~~~---~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~-~~  468 (633)
                      +............+ ....-..++   ....+++++.+.|..+...+  ...|.+|.|.|+..+. ...|....... ..
T Consensus       623 ~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~kq~~--~~~i~g~~I~~r~~~~~~a~~s~~~v~~~t~  700 (1281)
T KOG4222|consen  623 PADAAAAGADHQKVQRELSNELLRLSNPNVLNASSLRLGWTKDKQHG--SQYIQGYRISYRSLGSQLAQWSNAGVTVPTP  700 (1281)
T ss_pred             CCChhhhhhhHHHHHHhhcccceeeccccccchhheeeeeeeecccC--cccccceEEEeccCccccccccccceeccCC
Confidence            11000000000000 000000111   12346789999999988754  5679999999998765 33455443333 34


Q ss_pred             ceEEEecCCCCCeEEEEEEEEeccc---cCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEE
Q psy15127        469 TSITVSDLKPDTSYMFIVRAENSHG---LGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRI  545 (633)
Q Consensus       469 ~~~~i~~L~p~~~Y~~~v~a~n~~G---~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v  545 (633)
                      ..+.+.+|.|++.|+|.+..+...|   .|.++... .+.|.+.+|+.|+..+.         .+   +.-..+.+++.|
T Consensus       701 ~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk-~alt~e~~PSapp~~~~---------~~---s~~~~n~Ta~~V  767 (1281)
T KOG4222|consen  701 ESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSK-TALTLEEPPSAPPQGVQ---------HV---SKGSYNGTAGSV  767 (1281)
T ss_pred             cceeccccCCCccceeeccCccCCCcceecCCcccc-cccccccCCCCCCCCcc---------cc---ccccCCCceeeE
Confidence            6788999999999999999998844   56666665 47788888888887521         01   334457889999


Q ss_pred             EEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEecccc
Q psy15127        546 TWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFK  625 (633)
Q Consensus       546 ~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~  625 (633)
                      +|.+      +.....++.+++| .|..-.-..          .+++... ..+....+.+|.+|.+++.|+|+|.|+|.
T Consensus       768 sw~~------pp~d~~ng~~qg~-ki~~~~~e~----------tr~h~n~-t~~a~~~sv~i~~l~~g~ay~vtv~a~T~  829 (1281)
T KOG4222|consen  768 SWAP------PPADVQNGILQGY-KIECSGGEK----------TRIHINK-TTNARTGSVTIGNLVTGIAYSVTVAARTG  829 (1281)
T ss_pred             EecC------CcccccCCcccce-eEEeecCcc----------ccccccc-cccCCCCceEeccccccceEEEEEeeecC
Confidence            9994      3446789999999 444321110          1111111 13366789999999999999999999999


Q ss_pred             ccccccC
Q psy15127        626 TVEGARL  632 (633)
Q Consensus       626 ~g~g~~s  632 (633)
                      +|+|+-|
T Consensus       830 aGvG~~s  836 (1281)
T KOG4222|consen  830 AGVGVKS  836 (1281)
T ss_pred             CccCCCC
Confidence            9999854

>KOG4194|consensus

Probab=99.94  E-value=2.4e-25  Score=216.63  Aligned_cols=257  Identities=27%  Similarity=0.456  Sum_probs=197.8

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEec--cCCCeEEEEeCCccCCC------------CCeEEc-----ccceEEEcc
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGG--DPLPTILWRRDDGKMPT------------GRAKIL-----DDRSLQIEN  129 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~--~p~p~i~W~~~~~~i~~------------~~~~~~-----~~~~L~i~~  129 (633)
                      ..+|.|..+|..+.+..|+.++|+|.+.+  ..+..+.|+++++..+.            .+.-..     -.+.|.+.|
T Consensus       501 spkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~n  580 (873)
T KOG4194|consen  501 SPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDN  580 (873)
T ss_pred             CCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeee
Confidence            46789999999999999999999999975  33447999998874421            000000     124799999


Q ss_pred             CCCCCCeEEEEEEEeCCce-EEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEE-eccCC
Q psy15127        130 VGPQDEGLYICDVENLVGS-ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQF-IDLES  207 (633)
Q Consensus       130 v~~~d~G~Y~C~~~n~~g~-~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~-~~~~~  207 (633)
                      |+..|+|.|+|++.|.+|+ .+..++|+|... |.|...|.+..+..|+.+.|.|. +.|.|.|+|.|.++|.. .+...
T Consensus       581 Vt~td~grYQCVvtN~FGStysqk~KltV~~~-PsFtktP~dltl~tg~mArl~Ca-AtG~P~PeIawqkdggtdFPAA~  658 (873)
T KOG4194|consen  581 VTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQA-PSFTKTPEDLTLRTGQMARLECA-ATGHPRPEIAWQKDGGTDFPAAR  658 (873)
T ss_pred             eecccCceEEEEEecccCcchhheeEEEeecc-CccccCcccceeecccceeeeee-ccCCCCcceeehhcCCCCCchhh
Confidence            9999999999999999998 689999999998 99999999999999999999999 79999999999998876 44433


Q ss_pred             CeeEEec--cceeeeEEE----eeeEEEEeecCCCC-----------CCcccccccceeEEecCCceEEEEEEEeeecC-
Q psy15127        208 SKSLDLS--RRTLGWLRV----RPLYWNVARPRANL-----------NPRYIGRKMASLLIWNHPRVNRLSCFAEGSPL-  269 (633)
Q Consensus       208 ~~~~~~~--~~~~~~~~~----~g~y~C~a~~~~~~-----------~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~-  269 (633)
                      .+.+.+.  ...+.+.++    .|.|+|.|.|.+|.           .|.+..+....  .+..|+++.|.|.+.|.|. 
T Consensus       659 eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~--~V~~get~vlqC~a~~~~a~  736 (873)
T KOG4194|consen  659 ERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQ--LVVVGETLVLQCLAEGAPAD  736 (873)
T ss_pred             hheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccce--EEEecceEEEEEecCCCCCC
Confidence            3333322  233333333    48999999999883           24444443333  3445799999999999998 


Q ss_pred             CeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127        270 PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR  333 (633)
Q Consensus       270 ~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  333 (633)
                      |.+.|+|+++++...+..    .....+.-|.+.+...+|+|.|+|+.+|..|.......+.+.
T Consensus       737 pr~~W~k~d~pil~t~rh----~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~  796 (873)
T KOG4194|consen  737 PRLEWFKEDKPILITERH----TFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVY  796 (873)
T ss_pred             ccccccCCCCceEEeecc----cCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEe
Confidence            999999999988653321    122234468889999999999999999999987666655554

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.93  E-value=1e-23  Score=206.83  Aligned_cols=239  Identities=18%  Similarity=0.253  Sum_probs=164.6

Q ss_pred             eEEEcCCeEEEEEEE-----eccCCCeEEEEeCCccCCCCCeEEcc-cceEEEccCCCCCCeEEEEEEEeCCceEEEEEE
Q psy15127         81 ATVLSGSVVEFVCRV-----GGDPLPTILWRRDDGKMPTGRAKILD-DRSLQIENVGPQDEGLYICDVENLVGSISLRAS  154 (633)
Q Consensus        81 ~~~~~G~~~~L~C~~-----~~~p~p~i~W~~~~~~i~~~~~~~~~-~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~  154 (633)
                      ..+.+|+.+.|.|.+     .|.|.+.++|+|+|....  +..... +..|.|.++..+|+|.|+|.+.|..|..+..+.
T Consensus        36 ~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~--~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~  113 (326)
T PHA02785         36 FMELENEPVILPCPQINTLSSGYNILDILWEKRGADND--RIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLN  113 (326)
T ss_pred             hhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc--eEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEE
Confidence            346689999999997     588889999999985422  222222 345889999999999999999999988888888


Q ss_pred             EEEEeec-cccccCCCceEEecCCcEEEEEeC----CCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEE----ee
Q psy15127        155 LTVHLLR-DDFRAEPKDTRVASGETALLECGP----PKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV----RP  225 (633)
Q Consensus       155 l~V~~~~-p~~~~~~~~~~~~~g~~~~l~C~~----~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g  225 (633)
                      |+|.... +.+...+....+.+|..+.|.|..    ..+.|++.+.|++++. +  ............+.+.++    .|
T Consensus       114 L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~--~~~r~~~~~~~~L~i~~v~~~d~G  190 (326)
T PHA02785        114 LTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L--RNKRLKQRTPGIITIEDVRKNDAG  190 (326)
T ss_pred             EEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c--CCcceEecCCCeEEEeecChhhCe
Confidence            8887652 223323444567799999999972    2457889999988642 2  112222222345555544    38


Q ss_pred             eEEEEeecCCCCCCc-------c------cc--cccceeEEecCCceEEEEEEEeeecCC---eeEEEECCEEEEeccCC
Q psy15127        226 LYWNVARPRANLNPR-------Y------IG--RKMASLLIWNHPRVNRLSCFAEGSPLP---SVFWTQEGSQVLMFPGN  287 (633)
Q Consensus       226 ~y~C~a~~~~~~~p~-------~------~~--~~~~~~~~~~~g~~~~l~C~~~g~p~~---~v~W~~~g~~~~~~~~~  287 (633)
                      .|+|.+.|..+....       +      ..  ...+.......|+.++|.|.+.|.|.+   .+.|.+||..+......
T Consensus       191 ~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~  270 (326)
T PHA02785        191 YYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDED  270 (326)
T ss_pred             EEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCC
Confidence            999999987652100       0      00  011233455679999999999998874   89999999876422111


Q ss_pred             ccceEEEc-----------cCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127        288 AYGHLHVT-----------QEGTLRIQGVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       288 ~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                      ...++...           ..+.|.|.+++.+|.|.|+|.|.|..|..
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~  318 (326)
T PHA02785        271 GDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS  318 (326)
T ss_pred             CceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence            11122111           13579999999999999999999988443

>KOG4194|consensus

Probab=99.89  E-value=1.5e-22  Score=197.34  Aligned_cols=188  Identities=26%  Similarity=0.475  Sum_probs=156.7

Q ss_pred             CceEEEcCCCC--CCeEEEEEEe-------------cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCcc
Q psy15127         47 GSVLGARGALS--DDQWKLIAKE-------------ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK  111 (633)
Q Consensus        47 ~~~L~i~~v~~--~G~Y~C~a~~-------------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~  111 (633)
                      -+.|.+.||+.  +|.|+|.++|             |...|.|+..|.+..+..|+.+.|.|.+.|+|.|+|.|.|+|..
T Consensus       573 ~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggt  652 (873)
T KOG4194|consen  573 TAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGT  652 (873)
T ss_pred             hheeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCC
Confidence            35699999998  9999999999             66789999999999999999999999999999999999998876


Q ss_pred             -CCCC---CeEEc-ccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCC
Q psy15127        112 -MPTG---RAKIL-DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPP  186 (633)
Q Consensus       112 -i~~~---~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~  186 (633)
                       .+..   |..+. ++..+.|.||..+|+|.|+|.|.|.+|..++.+.|+|.+. |.+..+-.+..+..|+++.|.|. .
T Consensus       653 dFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~-p~f~~PL~~~~V~~get~vlqC~-a  730 (873)
T KOG4194|consen  653 DFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLET-PSFSIPLEDQLVVVGETLVLQCL-A  730 (873)
T ss_pred             CCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecC-CcccccccceEEEecceEEEEEe-c
Confidence             5543   22333 4678999999999999999999999999999999999999 89998999999999999999999 5


Q ss_pred             CCCCC-CeEEEEECCEEeccCCCeeEEeccceee----eEEEeeeEEEEeecCCC
Q psy15127        187 KGQPE-PTLHWKKNGQFIDLESSKSLDLSRRTLG----WLRVRPLYWNVARPRAN  236 (633)
Q Consensus       187 ~~~p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~y~C~a~~~~~  236 (633)
                      .+.|. |.+.|+|+.+++-...+..+...+-.+.    .....|.|+|...+..+
T Consensus       731 ~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~  785 (873)
T KOG4194|consen  731 EGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLG  785 (873)
T ss_pred             CCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeecc
Confidence            66666 9999999999886554333222211111    13346899999888755

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.83  E-value=6e-19  Score=173.20  Aligned_cols=189  Identities=17%  Similarity=0.247  Sum_probs=128.7

Q ss_pred             CceEEEcCCCC--CCeEEEEEEe------------c--CcCCeeeeCCCceEEEcCCeEEEEEE-----EeccCCCeEEE
Q psy15127         47 GSVLGARGALS--DDQWKLIAKE------------A--LIKPFPISEPSDATVLSGSVVEFVCR-----VGGDPLPTILW  105 (633)
Q Consensus        47 ~~~L~i~~v~~--~G~Y~C~a~~------------v--~~~p~~~~~~~~~~~~~G~~~~L~C~-----~~~~p~p~i~W  105 (633)
                      +..|.|.+++.  +|.|+|.|+|            |  ..+|.+...+....+.+|..+.|.|.     ..+.|.+.|+|
T Consensus        81 g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W  160 (326)
T PHA02785         81 GSNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIW  160 (326)
T ss_pred             CceEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEE
Confidence            34588998887  9999999999            1  11122222233455779999999997     23578889999


Q ss_pred             EeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEE----EEEEEEEEeec-cccccCCCceEEecCCcEE
Q psy15127        106 RRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSIS----LRASLTVHLLR-DDFRAEPKDTRVASGETAL  180 (633)
Q Consensus       106 ~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s----~~~~l~V~~~~-p~~~~~~~~~~~~~g~~~~  180 (633)
                      ++++ .+...+.....++.|.|.+++.+|+|.|+|.|.|..|...    ..+.|.|..+. |.....|....+..|+.+.
T Consensus       161 ~k~~-~~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~  239 (326)
T PHA02785        161 SGHR-RLRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLT  239 (326)
T ss_pred             ccCC-ccCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEE
Confidence            9865 3445555555567999999999999999999999877643    34456565321 2223456677788899999


Q ss_pred             EEEeCCCCCCC---CeEEEEECCEEeccCCC---eeEEec------------cceeeeEEE----eeeEEEEeecCCCC
Q psy15127        181 LECGPPKGQPE---PTLHWKKNGQFIDLESS---KSLDLS------------RRTLGWLRV----RPLYWNVARPRANL  237 (633)
Q Consensus       181 l~C~~~~~~p~---~~i~W~~~~~~~~~~~~---~~~~~~------------~~~~~~~~~----~g~y~C~a~~~~~~  237 (633)
                      |.|. +.|.|.   +.+.|++||..+...+.   ..+...            ...|.+..+    .|.|+|.|.|..+.
T Consensus       240 L~C~-a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~  317 (326)
T PHA02785        240 IACR-VSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSI  317 (326)
T ss_pred             EEEE-EECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence            9999 566554   48999999998754321   111110            112222222    38999999997753

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.77  E-value=2.6e-17  Score=151.01  Aligned_cols=120  Identities=23%  Similarity=0.284  Sum_probs=87.8

Q ss_pred             CCceEEEcCCeEEEEEEEeccC-----------CCeEEEEeCCccC--C--CCC---------eEEcccceEEEccCCCC
Q psy15127         78 PSDATVLSGSVVEFVCRVGGDP-----------LPTILWRRDDGKM--P--TGR---------AKILDDRSLQIENVGPQ  133 (633)
Q Consensus        78 ~~~~~~~~G~~~~L~C~~~~~p-----------~p~i~W~~~~~~i--~--~~~---------~~~~~~~~L~i~~v~~~  133 (633)
                      ...+.+.+|+++.|.|.+.+.+           .+.+.|+|++...  .  ..+         .....++.|.|.+++.+
T Consensus        29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~  108 (227)
T PHA02826         29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINI  108 (227)
T ss_pred             cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChH
Confidence            4567789999999999986644           3479999987542  1  111         11122468999999999


Q ss_pred             CCeEEEEEEEeCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCC----CCCCeEEEEECCEEec
Q psy15127        134 DEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKG----QPEPTLHWKKNGQFID  204 (633)
Q Consensus       134 d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~----~p~~~i~W~~~~~~~~  204 (633)
                      |+|.|+|.|.|..+.....+.|.|...       +....+.+|+.+.|.|.+..+    .|.++|+|+|+|..+.
T Consensus       109 DsG~Y~C~a~N~~~~~~~~i~L~V~~~-------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~  176 (227)
T PHA02826        109 DEGIYICTISSGNICEESTIRLTFDSG-------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVL  176 (227)
T ss_pred             HCEEEEEEEEECCcceEEEEEEEEecC-------CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECC
Confidence            999999999998888888888888532       224467789999999985433    3466777777776553

>KOG3515|consensus

Probab=99.73  E-value=5.6e-16  Score=159.95  Aligned_cols=321  Identities=16%  Similarity=0.149  Sum_probs=193.4

Q ss_pred             ccccCCCCCCCCCCccccccceeeEEEEecccCCCCCceEEeeCceEEEcCCCC--CCeEEEEEEe-------------c
Q psy15127          4 HLDTNHAHPMSSPRAEIEPATRTNRVSISGDPGFDSRRSRSIFGSVLGARGALS--DDQWKLIAKE-------------A   68 (633)
Q Consensus         4 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~--~G~Y~C~a~~-------------v   68 (633)
                      ...+.|..-..+|.+.+.|+.-+.+.+         .|.....+.+|.......  -+.|.|++.|             +
T Consensus        24 ~v~l~C~v~~~pp~~~~eW~h~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v   94 (741)
T KOG3515|consen   24 DVPLPCRVNSNPPEIDVEWYHSTSGEH---------GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDV   94 (741)
T ss_pred             cceeeeecCCCCCCcceEEEecCcccc---------cccccccCCceeeecchhhhhhhhhhhhcccccCceecceeecc
Confidence            445556666666677777544333332         333344557788777665  9999999999             4


Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEe--ccCCCeEEEEeCCccCCCC---C---------eEEcccceEEEccCCCCC
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVG--GDPLPTILWRRDDGKMPTG---R---------AKILDDRSLQIENVGPQD  134 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~--~~p~p~i~W~~~~~~i~~~---~---------~~~~~~~~L~i~~v~~~d  134 (633)
                      ..+|.-...........+..+.+.|.+.  +.|.+.+.|++++......   +         ........|.+...+.+|
T Consensus        95 ~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~  174 (741)
T KOG3515|consen   95 DYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKAD  174 (741)
T ss_pred             ccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecC
Confidence            4455444445556677889999999764  5677889999987643210   0         011234568899999999


Q ss_pred             CeEEEEEEEeC---CceEEEEEEEEEEeeccccccC--CCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCe
Q psy15127        135 EGLYICDVENL---VGSISLRASLTVHLLRDDFRAE--PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK  209 (633)
Q Consensus       135 ~G~Y~C~~~n~---~g~~s~~~~l~V~~~~p~~~~~--~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~  209 (633)
                      .|+|+|.|.+.   .+.......+.|..+...+...  ..-..+.+|+.+.|.|.+..++|.+.++|+++..........
T Consensus       175 ~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~  254 (741)
T KOG3515|consen  175 NGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLL  254 (741)
T ss_pred             CceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcc
Confidence            99999999874   3333444445554443333222  222577899999999998889999999999988776543111


Q ss_pred             eEEecccee--eeEEEe------eeEEEEeec-------CCCCCCcccccccceeEEecCCceEEEEEEE-eeecCCeeE
Q psy15127        210 SLDLSRRTL--GWLRVR------PLYWNVARP-------RANLNPRYIGRKMASLLIWNHPRVNRLSCFA-EGSPLPSVF  273 (633)
Q Consensus       210 ~~~~~~~~~--~~~~~~------g~y~C~a~~-------~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~v~  273 (633)
                      .........  ......      -...|.+.|       .+...+............+..|+...+.|.. .++|+..+.
T Consensus       255 ~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~  334 (741)
T KOG3515|consen  255 SQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNLLAASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIA  334 (741)
T ss_pred             cCCCCCCcccccccccccccchhhhhhccccCccccceeeecccccccccccCcccccccccccccceeccCCCCcccee
Confidence            000000000  000111      245699988       1111111222222233336677888899887 456778999


Q ss_pred             EEECCEEEEeccCCccceE--EEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127        274 WTQEGSQVLMFPGNAYGHL--HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR  333 (633)
Q Consensus       274 W~~~g~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  333 (633)
                      |+++...............  .....-.+........|.|.|+|.+.+.......+..+.+.
T Consensus       335 w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~  396 (741)
T KOG3515|consen  335 WYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLP  396 (741)
T ss_pred             eeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceecc
Confidence            9997665432221111000  00011146666778889999999999887655555444443

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.68  E-value=4.5e-16  Score=121.13  Aligned_cols=88  Identities=31%  Similarity=0.479  Sum_probs=79.3

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSIS  150 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s  150 (633)
                      +|.|...+.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+.........++.|.|.+++.+|+|.|+|.|.|..|..+
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~   80 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKDK   80 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCceE
Confidence            58899999999999999999999999999999999999998876554445567899999999999999999999999999


Q ss_pred             EEEEEEEE
Q psy15127        151 LRASLTVH  158 (633)
Q Consensus       151 ~~~~l~V~  158 (633)
                      ..+.|.|.
T Consensus        81 ~~~~l~V~   88 (88)
T cd05851          81 HQARVYVQ   88 (88)
T ss_pred             EEEEEEEC
Confidence            88888873

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>KOG0196|consensus

Probab=99.68  E-value=7.6e-16  Score=156.08  Aligned_cols=184  Identities=24%  Similarity=0.225  Sum_probs=137.2

Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCC-CeE---------EEEEeeeeceEEEecCCCC
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQT-GWV---------VAAHRITSTSITVSDLKPD  479 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~-~~~---------~~~~~~~~~~~~i~~L~p~  479 (633)
                      |++|.++.. .++.+++.|.|.+|.+.+  +..-..|.+.++.-+... ...         ......+++.+++.+|.|.
T Consensus       332 PSaP~nlis-~vn~Ts~~L~W~~P~d~G--GR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~ah  408 (996)
T KOG0196|consen  332 PSAPRNLIS-NVNGTSLILEWSPPADTG--GREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLAH  408 (996)
T ss_pred             CCccceeee-ecccceEEEEecCCcccC--CCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEeccccc
Confidence            555666544 488999999999999886  556677888776543211 111         1112234678999999999


Q ss_pred             CeEEEEEEEEeccccCCC---CCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcc
Q psy15127        480 TSYMFIVRAENSHGLGIP---SPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQ  556 (633)
Q Consensus       480 ~~Y~~~v~a~n~~G~g~~---s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~  556 (633)
                      +.|.|.|.|.|.+..-.+   .....-++|.+..|++.+.+                +....+.++|+|+|..|      
T Consensus       409 ~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~----------------r~~~~~~~sitlsW~~p------  466 (996)
T KOG0196|consen  409 TNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVL----------------RQVSRTSDSITLSWSEP------  466 (996)
T ss_pred             cccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceE----------------EEeeeccCceEEecCCC------
Confidence            999999999998654222   22223356777777777666                88889999999999977      


Q ss_pred             cccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        557 HLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       557 ~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                        ..++|.|.-| .+.|.+++.++        ..+  ..+  ....+..+|.+|+|++.|.|+|+|.+.+|.|+.|.
T Consensus       467 --~~png~ildY-Evky~ek~~~e--------~~~--~~~--~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~  528 (996)
T KOG0196|consen  467 --DQPNGVILDY-EVKYYEKDEDE--------RSY--STL--KTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSG  528 (996)
T ss_pred             --CCCCCcceeE-EEEEeeccccc--------cce--eEE--ecccceEEeeccCCCcEEEEEEEEecccCCCCCCC
Confidence              6778999999 99999887654        112  222  24578899999999999999999999999999874

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.64  E-value=2.2e-15  Score=119.65  Aligned_cols=89  Identities=31%  Similarity=0.425  Sum_probs=79.7

Q ss_pred             CeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCC-eEEc---ccceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127         72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR-AKIL---DDRSLQIENVGPQDEGLYICDVENLVG  147 (633)
Q Consensus        72 p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~-~~~~---~~~~L~i~~v~~~d~G~Y~C~~~n~~g  147 (633)
                      |.|+..|.++.+..|+.+.|.|.+.|.|.+.+.|+|+|..+..+. ....   ..+.|.|.++..+|+|.|+|.|.|..|
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G   80 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG   80 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence            678889999999999999999999999999999999999987543 3332   246899999999999999999999999


Q ss_pred             eEEEEEEEEEEee
Q psy15127        148 SISLRASLTVHLL  160 (633)
Q Consensus       148 ~~s~~~~l~V~~~  160 (633)
                      ...+.+.|.|.+.
T Consensus        81 ~~~~~~~l~V~~~   93 (98)
T cd05762          81 SRQAQVNLTVVDK   93 (98)
T ss_pred             ceeEEEEEEEecC
Confidence            9999999999987

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.59  E-value=2.2e-14  Score=112.18  Aligned_cols=88  Identities=32%  Similarity=0.594  Sum_probs=76.7

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSIS  150 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s  150 (633)
                      ||.+...|.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+.........++.|.|.+++.+|+|.|+|.|.|..|..+
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   80 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKDT   80 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcEE
Confidence            46778888999999999999999999999999999998887655444445678999999999999999999999999988


Q ss_pred             EEEEEEEE
Q psy15127        151 LRASLTVH  158 (633)
Q Consensus       151 ~~~~l~V~  158 (633)
                      ..+.|.|.
T Consensus        81 ~~~~l~V~   88 (88)
T cd04968          81 HQGRIYVQ   88 (88)
T ss_pred             EEEEEEEC
Confidence            88888773

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.58  E-value=3.8e-14  Score=130.22  Aligned_cols=111  Identities=15%  Similarity=0.202  Sum_probs=82.1

Q ss_pred             CceEEEcCCCC--CCeEEEEEEe------cCcCCeeeeCCCceEEEcCCeEEEEEEEec-----cCCCeEEEEeCCccCC
Q psy15127         47 GSVLGARGALS--DDQWKLIAKE------ALIKPFPISEPSDATVLSGSVVEFVCRVGG-----DPLPTILWRRDDGKMP  113 (633)
Q Consensus        47 ~~~L~i~~v~~--~G~Y~C~a~~------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~-----~p~p~i~W~~~~~~i~  113 (633)
                      +++|.|.+++.  +|.|+|.|.|      ......+...+.+..+.+|+.+.|.|.+.+     .|.|.|+|+|+|.++.
T Consensus        97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~  176 (227)
T PHA02826         97 SENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVL  176 (227)
T ss_pred             CCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECC
Confidence            57899999999  9999999999      111222333344567789999999999853     4578999999999986


Q ss_pred             CC-CeEEc-ccceEEEccCCCCCCeEEEEEEEeCC-ce---EEEEEEEEE
Q psy15127        114 TG-RAKIL-DDRSLQIENVGPQDEGLYICDVENLV-GS---ISLRASLTV  157 (633)
Q Consensus       114 ~~-~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~n~~-g~---~s~~~~l~V  157 (633)
                      .+ +.... .++.|.|.+++.+|+|.|+|.|.... |.   .++.+.|+|
T Consensus       177 ~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~g~~y~~t~~~~~~~  226 (227)
T PHA02826        177 YTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNKNSNNYNITKEYKVTI  226 (227)
T ss_pred             CCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeECCEEEEEEEEEEEEE
Confidence            54 33333 24589999999999999999998654 33   344444443

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.58  E-value=1.3e-14  Score=112.38  Aligned_cols=84  Identities=26%  Similarity=0.480  Sum_probs=75.3

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEE
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRA  153 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~  153 (633)
                      |+..|.+..+.+|+.+.|.|.+.|.|.|.+.|+|++..+.........++.|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   81 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASA   81 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEE
Confidence            45678889999999999999999999999999999999876655555678999999999999999999999999988888


Q ss_pred             EEEE
Q psy15127        154 SLTV  157 (633)
Q Consensus       154 ~l~V  157 (633)
                      .|.|
T Consensus        82 ~l~V   85 (85)
T cd05728          82 ELAV   85 (85)
T ss_pred             EEEC
Confidence            8765

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.55  E-value=2.6e-14  Score=107.51  Aligned_cols=73  Identities=36%  Similarity=0.692  Sum_probs=64.9

Q ss_pred             cCCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127         85 SGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV  157 (633)
Q Consensus        85 ~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V  157 (633)
                      +|+++.|.|.+.|.|.|.|+|+|++..+..+ +.....++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            6899999999999999999999999988654 344556779999999999999999999999999988888875

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.55  E-value=3e-14  Score=106.04  Aligned_cols=72  Identities=33%  Similarity=0.533  Sum_probs=64.1

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCccCCC-CCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127         86 GSVVEFVCRVGGDPLPTILWRRDDGKMPT-GRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV  157 (633)
Q Consensus        86 G~~~~L~C~~~~~p~p~i~W~~~~~~i~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V  157 (633)
                      |+.+.|.|.+.|.|.|.|+|+|++..+.. .+..+..+++|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            78899999999999999999999987754 4555667789999999999999999999999999998888875

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.54  E-value=6.3e-14  Score=110.54  Aligned_cols=86  Identities=30%  Similarity=0.539  Sum_probs=74.9

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEcc---cceEEEccCCCCCCeEEEEEEEeC
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILD---DRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      .+|.|+..|.+..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+ +.....   .+.|.|.+++.+|+|.|+|.|.|.
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   81 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS   81 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence            4789999999999999999999999999999999999999887654 333322   358999999999999999999999


Q ss_pred             CceEEEEEEE
Q psy15127        146 VGSISLRASL  155 (633)
Q Consensus       146 ~g~~s~~~~l  155 (633)
                      .|..+..+.|
T Consensus        82 ~G~~~~~~~l   91 (92)
T cd05747          82 EGKQEAQFTL   91 (92)
T ss_pred             CCCEeEEEEe
Confidence            9998887766

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.54  E-value=7.2e-14  Score=110.91  Aligned_cols=80  Identities=23%  Similarity=0.293  Sum_probs=68.9

Q ss_pred             CceEEEcCCeEEEEEEEec-cCCCeEEEEeCCccCCCCCe-EEcc--------cceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         79 SDATVLSGSVVEFVCRVGG-DPLPTILWRRDDGKMPTGRA-KILD--------DRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        79 ~~~~~~~G~~~~L~C~~~~-~p~p~i~W~~~~~~i~~~~~-~~~~--------~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      ..+.+.+|+++.|.|.+.| .|.|.+.|+|||.+|..... ....        .+.|.|.++..+|+|.|+|.|.|..|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~   90 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence            3678999999999999999 89999999999999975432 2221        267999999999999999999999999


Q ss_pred             EEEEEEEEEE
Q psy15127        149 ISLRASLTVH  158 (633)
Q Consensus       149 ~s~~~~l~V~  158 (633)
                      .+..+.|.|.
T Consensus        91 ~~~t~~L~V~  100 (101)
T cd04975          91 KSLTFELYVN  100 (101)
T ss_pred             EEEEEEEEEE
Confidence            9999998886

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.52  E-value=1.3e-13  Score=104.27  Aligned_cols=72  Identities=25%  Similarity=0.538  Sum_probs=63.3

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCccCCCC---CeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127         86 GSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV  157 (633)
Q Consensus        86 G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~---~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V  157 (633)
                      |+.++|.|.+.|.|.|.++|+|+|..+...   ......++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            789999999999999999999999987542   234445678999999999999999999999999988888877

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.51  E-value=1.3e-13  Score=102.52  Aligned_cols=73  Identities=21%  Similarity=0.420  Sum_probs=64.4

Q ss_pred             CceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127        255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      |+++.|.|.+.|.|.|.+.|+|++..+.     ...++.+..+++|.|.++..+|.|.|+|.|.|..|....++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~-----~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLV-----NNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecc-----cCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            5789999999999999999999998663     224666777889999999999999999999999999999988864

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.51  E-value=1.6e-13  Score=108.18  Aligned_cols=82  Identities=27%  Similarity=0.509  Sum_probs=68.6

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEc-c---cceEEEccCCCCCCeEEEEEEEeCCceEE
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKIL-D---DRSLQIENVGPQDEGLYICDVENLVGSIS  150 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~-~---~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s  150 (633)
                      .-|..+.+.+|+++.|.|.+.|.|.|.+.|+|++..+... +.... .   ...|.|.+++.+|+|.|+|.|.|..|..+
T Consensus         6 ~lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   85 (92)
T cd05737           6 GLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGET   85 (92)
T ss_pred             cCCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcce
Confidence            3456678999999999999999999999999999988643 32322 1   24799999999999999999999999988


Q ss_pred             EEEEEEE
Q psy15127        151 LRASLTV  157 (633)
Q Consensus       151 ~~~~l~V  157 (633)
                      ..+.|.|
T Consensus        86 ~~~~v~v   92 (92)
T cd05737          86 VDVTVSV   92 (92)
T ss_pred             EEEEEeC
Confidence            8887765

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.50  E-value=2.8e-13  Score=107.56  Aligned_cols=90  Identities=18%  Similarity=0.173  Sum_probs=73.0

Q ss_pred             eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEE
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  327 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  327 (633)
                      ....+..|+.+.|.|.+.|.|++.+.|+|+|..+..  ............+.|.|.++..+|+|.|+|.|.|..|....+
T Consensus         8 ~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~--~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~   85 (98)
T cd05762           8 EDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQE--GEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQ   85 (98)
T ss_pred             cCEEEECCCEEEEEEEEcccCCCceEEEECCEEecC--CCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEE
Confidence            345678899999999999999999999999998742  111111111235689999999999999999999999999999


Q ss_pred             EEEEEEecccCC
Q psy15127        328 AFLQVREFCVLP  339 (633)
Q Consensus       328 ~~l~v~~~~~~p  339 (633)
                      +.|.|.+.|..|
T Consensus        86 ~~l~V~~~P~pP   97 (98)
T cd05762          86 VNLTVVDKPDPP   97 (98)
T ss_pred             EEEEEecCCCCC
Confidence            999999876554

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.50  E-value=1.1e-13  Score=103.23  Aligned_cols=69  Identities=30%  Similarity=0.589  Sum_probs=58.7

Q ss_pred             EEEEEEEeccCCCeEEEEeCCccCCC--CCeEEccc--c--eEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127         89 VEFVCRVGGDPLPTILWRRDDGKMPT--GRAKILDD--R--SLQIENVGPQDEGLYICDVENLVGSISLRASLTV  157 (633)
Q Consensus        89 ~~L~C~~~~~p~p~i~W~~~~~~i~~--~~~~~~~~--~--~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V  157 (633)
                      +.|.|.+.|.|.|.|.|+|++..+..  +++.+..+  +  +|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            47999999999999999999998863  34443322  2  7999999999999999999999999999888875

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.50  E-value=1.6e-13  Score=108.31  Aligned_cols=86  Identities=34%  Similarity=0.609  Sum_probs=75.6

Q ss_pred             CeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCC-eEEc---ccceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127         72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR-AKIL---DDRSLQIENVGPQDEGLYICDVENLVG  147 (633)
Q Consensus        72 p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~-~~~~---~~~~L~i~~v~~~d~G~Y~C~~~n~~g  147 (633)
                      |.|...+.++.+.+|+++.|.|.+.+.|.+.+.|++++..+..+. ....   ....|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g   80 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG   80 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence            678889999999999999999999999999999999999886543 2222   246899999999999999999999999


Q ss_pred             eEEEEEEEEE
Q psy15127        148 SISLRASLTV  157 (633)
Q Consensus       148 ~~s~~~~l~V  157 (633)
                      ..+..+.|.|
T Consensus        81 ~~~~~~~l~V   90 (90)
T PF07679_consen   81 EATASVNLTV   90 (90)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEC
Confidence            9999888876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.50  E-value=1.7e-13  Score=103.39  Aligned_cols=73  Identities=22%  Similarity=0.482  Sum_probs=63.1

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCccCCCC---CeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy15127         86 GSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH  158 (633)
Q Consensus        86 G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~---~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~  158 (633)
                      |+.++|.|.+.|.|.|.|+|+|+|.++...   ......++.|.|.+++..|+|.|+|.|.|..|...+.+.|.|.
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~   76 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL   76 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence            788999999999999999999999988532   2233345689999999999999999999999999999998873

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.49  E-value=2.9e-13  Score=104.60  Aligned_cols=78  Identities=28%  Similarity=0.488  Sum_probs=67.0

Q ss_pred             ceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC--CeEEcc---cceEEEccCCCCCCeEEEEEEEeCCceEEEEEE
Q psy15127         80 DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG--RAKILD---DRSLQIENVGPQDEGLYICDVENLVGSISLRAS  154 (633)
Q Consensus        80 ~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~--~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~  154 (633)
                      .+.+.+|+.+.|.|.+.|.|.|.+.|+|++.++...  +.....   .+.|.|.++..+|+|.|+|.|.|..|..+..+.
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~   83 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF   83 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence            467899999999999999999999999999988643  333322   357999999999999999999999999888888


Q ss_pred             EEE
Q psy15127        155 LTV  157 (633)
Q Consensus       155 l~V  157 (633)
                      |.|
T Consensus        84 l~V   86 (86)
T cd05894          84 VKV   86 (86)
T ss_pred             EEC
Confidence            765

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.49  E-value=2e-13  Score=103.93  Aligned_cols=79  Identities=24%  Similarity=0.477  Sum_probs=67.0

Q ss_pred             CCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127         78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV  157 (633)
Q Consensus        78 ~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V  157 (633)
                      |.+..+.+|+.++|.|.+.+. .+.+.|+|+|.++..+......+..|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V   79 (79)
T cd04973           1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV   79 (79)
T ss_pred             CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence            567789999999999999886 5689999999998765444445678999999999999999999999988777776654

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.49  E-value=3e-13  Score=107.60  Aligned_cols=79  Identities=24%  Similarity=0.289  Sum_probs=68.1

Q ss_pred             ceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEc----------ccceEEEccCCCCCCeEEEEEEEeCCceE
Q psy15127         80 DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL----------DDRSLQIENVGPQDEGLYICDVENLVGSI  149 (633)
Q Consensus        80 ~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~  149 (633)
                      ...+..|+.+.|.|.+.|.|.|.+.|+|+|.++..+.....          ..+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            56788899999999999999999999999999875532221          12589999999999999999999999999


Q ss_pred             EEEEEEEEE
Q psy15127        150 SLRASLTVH  158 (633)
Q Consensus       150 s~~~~l~V~  158 (633)
                      +.++.|.|.
T Consensus        92 ~~t~~l~V~  100 (101)
T cd05859          92 SYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEE
Confidence            999988875

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.49  E-value=3.2e-13  Score=105.44  Aligned_cols=86  Identities=27%  Similarity=0.416  Sum_probs=71.1

Q ss_pred             CCeeeeC--CCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEc-ccceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127         71 KPFPISE--PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL-DDRSLQIENVGPQDEGLYICDVENLVG  147 (633)
Q Consensus        71 ~p~~~~~--~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~n~~g  147 (633)
                      +|.|...  +.++.+.+|++++|.|.+.|. .|.|+|+|++..+..++.... .++.|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 ~p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   79 (91)
T cd05740           1 KPVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVS   79 (91)
T ss_pred             CCEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCC
Confidence            3566433  446789999999999999999 999999999998876664443 346899999999999999999999999


Q ss_pred             e-EEEEEEEEE
Q psy15127        148 S-ISLRASLTV  157 (633)
Q Consensus       148 ~-~s~~~~l~V  157 (633)
                      . .+..+.|.|
T Consensus        80 ~~~S~~~~L~V   90 (91)
T cd05740          80 NMTSDPYILNV   90 (91)
T ss_pred             CEEeeeEEEEe
Confidence            7 566777776

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.49  E-value=1.8e-13  Score=99.00  Aligned_cols=66  Identities=26%  Similarity=0.385  Sum_probs=57.3

Q ss_pred             EEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy15127         89 VEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH  158 (633)
Q Consensus        89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~  158 (633)
                      ++|.|.+.|.|.|.++|+|||.++...    ...+.|.|.++..+|+|.|+|.|.|..|..++.+.|.|.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~----~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK----HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc----CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            479999999999999999999988632    134689999999999999999999999988777777764

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.49  E-value=3.2e-13  Score=107.59  Aligned_cols=87  Identities=24%  Similarity=0.460  Sum_probs=71.1

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC------CeEEcc---cceEEEccCCCCCCeEEEEE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG------RAKILD---DRSLQIENVGPQDEGLYICD  141 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~------~~~~~~---~~~L~i~~v~~~d~G~Y~C~  141 (633)
                      +|.|...+....+..|+.++|.|.+.|.|.|.++|++++..+...      +.....   .+.|.|.+++.+|+|.|+|.
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT   81 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence            678877776666667899999999999999999999998776432      222222   25899999999999999999


Q ss_pred             EEeCCceEEEEEEEEE
Q psy15127        142 VENLVGSISLRASLTV  157 (633)
Q Consensus       142 ~~n~~g~~s~~~~l~V  157 (633)
                      |.|..|..+..+.|.|
T Consensus        82 A~N~~G~~~~~~~l~v   97 (97)
T cd05869          82 ASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EecCCCCeeEEEEEEC
Confidence            9999999988888875

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.48  E-value=3.8e-13  Score=107.01  Aligned_cols=89  Identities=27%  Similarity=0.433  Sum_probs=73.0

Q ss_pred             CCeeeeCC--CceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeE-Ecc-cceEEEccCCCCCCeEEEEEEEeC
Q psy15127         71 KPFPISEP--SDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAK-ILD-DRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        71 ~p~~~~~~--~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~-~~~-~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      ||.|...+  .+..+..|+++.|.|.+.|.|.|.+.|+|+|..+... ... ... .+.|.|.+++.+|+|.|+|.|.|.
T Consensus         1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   80 (95)
T cd05730           1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENK   80 (95)
T ss_pred             CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcC
Confidence            45555544  3457899999999999999999999999999988654 222 222 357999999999999999999999


Q ss_pred             CceEEEEEEEEEEe
Q psy15127        146 VGSISLRASLTVHL  159 (633)
Q Consensus       146 ~g~~s~~~~l~V~~  159 (633)
                      .|..+..+.|.|..
T Consensus        81 ~G~~~~~~~L~V~~   94 (95)
T cd05730          81 AGEQEAEIHLKVFA   94 (95)
T ss_pred             CCeEEEEEEEEEEe
Confidence            99999999988864

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.48  E-value=5.8e-13  Score=105.07  Aligned_cols=85  Identities=27%  Similarity=0.397  Sum_probs=69.1

Q ss_pred             CCeeeeCCCceEEEcC---CeEEEEEEEeccCCCeEEEEeCCccCCC--CCeEEcccceEEEccCC-CCCCeEEEEEEEe
Q psy15127         71 KPFPISEPSDATVLSG---SVVEFVCRVGGDPLPTILWRRDDGKMPT--GRAKILDDRSLQIENVG-PQDEGLYICDVEN  144 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G---~~~~L~C~~~~~p~p~i~W~~~~~~i~~--~~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~n  144 (633)
                      .|.|..+|.++.+.+|   ++++|.|.+.|+|.|.|+|+++|..+..  +......++.|.|.++. ..|+|.|+|.|.|
T Consensus         1 ~P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N   80 (94)
T cd05850           1 GPVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAIN   80 (94)
T ss_pred             CCeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEc
Confidence            3788899999887676   5899999999999999999999998853  23344456789998865 6999999999999


Q ss_pred             CCceE-EEEEEE
Q psy15127        145 LVGSI-SLRASL  155 (633)
Q Consensus       145 ~~g~~-s~~~~l  155 (633)
                      ..|.. ++.+.|
T Consensus        81 ~~G~~~s~~a~l   92 (94)
T cd05850          81 RCGTVVSREANL   92 (94)
T ss_pred             CcCcEEEEEEEE
Confidence            99985 455554

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.48  E-value=2.1e-13  Score=102.60  Aligned_cols=74  Identities=35%  Similarity=0.547  Sum_probs=63.6

Q ss_pred             CCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127        254 HPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       254 ~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      +|+++.|.|.+.|.|.|.+.|+|+|..+..     ..+.....++.|.|.++..+|.|.|+|.|.|..|..+.++.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~-----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSV-----DRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCC-----CCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            478999999999999999999999987642     12344556779999999999999999999999999999888764

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.48  E-value=5.1e-13  Score=105.13  Aligned_cols=83  Identities=25%  Similarity=0.459  Sum_probs=67.6

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccCC-CeEEEEe-CCccCCC-C-CeEEcc----cceEEEccCCCCCCeEEEEEEEeCC
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDPL-PTILWRR-DDGKMPT-G-RAKILD----DRSLQIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p~-p~i~W~~-~~~~i~~-~-~~~~~~----~~~L~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      ...|....+.+|++++|.|.+.|.|. |.++|++ ++..+.. + +.....    .++|.|.+++.+|+|.|+|.|.|..
T Consensus         4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   83 (96)
T cd05865           4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNED   83 (96)
T ss_pred             EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCC
Confidence            45677788999999999999999985 6999998 7776654 3 222222    2589999999999999999999997


Q ss_pred             -ceEEEEEEEEE
Q psy15127        147 -GSISLRASLTV  157 (633)
Q Consensus       147 -g~~s~~~~l~V  157 (633)
                       |..++++.|.|
T Consensus        84 ~g~~~~s~~l~v   95 (96)
T cd05865          84 EGESEATVNVKI   95 (96)
T ss_pred             CCcEEEEEEEEE
Confidence             77888888876

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.48  E-value=2.6e-13  Score=100.70  Aligned_cols=70  Identities=23%  Similarity=0.368  Sum_probs=61.8

Q ss_pred             EEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy15127         89 VEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH  158 (633)
Q Consensus        89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~  158 (633)
                      +.|.|.+.|.|.|.++|+|+|..+..+.......++|.|.+++.+|+|.|+|.|.|..|..+..+.+.|.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            4699999999999999999999997766666667899999999999999999999999988777777664

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.48  E-value=3.5e-13  Score=105.78  Aligned_cols=84  Identities=26%  Similarity=0.499  Sum_probs=70.4

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEE----cccceEEEccCCCCCCeEEEEEEEeCCceE
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKI----LDDRSLQIENVGPQDEGLYICDVENLVGSI  149 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~  149 (633)
                      ++..|.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...+...    .....|.|.++..+|.|.|+|.|.|..|..
T Consensus         3 ~v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~   82 (90)
T cd04972           3 PVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQA   82 (90)
T ss_pred             cccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCce
Confidence            3455667779999999999999999999999999999876543221    223589999999999999999999999998


Q ss_pred             EEEEEEEE
Q psy15127        150 SLRASLTV  157 (633)
Q Consensus       150 s~~~~l~V  157 (633)
                      ...+.|.|
T Consensus        83 ~~~~~L~v   90 (90)
T cd04972          83 NVSVQVTV   90 (90)
T ss_pred             eEEEEEeC
Confidence            88888764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.47  E-value=5.3e-13  Score=105.21  Aligned_cols=84  Identities=36%  Similarity=0.527  Sum_probs=68.0

Q ss_pred             CeeeeCCCceEEE---cCCeEEEEEEEeccCCCeEEEEeCCccCCCC--CeEEcccceEEEccCC-CCCCeEEEEEEEeC
Q psy15127         72 PFPISEPSDATVL---SGSVVEFVCRVGGDPLPTILWRRDDGKMPTG--RAKILDDRSLQIENVG-PQDEGLYICDVENL  145 (633)
Q Consensus        72 p~~~~~~~~~~~~---~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~--~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~n~  145 (633)
                      |.|+..|.++.+.   +|+.++|.|.+.|.|.|.|+|+|+|..+...  ......++.|.|.++. .+|+|.|+|.|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~   81 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNS   81 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcC
Confidence            7888888887654   4789999999999999999999999988542  2334456789999985 69999999999999


Q ss_pred             CceE-EEEEEE
Q psy15127        146 VGSI-SLRASL  155 (633)
Q Consensus       146 ~g~~-s~~~~l  155 (633)
                      .|.. +..+.|
T Consensus        82 ~G~~~S~~~~l   92 (94)
T cd05848          82 IGSILSREALL   92 (94)
T ss_pred             CCeEEeccEEE
Confidence            9985 444443

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.47  E-value=2.2e-13  Score=100.98  Aligned_cols=69  Identities=64%  Similarity=1.177  Sum_probs=62.5

Q ss_pred             EEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127         89 VEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV  157 (633)
Q Consensus        89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V  157 (633)
                      ++|.|.+.|.|.|.+.|+|++..+...+.....++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            479999999999999999999888777777777889999999999999999999999999888888765

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.47  E-value=5.3e-13  Score=104.66  Aligned_cols=85  Identities=28%  Similarity=0.484  Sum_probs=68.7

Q ss_pred             CCeeeeCCCceEEEcCC---eEEEEEEEeccCCCeEEEEeCCccCCC-CCeEEcccceEEEccCC-CCCCeEEEEEEEeC
Q psy15127         71 KPFPISEPSDATVLSGS---VVEFVCRVGGDPLPTILWRRDDGKMPT-GRAKILDDRSLQIENVG-PQDEGLYICDVENL  145 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~---~~~L~C~~~~~p~p~i~W~~~~~~i~~-~~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~n~  145 (633)
                      .|.|..+|.+..+.++.   .+.|.|.+.|.|.|.|+|+|++..+.. .......++.|.|.++. .+|+|.|+|.|.|.
T Consensus         1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~   80 (93)
T cd05849           1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNI   80 (93)
T ss_pred             CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeC
Confidence            47888888887665544   899999999999999999999988753 33344557899999985 68999999999999


Q ss_pred             CceE-EEEEEE
Q psy15127        146 VGSI-SLRASL  155 (633)
Q Consensus       146 ~g~~-s~~~~l  155 (633)
                      .|.. +..+.|
T Consensus        81 ~G~~~s~~a~l   91 (93)
T cd05849          81 YGKVRSREATL   91 (93)
T ss_pred             cceEEEccEEE
Confidence            9985 445554

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.47  E-value=3.8e-13  Score=107.43  Aligned_cols=86  Identities=26%  Similarity=0.580  Sum_probs=69.5

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC--CccCC------CCCeEEcc---cceEEEccCCCCCCeEEE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD--DGKMP------TGRAKILD---DRSLQIENVGPQDEGLYI  139 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~--~~~i~------~~~~~~~~---~~~L~i~~v~~~d~G~Y~  139 (633)
                      +|.|.. +.+..+.+|++++|.|.+.|.|.|.|+|+|+  +..+.      .++.....   ...|.|.+++.+|+|.|+
T Consensus         2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~   80 (98)
T cd05870           2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD   80 (98)
T ss_pred             CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence            577754 7789999999999999999999999999994  33332      12333322   358999999999999999


Q ss_pred             EEEEeCCceEEEEEEEEE
Q psy15127        140 CDVENLVGSISLRASLTV  157 (633)
Q Consensus       140 C~~~n~~g~~s~~~~l~V  157 (633)
                      |.|.|..|..+..+.|.|
T Consensus        81 C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          81 CEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEeccCCcceeEEEEeC
Confidence            999999999888887764

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.47  E-value=2.5e-13  Score=101.60  Aligned_cols=69  Identities=32%  Similarity=0.640  Sum_probs=58.6

Q ss_pred             EEEEEEEeccCCCeEEEEeCCccCCCC--CeEEcccc----eEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127         89 VEFVCRVGGDPLPTILWRRDDGKMPTG--RAKILDDR----SLQIENVGPQDEGLYICDVENLVGSISLRASLTV  157 (633)
Q Consensus        89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~--~~~~~~~~----~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V  157 (633)
                      ++|.|.+.|.|.|.|+|+|++..+..+  +.....+.    .|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            579999999999999999999988643  33333332    6999999999999999999999999999888875

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.47  E-value=4.3e-13  Score=99.78  Aligned_cols=70  Identities=34%  Similarity=0.610  Sum_probs=61.0

Q ss_pred             eEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127         88 VVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV  157 (633)
Q Consensus        88 ~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V  157 (633)
                      ++.|.|.+.|.|.|.++|+|++..+... +.....++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            4789999999999999999999887543 445556678999999999999999999999999998888865

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.47  E-value=5e-13  Score=107.92  Aligned_cols=87  Identities=34%  Similarity=0.597  Sum_probs=70.0

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCC------CCeEEcccceEEEc-----cCCCCCCeEEE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT------GRAKILDDRSLQIE-----NVGPQDEGLYI  139 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~------~~~~~~~~~~L~i~-----~v~~~d~G~Y~  139 (633)
                      +|.|...|.+..+.+|+.+.|.|.+.|.|.|.++|+|+|..+..      .+.....++.+.+.     .++.+|+|.|+
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence            58899999999999999999999999999999999999998754      12233334433222     23689999999


Q ss_pred             EEEEeCCce-EEEEEEEEE
Q psy15127        140 CDVENLVGS-ISLRASLTV  157 (633)
Q Consensus       140 C~~~n~~g~-~s~~~~l~V  157 (633)
                      |.|.|..|. .++.+.|.|
T Consensus        81 C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          81 CVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEccccceecceEEEEe
Confidence            999999998 677777776

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.46  E-value=4.7e-13  Score=100.40  Aligned_cols=72  Identities=38%  Similarity=0.582  Sum_probs=63.7

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127         86 GSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV  157 (633)
Q Consensus        86 G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V  157 (633)
                      |+.+.|.|.+.|.|.|.++|+|++..+... +.....++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            788999999999999999999999988543 555556688999999999999999999999999988888765

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.46  E-value=5.8e-13  Score=101.13  Aligned_cols=72  Identities=29%  Similarity=0.525  Sum_probs=63.3

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCccCCCCC---eEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127         86 GSVVEFVCRVGGDPLPTILWRRDDGKMPTGR---AKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV  157 (633)
Q Consensus        86 G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V  157 (633)
                      |+.++|.|.+.|.|.|.|.|+++|..+....   ......+.|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            7899999999999999999999999885432   34445689999999999999999999999999998888877

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.45  E-value=6.6e-13  Score=97.62  Aligned_cols=68  Identities=21%  Similarity=0.464  Sum_probs=57.7

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEE
Q psy15127         86 GSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASL  155 (633)
Q Consensus        86 G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l  155 (633)
                      |++++|.|.+.|.|.|.|+|+|++..+............|.|.+++  |+|.|+|.|.|..|..+..+.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            6889999999999999999999999886554444445689999974  8999999999999998877766

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.45  E-value=6.6e-13  Score=103.21  Aligned_cols=75  Identities=25%  Similarity=0.376  Sum_probs=64.9

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCccCCCC--CeEEcc----c---ceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEE
Q psy15127         86 GSVVEFVCRVGGDPLPTILWRRDDGKMPTG--RAKILD----D---RSLQIENVGPQDEGLYICDVENLVGSISLRASLT  156 (633)
Q Consensus        86 G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~--~~~~~~----~---~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~  156 (633)
                      |+.++|.|.+.|.|.+.++|+|++..+...  ++.+..    +   +.|.|.++..+|+|.|+|.|.|..|..+..+.|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            789999999999999999999999888542  333221    1   5799999999999999999999999999999999


Q ss_pred             EEee
Q psy15127        157 VHLL  160 (633)
Q Consensus       157 V~~~  160 (633)
                      |..+
T Consensus        81 V~~~   84 (88)
T cd05735          81 VQEP   84 (88)
T ss_pred             EeCC
Confidence            9986

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.44  E-value=8.2e-13  Score=98.58  Aligned_cols=71  Identities=34%  Similarity=0.583  Sum_probs=58.4

Q ss_pred             EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc--cCc--eEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127        258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT--QEG--TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~--~~~--~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      +.|.|.+.|.|.|.+.|+|+|..+...    ..++.+.  ..+  +|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~----~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYN----TDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCC----CCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            479999999999999999999877421    1244432  222  7999999999999999999999999999988865

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.44  E-value=8.9e-13  Score=104.73  Aligned_cols=84  Identities=40%  Similarity=0.624  Sum_probs=70.6

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC---CeEEcccceEEEccC-----CCCCCeEEEEEEEeC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRSLQIENV-----GPQDEGLYICDVENL  145 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~---~~~~~~~~~L~i~~v-----~~~d~G~Y~C~~~n~  145 (633)
                      |...|.+..+.+|+++.|.|.+.|.|.|.++|+|+|..+...   +.....++.|.|.++     +.+|+|.|+|.|.|.
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~   81 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQND   81 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECC
Confidence            567888999999999999999999999999999999988643   244556677888877     589999999999999


Q ss_pred             -CceE-EEEEEEEE
Q psy15127        146 -VGSI-SLRASLTV  157 (633)
Q Consensus       146 -~g~~-s~~~~l~V  157 (633)
                       .|.. +..+.|.|
T Consensus        82 ~~G~~~s~~~~l~v   95 (95)
T cd05722          82 SLGSIVSRTARLTV   95 (95)
T ss_pred             ccCcEEEeeeEEeC
Confidence             8885 77777764

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.44  E-value=1.1e-12  Score=104.61  Aligned_cols=86  Identities=28%  Similarity=0.503  Sum_probs=70.7

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC------CeEEcc---cceEEEccCCCCCCeEEEEE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG------RAKILD---DRSLQIENVGPQDEGLYICD  141 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~------~~~~~~---~~~L~i~~v~~~d~G~Y~C~  141 (633)
                      +|.|. .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...      +.....   .+.|.|.+++.+|+|.|+|.
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   80 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE   80 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence            67775 566788999999999999999999999999998766432      222222   25899999999999999999


Q ss_pred             EEeCCceEEEEEEEEE
Q psy15127        142 VENLVGSISLRASLTV  157 (633)
Q Consensus       142 ~~n~~g~~s~~~~l~V  157 (633)
                      |.|..|..+..+.|.|
T Consensus        81 a~N~~G~~~~s~~l~v   96 (96)
T cd05732          81 ASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEeCCCCcEEEEEEeC
Confidence            9999999888887764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.43  E-value=9.2e-13  Score=98.50  Aligned_cols=71  Identities=37%  Similarity=0.622  Sum_probs=58.5

Q ss_pred             EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCc----eEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127        258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG----TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~----~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      +.|.|.+.|.|.|.+.|+|++..+..    ...++....+.    .|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~----~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTH----NTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCC----CCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            47999999999999999999987742    12344443322    6999999999999999999999999999988864

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.43  E-value=1.2e-12  Score=97.44  Aligned_cols=71  Identities=28%  Similarity=0.557  Sum_probs=60.2

Q ss_pred             eEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127        257 VNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       257 ~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      ++.|.|.+.|.|.|.++|+|+|..+.     ...+.....++.|.|.++..+|.|.|+|.|.|..|..+.++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~-----~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVI-----PSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECC-----CCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            47899999999999999999998764     123345556678999999999999999999999999999888764

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.43  E-value=1e-12  Score=103.07  Aligned_cols=75  Identities=35%  Similarity=0.665  Sum_probs=65.0

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCccC---------CCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEE
Q psy15127         86 GSVVEFVCRVGGDPLPTILWRRDDGKM---------PTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLT  156 (633)
Q Consensus        86 G~~~~L~C~~~~~p~p~i~W~~~~~~i---------~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~  156 (633)
                      |++++|.|.+.|.|.|.+.|+|++..+         ...++....++.|+|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE   80 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence            789999999999999999999988643         12344555567899999999999999999999999999999999


Q ss_pred             EEee
Q psy15127        157 VHLL  160 (633)
Q Consensus       157 V~~~  160 (633)
                      |...
T Consensus        81 V~~~   84 (90)
T cd05726          81 VTDV   84 (90)
T ss_pred             Eeec
Confidence            9875

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.43  E-value=2.1e-12  Score=97.63  Aligned_cols=75  Identities=27%  Similarity=0.483  Sum_probs=62.4

Q ss_pred             CceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127        255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      |+++.|.|.+.|.|.|+++|+++|..+....  ...+.. ..++.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~--~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTD--PDPRRH-VSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCC--CCceEE-eeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            5789999999999999999999998764211  112332 34678999999999999999999999999999888876

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.42  E-value=1.4e-12  Score=101.82  Aligned_cols=81  Identities=40%  Similarity=0.679  Sum_probs=67.9

Q ss_pred             CCCceEEEcCCeEEEEEEE-eccCCCeEEEEeCCccCCC--CCeEEcccceEEEccCCCCCCeEEEEEEEeCCceE-EEE
Q psy15127         77 EPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPT--GRAKILDDRSLQIENVGPQDEGLYICDVENLVGSI-SLR  152 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~-~~~p~p~i~W~~~~~~i~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~-s~~  152 (633)
                      .|.+..+.+|+++.|.|.+ .+.|.|.+.|+|++..+..  .+.....++.|.|.+++.+|+|.|+|.|.|..|.. +..
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~   81 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAA   81 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeee
Confidence            5678889999999999998 6899999999999988764  34455556799999999999999999999999874 556


Q ss_pred             EEEEE
Q psy15127        153 ASLTV  157 (633)
Q Consensus       153 ~~l~V  157 (633)
                      +.|.|
T Consensus        82 ~~l~V   86 (86)
T cd05724          82 ARLSV   86 (86)
T ss_pred             EEEEC
Confidence            65543

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.42  E-value=9.3e-13  Score=97.96  Aligned_cols=70  Identities=34%  Similarity=0.657  Sum_probs=60.2

Q ss_pred             EEEEEEEeccCCCeEEEEeCCccCCCCCeE-EcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy15127         89 VEFVCRVGGDPLPTILWRRDDGKMPTGRAK-ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH  158 (633)
Q Consensus        89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~  158 (633)
                      +.|.|.+.|.|.|.+.|+|++..+..++.. ....++|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve   71 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE   71 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence            479999999999999999999877654333 3346799999999999999999999999999888888773

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.42  E-value=1.2e-12  Score=94.79  Aligned_cols=66  Identities=20%  Similarity=0.305  Sum_probs=56.7

Q ss_pred             EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127        258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR  333 (633)
Q Consensus       258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  333 (633)
                      ++|.|.+.|.|+|.+.|+|||..+..          ....+.|.|.++..+|+|.|+|.|.|..|..+.+..+++.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~----------~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISG----------KHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcc----------cCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            47999999999999999999998741          1134589999999999999999999999988888777764

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.42  E-value=9.1e-13  Score=96.74  Aligned_cols=68  Identities=19%  Similarity=0.312  Sum_probs=57.0

Q ss_pred             EEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127         89 VEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV  157 (633)
Q Consensus        89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V  157 (633)
                      +.|.|.+.|.|.|.++|+|+|.++..... ...+..|.|.++..+|+|.|+|.|.|..|..+....+.+
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~-~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHT-FKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCE-EccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            46899999999999999999999876533 334568999999999999999999999997666555554

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.42  E-value=9.3e-13  Score=100.07  Aligned_cols=74  Identities=22%  Similarity=0.333  Sum_probs=62.3

Q ss_pred             CeEEEEEEEecc--CCCeEEEEeCCccCCC---C-CeEEc----ccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEE
Q psy15127         87 SVVEFVCRVGGD--PLPTILWRRDDGKMPT---G-RAKIL----DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLT  156 (633)
Q Consensus        87 ~~~~L~C~~~~~--p~p~i~W~~~~~~i~~---~-~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~  156 (633)
                      +++.|.|.+.+.  +.+.|.|+|||.+|..   + ++...    .++.|.|.+++..|+|+|+|.|+|..+..++.+.|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            468999999764  4678999999999852   2 33331    346899999999999999999999999999999999


Q ss_pred             EEee
Q psy15127        157 VHLL  160 (633)
Q Consensus       157 V~~~  160 (633)
                      |.+|
T Consensus        81 V~~p   84 (85)
T cd05853          81 VRGP   84 (85)
T ss_pred             EecC
Confidence            9987

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.42  E-value=2.3e-12  Score=99.53  Aligned_cols=80  Identities=21%  Similarity=0.404  Sum_probs=66.0

Q ss_pred             eEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc---cCceEEEcCCCCCCCeEEEEEEEeCCceeE
Q psy15127        249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSALSVAGSTT  325 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  325 (633)
                      .+.+..|+.+.|.|.+.|.|.|.+.|++++..+...    ..++...   ..+.|.|.++..+|+|.|+|.|.|..|..+
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~----~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~   79 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTET----EGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDH   79 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccC----CCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEE
Confidence            356678999999999999999999999999987522    1233332   245799999999999999999999999999


Q ss_pred             EEEEEEE
Q psy15127        326 VRAFLQV  332 (633)
Q Consensus       326 ~~~~l~v  332 (633)
                      .++.|.|
T Consensus        80 ~~~~l~V   86 (86)
T cd05894          80 ASLFVKV   86 (86)
T ss_pred             EEEEEEC
Confidence            8887764

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.42  E-value=1.3e-12  Score=100.75  Aligned_cols=74  Identities=26%  Similarity=0.363  Sum_probs=62.3

Q ss_pred             CeEEEEEEEeccCCC--eEEEEeCCccCCCC----CeEEc----ccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEE
Q psy15127         87 SVVEFVCRVGGDPLP--TILWRRDDGKMPTG----RAKIL----DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLT  156 (633)
Q Consensus        87 ~~~~L~C~~~~~p~p--~i~W~~~~~~i~~~----~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~  156 (633)
                      ++++|.|.+.|.|.|  .+.|+|+|..+...    +....    ..+.|.|.+++..|+|.|+|.|.|..|..++.+.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            468999999999887  58999999887532    22111    246899999999999999999999999999999999


Q ss_pred             EEee
Q psy15127        157 VHLL  160 (633)
Q Consensus       157 V~~~  160 (633)
                      |..+
T Consensus        81 V~~~   84 (85)
T cd05854          81 VRGP   84 (85)
T ss_pred             EECC
Confidence            9976

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.42  E-value=1.5e-12  Score=101.24  Aligned_cols=77  Identities=34%  Similarity=0.551  Sum_probs=65.3

Q ss_pred             eEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeE-----EcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEE
Q psy15127         81 ATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAK-----ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASL  155 (633)
Q Consensus        81 ~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l  155 (633)
                      ..+.+|+.+.|.|.+.|.|.|.++|+|+|..+..+...     ......|.|.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   83 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   83 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence            45788999999999999999999999999988654221     1234579999999999999999999999999988888


Q ss_pred             EE
Q psy15127        156 TV  157 (633)
Q Consensus       156 ~V  157 (633)
                      .|
T Consensus        84 ~v   85 (85)
T cd05857          84 DV   85 (85)
T ss_pred             EC
Confidence            75

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.42  E-value=1.9e-12  Score=97.66  Aligned_cols=75  Identities=25%  Similarity=0.457  Sum_probs=62.2

Q ss_pred             CceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127        255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      |+++.|.|.+.|+|.|+++|+++|..+...+..  .. .....+.|.|.++...|.|.|+|.|.|..|....++.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~--~~-~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTD--PS-RKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCC--ce-EEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            578999999999999999999999987532211  11 1224458999999999999999999999999999999887

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.42  E-value=1.1e-12  Score=99.41  Aligned_cols=78  Identities=21%  Similarity=0.431  Sum_probs=63.1

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCC-eEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceE-EE
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSI-SL  151 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p-~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~-s~  151 (633)
                      |...|.++.+.+|+.+.|.|.+.|.|.| .|.|+|+|.++...  .....+.|.|.++  .|+|.|+|.|.|..|.. +.
T Consensus         1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~   76 (81)
T cd05749           1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSR   76 (81)
T ss_pred             CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--CCCCCCEEEEccc--cCCeEEEEEEEeccCcEEee
Confidence            4567889999999999999999999999 79999999988641  1123468999887  58899999999999974 34


Q ss_pred             EEEE
Q psy15127        152 RASL  155 (633)
Q Consensus       152 ~~~l  155 (633)
                      .+.|
T Consensus        77 ~a~~   80 (81)
T cd05749          77 TGTV   80 (81)
T ss_pred             eEEe
Confidence            5544

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.41  E-value=2e-12  Score=100.50  Aligned_cols=80  Identities=28%  Similarity=0.343  Sum_probs=64.8

Q ss_pred             CceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc----c---CceEEEcCCCCCCCeEEEEEEEeCCceeEEE
Q psy15127        255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT----Q---EGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  327 (633)
Q Consensus       255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~----~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  327 (633)
                      |+.++|.|.+.|.|++.+.|.+++..+..  .  ..++.+.    .   .++|.|.++..+|.|.|+|.|.|..|..+..
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~--~--~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~   76 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINP--E--MSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGI   76 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCC--C--CCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEE
Confidence            68899999999999999999999986631  1  1222221    1   1479999999999999999999999999999


Q ss_pred             EEEEEEecccC
Q psy15127        328 AFLQVREFCVL  338 (633)
Q Consensus       328 ~~l~v~~~~~~  338 (633)
                      +.|.|.+.|..
T Consensus        77 ~~L~V~~~P~~   87 (88)
T cd05735          77 IQLTVQEPPDP   87 (88)
T ss_pred             EEEEEeCCCCC
Confidence            99999875543

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.41  E-value=1.7e-12  Score=97.40  Aligned_cols=73  Identities=22%  Similarity=0.412  Sum_probs=63.7

Q ss_pred             CceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127        255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      |+.+.|.|.+.|.|.|.++|++++..+.     ...+.....++.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~-----~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLT-----NSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcc-----cCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            5789999999999999999999998764     224556667789999999999999999999999999999888764

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.41  E-value=1.6e-12  Score=97.71  Aligned_cols=69  Identities=32%  Similarity=0.594  Sum_probs=58.2

Q ss_pred             EEEEEEEeccCCCeEEEEeCCccCCC--CCeEEccc----ceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127         89 VEFVCRVGGDPLPTILWRRDDGKMPT--GRAKILDD----RSLQIENVGPQDEGLYICDVENLVGSISLRASLTV  157 (633)
Q Consensus        89 ~~L~C~~~~~p~p~i~W~~~~~~i~~--~~~~~~~~----~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V  157 (633)
                      ++|.|.+.|.|.|.|.|+|++..+..  .+.....+    .+|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            47999999999999999999998863  23333322    26999999999999999999999999988888865

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.41  E-value=9.8e-13  Score=97.26  Aligned_cols=67  Identities=34%  Similarity=0.631  Sum_probs=58.7

Q ss_pred             EEEEEEEeccCCCeEEEEeCCccCCCC-CeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEE
Q psy15127         89 VEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASL  155 (633)
Q Consensus        89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l  155 (633)
                      +.|.|.+.|.|.|.++|+|++..+... +.....++.|.|.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            479999999999999999999988654 4455567899999999999999999999999998887766

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.40  E-value=2.8e-12  Score=104.03  Aligned_cols=93  Identities=25%  Similarity=0.328  Sum_probs=73.4

Q ss_pred             cCcCCeeeeCCCceEE-E---cCCeEEEEEEEeccCCCeEEEEeCCccCCCC--CeEEc-------ccceEEEccCC-CC
Q psy15127         68 ALIKPFPISEPSDATV-L---SGSVVEFVCRVGGDPLPTILWRRDDGKMPTG--RAKIL-------DDRSLQIENVG-PQ  133 (633)
Q Consensus        68 v~~~p~~~~~~~~~~~-~---~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~--~~~~~-------~~~~L~i~~v~-~~  133 (633)
                      |.++|.|...|....+ .   .|..++|.|.+.|.|.+.+.|+|+|..+...  ++...       ..+.|+|.++. .+
T Consensus         1 v~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~   80 (109)
T cd05773           1 VRFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAAL   80 (109)
T ss_pred             CccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccC
Confidence            4567888777663322 2   4579999999999999999999999988532  22211       13579999997 59


Q ss_pred             CCeEEEEEEEeCCceEEEEEEEEEEee
Q psy15127        134 DEGLYICDVENLVGSISLRASLTVHLL  160 (633)
Q Consensus       134 d~G~Y~C~~~n~~g~~s~~~~l~V~~~  160 (633)
                      |.|.|+|.|.|..|..+..+.|.|..+
T Consensus        81 D~G~Y~C~A~N~~G~~~~~i~L~~~~~  107 (109)
T cd05773          81 DYALFTCTAHNSLGEDSLDIQLVSTSR  107 (109)
T ss_pred             CCEEEEEEEEeCCccCcEEEEEEecCC
Confidence            999999999999999999999999876

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.40  E-value=1.4e-12  Score=97.84  Aligned_cols=70  Identities=37%  Similarity=0.587  Sum_probs=59.8

Q ss_pred             EEEEEEEeccCCCeEEEEeCCccCC---CCCeEEcccceEEEccCCCCCCeEEEEEEEeCCce-EEEEEEEEEE
Q psy15127         89 VEFVCRVGGDPLPTILWRRDDGKMP---TGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS-ISLRASLTVH  158 (633)
Q Consensus        89 ~~L~C~~~~~p~p~i~W~~~~~~i~---~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~s~~~~l~V~  158 (633)
                      ++|.|.+.|.|.|.|+|+|++.++.   ..+.....++.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|.
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~   74 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR   74 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence            4799999999999999999998875   23555556778999999999999999999999998 5777887763

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.40  E-value=3e-12  Score=100.58  Aligned_cols=82  Identities=27%  Similarity=0.575  Sum_probs=67.9

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCC-eEE-ccc---ceEEEccCCCCCCeEEEEEEEeCCceEE
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR-AKI-LDD---RSLQIENVGPQDEGLYICDVENLVGSIS  150 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~-~~~-~~~---~~L~i~~v~~~d~G~Y~C~~~n~~g~~s  150 (633)
                      ..|..+.+.+|+.+.|.|.+.+.|.|.+.|+|++..+.... +.. ..+   .+|.|.+++.+|+|.|+|.|.|..|...
T Consensus         6 ~~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   85 (92)
T cd05891           6 GLPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGET   85 (92)
T ss_pred             cCCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCcee
Confidence            34677889999999999999999999999999998775432 222 111   3799999999999999999999999988


Q ss_pred             EEEEEEE
Q psy15127        151 LRASLTV  157 (633)
Q Consensus       151 ~~~~l~V  157 (633)
                      ..+.|.|
T Consensus        86 ~~~~v~~   92 (92)
T cd05891          86 VDVTVSV   92 (92)
T ss_pred             eEEEEEC
Confidence            8877764

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.39  E-value=3.3e-12  Score=101.42  Aligned_cols=82  Identities=17%  Similarity=0.220  Sum_probs=66.8

Q ss_pred             eeEEecCCceEEEEEEEee-ecCCeeEEEECCEEEEeccCCccceEEEc-------cCceEEEcCCCCCCCeEEEEEEEe
Q psy15127        248 SLLIWNHPRVNRLSCFAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHVT-------QEGTLRIQGVQKEDAGFFVCSALS  319 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~a~n  319 (633)
                      ..+.+..|+.+.|.|.+.| .|+|.+.|+|||..+...    .......       ..+.|.|..+..+|+|.|+|.|.|
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~----~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N   86 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNK----LTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASN   86 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCC----cceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEEC
Confidence            4567788999999999999 888999999999987521    1111111       135799999999999999999999


Q ss_pred             CCceeEEEEEEEEE
Q psy15127        320 VAGSTTVRAFLQVR  333 (633)
Q Consensus       320 ~~g~~~~~~~l~v~  333 (633)
                      ..|..+.++.|.|.
T Consensus        87 ~~G~~~~t~~L~V~  100 (101)
T cd04975          87 SDASKSLTFELYVN  100 (101)
T ss_pred             CCccEEEEEEEEEE
Confidence            99999999888875

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.39  E-value=6.5e-12  Score=99.88  Aligned_cols=86  Identities=24%  Similarity=0.336  Sum_probs=69.4

Q ss_pred             cccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc-cCceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127        244 RKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT-QEGTLRIQGVQKEDAGFFVCSALSVAG  322 (633)
Q Consensus       244 ~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g  322 (633)
                      ...........|+.+.|.|.+.|.|.|.+.|+++|..+...    ..++... ..+.|.|.++..+|.|.|+|.|.|..|
T Consensus         7 ~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   82 (95)
T cd05730           7 RQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESG----EEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAG   82 (95)
T ss_pred             CCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCC----CCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCC
Confidence            33344456788999999999999999999999999876421    1233333 344799999999999999999999999


Q ss_pred             eeEEEEEEEEE
Q psy15127        323 STTVRAFLQVR  333 (633)
Q Consensus       323 ~~~~~~~l~v~  333 (633)
                      ....++.|.|.
T Consensus        83 ~~~~~~~L~V~   93 (95)
T cd05730          83 EQEAEIHLKVF   93 (95)
T ss_pred             eEEEEEEEEEE
Confidence            99999998886

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.39  E-value=3.2e-12  Score=99.51  Aligned_cols=82  Identities=23%  Similarity=0.408  Sum_probs=66.1

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC-CccCCCC-CeEEcccc---eEEEccCCCCCCeEEEEEEEeCCceE
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD-DGKMPTG-RAKILDDR---SLQIENVGPQDEGLYICDVENLVGSI  149 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~-~~~i~~~-~~~~~~~~---~L~i~~v~~~d~G~Y~C~~~n~~g~~  149 (633)
                      ...|.+..+.+|+++.|.|.+.|.|. .+.|+++ +..+..+ +.....++   .|.|.++..+|+|.|+|.|.|..|..
T Consensus         4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   82 (92)
T cd05866           4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT   82 (92)
T ss_pred             EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence            45677888999999999999999987 8999984 6665443 44444343   89999999999999999999999884


Q ss_pred             -EEEEEEEE
Q psy15127        150 -SLRASLTV  157 (633)
Q Consensus       150 -s~~~~l~V  157 (633)
                       .+.+.|.|
T Consensus        83 ~~~~i~l~~   91 (92)
T cd05866          83 QEATVVLEI   91 (92)
T ss_pred             EEEEEEEEE
Confidence             66666654

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.39  E-value=3.1e-12  Score=99.52  Aligned_cols=79  Identities=24%  Similarity=0.398  Sum_probs=65.2

Q ss_pred             eEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127        249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  328 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  328 (633)
                      .....+|+.+.|.|.+.|+|.|.++|++++..+..     ..++.. .++.|.|.++..+|.|.|+|.|.|..|.....+
T Consensus        10 ~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~-----~~~~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~   83 (88)
T cd05851          10 DTYALKGQNVTLECFALGNPVPVIRWRKILEPMPA-----TAEISM-SGAVLKIFNIQPEDEGTYECEAENIKGKDKHQA   83 (88)
T ss_pred             cEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCC-----CCEEec-CCCEEEECcCChhhCEEEEEEEEcCCCceEEEE
Confidence            34567899999999999999999999999876531     122222 355899999999999999999999999999998


Q ss_pred             EEEEE
Q psy15127        329 FLQVR  333 (633)
Q Consensus       329 ~l~v~  333 (633)
                      .|.|+
T Consensus        84 ~l~V~   88 (88)
T cd05851          84 RVYVQ   88 (88)
T ss_pred             EEEEC
Confidence            88763

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.38  E-value=4.1e-12  Score=99.68  Aligned_cols=81  Identities=40%  Similarity=0.810  Sum_probs=67.6

Q ss_pred             CceEEEEEEEeeecCCeeEEEECCEEEEecc---CCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy15127        255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFP---GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  331 (633)
Q Consensus       255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  331 (633)
                      |+.+.|.|.+.|.|.|.+.|+++|..+....   .....++.+..++.|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE   80 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence            5789999999999999999999987543211   1123566666678999999999999999999999999999999999


Q ss_pred             EEec
Q psy15127        332 VREF  335 (633)
Q Consensus       332 v~~~  335 (633)
                      |.+.
T Consensus        81 V~~~   84 (90)
T cd05726          81 VTDV   84 (90)
T ss_pred             Eeec
Confidence            9864

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.38  E-value=3.2e-12  Score=96.25  Aligned_cols=70  Identities=29%  Similarity=0.486  Sum_probs=59.3

Q ss_pred             eEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEcc---cceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127         88 VVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILD---DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV  157 (633)
Q Consensus        88 ~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V  157 (633)
                      .+.|.|.+.|.|.|.+.|+|+|..+..+ +.....   ...|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            3789999999999999999999988544 333222   357999999999999999999999999988888765

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.38  E-value=2.5e-12  Score=95.09  Aligned_cols=68  Identities=34%  Similarity=0.674  Sum_probs=58.9

Q ss_pred             EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy15127        258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL  330 (633)
Q Consensus       258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  330 (633)
                      +.|.|.+.|.|.|.+.|+|+|..+.     ...+..+..++.|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~-----~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVT-----ESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECC-----CCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            4799999999999999999998764     2245556667899999999999999999999999999888765

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.37  E-value=2.7e-12  Score=99.50  Aligned_cols=74  Identities=23%  Similarity=0.356  Sum_probs=62.0

Q ss_pred             CeEEEEEEEeccCCC--eEEEEeCCccCCCCC----e--E--EcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEE
Q psy15127         87 SVVEFVCRVGGDPLP--TILWRRDDGKMPTGR----A--K--ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLT  156 (633)
Q Consensus        87 ~~~~L~C~~~~~p~p--~i~W~~~~~~i~~~~----~--~--~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~  156 (633)
                      +++.|.|.+.+.|.|  .+.|+++|..+....    .  .  ....+.|.|.+++.+|+|.|+|.|.|..|..++.+.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            468999999999887  579999999875321    1  1  12357899999999999999999999999999999999


Q ss_pred             EEee
Q psy15127        157 VHLL  160 (633)
Q Consensus       157 V~~~  160 (633)
                      |..+
T Consensus        81 V~~p   84 (85)
T cd04970          81 VRGP   84 (85)
T ss_pred             EECC
Confidence            9986

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.37  E-value=2.9e-12  Score=99.04  Aligned_cols=77  Identities=29%  Similarity=0.548  Sum_probs=63.9

Q ss_pred             eEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEE--cccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127         81 ATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKI--LDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV  157 (633)
Q Consensus        81 ~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V  157 (633)
                      +.+..|+.++|.|.+.+.|.|.+.|+|++..+.......  .....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   82 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV   82 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence            456679999999999999999999999998875432222  22368999999999999999999999999888877764

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.37  E-value=4.1e-12  Score=96.14  Aligned_cols=69  Identities=33%  Similarity=0.740  Sum_probs=55.6

Q ss_pred             EEEEEEEeccCCCeEEEEeCCccCCCCC--eEEc-ccceEEEccCCCCCCeEEEEEEEeCCceEE--EEEEEEE
Q psy15127         89 VEFVCRVGGDPLPTILWRRDDGKMPTGR--AKIL-DDRSLQIENVGPQDEGLYICDVENLVGSIS--LRASLTV  157 (633)
Q Consensus        89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~~--~~~~-~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s--~~~~l~V  157 (633)
                      ++|.|.+.|.|.|.++|+|+|.++....  .... ..+.|.|.+++.+|+|.|+|.|.|..|...  ..+.|.|
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v   74 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI   74 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence            5799999999999999999999886542  2222 346899999999999999999999999864  4455544

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.37  E-value=3.8e-12  Score=93.45  Aligned_cols=69  Identities=20%  Similarity=0.285  Sum_probs=57.1

Q ss_pred             EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127        258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR  333 (633)
Q Consensus       258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  333 (633)
                      +.|.|.+.|.|.|.+.|+|+|.++...     .  .......|.|.++..+|+|.|+|.|.|..|..+....+.+.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~-----~--~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLN-----H--TFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCC-----C--EEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence            368999999999999999999987421     1  22345589999999999999999999999988877777654

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.37  E-value=6.3e-12  Score=99.00  Aligned_cols=83  Identities=23%  Similarity=0.373  Sum_probs=66.2

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc--cCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT--QEGTLRIQGVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                      +..+.+.+|+++.|.|.+.|.|.|.+.|+|+|..+...  .. .++...  ...+|.|.++..+|+|.|+|.|.|..|..
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~--~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   84 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALS--DH-YNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGE   84 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccC--CC-EEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcc
Confidence            44567788999999999999999999999999887421  11 122222  22379999999999999999999999999


Q ss_pred             EEEEEEEE
Q psy15127        325 TVRAFLQV  332 (633)
Q Consensus       325 ~~~~~l~v  332 (633)
                      +..+.|.|
T Consensus        85 ~~~~~v~v   92 (92)
T cd05737          85 TVDVTVSV   92 (92)
T ss_pred             eEEEEEeC
Confidence            88877754

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.36  E-value=2.9e-12  Score=95.80  Aligned_cols=66  Identities=21%  Similarity=0.328  Sum_probs=55.4

Q ss_pred             EEEEEeccCCCeEEEEeCCccCCCCCeEE-----c----ccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEE
Q psy15127         91 FVCRVGGDPLPTILWRRDDGKMPTGRAKI-----L----DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLT  156 (633)
Q Consensus        91 L~C~~~~~p~p~i~W~~~~~~i~~~~~~~-----~----~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~  156 (633)
                      |.|.+.|+|.|.|+|+|+|.+|..+++..     .    ..+.|.|.++..+|+|.|+|.|+|..|..++.+.+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            78999999999999999999997654321     1    135799999999999999999999999887777654

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.36  E-value=5.8e-12  Score=95.58  Aligned_cols=75  Identities=32%  Similarity=0.569  Sum_probs=62.7

Q ss_pred             CceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127        255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      |+.+.|.|.+.|.|.|.+.|+++|..+.....   ........+.|.|.++..+|.|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~---~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPP---DPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCC---cceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            57899999999999999999999987742211   1123345678999999999999999999999999999988876

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.36  E-value=3e-12  Score=100.41  Aligned_cols=79  Identities=29%  Similarity=0.403  Sum_probs=65.3

Q ss_pred             CceEEEcCCeEEEEEEEec-----cCCCeEEEEeCCccCCC----CCeEEcccceEEEccCCCCCCeEEEEEEEeCCceE
Q psy15127         79 SDATVLSGSVVEFVCRVGG-----DPLPTILWRRDDGKMPT----GRAKILDDRSLQIENVGPQDEGLYICDVENLVGSI  149 (633)
Q Consensus        79 ~~~~~~~G~~~~L~C~~~~-----~p~p~i~W~~~~~~i~~----~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~  149 (633)
                      .+..+.+|+.+.|.|.+.+     .|.+.|.|||++..+..    ..+....++.|.|.+++.+|+|.|+|.+.|..|..
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~   86 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCM   86 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccE
Confidence            4667889999999999988     68889999999876532    22223346789999999999999999999999998


Q ss_pred             EEEEEEEE
Q psy15127        150 SLRASLTV  157 (633)
Q Consensus       150 s~~~~l~V  157 (633)
                      +..+.|.|
T Consensus        87 ~~~~~L~v   94 (94)
T cd05756          87 KVSISLTV   94 (94)
T ss_pred             EEEEEEEC
Confidence            88888765

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>KOG3515|consensus

Probab=99.36  E-value=6.3e-11  Score=123.10  Aligned_cols=199  Identities=18%  Similarity=0.199  Sum_probs=137.3

Q ss_pred             EEEcCCeEEEEEEEeccC-CCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCce-EEEEEEEEEEe
Q psy15127         82 TVLSGSVVEFVCRVGGDP-LPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS-ISLRASLTVHL  159 (633)
Q Consensus        82 ~~~~G~~~~L~C~~~~~p-~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~s~~~~l~V~~  159 (633)
                      .+..|+.|.|.|.+.++| .+++.|++.+..+. +++....+.+|...+..++.-+.|.|++.|..+. ......+.|..
T Consensus        18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~   96 (741)
T KOG3515|consen   18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH-GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDY   96 (741)
T ss_pred             hhccCCcceeeeecCCCCCCcceEEEecCcccc-cccccccCCceeeecchhhhhhhhhhhhcccccCceecceeecccc
Confidence            789999999999998764 55899999988776 6666677889999999999999999999998666 56777788888


Q ss_pred             eccccccCCCceEEecCCcEEEEE-eCCCCCCCCeEEEEECCEEeccCCCeeEEec----------cceeee----EEEe
Q psy15127        160 LRDDFRAEPKDTRVASGETALLEC-GPPKGQPEPTLHWKKNGQFIDLESSKSLDLS----------RRTLGW----LRVR  224 (633)
Q Consensus       160 ~~p~~~~~~~~~~~~~g~~~~l~C-~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~----------~~~~~~----~~~~  224 (633)
                      + |.-...........+..+.+.| ....+.|.+.+.|..+...............          ...+.+    ....
T Consensus        97 ~-pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~  175 (741)
T KOG3515|consen   97 P-PACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADN  175 (741)
T ss_pred             C-ccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCC
Confidence            7 5443344444566788999999 4456788889999998776554332111111          111111    1224


Q ss_pred             eeEEEEeecCCCCC---C---cccc---------cccceeEEecCCceEEEEEEEe-eecCCeeEEEECCEEEE
Q psy15127        225 PLYWNVARPRANLN---P---RYIG---------RKMASLLIWNHPRVNRLSCFAE-GSPLPSVFWTQEGSQVL  282 (633)
Q Consensus       225 g~y~C~a~~~~~~~---p---~~~~---------~~~~~~~~~~~g~~~~l~C~~~-g~p~~~v~W~~~g~~~~  282 (633)
                      |+|+|.|.+.....   .   .+..         ..........+|+.+.|.|.+. |+|.++++|+++.....
T Consensus       176 g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~  249 (741)
T KOG3515|consen  176 GNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQS  249 (741)
T ss_pred             ceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccch
Confidence            79999998853211   0   0000         0011112345678999999875 56778999999887654

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.36  E-value=3.4e-12  Score=95.44  Aligned_cols=69  Identities=35%  Similarity=0.636  Sum_probs=59.1

Q ss_pred             EEEEEEEeccCCCeEEEEeCCccCCCCCeEE-cccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127         89 VEFVCRVGGDPLPTILWRRDDGKMPTGRAKI-LDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV  157 (633)
Q Consensus        89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V  157 (633)
                      ++|.|.+.|.|.|.+.|+|++..+..++... ...+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            4799999999999999999998776544332 23568999999999999999999999999888888876

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.35  E-value=9e-12  Score=96.03  Aligned_cols=79  Identities=27%  Similarity=0.395  Sum_probs=62.6

Q ss_pred             ceEEEEEEEeeecCC--eeEEEECCEEEEeccC-CccceEEE-ccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy15127        256 RVNRLSCFAEGSPLP--SVFWTQEGSQVLMFPG-NAYGHLHV-TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  331 (633)
Q Consensus       256 ~~~~l~C~~~g~p~~--~v~W~~~g~~~~~~~~-~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  331 (633)
                      +.++|.|.+.|+|.|  .+.|+++|..+..... ..+.+... ...++|.|.+++..|+|.|+|.|.|..|..++++.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            468999999999987  6899999988743221 11112222 2346899999999999999999999999999999999


Q ss_pred             EEe
Q psy15127        332 VRE  334 (633)
Q Consensus       332 v~~  334 (633)
                      |..
T Consensus        81 V~~   83 (85)
T cd05854          81 VRG   83 (85)
T ss_pred             EEC
Confidence            985

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.35  E-value=4.7e-12  Score=93.02  Aligned_cols=69  Identities=20%  Similarity=0.294  Sum_probs=55.7

Q ss_pred             EEEEEEEeccCCCeEEEEeCCccCCCC-CeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127         89 VEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV  157 (633)
Q Consensus        89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V  157 (633)
                      +.|.|.+.|.|.|.+.|+|++.++... ......+.+|.|.+++.+|+|.|+|.|.|..........++.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~   70 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL   70 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence            469999999999999999999998654 333445568999999999999999999998666555544443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.35  E-value=5.3e-12  Score=93.86  Aligned_cols=70  Identities=29%  Similarity=0.481  Sum_probs=58.2

Q ss_pred             EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127        258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      +.|.|.+.|.|.|.+.|++++..+..     ........++.|.|.++..+|.|.|+|.|.|..|..+.++.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~-----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSP-----NRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCC-----CceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            46999999999999999999876531     11223345679999999999999999999999999998888876

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.34  E-value=6.7e-12  Score=94.54  Aligned_cols=72  Identities=26%  Similarity=0.531  Sum_probs=61.0

Q ss_pred             CCeEEEEEEEeccCCCeEEEEe-CCccCCCC-CeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127         86 GSVVEFVCRVGGDPLPTILWRR-DDGKMPTG-RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV  157 (633)
Q Consensus        86 G~~~~L~C~~~~~p~p~i~W~~-~~~~i~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V  157 (633)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+... +.....+++|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            7899999999999999999997 56665443 344456789999999999999999999999999888887765

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.34  E-value=1e-11  Score=97.51  Aligned_cols=83  Identities=25%  Similarity=0.478  Sum_probs=64.6

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEe-CCccCCC-CCeEEccc----ceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRR-DDGKMPT-GRAKILDD----RSLQIENVGPQDEGLYICDVENLVG  147 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~-~~~~i~~-~~~~~~~~----~~L~i~~v~~~d~G~Y~C~~~n~~g  147 (633)
                      +...|....+..|+++.|.|.+.|.| +.++|++ ++..+.. ++.....+    ++|+|.+++.+|+|.|+|.|.|..|
T Consensus         3 v~v~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g   81 (92)
T cd04977           3 VDIVPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKG   81 (92)
T ss_pred             EEEecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence            44667888999999999999999987 4999998 5665543 34333322    4799999999999999999999875


Q ss_pred             e-EEEEEEEEE
Q psy15127        148 S-ISLRASLTV  157 (633)
Q Consensus       148 ~-~s~~~~l~V  157 (633)
                      . .++++.|.|
T Consensus        82 ~~~~~sv~l~~   92 (92)
T cd04977          82 TESEATVNLKI   92 (92)
T ss_pred             CcceeEEEEEC
Confidence            5 566666653

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.34  E-value=8.8e-12  Score=93.62  Aligned_cols=71  Identities=32%  Similarity=0.536  Sum_probs=57.6

Q ss_pred             EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccC----ceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127        258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE----GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      ++|.|.+.|.|.|.+.|+|++..+...    ..++.+..+    .+|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~----~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYN----TDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCC----CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            479999999999999999999877421    123333222    26999999999999999999999999999888764

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.34  E-value=6.1e-12  Score=95.60  Aligned_cols=67  Identities=22%  Similarity=0.240  Sum_probs=55.5

Q ss_pred             EEEEEEeccCCCeEEEEeCCccCCCCCeEE-----------cccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEE
Q psy15127         90 EFVCRVGGDPLPTILWRRDDGKMPTGRAKI-----------LDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLT  156 (633)
Q Consensus        90 ~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~-----------~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~  156 (633)
                      -|.|.+.|.|.|.|+|+|+|..+..+....           ...+.|.|.+++.+|+|.|+|.|.|..|..++.+.|.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            378999999999999999999886543211           1134799999999999999999999999988877765

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.33  E-value=1.3e-11  Score=96.81  Aligned_cols=82  Identities=23%  Similarity=0.332  Sum_probs=64.8

Q ss_pred             eEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127        249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  328 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  328 (633)
                      ...+..|+.+.|.|.+.|.|.|.+.|+++|..+...  .............|.|.++..+|.|.|+|.|.|..|....++
T Consensus         9 ~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~--~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~   86 (90)
T cd04972           9 ATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQT--RTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSV   86 (90)
T ss_pred             CEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCC--ccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEE
Confidence            344788999999999999999999999999876421  110111122345899999999999999999999999999888


Q ss_pred             EEEE
Q psy15127        329 FLQV  332 (633)
Q Consensus       329 ~l~v  332 (633)
                      .|.|
T Consensus        87 ~L~v   90 (90)
T cd04972          87 QVTV   90 (90)
T ss_pred             EEeC
Confidence            8764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.33  E-value=3.6e-12  Score=95.96  Aligned_cols=77  Identities=23%  Similarity=0.382  Sum_probs=62.6

Q ss_pred             CeeeeCCCceEEEcCCeEEEEEEEeccCCC-eEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEE
Q psy15127         72 PFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSIS  150 (633)
Q Consensus        72 p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p-~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s  150 (633)
                      |.+...|+...+.+|++++|.|.+.+.|.+ .+.|+|||..+..      ....|.|.++ .+|+|.|+|.|.|.  ..+
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~------~~~~l~i~~~-~~dsG~Y~C~a~~~--~~S   71 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET------TTNSYRIRAA-NNDSGEYRCQTQGS--SLS   71 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec------cCCeEEEeec-ccCCEEeEEECCCC--cCC
Confidence            577888999999999999999999887754 6999999987732      3468999999 99999999999875  344


Q ss_pred             EEEEEEE
Q psy15127        151 LRASLTV  157 (633)
Q Consensus       151 ~~~~l~V  157 (633)
                      ..+.|+|
T Consensus        72 ~~v~l~V   78 (78)
T cd05752          72 DPVHLEV   78 (78)
T ss_pred             CCEEEeC
Confidence            5555543

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.33  E-value=1.1e-11  Score=91.92  Aligned_cols=70  Identities=20%  Similarity=0.290  Sum_probs=58.4

Q ss_pred             EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127        258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR  333 (633)
Q Consensus       258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  333 (633)
                      +.|.|.+.|.|+|.+.|+|+|..+...     .+ ......+|.|.++..+|+|.|+|.|.|..|..+.+..+.+.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~-----~~-~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEK-----NR-TKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCC-----CE-EEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            469999999999999999999887421     22 23355789999999999999999999999998888777764

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.33  E-value=8.5e-12  Score=94.81  Aligned_cols=72  Identities=33%  Similarity=0.573  Sum_probs=59.1

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEcc---cceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127         86 GSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILD---DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV  157 (633)
Q Consensus        86 G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V  157 (633)
                      |+++.|.|.+.|.|.|.++|++++..+... +.....   .+.|.|.+++.+|+|.|+|.|.|..|.....+.+.+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~   76 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL   76 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence            789999999999999999999998887654 333322   358999999999999999999999998765555443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.33  E-value=1.4e-11  Score=98.37  Aligned_cols=84  Identities=24%  Similarity=0.381  Sum_probs=67.8

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCC-eEEEEeCCccCCC---CCeEEccc-------ceEEEccCCC-CCCeEE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPT---GRAKILDD-------RSLQIENVGP-QDEGLY  138 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p-~i~W~~~~~~i~~---~~~~~~~~-------~~L~i~~v~~-~d~G~Y  138 (633)
                      ||.+ ..+....+.+|+.+.|.|.+.|.|.| .|.|++++..+..   .++.+...       +.|.|.++.. +|.|.|
T Consensus         2 pp~i-~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y   80 (98)
T cd05758           2 PPII-TSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY   80 (98)
T ss_pred             CCeE-cCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence            4555 45667789999999999999999999 6999999988753   34444322       4799999999 559999


Q ss_pred             EEEEEeCCceEEEEEEE
Q psy15127        139 ICDVENLVGSISLRASL  155 (633)
Q Consensus       139 ~C~~~n~~g~~s~~~~l  155 (633)
                      +|.|.|..|.....+.|
T Consensus        81 ~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          81 NCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEcCCCcccEEEEe
Confidence            99999999998777765

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.33  E-value=1.2e-11  Score=93.06  Aligned_cols=71  Identities=23%  Similarity=0.480  Sum_probs=58.3

Q ss_pred             eEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEE---ccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127        257 VNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV---TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       257 ~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      .+.|.|.+.|.|.|.+.|+++|..+..     ..+..+   .....|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~-----~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKL-----SGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCC-----CCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            368999999999999999999988731     122222   23457999999999999999999999999998888764

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.32  E-value=6.9e-12  Score=92.88  Aligned_cols=69  Identities=28%  Similarity=0.601  Sum_probs=58.3

Q ss_pred             EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127        258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      ++|.|.+.|.|+|.+.|+|++..+.      ..+.....++.|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELP------KGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCC------CCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            4799999999999999999987552      13344456778999999999999999999999999988887764

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.32  E-value=1.1e-11  Score=93.61  Aligned_cols=69  Identities=38%  Similarity=0.738  Sum_probs=56.9

Q ss_pred             EEEEEEEeccCCCeEEEEeCCccC-CC---CCeEEc-ccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127         89 VEFVCRVGGDPLPTILWRRDDGKM-PT---GRAKIL-DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV  157 (633)
Q Consensus        89 ~~L~C~~~~~p~p~i~W~~~~~~i-~~---~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V  157 (633)
                      ++|.|.+.|.|.|.++|+|++... +.   .+.... .++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            479999999999999999998642 22   222222 3568999999999999999999999999999888887

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.31  E-value=1.8e-11  Score=97.52  Aligned_cols=81  Identities=26%  Similarity=0.479  Sum_probs=62.4

Q ss_pred             ecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEcc---CceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127        252 WNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ---EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  328 (633)
Q Consensus       252 ~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  328 (633)
                      ...|+.++|.|.+.|.|.|.++|++++..+.........++....   .+.|.|.++..+|.|.|+|.|.|..|..+.++
T Consensus        14 ~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~   93 (97)
T cd05869          14 MELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSM   93 (97)
T ss_pred             EEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEE
Confidence            344799999999999999999999998765321111112232222   24799999999999999999999999999988


Q ss_pred             EEEE
Q psy15127        329 FLQV  332 (633)
Q Consensus       329 ~l~v  332 (633)
                      .|.|
T Consensus        94 ~l~v   97 (97)
T cd05869          94 YLEV   97 (97)
T ss_pred             EEEC
Confidence            8764

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.31  E-value=2.6e-11  Score=94.72  Aligned_cols=79  Identities=24%  Similarity=0.421  Sum_probs=64.9

Q ss_pred             eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEE
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  327 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  327 (633)
                      ......+|+.+.|.|.+.|.|.|.+.|++++..+..  .   ... ...++.|.|.+++.+|+|.|+|.|.|..|....+
T Consensus         9 ~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~--~---~~~-~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   82 (88)
T cd04968           9 KDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPS--S---AEI-SMSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQ   82 (88)
T ss_pred             CceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCC--c---cEE-EEeCCEEEECCCCcccCEEEEEEEEECCCcEEEE
Confidence            334566899999999999999999999998875421  1   111 1356799999999999999999999999999998


Q ss_pred             EEEEE
Q psy15127        328 AFLQV  332 (633)
Q Consensus       328 ~~l~v  332 (633)
                      +.|.|
T Consensus        83 ~~l~V   87 (88)
T cd04968          83 GRIYV   87 (88)
T ss_pred             EEEEE
Confidence            88876

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.31  E-value=2.2e-11  Score=96.90  Aligned_cols=81  Identities=17%  Similarity=0.276  Sum_probs=65.5

Q ss_pred             eEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEE--------ccCceEEEcCCCCCCCeEEEEEEEeC
Q psy15127        249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV--------TQEGTLRIQGVQKEDAGFFVCSALSV  320 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~a~n~  320 (633)
                      ......++.+.|.|.+.|+|+|.+.|+|||.++....    .....        ...++|.|.++..+|+|.|+|.|.|.
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~----~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~   87 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENL----TEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNE   87 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCc----ceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcC
Confidence            4556677999999999999999999999999875211    11111        12358999999999999999999999


Q ss_pred             CceeEEEEEEEEE
Q psy15127        321 AGSTTVRAFLQVR  333 (633)
Q Consensus       321 ~g~~~~~~~l~v~  333 (633)
                      .|..+.++.|.|.
T Consensus        88 ~g~~~~t~~l~V~  100 (101)
T cd05859          88 DAVKSYTFALQIQ  100 (101)
T ss_pred             CceEEEEEEEEEE
Confidence            9999999888875

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.31  E-value=1.5e-11  Score=93.53  Aligned_cols=77  Identities=22%  Similarity=0.287  Sum_probs=62.1

Q ss_pred             ceEEEEEEEeeec--CCeeEEEECCEEEEeccCCccceEEE----ccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEE
Q psy15127        256 RVNRLSCFAEGSP--LPSVFWTQEGSQVLMFPGNAYGHLHV----TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF  329 (633)
Q Consensus       256 ~~~~l~C~~~g~p--~~~v~W~~~g~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  329 (633)
                      +++.|.|.+.+.|  ++.+.|++||..+....  ...++..    ...+.|.|.+++..|+|.|+|.|.|..+..+.++.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~--~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~   78 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQK--DGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAAD   78 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccC--CCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEE
Confidence            4688999998754  67999999999885311  1123333    24568999999999999999999999999999999


Q ss_pred             EEEEe
Q psy15127        330 LQVRE  334 (633)
Q Consensus       330 l~v~~  334 (633)
                      |.|..
T Consensus        79 L~V~~   83 (85)
T cd05853          79 LIVRG   83 (85)
T ss_pred             EEEec
Confidence            99985

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.30  E-value=1.8e-11  Score=91.79  Aligned_cols=72  Identities=28%  Similarity=0.490  Sum_probs=59.5

Q ss_pred             EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCcee-EEEEEEEE
Q psy15127        258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST-TVRAFLQV  332 (633)
Q Consensus       258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v  332 (633)
                      ++|.|.+.|.|.|.+.|++++..+...   ...++....++.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~---~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTT---SNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccC---CCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            479999999999999999999876421   2245566667799999999999999999999999985 67777765

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.30  E-value=1.4e-11  Score=96.99  Aligned_cols=80  Identities=16%  Similarity=0.294  Sum_probs=62.4

Q ss_pred             eEEecCCceEEEEEEEeeecC-CeeEEEE-CCEEEEeccCCccceEEEcc----CceEEEcCCCCCCCeEEEEEEEeCC-
Q psy15127        249 LLIWNHPRVNRLSCFAEGSPL-PSVFWTQ-EGSQVLMFPGNAYGHLHVTQ----EGTLRIQGVQKEDAGFFVCSALSVA-  321 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g~p~-~~v~W~~-~g~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~-  321 (633)
                      ...+..|++++|.|.+.|.|. |.+.|++ ++..+..    ...++....    .++|.|.++..+|+|.|+|.|.|.. 
T Consensus         9 ~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~----~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~   84 (96)
T cd05865           9 QGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTP----NQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDE   84 (96)
T ss_pred             ccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccc----cCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCC
Confidence            345778999999999999995 7999998 7765531    112332221    2589999999999999999999996 


Q ss_pred             ceeEEEEEEEE
Q psy15127        322 GSTTVRAFLQV  332 (633)
Q Consensus       322 g~~~~~~~l~v  332 (633)
                      |..+.++.|.|
T Consensus        85 g~~~~s~~l~v   95 (96)
T cd05865          85 GESEATVNVKI   95 (96)
T ss_pred             CcEEEEEEEEE
Confidence            88888888776

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.30  E-value=1.9e-11  Score=97.64  Aligned_cols=84  Identities=27%  Similarity=0.455  Sum_probs=63.9

Q ss_pred             eEEecCCceEEEEEEEeeecCCeeEEEEC--CEEEEeccCCccceEEEc---cCceEEEcCCCCCCCeEEEEEEEeCCce
Q psy15127        249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQE--GSQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSALSVAGS  323 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~--g~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  323 (633)
                      ...+.+|++++|.|.+.|.|.|.+.|+++  +..+.........++.+.   ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus        10 ~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   89 (98)
T cd05870          10 NETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGG   89 (98)
T ss_pred             cEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCc
Confidence            45677899999999999999999999994  433321111112344443   2357999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy15127        324 TTVRAFLQV  332 (633)
Q Consensus       324 ~~~~~~l~v  332 (633)
                      ...++.|.|
T Consensus        90 ~~~~~~l~~   98 (98)
T cd05870          90 HQKSMYLDI   98 (98)
T ss_pred             ceeEEEEeC
Confidence            988887764

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.30  E-value=2.2e-11  Score=94.23  Aligned_cols=78  Identities=27%  Similarity=0.431  Sum_probs=65.7

Q ss_pred             eEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127        249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  328 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  328 (633)
                      ...+..|+.+.|.|.+.|.|.|.+.|+++|..+.     ...++.. .++.|.|.++..+|.|.|+|.|.|..|....++
T Consensus         8 ~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~-----~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   81 (85)
T cd05728           8 DTEADIGSSLRWECKASGNPRPAYRWLKNGQPLA-----SENRIEV-EAGDLRITKLSLSDSGMYQCVAENKHGTIYASA   81 (85)
T ss_pred             ccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECC-----CCCeEEE-eCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEE
Confidence            3566788999999999999999999999999764     1223333 456899999999999999999999999999888


Q ss_pred             EEEE
Q psy15127        329 FLQV  332 (633)
Q Consensus       329 ~l~v  332 (633)
                      .|.|
T Consensus        82 ~l~V   85 (85)
T cd05728          82 ELAV   85 (85)
T ss_pred             EEEC
Confidence            8764

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.30  E-value=1e-11  Score=97.26  Aligned_cols=73  Identities=36%  Similarity=0.510  Sum_probs=57.8

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCC----ccCC-CCC-e-EE----------cccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         86 GSVVEFVCRVGGDPLPTILWRRDD----GKMP-TGR-A-KI----------LDDRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        86 G~~~~L~C~~~~~p~p~i~W~~~~----~~i~-~~~-~-~~----------~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      |+.++|.|.+.|.|.|.|+|+|++    ..+. .+. . ..          .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            688999999999999999999964    2221 111 0 11          12357999999999999999999999999


Q ss_pred             EEEEEEEEEE
Q psy15127        149 ISLRASLTVH  158 (633)
Q Consensus       149 ~s~~~~l~V~  158 (633)
                      .++.+.|.|.
T Consensus        81 ~~~sa~L~V~   90 (90)
T cd04974          81 SHHSAWLTVL   90 (90)
T ss_pred             ccCCEEEEeC
Confidence            9989988874

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.29  E-value=3.3e-11  Score=94.77  Aligned_cols=79  Identities=28%  Similarity=0.478  Sum_probs=63.9

Q ss_pred             CeeeeCCCceEEEcC---CeEEEEEEEeccCCCeEEEEeCCccCCC--CCeEEcccceEEEccCCC-CCCeEEEEEEEeC
Q psy15127         72 PFPISEPSDATVLSG---SVVEFVCRVGGDPLPTILWRRDDGKMPT--GRAKILDDRSLQIENVGP-QDEGLYICDVENL  145 (633)
Q Consensus        72 p~~~~~~~~~~~~~G---~~~~L~C~~~~~p~p~i~W~~~~~~i~~--~~~~~~~~~~L~i~~v~~-~d~G~Y~C~~~n~  145 (633)
                      |.|+.+|.+..+.+|   +.+.|.|.+.|.|.|.++|+|++..+..  .......++.|.|.++.. +|+|.|+|.|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~   81 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNI   81 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcC
Confidence            778888888765544   6799999999999999999999998842  223334567899998874 8999999999999


Q ss_pred             CceEE
Q psy15127        146 VGSIS  150 (633)
Q Consensus       146 ~g~~s  150 (633)
                      .|...
T Consensus        82 ~G~~~   86 (91)
T cd04967          82 VGTVL   86 (91)
T ss_pred             CCEEE
Confidence            99743

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.29  E-value=2.7e-11  Score=94.14  Aligned_cols=81  Identities=23%  Similarity=0.380  Sum_probs=64.3

Q ss_pred             EEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEE-ccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127        250 LIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV-TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  328 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  328 (633)
                      ..+..|+.+.|.|.+.|.|.|.+.|+++|..+...  ........ .....|.|.++..+|+|.|+|.|.|..|....++
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~--~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   81 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQE--HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY   81 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCC--CceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEE
Confidence            34667899999999999999999999999887421  11111122 2345799999999999999999999999999988


Q ss_pred             EEEE
Q psy15127        329 FLQV  332 (633)
Q Consensus       329 ~l~v  332 (633)
                      .|.|
T Consensus        82 ~l~v   85 (85)
T cd05857          82 HLDV   85 (85)
T ss_pred             EEEC
Confidence            8764

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.29  E-value=2.7e-11  Score=93.91  Aligned_cols=79  Identities=27%  Similarity=0.378  Sum_probs=62.2

Q ss_pred             ceEEEEEEEeeecCC--eeEEEECCEEEEeccC-Cccce-EEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy15127        256 RVNRLSCFAEGSPLP--SVFWTQEGSQVLMFPG-NAYGH-LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  331 (633)
Q Consensus       256 ~~~~l~C~~~g~p~~--~v~W~~~g~~~~~~~~-~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  331 (633)
                      +.+.|.|.+.|.|.|  .+.|+++|..+..... ....+ ......+.|.|.+++..|+|.|+|.|.|..|..+.++.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            468999999999987  6799999998753211 11111 1223467899999999999999999999999999999999


Q ss_pred             EEe
Q psy15127        332 VRE  334 (633)
Q Consensus       332 v~~  334 (633)
                      |..
T Consensus        81 V~~   83 (85)
T cd04970          81 VRG   83 (85)
T ss_pred             EEC
Confidence            985

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.29  E-value=3.2e-11  Score=88.65  Aligned_cols=68  Identities=22%  Similarity=0.463  Sum_probs=54.6

Q ss_pred             CceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy15127        255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL  330 (633)
Q Consensus       255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  330 (633)
                      |+.++|.|.+.|.|.|.|.|++++..+..     ..+.. .....|.|.++.  |+|.|+|.|.|..|....++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~-----~~~~~-~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTK-----EDEMP-VGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCC-----cccee-cCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            57899999999999999999999987631     11222 234478999874  7899999999999998888765

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.28  E-value=3.3e-11  Score=91.16  Aligned_cols=71  Identities=25%  Similarity=0.524  Sum_probs=55.0

Q ss_pred             EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEE-ccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127        258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV-TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      ++|.|.+.|.|.|.+.|+|+|..+...    ..+... ...+.|.|.++..+|+|.|+|.|.|..|....+..+.+
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~----~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l   72 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDG----QGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL   72 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCC----CccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence            479999999999999999999876421    112222 23468999999999999999999999998754444443

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.28  E-value=5e-11  Score=93.94  Aligned_cols=78  Identities=26%  Similarity=0.425  Sum_probs=64.1

Q ss_pred             eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc---cCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                      ....+..|+.+.|.|.+.|+|.|.+.|+++|..+..     ..+..+.   ..+.|.|.++..+|+|.|+|.|.|..|..
T Consensus        11 ~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~-----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~   85 (92)
T cd05747          11 RSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVS-----SQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQ   85 (92)
T ss_pred             ccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCC-----CCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCE
Confidence            456788899999999999999999999999987641     1222222   24589999999999999999999999998


Q ss_pred             EEEEEE
Q psy15127        325 TVRAFL  330 (633)
Q Consensus       325 ~~~~~l  330 (633)
                      +.++.|
T Consensus        86 ~~~~~l   91 (92)
T cd05747          86 EAQFTL   91 (92)
T ss_pred             eEEEEe
Confidence            887765

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.27  E-value=3.8e-11  Score=91.62  Aligned_cols=68  Identities=24%  Similarity=0.384  Sum_probs=58.2

Q ss_pred             CCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEcccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      .|.+..+.+|+++.|.|.+.+ +.+.|.|+++|.++..+ .+....++.|.|.+++.+|+|.|+|.+.+.
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEec
Confidence            467888999999999999864 67899999999998654 344556778999999999999999999865

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.27  E-value=2.7e-11  Score=93.26  Aligned_cols=72  Identities=33%  Similarity=0.611  Sum_probs=58.3

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCc---cC--CC----CCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEE
Q psy15127         86 GSVVEFVCRVGGDPLPTILWRRDDG---KM--PT----GRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLT  156 (633)
Q Consensus        86 G~~~~L~C~~~~~p~p~i~W~~~~~---~i--~~----~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~  156 (633)
                      |+.++|.|.+.|.|.|.++|+|++.   .+  ..    .+......+.|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            7899999999999999999999742   11  11    122233457899999999999999999999999988888887


Q ss_pred             E
Q psy15127        157 V  157 (633)
Q Consensus       157 V  157 (633)
                      |
T Consensus        81 v   81 (81)
T cd05765          81 V   81 (81)
T ss_pred             C
Confidence            5

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.27  E-value=2.2e-11  Score=91.85  Aligned_cols=73  Identities=34%  Similarity=0.661  Sum_probs=58.2

Q ss_pred             EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc-cCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127        258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT-QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      ++|.|.+.|.|.|.++|+|+|....  +.....++... .++.|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~--~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDF--PAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccC--CcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            4799999999999999999986432  11122333332 3468999999999999999999999999999888877

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.27  E-value=3.3e-11  Score=92.76  Aligned_cols=78  Identities=28%  Similarity=0.519  Sum_probs=60.2

Q ss_pred             CceEEEEEEEeeecCCeeEEEECCE---EEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy15127        255 PRVNRLSCFAEGSPLPSVFWTQEGS---QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  331 (633)
Q Consensus       255 g~~~~l~C~~~g~p~~~v~W~~~g~---~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  331 (633)
                      |+.+.|.|.+.|.|.|.+.|++++.   .+...+.....++.....+.|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            5789999999999999999999742   2221121112233444557899999999999999999999999998888876


Q ss_pred             E
Q psy15127        332 V  332 (633)
Q Consensus       332 v  332 (633)
                      |
T Consensus        81 v   81 (81)
T cd05765          81 V   81 (81)
T ss_pred             C
Confidence            4

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.27  E-value=2.8e-11  Score=90.43  Aligned_cols=70  Identities=30%  Similarity=0.475  Sum_probs=57.2

Q ss_pred             EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127        258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      +.|.|.+.|.|.|.+.|++++..+..     .........+.|.|.++..+|.|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~-----~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPA-----DRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCC-----CceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            47999999999999999999876531     11112234568999999999999999999999999998888776

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.26  E-value=3.9e-11  Score=90.34  Aligned_cols=73  Identities=30%  Similarity=0.509  Sum_probs=59.8

Q ss_pred             CceEEEEEEEeeecCCeeEEEE-CCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127        255 PRVNRLSCFAEGSPLPSVFWTQ-EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       255 g~~~~l~C~~~g~p~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+.     ...+.....+++|.|..+..+|.|.|+|.|.|..|..+.++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~-----~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLIS-----NSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEec-----CCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            5789999999999999999997 455442     113344456779999999999999999999999999988877764

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.26  E-value=2.3e-11  Score=95.34  Aligned_cols=72  Identities=39%  Similarity=0.582  Sum_probs=57.3

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeC----CccCCC-CC--eEEcc----------cceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         86 GSVVEFVCRVGGDPLPTILWRRD----DGKMPT-GR--AKILD----------DRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        86 G~~~~L~C~~~~~p~p~i~W~~~----~~~i~~-~~--~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      |++++|.|.+.|.|.|.|+|+|+    +..+.. +.  .....          .+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            78999999999999999999984    333321 11  11111          147999999999999999999999999


Q ss_pred             EEEEEEEEE
Q psy15127        149 ISLRASLTV  157 (633)
Q Consensus       149 ~s~~~~l~V  157 (633)
                      ....+.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            988888887

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.26  E-value=5e-11  Score=93.06  Aligned_cols=78  Identities=23%  Similarity=0.405  Sum_probs=62.2

Q ss_pred             eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc-cCceEEEcCCCCCCCeEEEEEEEeCCcee-E
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT-QEGTLRIQGVQKEDAGFFVCSALSVAGST-T  325 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~  325 (633)
                      ....+.+|++++|.|.+.|. .|.+.|++++..+..      .++... .++.|.|.++..+|.|.|+|.|.|..|.. +
T Consensus        11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S   83 (91)
T cd05740          11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP------PRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTS   83 (91)
T ss_pred             CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC------CCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence            34467789999999999999 999999999987631      223333 34689999999999999999999999975 4


Q ss_pred             EEEEEEE
Q psy15127        326 VRAFLQV  332 (633)
Q Consensus       326 ~~~~l~v  332 (633)
                      ..+.|.|
T Consensus        84 ~~~~L~V   90 (91)
T cd05740          84 DPYILNV   90 (91)
T ss_pred             eeEEEEe
Confidence            4555655

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.26  E-value=1.1e-10  Score=91.99  Aligned_cols=83  Identities=27%  Similarity=0.434  Sum_probs=68.2

Q ss_pred             eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEE
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  327 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  327 (633)
                      ..+.+..|+.+.|.|.+.|.|.+.+.|+++|..+..  .............+|.|.++..+|.|.|+|.|.|..|..+..
T Consensus         8 ~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~   85 (90)
T PF07679_consen    8 KDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTS--SQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATAS   85 (90)
T ss_dssp             SEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEES--SSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEE
T ss_pred             CCEEEeCCCEEEEEEEEEeCCCCcccccccccceee--eeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEE
Confidence            556778899999999999999999999999998863  112222222345589999999999999999999999999999


Q ss_pred             EEEEE
Q psy15127        328 AFLQV  332 (633)
Q Consensus       328 ~~l~v  332 (633)
                      +.|.|
T Consensus        86 ~~l~V   90 (90)
T PF07679_consen   86 VNLTV   90 (90)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            88875

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.26  E-value=4.3e-11  Score=90.92  Aligned_cols=73  Identities=23%  Similarity=0.388  Sum_probs=58.3

Q ss_pred             CceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEE---ccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy15127        255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV---TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  331 (633)
Q Consensus       255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  331 (633)
                      |+++.|.|.+.|.|.|.+.|++++..+..     ..++.+   ...+.|.|.++..+|.|.|+|.|.|..|.....+.+.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~-----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~   75 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPD-----SARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI   75 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCC-----CCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence            57899999999999999999999876531     122222   2235899999999999999999999999887666554


Q ss_pred             E
Q psy15127        332 V  332 (633)
Q Consensus       332 v  332 (633)
                      +
T Consensus        76 ~   76 (78)
T cd05743          76 L   76 (78)
T ss_pred             E
Confidence            4

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.26  E-value=4.7e-11  Score=95.26  Aligned_cols=83  Identities=25%  Similarity=0.387  Sum_probs=63.8

Q ss_pred             EEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEcc---CceEEEcCCCCCCCeEEEEEEEeCCceeEE
Q psy15127        250 LIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ---EGTLRIQGVQKEDAGFFVCSALSVAGSTTV  326 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  326 (633)
                      ....+|+.+.|.|.+.|.|.|.+.|++++..+.........++....   .+.|.|.++..+|.|.|+|.|.|..|..+.
T Consensus        11 ~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   90 (96)
T cd05732          11 QTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQ   90 (96)
T ss_pred             eeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEE
Confidence            45567899999999999999999999998654321111122333322   347999999999999999999999999988


Q ss_pred             EEEEEE
Q psy15127        327 RAFLQV  332 (633)
Q Consensus       327 ~~~l~v  332 (633)
                      ++.|.|
T Consensus        91 s~~l~v   96 (96)
T cd05732          91 SMYLEV   96 (96)
T ss_pred             EEEEeC
Confidence            887764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.25  E-value=3e-11  Score=92.16  Aligned_cols=69  Identities=41%  Similarity=0.705  Sum_probs=55.2

Q ss_pred             EEEEEEEeccCCCeEEEEeCCccC---------CCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceE-EEEEEEEE
Q psy15127         89 VEFVCRVGGDPLPTILWRRDDGKM---------PTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSI-SLRASLTV  157 (633)
Q Consensus        89 ~~L~C~~~~~p~p~i~W~~~~~~i---------~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~-s~~~~l~V  157 (633)
                      ++|.|.+.|.|.|.+.|+|++...         ..++.....+++|.|.++..+|+|.|.|.|.|..|.. ++.+.|+|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~   79 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV   79 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence            579999999999999999975421         1234444567899999999999999999999999984 66666654

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.25  E-value=4.4e-11  Score=89.48  Aligned_cols=71  Identities=18%  Similarity=0.318  Sum_probs=54.4

Q ss_pred             EEEEEeeecCCeeEEEECCEEEEeccCCccceEEE----ccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy15127        260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV----TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  331 (633)
Q Consensus       260 l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  331 (633)
                      |.|.+.|+|.|+++|+|+|..+..... ....+..    ...+.|.|.++..+|+|.|+|.|.|..|..+.++.+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEY-ICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcc-eeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            689999999999999999998852110 0001111    1235799999999999999999999999988877654

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.24  E-value=5.9e-11  Score=92.03  Aligned_cols=80  Identities=31%  Similarity=0.589  Sum_probs=66.3

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEec-cCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEE
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGG-DPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLR  152 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~-~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~  152 (633)
                      ....|....+.+|++++|.|.+.+ .|.+.+.|++++..++..  ....++.|.|.+++.+|+|.|+|.+.|..|..+..
T Consensus         4 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~   81 (85)
T cd05754           4 TVEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEAT   81 (85)
T ss_pred             EecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--ccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEE
Confidence            345677788999999999999964 688899999998776542  22345789999999999999999999999988877


Q ss_pred             EEE
Q psy15127        153 ASL  155 (633)
Q Consensus       153 ~~l  155 (633)
                      +.|
T Consensus        82 ~~l   84 (85)
T cd05754          82 ATL   84 (85)
T ss_pred             EEE
Confidence            765

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.24  E-value=1.2e-10  Score=91.42  Aligned_cols=83  Identities=23%  Similarity=0.401  Sum_probs=65.6

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccC--ceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE--GTLRIQGVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                      +..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+...  .. ........  .+|.|.++..+|+|.|+|.|.|..|..
T Consensus         8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~--~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   84 (92)
T cd05891           8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELS--EH-YSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGE   84 (92)
T ss_pred             CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCC--CC-EEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCce
Confidence            34567788999999999999999999999999876421  11 11222222  379999999999999999999999999


Q ss_pred             EEEEEEEE
Q psy15127        325 TVRAFLQV  332 (633)
Q Consensus       325 ~~~~~l~v  332 (633)
                      ..++.|.|
T Consensus        85 ~~~~~v~~   92 (92)
T cd05891          85 TVDVTVSV   92 (92)
T ss_pred             eeEEEEEC
Confidence            98887764

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.23  E-value=6.2e-11  Score=89.72  Aligned_cols=70  Identities=27%  Similarity=0.499  Sum_probs=59.3

Q ss_pred             EEEEEEEeccCCCeEEEEeCCccCCCC---CeEEccc-ceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy15127         89 VEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDD-RSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH  158 (633)
Q Consensus        89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~---~~~~~~~-~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~  158 (633)
                      +.|.|.+.|.|.|.+.|+|++..+..+   +.....+ ..|.|.+++.+|+|.|+|.+.|..|..+..+.|.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            469999999999999999999887543   2333333 479999999999999999999999999999999886

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.23  E-value=5e-11  Score=93.31  Aligned_cols=77  Identities=22%  Similarity=0.309  Sum_probs=57.4

Q ss_pred             CceEEEEEEEeeecCCeeEEEECC----EEEEeccCCccceEE--------EccCceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127        255 PRVNRLSCFAEGSPLPSVFWTQEG----SQVLMFPGNAYGHLH--------VTQEGTLRIQGVQKEDAGFFVCSALSVAG  322 (633)
Q Consensus       255 g~~~~l~C~~~g~p~~~v~W~~~g----~~~~~~~~~~~~~~~--------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  322 (633)
                      |+.++|.|.+.|.|.|.|+|+|++    ..+. ..........        ......|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYG-PDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeC-CCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence            578999999999999999999964    2221 0100100110        11234799999999999999999999999


Q ss_pred             eeEEEEEEEE
Q psy15127        323 STTVRAFLQV  332 (633)
Q Consensus       323 ~~~~~~~l~v  332 (633)
                      ....++.|.|
T Consensus        80 ~~~~sa~L~V   89 (90)
T cd04974          80 PSHHSAWLTV   89 (90)
T ss_pred             cccCCEEEEe
Confidence            9999998887

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.22  E-value=1.4e-10  Score=90.34  Aligned_cols=79  Identities=28%  Similarity=0.481  Sum_probs=60.5

Q ss_pred             eeEEecCCceEEEEEEEeeecCCeeEEEEC-CEEEEeccCCccceEEEccCc---eEEEcCCCCCCCeEEEEEEEeCCce
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQE-GSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSALSVAGS  323 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~-g~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~Y~C~a~n~~g~  323 (633)
                      ....+..|+.+.|.|.+.|.|. .+.|+++ +..+.  .   ..++....++   .|.|.++..+|+|.|+|.|.|..|.
T Consensus         8 ~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~--~---~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   81 (92)
T cd05866           8 SKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIV--S---SQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ   81 (92)
T ss_pred             cceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEec--C---CCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCc
Confidence            3455778999999999999998 8999985 55543  1   1344443333   8999999999999999999999998


Q ss_pred             e-EEEEEEEE
Q psy15127        324 T-TVRAFLQV  332 (633)
Q Consensus       324 ~-~~~~~l~v  332 (633)
                      . ..++.|.+
T Consensus        82 ~~~~~i~l~~   91 (92)
T cd05866          82 TQEATVVLEI   91 (92)
T ss_pred             EEEEEEEEEE
Confidence            6 55555543

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.22  E-value=8.3e-11  Score=89.35  Aligned_cols=71  Identities=15%  Similarity=0.255  Sum_probs=54.5

Q ss_pred             EEEEEeeecCCeeEEEECCEEEEeccCCccceEEE------ccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy15127        260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV------TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  331 (633)
Q Consensus       260 l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  331 (633)
                      |.|.+.|+|.|.++|+|+|..+..... .......      ...+.|.|.++..+|+|.|+|.|.|..|..+.++.+.
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDY-IRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCc-eeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            689999999999999999998752210 0001111      1234799999999999999999999999998887664

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.22  E-value=6.1e-11  Score=91.57  Aligned_cols=79  Identities=22%  Similarity=0.370  Sum_probs=62.1

Q ss_pred             EEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEE
Q psy15127        250 LIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF  329 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  329 (633)
                      +....|+.+.|.|.+.|.|.|.+.|++++..+....    ..........|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~----~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~   79 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTE----IGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYK   79 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCc----cceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEE
Confidence            345568999999999999999999999998663211    1111223458999999999999999999999999888777


Q ss_pred             EEE
Q psy15127        330 LQV  332 (633)
Q Consensus       330 l~v  332 (633)
                      |.|
T Consensus        80 v~v   82 (82)
T cd05856          80 VDV   82 (82)
T ss_pred             EeC
Confidence            653

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.22  E-value=7.2e-11  Score=91.25  Aligned_cols=72  Identities=18%  Similarity=0.278  Sum_probs=58.0

Q ss_pred             CCeEEEEEEEecc--CCCeEEEEeCCccCCCCCe----EE-----cccceEEEccCCCCCCeEEEEEEEeCCceEEEEEE
Q psy15127         86 GSVVEFVCRVGGD--PLPTILWRRDDGKMPTGRA----KI-----LDDRSLQIENVGPQDEGLYICDVENLVGSISLRAS  154 (633)
Q Consensus        86 G~~~~L~C~~~~~--p~p~i~W~~~~~~i~~~~~----~~-----~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~  154 (633)
                      |+.+.|.|.+.+.  |.+.++|++++..+.....    ..     ...+.|+|.+++.+|+|.|+|.|.|..+..++.+.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            7899999999998  7889999998875532211    11     12358999999999999999999999999888888


Q ss_pred             EEE
Q psy15127        155 LTV  157 (633)
Q Consensus       155 l~V  157 (633)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            776

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.22  E-value=1.4e-10  Score=94.05  Aligned_cols=81  Identities=21%  Similarity=0.303  Sum_probs=62.4

Q ss_pred             CCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc----cCceEEEcCCC-CCCCeEEEEEEEeCCceeEEEE
Q psy15127        254 HPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT----QEGTLRIQGVQ-KEDAGFFVCSALSVAGSTTVRA  328 (633)
Q Consensus       254 ~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~----~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~  328 (633)
                      .|..++|.|.+.|.|++.++|+++|..+..... ........    ..+.|.|.++. .+|.|.|+|.|.|..|.....+
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~-r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i  100 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNP-RYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDI  100 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEECCEECCCCCC-eEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEE
Confidence            567899999999999999999999987742111 11100111    13579999997 5899999999999999999999


Q ss_pred             EEEEEec
Q psy15127        329 FLQVREF  335 (633)
Q Consensus       329 ~l~v~~~  335 (633)
                      .|.+...
T Consensus       101 ~L~~~~~  107 (109)
T cd05773         101 QLVSTSR  107 (109)
T ss_pred             EEEecCC
Confidence            9988753

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.22  E-value=4.1e-11  Score=90.65  Aligned_cols=66  Identities=26%  Similarity=0.469  Sum_probs=53.9

Q ss_pred             EEEEEEEec-cCCCeEEEEeCCccCCCCCeE----E---cccceEEEccCCCCCCeEEEEEEEeCCceEEEEEE
Q psy15127         89 VEFVCRVGG-DPLPTILWRRDDGKMPTGRAK----I---LDDRSLQIENVGPQDEGLYICDVENLVGSISLRAS  154 (633)
Q Consensus        89 ~~L~C~~~~-~p~p~i~W~~~~~~i~~~~~~----~---~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~  154 (633)
                      +.|.|.+.| .|.|.++|+|++..+......    .   .....|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            469999999 899999999999988643211    1   12368999999999999999999999998776654

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.22  E-value=9.5e-11  Score=91.86  Aligned_cols=79  Identities=25%  Similarity=0.455  Sum_probs=59.2

Q ss_pred             CCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccC---------CCCCeEEc----ccceEEEccCCCCCCeEEEEEEEe
Q psy15127         78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM---------PTGRAKIL----DDRSLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus        78 ~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i---------~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                      ..++.+.+|+++.|.|.+.+.|.+.|.|++++..+         ...++...    .+..|.|.+++.+|+|.|+|.+..
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            35678999999999999999999999999987643         12333322    135899999999999999999986


Q ss_pred             CCceEEEEEEEEE
Q psy15127        145 LVGSISLRASLTV  157 (633)
Q Consensus       145 ~~g~~s~~~~l~V  157 (633)
                      .. ..++.+.|+|
T Consensus        84 ~~-~~~~~~~~~v   95 (95)
T cd05882          84 MP-VRTAKATVTV   95 (95)
T ss_pred             ec-cccEEEEEEC
Confidence            32 3444555543

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.21  E-value=6.4e-11  Score=92.20  Aligned_cols=77  Identities=22%  Similarity=0.377  Sum_probs=62.0

Q ss_pred             ceEEEcCCeEEEEEEEec-----cCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEE
Q psy15127         80 DATVLSGSVVEFVCRVGG-----DPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRAS  154 (633)
Q Consensus        80 ~~~~~~G~~~~L~C~~~~-----~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~  154 (633)
                      ...+.+|+.+.|.|...+     +|.|.+.|+|++.++...+.....++.|.|.+++.+|+|.|+|.+.|..+.....+.
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t   83 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVT   83 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEE
Confidence            356889999999998753     257799999999999876555557789999999999999999999998877544444


Q ss_pred             EE
Q psy15127        155 LT  156 (633)
Q Consensus       155 l~  156 (633)
                      ..
T Consensus        84 ~t   85 (92)
T cd05757          84 RT   85 (92)
T ss_pred             EE
Confidence            33

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.21  E-value=1.1e-10  Score=91.40  Aligned_cols=82  Identities=24%  Similarity=0.399  Sum_probs=63.9

Q ss_pred             CCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC----CeEEcccceEEEccCCCCCCeEEEEEEEeCC-ceEEE
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG----RAKILDDRSLQIENVGPQDEGLYICDVENLV-GSISL  151 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~----~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~-g~~s~  151 (633)
                      .|..+.+.+|+.+.|.|.+.+ |.+.+.|+|++..+...    .+.......|.|.+++.+|+|.|.|.|.+.. +....
T Consensus         2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~   80 (89)
T cd04979           2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLA   80 (89)
T ss_pred             cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEe
Confidence            355678899999999999976 78899999999876543    2333344679999999999999999998654 44677


Q ss_pred             EEEEEEEe
Q psy15127        152 RASLTVHL  159 (633)
Q Consensus       152 ~~~l~V~~  159 (633)
                      ...|.|.+
T Consensus        81 ~~~l~V~~   88 (89)
T cd04979          81 TYSLNVLE   88 (89)
T ss_pred             EEEEEEec
Confidence            77777753

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.20  E-value=1.7e-10  Score=98.84  Aligned_cols=78  Identities=22%  Similarity=0.253  Sum_probs=66.5

Q ss_pred             eEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCC-CeEEEEECCEE
Q psy15127        124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPE-PTLHWKKNGQF  202 (633)
Q Consensus       124 ~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~i~W~~~~~~  202 (633)
                      +|+|.+++.+|+|.|.|.+.+..+..+..+.|.|..+ |.+...+.......|+.+.|.|.+...+|. +.|.|+++|..
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~-P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~   80 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEP-PRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG   80 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecC-CceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence            6999999999999999999998888899999999987 777777766555589999999996555675 59999999864

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.20  E-value=7.4e-11  Score=92.45  Aligned_cols=77  Identities=25%  Similarity=0.361  Sum_probs=57.3

Q ss_pred             CceEEEEEEEeeecCCeeEEEEC----CEEEEeccCCccceEE------E--ccCceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127        255 PRVNRLSCFAEGSPLPSVFWTQE----GSQVLMFPGNAYGHLH------V--TQEGTLRIQGVQKEDAGFFVCSALSVAG  322 (633)
Q Consensus       255 g~~~~l~C~~~g~p~~~v~W~~~----g~~~~~~~~~~~~~~~------~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  322 (633)
                      |+.++|.|.+.|.|.|.+.|+++    |..+.. .......+.      .  ...+.|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGP-DGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCC-CCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence            57899999999999999999984    333320 000000000      0  0124799999999999999999999999


Q ss_pred             eeEEEEEEEE
Q psy15127        323 STTVRAFLQV  332 (633)
Q Consensus       323 ~~~~~~~l~v  332 (633)
                      ....++.|.|
T Consensus        80 ~~~~~a~L~V   89 (90)
T cd05858          80 ISHHSAWLTV   89 (90)
T ss_pred             cccceEEEEE
Confidence            9999998877

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.20  E-value=1.9e-10  Score=90.66  Aligned_cols=69  Identities=25%  Similarity=0.420  Sum_probs=55.0

Q ss_pred             CCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCC-CCCCeEEEEEEEeCCceeEE
Q psy15127        254 HPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ-KEDAGFFVCSALSVAGSTTV  326 (633)
Q Consensus       254 ~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~  326 (633)
                      .|+.++|.|.+.|.|.|.++|+|+|..+...   ...++. ..++.|.|.++. .+|.|.|+|.|.|..|....
T Consensus        18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~---~~~~~~-~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S   87 (94)
T cd05848          18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTE---SDYRYS-LIDGNLIISNPSEVKDSGRYQCLATNSIGSILS   87 (94)
T ss_pred             CCCEEEEEEEeeecCCCEEEEEECCeECccC---CCceEE-eeCCeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence            4789999999999999999999999877421   112232 245689999885 69999999999999998743

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=99.19  E-value=8.6e-11  Score=91.50  Aligned_cols=79  Identities=27%  Similarity=0.377  Sum_probs=65.7

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.+++.|+|++|        ...++.+++| .|+|+......      .|.     .+......+.++|.+|+|+
T Consensus         7 ~v~~~~~~sv~v~W~~~--------~~~~~~~~~y-~v~~~~~~~~~------~~~-----~~~~~~~~~~~~i~~L~p~   66 (85)
T PF00041_consen    7 SVSNISPTSVTVSWKPP--------SSGNGPITGY-RVEYRSVNSTS------DWQ-----EVTVPGNETSYTITGLQPG   66 (85)
T ss_dssp             EEEEECSSEEEEEEEES--------SSTSSSESEE-EEEEEETTSSS------EEE-----EEEEETTSSEEEEESCCTT
T ss_pred             EEEECCCCEEEEEEECC--------CCCCCCeeEE-EEEEEecccce------eee-----eeeeeeeeeeeeeccCCCC
Confidence            78888999999999965        2678999999 99998887654      122     3334455679999999999


Q ss_pred             eeEEEEEeccccccccccC
Q psy15127        614 TKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s  632 (633)
                      +.|.|+|+|.|..|+|++|
T Consensus        67 t~Y~~~v~a~~~~g~g~~S   85 (85)
T PF00041_consen   67 TTYEFRVRAVNSDGEGPPS   85 (85)
T ss_dssp             SEEEEEEEEEETTEEEEEE
T ss_pred             CEEEEEEEEEeCCcCcCCC
Confidence            9999999999999999987

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.19  E-value=1.5e-10  Score=90.20  Aligned_cols=80  Identities=25%  Similarity=0.446  Sum_probs=63.6

Q ss_pred             eeEEecCCceEEEEEEE-eeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCcee-E
Q psy15127        248 SLLIWNHPRVNRLSCFA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST-T  325 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~  325 (633)
                      ....+.+|+++.|.|.+ .|.|.|.+.|+++|..+...    ..+.....++.|.|.++..+|+|.|+|.|.|..|.. +
T Consensus         4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~----~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   79 (86)
T cd05724           4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLD----NERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERES   79 (86)
T ss_pred             ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCC----CCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceee
Confidence            34566789999999998 79999999999999876421    234445557799999999999999999999999986 4


Q ss_pred             EEEEEE
Q psy15127        326 VRAFLQ  331 (633)
Q Consensus       326 ~~~~l~  331 (633)
                      ..+.|.
T Consensus        80 ~~~~l~   85 (86)
T cd05724          80 AAARLS   85 (86)
T ss_pred             eeEEEE
Confidence            444443

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.19  E-value=1.9e-10  Score=87.08  Aligned_cols=73  Identities=32%  Similarity=0.503  Sum_probs=59.6

Q ss_pred             EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccC-ceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127        258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR  333 (633)
Q Consensus       258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  333 (633)
                      +.|.|.+.|.|+|.+.|+|++..+...   ...++....+ ..|.|.++..+|.|.|+|.|.|..|..+..+.|.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~---~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPK---LSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCC---CCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            369999999999999999999876421   1123333333 479999999999999999999999999999999886

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.19  E-value=1.2e-10  Score=88.54  Aligned_cols=76  Identities=21%  Similarity=0.358  Sum_probs=61.0

Q ss_pred             EEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEE
Q psy15127        250 LIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF  329 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  329 (633)
                      ..+.+|+.+.|.|.+.+. .+.+.|+|+|..+..     ..+..+ ....|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus         4 ~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~-----~~~~~~-~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~   76 (79)
T cd04973           4 YSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGE-----NNRTRI-TGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFS   76 (79)
T ss_pred             EEecCCCCEEEEEEecCC-CceEEEeeCCcCCCC-----CceEEE-eCCEEEECCCChhhCEEEEEEEeCCCCcccEEEE
Confidence            456789999999999986 568999999987741     123333 3458999999999999999999999998877776


Q ss_pred             EEE
Q psy15127        330 LQV  332 (633)
Q Consensus       330 l~v  332 (633)
                      |.|
T Consensus        77 v~V   79 (79)
T cd04973          77 VNV   79 (79)
T ss_pred             EeC
Confidence            653

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.19  E-value=1.2e-10  Score=87.74  Aligned_cols=66  Identities=27%  Similarity=0.499  Sum_probs=51.0

Q ss_pred             EEEEEEEeccCCCeEEEEeCCccCC---CCCeEE-cccceEEEccCC----CCCCeEEEEEEEeCCceE-EEEEE
Q psy15127         89 VEFVCRVGGDPLPTILWRRDDGKMP---TGRAKI-LDDRSLQIENVG----PQDEGLYICDVENLVGSI-SLRAS  154 (633)
Q Consensus        89 ~~L~C~~~~~p~p~i~W~~~~~~i~---~~~~~~-~~~~~L~i~~v~----~~d~G~Y~C~~~n~~g~~-s~~~~  154 (633)
                      +.|.|.+.|.|.|.|+|+|++..+.   ..+... ..+++|.|.++.    .+|+|.|+|.|.|..|.. +..+.
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~   75 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKIL   75 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEE
Confidence            4799999999999999999998763   233333 346799998875    247999999999999984 44443

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.19  E-value=8.6e-11  Score=88.87  Aligned_cols=67  Identities=30%  Similarity=0.560  Sum_probs=52.3

Q ss_pred             EEEEEEEeccCCCeEEEEeCCccCCCC---CeEE-cccceEEEccCCC----CCCeEEEEEEEeCCceE-EEEEEE
Q psy15127         89 VEFVCRVGGDPLPTILWRRDDGKMPTG---RAKI-LDDRSLQIENVGP----QDEGLYICDVENLVGSI-SLRASL  155 (633)
Q Consensus        89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~---~~~~-~~~~~L~i~~v~~----~d~G~Y~C~~~n~~g~~-s~~~~l  155 (633)
                      +.|.|.+.|.|.|.|+|+|++..+...   +... ..++.|.|.++..    +|+|.|+|.|.|..|.. +..+.|
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l   76 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL   76 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence            479999999999999999999987432   2222 2468999999864    78999999999999974 444443

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.18  E-value=1.4e-10  Score=85.22  Aligned_cols=70  Identities=23%  Similarity=0.295  Sum_probs=54.2

Q ss_pred             EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127        258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      +.|.|.+.|.|+|++.|+|+|.++..    ...+... ...+|.|.++..+|+|.|+|.|.|..........+.+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~----~~~~~~~-~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~   70 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAE----KCSRYHV-DGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL   70 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCC----CCcEEEe-CCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence            36999999999999999999987642    1123333 3458999999999999999999998766655555443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.18  E-value=2.6e-10  Score=87.72  Aligned_cols=73  Identities=19%  Similarity=0.366  Sum_probs=56.7

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCccCCCCC----eEEc----ccceEEEccCCCCCCeEEEEEEEeCCc--eEEEEEEE
Q psy15127         86 GSVVEFVCRVGGDPLPTILWRRDDGKMPTGR----AKIL----DDRSLQIENVGPQDEGLYICDVENLVG--SISLRASL  155 (633)
Q Consensus        86 G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~----~~~~----~~~~L~i~~v~~~d~G~Y~C~~~n~~g--~~s~~~~l  155 (633)
                      |++++|.|.+.+.|.+.+.|++.++......    ....    ....|.|.+++.+|+|.|.|.|.|..+  ..++.+.|
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            7899999999999999999998776432111    1111    135899999999999999999998776  46777777


Q ss_pred             EEE
Q psy15127        156 TVH  158 (633)
Q Consensus       156 ~V~  158 (633)
                      +|.
T Consensus        81 ~V~   83 (84)
T cd05861          81 TVH   83 (84)
T ss_pred             EEe
Confidence            775

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.18  E-value=1.5e-10  Score=87.33  Aligned_cols=67  Identities=22%  Similarity=0.475  Sum_probs=51.4

Q ss_pred             EEEEEEEeccCCCeEEEEeCCccCCC---CCeEE-cccceEEEccCCC----CCCeEEEEEEEeCCceE-EEEEEE
Q psy15127         89 VEFVCRVGGDPLPTILWRRDDGKMPT---GRAKI-LDDRSLQIENVGP----QDEGLYICDVENLVGSI-SLRASL  155 (633)
Q Consensus        89 ~~L~C~~~~~p~p~i~W~~~~~~i~~---~~~~~-~~~~~L~i~~v~~----~d~G~Y~C~~~n~~g~~-s~~~~l  155 (633)
                      +.|.|.+.|.|.|.|+|+|++.++..   .+... ..+++|.|..+..    .|+|.|+|.|.|..|.. +..+.|
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI   76 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence            47999999999999999999998732   22222 2467899988875    37899999999999984 334443

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.17  E-value=2e-10  Score=91.13  Aligned_cols=79  Identities=29%  Similarity=0.472  Sum_probs=61.1

Q ss_pred             EEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCC-----CCCCCeEEEEEEEeC-Cce
Q psy15127        250 LIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGV-----QKEDAGFFVCSALSV-AGS  323 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~G~Y~C~a~n~-~g~  323 (633)
                      ....+|+++.|.|.+.|.|.|.+.|+|+|..+...   ...+.....++.|.|.++     ...|.|.|+|.|.|. .|.
T Consensus         9 ~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~---~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~   85 (95)
T cd05722           9 IVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLV---SDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGS   85 (95)
T ss_pred             eEEcCCCCEEEeeecccCCCCEEEEEECCeECccc---cCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCc
Confidence            45567899999999999999999999999877422   112334455667888776     588999999999999 998


Q ss_pred             e-EEEEEEE
Q psy15127        324 T-TVRAFLQ  331 (633)
Q Consensus       324 ~-~~~~~l~  331 (633)
                      . +..+.|.
T Consensus        86 ~~s~~~~l~   94 (95)
T cd05722          86 IVSRTARLT   94 (95)
T ss_pred             EEEeeeEEe
Confidence            6 5555554

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.17  E-value=1.5e-10  Score=88.30  Aligned_cols=74  Identities=26%  Similarity=0.518  Sum_probs=56.0

Q ss_pred             EEEEEEEeeecCCeeEEEECCEEEEec---cCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCcee-EEEEEEE
Q psy15127        258 NRLSCFAEGSPLPSVFWTQEGSQVLMF---PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST-TVRAFLQ  331 (633)
Q Consensus       258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~  331 (633)
                      ++|.|.+.|+|.|.+.|++++......   ......+.....+++|.|.++..+|.|.|.|.|.|..|.. +..+.|.
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~   78 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT   78 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence            479999999999999999975422100   0012345555667899999999999999999999999986 5555554

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.16  E-value=2.4e-10  Score=92.07  Aligned_cols=85  Identities=29%  Similarity=0.462  Sum_probs=60.2

Q ss_pred             eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEE---E--cCCCCCCCeEEEEEEEeCCc
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLR---I--QGVQKEDAGFFVCSALSVAG  322 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~---i--~~~~~~d~G~Y~C~a~n~~g  322 (633)
                      ....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+.........+.....++.+.   +  ..+..+|+|.|+|.|.|..|
T Consensus         9 ~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G   88 (100)
T cd07693           9 SDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLG   88 (100)
T ss_pred             ceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEcccc
Confidence            346677899999999999999999999999987753111111222222333332   2  22368999999999999999


Q ss_pred             e-eEEEEEEEE
Q psy15127        323 S-TTVRAFLQV  332 (633)
Q Consensus       323 ~-~~~~~~l~v  332 (633)
                      . .+..+.|.|
T Consensus        89 ~~~s~~~~l~v   99 (100)
T cd07693          89 EAVSRNASLEV   99 (100)
T ss_pred             ceecceEEEEe
Confidence            8 567777665

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.15  E-value=1.6e-10  Score=90.72  Aligned_cols=82  Identities=17%  Similarity=0.177  Sum_probs=64.4

Q ss_pred             eEEecCCceEEEEEEEee-----ecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCce
Q psy15127        249 LLIWNHPRVNRLSCFAEG-----SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  323 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g-----~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  323 (633)
                      ...+.+|+.+.|.|.+.|     .|.+.+.|+|++..+.... ....++.. .++.|.|.++..+|+|.|+|.+.|..|.
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~-~~~~r~~~-~~~~L~I~~~~~~DsG~Y~C~~~N~~g~   85 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPT-EERSRMHQ-QKDLLWFLPAALEDSGLYTCVVRNSTYC   85 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccc-cccceeee-cCCeEEEccCCcccCeEEEEEEcCCCcc
Confidence            445668999999999999     6889999999997643211 11233333 3568999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy15127        324 TTVRAFLQV  332 (633)
Q Consensus       324 ~~~~~~l~v  332 (633)
                      .+..+.|.|
T Consensus        86 ~~~~~~L~v   94 (94)
T cd05756          86 MKVSISLTV   94 (94)
T ss_pred             EEEEEEEEC
Confidence            998887764

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.15  E-value=4.1e-10  Score=88.81  Aligned_cols=72  Identities=28%  Similarity=0.470  Sum_probs=55.8

Q ss_pred             CceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCC-CCCCeEEEEEEEeCCceeEE-EEEE
Q psy15127        255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ-KEDAGFFVCSALSVAGSTTV-RAFL  330 (633)
Q Consensus       255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~-~~~l  330 (633)
                      |++++|.|.+.|+|.|.++|+++|..+....   ..++.. .++.|.|.++. ..|.|.|+|.|.|..|.... .+.|
T Consensus        19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~---~~~~~~-~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   92 (94)
T cd05850          19 EEKVTLGCRARASPPATYRWKMNGTEIKFAP---ESRYTL-VAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL   92 (94)
T ss_pred             CCeEEEEeEceeCCCCEEEEEECCEECccCC---CceEEE-ECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence            4689999999999999999999999874221   123333 35689998865 59999999999999998743 4443

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.15  E-value=1.2e-10  Score=89.27  Aligned_cols=78  Identities=21%  Similarity=0.229  Sum_probs=60.2

Q ss_pred             eCCCceEEEcCCeEEEEEEEe-ccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCce-EEEEE
Q psy15127         76 SEPSDATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS-ISLRA  153 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~-~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~s~~~  153 (633)
                      .+++...+.+|+.++|.|.+. +.+.+.+.|+|+|..+...    .....|.|.+++.+|+|.|+|.+.+..+. .|..+
T Consensus         4 l~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~----~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~   79 (83)
T cd05753           4 LQVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS----HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPV   79 (83)
T ss_pred             EECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc----CCCceEEECccCHHHCEEEEEEEEeCCceecCCCE
Confidence            344455799999999999985 3556689999999866421    23468999999999999999999998876 45555


Q ss_pred             EEEE
Q psy15127        154 SLTV  157 (633)
Q Consensus       154 ~l~V  157 (633)
                      .|+|
T Consensus        80 ~i~~   83 (83)
T cd05753          80 SITV   83 (83)
T ss_pred             EEEC
Confidence            5554

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.14  E-value=1.8e-10  Score=87.08  Aligned_cols=66  Identities=24%  Similarity=0.432  Sum_probs=51.1

Q ss_pred             EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEE-ccCceEEEcCCCC----CCCeEEEEEEEeCCceeEE
Q psy15127        258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV-TQEGTLRIQGVQK----EDAGFFVCSALSVAGSTTV  326 (633)
Q Consensus       258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~----~d~G~Y~C~a~n~~g~~~~  326 (633)
                      ++|.|.+.|+|.|+++|+|+|..+...   ...++.. ..++.|.|..+..    +|+|.|+|.|.|..|....
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~---~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPE---KDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCC---CCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            479999999999999999999876321   1123333 3567899998754    7899999999999997643

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.14  E-value=3.8e-10  Score=85.05  Aligned_cols=67  Identities=24%  Similarity=0.409  Sum_probs=50.7

Q ss_pred             EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEE-ccCceEEEcCCC----CCCCeEEEEEEEeCCceeEEE
Q psy15127        258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV-TQEGTLRIQGVQ----KEDAGFFVCSALSVAGSTTVR  327 (633)
Q Consensus       258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~-~~~~~l~i~~~~----~~d~G~Y~C~a~n~~g~~~~~  327 (633)
                      +.|.|.+.|+|.|.++|+|+|..+...   ...++.. ..+++|.|..+.    .+|.|.|+|.|.|..|.....
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~---~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVA---KDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCc---CCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            469999999999999999999866322   1223333 456789998764    246899999999999976443

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.14  E-value=3.5e-10  Score=89.07  Aligned_cols=79  Identities=25%  Similarity=0.497  Sum_probs=59.8

Q ss_pred             CCceEEEcCCeEEEEEEEeccCCCeEEEEeCCc---------cCCCCCeEEc----ccceEEEccCCCCCCeEEEEEEEe
Q psy15127         78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG---------KMPTGRAKIL----DDRSLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus        78 ~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~---------~i~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                      +.++.+.+|+++.|.|.+.+.|.+.+.|++.+.         .+..+++...    .+.+|.|.+++.+|+|.|+|.+.+
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t   83 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT   83 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence            467889999999999999999999999986322         2233454432    235899999999999999999987


Q ss_pred             CCceEEEEEEEEE
Q psy15127        145 LVGSISLRASLTV  157 (633)
Q Consensus       145 ~~g~~s~~~~l~V  157 (633)
                      ..+ .+..+.|.|
T Consensus        84 ~~~-~~~~~~l~v   95 (95)
T cd07701          84 MPV-KTSKAYLTV   95 (95)
T ss_pred             ecC-ccEEEEEEC
Confidence            533 356666654

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.13  E-value=4.6e-10  Score=89.55  Aligned_cols=79  Identities=24%  Similarity=0.325  Sum_probs=61.5

Q ss_pred             eEEecCCceEEEEEEEeeecCC-eeEEEECCEEEEeccCCccceEEEccC-------ceEEEcCCCC-CCCeEEEEEEEe
Q psy15127        249 LLIWNHPRVNRLSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQE-------GTLRIQGVQK-EDAGFFVCSALS  319 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~-------~~l~i~~~~~-~d~G~Y~C~a~n  319 (633)
                      ......|+.+.|.|.+.|.|.| .+.|++++..+....   ..++.+...       +.|.|.++.. +|.|.|+|.|.|
T Consensus        10 ~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~---~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N   86 (98)
T cd05758          10 TQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGS---SGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWN   86 (98)
T ss_pred             cEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCC---CCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEc
Confidence            3446789999999999999999 699999998774221   123333222       3799999999 458999999999


Q ss_pred             CCceeEEEEEE
Q psy15127        320 VAGSTTVRAFL  330 (633)
Q Consensus       320 ~~g~~~~~~~l  330 (633)
                      ..|.....+.|
T Consensus        87 ~~G~~~~~~~L   97 (98)
T cd05758          87 SFGSGTAIISL   97 (98)
T ss_pred             CCCcccEEEEe
Confidence            99998887765

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.12  E-value=5.8e-10  Score=87.46  Aligned_cols=71  Identities=23%  Similarity=0.415  Sum_probs=55.3

Q ss_pred             CceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCC-CCCCeEEEEEEEeCCceeEE-EEEE
Q psy15127        255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ-KEDAGFFVCSALSVAGSTTV-RAFL  330 (633)
Q Consensus       255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~-~~~l  330 (633)
                      ++.+.|.|.+.|+|.|.++|++++..+..    ...+... .++.|.|.++. .+|+|.|+|.|.|..|.... .+.|
T Consensus        19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~----~~~~~~~-~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          19 EGKVSVNCRARANPFPIYKWRKNNLDIDL----TNDRYSM-VGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL   91 (93)
T ss_pred             CCeEEEeCcCccCCCCEEEEEECCEEccC----CCCeEEE-ECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence            35799999999999999999999987632    1123333 46789999885 68999999999999998743 4443

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.11  E-value=6.6e-10  Score=86.44  Aligned_cols=77  Identities=35%  Similarity=0.555  Sum_probs=62.8

Q ss_pred             eEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCC-eEE----cccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEE
Q psy15127         81 ATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR-AKI----LDDRSLQIENVGPQDEGLYICDVENLVGSISLRASL  155 (633)
Q Consensus        81 ~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~-~~~----~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l  155 (633)
                      +.+.+|+.+.|.|.+.+.|.+.+.|++++..+.... ...    .....|.|.++..+|+|.|.|.+.|..|..+..+.|
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l   83 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV   83 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence            456789999999999999999999999998875332 111    112479999999999999999999999998888877


Q ss_pred             EE
Q psy15127        156 TV  157 (633)
Q Consensus       156 ~V  157 (633)
                      .|
T Consensus        84 ~v   85 (85)
T cd05729          84 DV   85 (85)
T ss_pred             eC
Confidence            64

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.11  E-value=5.4e-10  Score=84.65  Aligned_cols=69  Identities=28%  Similarity=0.422  Sum_probs=54.7

Q ss_pred             eeEEecCCceEEEEEEEeeecCC-eeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEE
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV  326 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  326 (633)
                      ..+.+.+|+++.|.|.+.|.|.| +|+|+++|.++..       .. ....+.|.|..+  .|.|.|.|.|.|.+|....
T Consensus         6 ~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~-------~~-~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s   75 (81)
T cd05749           6 EDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD-------PP-APSPSVLNVPGL--NETSKFSCEAHNAKGVTTS   75 (81)
T ss_pred             CceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC-------CC-CCCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence            34677889999999999999999 7999999997742       00 112357888877  4789999999999997643

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.11  E-value=5.4e-10  Score=84.22  Aligned_cols=67  Identities=27%  Similarity=0.465  Sum_probs=50.8

Q ss_pred             EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEE-ccCceEEEcCCCCC----CCeEEEEEEEeCCceeEEE
Q psy15127        258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV-TQEGTLRIQGVQKE----DAGFFVCSALSVAGSTTVR  327 (633)
Q Consensus       258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~----d~G~Y~C~a~n~~g~~~~~  327 (633)
                      +.|.|.+.|+|.|+++|+|+|..+....   ..+... ..+++|.|..+...    |.|.|+|.|.|..|.....
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~---~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDK---DPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN   72 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcC---CCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence            4799999999999999999998763211   122333 34678888877653    7899999999999986543

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.10  E-value=1.2e-09  Score=85.44  Aligned_cols=84  Identities=24%  Similarity=0.361  Sum_probs=66.9

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCC-eEEEEeCCccCCC---CCeEEcc-------cceEEEccCCCCC-CeEE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPT---GRAKILD-------DRSLQIENVGPQD-EGLY  138 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p-~i~W~~~~~~i~~---~~~~~~~-------~~~L~i~~v~~~d-~G~Y  138 (633)
                      ||.| .......+.+|++++|.|.+.+.|.| .|.|.+++..+..   +++.+..       .+.|.|.++...| .|.|
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y   80 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY   80 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence            4555 66678889999999999999888887 5899988877643   3444432       2579999998867 8999


Q ss_pred             EEEEEeCCceEEEEEEE
Q psy15127        139 ICDVENLVGSISLRASL  155 (633)
Q Consensus       139 ~C~~~n~~g~~s~~~~l  155 (633)
                      .|.|.|.+|.....+.|
T Consensus        81 ~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          81 NCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEeCCccceEEEEe
Confidence            99999999998887766

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.09  E-value=3.1e-10  Score=85.83  Aligned_cols=66  Identities=24%  Similarity=0.397  Sum_probs=51.7

Q ss_pred             EEEEEEEec-cCCCeEEEEeCCccCCCC----C-eEEc---ccceEEEccCCCCCCeEEEEEEEeCCceEEEEEE
Q psy15127         89 VEFVCRVGG-DPLPTILWRRDDGKMPTG----R-AKIL---DDRSLQIENVGPQDEGLYICDVENLVGSISLRAS  154 (633)
Q Consensus        89 ~~L~C~~~~-~p~p~i~W~~~~~~i~~~----~-~~~~---~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~  154 (633)
                      +.|.|.+.+ .|.+.++|+|+|..+...    . ....   ..+.|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            479999864 677899999999888532    1 1111   2367999999999999999999999998776654

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.09  E-value=9.9e-10  Score=86.21  Aligned_cols=78  Identities=23%  Similarity=0.374  Sum_probs=57.4

Q ss_pred             eeEEecCCceEEEEEEEeeecCCeeEEEE-CCEEEEeccCCccceEEEc----cCceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQ-EGSQVLMFPGNAYGHLHVT----QEGTLRIQGVQKEDAGFFVCSALSVAG  322 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~-~g~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g  322 (633)
                      ....+..|+++.|.|.+.|.|+ .+.|++ ++..+..  .   .+....    ..++|.|.++..+|.|.|+|.|.|..|
T Consensus         8 ~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~--~---~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g   81 (92)
T cd04977           8 SQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVT--Q---QQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKG   81 (92)
T ss_pred             CcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEecc--C---CCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence            3356778999999999999975 999998 5655432  1   111221    124799999999999999999999975


Q ss_pred             e-eEEEEEEE
Q psy15127        323 S-TTVRAFLQ  331 (633)
Q Consensus       323 ~-~~~~~~l~  331 (633)
                      . .+.++.|.
T Consensus        82 ~~~~~sv~l~   91 (92)
T cd04977          82 TESEATVNLK   91 (92)
T ss_pred             CcceeEEEEE
Confidence            4 56666654

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.09  E-value=5.5e-10  Score=84.40  Aligned_cols=72  Identities=21%  Similarity=0.308  Sum_probs=54.3

Q ss_pred             EEEEEEEee-ecCCeeEEEECCEEEEeccCCccceEEE-ccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEE
Q psy15127        258 NRLSCFAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHV-TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF  329 (633)
Q Consensus       258 ~~l~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  329 (633)
                      +.|.|.+.| .|.|.+.|+++|..+.........++.. ...+.|.|.++..+|.|.|+|.|.|..|....++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            369999999 9999999999998775321111001111 23457999999999999999999999999877664

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.07  E-value=4.8e-10  Score=86.64  Aligned_cols=78  Identities=17%  Similarity=0.141  Sum_probs=58.0

Q ss_pred             CceEEEEEEEeee--cCCeeEEEECCEEEEeccCCccceE---EEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEE
Q psy15127        255 PRVNRLSCFAEGS--PLPSVFWTQEGSQVLMFPGNAYGHL---HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF  329 (633)
Q Consensus       255 g~~~~l~C~~~g~--p~~~v~W~~~g~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  329 (633)
                      |+.+.|.|.+.|.  |.+.+.|.+++..+...........   .....+.|.|.+++..|+|.|+|.|.|..|..+.++.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            6789999999999  7889999988765421100000000   0112357999999999999999999999999988888


Q ss_pred             EEE
Q psy15127        330 LQV  332 (633)
Q Consensus       330 l~v  332 (633)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            765

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.07  E-value=5.3e-10  Score=86.56  Aligned_cols=70  Identities=24%  Similarity=0.347  Sum_probs=56.9

Q ss_pred             CceEEEcCCeEEEEEEE-eccCCCeEEEEeCCccC--C-CCCeEEcc-cceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         79 SDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKM--P-TGRAKILD-DRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        79 ~~~~~~~G~~~~L~C~~-~~~p~p~i~W~~~~~~i--~-~~~~~~~~-~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      ....+.+|+.+.|.|.. .|.|.+.+.|++++.++  . ..+..+.. ++.|.|.+|+.+|+|.|+|.|+|....
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~   85 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST   85 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence            44678999999999987 57899999999998754  2 23444443 789999999999999999999987543

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.06  E-value=9.6e-10  Score=84.37  Aligned_cols=79  Identities=35%  Similarity=0.661  Sum_probs=62.0

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCce-E
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS-I  149 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~  149 (633)
                      +|.+...+  ..+.+|+.++|.|.+.+.|.+.+.|++++..+....      ..|.|.+++.+|+|.|+|.+.+..+. .
T Consensus         1 kP~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~------~~~~~~~~~~~~~g~y~C~~~~~~~~~~   72 (80)
T PF13895_consen    1 KPVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ------NGLFIPNVSPEDSGNYTCRASNGSGSNT   72 (80)
T ss_dssp             --EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES------SEEEESSEEGGGTEEEEEEEEETTEEEE
T ss_pred             CcEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee------eeeeeeeeccccCEEEEEEEEeCCCCeE
Confidence            46666555  558999999999999998889999999987765321      23778999999999999999996653 6


Q ss_pred             EEEEEEEE
Q psy15127        150 SLRASLTV  157 (633)
Q Consensus       150 s~~~~l~V  157 (633)
                      +..+.|.|
T Consensus        73 s~~~~v~V   80 (80)
T PF13895_consen   73 STSVNVTV   80 (80)
T ss_dssp             EEEEEEEE
T ss_pred             eeeEEeeC
Confidence            77777765

...

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.06  E-value=1.7e-09  Score=92.62  Aligned_cols=99  Identities=15%  Similarity=0.247  Sum_probs=72.1

Q ss_pred             ceEEEcCCCC--CCeEEEEEEe------------cCcCCeeeeCCCceEEEcCCeEEEEEEEecc-CC-CeEEEEeCCcc
Q psy15127         48 SVLGARGALS--DDQWKLIAKE------------ALIKPFPISEPSDATVLSGSVVEFVCRVGGD-PL-PTILWRRDDGK  111 (633)
Q Consensus        48 ~~L~i~~v~~--~G~Y~C~a~~------------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~-p~-p~i~W~~~~~~  111 (633)
                      ++|+|.+++.  +|.|.|.+.+            +..+|.+...+......+|+.++|.|.+.|. |. +.|.|++++..
T Consensus         1 asL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~   80 (139)
T cd05771           1 ASLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG   80 (139)
T ss_pred             CeEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence            3699999999  9999999977            5667877777766666689999999999885 54 48999999864


Q ss_pred             CC------CCC----eEEccc------ceEEEccCCCCCCeEEEEEEEeCC
Q psy15127        112 MP------TGR----AKILDD------RSLQIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus       112 i~------~~~----~~~~~~------~~L~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      ..      .+.    .....+      +.|.|..-..++.+.|+|.+.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771          81 DSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             CccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence            21      110    111122      457776666667889999997653

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=99.05  E-value=8.5e-10  Score=85.82  Aligned_cols=84  Identities=39%  Similarity=0.629  Sum_probs=70.2

Q ss_pred             CCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEec
Q psy15127        412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENS  491 (633)
Q Consensus       412 ~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~  491 (633)
                      +|..+.+.....+++.|+|.++. .  +++.+.+|.|+|+..+....+...........++|.+|.|++.|.|+|+|.|.
T Consensus         2 ~P~~l~v~~~~~~sv~v~W~~~~-~--~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~   78 (85)
T PF00041_consen    2 APENLSVSNISPTSVTVSWKPPS-S--GNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNS   78 (85)
T ss_dssp             SSEEEEEEEECSSEEEEEEEESS-S--TSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEET
T ss_pred             cCcCeEEEECCCCEEEEEEECCC-C--CCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeC
Confidence            57778888889999999999997 2  25789999999998876554665555555668999999999999999999999


Q ss_pred             cccCCCC
Q psy15127        492 HGLGIPS  498 (633)
Q Consensus       492 ~G~g~~s  498 (633)
                      .|.|++|
T Consensus        79 ~g~g~~S   85 (85)
T PF00041_consen   79 DGEGPPS   85 (85)
T ss_dssp             TEEEEEE
T ss_pred             CcCcCCC
Confidence            9998754

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.03  E-value=2.3e-09  Score=83.53  Aligned_cols=78  Identities=18%  Similarity=0.302  Sum_probs=58.6

Q ss_pred             eEEEcCCeEEEEEEEeccCCCeEEEEeCCc--cC----CCCCeEEcccceEEEccCCCCCCeEEEEEEE-eCCceEEEEE
Q psy15127         81 ATVLSGSVVEFVCRVGGDPLPTILWRRDDG--KM----PTGRAKILDDRSLQIENVGPQDEGLYICDVE-NLVGSISLRA  153 (633)
Q Consensus        81 ~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~--~i----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~-n~~g~~s~~~  153 (633)
                      +.+.+|++++|.|.. +.|.|.++|||++.  ..    ..+.+....++.|.|.+++.+|+|.|+|.+. +..+.....+
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~   84 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKY   84 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEEE
Confidence            457899999999996 47888999998432  21    1223333455789999999999999999998 5666666677


Q ss_pred             EEEEEe
Q psy15127        154 SLTVHL  159 (633)
Q Consensus       154 ~l~V~~  159 (633)
                      +|.|..
T Consensus        85 ~l~v~~   90 (91)
T cd05871          85 TLHVIE   90 (91)
T ss_pred             EEEEec
Confidence            777753

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.02  E-value=1.6e-09  Score=78.60  Aligned_cols=63  Identities=33%  Similarity=0.675  Sum_probs=52.8

Q ss_pred             cCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127         85 SGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVG  147 (633)
Q Consensus        85 ~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g  147 (633)
                      +|++++|.|.+.+.+.+.+.|++++..+............|.|.+++.+|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            589999999988888899999999988774333344567899999999999999999988654

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.01  E-value=3.7e-09  Score=82.86  Aligned_cols=82  Identities=21%  Similarity=0.273  Sum_probs=58.1

Q ss_pred             eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCC---ccceEEEc----cCceEEEcCCCCCCCeEEEEEEEeC
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGN---AYGHLHVT----QEGTLRIQGVQKEDAGFFVCSALSV  320 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~---~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~  320 (633)
                      ....+..|+++.|.|.+.+.|.+.+.|++++..+......   ...++...    ....|.|.++..+|+|.|+|.+.. 
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t-   83 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT-   83 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe-
Confidence            4567788999999999999999999999988654221111   11233322    235899999999999999999977 


Q ss_pred             CceeEEEEEE
Q psy15127        321 AGSTTVRAFL  330 (633)
Q Consensus       321 ~g~~~~~~~l  330 (633)
                      .-..++.+.|
T Consensus        84 ~~~~~~~~~~   93 (95)
T cd05882          84 MPVRTAKATV   93 (95)
T ss_pred             eccccEEEEE
Confidence            2233444444

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.00  E-value=2e-09  Score=82.74  Aligned_cols=78  Identities=18%  Similarity=0.290  Sum_probs=56.2

Q ss_pred             CceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc---cCceEEEcCCCCCCCeEEEEEEEeCCc--eeEEEEE
Q psy15127        255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSALSVAG--STTVRAF  329 (633)
Q Consensus       255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~  329 (633)
                      |++++|.|.+.+.|.+.+.|+++++....... ...+....   ....|.|.+++.+|+|.|+|.|.|..+  ..+.++.
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~   79 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIP-EVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN   79 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCce-EEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence            68899999999999999999998764211000 00011111   234799999999999999999999876  5677777


Q ss_pred             EEEE
Q psy15127        330 LQVR  333 (633)
Q Consensus       330 l~v~  333 (633)
                      |.|.
T Consensus        80 i~V~   83 (84)
T cd05861          80 ITVH   83 (84)
T ss_pred             EEEe
Confidence            7664

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.99  E-value=2.3e-09  Score=81.06  Aligned_cols=71  Identities=20%  Similarity=0.292  Sum_probs=52.8

Q ss_pred             EEEEEEEee-ecCCeeEEEECCEEEEeccCCccceEEEc---cCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEE
Q psy15127        258 NRLSCFAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF  329 (633)
Q Consensus       258 ~~l~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  329 (633)
                      +.|.|.+.+ .|.+.+.|+++|..+..... ...++...   ..+.|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~-~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNK-PDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCC-CCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            469999875 67789999999987742211 11122221   2357999999999999999999999998887764

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.97  E-value=1.8e-09  Score=83.43  Aligned_cols=70  Identities=23%  Similarity=0.256  Sum_probs=58.4

Q ss_pred             CCceEEEcCCeEEEEEE-EeccCCCeEEEEeCCcc-CC-CCCeEEcccceEEEccCCCCCCe-EEEEEEEeCCc
Q psy15127         78 PSDATVLSGSVVEFVCR-VGGDPLPTILWRRDDGK-MP-TGRAKILDDRSLQIENVGPQDEG-LYICDVENLVG  147 (633)
Q Consensus        78 ~~~~~~~~G~~~~L~C~-~~~~p~p~i~W~~~~~~-i~-~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~~~n~~g  147 (633)
                      ...+.+.+|+.+.|.|. ..|.|.|.|.|++++.. +. ..+.....++.|.|.+|+.+|+| .|.|.|.|...
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~   83 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL   83 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence            46788999999999997 58999999999987654 33 34555556799999999999999 89999998754

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.97  E-value=4.9e-09  Score=83.15  Aligned_cols=78  Identities=27%  Similarity=0.551  Sum_probs=57.3

Q ss_pred             CceEEEcCCeEEEEEEEeccCCCeEEEEeCCcc---------CCCCCeEEc----ccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         79 SDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK---------MPTGRAKIL----DDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        79 ~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~---------i~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      +++.+.+|++++|.|.+.+.+.+.+.|++.+..         +..+++...    .+..|.|.+++.+|+|.|+|.+.+.
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   84 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM   84 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence            567799999999999998888889999863321         222344332    2357999999999999999999876


Q ss_pred             CceEEEEEEEEE
Q psy15127        146 VGSISLRASLTV  157 (633)
Q Consensus       146 ~g~~s~~~~l~V  157 (633)
                      .. .++.+.|+|
T Consensus        85 ~~-~~~~~~~~v   95 (95)
T cd05717          85 PV-QTAKATVTV   95 (95)
T ss_pred             CC-ceEEEEEEC
Confidence            43 355555554

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.95  E-value=3.6e-09  Score=81.97  Aligned_cols=75  Identities=25%  Similarity=0.375  Sum_probs=60.6

Q ss_pred             eeEEecCCceEEEEEEEee-ecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEE
Q psy15127        248 SLLIWNHPRVNRLSCFAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV  326 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  326 (633)
                      ....+.+|+.++|.|.+.+ .|.+.+.|++++..+.   .    + ....++.|.|.++..+|+|.|+|.|.|..|..+.
T Consensus         9 ~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~---~----~-~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~   80 (85)
T cd05754           9 RSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLP---S----R-AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEA   80 (85)
T ss_pred             CceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCC---C----c-ccccCCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence            4456678999999999975 6888999999986532   1    1 1223568999999999999999999999999988


Q ss_pred             EEEE
Q psy15127        327 RAFL  330 (633)
Q Consensus       327 ~~~l  330 (633)
                      ++.|
T Consensus        81 ~~~l   84 (85)
T cd05754          81 TATL   84 (85)
T ss_pred             EEEE
Confidence            8765

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.95  E-value=7.9e-09  Score=80.84  Aligned_cols=81  Identities=20%  Similarity=0.299  Sum_probs=61.3

Q ss_pred             ceeEEecCCceEEEEEEEeeecCC-eeEEEECCEEEEeccCCccceEEEc-------cCceEEEcCCCCCC-CeEEEEEE
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVT-------QEGTLRIQGVQKED-AGFFVCSA  317 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d-~G~Y~C~a  317 (633)
                      .......+|+.+.|.|.+.+.|+| .+.|.+++..+...   ...++.+.       ..+.|.|.++...| .|.|.|.|
T Consensus         8 ~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~---~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a   84 (98)
T cd05898           8 EQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESG---TSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTA   84 (98)
T ss_pred             CceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCC---CCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEE
Confidence            344556789999999999999987 67999888755421   12333332       23479999998766 79999999


Q ss_pred             EeCCceeEEEEEE
Q psy15127        318 LSVAGSTTVRAFL  330 (633)
Q Consensus       318 ~n~~g~~~~~~~l  330 (633)
                      .|.+|..+..+.|
T Consensus        85 ~N~~G~d~~~i~L   97 (98)
T cd05898          85 WNSFGSGTAIIQL   97 (98)
T ss_pred             EeCCccceEEEEe
Confidence            9999999887765

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.94  E-value=6.6e-09  Score=81.61  Aligned_cols=69  Identities=29%  Similarity=0.482  Sum_probs=53.7

Q ss_pred             CCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCC-CCCeEEEEEEEeCCceeEE
Q psy15127        254 HPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQK-EDAGFFVCSALSVAGSTTV  326 (633)
Q Consensus       254 ~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~a~n~~g~~~~  326 (633)
                      .++.+.|.|.+.|+|.|.++|++++..+.....   .+.. ..++.|.|.++.. +|.|.|+|.|.|..|....
T Consensus        18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~---~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S   87 (91)
T cd04967          18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPD---SRYS-LVGGNLVISNPSKAKDAGRYQCLASNIVGTVLS   87 (91)
T ss_pred             CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCC---CCEE-EECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence            346799999999999999999999987632211   2222 2456899988874 8999999999999997644

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.92  E-value=8.2e-09  Score=80.18  Aligned_cols=81  Identities=23%  Similarity=0.344  Sum_probs=61.6

Q ss_pred             EEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEE-EccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127        250 LIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLH-VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  328 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  328 (633)
                      .....|+.+.|.|.+.+.|.+.+.|++++..+....  ...... ......|.|.++..+|.|.|.|.+.|..|..+.++
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~   81 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEH--RIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTY   81 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccC--ceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEE
Confidence            445678999999999999999999999998764111  111111 11223699999999999999999999999988887


Q ss_pred             EEEE
Q psy15127        329 FLQV  332 (633)
Q Consensus       329 ~l~v  332 (633)
                      .|.|
T Consensus        82 ~l~v   85 (85)
T cd05729          82 KVDV   85 (85)
T ss_pred             EEeC
Confidence            7653

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.92  E-value=4.2e-09  Score=81.71  Aligned_cols=77  Identities=17%  Similarity=0.285  Sum_probs=58.1

Q ss_pred             eEEEcCCeEEEEEEE-e----ccCCCeEEEEeCCccCCCCC--eEE-cccceEEEccCCCCCCeEEEEEEEeCCce----
Q psy15127         81 ATVLSGSVVEFVCRV-G----GDPLPTILWRRDDGKMPTGR--AKI-LDDRSLQIENVGPQDEGLYICDVENLVGS----  148 (633)
Q Consensus        81 ~~~~~G~~~~L~C~~-~----~~p~p~i~W~~~~~~i~~~~--~~~-~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~----  148 (633)
                      ..+.+|.+..|.|.- .    ..+.+.++||||+.++....  ... ..+..|.|.+|..+|+|.|+|.+.+..+.    
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~   84 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYN   84 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEE
Confidence            457889999999973 2    34667899999999986542  222 23468999999999999999999988654    


Q ss_pred             EEEEEEEEE
Q psy15127        149 ISLRASLTV  157 (633)
Q Consensus       149 ~s~~~~l~V  157 (633)
                      .++.+.|.|
T Consensus        85 vtr~~~l~v   93 (95)
T cd05897          85 ITRIIKLRI   93 (95)
T ss_pred             EEEEEEEEE
Confidence            355555554

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.91  E-value=7.9e-09  Score=79.74  Aligned_cols=73  Identities=22%  Similarity=0.267  Sum_probs=55.8

Q ss_pred             CCeEEEEEEEeccCC--CeEEEEeCCccCCC----C--CeEE----cccceEEEccCCCCCCeEEEEEEEeCCceEEEEE
Q psy15127         86 GSVVEFVCRVGGDPL--PTILWRRDDGKMPT----G--RAKI----LDDRSLQIENVGPQDEGLYICDVENLVGSISLRA  153 (633)
Q Consensus        86 G~~~~L~C~~~~~p~--p~i~W~~~~~~i~~----~--~~~~----~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~  153 (633)
                      |+++.|.|.+.+.+.  ..+.|.+.+..+..    .  +...    ...+.|.|.+++.+|+|.|+|.|.|..+.....+
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            789999999987554  47899887764311    1  1111    1235899999999999999999999999888888


Q ss_pred             EEEEE
Q psy15127        154 SLTVH  158 (633)
Q Consensus       154 ~l~V~  158 (633)
                      .|.|.
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            88875

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.90  E-value=1.6e-08  Score=79.60  Aligned_cols=85  Identities=21%  Similarity=0.371  Sum_probs=59.6

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEecc---CCccceEEEc----cCceEEEcCCCCCCCeEEEEEEEe
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFP---GNAYGHLHVT----QEGTLRIQGVQKEDAGFFVCSALS  319 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~---~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n  319 (633)
                      ...+.+.+|+++.|.|.+.+.|.+.+.|++.+..+....   .....++...    ...+|.|.++..+|+|.|+|.+.+
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t   83 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT   83 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence            345678899999999999999999999987544322111   1122344332    335899999999999999999987


Q ss_pred             CCceeEEEEEEEE
Q psy15127        320 VAGSTTVRAFLQV  332 (633)
Q Consensus       320 ~~g~~~~~~~l~v  332 (633)
                      . ...+.++.|.|
T Consensus        84 ~-~~~~~~~~l~v   95 (95)
T cd07701          84 M-PVKTSKAYLTV   95 (95)
T ss_pred             e-cCccEEEEEEC
Confidence            4 33355555543

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.89  E-value=1.6e-08  Score=77.29  Aligned_cols=68  Identities=18%  Similarity=0.284  Sum_probs=53.6

Q ss_pred             eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCC
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA  321 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  321 (633)
                      ....+..|+++.|.|.+.+ +.+++.|++||..+...    ..+... .++.|.|.+++.+|+|.|+|.|.+..
T Consensus         4 ~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~----~~r~~~-~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           4 RQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPE----SAKYLL-YRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             ceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCC----CceEEE-ECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            3456778999999999854 67899999999987521    123333 45689999999999999999998763

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.89  E-value=4.1e-09  Score=79.34  Aligned_cols=60  Identities=22%  Similarity=0.352  Sum_probs=49.8

Q ss_pred             eeEEecCCceEEEEEEEeeecCC-eeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeC
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV  320 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  320 (633)
                      ....+.+|++++|.|.+.+.|.+ .+.|+|||..+.            .....|.|.++ .+|+|.|+|+|.|.
T Consensus         8 ~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~------------~~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           8 PWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE------------TTTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee------------ccCCeEEEeec-ccCCEEeEEECCCC
Confidence            34556789999999999998864 799999998762            13458999999 99999999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.89  E-value=1.2e-08  Score=79.19  Aligned_cols=79  Identities=24%  Similarity=0.365  Sum_probs=59.3

Q ss_pred             CceEEEcCCeEEEEEEEe-----------ccCCCeEEEEeCCccCCCC-------CeEEcccceEEEccCCCCCCeEEEE
Q psy15127         79 SDATVLSGSVVEFVCRVG-----------GDPLPTILWRRDDGKMPTG-------RAKILDDRSLQIENVGPQDEGLYIC  140 (633)
Q Consensus        79 ~~~~~~~G~~~~L~C~~~-----------~~p~p~i~W~~~~~~i~~~-------~~~~~~~~~L~i~~v~~~d~G~Y~C  140 (633)
                      ....+.+||.+.|.|...           ......+.|+|++..+...       .+....+..|.|.++..+|+|.|+|
T Consensus         8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C   87 (104)
T cd05896           8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTC   87 (104)
T ss_pred             eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEE
Confidence            346789999999999962           1123379999997544321       2445567899999999999999999


Q ss_pred             EEEeCCceEEEEEEEEE
Q psy15127        141 DVENLVGSISLRASLTV  157 (633)
Q Consensus       141 ~~~n~~g~~s~~~~l~V  157 (633)
                      ++.|........+.|+|
T Consensus        88 ~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          88 VLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             EECCCCcceEEEEEEEC
Confidence            99998766666666654

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>smart00410 IG_like Immunoglobulin like

Probab=98.88  E-value=3e-08  Score=76.99  Aligned_cols=80  Identities=36%  Similarity=0.675  Sum_probs=63.7

Q ss_pred             CCceEEEcCCeEEEEEEEeccCCCeEEEEeC-CccCC-CCCeEEccc---ceEEEccCCCCCCeEEEEEEEeCCceEEEE
Q psy15127         78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRD-DGKMP-TGRAKILDD---RSLQIENVGPQDEGLYICDVENLVGSISLR  152 (633)
Q Consensus        78 ~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~-~~~i~-~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~  152 (633)
                      |..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+. .++......   ..|.|.+++..|+|.|.|.+.+..+.....
T Consensus         1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~   80 (86)
T smart00410        1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST   80 (86)
T ss_pred             CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence            3466788999999999998877889999998 77765 333333333   589999999999999999999887776666


Q ss_pred             EEEEE
Q psy15127        153 ASLTV  157 (633)
Q Consensus       153 ~~l~V  157 (633)
                      +.|.|
T Consensus        81 ~~l~V   85 (86)
T smart00410       81 TTLTV   85 (86)
T ss_pred             EEEEE
Confidence            76665

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.88  E-value=3e-08  Score=76.99  Aligned_cols=80  Identities=36%  Similarity=0.675  Sum_probs=63.7

Q ss_pred             CCceEEEcCCeEEEEEEEeccCCCeEEEEeC-CccCC-CCCeEEccc---ceEEEccCCCCCCeEEEEEEEeCCceEEEE
Q psy15127         78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRD-DGKMP-TGRAKILDD---RSLQIENVGPQDEGLYICDVENLVGSISLR  152 (633)
Q Consensus        78 ~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~-~~~i~-~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~  152 (633)
                      |..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+. .++......   ..|.|.+++..|+|.|.|.+.+..+.....
T Consensus         1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~   80 (86)
T smart00409        1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST   80 (86)
T ss_pred             CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence            3466788999999999998877889999998 77765 333333333   589999999999999999999887776666


Q ss_pred             EEEEE
Q psy15127        153 ASLTV  157 (633)
Q Consensus       153 ~~l~V  157 (633)
                      +.|.|
T Consensus        81 ~~l~V   85 (86)
T smart00409       81 TTLTV   85 (86)
T ss_pred             EEEEE
Confidence            76665

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.87  E-value=1.1e-08  Score=79.58  Aligned_cols=77  Identities=19%  Similarity=0.277  Sum_probs=58.6

Q ss_pred             EEecCCceEEEEEEEeee-----cCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127        250 LIWNHPRVNRLSCFAEGS-----PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~-----p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                      ..+..|.++.|.|...+.     |.|.+.|+|++.++...     .+ ....++.|.|.++..+|+|.|+|.|.|..+..
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~-----~~-~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~   78 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGD-----RK-RFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGK   78 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCC-----cc-EEecCCEEEEeeCChhhCEEEEEEEEecCCCE
Confidence            345677899999987542     56899999999887421     11 22266799999999999999999999998877


Q ss_pred             EEEEEEEE
Q psy15127        325 TVRAFLQV  332 (633)
Q Consensus       325 ~~~~~l~v  332 (633)
                      ...+...+
T Consensus        79 ~~~~t~t~   86 (92)
T cd05757          79 QYNVTRTI   86 (92)
T ss_pred             EEEEEEEE
Confidence            65554444

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.87  E-value=6.2e-09  Score=81.00  Aligned_cols=68  Identities=22%  Similarity=0.345  Sum_probs=51.1

Q ss_pred             eEEEcCCeEEEEEEEeccCCCeEEEEeCCccC-C--------------CCCeEEc------ccceEEEccCCCCCCeEEE
Q psy15127         81 ATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-P--------------TGRAKIL------DDRSLQIENVGPQDEGLYI  139 (633)
Q Consensus        81 ~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i-~--------------~~~~~~~------~~~~L~i~~v~~~d~G~Y~  139 (633)
                      +.+.+|++++|.|.+.+.+.+.|.|+++++.. .              .++....      .+..|+|.+++.+|+|.|.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            45789999999999998889999999776322 1              0111111      1246999999999999999


Q ss_pred             EEEEeCCce
Q psy15127        140 CDVENLVGS  148 (633)
Q Consensus       140 C~~~n~~g~  148 (633)
                      |.+.|..+.
T Consensus        82 C~v~~~~~~   90 (94)
T cd07690          82 CEVEDKKEE   90 (94)
T ss_pred             EEECCccce
Confidence            999887654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.85  E-value=1.6e-08  Score=76.49  Aligned_cols=78  Identities=22%  Similarity=0.338  Sum_probs=59.2

Q ss_pred             CceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEE-eCCceEEEEEEEEE
Q psy15127         79 SDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVE-NLVGSISLRASLTV  157 (633)
Q Consensus        79 ~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~-n~~g~~s~~~~l~V  157 (633)
                      .++.+.+|+++.|.|...+. .+.+.|++++..+..+.+.......|.|.+++.+|+|.|.|.+. +++........|.|
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l~v   82 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEEEGFQQLVASYSLNV   82 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEecCCCeEEEEEEEEEE
Confidence            45778999999999998765 66999999999887654455556678899999999999999986 33333334444443

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.85  E-value=7.7e-09  Score=75.23  Aligned_cols=57  Identities=37%  Similarity=0.737  Sum_probs=45.4

Q ss_pred             CCeEEEEEEE-eccCCCeEEEEeCCccCCCCCeEEcc--cc----eEEEccCCCCCCeEEEEEE
Q psy15127         86 GSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILD--DR----SLQIENVGPQDEGLYICDV  142 (633)
Q Consensus        86 G~~~~L~C~~-~~~p~p~i~W~~~~~~i~~~~~~~~~--~~----~L~i~~v~~~d~G~Y~C~~  142 (633)
                      |++++|.|.+ .+.+...++|+|++............  ..    .|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 66778899999999877554332221  11    2999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.84  E-value=3.2e-08  Score=77.39  Aligned_cols=83  Identities=25%  Similarity=0.321  Sum_probs=60.4

Q ss_pred             eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCC-ceeEE
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA-GSTTV  326 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~~~  326 (633)
                      ..+.+..|+++.|.|.+.+ |.+.+.|++++..+..... ...+.... ...|.|.++..+|+|.|+|.|.+.. +....
T Consensus         4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~-~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~   80 (89)
T cd04979           4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEE-PEERLLVT-EDGLLIRSVSPADAGVYTCQSVEHGFKQTLA   80 (89)
T ss_pred             eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccC-cCceEEEc-CCCEEEccCCHHHCEEEEEEEecCccceeEe
Confidence            3456678999999999987 8889999999986542111 01233332 3469999999999999999998654 45566


Q ss_pred             EEEEEEE
Q psy15127        327 RAFLQVR  333 (633)
Q Consensus       327 ~~~l~v~  333 (633)
                      +..|.|.
T Consensus        81 ~~~l~V~   87 (89)
T cd04979          81 TYSLNVL   87 (89)
T ss_pred             EEEEEEe
Confidence            6777665

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.80  E-value=2.9e-08  Score=76.60  Aligned_cols=79  Identities=20%  Similarity=0.201  Sum_probs=57.4

Q ss_pred             CceEEEEEEEeeecC--CeeEEEECCEEEEeccCCccceE----EEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127        255 PRVNRLSCFAEGSPL--PSVFWTQEGSQVLMFPGNAYGHL----HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  328 (633)
Q Consensus       255 g~~~~l~C~~~g~p~--~~v~W~~~g~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  328 (633)
                      |+++.|.|.+.+.+.  ..+.|.+++............+.    .....+.|.|.+++..|+|.|+|.|.|..|....++
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            678999999988765  47899988764321110010000    111345899999999999999999999999988888


Q ss_pred             EEEEE
Q psy15127        329 FLQVR  333 (633)
Q Consensus       329 ~l~v~  333 (633)
                      .|.|.
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            88875

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>KOG0196|consensus

Probab=98.77  E-value=2.9e-07  Score=94.93  Aligned_cols=137  Identities=26%  Similarity=0.385  Sum_probs=101.3

Q ss_pred             CCceEEecccccCCEEEEEEEEcCCccee----EEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeC
Q psy15127        356 DLRRIACDLRETDSGLYTCTASSESGETS----WSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWG  431 (633)
Q Consensus       356 ~~~~~i~~~~~~d~g~y~c~a~n~~g~~~----~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~  431 (633)
                      .....+.+|.....|+|...|.|.+..-+    ..+.+.|.....            .|++...++....+.+++.|+|.
T Consensus       397 ~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa------------~ps~V~~~r~~~~~~~sitlsW~  464 (996)
T KOG0196|consen  397 ETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQA------------APSPVSVLRQVSRTSDSITLSWS  464 (996)
T ss_pred             cceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeecccc------------CCCccceEEEeeeccCceEEecC
Confidence            34558899999999999999999775432    223333332211            23444556777888999999999


Q ss_pred             CCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCceeecCC
Q psy15127        432 EPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGL  509 (633)
Q Consensus       432 ~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~  509 (633)
                      .|...   ++.|..|+|+|+..+... ..........+..+|.+|.|++.|.|+|+|...+|.|++|.... ++|...
T Consensus       465 ~p~~p---ng~ildYEvky~ek~~~e-~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~-fqT~~~  537 (996)
T KOG0196|consen  465 EPDQP---NGVILDYEVKYYEKDEDE-RSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHE-FQTLPS  537 (996)
T ss_pred             CCCCC---CCcceeEEEEEeeccccc-cceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCcee-eeecCc
Confidence            99865   578999999999886422 22223444567899999999999999999999999999998774 666553

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.77  E-value=2.2e-08  Score=76.67  Aligned_cols=64  Identities=17%  Similarity=0.223  Sum_probs=52.2

Q ss_pred             EecCCceEEEEEEEee-ecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127        251 IWNHPRVNRLSCFAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       251 ~~~~g~~~~l~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                      .+.+|+.++|.|.+.+ .+.+.+.|+|+|..+..          ......|.|.+++.+|+|.|+|.+.+..|..
T Consensus        10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~----------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~   74 (83)
T cd05753          10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY----------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDY   74 (83)
T ss_pred             eecCCCCEEEEeeCCCCCcceEEEEEECCeEccc----------cCCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence            5778999999999854 56678999999976531          1134589999999999999999999998754

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.76  E-value=5.9e-08  Score=77.28  Aligned_cols=81  Identities=22%  Similarity=0.246  Sum_probs=58.4

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCcc-----C---------------CCCCeEEcccceEEEccCCCCCC
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK-----M---------------PTGRAKILDDRSLQIENVGPQDE  135 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~-----i---------------~~~~~~~~~~~~L~i~~v~~~d~  135 (633)
                      .++....+.+|+++.|.|.........+.|+|....     +               ..+|..+..+++|.|.+++.+|+
T Consensus         3 ie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~   82 (105)
T cd05774           3 IELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDT   82 (105)
T ss_pred             EeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccC
Confidence            445566688999999999754333348999996321     1               13455566778999999999999


Q ss_pred             eEEEEEEEeCCc-eEEEEEEEE
Q psy15127        136 GLYICDVENLVG-SISLRASLT  156 (633)
Q Consensus       136 G~Y~C~~~n~~g-~~s~~~~l~  156 (633)
                      |.|+|.+.+... .....+.|.
T Consensus        83 G~Y~~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          83 GFYTLQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             EEEEEEEEeCCccEEEEEEEEE
Confidence            999999998763 345555554

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.76  E-value=3.8e-08  Score=71.19  Aligned_cols=63  Identities=32%  Similarity=0.578  Sum_probs=51.5

Q ss_pred             CCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127        254 HPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG  322 (633)
Q Consensus       254 ~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  322 (633)
                      +|+++.|.|.+.+.|.+.+.|++++..+.      ...........|.|.++..+|.|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~------~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP------ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECC------CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            46889999999999999999999988764      1222334556899999999999999999998765

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.76  E-value=4.3e-08  Score=73.08  Aligned_cols=60  Identities=17%  Similarity=0.313  Sum_probs=48.1

Q ss_pred             EEEEEEEe-ccCCCeEEEEeCCccCCCCC------eEEcccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         89 VEFVCRVG-GDPLPTILWRRDDGKMPTGR------AKILDDRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        89 ~~L~C~~~-~~p~p~i~W~~~~~~i~~~~------~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      +.|.|... +.|.+.|+|||++.+|....      ......+.|.|.....+|.+.|+|+|.|..+.
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~   68 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV   68 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence            68999985 68999999999999985421      11122357999999999999999999998765

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.75  E-value=1.1e-07  Score=73.75  Aligned_cols=80  Identities=18%  Similarity=0.233  Sum_probs=65.7

Q ss_pred             CceEEEcCCeEEEEEEEeccCCCe-EEEEeCCccCCCC---CeEEcc------cceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         79 SDATVLSGSVVEFVCRVGGDPLPT-ILWRRDDGKMPTG---RAKILD------DRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        79 ~~~~~~~G~~~~L~C~~~~~p~p~-i~W~~~~~~i~~~---~~~~~~------~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      ..+.+.+|+.+.|.|.+.+.|+|. +.|.+++..+...   ......      .+.|.|..+..+|+|.|+|.|.|....
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~   90 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence            356799999999999999999997 9999998865322   111111      157999999999999999999999999


Q ss_pred             EEEEEEEEEE
Q psy15127        149 ISLRASLTVH  158 (633)
Q Consensus       149 ~s~~~~l~V~  158 (633)
                      .+..+.|.|.
T Consensus        91 ~s~tF~l~v~  100 (101)
T cd05860          91 ASVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEEe
Confidence            9999988875

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.74  E-value=8e-08  Score=74.85  Aligned_cols=83  Identities=25%  Similarity=0.319  Sum_probs=58.2

Q ss_pred             eEEecCCceEEEEEEEeeecCCeeEEEECCE--EEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEE-eCCceeE
Q psy15127        249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQEGS--QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL-SVAGSTT  325 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~-n~~g~~~  325 (633)
                      .+...+|+.+.|.|.. +.|.+.+.|++.+.  ...... ....+... ..+.|.|.++..+|+|.|+|.|. |..+...
T Consensus         5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~-~~~~r~~~-~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~   81 (91)
T cd05871           5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEV-KTEERLIH-TERGLLLRSLQRSDAGVYTCTAVEHSFSQTL   81 (91)
T ss_pred             EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccc-cccccEEE-ecCeEEEeeCChhHCEEEEEEEEccCCeEEE
Confidence            3456678999999996 58889999998432  211000 01123333 34579999999999999999997 5777677


Q ss_pred             EEEEEEEEe
Q psy15127        326 VRAFLQVRE  334 (633)
Q Consensus       326 ~~~~l~v~~  334 (633)
                      ..+.|.|..
T Consensus        82 ~~~~l~v~~   90 (91)
T cd05871          82 AKYTLHVIE   90 (91)
T ss_pred             EEEEEEEec
Confidence            777777753

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.72  E-value=2.9e-08  Score=76.94  Aligned_cols=74  Identities=18%  Similarity=0.139  Sum_probs=57.6

Q ss_pred             eEEecCCceEEEEEEE-eeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127        249 LLIWNHPRVNRLSCFA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                      ...+.+|+.+.|.|.. .|.|.+.+.|++++..+...  ....++....+|.|.|.+++..|+|.|+|.|.|.....
T Consensus        12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~--~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIP--EDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccc--cCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            3556779999999976 78899999999998754321  12234444458999999999999999999999986544

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.72  E-value=3.8e-08  Score=76.12  Aligned_cols=73  Identities=14%  Similarity=0.226  Sum_probs=61.4

Q ss_pred             ceeEEecCCceEEEEEE-EeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCe-EEEEEEEeCCce
Q psy15127        247 ASLLIWNHPRVNRLSCF-AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAG-FFVCSALSVAGS  323 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~-~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~  323 (633)
                      ...+.+.+|+.+.|.|. ..|.|.|.+.|.+++....    ....|+.+..+|.|.|.++...|.| .|.|.|.|....
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i----~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~   84 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHI----TQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLR   84 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccc----cccccEEECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence            45577889999999997 6999999999998775532    1347888888999999999999999 899999997643

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.70  E-value=1.6e-07  Score=74.47  Aligned_cols=84  Identities=19%  Similarity=0.305  Sum_probs=57.5

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccC---CccceEEEc----cCceEEEcCCCCCCCeEEEEEEEe
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPG---NAYGHLHVT----QEGTLRIQGVQKEDAGFFVCSALS  319 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~---~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n  319 (633)
                      ...+.+..|++++|.|.+.+.+.+.+.|++.+..+.....   ....++...    ....|.|.+++.+|+|.|+|.+.+
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   83 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT   83 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence            3456678899999999999988899999864432211110   112344331    234799999999999999999987


Q ss_pred             CCceeEEEEEEE
Q psy15127        320 VAGSTTVRAFLQ  331 (633)
Q Consensus       320 ~~g~~~~~~~l~  331 (633)
                      ... .+..+.|.
T Consensus        84 ~~~-~~~~~~~~   94 (95)
T cd05717          84 MPV-QTAKATVT   94 (95)
T ss_pred             CCC-ceEEEEEE
Confidence            653 35555554

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.68  E-value=7.5e-08  Score=71.76  Aligned_cols=67  Identities=18%  Similarity=0.320  Sum_probs=49.1

Q ss_pred             EEEEEEE-eeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127        258 NRLSCFA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       258 ~~l~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                      ++|+|.+ .|+|++++.|+++++++................+.|.|.....+|++.|+|+|.|..+..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            6899998 467889999999999885321111111122234579999999999999999999988654

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.67  E-value=7.5e-08  Score=75.35  Aligned_cols=73  Identities=19%  Similarity=0.240  Sum_probs=56.2

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCe-EEcccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRA-KILDDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      +|.+...|.. .+.+|++++|.|... .+...+.|+|+|........ .......|.|.+|+.+|+|.|+|.+.+.
T Consensus         2 kP~L~a~p~~-vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           2 KPSLWAEPSS-VVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CCEEEecCCC-ccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            5777777754 689999999999875 56778999999886543211 1112357999999999999999999875

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.64  E-value=3.5e-07  Score=71.16  Aligned_cols=67  Identities=25%  Similarity=0.462  Sum_probs=51.4

Q ss_pred             CceEEEcCCeEEEEEEEeccCCCeEEEEeCCcc---------CCCCCeEEcc----cceEEEccCCCCCCeEEEEEEEeC
Q psy15127         79 SDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK---------MPTGRAKILD----DRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        79 ~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~---------i~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      +++.+.+|++++|.|.+.+.....++|++.+..         ..+.|+....    ..+|+|.+++.+|+|.|.|.+...
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            467899999999999998776667888876643         2234444332    236999999999999999999753

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.59  E-value=5.2e-08  Score=73.49  Aligned_cols=72  Identities=32%  Similarity=0.565  Sum_probs=51.5

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccC-CCeEEEEeCCccC--CCCCeEEcccceEEEccCCCCCCeEEEEEEEe
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDP-LPTILWRRDDGKM--PTGRAKILDDRSLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p-~p~i~W~~~~~~i--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                      +|.|...+.......+. ++|.|.+.+.+ .+.++|+ +....  ..........+.|.|.++..+|.|.|+|.|.|
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            57777777776554444 99999998876 7789999 11111  11122223356899999999999999999986

...

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.57  E-value=5.6e-07  Score=68.76  Aligned_cols=71  Identities=28%  Similarity=0.465  Sum_probs=55.4

Q ss_pred             EEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCc-eeEEEE
Q psy15127        250 LIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG-STTVRA  328 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~  328 (633)
                      ..+..|+.++|.|.+.+.|.+.+.|++++..+..            ....+.+..+..+|.|.|+|.+.+..+ ..+..+
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~------------~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~   76 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINS------------SQNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSV   76 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEE------------ESSEEEESSEEGGGTEEEEEEEEETTEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeee------------eeeeeeeeeeccccCEEEEEEEEeCCCCeEeeeE
Confidence            3467799999999999999999999999977641            111277888999999999999999664 345555


Q ss_pred             EEEE
Q psy15127        329 FLQV  332 (633)
Q Consensus       329 ~l~v  332 (633)
                      .|.|
T Consensus        77 ~v~V   80 (80)
T PF13895_consen   77 NVTV   80 (80)
T ss_dssp             EEEE
T ss_pred             EeeC
Confidence            5543

...

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.57  E-value=7.4e-07  Score=69.09  Aligned_cols=85  Identities=14%  Similarity=0.133  Sum_probs=65.9

Q ss_pred             eeEEecCCceEEEEEEEeeecCCe-eEEEECCEEEEeccCCccceEEEc----cCceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPS-VFWTQEGSQVLMFPGNAYGHLHVT----QEGTLRIQGVQKEDAGFFVCSALSVAG  322 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~-v~W~~~g~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g  322 (633)
                      ..+.+..|+++.|.|.+.++|+|+ +.|.+++..+...... .......    -.+.|.+..+..+|.|.|+|.|.|..+
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~-~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~   89 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDH-YVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA   89 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccc-eeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence            456788999999999999999997 9999998765432221 1111111    124799999999999999999999999


Q ss_pred             eeEEEEEEEEE
Q psy15127        323 STTVRAFLQVR  333 (633)
Q Consensus       323 ~~~~~~~l~v~  333 (633)
                      ..+.++.|.|.
T Consensus        90 ~~s~tF~l~v~  100 (101)
T cd05860          90 SASVTFNVYVN  100 (101)
T ss_pred             eEEEEEEEEEe
Confidence            99999888875

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>PHA03376 BARF1; Provisional

Probab=98.56  E-value=5.5e-07  Score=76.31  Aligned_cols=112  Identities=18%  Similarity=0.283  Sum_probs=73.1

Q ss_pred             ceEEEcCCeEEEEEEEe---ccCCCeEEEEeCCc---cC-----C--------C--CCeEE---cccceEEEccCCCCCC
Q psy15127         80 DATVLSGSVVEFVCRVG---GDPLPTILWRRDDG---KM-----P--------T--GRAKI---LDDRSLQIENVGPQDE  135 (633)
Q Consensus        80 ~~~~~~G~~~~L~C~~~---~~p~p~i~W~~~~~---~i-----~--------~--~~~~~---~~~~~L~i~~v~~~d~  135 (633)
                      .+.+..||.+.|.|.-.   ..+...|.|+|.+.   .+     .        .  ++..+   ..+-+|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            45678899999999875   12344799999532   11     0        0  11112   1234799999999999


Q ss_pred             eEEEEEEEeCCceEEEEEE--------EEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCE
Q psy15127        136 GLYICDVENLVGSISLRAS--------LTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ  201 (633)
Q Consensus       136 G~Y~C~~~n~~g~~s~~~~--------l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~  201 (633)
                      |.|+|.++......-+.-.        |.|......|..         -+...+.|. +.|.|.|.+.|..+..
T Consensus       100 GtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~---------~~~~~i~C~-sggfP~P~~~Wle~~~  163 (221)
T PHA03376        100 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPD---------FSVLTVTCT-VNAFPHPHVQWLMPEG  163 (221)
T ss_pred             ceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCC---------CCeeEEEEe-cCCcCCchheeccccC
Confidence            9999999865433322222        344432112221         456789999 8999999999997644

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.55  E-value=4e-07  Score=71.75  Aligned_cols=71  Identities=25%  Similarity=0.362  Sum_probs=51.9

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCccCC-------------------CCCeEEcccceEEEccCCCCCCeEEEEEEEeCC
Q psy15127         86 GSVVEFVCRVGGDPLPTILWRRDDGKMP-------------------TGRAKILDDRSLQIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus        86 G~~~~L~C~~~~~p~p~i~W~~~~~~i~-------------------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      |++|+|.|.........|.|+|+.....                   .++.....+++|.|.+++.+|+|.|+|.+....
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~   80 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN   80 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence            7899999988765556899999764321                   123334456789999999999999999998765


Q ss_pred             ce-EEEEEEEE
Q psy15127        147 GS-ISLRASLT  156 (633)
Q Consensus       147 g~-~s~~~~l~  156 (633)
                      +. ....+.|.
T Consensus        81 ~~~~~~~~~l~   91 (92)
T cd05741          81 GVTENAKFFLR   91 (92)
T ss_pred             CcEEEEEEEEE
Confidence            43 45555444

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.54  E-value=2.9e-07  Score=71.70  Aligned_cols=75  Identities=13%  Similarity=0.239  Sum_probs=52.1

Q ss_pred             EEecCCceEEEEEEEeeecCCeeEEEECCEEEEec---------cCCccceEEE------ccCceEEEcCCCCCCCeEEE
Q psy15127        250 LIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMF---------PGNAYGHLHV------TQEGTLRIQGVQKEDAGFFV  314 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~---------~~~~~~~~~~------~~~~~l~i~~~~~~d~G~Y~  314 (633)
                      +....|++++|.|.+.+.+.+.+.|++++......         ......++..      ....+|+|.++..+|+|.|.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            34567899999999999999999999776332100         0001111111      11236999999999999999


Q ss_pred             EEEEeCCcee
Q psy15127        315 CSALSVAGST  324 (633)
Q Consensus       315 C~a~n~~g~~  324 (633)
                      |.+.|..+..
T Consensus        82 C~v~~~~~~~   91 (94)
T cd07690          82 CEVEDKKEEV   91 (94)
T ss_pred             EEECCccceE
Confidence            9999876653

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.54  E-value=1.5e-07  Score=68.34  Aligned_cols=58  Identities=24%  Similarity=0.457  Sum_probs=42.5

Q ss_pred             CceEEEEEEE-eeecCCeeEEEECCEEEEeccCCccceEEEc-cCc----eEEEcCCCCCCCeEEEEEE
Q psy15127        255 PRVNRLSCFA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT-QEG----TLRIQGVQKEDAGFFVCSA  317 (633)
Q Consensus       255 g~~~~l~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~-~~~----~l~i~~~~~~d~G~Y~C~a  317 (633)
                      |++++|.|.+ .+.++..+.|++++......     ...... ...    .|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEG-----STTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEE-----EEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCc-----ceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            6899999999 66777899999998643211     111111 111    2999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.53  E-value=4e-07  Score=70.73  Aligned_cols=70  Identities=14%  Similarity=0.206  Sum_probs=51.4

Q ss_pred             EecCCceEEEEEEE-ee----ecCCeeEEEECCEEEEeccCCccceEEE-ccCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127        251 IWNHPRVNRLSCFA-EG----SPLPSVFWTQEGSQVLMFPGNAYGHLHV-TQEGTLRIQGVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       251 ~~~~g~~~~l~C~~-~g----~p~~~v~W~~~g~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                      .+..|.+..|.|.- .+    ++.+.++|+||+.++...    ..+... .....|.|.++..+|+|.|+|.+.+..|..
T Consensus         6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~----~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~   81 (95)
T cd05897           6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKD----NEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGK   81 (95)
T ss_pred             EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCC----CcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence            34556788999973 23    466799999999876421    122222 234579999999999999999999998665

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.53  E-value=1.5e-06  Score=69.34  Aligned_cols=43  Identities=26%  Similarity=0.458  Sum_probs=34.2

Q ss_pred             cceEEEccCceEEEcCCCCCCCeEEEEEEEeCC-ceeEEEEEEE
Q psy15127        289 YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA-GSTTVRAFLQ  331 (633)
Q Consensus       289 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~~~~~~l~  331 (633)
                      .+|..+..+++|.|.+++..|+|.|+|.+.+.. ...+....|.
T Consensus        61 ~gR~~~~~ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          61 SGRETIYPNGSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             CCcEEEeCCCcEEEecCCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence            356677788999999999999999999999877 3445555544

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.53  E-value=4.2e-07  Score=74.26  Aligned_cols=71  Identities=21%  Similarity=0.368  Sum_probs=53.9

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCcc---------------CCCCCeEEcc-----cceEEEccCCCCCC
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK---------------MPTGRAKILD-----DRSLQIENVGPQDE  135 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~---------------i~~~~~~~~~-----~~~L~i~~v~~~d~  135 (633)
                      ..|..+.+.+|++++|.|.+.+.+...+.|+|....               ...+++....     ...|.|.+++.+|+
T Consensus         3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds   82 (109)
T cd04983           3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS   82 (109)
T ss_pred             ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC
Confidence            456788899999999999998767778999985421               0123333322     35799999999999


Q ss_pred             eEEEEEEEeCC
Q psy15127        136 GLYICDVENLV  146 (633)
Q Consensus       136 G~Y~C~~~n~~  146 (633)
                      |.|.|.+.+..
T Consensus        83 G~Y~C~~~~~~   93 (109)
T cd04983          83 AVYFCALSESG   93 (109)
T ss_pred             EEEEEEEecCC
Confidence            99999998653

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.53  E-value=3.9e-07  Score=69.88  Aligned_cols=68  Identities=21%  Similarity=0.387  Sum_probs=48.9

Q ss_pred             EEEEEEEec-cCCCeEEEEeCCccCCCCCeE--Ecc-------cceEEEccCCCCCCeEEEEEEEeCCce--EEEEEEEE
Q psy15127         89 VEFVCRVGG-DPLPTILWRRDDGKMPTGRAK--ILD-------DRSLQIENVGPQDEGLYICDVENLVGS--ISLRASLT  156 (633)
Q Consensus        89 ~~L~C~~~~-~p~p~i~W~~~~~~i~~~~~~--~~~-------~~~L~i~~v~~~d~G~Y~C~~~n~~g~--~s~~~~l~  156 (633)
                      +.|.|.+.| .|.+.|+|+|+|.++......  ...       .+.|.|.....+|.|.|+|.|.|....  ..+.+.|.
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~   81 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTLD   81 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEc
Confidence            689999986 688899999999987543211  111       246888888888999999999987544  34444443

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.50  E-value=6.9e-07  Score=69.45  Aligned_cols=83  Identities=14%  Similarity=0.167  Sum_probs=58.8

Q ss_pred             eEEecCCceEEEEEEEe-----------eecCCeeEEEECCEEEEeccCCcc--ceEEEccCceEEEcCCCCCCCeEEEE
Q psy15127        249 LLIWNHPRVNRLSCFAE-----------GSPLPSVFWTQEGSQVLMFPGNAY--GHLHVTQEGTLRIQGVQKEDAGFFVC  315 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~-----------g~p~~~v~W~~~g~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C  315 (633)
                      ...+.+|+.+.|.|...           ......++|+|++..+.......+  .|+.. .+..|.|.++..+|+|.|+|
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~-~~~~Lwf~Pa~~eDSG~Y~C   87 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSK-EEDSIWFRPAELQDSGLYTC   87 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEE-eCCEEEEEeCChhhCeEEEE
Confidence            35567899999999962           112348999999755432221111  24333 45589999999999999999


Q ss_pred             EEEeCCceeEEEEEEEE
Q psy15127        316 SALSVAGSTTVRAFLQV  332 (633)
Q Consensus       316 ~a~n~~g~~~~~~~l~v  332 (633)
                      .+.|.......++.|+|
T Consensus        88 ~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          88 VLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             EECCCCcceEEEEEEEC
Confidence            99999877777776653

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.49  E-value=6.1e-07  Score=73.27  Aligned_cols=70  Identities=23%  Similarity=0.405  Sum_probs=52.3

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCc--cC-----------------CCCCeEEc----ccceEEEccCC
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG--KM-----------------PTGRAKIL----DDRSLQIENVG  131 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~--~i-----------------~~~~~~~~----~~~~L~i~~v~  131 (633)
                      ...|..+.+.+|++++|.|.+.+ +...+.|||...  ..                 ..+++...    ...+|.|.+++
T Consensus         2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~   80 (110)
T cd05899           2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAE   80 (110)
T ss_pred             EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCC
Confidence            35677889999999999999987 667899999642  11                 01222221    13579999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy15127        132 PQDEGLYICDVENL  145 (633)
Q Consensus       132 ~~d~G~Y~C~~~n~  145 (633)
                      .+|+|.|.|.+.+.
T Consensus        81 ~~Dsg~Y~Ca~~~~   94 (110)
T cd05899          81 PEDSAVYLCASSLG   94 (110)
T ss_pred             hhhCEEEEEEeeCC
Confidence            99999999998764

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.49  E-value=1.1e-06  Score=70.91  Aligned_cols=75  Identities=21%  Similarity=0.305  Sum_probs=54.3

Q ss_pred             cCCeEEEEEEEeccC------------CCeEEEEeCC--ccC------------C---CCCeEEc------ccceEEEcc
Q psy15127         85 SGSVVEFVCRVGGDP------------LPTILWRRDD--GKM------------P---TGRAKIL------DDRSLQIEN  129 (633)
Q Consensus        85 ~G~~~~L~C~~~~~p------------~p~i~W~~~~--~~i------------~---~~~~~~~------~~~~L~i~~  129 (633)
                      .|++++|.|......            .+.|.|+|..  ...            .   .+|..+.      .+.+|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            489999999986432            3589999852  111            0   1233332      356899999


Q ss_pred             CCCCCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy15127        130 VGPQDEGLYICDVENLVGSISLRASLTVHL  159 (633)
Q Consensus       130 v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~  159 (633)
                      ++.+|+|.|.|.+.......+..+.|.|..
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            999999999999997766677777777764

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.49  E-value=1e-06  Score=71.69  Aligned_cols=72  Identities=22%  Similarity=0.303  Sum_probs=51.3

Q ss_pred             CCCceEEEcCCeEEEEEEEecc----CCCeEEEEe---------------CCccCC--C----CCeEE-----cccceEE
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGD----PLPTILWRR---------------DDGKMP--T----GRAKI-----LDDRSLQ  126 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~----p~p~i~W~~---------------~~~~i~--~----~~~~~-----~~~~~L~  126 (633)
                      .+..+.+..|+.++|.|.+...    +...|.|.+               +|....  .    +|...     ..+.+|.
T Consensus         4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~   83 (116)
T cd05879           4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV   83 (116)
T ss_pred             ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence            3567789999999999999653    235799933               333221  1    23322     2346899


Q ss_pred             EccCCCCCCeEEEEEEEeCCce
Q psy15127        127 IENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus       127 i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      |.+++.+|+|.|+|.+.|..+.
T Consensus        84 I~nv~~sD~G~Y~C~v~n~p~~  105 (116)
T cd05879          84 IHNLDYTDNGTFTCDVKNPPDI  105 (116)
T ss_pred             EccCCcccCEEEEEEEEcCCCc
Confidence            9999999999999999987543

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>smart00410 IG_like Immunoglobulin like

Probab=98.47  E-value=2.2e-06  Score=66.20  Aligned_cols=78  Identities=32%  Similarity=0.569  Sum_probs=59.7

Q ss_pred             EEecCCceEEEEEEEeeecCCeeEEEEC-CEEEEeccCCccceEEEcc---CceEEEcCCCCCCCeEEEEEEEeCCceeE
Q psy15127        250 LIWNHPRVNRLSCFAEGSPLPSVFWTQE-GSQVLMFPGNAYGHLHVTQ---EGTLRIQGVQKEDAGFFVCSALSVAGSTT  325 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~-g~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  325 (633)
                      ..+..|+.+.|.|.+.+.+.+.+.|+++ +..+.  ..   .+.....   ...|.|.++...|+|.|.|.+.+..+...
T Consensus         4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~--~~---~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~   78 (86)
T smart00410        4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA--ES---GRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSAS   78 (86)
T ss_pred             EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC--CC---CcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence            3456789999999999988889999998 66553  11   2222222   25899999999999999999998888776


Q ss_pred             EEEEEEE
Q psy15127        326 VRAFLQV  332 (633)
Q Consensus       326 ~~~~l~v  332 (633)
                      ..+.|.|
T Consensus        79 ~~~~l~V   85 (86)
T smart00410       79 STTTLTV   85 (86)
T ss_pred             EEEEEEE
Confidence            6666654

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.47  E-value=2.2e-06  Score=66.20  Aligned_cols=78  Identities=32%  Similarity=0.569  Sum_probs=59.7

Q ss_pred             EEecCCceEEEEEEEeeecCCeeEEEEC-CEEEEeccCCccceEEEcc---CceEEEcCCCCCCCeEEEEEEEeCCceeE
Q psy15127        250 LIWNHPRVNRLSCFAEGSPLPSVFWTQE-GSQVLMFPGNAYGHLHVTQ---EGTLRIQGVQKEDAGFFVCSALSVAGSTT  325 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~-g~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  325 (633)
                      ..+..|+.+.|.|.+.+.+.+.+.|+++ +..+.  ..   .+.....   ...|.|.++...|+|.|.|.+.+..+...
T Consensus         4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~--~~---~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~   78 (86)
T smart00409        4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA--ES---GRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSAS   78 (86)
T ss_pred             EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC--CC---CcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence            3456789999999999988889999998 66553  11   2222222   25899999999999999999998888776


Q ss_pred             EEEEEEE
Q psy15127        326 VRAFLQV  332 (633)
Q Consensus       326 ~~~~l~v  332 (633)
                      ..+.|.|
T Consensus        79 ~~~~l~V   85 (86)
T smart00409       79 STTTLTV   85 (86)
T ss_pred             EEEEEEE
Confidence            6666654

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.45  E-value=1.5e-06  Score=70.38  Aligned_cols=75  Identities=28%  Similarity=0.449  Sum_probs=55.0

Q ss_pred             cCCeEEEEEEEeccC------CCeEEEEeCC---c-c--C---CCC----------CeEE----cccceEEEccCCCCCC
Q psy15127         85 SGSVVEFVCRVGGDP------LPTILWRRDD---G-K--M---PTG----------RAKI----LDDRSLQIENVGPQDE  135 (633)
Q Consensus        85 ~G~~~~L~C~~~~~p------~p~i~W~~~~---~-~--i---~~~----------~~~~----~~~~~L~i~~v~~~d~  135 (633)
                      .|++++|.|.....+      ...|.|+|..   . .  +   ..+          +...    ..+.+|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            489999999987543      4589999972   1 0  1   011          1111    1246899999999999


Q ss_pred             eEEEEEEEeCCceEEEEEEEEEEe
Q psy15127        136 GLYICDVENLVGSISLRASLTVHL  159 (633)
Q Consensus       136 G~Y~C~~~n~~g~~s~~~~l~V~~  159 (633)
                      |.|.|.+.+..+..+..+.|.|.+
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999998877778888888875

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.45  E-value=1.7e-06  Score=70.10  Aligned_cols=75  Identities=25%  Similarity=0.420  Sum_probs=55.5

Q ss_pred             cCCeEEEEEEEeccC------CCeEEEEeCCcc--------CC-----------CCCeEEcc----cceEEEccCCCCCC
Q psy15127         85 SGSVVEFVCRVGGDP------LPTILWRRDDGK--------MP-----------TGRAKILD----DRSLQIENVGPQDE  135 (633)
Q Consensus        85 ~G~~~~L~C~~~~~p------~p~i~W~~~~~~--------i~-----------~~~~~~~~----~~~L~i~~v~~~d~  135 (633)
                      .|++++|.|.....|      ...|.|+|....        +.           .++.....    +.+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            489999999986542      346999996421        00           12223221    34799999999999


Q ss_pred             eEEEEEEEeCCceEEEEEEEEEEe
Q psy15127        136 GLYICDVENLVGSISLRASLTVHL  159 (633)
Q Consensus       136 G~Y~C~~~n~~g~~s~~~~l~V~~  159 (633)
                      |.|.|.+.+..+.....+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEEE
Confidence            999999999888888888888875

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>KOG4802|consensus

Probab=98.44  E-value=2.3e-06  Score=81.16  Aligned_cols=176  Identities=16%  Similarity=0.144  Sum_probs=103.7

Q ss_pred             EEeeCCeEEEEeCCCCCCCCCCcceeEEEEE----EE-----EecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEE
Q psy15127        419 LNTTRGSVTLGWGEPEPRGGGVAPVIGYTVE----YF-----SSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAE  489 (633)
Q Consensus       419 ~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~----~~-----~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~  489 (633)
                      ......++.+.|......     .+....+.    |.     .+.....|+..........+.++++.|+..|+|+++|+
T Consensus       155 ~r~~~g~~av~w~~~~~~-----~v~~~~~~vr~~w~~g~hase~~~thwQtv~~t~~e~~~~~t~~rPgRwyefrvaav  229 (516)
T KOG4802|consen  155 FRRSRGSHAVDWKIESSL-----LVYYVHVEVRSHWGRGFHASELGPTHWQTVEKTMEENTYIFTDMRPGRWYEFRVAAV  229 (516)
T ss_pred             hhhccCceeeeeeecccc-----ceeeeehhhhhhhcccccccccccccceeeeecCCCceeeeeecCcceeEEEEEeee
Confidence            345667788999876622     22222222    11     11123457766555445578899999999999999999


Q ss_pred             eccccCCCCCCCCceeecCC--CCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcc
Q psy15127        490 NSHGLGIPSPVSPITRTLGL--NSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLG  567 (633)
Q Consensus       490 n~~G~g~~s~~~~~~~t~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~  567 (633)
                      |..|.--++.++..+.....  +|.+|.++.          .+   .+.........|.|.|+         ..+-++..
T Consensus       230 n~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~----------l~---~v~~dG~~~~~v~w~P~---------~sdlPv~~  287 (516)
T KOG4802|consen  230 NAYGFRGFSEPSKPFPSSKNPKAPPSPNDLK----------LI---GVQFDGRYMLKVVWCPS---------KSDLPVEK  287 (516)
T ss_pred             ecccccccCCCCCCCCCCCCCCCCcCcccce----------ee---eeeecceEEEEEEeCCC---------CCCCccee
Confidence            99987555555533443333  233332220          11   11122233477888854         45678999


Q ss_pred             eeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccc
Q psy15127        568 TKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGA  630 (633)
Q Consensus       568 y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~  630 (633)
                      | .|.|.-......    .+..+.  .....+.+.++  |.+|.|+..|.|.|.|..-.|.+.
T Consensus       288 Y-ki~Ws~~v~s~k----~~m~tk--s~~~k~thq~s--i~~L~Pns~Y~VevqAi~y~g~~r  341 (516)
T KOG4802|consen  288 Y-KITWSLYVNSAK----ASMITK--SSYVKDTHQFS--IKELLPNSSYYVEVQAISYLGSRR  341 (516)
T ss_pred             e-EEEeehhhhhhh----hhcccc--cceeeccchhh--hhhcCCCCeEEEEEEEEEeccCcc
Confidence            9 888865442210    001111  11222333333  999999999999999999888764

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.40  E-value=2.8e-06  Score=68.95  Aligned_cols=74  Identities=27%  Similarity=0.426  Sum_probs=53.9

Q ss_pred             CCeEEEEEEEeccC----------CCeEEEEeCC--ccC------------C---CCCeEEc------ccceEEEccCCC
Q psy15127         86 GSVVEFVCRVGGDP----------LPTILWRRDD--GKM------------P---TGRAKIL------DDRSLQIENVGP  132 (633)
Q Consensus        86 G~~~~L~C~~~~~p----------~p~i~W~~~~--~~i------------~---~~~~~~~------~~~~L~i~~v~~  132 (633)
                      |++++|.|.....+          ...|.|+|..  ...            .   .+|....      .+.+|+|.+++.
T Consensus         2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~   81 (110)
T cd05878           2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS   81 (110)
T ss_pred             CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence            88999999996543          2569999952  211            0   1233331      235799999999


Q ss_pred             CCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy15127        133 QDEGLYICDVENLVGSISLRASLTVHL  159 (633)
Q Consensus       133 ~d~G~Y~C~~~n~~g~~s~~~~l~V~~  159 (633)
                      +|+|.|.|.+.......++.+.|.|.+
T Consensus        82 sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          82 SDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            999999999988666678888888875

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.36  E-value=3.5e-06  Score=67.46  Aligned_cols=72  Identities=28%  Similarity=0.403  Sum_probs=49.7

Q ss_pred             CCeEEEEEEEeccC---CCeEEEEeCCcc--C---------C-------CCCeEEc------ccceEEEccCCCCCCeEE
Q psy15127         86 GSVVEFVCRVGGDP---LPTILWRRDDGK--M---------P-------TGRAKIL------DDRSLQIENVGPQDEGLY  138 (633)
Q Consensus        86 G~~~~L~C~~~~~p---~p~i~W~~~~~~--i---------~-------~~~~~~~------~~~~L~i~~v~~~d~G~Y  138 (633)
                      |++++|.|......   ...+.|+|....  +         .       .+|....      .+.+|+|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            78999999986322   225888885421  1         0       0222221      125799999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEE
Q psy15127        139 ICDVENLVGSISLRASLTV  157 (633)
Q Consensus       139 ~C~~~n~~g~~s~~~~l~V  157 (633)
                      +|.+.+..+..+..+.|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999987776777777765

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.34  E-value=2.2e-06  Score=67.38  Aligned_cols=71  Identities=23%  Similarity=0.334  Sum_probs=50.8

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC----CeEEcccceEEEccCCCCCCeEEEEEEE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG----RAKILDDRSLQIENVGPQDEGLYICDVE  143 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~----~~~~~~~~~L~i~~v~~~d~G~Y~C~~~  143 (633)
                      +|.+...| ...+.+|++|+|.|.... ..-.+.|+|+|......    .........|.|.+++.+|+|.|.|...
T Consensus         1 kP~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711           1 KPFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CCEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            45665555 556889999999998754 45579999988753211    0001113478999999999999999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.33  E-value=3.8e-06  Score=67.02  Aligned_cols=71  Identities=30%  Similarity=0.575  Sum_probs=50.5

Q ss_pred             CeEEEEEEEeccC---CCeEEEEeCCcc----C-----------C---CCCeEEc----ccceEEEccCCCCCCeEEEEE
Q psy15127         87 SVVEFVCRVGGDP---LPTILWRRDDGK----M-----------P---TGRAKIL----DDRSLQIENVGPQDEGLYICD  141 (633)
Q Consensus        87 ~~~~L~C~~~~~p---~p~i~W~~~~~~----i-----------~---~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~  141 (633)
                      ++++|.|.....+   ...|.|+|....    +           .   .++....    .+.+|+|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            5789999987643   336999996431    0           0   1122222    246899999999999999999


Q ss_pred             EEe-CCceEEEEEEEEE
Q psy15127        142 VEN-LVGSISLRASLTV  157 (633)
Q Consensus       142 ~~n-~~g~~s~~~~l~V  157 (633)
                      +.. ..|...+.+.|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            975 5677788888776

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.31  E-value=3.2e-06  Score=66.58  Aligned_cols=76  Identities=22%  Similarity=0.349  Sum_probs=54.0

Q ss_pred             CceEEEEEEEeeecCCeeEEEECCEEEE-------------eccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCC
Q psy15127        255 PRVNRLSCFAEGSPLPSVFWTQEGSQVL-------------MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA  321 (633)
Q Consensus       255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~-------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  321 (633)
                      |++|+|.|.........+.|++......             .....-..|+....+++|.|.+++.+|+|.|+|.+....
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~   80 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN   80 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence            6889999998776667999998753211             001122356667677899999999999999999998876


Q ss_pred             ce-eEEEEEE
Q psy15127        322 GS-TTVRAFL  330 (633)
Q Consensus       322 g~-~~~~~~l  330 (633)
                      |. ....+.|
T Consensus        81 ~~~~~~~~~l   90 (92)
T cd05741          81 GVTENAKFFL   90 (92)
T ss_pred             CcEEEEEEEE
Confidence            43 3444443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.30  E-value=4e-06  Score=64.23  Aligned_cols=64  Identities=27%  Similarity=0.424  Sum_probs=44.8

Q ss_pred             EEEEEEEee-ecCCeeEEEECCEEEEeccCCccceEEE------ccCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127        258 NRLSCFAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHV------TQEGTLRIQGVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       258 ~~l~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                      +.|.|.+.| .|.+.++|+++|..+...   .......      ...+.|.|.....+|.|.|+|.|.|.....
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~---~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~   72 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGA---TYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPT   72 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCc---eeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCC
Confidence            689999987 688899999999876421   1001111      112367888888888999999999876443

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.28  E-value=2.2e-06  Score=67.87  Aligned_cols=74  Identities=23%  Similarity=0.372  Sum_probs=52.5

Q ss_pred             EcCCeEEEEEEEec-cCCCeEEEEeCCccCC--------------C----CCeEEcc-cceEEEccCCCCCCeEEEEEEE
Q psy15127         84 LSGSVVEFVCRVGG-DPLPTILWRRDDGKMP--------------T----GRAKILD-DRSLQIENVGPQDEGLYICDVE  143 (633)
Q Consensus        84 ~~G~~~~L~C~~~~-~p~p~i~W~~~~~~i~--------------~----~~~~~~~-~~~L~i~~v~~~d~G~Y~C~~~  143 (633)
                      ..|++|+|.|.... .....+.|+|....+.              .    +|..+.. +.+|+|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            46999999998754 3445799998643210              0    1122222 3689999999999999999998


Q ss_pred             eCCce-EEEEEEEEE
Q psy15127        144 NLVGS-ISLRASLTV  157 (633)
Q Consensus       144 n~~g~-~s~~~~l~V  157 (633)
                      +..|. ....+.|.|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            77665 467777766

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>KOG4258|consensus

Probab=98.28  E-value=5.3e-06  Score=86.21  Aligned_cols=129  Identities=16%  Similarity=0.082  Sum_probs=86.2

Q ss_pred             eEEEecCCCCCeEEEEEEEEecccc----CCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEE
Q psy15127        470 SITVSDLKPDTSYMFIVRAENSHGL----GIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRI  545 (633)
Q Consensus       470 ~~~i~~L~p~~~Y~~~v~a~n~~G~----g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v  545 (633)
                      .+.|.+|.+++.|.+.++|.|.++.    +..+..  ..+|+...-.          .+.+++| .|  ...++.+++.|
T Consensus       783 ~~vi~~Lrh~tlY~i~l~aCnh~~~~~~cS~a~~v--~~RT~~~~~a----------D~i~g~v-~w--e~~~~~~~v~l  847 (1025)
T KOG4258|consen  783 SYVISGLRHFTLYRIDLQACNHATPKCGCSHAAFV--FARTMPTMGA----------DDIPGPV-TW--ECHIEMNSVIL  847 (1025)
T ss_pred             hhhhhccccchhhhhhHhhhcccccccccchhhhh--hhcccccccc----------ccCCCce-eE--ecccCcceEEE
Confidence            5678899999999999999999887    322221  2344332110          0112211 11  12237899999


Q ss_pred             EEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEecccc
Q psy15127        546 TWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFK  625 (633)
Q Consensus       546 ~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~  625 (633)
                      +|.+|        ..++|.|.+| .|.|+..+....         ....+-..........+..|.+| .|.++|+|..-
T Consensus       848 ~w~EP--------~~pNGli~~Y-~Vk~r~~~~et~---------v~cvsR~~~~k~~gv~l~~l~~G-~y~~~vratSl  908 (1025)
T KOG4258|consen  848 RWLEP--------KEPNGLILNY-EVKYRRNGDETH---------VECVSRMDYAKAGGVYLKRLNPG-NYSVRVRATSL  908 (1025)
T ss_pred             ecCCC--------CCCCccEEEE-EEEEeeccCcch---------hhhhhhhhhhhcCceEEEecCCC-cEEEEEEEEee
Confidence            99987        7889999999 999997766531         11111112223456788999887 99999999999


Q ss_pred             ccccccC
Q psy15127        626 TVEGARL  632 (633)
Q Consensus       626 ~g~g~~s  632 (633)
                      +|.|++-
T Consensus       909 aGng~~t  915 (1025)
T KOG4258|consen  909 AGNGSWT  915 (1025)
T ss_pred             ccCCCCc
Confidence            9999863

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.28  E-value=1e-05  Score=62.96  Aligned_cols=73  Identities=14%  Similarity=0.194  Sum_probs=52.7

Q ss_pred             eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccC---CccceEEEcc----CceEEEcCCCCCCCeEEEEEEEeC
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPG---NAYGHLHVTQ----EGTLRIQGVQKEDAGFFVCSALSV  320 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~---~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~  320 (633)
                      ..+...+|++++|.|.+.+.....+.|++.+..+.....   ....|+....    ..+|.|.++..+|+|.|.|.+...
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            446678899999999999987778889887754421111   1233444332    226999999999999999999753

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.27  E-value=3.6e-06  Score=68.18  Aligned_cols=72  Identities=19%  Similarity=0.354  Sum_probs=51.6

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccC-CCeEEEEeCC--ccC----------C---CCCeEEcc---cceEEEccCCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDP-LPTILWRRDD--GKM----------P---TGRAKILD---DRSLQIENVGPQD  134 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p-~p~i~W~~~~--~~i----------~---~~~~~~~~---~~~L~i~~v~~~d  134 (633)
                      +...|..+.+.+|++++|.|.+.+.. ...+.|||..  ...          .   ..++....   +..|.|.+++.+|
T Consensus         3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D   82 (106)
T cd04980           3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED   82 (106)
T ss_pred             EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence            45667788999999999999987554 5679999853  211          0   11222211   2469999999999


Q ss_pred             CeEEEEEEEeC
Q psy15127        135 EGLYICDVENL  145 (633)
Q Consensus       135 ~G~Y~C~~~n~  145 (633)
                      +|.|.|.+.+.
T Consensus        83 sg~Y~Ca~~~~   93 (106)
T cd04980          83 AAVYYCQQYGT   93 (106)
T ss_pred             CEEEEEEEeCC
Confidence            99999998643

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.26  E-value=4.4e-06  Score=68.46  Aligned_cols=71  Identities=27%  Similarity=0.525  Sum_probs=49.3

Q ss_pred             CCCceEEEcCCeEEEEEEEeccC----CCeEEEEeC---Ccc---C----------CC----CCeEEc-----ccceEEE
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGDP----LPTILWRRD---DGK---M----------PT----GRAKIL-----DDRSLQI  127 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~p----~p~i~W~~~---~~~---i----------~~----~~~~~~-----~~~~L~i  127 (633)
                      .|..+.+.+|++++|.|.....+    ...|.|++.   +..   +          ..    ++....     .+.+|.|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I   83 (115)
T cd05880           4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI   83 (115)
T ss_pred             cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence            46678899999999999986432    236999752   111   1          01    111111     2457999


Q ss_pred             ccCCCCCCeEEEEEEEeCCc
Q psy15127        128 ENVGPQDEGLYICDVENLVG  147 (633)
Q Consensus       128 ~~v~~~d~G~Y~C~~~n~~g  147 (633)
                      .+++.+|+|.|.|.+.|...
T Consensus        84 ~~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          84 WQLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             eeCChhhCEEEEEEEEeCCC
Confidence            99999999999999997654

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.26  E-value=6.7e-06  Score=62.35  Aligned_cols=76  Identities=21%  Similarity=0.218  Sum_probs=55.1

Q ss_pred             eEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127        249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  328 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  328 (633)
                      ...+..|+++.|.|...+. ...+.|+++|..+.     ...++.....+ |.|..++..|+|.|.|.+. ..|-....+
T Consensus         5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~-----~~~r~~~~~~G-LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~   76 (85)
T cd05872           5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLN-----AQFSYRVGTDG-LLILVTSPEHSGTYRCYSE-EEGFQQLVA   76 (85)
T ss_pred             EEEEecCCCEEEECCCCCC-CccEEEEECCcccC-----CCcceEEeCCC-CEEEECCHhhCEEEEEEEe-cCCCeEEEE
Confidence            4556788999999999776 66999999999863     12344444444 7799999999999999985 445544444


Q ss_pred             EEEE
Q psy15127        329 FLQV  332 (633)
Q Consensus       329 ~l~v  332 (633)
                      .+.+
T Consensus        77 ~y~l   80 (85)
T cd05872          77 SYSL   80 (85)
T ss_pred             EEEE
Confidence            4443

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.25  E-value=1.5e-05  Score=62.80  Aligned_cols=71  Identities=24%  Similarity=0.469  Sum_probs=49.9

Q ss_pred             eEEEEEEEecc-CCC---eEEEEeCC--cc--C---C-----------CCCeEEc----ccceEEEccCCCCCCeEEEEE
Q psy15127         88 VVEFVCRVGGD-PLP---TILWRRDD--GK--M---P-----------TGRAKIL----DDRSLQIENVGPQDEGLYICD  141 (633)
Q Consensus        88 ~~~L~C~~~~~-p~p---~i~W~~~~--~~--i---~-----------~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~  141 (633)
                      .++|.|..... |..   +|.|.+..  ..  +   .           .+|....    .+.+|.|.+++.+|+|.|+|.
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~   81 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE   81 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence            58999999742 211   69998842  11  1   0           1222222    247899999999999999999


Q ss_pred             EEe-CCceEEEEEEEEEE
Q psy15127        142 VEN-LVGSISLRASLTVH  158 (633)
Q Consensus       142 ~~n-~~g~~s~~~~l~V~  158 (633)
                      +.+ ..|..+..+.|.|.
T Consensus        82 v~t~P~g~~~~~~~L~V~   99 (99)
T cd05886          82 FATFPTGNRESQLNLTVY   99 (99)
T ss_pred             EEeCCCCCeEEEEEEEEC
Confidence            999 57778888888773

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.24  E-value=1.6e-05  Score=59.28  Aligned_cols=77  Identities=23%  Similarity=0.395  Sum_probs=55.0

Q ss_pred             ceEEEcCCeEEEEEEEecc--CCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127         80 DATVLSGSVVEFVCRVGGD--PLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV  157 (633)
Q Consensus        80 ~~~~~~G~~~~L~C~~~~~--p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V  157 (633)
                      ...+..|++++|.|.....  |.+.|+|+..+...-.  .....+.+|.+..+...|+|.++|.+..........+.|.|
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~--~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~V   85 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ--ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKV   85 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce--eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEE
Confidence            4468899999999998543  3458999986654321  11124568999999999999999999765444455555555


Q ss_pred             E
Q psy15127        158 H  158 (633)
Q Consensus       158 ~  158 (633)
                      .
T Consensus        86 l   86 (88)
T cd07694          86 L   86 (88)
T ss_pred             E
Confidence            4

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.24  E-value=6.4e-06  Score=67.85  Aligned_cols=83  Identities=30%  Similarity=0.497  Sum_probs=57.5

Q ss_pred             eeCCCceEEEcCCeEEEEEEEe-ccCCCeEEEEeCCc-----cCC---------------CCCeEEcc-----cceEEEc
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVG-GDPLPTILWRRDDG-----KMP---------------TGRAKILD-----DRSLQIE  128 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~-~~p~p~i~W~~~~~-----~i~---------------~~~~~~~~-----~~~L~i~  128 (633)
                      ...|..+.+.+|+++.|.|... ......+.|++...     .+.               .++.....     +.+|.|.
T Consensus         5 t~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~   84 (114)
T PF07686_consen    5 TQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIK   84 (114)
T ss_dssp             EEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEES
T ss_pred             EEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEEC
Confidence            3446788899999999999998 44556899999433     110               11222222     2369999


Q ss_pred             cCCCCCCeEEEEEEEeCC-ceEEEEEEEEE
Q psy15127        129 NVGPQDEGLYICDVENLV-GSISLRASLTV  157 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~n~~-g~~s~~~~l~V  157 (633)
                      +++.+|+|.|.|.+.... ......+.|.|
T Consensus        85 ~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   85 NLQPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             SESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             CCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            999999999999998762 23455555554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.24  E-value=4.1e-06  Score=69.18  Aligned_cols=69  Identities=20%  Similarity=0.346  Sum_probs=50.8

Q ss_pred             eCCCceEEEcCCeEEEEEEEec--cCCCeEEEEeC--CccC------------------CCCCeEEc-----ccceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGG--DPLPTILWRRD--DGKM------------------PTGRAKIL-----DDRSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~--~p~p~i~W~~~--~~~i------------------~~~~~~~~-----~~~~L~i~  128 (633)
                      ..|..+.+.+|++++|.|.+.+  .+.+.+.|||.  +...                  ..+++...     ....|+|.
T Consensus         3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   82 (116)
T cd04982           3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ   82 (116)
T ss_pred             CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence            3567788999999999999976  56778999995  2211                  01233322     12479999


Q ss_pred             cCCCCCCeEEEEEEEe
Q psy15127        129 NVGPQDEGLYICDVEN  144 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~n  144 (633)
                      +++.+|+|.|.|.+..
T Consensus        83 ~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          83 NLEKEDSATYYCAYWE   98 (116)
T ss_pred             ECCHHHCEEEEEEEec
Confidence            9999999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.23  E-value=3.8e-06  Score=68.06  Aligned_cols=66  Identities=27%  Similarity=0.460  Sum_probs=48.5

Q ss_pred             EEEcCCeEEEEEEEecc-CCCeEEEEeCCc--cC----------------CCCCeEEc-----ccceEEEccCCCCCCeE
Q psy15127         82 TVLSGSVVEFVCRVGGD-PLPTILWRRDDG--KM----------------PTGRAKIL-----DDRSLQIENVGPQDEGL  137 (633)
Q Consensus        82 ~~~~G~~~~L~C~~~~~-p~p~i~W~~~~~--~i----------------~~~~~~~~-----~~~~L~i~~v~~~d~G~  137 (633)
                      .+.+|++++|.|.+.+. +...+.|+|...  ..                ..++....     .+.+|+|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            57899999999999875 566899999543  10                01222222     23489999999999999


Q ss_pred             EEEEEEeCCc
Q psy15127        138 YICDVENLVG  147 (633)
Q Consensus       138 Y~C~~~n~~g  147 (633)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999987654

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.23  E-value=1.2e-05  Score=65.18  Aligned_cols=81  Identities=22%  Similarity=0.311  Sum_probs=56.9

Q ss_pred             CCceEEEEEEEeeec------CCeeEEEECC-----E-EEEeccCC------cc-ceEEE----ccCceEEEcCCCCCCC
Q psy15127        254 HPRVNRLSCFAEGSP------LPSVFWTQEG-----S-QVLMFPGN------AY-GHLHV----TQEGTLRIQGVQKEDA  310 (633)
Q Consensus       254 ~g~~~~l~C~~~g~p------~~~v~W~~~g-----~-~~~~~~~~------~~-~~~~~----~~~~~l~i~~~~~~d~  310 (633)
                      .|++++|.|.....+      ...|.|++..     . .+......      .+ .++..    ..+.+|.|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            478999999987764      4689999862     1 11111110      11 12222    1345899999999999


Q ss_pred             eEEEEEEEeCCceeEEEEEEEEEe
Q psy15127        311 GFFVCSALSVAGSTTVRAFLQVRE  334 (633)
Q Consensus       311 G~Y~C~a~n~~g~~~~~~~l~v~~  334 (633)
                      |.|.|.+.+..+..+..+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999999888888888888874

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.21  E-value=1.3e-05  Score=66.00  Aligned_cols=71  Identities=27%  Similarity=0.500  Sum_probs=49.2

Q ss_pred             CCCceEEEcCCeEEEEEEEeccC----CCeEEEEeCCc------cC-----------CCC----CeEEcc-----cceEE
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGDP----LPTILWRRDDG------KM-----------PTG----RAKILD-----DRSLQ  126 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~p----~p~i~W~~~~~------~i-----------~~~----~~~~~~-----~~~L~  126 (633)
                      .|..+.+.+|++++|.|......    ...+.|++...      .+           ..+    |.....     +.+|+
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   83 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV   83 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence            46778899999999999986432    24699987321      00           011    111111     35799


Q ss_pred             EccCCCCCCeEEEEEEEeCCc
Q psy15127        127 IENVGPQDEGLYICDVENLVG  147 (633)
Q Consensus       127 i~~v~~~d~G~Y~C~~~n~~g  147 (633)
                      |.+++.+|+|.|.|.+.+...
T Consensus        84 I~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          84 IHNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             EeeCCcccCEEEEEEEEeCCC
Confidence            999999999999999987643

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.21  E-value=2e-05  Score=63.85  Aligned_cols=81  Identities=25%  Similarity=0.348  Sum_probs=57.6

Q ss_pred             CCceEEEEEEEeeec------CCeeEEEECCE------EEEecc-------CCccceEEEc----cCceEEEcCCCCCCC
Q psy15127        254 HPRVNRLSCFAEGSP------LPSVFWTQEGS------QVLMFP-------GNAYGHLHVT----QEGTLRIQGVQKEDA  310 (633)
Q Consensus       254 ~g~~~~l~C~~~g~p------~~~v~W~~~g~------~~~~~~-------~~~~~~~~~~----~~~~l~i~~~~~~d~  310 (633)
                      +|++++|.|.....|      ...+.|+|...      .+....       ..-..|....    .+.+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            478999999987664      24799998531      111111       0111344442    234799999999999


Q ss_pred             eEEEEEEEeCCceeEEEEEEEEEe
Q psy15127        311 GFFVCSALSVAGSTTVRAFLQVRE  334 (633)
Q Consensus       311 G~Y~C~a~n~~g~~~~~~~l~v~~  334 (633)
                      |.|.|.+.+..+..+..+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEEE
Confidence            999999999999888888888864

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.20  E-value=8.5e-06  Score=65.54  Aligned_cols=74  Identities=24%  Similarity=0.315  Sum_probs=52.9

Q ss_pred             CCeEEEEEEEeccC-------CCeEEEEeCC-----ccC-----C----------CCCeEEc------ccceEEEccCCC
Q psy15127         86 GSVVEFVCRVGGDP-------LPTILWRRDD-----GKM-----P----------TGRAKIL------DDRSLQIENVGP  132 (633)
Q Consensus        86 G~~~~L~C~~~~~p-------~p~i~W~~~~-----~~i-----~----------~~~~~~~------~~~~L~i~~v~~  132 (633)
                      |++++|.|...-.|       .+.|.|.|..     ..+     .          .+|..+.      .+.+|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            78999999975322       3689999852     111     0          1233332      245899999999


Q ss_pred             CCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy15127        133 QDEGLYICDVENLVGSISLRASLTVHL  159 (633)
Q Consensus       133 ~d~G~Y~C~~~n~~g~~s~~~~l~V~~  159 (633)
                      +|+|.|.|.+.......+..+.|.|..
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            999999999998665678888888875

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.17  E-value=1.4e-05  Score=59.93  Aligned_cols=71  Identities=18%  Similarity=0.295  Sum_probs=51.7

Q ss_pred             EEEEEEEec-cCCCeEEEEeCCccCCCCCeE-------EcccceEEEccCCCCCCeEEEEEEEeCCce-EEEEEEEEEEe
Q psy15127         89 VEFVCRVGG-DPLPTILWRRDDGKMPTGRAK-------ILDDRSLQIENVGPQDEGLYICDVENLVGS-ISLRASLTVHL  159 (633)
Q Consensus        89 ~~L~C~~~~-~p~p~i~W~~~~~~i~~~~~~-------~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~s~~~~l~V~~  159 (633)
                      +.|.|.+.| .|.+.|+|+|++.++......       ....++|.|..-..+|...|+|+|.|..-. ......|.|..
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y   81 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY   81 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence            689999964 688899999999988653221       112357888777788888999999886533 45666666653

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.17  E-value=1.3e-05  Score=68.92  Aligned_cols=81  Identities=21%  Similarity=0.330  Sum_probs=60.4

Q ss_pred             ceEEEcCCeEEEEEEEe-ccCCCeEEEEeCCccCC-------------CCCeEEc----ccceEEEccCCCCCCeEEEEE
Q psy15127         80 DATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKMP-------------TGRAKIL----DDRSLQIENVGPQDEGLYICD  141 (633)
Q Consensus        80 ~~~~~~G~~~~L~C~~~-~~p~p~i~W~~~~~~i~-------------~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~  141 (633)
                      .+.+.+|++++|.|... +...+.+.|+|..+.+.             .+|....    .+..|+|.+|+.+|+|.|.|.
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~  103 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI  103 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence            46789999999999984 55677899999754331             1222221    346899999999999999999


Q ss_pred             EEeC-Cc-eEEEEEEEEEEee
Q psy15127        142 VENL-VG-SISLRASLTVHLL  160 (633)
Q Consensus       142 ~~n~-~g-~~s~~~~l~V~~~  160 (633)
                      +... .| ..+..+-|+|...
T Consensus       104 F~tfp~G~~~~gt~CLtVt~~  124 (189)
T PHA02987        104 FNTLLSKNNEKGVVCLNVTTD  124 (189)
T ss_pred             EEecCCCCCceeEEEEEEEch
Confidence            8643 45 5677778888865

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.15  E-value=1.7e-05  Score=63.44  Aligned_cols=78  Identities=22%  Similarity=0.305  Sum_probs=51.7

Q ss_pred             CceEEEEEEEeeecC---CeeEEEECCE--EEEeccC---------Ccc-ceEEEc------cCceEEEcCCCCCCCeEE
Q psy15127        255 PRVNRLSCFAEGSPL---PSVFWTQEGS--QVLMFPG---------NAY-GHLHVT------QEGTLRIQGVQKEDAGFF  313 (633)
Q Consensus       255 g~~~~l~C~~~g~p~---~~v~W~~~g~--~~~~~~~---------~~~-~~~~~~------~~~~l~i~~~~~~d~G~Y  313 (633)
                      |++++|.|.......   ..+.|++...  .+.....         ..+ .|+.+.      .+.+|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            578999999863322   3688887542  1111100         011 344432      234799999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEE
Q psy15127        314 VCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       314 ~C~a~n~~g~~~~~~~l~v  332 (633)
                      .|.+.+..+..+..+.|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999998887777777765

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.15  E-value=2.2e-05  Score=62.56  Aligned_cols=70  Identities=29%  Similarity=0.490  Sum_probs=48.6

Q ss_pred             eEEEEEEEeccC---CCeEEEEeCCcc-----C----C----------CCCeEEc-----ccceEEEccCCCCCCeEEEE
Q psy15127         88 VVEFVCRVGGDP---LPTILWRRDDGK-----M----P----------TGRAKIL-----DDRSLQIENVGPQDEGLYIC  140 (633)
Q Consensus        88 ~~~L~C~~~~~p---~p~i~W~~~~~~-----i----~----------~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C  140 (633)
                      +++|.|......   ...|.|+|....     +    .          .+|..+.     .+.+|+|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            689999986433   337999994311     1    0          0222222     24689999999999999999


Q ss_pred             EEEe-CCceEEEEEEEEE
Q psy15127        141 DVEN-LVGSISLRASLTV  157 (633)
Q Consensus       141 ~~~n-~~g~~s~~~~l~V  157 (633)
                      .+.+ ..|..+..+.|.|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9997 4566677777766

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.13  E-value=1.8e-05  Score=62.71  Aligned_cols=72  Identities=31%  Similarity=0.418  Sum_probs=49.7

Q ss_pred             CCeEEEEEEEeccCC-CeEEEEeCCcc----C----C----------CCCeEEc----ccceEEEccCCCCCCeEEEEEE
Q psy15127         86 GSVVEFVCRVGGDPL-PTILWRRDDGK----M----P----------TGRAKIL----DDRSLQIENVGPQDEGLYICDV  142 (633)
Q Consensus        86 G~~~~L~C~~~~~p~-p~i~W~~~~~~----i----~----------~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~  142 (633)
                      |++++|.|....... -.|.|+|....    +    .          .++....    .+.+|+|.+++.+|+|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            789999998754332 26999985321    0    0          1121221    2457999999999999999998


Q ss_pred             Ee-CCceEEEEEEEEE
Q psy15127        143 EN-LVGSISLRASLTV  157 (633)
Q Consensus       143 ~n-~~g~~s~~~~l~V  157 (633)
                      .. ..|..+..+-|+|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            74 4566777777776

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.13  E-value=3.1e-05  Score=60.44  Aligned_cols=72  Identities=29%  Similarity=0.571  Sum_probs=50.2

Q ss_pred             CeEEEEEEEecc-CCCeEEEEeCCc----cCC--------------CCCeEE----cccceEEEccCCCCCCeEEEEEEE
Q psy15127         87 SVVEFVCRVGGD-PLPTILWRRDDG----KMP--------------TGRAKI----LDDRSLQIENVGPQDEGLYICDVE  143 (633)
Q Consensus        87 ~~~~L~C~~~~~-p~p~i~W~~~~~----~i~--------------~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~~~  143 (633)
                      ++++|.|..... ....|+|.|...    .+.              .+|...    ..+.+|.|.+++.+|+|.|.|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            368999998643 233699988421    110              122222    125799999999999999999987


Q ss_pred             e-CCceEEEEEEEEEE
Q psy15127        144 N-LVGSISLRASLTVH  158 (633)
Q Consensus       144 n-~~g~~s~~~~l~V~  158 (633)
                      + ..|+.++.+.|.|.
T Consensus        81 tfP~G~~~~~~~l~~~   96 (96)
T cd05887          81 TFPLGNTQSSTTVTVL   96 (96)
T ss_pred             eCCCCCeeEEEEEEEC
Confidence            5 46778888888773

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.11  E-value=3.5e-05  Score=62.31  Aligned_cols=80  Identities=16%  Similarity=0.346  Sum_probs=56.4

Q ss_pred             CceEEEEEEEeeec------------CCeeEEEEC--CE--EEEe-cc-----CCcc-ceEEEc------cCceEEEcCC
Q psy15127        255 PRVNRLSCFAEGSP------------LPSVFWTQE--GS--QVLM-FP-----GNAY-GHLHVT------QEGTLRIQGV  305 (633)
Q Consensus       255 g~~~~l~C~~~g~p------------~~~v~W~~~--g~--~~~~-~~-----~~~~-~~~~~~------~~~~l~i~~~  305 (633)
                      |++++|.|......            .+.|.|+|-  |.  .+.. ..     ...+ .|..+.      .+.+|.|.++
T Consensus         2 G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~nl   81 (112)
T cd05900           2 GSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITEL   81 (112)
T ss_pred             CCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEeec
Confidence            78999999987543            358999984  21  1110 00     0112 355543      3558999999


Q ss_pred             CCCCCeEEEEEEEeCCceeEEEEEEEEEe
Q psy15127        306 QKEDAGFFVCSALSVAGSTTVRAFLQVRE  334 (633)
Q Consensus       306 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  334 (633)
                      +..|+|.|.|.+.......+..+.|.|..
T Consensus        82 ~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          82 RSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             ccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            99999999999998878888888888764

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

Probab=98.11  E-value=1.2e-05  Score=62.90  Aligned_cols=79  Identities=28%  Similarity=0.394  Sum_probs=57.4

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++......++.|.|+.|        ....+.+.+| .+.|......       .|......    ......+.|.+|.|+
T Consensus         8 ~~~~~~~~~~~v~W~~~--------~~~~~~~~~y-~v~~~~~~~~-------~~~~~~~~----~~~~~~~~i~~l~p~   67 (93)
T cd00063           8 RVTDVTSTSVTLSWTPP--------EDDGGPITGY-VVEYREKGSG-------DWKEVEVT----PGSETSYTLTGLKPG   67 (93)
T ss_pred             EEEEecCCEEEEEECCC--------CCCCCcceeE-EEEEeeCCCC-------CCEEeecc----CCcccEEEEccccCC
Confidence            45566689999999954        1222678899 8888876422       24322211    035788999999999


Q ss_pred             eeEEEEEeccccccccccC
Q psy15127        614 TKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s  632 (633)
                      +.|.|+|+|.+..|.|.+|
T Consensus        68 ~~Y~~~v~a~~~~~~~~~s   86 (93)
T cd00063          68 TEYEFRVRAVNGGGESPPS   86 (93)
T ss_pred             CEEEEEEEEECCCccCCCc
Confidence            9999999999988888765

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.10  E-value=4e-05  Score=61.74  Aligned_cols=74  Identities=27%  Similarity=0.420  Sum_probs=53.8

Q ss_pred             CCeEEEEEEEeccC-----------CCeEEEEeC-----CccCC------------------CCCeEEc------ccceE
Q psy15127         86 GSVVEFVCRVGGDP-----------LPTILWRRD-----DGKMP------------------TGRAKIL------DDRSL  125 (633)
Q Consensus        86 G~~~~L~C~~~~~p-----------~p~i~W~~~-----~~~i~------------------~~~~~~~------~~~~L  125 (633)
                      |.+++|.|.+.-.|           .+.|.|++-     +....                  .+|..+.      .+.+|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            67899999997433           237999884     11110                  1233332      24689


Q ss_pred             EEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy15127        126 QIENVGPQDEGLYICDVENLVGSISLRASLTVHL  159 (633)
Q Consensus       126 ~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~  159 (633)
                      .|.+++.+|+|.|.|.+..........+.|.|..
T Consensus        82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            9999999999999999998877788888888875

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.09  E-value=4e-05  Score=62.46  Aligned_cols=77  Identities=18%  Similarity=0.201  Sum_probs=50.7

Q ss_pred             eeEEecCCceEEEEEEEeeec----CCeeEEEE---------------CCEEEEeccCCccceEEE-----ccCceEEEc
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSP----LPSVFWTQ---------------EGSQVLMFPGNAYGHLHV-----TQEGTLRIQ  303 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p----~~~v~W~~---------------~g~~~~~~~~~~~~~~~~-----~~~~~l~i~  303 (633)
                      ..+....|+.++|.|......    ...+.|.+               +|.......+.-..|+..     ..+.+|.|.
T Consensus         6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~   85 (116)
T cd05879           6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH   85 (116)
T ss_pred             ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence            345666789999999997643    35899944               222221000111124443     244589999


Q ss_pred             CCCCCCCeEEEEEEEeCCcee
Q psy15127        304 GVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       304 ~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                      +++..|.|.|+|.+.|.-+..
T Consensus        86 nv~~sD~G~Y~C~v~n~p~~~  106 (116)
T cd05879          86 NLDYTDNGTFTCDVKNPPDIV  106 (116)
T ss_pred             cCCcccCEEEEEEEEcCCCcC
Confidence            999999999999999976543

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

Probab=98.08  E-value=6e-05  Score=58.92  Aligned_cols=84  Identities=39%  Similarity=0.598  Sum_probs=63.4

Q ss_pred             CCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEe-eeeceEEEecCCCCCeEEEEEEEEe
Q psy15127        412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHR-ITSTSITVSDLKPDTSYMFIVRAEN  490 (633)
Q Consensus       412 ~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~~~Y~~~v~a~n  490 (633)
                      +|..+........++.|+|.++...   .+.+..|.|.+...+ ...|...... .....+.|.+|.|++.|.++|+|.+
T Consensus         3 ~p~~~~~~~~~~~~~~v~W~~~~~~---~~~~~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~   78 (93)
T cd00063           3 PPTNLRVTDVTSTSVTLSWTPPEDD---GGPITGYVVEYREKG-SGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVN   78 (93)
T ss_pred             CCCCcEEEEecCCEEEEEECCCCCC---CCcceeEEEEEeeCC-CCCCEEeeccCCcccEEEEccccCCCEEEEEEEEEC
Confidence            4555666666689999999998743   246788999998765 3445543332 2567899999999999999999999


Q ss_pred             ccccCCCCC
Q psy15127        491 SHGLGIPSP  499 (633)
Q Consensus       491 ~~G~g~~s~  499 (633)
                      ..|.|.++.
T Consensus        79 ~~~~~~~s~   87 (93)
T cd00063          79 GGGESPPSE   87 (93)
T ss_pred             CCccCCCcc
Confidence            988887665

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.04  E-value=7.8e-06  Score=63.89  Aligned_cols=65  Identities=17%  Similarity=0.135  Sum_probs=48.6

Q ss_pred             EEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeC
Q psy15127        250 LIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV  320 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  320 (633)
                      .++.+|+.|+|.|... .+...+.|+++|.......     .......+.|.|.+++.+|+|.|+|...+.
T Consensus        11 ~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~-----~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          11 SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK-----PPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc-----cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            3567899999999885 6677899999987543100     001123447999999999999999999886

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.04  E-value=6.5e-05  Score=60.92  Aligned_cols=80  Identities=21%  Similarity=0.465  Sum_probs=55.9

Q ss_pred             CceEEEEEEEeeec----------CCeeEEEEC--CEEEEec--c------CCcc-ceEEEc------cCceEEEcCCCC
Q psy15127        255 PRVNRLSCFAEGSP----------LPSVFWTQE--GSQVLMF--P------GNAY-GHLHVT------QEGTLRIQGVQK  307 (633)
Q Consensus       255 g~~~~l~C~~~g~p----------~~~v~W~~~--g~~~~~~--~------~~~~-~~~~~~------~~~~l~i~~~~~  307 (633)
                      |++++|.|.....+          ...+.|++.  +......  .      ...+ .|+...      ...+|.|.+++.
T Consensus         2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~   81 (110)
T cd05878           2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS   81 (110)
T ss_pred             CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence            78999999997654          257999985  2221100  0      1111 355542      334799999999


Q ss_pred             CCCeEEEEEEEeCCceeEEEEEEEEEe
Q psy15127        308 EDAGFFVCSALSVAGSTTVRAFLQVRE  334 (633)
Q Consensus       308 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~  334 (633)
                      +|+|.|.|.+.......+..+.|.|..
T Consensus        82 sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          82 SDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            999999999998777778888888764

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.04  E-value=2.7e-05  Score=61.62  Aligned_cols=79  Identities=23%  Similarity=0.341  Sum_probs=53.5

Q ss_pred             CCceEEEEEEEee-ecCCeeEEEECCEEEEeccC-----------Ccc-ceEEEccC-ceEEEcCCCCCCCeEEEEEEEe
Q psy15127        254 HPRVNRLSCFAEG-SPLPSVFWTQEGSQVLMFPG-----------NAY-GHLHVTQE-GTLRIQGVQKEDAGFFVCSALS  319 (633)
Q Consensus       254 ~g~~~~l~C~~~g-~p~~~v~W~~~g~~~~~~~~-----------~~~-~~~~~~~~-~~l~i~~~~~~d~G~Y~C~a~n  319 (633)
                      .|++|+|.|.... .....+.|++....+.....           ..+ .|+.+..+ .+|.|.+++.+|+|.|.|.+.+
T Consensus         3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~   82 (97)
T cd05775           3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT   82 (97)
T ss_pred             cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence            4799999998755 44468999987543322111           111 34555443 6899999999999999999988


Q ss_pred             CCcee-EEEEEEEE
Q psy15127        320 VAGST-TVRAFLQV  332 (633)
Q Consensus       320 ~~g~~-~~~~~l~v  332 (633)
                      ..|.. ...+.|.|
T Consensus        83 ~~~~~~~~~f~L~v   96 (97)
T cd05775          83 KNGVTITKEFTLHI   96 (97)
T ss_pred             CCCCeEEEEEEEEe
Confidence            77544 44444443

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.02  E-value=3.6e-05  Score=61.34  Aligned_cols=77  Identities=21%  Similarity=0.401  Sum_probs=52.5

Q ss_pred             ceEEEEEEEeeec---CCeeEEEECCE----EEEec--------cCCccceEEEc----cCceEEEcCCCCCCCeEEEEE
Q psy15127        256 RVNRLSCFAEGSP---LPSVFWTQEGS----QVLMF--------PGNAYGHLHVT----QEGTLRIQGVQKEDAGFFVCS  316 (633)
Q Consensus       256 ~~~~l~C~~~g~p---~~~v~W~~~g~----~~~~~--------~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~  316 (633)
                      ++++|.|.....+   ...+.|+|...    .+...        ...-..|....    .+.+|.|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4689999987765   34799998643    11111        01112333333    345899999999999999999


Q ss_pred             EEe-CCceeEEEEEEEE
Q psy15127        317 ALS-VAGSTTVRAFLQV  332 (633)
Q Consensus       317 a~n-~~g~~~~~~~l~v  332 (633)
                      +.+ ..|.......|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            875 6678888877776

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.01  E-value=1.7e-05  Score=59.52  Aligned_cols=57  Identities=30%  Similarity=0.557  Sum_probs=41.9

Q ss_pred             EEEEEEEeeec-CCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEe
Q psy15127        258 NRLSCFAEGSP-LPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  319 (633)
Q Consensus       258 ~~l~C~~~g~p-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  319 (633)
                      ++|.|.+.+.+ .+.+.|+ +......    ..........+.|.|.++..+|.|.|+|.|.|
T Consensus        18 ~~l~C~~~~~~~~~~~~W~-~~~~~~~----~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   18 VTLTCSAEGGPPPPSISWY-DSNPSFN----SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEESSEESSEEEEEE-TEEEEEE----EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             EEEEEEEccccCCeEEEEE-ecCCcee----eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            99999999988 7799999 1111110    11222334556899999999999999999987

...

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.97  E-value=2.9e-05  Score=64.05  Aligned_cols=71  Identities=25%  Similarity=0.439  Sum_probs=51.5

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEecc-CCCeEEEEeCC--ccC-------------CCCCeEEc-----ccceEEEccCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGD-PLPTILWRRDD--GKM-------------PTGRAKIL-----DDRSLQIENVGP  132 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~-p~p~i~W~~~~--~~i-------------~~~~~~~~-----~~~~L~i~~v~~  132 (633)
                      +...|..+.+.+|++++|.|..... ....+.|+|..  ..+             ..+|+...     .+..|+|.+++.
T Consensus         2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~   81 (116)
T cd07706           2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL   81 (116)
T ss_pred             cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH
Confidence            3456778899999999999998653 44579999842  211             01333332     134799999999


Q ss_pred             CCCeEEEEEEEe
Q psy15127        133 QDEGLYICDVEN  144 (633)
Q Consensus       133 ~d~G~Y~C~~~n  144 (633)
                      +|+|.|.|.+..
T Consensus        82 ~Dsg~Y~C~~~~   93 (116)
T cd07706          82 EDSAKYFCALST   93 (116)
T ss_pred             HHCEEEEEEEEC
Confidence            999999999874

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.97  E-value=5.7e-05  Score=57.64  Aligned_cols=59  Identities=20%  Similarity=0.421  Sum_probs=42.4

Q ss_pred             EEEEEEEec-cCCCeEEEEeCCccCCCCCeEEc---------ccceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127         89 VEFVCRVGG-DPLPTILWRRDDGKMPTGRAKIL---------DDRSLQIENVGPQDEGLYICDVENLVG  147 (633)
Q Consensus        89 ~~L~C~~~~-~p~p~i~W~~~~~~i~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~g  147 (633)
                      +.|.|.+.+ .|.+.|+|+++|..+........         ....|.|.....+|...|+|.|.+...
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l   70 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL   70 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence            689999976 58889999999998765322111         113455655667788999999987754

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.96  E-value=2.9e-05  Score=61.82  Aligned_cols=63  Identities=22%  Similarity=0.318  Sum_probs=44.9

Q ss_pred             EEEcCCeEEEEEEEecc--CCCeEEEEeCCc--cCC-------------CCCeEEcc---cceEEEccCCCCCCeEEEEE
Q psy15127         82 TVLSGSVVEFVCRVGGD--PLPTILWRRDDG--KMP-------------TGRAKILD---DRSLQIENVGPQDEGLYICD  141 (633)
Q Consensus        82 ~~~~G~~~~L~C~~~~~--p~p~i~W~~~~~--~i~-------------~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~  141 (633)
                      .+.+|++++|.|.+.+.  ....+.|||...  ...             .+++....   ...|+|.+++.+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            47899999999998754  455799998542  110             11222211   24699999999999999999


Q ss_pred             EEe
Q psy15127        142 VEN  144 (633)
Q Consensus       142 ~~n  144 (633)
                      +.+
T Consensus        82 ~~~   84 (98)
T cd04984          82 VWD   84 (98)
T ss_pred             Ecc
Confidence            864

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.95  E-value=4.3e-05  Score=59.82  Aligned_cols=71  Identities=14%  Similarity=0.184  Sum_probs=50.3

Q ss_pred             CCCceEEEcCCeEEEEEEEec-cCCCe--EEEEeCCccCCCCCeEE------cccceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127         77 EPSDATVLSGSVVEFVCRVGG-DPLPT--ILWRRDDGKMPTGRAKI------LDDRSLQIENVGPQDEGLYICDVENLVG  147 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~-~p~p~--i~W~~~~~~i~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~~~n~~g  147 (633)
                      .+....+.+|+.++|.|.+.+ .|.+.  |.|||++..+....+..      ....+|++..-..+|...|+|+|.+..+
T Consensus         7 ~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~   86 (100)
T cd05755           7 SPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLR   86 (100)
T ss_pred             ecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccC
Confidence            344445789999999999975 67775  79999999885432221      1124677765556666699999987653

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=97.93  E-value=5.2e-05  Score=57.83  Aligned_cols=60  Identities=27%  Similarity=0.403  Sum_probs=42.1

Q ss_pred             EEEEEEEec-cCCCeEEEEeCCccCCCCCeEEc--------ccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         89 VEFVCRVGG-DPLPTILWRRDDGKMPTGRAKIL--------DDRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        89 ~~L~C~~~~-~p~p~i~W~~~~~~i~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      +.|.|.+.+ .|.+.|+|++++..+........        ..+.|.+.....+|.+.|+|.|.+....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            689999975 58889999999998854321111        1234666555566778999999887543

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd00098 IgC Immunoglobulin Constant domain

Probab=97.91  E-value=2.7e-05  Score=61.69  Aligned_cols=64  Identities=22%  Similarity=0.347  Sum_probs=47.3

Q ss_pred             EcCCeEEEEEEEecc-C-CCeEEEEeCCccCCCCCe--EE--ccc------ceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127         84 LSGSVVEFVCRVGGD-P-LPTILWRRDDGKMPTGRA--KI--LDD------RSLQIENVGPQDEGLYICDVENLVG  147 (633)
Q Consensus        84 ~~G~~~~L~C~~~~~-p-~p~i~W~~~~~~i~~~~~--~~--~~~------~~L~i~~v~~~d~G~Y~C~~~n~~g  147 (633)
                      ..|+.++|.|.+.|. | .+.|+|+++|..+.....  ..  ..+      +.|.|......|.|.|+|.|.+...
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            468899999999987 5 358999999998865432  11  112      3566766666799999999988654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>smart00060 FN3 Fibronectin type 3 domain

Probab=97.89  E-value=6.4e-05  Score=57.07  Aligned_cols=76  Identities=30%  Similarity=0.451  Sum_probs=50.3

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++......++.|+|++|        ...+.  .+| .+.|........    ..|.     .+........+.|.+|+++
T Consensus         8 ~~~~~~~~~~~v~W~~~--------~~~~~--~~y-~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~i~~L~~~   67 (83)
T smart00060        8 RVTDVTSTSVTLSWEPP--------PDDGI--TGY-IVGYRVEYREEG----SSWK-----EVNVTPSSTSYTLTGLKPG   67 (83)
T ss_pred             EEEEEeCCEEEEEECCC--------CCCCC--Ccc-EEEEEEEEecCC----CccE-----EEEecCCccEEEEeCcCCC
Confidence            55566677999999954        11122  788 787776544320    1132     1112222678999999999


Q ss_pred             eeEEEEEecccccccc
Q psy15127        614 TKYEFFLVPFFKTVEG  629 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g  629 (633)
                      +.|.|+|+|.+..|.+
T Consensus        68 ~~Y~v~v~a~~~~g~~   83 (83)
T smart00060       68 TEYEFRVRAVNGAGEG   83 (83)
T ss_pred             CEEEEEEEEEcccCCC
Confidence            9999999999986653

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=97.88  E-value=7.5e-05  Score=60.84  Aligned_cols=74  Identities=18%  Similarity=0.334  Sum_probs=52.0

Q ss_pred             eeEEecCCceEEEEEEEeeecCCeeEEEECCE---E--EEec-cC---CccceEEEc-----cCceEEEcCCCCCCCeEE
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGS---Q--VLMF-PG---NAYGHLHVT-----QEGTLRIQGVQKEDAGFF  313 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~---~--~~~~-~~---~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y  313 (633)
                      ..+.+..|++++|.|.+.+.+...+.|++...   .  +... ..   ....++.+.     ....|.|.+++.+|+|.|
T Consensus         6 ~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y   85 (109)
T cd04983           6 QSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVY   85 (109)
T ss_pred             CceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEE
Confidence            45667889999999999888788999998532   1  1100 00   122344333     234799999999999999


Q ss_pred             EEEEEeCC
Q psy15127        314 VCSALSVA  321 (633)
Q Consensus       314 ~C~a~n~~  321 (633)
                      .|.+.+..
T Consensus        86 ~C~~~~~~   93 (109)
T cd04983          86 FCALSESG   93 (109)
T ss_pred             EEEEecCC
Confidence            99998754

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.87  E-value=5.2e-05  Score=61.36  Aligned_cols=62  Identities=26%  Similarity=0.426  Sum_probs=43.5

Q ss_pred             EEEcCCeEEEEEEEecc-CCCeEEEEeCCcc---C--------C------------CCCeEEc--c---cceEEEccCCC
Q psy15127         82 TVLSGSVVEFVCRVGGD-PLPTILWRRDDGK---M--------P------------TGRAKIL--D---DRSLQIENVGP  132 (633)
Q Consensus        82 ~~~~G~~~~L~C~~~~~-p~p~i~W~~~~~~---i--------~------------~~~~~~~--~---~~~L~i~~v~~  132 (633)
                      .+++|++++|.|.+.+. ....+.|||....   .        .            .+++...  .   ...|+|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            57899999999998653 3447999985321   0        0            1122211  1   13599999999


Q ss_pred             CCCeEEEEEEE
Q psy15127        133 QDEGLYICDVE  143 (633)
Q Consensus       133 ~d~G~Y~C~~~  143 (633)
                      +|+|.|.|...
T Consensus        82 ~Dsg~YyCa~~   92 (107)
T cd07700          82 EDSGTYFCMTV   92 (107)
T ss_pred             HHCEEEEEeEc
Confidence            99999999975

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.86  E-value=0.00015  Score=56.60  Aligned_cols=69  Identities=26%  Similarity=0.503  Sum_probs=46.5

Q ss_pred             CeEEEEEEEec-cCCCeEEEEeCCc----cC-----------C---CCCeEEc----ccceEEEccCCCCCCeEEEEEEE
Q psy15127         87 SVVEFVCRVGG-DPLPTILWRRDDG----KM-----------P---TGRAKIL----DDRSLQIENVGPQDEGLYICDVE  143 (633)
Q Consensus        87 ~~~~L~C~~~~-~p~p~i~W~~~~~----~i-----------~---~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~  143 (633)
                      +.++|.|.... .....++|.|...    .+           .   .+|....    .+.+|.|.|++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            46899999853 2344689998532    11           0   1232222    25789999999999999999997


Q ss_pred             eC-CceEEEEEEE
Q psy15127        144 NL-VGSISLRASL  155 (633)
Q Consensus       144 n~-~g~~s~~~~l  155 (633)
                      .. .|..++.+.|
T Consensus        81 t~P~g~~~~~i~~   93 (96)
T cd05889          81 TYPQGSWEKVIEV   93 (96)
T ss_pred             eCCCCCeEEEEEE
Confidence            65 5656665554

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=97.85  E-value=0.0002  Score=56.42  Aligned_cols=76  Identities=20%  Similarity=0.338  Sum_probs=51.4

Q ss_pred             eEEEEEEEeeecC-C---eeEEEECC--E--EEEeccC--------CccceEEEc----cCceEEEcCCCCCCCeEEEEE
Q psy15127        257 VNRLSCFAEGSPL-P---SVFWTQEG--S--QVLMFPG--------NAYGHLHVT----QEGTLRIQGVQKEDAGFFVCS  316 (633)
Q Consensus       257 ~~~l~C~~~g~p~-~---~v~W~~~g--~--~~~~~~~--------~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~  316 (633)
                      +++|.|.....++ .   +|.|.+..  .  .+.....        .-.+|+...    .+.+|.|.+++.+|.|.|.|.
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~   81 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE   81 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence            5789999875322 1   68998842  1  2221111        111344433    246899999999999999999


Q ss_pred             EEe-CCceeEEEEEEEE
Q psy15127        317 ALS-VAGSTTVRAFLQV  332 (633)
Q Consensus       317 a~n-~~g~~~~~~~l~v  332 (633)
                      +.+ +.|+.+..+.|.|
T Consensus        82 v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          82 FATFPTGNRESQLNLTV   98 (99)
T ss_pred             EEeCCCCCeEEEEEEEE
Confidence            999 6788888887776

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>smart00060 FN3 Fibronectin type 3 domain

Probab=97.85  E-value=0.00021  Score=54.14  Aligned_cols=77  Identities=38%  Similarity=0.539  Sum_probs=52.9

Q ss_pred             CCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCC--CeEEEEEeeeeceEEEecCCCCCeEEEEEEEEe
Q psy15127        413 PAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQT--GWVVAAHRITSTSITVSDLKPDTSYMFIVRAEN  490 (633)
Q Consensus       413 p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~--~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n  490 (633)
                      |..+........++.|+|.++....    . .+|.+.|.......  .|...........+.|.+|.|++.|.|+|+|.+
T Consensus         4 p~~~~~~~~~~~~~~v~W~~~~~~~----~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~   78 (83)
T smart00060        4 PSNLRVTDVTSTSVTLSWEPPPDDG----I-TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVN   78 (83)
T ss_pred             CCcEEEEEEeCCEEEEEECCCCCCC----C-CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEc
Confidence            3345555566679999999776331    1 56777776553322  354433333357899999999999999999999


Q ss_pred             cccc
Q psy15127        491 SHGL  494 (633)
Q Consensus       491 ~~G~  494 (633)
                      ..|.
T Consensus        79 ~~g~   82 (83)
T smart00060       79 GAGE   82 (83)
T ss_pred             ccCC
Confidence            8664

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=97.84  E-value=0.00018  Score=58.59  Aligned_cols=32  Identities=16%  Similarity=0.442  Sum_probs=25.0

Q ss_pred             cCCCceEEecCCcEEEEEeCCCCCCCCeEEEEEC
Q psy15127        166 AEPKDTRVASGETALLECGPPKGQPEPTLHWKKN  199 (633)
Q Consensus       166 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~  199 (633)
                      ..|....+.+|++++|.|.+ .+ +...+.|+|.
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~-~~-~~~~v~Wykq   34 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQ-TS-GHDNMYWYRQ   34 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEE-CC-CCCEEEEEEE
Confidence            45667788899999999984 44 6678999885

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.84  E-value=0.0001  Score=60.90  Aligned_cols=70  Identities=26%  Similarity=0.349  Sum_probs=49.2

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccC------CCeEEEEeCCcc-----C----C---------CCCeEEcc-----cceEE
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDP------LPTILWRRDDGK-----M----P---------TGRAKILD-----DRSLQ  126 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p------~p~i~W~~~~~~-----i----~---------~~~~~~~~-----~~~L~  126 (633)
                      ..|+.+.+.+|++++|.|......      ...+.|||....     +    .         .+|+....     +..|.
T Consensus         4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~   83 (119)
T cd05712           4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLL   83 (119)
T ss_pred             cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEE
Confidence            457788999999999999875221      245899985321     0    0         12333321     24799


Q ss_pred             EccCCCCCCeEEEEEEEeC
Q psy15127        127 IENVGPQDEGLYICDVENL  145 (633)
Q Consensus       127 i~~v~~~d~G~Y~C~~~n~  145 (633)
                      |.+++.+|+|.|.|.+...
T Consensus        84 I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          84 ISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             EccCChhhCeEEEEEEEcC
Confidence            9999999999999998653

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.81  E-value=0.00011  Score=58.41  Aligned_cols=65  Identities=20%  Similarity=0.290  Sum_probs=46.8

Q ss_pred             eEEEcCCeEEEEEEEec-cCCCeEEEEeCCccC--------------CCCCeEEcc-----cceEEEccCCCCCCeEEEE
Q psy15127         81 ATVLSGSVVEFVCRVGG-DPLPTILWRRDDGKM--------------PTGRAKILD-----DRSLQIENVGPQDEGLYIC  140 (633)
Q Consensus        81 ~~~~~G~~~~L~C~~~~-~p~p~i~W~~~~~~i--------------~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C  140 (633)
                      +.+.+|++++|.|.... .....+.|+|.....              ..++.....     ...|+|.+++.+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            46789999999999864 345579999965311              112333321     2479999999999999999


Q ss_pred             EEEeC
Q psy15127        141 DVENL  145 (633)
Q Consensus       141 ~~~n~  145 (633)
                      .+...
T Consensus        82 ~~~~~   86 (98)
T cd05716          82 GVGDD   86 (98)
T ss_pred             EcccC
Confidence            98754

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.75  E-value=0.00029  Score=58.01  Aligned_cols=26  Identities=19%  Similarity=0.457  Sum_probs=22.8

Q ss_pred             CceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127        297 EGTLRIQGVQKEDAGFFVCSALSVAG  322 (633)
Q Consensus       297 ~~~l~i~~~~~~d~G~Y~C~a~n~~g  322 (633)
                      +.+|.|.+++.+|+|.|.|.+.|.-+
T Consensus        79 ~~sL~I~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          79 DASIVIHNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             eeEEEEeeCCcccCEEEEEEEEeCCC
Confidence            34799999999999999999998654

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.74  E-value=0.00024  Score=57.17  Aligned_cols=80  Identities=18%  Similarity=0.263  Sum_probs=54.7

Q ss_pred             CceEEEEEEEeeec-------CCeeEEEEC-----CEEEE--ec-------cCCccceEEEcc------CceEEEcCCCC
Q psy15127        255 PRVNRLSCFAEGSP-------LPSVFWTQE-----GSQVL--MF-------PGNAYGHLHVTQ------EGTLRIQGVQK  307 (633)
Q Consensus       255 g~~~~l~C~~~g~p-------~~~v~W~~~-----g~~~~--~~-------~~~~~~~~~~~~------~~~l~i~~~~~  307 (633)
                      |+.++|.|...-.|       .+.+.|.+.     ...+.  ..       ...-.+|..+..      +.+|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            57899999976432       368999874     12211  10       111123555532      44899999999


Q ss_pred             CCCeEEEEEEEeCCceeEEEEEEEEEe
Q psy15127        308 EDAGFFVCSALSVAGSTTVRAFLQVRE  334 (633)
Q Consensus       308 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~  334 (633)
                      +|+|.|.|.+.......+..+.|.|..
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            999999999999777778888888764

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.74  E-value=0.00018  Score=59.10  Aligned_cols=86  Identities=20%  Similarity=0.291  Sum_probs=55.0

Q ss_pred             ceeEEecCCceEEEEEEEe-eecCCeeEEEECCE-----EEE---------eccCCccceEEEccC-----ceEEEcCCC
Q psy15127        247 ASLLIWNHPRVNRLSCFAE-GSPLPSVFWTQEGS-----QVL---------MFPGNAYGHLHVTQE-----GTLRIQGVQ  306 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~-g~p~~~v~W~~~g~-----~~~---------~~~~~~~~~~~~~~~-----~~l~i~~~~  306 (633)
                      +..+....|+++.|.|... ......+.|++...     .+.         ........+.....+     .+|.|.+++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~   87 (114)
T PF07686_consen    8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ   87 (114)
T ss_dssp             ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred             CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence            4556778899999999998 44556899998322     111         001111123322222     369999999


Q ss_pred             CCCCeEEEEEEEeC-CceeEEEEEEEE
Q psy15127        307 KEDAGFFVCSALSV-AGSTTVRAFLQV  332 (633)
Q Consensus       307 ~~d~G~Y~C~a~n~-~g~~~~~~~l~v  332 (633)
                      .+|+|.|.|.+... .......+.|.|
T Consensus        88 ~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   88 PSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             GGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             cCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            99999999999876 233344445443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=97.72  E-value=0.00011  Score=59.31  Aligned_cols=72  Identities=25%  Similarity=0.412  Sum_probs=49.4

Q ss_pred             EecCCceEEEEEEEeee-cCCeeEEEECCE-----EEEec-c------CCccceEEEc-----cCceEEEcCCCCCCCeE
Q psy15127        251 IWNHPRVNRLSCFAEGS-PLPSVFWTQEGS-----QVLMF-P------GNAYGHLHVT-----QEGTLRIQGVQKEDAGF  312 (633)
Q Consensus       251 ~~~~g~~~~l~C~~~g~-p~~~v~W~~~g~-----~~~~~-~------~~~~~~~~~~-----~~~~l~i~~~~~~d~G~  312 (633)
                      .+..|++++|.|.+.+. +...+.|++...     .+... .      .....++...     ...+|.|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            35678999999999876 667899998532     11110 0      1112333332     23379999999999999


Q ss_pred             EEEEEEeCCc
Q psy15127        313 FVCSALSVAG  322 (633)
Q Consensus       313 Y~C~a~n~~g  322 (633)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999987665

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=97.72  E-value=0.00023  Score=56.66  Aligned_cols=76  Identities=25%  Similarity=0.525  Sum_probs=50.1

Q ss_pred             eEEEEEEEeeec---CCeeEEEECCE-----EEEec----cCC---cc-ceEEEc-----cCceEEEcCCCCCCCeEEEE
Q psy15127        257 VNRLSCFAEGSP---LPSVFWTQEGS-----QVLMF----PGN---AY-GHLHVT-----QEGTLRIQGVQKEDAGFFVC  315 (633)
Q Consensus       257 ~~~l~C~~~g~p---~~~v~W~~~g~-----~~~~~----~~~---~~-~~~~~~-----~~~~l~i~~~~~~d~G~Y~C  315 (633)
                      +++|.|......   ...+.|+|...     .+...    ...   .+ .|....     .+.+|.|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            578999986544   34889998421     11111    000   11 233333     24589999999999999999


Q ss_pred             EEEe-CCceeEEEEEEEE
Q psy15127        316 SALS-VAGSTTVRAFLQV  332 (633)
Q Consensus       316 ~a~n-~~g~~~~~~~l~v  332 (633)
                      .+.+ ..|..+..+.|.|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9987 6677777777765

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=97.71  E-value=0.00027  Score=57.85  Aligned_cols=77  Identities=17%  Similarity=0.310  Sum_probs=50.2

Q ss_pred             ceeEEecCCceEEEEEEEeeecC----CeeEEEEC----CEE--EEeccC-------Ccc-ceEEEc-----cCceEEEc
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPL----PSVFWTQE----GSQ--VLMFPG-------NAY-GHLHVT-----QEGTLRIQ  303 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~----~~v~W~~~----g~~--~~~~~~-------~~~-~~~~~~-----~~~~l~i~  303 (633)
                      +..+...+|++++|.|.....++    ..+.|++.    +..  +.....       ..+ .|+...     .+.+|.|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            45567788999999999865432    36999752    221  211111       111 233222     24479999


Q ss_pred             CCCCCCCeEEEEEEEeCCce
Q psy15127        304 GVQKEDAGFFVCSALSVAGS  323 (633)
Q Consensus       304 ~~~~~d~G~Y~C~a~n~~g~  323 (633)
                      +++.+|+|.|.|.+.|..+.
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          85 QLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             eCChhhCEEEEEEEEeCCCC
Confidence            99999999999999987653

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.70  E-value=0.00022  Score=53.49  Aligned_cols=76  Identities=16%  Similarity=0.207  Sum_probs=47.8

Q ss_pred             EEEEEEEee-ecCCeeEEEECCEEEEeccCCc-cceEEEccCceEEEcCCCCCCCeEEEEEEEeCCc-eeEEEEEEEEE
Q psy15127        258 NRLSCFAEG-SPLPSVFWTQEGSQVLMFPGNA-YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG-STTVRAFLQVR  333 (633)
Q Consensus       258 ~~l~C~~~g-~p~~~v~W~~~g~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~v~  333 (633)
                      +.|.|.+.| .|.+.|.|++++.++....... ...-.....+.|.|..-..+|...|+|+|.|..- .......|.|.
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~   80 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ   80 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence            579999976 5668999999999875211000 0000111233688877777788899999988652 23444455543

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.69  E-value=0.0007  Score=52.88  Aligned_cols=76  Identities=17%  Similarity=0.290  Sum_probs=52.3

Q ss_pred             eEEEEEEEeeecC-CeeEEEECC----EEEEeccC--------CccceEEEc----cCceEEEcCCCCCCCeEEEEEE-E
Q psy15127        257 VNRLSCFAEGSPL-PSVFWTQEG----SQVLMFPG--------NAYGHLHVT----QEGTLRIQGVQKEDAGFFVCSA-L  318 (633)
Q Consensus       257 ~~~l~C~~~g~p~-~~v~W~~~g----~~~~~~~~--------~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a-~  318 (633)
                      +++|.|.....+. .+|.|.|..    ..+.....        .-..|....    .+.+|.|.+++.+|+|.|.|.+ .
T Consensus         2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~t   81 (96)
T cd05887           2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVT   81 (96)
T ss_pred             CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEe
Confidence            6789999865443 489998842    22221110        111344442    3568999999999999999997 5


Q ss_pred             eCCceeEEEEEEEE
Q psy15127        319 SVAGSTTVRAFLQV  332 (633)
Q Consensus       319 n~~g~~~~~~~l~v  332 (633)
                      .+.|+.+++..|.|
T Consensus        82 fP~G~~~~~~~l~~   95 (96)
T cd05887          82 FPLGNTQSSTTVTV   95 (96)
T ss_pred             CCCCCeeEEEEEEE
Confidence            67888899888876

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.69  E-value=0.00041  Score=51.85  Aligned_cols=75  Identities=17%  Similarity=0.245  Sum_probs=53.5

Q ss_pred             EecCCceEEEEEEEeeecCC--eeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127        251 IWNHPRVNRLSCFAEGSPLP--SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  328 (633)
Q Consensus       251 ~~~~g~~~~l~C~~~g~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  328 (633)
                      .+-.|++++|+|.....+.|  .+.|...+...        .........+|.+.++...|+|..+|.+....-.....+
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~--------~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~   81 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKS--------KQILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKL   81 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCCcc--------ceeccCCccEEEeceeCcccCCEEEEEEEECceEEEEEe
Confidence            35578999999999665444  99999766432        122223455899999999999999999976544445555


Q ss_pred             EEEEE
Q psy15127        329 FLQVR  333 (633)
Q Consensus       329 ~l~v~  333 (633)
                      .+.|.
T Consensus        82 ~V~Vl   86 (88)
T cd07694          82 DIKVL   86 (88)
T ss_pred             eEEEE
Confidence            55554

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.68  E-value=0.0002  Score=54.50  Aligned_cols=58  Identities=19%  Similarity=0.408  Sum_probs=42.5

Q ss_pred             EEEEEEEec-cCCCeEEEEeCCccCCCCCeE---------EcccceEEEccCCCCCCeEEEEEEEeCC
Q psy15127         89 VEFVCRVGG-DPLPTILWRRDDGKMPTGRAK---------ILDDRSLQIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus        89 ~~L~C~~~~-~p~p~i~W~~~~~~i~~~~~~---------~~~~~~L~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      ++|.|.+.| .|...|+|+|+|..+......         +.....|.|..-..+|...|+|+|.+..
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~   69 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES   69 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence            689999976 677899999999987543211         1112467776666778899999998764

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.65  E-value=0.00018  Score=59.11  Aligned_cols=69  Identities=25%  Similarity=0.478  Sum_probs=48.3

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCC--ccC-------C-----------CCCeEEcc---c--ceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDD--GKM-------P-----------TGRAKILD---D--RSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~--~~i-------~-----------~~~~~~~~---~--~~L~i~  128 (633)
                      .+|....+.+|++++|.|...+..  ...+.|||..  +..       .           .+++....   .  ..|+|.
T Consensus         2 ~~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~   81 (117)
T cd04981           2 VESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLN   81 (117)
T ss_pred             ccCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEEC
Confidence            467788899999999999875432  4569999843  211       0           12222221   1  269999


Q ss_pred             cCCCCCCeEEEEEEEe
Q psy15127        129 NVGPQDEGLYICDVEN  144 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~n  144 (633)
                      +++.+|+|.|.|.+..
T Consensus        82 ~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          82 SLTPEDTAVYYCARGL   97 (117)
T ss_pred             CCCHHHCEEEEEEEEc
Confidence            9999999999998754

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd00098 IgC Immunoglobulin Constant domain

Probab=97.65  E-value=0.00012  Score=57.84  Aligned_cols=67  Identities=15%  Similarity=0.209  Sum_probs=46.1

Q ss_pred             CCceEEEEEEEeee-cC-CeeEEEECCEEEEeccCCccceEEEccC------ceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127        254 HPRVNRLSCFAEGS-PL-PSVFWTQEGSQVLMFPGNAYGHLHVTQE------GTLRIQGVQKEDAGFFVCSALSVAG  322 (633)
Q Consensus       254 ~g~~~~l~C~~~g~-p~-~~v~W~~~g~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~G~Y~C~a~n~~g  322 (633)
                      .|+.++|.|.+.|. |. +.++|+++|..+.....  ........+      +.|.+.....+|.|.|+|+|.+...
T Consensus        12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~--~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVT--TTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             cCCCeEEEEEEeeEECCCcEEEEEECCEECCCcee--ccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            56899999999998 53 58999999987742211  011111222      2466776666799999999988654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd00096 Ig Immunoglobulin domain

Probab=97.65  E-value=0.00024  Score=52.19  Aligned_cols=58  Identities=31%  Similarity=0.595  Sum_probs=44.7

Q ss_pred             EEEEEEEeccCCCeEEEEeCCccCCCCCe--------EEcccceEEEccCCCCCCeEEEEEEEeCC
Q psy15127         89 VEFVCRVGGDPLPTILWRRDDGKMPTGRA--------KILDDRSLQIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus        89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~~~--------~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      +.|.|.+.+.+...+.|++++........        .......|.|.++..+|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            46899998877778999998876543221        12234679999999999999999998765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=97.63  E-value=0.00024  Score=54.18  Aligned_cols=62  Identities=19%  Similarity=0.302  Sum_probs=41.6

Q ss_pred             EEEEEEEeee-cCCeeEEEECCEEEEeccCCccceEEEcc------CceEEEcCCCCCCCeEEEEEEEeCCce
Q psy15127        258 NRLSCFAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQ------EGTLRIQGVQKEDAGFFVCSALSVAGS  323 (633)
Q Consensus       258 ~~l~C~~~g~-p~~~v~W~~~g~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~a~n~~g~  323 (633)
                      +.|.|.+.+. |.+.++|+++|+.+....    .......      .+.|.+.....++.+.|+|+|.+....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~----~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK----LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce----eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            5799999765 888999999998874211    0111111      224556666667778999999987643

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>TIGR00864 PCC polycystin cation channel protein

Probab=97.62  E-value=0.34  Score=59.24  Aligned_cols=241  Identities=13%  Similarity=0.044  Sum_probs=129.3

Q ss_pred             CCCCCeEEEEEE--EeCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCC
Q psy15127        131 GPQDEGLYICDV--ENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS  208 (633)
Q Consensus       131 ~~~d~G~Y~C~~--~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~  208 (633)
                      ...+.|.|.-.+  .|..|..+....+.|.++-..+.+......+..|+.+.|.-. .......++.|..++..-.....
T Consensus      1665 t~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~-lt~GS~vty~W~~gdG~s~~~s~ 1743 (2740)
T TIGR00864      1665 NPLEAGPCDIFLQAANLLGQATADCTIDFLEPAGNLMLQASDNPAAVNALINLSAE-LAEGSGLQYRWFLEEGDDLETSE 1743 (2740)
T ss_pred             ecCCCceEEEEEEEeecccceeeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEE-ecCCCCcEEEEEECCCCCcccCC
Confidence            447789988875  588898888888888887555655656666778999998876 45556789999875532111111


Q ss_pred             eeEEeccceeeeEEEeeeEEE--EeecCCCCCCccc---ccccce-----------eEEecCCceEEEEEEEeeecCCee
Q psy15127        209 KSLDLSRRTLGWLRVRPLYWN--VARPRANLNPRYI---GRKMAS-----------LLIWNHPRVNRLSCFAEGSPLPSV  272 (633)
Q Consensus       209 ~~~~~~~~~~~~~~~~g~y~C--~a~~~~~~~p~~~---~~~~~~-----------~~~~~~g~~~~l~C~~~g~p~~~v  272 (633)
                      ..+..      .+...|.|.-  .|.|..+......   +.....           ...+..|..+.|.-.+.-.....+
T Consensus      1744 p~~tH------tf~~~G~y~VtVta~N~vss~~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw 1817 (2740)
T TIGR00864      1744 PFMSH------SFPSAGLHLVTMKAFNELGSANASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSW 1817 (2740)
T ss_pred             CceEE------EccCCceEEEEEEEEccccccceeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEE
Confidence            11111      1112344433  3444444221100   000000           001223444555544432333466


Q ss_pred             EEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEE--EEeCCceeEEEEEEEEEecccCC-----Cce---
Q psy15127        273 FWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS--ALSVAGSTTVRAFLQVREFCVLP-----KGT---  342 (633)
Q Consensus       273 ~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--a~n~~g~~~~~~~l~v~~~~~~p-----~p~---  342 (633)
                      .|..++..-.           ...+-.     .+..+.|.|+-.  |.|..+....+..+.|++...--     +..   
T Consensus      1818 ~W~f~~g~s~-----------~gk~v~-----~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~ 1881 (2740)
T TIGR00864      1818 CWAIDGGSSK-----------MGKHAC-----MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAI 1881 (2740)
T ss_pred             EEEeCCCCcc-----------ccceeE-----EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccC
Confidence            7776653211           001111     344578999764  68999988888888888642100     000   


Q ss_pred             -----E----EeCCCcc---ccCCCCC------ceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecC
Q psy15127        343 -----F----TLGQPNL---ATGNSDL------RRIACDLRETDSGLYTCTASSESGETSWSASLSVEPR  394 (633)
Q Consensus       343 -----~----~~~~~~~---~~g~p~~------~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~  394 (633)
                           +    .++....   ..|+..+      ......+.+-..+.....|.|.++..+....+.|..+
T Consensus      1882 n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t~~~t~~HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~ 1951 (2740)
T TIGR00864      1882 GEKVEFQILLAAGSAVNFRLQIGGAAPEVLQPGPRFSHSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEA 1951 (2740)
T ss_pred             CCEEEEEEEecCCCceEEEEEeCCCCceeecCCCeEEeecCCCCcEEEEEEEEeccceeeeeEEEEEEEe
Confidence                 0    0111000   0022111      1233455566677778889999999888888777654

Note: this model has been restricted to the amino half because for technical reasons.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=97.62  E-value=0.00023  Score=57.56  Aligned_cols=74  Identities=20%  Similarity=0.260  Sum_probs=49.4

Q ss_pred             ceeEEecCCceEEEEEEEeeec-CCeeEEEECC--E---EEEecc----CCccceEEEcc---CceEEEcCCCCCCCeEE
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSP-LPSVFWTQEG--S---QVLMFP----GNAYGHLHVTQ---EGTLRIQGVQKEDAGFF  313 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p-~~~v~W~~~g--~---~~~~~~----~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y  313 (633)
                      +..+.+.+|++++|.|.+.+.. ...+.|+|..  +   .+....    .....++....   ...|.|.++..+|+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y   86 (106)
T cd04980           7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVY   86 (106)
T ss_pred             CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEE
Confidence            3456778999999999997765 5689999743  1   111110    01112344322   23699999999999999


Q ss_pred             EEEEEeC
Q psy15127        314 VCSALSV  320 (633)
Q Consensus       314 ~C~a~n~  320 (633)
                      .|.+.+.
T Consensus        87 ~Ca~~~~   93 (106)
T cd04980          87 YCQQYGT   93 (106)
T ss_pred             EEEEeCC
Confidence            9998653

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.62  E-value=0.00015  Score=56.49  Aligned_cols=63  Identities=21%  Similarity=0.377  Sum_probs=43.6

Q ss_pred             CCeEEEEEEEe-ccCCCeEEEEeCCccCCCCC--eE-------EcccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         86 GSVVEFVCRVG-GDPLPTILWRRDDGKMPTGR--AK-------ILDDRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        86 G~~~~L~C~~~-~~p~p~i~W~~~~~~i~~~~--~~-------~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      |+.+.|.|.+. +.|.|.|+|+.++..+....  ..       ....+.|.+..-..++...++|.|.+....
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            78999999874 68999999999998772110  00       111246777665567888999999987543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.60  E-value=0.0012  Score=53.33  Aligned_cols=80  Identities=24%  Similarity=0.376  Sum_probs=55.7

Q ss_pred             CceEEEEEEEeeec-----------CCeeEEEEC-----CE-----EEEecc-------CCccceEEEc------cCceE
Q psy15127        255 PRVNRLSCFAEGSP-----------LPSVFWTQE-----GS-----QVLMFP-------GNAYGHLHVT------QEGTL  300 (633)
Q Consensus       255 g~~~~l~C~~~g~p-----------~~~v~W~~~-----g~-----~~~~~~-------~~~~~~~~~~------~~~~l  300 (633)
                      +.+++|.|...-.|           ...|.|++-     |.     .+....       ..-.+|....      .+.+|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            47889999998544           237899873     11     111111       1122344442      34589


Q ss_pred             EEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEe
Q psy15127        301 RIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE  334 (633)
Q Consensus       301 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  334 (633)
                      .|.+++..|+|.|.|++.+.....+..+.|.|..
T Consensus        82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            9999999999999999999988888888888864

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=97.58  E-value=0.00026  Score=58.34  Aligned_cols=73  Identities=19%  Similarity=0.390  Sum_probs=50.0

Q ss_pred             ceeEEecCCceEEEEEEEee--ecCCeeEEEEC--CEE---EE-eccC--------CccceEEEc-----cCceEEEcCC
Q psy15127        247 ASLLIWNHPRVNRLSCFAEG--SPLPSVFWTQE--GSQ---VL-MFPG--------NAYGHLHVT-----QEGTLRIQGV  305 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g--~p~~~v~W~~~--g~~---~~-~~~~--------~~~~~~~~~-----~~~~l~i~~~  305 (633)
                      +..+...+|+.++|.|.+.+  .+.+.+.|++.  |..   +. ....        ....++.+.     ....|.|.++
T Consensus         5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~   84 (116)
T cd04982           5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL   84 (116)
T ss_pred             CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence            34566788999999999977  67789999985  221   11 1110        012344433     2237999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy15127        306 QKEDAGFFVCSALS  319 (633)
Q Consensus       306 ~~~d~G~Y~C~a~n  319 (633)
                      +.+|+|.|.|.+..
T Consensus        85 ~~~Dsg~Y~C~~~~   98 (116)
T cd04982          85 EKEDSATYYCAYWE   98 (116)
T ss_pred             CHHHCEEEEEEEec
Confidence            99999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>KOG4258|consensus

Probab=97.57  E-value=0.00049  Score=72.18  Aligned_cols=133  Identities=17%  Similarity=0.251  Sum_probs=92.3

Q ss_pred             EEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEec-------------CCCCeEEEEEeee--------eceEEEecCC
Q psy15127        419 LNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSD-------------LQTGWVVAAHRIT--------STSITVSDLK  477 (633)
Q Consensus       419 ~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~-------------~~~~~~~~~~~~~--------~~~~~i~~L~  477 (633)
                      ...+.+++.|+|..-...+  -....+|.+.|+..-             ....|........        ..-+.+.+|+
T Consensus       497 ~~~~~dsi~lrW~~~~~~d--~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~~Lk  574 (1025)
T KOG4258|consen  497 TVTSADSILLRWERYQPPD--MRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLDGLK  574 (1025)
T ss_pred             EEeecceeEEEecccCCcc--hhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehhcCC
Confidence            3456789999999766543  345889999988431             1234655443322        1257889999


Q ss_pred             CCCeEEEEEEEEe--ccccC--CCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCC
Q psy15127        478 PDTSYMFIVRAEN--SHGLG--IPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGS  553 (633)
Q Consensus       478 p~~~Y~~~v~a~n--~~G~g--~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~  553 (633)
                      |.|.|-+-|.+..  .++..  ..|... .++|..+.|++|-...                ...-+++.|.|+|++|   
T Consensus       575 P~TqYAvfVkT~t~t~~~~~~~A~S~I~-YvqT~~~~PspPl~~l----------------s~snsSsqi~l~W~pP---  634 (1025)
T KOG4258|consen  575 PWTQYAVFVKTLTVTEAHEAYEAKSKIG-YVQTLPDIPSPPLDVL----------------SKSNSSSQILLKWKPP---  634 (1025)
T ss_pred             ccceeEEEEeeeehhhhccccccccceE-EEEecCCCCCCcchhh----------------hccCcchheeEEecCC---
Confidence            9999999999872  23332  235554 6899999988887652                2233456899999977   


Q ss_pred             CcccccchhhhhcceeEEEEEEcCCC
Q psy15127        554 VPQHLLDEARARLGTKVVNLRELIPT  579 (633)
Q Consensus       554 ~p~~~~~~~~~i~~y~~i~~~~~~~~  579 (633)
                           ..++|.++.| .+.|+....+
T Consensus       635 -----~~pNG~lt~Y-lv~wer~~~~  654 (1025)
T KOG4258|consen  635 -----SQPNGNLTHY-LVVWERQAED  654 (1025)
T ss_pred             -----CCCCCceeEE-EEEEEeccCC
Confidence                 7889999999 9988765443

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.56  E-value=0.00048  Score=53.97  Aligned_cols=41  Identities=15%  Similarity=0.302  Sum_probs=33.1

Q ss_pred             cccCCCceEEecCCcEEEEEeCCCCCCCCe--EEEEECCEEec
Q psy15127        164 FRAEPKDTRVASGETALLECGPPKGQPEPT--LHWKKNGQFID  204 (633)
Q Consensus       164 ~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~--i~W~~~~~~~~  204 (633)
                      +.+.+....+.+|+.++|.|.+..+.|.+.  |.|++++..+.
T Consensus         4 V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~   46 (100)
T cd05755           4 VELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLS   46 (100)
T ss_pred             EEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcc
Confidence            344555556789999999999888899886  79999988775

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.53  E-value=0.00063  Score=53.88  Aligned_cols=78  Identities=21%  Similarity=0.279  Sum_probs=50.2

Q ss_pred             CceEEEEEEEeeecCC-eeEEEECCE----EEEec-c--C----Cc-cceEEE----ccCceEEEcCCCCCCCeEEEEEE
Q psy15127        255 PRVNRLSCFAEGSPLP-SVFWTQEGS----QVLMF-P--G----NA-YGHLHV----TQEGTLRIQGVQKEDAGFFVCSA  317 (633)
Q Consensus       255 g~~~~l~C~~~g~p~~-~v~W~~~g~----~~~~~-~--~----~~-~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~a  317 (633)
                      |++++|.|........ .+.|+|...    .+... .  +    .. ..+...    ..+.+|.|.+++.+|+|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            6789999987654433 699998532    11111 1  0    01 112222    13447999999999999999998


Q ss_pred             E-eCCceeEEEEEEEE
Q psy15127        318 L-SVAGSTTVRAFLQV  332 (633)
Q Consensus       318 ~-n~~g~~~~~~~l~v  332 (633)
                      . .+.|..+..+.|+|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            6 45677777777765

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.49  E-value=0.00081  Score=58.07  Aligned_cols=87  Identities=14%  Similarity=0.232  Sum_probs=60.8

Q ss_pred             eeEEecCCceEEEEEEEe-eecCCeeEEEECCEEEEeccCC------cc-ceEEE----ccCceEEEcCCCCCCCeEEEE
Q psy15127        248 SLLIWNHPRVNRLSCFAE-GSPLPSVFWTQEGSQVLMFPGN------AY-GHLHV----TQEGTLRIQGVQKEDAGFFVC  315 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~-g~p~~~v~W~~~g~~~~~~~~~------~~-~~~~~----~~~~~l~i~~~~~~d~G~Y~C  315 (633)
                      ..+.+.+|++++|.|... +...+.+.|.|....+......      .+ .|+..    ..+..|+|.+++.+|+|.|.|
T Consensus        23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C  102 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC  102 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence            345678899999999984 5567899999975443322211      11 23332    134579999999999999999


Q ss_pred             EEEe-CCc-eeEEEEEEEEEe
Q psy15127        316 SALS-VAG-STTVRAFLQVRE  334 (633)
Q Consensus       316 ~a~n-~~g-~~~~~~~l~v~~  334 (633)
                      .... +.| ..+..+-|.|..
T Consensus       103 ~F~tfp~G~~~~gt~CLtVt~  123 (189)
T PHA02987        103 IFNTLLSKNNEKGVVCLNVTT  123 (189)
T ss_pred             EEEecCCCCCceeEEEEEEEc
Confidence            9854 446 677778888874

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.48  E-value=0.00048  Score=52.50  Aligned_cols=61  Identities=16%  Similarity=0.310  Sum_probs=41.4

Q ss_pred             EEEEEEEeee-cCCeeEEEECCEEEEeccCCccceEEEccC-------ceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127        258 NRLSCFAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQE-------GTLRIQGVQKEDAGFFVCSALSVAG  322 (633)
Q Consensus       258 ~~l~C~~~g~-p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~-------~~l~i~~~~~~d~G~Y~C~a~n~~g  322 (633)
                      ++|.|.+.|. |.+.|+|+++|..+...   . .......+       +.|.+.....+|...|+|+|.+...
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~---~-~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l   70 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGA---P-TSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL   70 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCc---c-eeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence            5799999775 88899999999876421   1 11122222       2355555566778999999988753

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.47  E-value=0.0082  Score=59.05  Aligned_cols=78  Identities=19%  Similarity=0.263  Sum_probs=58.4

Q ss_pred             eEEEccCCCCCCeEEEEEEEeCCceEE--EEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCC--eEEEEEC
Q psy15127        124 SLQIENVGPQDEGLYICDVENLVGSIS--LRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP--TLHWKKN  199 (633)
Q Consensus       124 ~L~i~~v~~~d~G~Y~C~~~n~~g~~s--~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~i~W~~~  199 (633)
                      .|+|..++..++|.|+=.+.+..+...  ..+.|....+ |.+.+.+  ..+.+|+...-.|.+...+|..  .+.|++|
T Consensus       199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~-Psvsv~~--~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d  275 (486)
T PHA03273        199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNA-PLVDLSV--HPSLKGENYRAVCVVASYFPHSSVKLRWYKN  275 (486)
T ss_pred             ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecC-CcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            499999999999999877655544433  3444444555 6555444  3578999999999987777764  8999999


Q ss_pred             CEEec
Q psy15127        200 GQFID  204 (633)
Q Consensus       200 ~~~~~  204 (633)
                      |.++.
T Consensus       276 g~~V~  280 (486)
T PHA03273        276 AKEVD  280 (486)
T ss_pred             Ceecc
Confidence            99988

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.45  E-value=0.00039  Score=55.24  Aligned_cols=68  Identities=16%  Similarity=0.277  Sum_probs=45.6

Q ss_pred             ecCCceEEEEEEEeee--cCCeeEEEECCE--E---EEecc----CCccceEEEcc---CceEEEcCCCCCCCeEEEEEE
Q psy15127        252 WNHPRVNRLSCFAEGS--PLPSVFWTQEGS--Q---VLMFP----GNAYGHLHVTQ---EGTLRIQGVQKEDAGFFVCSA  317 (633)
Q Consensus       252 ~~~g~~~~l~C~~~g~--p~~~v~W~~~g~--~---~~~~~----~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a  317 (633)
                      +..|++++|.|...+.  ....+.|++...  .   +....    .....++....   ...|.|.+++.+|+|.|.|.+
T Consensus         3 v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~   82 (98)
T cd04984           3 VSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQV   82 (98)
T ss_pred             cCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEEE
Confidence            5678999999998765  456799987432  1   11110    01123444332   236999999999999999998


Q ss_pred             Ee
Q psy15127        318 LS  319 (633)
Q Consensus       318 ~n  319 (633)
                      .+
T Consensus        83 ~~   84 (98)
T cd04984          83 WD   84 (98)
T ss_pred             cc
Confidence            65

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PHA03270 envelope glycoprotein C; Provisional

Probab=97.38  E-value=0.015  Score=56.76  Aligned_cols=80  Identities=15%  Similarity=0.223  Sum_probs=61.8

Q ss_pred             ceEEEccCCCCCCeEEEEEEEeCCce--EEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCC--eEEEEE
Q psy15127        123 RSLQIENVGPQDEGLYICDVENLVGS--ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP--TLHWKK  198 (633)
Q Consensus       123 ~~L~i~~v~~~d~G~Y~C~~~n~~g~--~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~i~W~~  198 (633)
                      ..|.|..++...+|.|+=.+-+..+.  ..+.+.|....+ |.+.+.+.  .+.+|+...-.|.+...+|.-  .+.|++
T Consensus       182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~-Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~  258 (466)
T PHA03270        182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRR-PSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFE  258 (466)
T ss_pred             ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecC-CcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence            46999999999999999998765554  345555665555 66554443  478999999999988877765  899999


Q ss_pred             CCEEecc
Q psy15127        199 NGQFIDL  205 (633)
Q Consensus       199 ~~~~~~~  205 (633)
                      ||.++..
T Consensus       259 ng~~V~~  265 (466)
T PHA03270        259 GGDEVFA  265 (466)
T ss_pred             CCccccC
Confidence            9998863

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.37  E-value=0.00052  Score=55.07  Aligned_cols=62  Identities=23%  Similarity=0.329  Sum_probs=43.0

Q ss_pred             EEEcCCeEEEEEEEeccCCCeEEEEeCCc----cC------CC-------------CCeEE---cccceEEEccCCCCCC
Q psy15127         82 TVLSGSVVEFVCRVGGDPLPTILWRRDDG----KM------PT-------------GRAKI---LDDRSLQIENVGPQDE  135 (633)
Q Consensus        82 ~~~~G~~~~L~C~~~~~p~p~i~W~~~~~----~i------~~-------------~~~~~---~~~~~L~i~~v~~~d~  135 (633)
                      .+.+|++++|.|.........+.|+|...    ..      ..             .++..   .....|+|.+++.+|+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            47899999999998654445699998542    11      00             01111   0123699999999999


Q ss_pred             eEEEEEEE
Q psy15127        136 GLYICDVE  143 (633)
Q Consensus       136 G~Y~C~~~  143 (633)
                      |.|.|.+.
T Consensus        82 gtY~Ca~~   89 (104)
T cd05720          82 GYYFCSVA   89 (104)
T ss_pred             EEEEEEEc
Confidence            99999875

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=97.37  E-value=0.00039  Score=54.58  Aligned_cols=66  Identities=14%  Similarity=0.165  Sum_probs=44.9

Q ss_pred             EEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEE
Q psy15127        250 LIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  318 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  318 (633)
                      .++.+|++|+|.|.... +...+.|+|+|.........  ..........+.|..++.+|+|.|.|...
T Consensus        10 ~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~--~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711          10 PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLY--EKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecc--cccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            45668999999998755 55689999998653210000  00001123378999999999999999974

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.37  E-value=0.00083  Score=50.14  Aligned_cols=57  Identities=25%  Similarity=0.441  Sum_probs=39.7

Q ss_pred             EEEEEEEecc-CC-CeEEEEeCCccCCCCCeE----Eccc------ceEEEccCCCCCCeEEEEEEEeC
Q psy15127         89 VEFVCRVGGD-PL-PTILWRRDDGKMPTGRAK----ILDD------RSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        89 ~~L~C~~~~~-p~-p~i~W~~~~~~i~~~~~~----~~~~------~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      ++|.|.+.|. |. ..++|+|+|+++..+...    ...+      +.|.|.....++...|+|.|...
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~   70 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE   70 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence            6899999885 44 589999999875432111    1112      35777666778889999999764

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.36  E-value=0.015  Score=57.49  Aligned_cols=79  Identities=20%  Similarity=0.187  Sum_probs=59.4

Q ss_pred             eEEEccCCCCCCeEEEEEEEeCC-ce--EEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCC--eEEEEE
Q psy15127        124 SLQIENVGPQDEGLYICDVENLV-GS--ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP--TLHWKK  198 (633)
Q Consensus       124 ~L~i~~v~~~d~G~Y~C~~~n~~-g~--~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~i~W~~  198 (633)
                      .|.|.+++..++|.|+=++.+.. +.  .+..+.|.+..+ |.+.+.+  ..+.+|+...-.|.+...+|..  .+.|++
T Consensus       290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~-PsVsV~p--~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~  366 (566)
T PHA03269        290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKR-PNITVIG--DPVLLGNPYAAYCKVNKYYPPHSVIVKWTS  366 (566)
T ss_pred             ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecC-CCccccC--CccccCCCceEEEEeeeecCCCceEEEEEe
Confidence            59999999999999987765322 22  345566666665 5554443  3578999999999987777764  899999


Q ss_pred             CCEEecc
Q psy15127        199 NGQFIDL  205 (633)
Q Consensus       199 ~~~~~~~  205 (633)
                      ||.++..
T Consensus       367 ng~~V~~  373 (566)
T PHA03269        367 NFGNIGK  373 (566)
T ss_pred             CCcccCc
Confidence            9998874

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.35  E-value=0.00095  Score=50.80  Aligned_cols=63  Identities=16%  Similarity=0.255  Sum_probs=41.6

Q ss_pred             EEEEEEEee-ecCCeeEEEECCEEEEeccC-----CccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127        258 NRLSCFAEG-SPLPSVFWTQEGSQVLMFPG-----NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG  322 (633)
Q Consensus       258 ~~l~C~~~g-~p~~~v~W~~~g~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  322 (633)
                      ++|.|.+.| +|...++|+++|..+.....     ...+  .....+.|.+..-..++...|+|+|.+..-
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~--t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l   70 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRK--TFTVSSTLDFRVDRSDDGVAIICRVDHESL   70 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCC--EEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence            589999977 56679999999998642110     0000  111223567776667778899999987653

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.35  E-value=0.0011  Score=51.96  Aligned_cols=73  Identities=22%  Similarity=0.310  Sum_probs=43.2

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEecc-CCC-eEEEEeCCccCCCC----CeEEcccceE---EEccCCCCCCeEEEEE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGD-PLP-TILWRRDDGKMPTG----RAKILDDRSL---QIENVGPQDEGLYICD  141 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~-p~p-~i~W~~~~~~i~~~----~~~~~~~~~L---~i~~v~~~d~G~Y~C~  141 (633)
                      +|.+...+....   |+.++|.|.+.|. |.. .++|+++|+.+..+    ......++++   ....+..++.+.|+|.
T Consensus         2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~   78 (93)
T cd07698           2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCR   78 (93)
T ss_pred             CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEE
Confidence            455443333322   7789999999985 543 79999999633211    1111122221   1223344588999999


Q ss_pred             EEeCC
Q psy15127        142 VENLV  146 (633)
Q Consensus       142 ~~n~~  146 (633)
                      +.+..
T Consensus        79 V~H~~   83 (93)
T cd07698          79 VEHSG   83 (93)
T ss_pred             EEeCC
Confidence            98654

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.29  E-value=0.0022  Score=50.14  Aligned_cols=75  Identities=20%  Similarity=0.383  Sum_probs=47.8

Q ss_pred             ceEEEEEEEeeec-CCeeEEEECCE----EEEeccC--------CccceEEEc----cCceEEEcCCCCCCCeEEEEEEE
Q psy15127        256 RVNRLSCFAEGSP-LPSVFWTQEGS----QVLMFPG--------NAYGHLHVT----QEGTLRIQGVQKEDAGFFVCSAL  318 (633)
Q Consensus       256 ~~~~l~C~~~g~p-~~~v~W~~~g~----~~~~~~~--------~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~  318 (633)
                      +.++|.|...... ..++.|.|...    .+.....        .-..|+...    .+.+|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            3578999875432 34788988532    2322111        111344433    35689999999999999999985


Q ss_pred             e-CCceeEEEEEE
Q psy15127        319 S-VAGSTTVRAFL  330 (633)
Q Consensus       319 n-~~g~~~~~~~l  330 (633)
                      . +.|..++.+.+
T Consensus        81 t~P~g~~~~~i~~   93 (96)
T cd05889          81 TYPQGSWEKVIEV   93 (96)
T ss_pred             eCCCCCeEEEEEE
Confidence            5 46776666554

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.28  E-value=0.00052  Score=48.02  Aligned_cols=52  Identities=29%  Similarity=0.575  Sum_probs=37.1

Q ss_pred             EcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         84 LSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        84 ~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      ..|.+|+|+|...+.   .+.|++++..+...      +..+.+.+-. +++|.|+|.+.+.
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~------~~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGS------DEKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCCccCCCC------CceEEeeccC-CCCceEEEEeCCC
Confidence            468999999975422   39999999766542      2244455555 8899999998543

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd00096 Ig Immunoglobulin domain

Probab=97.27  E-value=0.001  Score=48.70  Aligned_cols=64  Identities=28%  Similarity=0.475  Sum_probs=44.6

Q ss_pred             EEEEEEEeeecCCeeEEEECCEEEEeccCC--ccceEEEccCceEEEcCCCCCCCeEEEEEEEeCC
Q psy15127        258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGN--AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA  321 (633)
Q Consensus       258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  321 (633)
                      +.|.|.+.+.+...+.|++++.........  ............|.|.++...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            468999988777899999988754311100  0011122334479999999999999999998765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.24  E-value=0.00065  Score=53.93  Aligned_cols=75  Identities=20%  Similarity=0.381  Sum_probs=47.7

Q ss_pred             CeeeeC-CCceEEEcCCeEEEEEEEecc-C-CCeEEEEeCCccCCCCCe----EEccc------ceEEEccCCCCCCeEE
Q psy15127         72 PFPISE-PSDATVLSGSVVEFVCRVGGD-P-LPTILWRRDDGKMPTGRA----KILDD------RSLQIENVGPQDEGLY  138 (633)
Q Consensus        72 p~~~~~-~~~~~~~~G~~~~L~C~~~~~-p-~p~i~W~~~~~~i~~~~~----~~~~~------~~L~i~~v~~~d~G~Y  138 (633)
                      |.+..- |.......++.++|.|.+.|. | ...|+|++||..+..+..    ....+      +.|.+..-..++...|
T Consensus         2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~   81 (100)
T cd07699           2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVY   81 (100)
T ss_pred             CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeE
Confidence            444333 333345567889999999874 4 447999999998753211    11112      3465655555567899


Q ss_pred             EEEEEeCC
Q psy15127        139 ICDVENLV  146 (633)
Q Consensus       139 ~C~~~n~~  146 (633)
                      +|.|....
T Consensus        82 sC~V~H~~   89 (100)
T cd07699          82 TCEVTHEG   89 (100)
T ss_pred             EEEEEecC
Confidence            99997654

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.22  E-value=0.0011  Score=52.58  Aligned_cols=71  Identities=18%  Similarity=0.289  Sum_probs=47.0

Q ss_pred             EecCCceEEEEEEEee-ecCCeeEEEECCE----EEEec----cCCccceEEEcc-----CceEEEcCCCCCCCeEEEEE
Q psy15127        251 IWNHPRVNRLSCFAEG-SPLPSVFWTQEGS----QVLMF----PGNAYGHLHVTQ-----EGTLRIQGVQKEDAGFFVCS  316 (633)
Q Consensus       251 ~~~~g~~~~l~C~~~g-~p~~~v~W~~~g~----~~~~~----~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~  316 (633)
                      ...+|++++|.|.... .....+.|+|...    .+...    ......+.....     ...|.|.+++.+|+|.|.|.
T Consensus         3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   82 (98)
T cd05716           3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG   82 (98)
T ss_pred             EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence            4567899999999865 3456889998542    11100    011123444321     23799999999999999999


Q ss_pred             EEeCC
Q psy15127        317 ALSVA  321 (633)
Q Consensus       317 a~n~~  321 (633)
                      +....
T Consensus        83 ~~~~~   87 (98)
T cd05716          83 VGDDG   87 (98)
T ss_pred             cccCC
Confidence            87653

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.21  E-value=0.0013  Score=51.41  Aligned_cols=64  Identities=14%  Similarity=0.279  Sum_probs=42.6

Q ss_pred             cCCeEEEEEEEecc-CC-CeEEEEeCCccCCCCC----e------EEcccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         85 SGSVVEFVCRVGGD-PL-PTILWRRDDGKMPTGR----A------KILDDRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        85 ~G~~~~L~C~~~~~-p~-p~i~W~~~~~~i~~~~----~------~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      .++.++|.|.+.|. |. ..|+|+++|..+..+.    .      .+.....|.|..-...+...|+|.|......
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~   88 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT   88 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence            45679999999884 43 4799999999863321    1      1111235666555555778999999876544

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.21  E-value=0.003  Score=51.03  Aligned_cols=64  Identities=20%  Similarity=0.431  Sum_probs=41.7

Q ss_pred             EEEcCCeEEEEEEEecc-CC-CeEEEEeCCccCCCCCeEEc--c-------cceEEEccCCCCCCe-EEEEEEEeCC
Q psy15127         82 TVLSGSVVEFVCRVGGD-PL-PTILWRRDDGKMPTGRAKIL--D-------DRSLQIENVGPQDEG-LYICDVENLV  146 (633)
Q Consensus        82 ~~~~G~~~~L~C~~~~~-p~-p~i~W~~~~~~i~~~~~~~~--~-------~~~L~i~~v~~~d~G-~Y~C~~~n~~  146 (633)
                      ....|+.++|.|.+.+. |. ..++|+|||..+........  .       .+.|.+.. ...|.| .|+|.+....
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence            34578889999999874 53 58999999998754311111  1       23455543 344444 5999998754

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.19  E-value=0.0015  Score=46.07  Aligned_cols=60  Identities=17%  Similarity=0.298  Sum_probs=42.0

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy15127         86 GSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHL  159 (633)
Q Consensus        86 G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~  159 (633)
                      ...|.|.|.+.    ..|.|++ |..+...     ...+|.+..+..+-.|.|.|.+.+    .+....|.|..
T Consensus         6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~-----~~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVyY   65 (69)
T cd07691           6 EGKVFLKCNGA----TNITWKK-GKEILEV-----SNTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVYY   65 (69)
T ss_pred             CceEEEEecCC----CcEEEec-Ccccccc-----cccEEeccCcccCCCcceEecCcc----CCCcEEEEEEE
Confidence            45799999652    4599999 5544321     145888999999999999999866    23344555554

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>KOG0613|consensus

Probab=97.17  E-value=0.0053  Score=68.14  Aligned_cols=82  Identities=12%  Similarity=0.020  Sum_probs=55.8

Q ss_pred             ecCCceEEEEEEEeeecCCe-eEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy15127        252 WNHPRVNRLSCFAEGSPLPS-VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL  330 (633)
Q Consensus       252 ~~~g~~~~l~C~~~g~p~~~-v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  330 (633)
                      ...+..+++.|...+.+.+. +.|++++.......+......+......+.|.++...+.+.|.|.|.|..|........
T Consensus       346 a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~  425 (1205)
T KOG0613|consen  346 ARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAES  425 (1205)
T ss_pred             cccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchh
Confidence            34456788888888888875 89998776543322222222222233468899999999999999999999877655544


Q ss_pred             EEE
Q psy15127        331 QVR  333 (633)
Q Consensus       331 ~v~  333 (633)
                      .+.
T Consensus       426 ~vs  428 (1205)
T KOG0613|consen  426 TVS  428 (1205)
T ss_pred             hcc
Confidence            444

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.15  E-value=0.0034  Score=46.82  Aligned_cols=61  Identities=21%  Similarity=0.407  Sum_probs=38.9

Q ss_pred             EEEEEEEeee-cC-CeeEEEECCEEEEeccCCccceEEEccCc------eEEEcCCCCCCCeEEEEEEEeC
Q psy15127        258 NRLSCFAEGS-PL-PSVFWTQEGSQVLMFPGNAYGHLHVTQEG------TLRIQGVQKEDAGFFVCSALSV  320 (633)
Q Consensus       258 ~~l~C~~~g~-p~-~~v~W~~~g~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~G~Y~C~a~n~  320 (633)
                      ++|.|.+.|. |+ ..++|++||..+..  +..........++      .|.|.....++...|+|.+...
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~--~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~   70 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTS--GVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE   70 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCC--CEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence            6899999986 44 58999999986321  1111111112222      4666655667788999999664

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.13  E-value=0.0016  Score=52.70  Aligned_cols=69  Identities=22%  Similarity=0.384  Sum_probs=44.2

Q ss_pred             EecCCceEEEEEEEeeec-CCeeEEEECCEE-----EE----eccC--------CccceEEE--cc---CceEEEcCCCC
Q psy15127        251 IWNHPRVNRLSCFAEGSP-LPSVFWTQEGSQ-----VL----MFPG--------NAYGHLHV--TQ---EGTLRIQGVQK  307 (633)
Q Consensus       251 ~~~~g~~~~l~C~~~g~p-~~~v~W~~~g~~-----~~----~~~~--------~~~~~~~~--~~---~~~l~i~~~~~  307 (633)
                      .+.+|++++|.|.+.+.. ...+.|++....     +.    ....        ....+...  ..   ...|.|.++..
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            456789999999987643 457999984321     10    0000        00123332  11   12599999999


Q ss_pred             CCCeEEEEEEEe
Q psy15127        308 EDAGFFVCSALS  319 (633)
Q Consensus       308 ~d~G~Y~C~a~n  319 (633)
                      +|+|.|.|...+
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999999853

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.13  E-value=0.0011  Score=50.42  Aligned_cols=55  Identities=33%  Similarity=0.610  Sum_probs=36.6

Q ss_pred             eEEEEEEEeccCCC--eEEEEeCCc--cC------C-----------CCCeEEcc-----cceEEEccCCCCCCeEEEEE
Q psy15127         88 VVEFVCRVGGDPLP--TILWRRDDG--KM------P-----------TGRAKILD-----DRSLQIENVGPQDEGLYICD  141 (633)
Q Consensus        88 ~~~L~C~~~~~p~p--~i~W~~~~~--~i------~-----------~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~  141 (633)
                      ++.|.|.+.....+  .+.|++...  ..      .           .++.....     +.+|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            47899998754443  689988542  11      0           12222221     24699999999999999996


Q ss_pred             E
Q psy15127        142 V  142 (633)
Q Consensus       142 ~  142 (633)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            3

>KOG4367|consensus

Probab=97.13  E-value=0.00029  Score=67.48  Aligned_cols=73  Identities=16%  Similarity=0.143  Sum_probs=59.3

Q ss_pred             ccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEE
Q psy15127        539 ASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEF  618 (633)
Q Consensus       539 ~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~  618 (633)
                      ..++++|.|+-|        ...+.+.+|| .++....+.+.       +     .+| ..+.++..+++||.-++.|..
T Consensus       451 ~nns~t~~wkqp--------~~~~~~~dg~-~leld~g~~g~-------f-----rev-y~g~etmctvdglhfns~y~a  508 (699)
T KOG4367|consen  451 HNNSATLSWKQP--------PLSTVPADGY-ILELDDGNGGQ-------F-----REV-YVGKETMCTVDGLHFNSTYNA  508 (699)
T ss_pred             cCCceEEEeecC--------CCCCCCCcce-EEEeecCCCCc-------e-----eEE-EecCceeEEecceecchhHHH
Confidence            478999999954        3567899999 99987765543       2     233 346789999999999999999


Q ss_pred             EEeccccccccccCC
Q psy15127        619 FLVPFFKTVEGARLD  633 (633)
Q Consensus       619 ~v~a~n~~g~g~~s~  633 (633)
                      ||.|+|+.|+++-|+
T Consensus       509 rvka~n~tg~s~ys~  523 (699)
T KOG4367|consen  509 RVKAFNKTGVSPYSK  523 (699)
T ss_pred             HHHHhhccCCCcccc
Confidence            999999999998764

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.10  E-value=0.0019  Score=51.79  Aligned_cols=68  Identities=19%  Similarity=0.338  Sum_probs=44.5

Q ss_pred             ecCCceEEEEEEEeeecCCeeEEEECCEE-------EEeccC-C---------ccceEEEc---cCceEEEcCCCCCCCe
Q psy15127        252 WNHPRVNRLSCFAEGSPLPSVFWTQEGSQ-------VLMFPG-N---------AYGHLHVT---QEGTLRIQGVQKEDAG  311 (633)
Q Consensus       252 ~~~g~~~~l~C~~~g~p~~~v~W~~~g~~-------~~~~~~-~---------~~~~~~~~---~~~~l~i~~~~~~d~G  311 (633)
                      +..|++++|.|.........+.|++....       +..... .         ...++...   ....|.|.++..+|+|
T Consensus         3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg   82 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG   82 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence            45789999999986655567999984321       111110 0         02233322   2236999999999999


Q ss_pred             EEEEEEEe
Q psy15127        312 FFVCSALS  319 (633)
Q Consensus       312 ~Y~C~a~n  319 (633)
                      .|.|.+.+
T Consensus        83 tY~Ca~~~   90 (104)
T cd05720          83 YYFCSVAS   90 (104)
T ss_pred             EEEEEEcc
Confidence            99998764

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.10  E-value=0.001  Score=52.96  Aligned_cols=71  Identities=13%  Similarity=0.243  Sum_probs=44.3

Q ss_pred             eCCCceEEEcCCeEEEEEEEecc-CCC-eEEEEeCCccCCCCC-------------eEEcccceEEEccCCCCCCeEEEE
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGD-PLP-TILWRRDDGKMPTGR-------------AKILDDRSLQIENVGPQDEGLYIC  140 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~-p~p-~i~W~~~~~~i~~~~-------------~~~~~~~~L~i~~v~~~d~G~Y~C  140 (633)
                      ..|+...+..|..++|.|.+.|. |.. .++|+++|.++....             ..+.....|.|..-...+...|+|
T Consensus         6 ~~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC   85 (102)
T cd05768           6 LPPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTC   85 (102)
T ss_pred             eCcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEE
Confidence            34444445567899999999985 433 689999998774321             111112345554333456678999


Q ss_pred             EEEeCC
Q psy15127        141 DVENLV  146 (633)
Q Consensus       141 ~~~n~~  146 (633)
                      .|....
T Consensus        86 ~V~H~~   91 (102)
T cd05768          86 VVGHEA   91 (102)
T ss_pred             EeEeCC
Confidence            997643

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.05  E-value=0.19  Score=49.04  Aligned_cols=82  Identities=18%  Similarity=0.224  Sum_probs=59.8

Q ss_pred             ceEEEccCCCCCCeEEEEEEEeCCce--EEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCC--eEEEEE
Q psy15127        123 RSLQIENVGPQDEGLYICDVENLVGS--ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP--TLHWKK  198 (633)
Q Consensus       123 ~~L~i~~v~~~d~G~Y~C~~~n~~g~--~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~i~W~~  198 (633)
                      -.|.|.++...|+|.|.-...+....  ..+.+.+.+...+|.+.+.+.  .+..|+...-.|.+...+|+-  .+.|++
T Consensus       207 m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~  284 (490)
T PHA03271        207 MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWRQ  284 (490)
T ss_pred             eeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence            36999999999999775554444333  355566666666565655543  478999999999987777764  899999


Q ss_pred             CCEEeccC
Q psy15127        199 NGQFIDLE  206 (633)
Q Consensus       199 ~~~~~~~~  206 (633)
                      ||.++...
T Consensus       285 nG~~V~~~  292 (490)
T PHA03271        285 NGNIATPR  292 (490)
T ss_pred             CCccccCc
Confidence            99887643

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.02  E-value=0.0018  Score=53.25  Aligned_cols=34  Identities=24%  Similarity=0.383  Sum_probs=25.3

Q ss_pred             cCCCceEEecCCcEEEEEeCCCCCCCCeEEEEEC
Q psy15127        166 AEPKDTRVASGETALLECGPPKGQPEPTLHWKKN  199 (633)
Q Consensus       166 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~  199 (633)
                      ..|....+..|++++|.|..........+.|+|.
T Consensus         4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq   37 (116)
T cd07706           4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQ   37 (116)
T ss_pred             EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEE
Confidence            4566778899999999998433334568999874

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PHA02633 hypothetical protein; Provisional

Probab=97.01  E-value=0.0022  Score=43.92  Aligned_cols=40  Identities=25%  Similarity=0.350  Sum_probs=33.8

Q ss_pred             ccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEee
Q psy15127        121 DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLL  160 (633)
Q Consensus       121 ~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~  160 (633)
                      .+..|.|.++..+|+|.|.|..+|..-....++.|.|...
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~   55 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR   55 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence            3457999999999999999999988777777788888764

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.00  E-value=0.0066  Score=49.01  Aligned_cols=35  Identities=26%  Similarity=0.517  Sum_probs=28.1

Q ss_pred             ceEEecCCcEEEEEeCCCCCCC-CeEEEEECCEEec
Q psy15127        170 DTRVASGETALLECGPPKGQPE-PTLHWKKNGQFID  204 (633)
Q Consensus       170 ~~~~~~g~~~~l~C~~~~~~p~-~~i~W~~~~~~~~  204 (633)
                      ......|+.++|.|.+...+|. ..++|+|||..+.
T Consensus        15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~   50 (111)
T cd05772          15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELS   50 (111)
T ss_pred             hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECc
Confidence            3345578889999997777785 6999999999875

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.96  E-value=0.0022  Score=50.28  Aligned_cols=70  Identities=20%  Similarity=0.328  Sum_probs=42.8

Q ss_pred             CCCceEEEcCCeEEEEEEEecc--CC-CeEEEEeCCccC-CC--------CCeEEcccceEEEccCCCCCCeEEEEEEEe
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGD--PL-PTILWRRDDGKM-PT--------GRAKILDDRSLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~--p~-p~i~W~~~~~~i-~~--------~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                      .|..-.+..|+.++|.|.+.|.  |. ..++|+|++... ..        +...+.-.+.|.+..-...+.-.|+|.|..
T Consensus         5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H   84 (96)
T cd07696           5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH   84 (96)
T ss_pred             CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence            3444446678999999999987  33 268999987432 11        011111123455554444456789999976


Q ss_pred             CC
Q psy15127        145 LV  146 (633)
Q Consensus       145 ~~  146 (633)
                      ..
T Consensus        85 ~~   86 (96)
T cd07696          85 PD   86 (96)
T ss_pred             CC
Confidence            53

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=96.96  E-value=0.0041  Score=48.61  Aligned_cols=63  Identities=16%  Similarity=0.215  Sum_probs=41.9

Q ss_pred             CCeEEEEEEE-eccCCCeEEEEeCCccCCCC------CeEEcccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         86 GSVVEFVCRV-GGDPLPTILWRRDDGKMPTG------RAKILDDRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        86 G~~~~L~C~~-~~~p~p~i~W~~~~~~i~~~------~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      .....+.|.+ .|.|.+.|+|+++.......      .....-.+.|.+.....+|...|+|++.+....
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~   84 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ   84 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            4567889998 57899999999972211110      111111246777777777888999999887543

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=96.95  E-value=0.0062  Score=47.30  Aligned_cols=61  Identities=21%  Similarity=0.309  Sum_probs=40.2

Q ss_pred             EcCCeEEEEEEEecc-C-CCeEEEEeCCccCCCCCe----EEcccceEEE---ccCCCCCCeEEEEEEEeC
Q psy15127         84 LSGSVVEFVCRVGGD-P-LPTILWRRDDGKMPTGRA----KILDDRSLQI---ENVGPQDEGLYICDVENL  145 (633)
Q Consensus        84 ~~G~~~~L~C~~~~~-p-~p~i~W~~~~~~i~~~~~----~~~~~~~L~i---~~v~~~d~G~Y~C~~~n~  145 (633)
                      ..|+..+|.|.+.|. | ...++|+|||+.+. +..    ....+++..+   ..+...+...|+|.+...
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~   82 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN   82 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence            457778999999884 4 34689999999876 321    1122333222   123567888999999764

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.94  E-value=0.0054  Score=48.03  Aligned_cols=65  Identities=23%  Similarity=0.363  Sum_probs=38.9

Q ss_pred             CceEEEEEEEeeecCC--eeEEEECCEEEEeccCCccceEEEccCceEEE---cCCCCCCCeEEEEEEEeCC
Q psy15127        255 PRVNRLSCFAEGSPLP--SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRI---QGVQKEDAGFFVCSALSVA  321 (633)
Q Consensus       255 g~~~~l~C~~~g~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i---~~~~~~d~G~Y~C~a~n~~  321 (633)
                      ++.++|.|.+.|..++  .++|.++|..+..  ...........++++.+   ..+...+.+.|+|.+....
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~--~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVD--DVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcc--cccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            5789999999996443  8999999963221  11111222233333221   2233347899999997653

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>KOG4152|consensus

Probab=96.93  E-value=0.0015  Score=64.49  Aligned_cols=133  Identities=16%  Similarity=0.179  Sum_probs=75.9

Q ss_pred             EecCCCCCeEEEEEEEEeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecC
Q psy15127        473 VSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWG  552 (633)
Q Consensus       473 i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~  552 (633)
                      =.+|.+++.|.|+|.|.|..|.|+++.....-+....-|..|...                . ..-+-..|.+.|++|  
T Consensus       651 k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~apS~~----------------r-i~k~~eGi~l~wepp--  711 (830)
T KOG4152|consen  651 KTSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAPSGA----------------R-IKKTIEGISLVWEPP--  711 (830)
T ss_pred             ccccccccceeeeeeeeeccCCCchhhheeeeeccCCCCCCcccc----------------c-ccccccceeecccCC--
Confidence            357999999999999999999999998774333344444444322                1 111345788999955  


Q ss_pred             CCcccccchhhhhcceeEEEEEEcCCCcccce-eeeeec----cceeEeecCCccceEEeeccccceeEEEEEecccccc
Q psy15127        553 SVPQHLLDEARARLGTKVVNLRELIPTASTAV-RITWEK----YNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTV  627 (633)
Q Consensus       553 ~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~-~~~w~~----~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g  627 (633)
                          . ..+.|.|..| ..+.....+...+.+ ..-..+    .....++ .+.+...-+-+...+..-.|+|.|.|+.|
T Consensus       712 ----t-~p~sg~Iiey-s~ylAi~tq~~~~~~sql~fmr~ycg~~t~c~v-t~g~l~tA~~d~t~~paivfri~aknekG  784 (830)
T KOG4152|consen  712 ----T-KPGSGTIIEY-SPYLAIITQAGATGVSQLPFMRSYCGIITTCVV-TSGKLITAVPDITTGPAIVFRIVAKNEKG  784 (830)
T ss_pred             ----C-CCCCcceEEe-ehhhHhhhhhhccCccccceeeeecccceeeEE-ecccceeeccccccCcceEEEEEecCCCC
Confidence                1 2336777777 444433322211111 000111    1111111 11222222334555778899999999999


Q ss_pred             cccc
Q psy15127        628 EGAR  631 (633)
Q Consensus       628 ~g~~  631 (633)
                      +|+.
T Consensus       785 yGpa  788 (830)
T KOG4152|consen  785 YGPA  788 (830)
T ss_pred             CCcc
Confidence            9985

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=96.90  E-value=0.0041  Score=51.06  Aligned_cols=71  Identities=18%  Similarity=0.300  Sum_probs=46.0

Q ss_pred             eEEecCCceEEEEEEEeeec--CCeeEEEECC--E-E--EE-ec--------cCCccceEEEcc---C--ceEEEcCCCC
Q psy15127        249 LLIWNHPRVNRLSCFAEGSP--LPSVFWTQEG--S-Q--VL-MF--------PGNAYGHLHVTQ---E--GTLRIQGVQK  307 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g~p--~~~v~W~~~g--~-~--~~-~~--------~~~~~~~~~~~~---~--~~l~i~~~~~  307 (633)
                      ...+.+|++++|.|...+.-  ...+.|+|..  + +  +. ..        ......++....   .  ..|.|.++..
T Consensus         6 ~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   85 (117)
T cd04981           6 PGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTP   85 (117)
T ss_pred             CeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCH
Confidence            45677899999999876543  4569999832  2 1  11 10        001123444431   1  2699999999


Q ss_pred             CCCeEEEEEEEe
Q psy15127        308 EDAGFFVCSALS  319 (633)
Q Consensus       308 ~d~G~Y~C~a~n  319 (633)
                      +|+|.|.|.+..
T Consensus        86 ~Dsa~YyCa~~~   97 (117)
T cd04981          86 EDTAVYYCARGL   97 (117)
T ss_pred             HHCEEEEEEEEc
Confidence            999999998864

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.82  E-value=0.0075  Score=47.01  Aligned_cols=59  Identities=22%  Similarity=0.419  Sum_probs=39.3

Q ss_pred             EcCCeEEEEEEEecc-CC-CeEEEEeCCccCCCCCe----EEccc------ceEEEccCCCCCCeEEEEEEEeC
Q psy15127         84 LSGSVVEFVCRVGGD-PL-PTILWRRDDGKMPTGRA----KILDD------RSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        84 ~~G~~~~L~C~~~~~-p~-p~i~W~~~~~~i~~~~~----~~~~~------~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      ..|+..+|.|.+.|. |. ..++|++||..+..+..    ....|      ..|.+.   .++...|+|.|...
T Consensus        13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~   83 (94)
T cd05767          13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW   83 (94)
T ss_pred             cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence            346668999999984 43 46899999998754321    11122      245554   35667999999764

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=96.82  E-value=0.0044  Score=50.24  Aligned_cols=71  Identities=20%  Similarity=0.339  Sum_probs=45.8

Q ss_pred             CCCceEEEcCCeEEEEEEEecc-CC-CeEEEEeCCccCCCCCe-----------EEcccceEEEccCCCCC-CeEEEEEE
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGD-PL-PTILWRRDDGKMPTGRA-----------KILDDRSLQIENVGPQD-EGLYICDV  142 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~-p~-p~i~W~~~~~~i~~~~~-----------~~~~~~~L~i~~v~~~d-~G~Y~C~~  142 (633)
                      .|....+.+++.++|.|.+.+. |. ..|+|+|||..+..+..           .+...+.|.|......| ...|+|.|
T Consensus         9 ~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V   88 (115)
T cd05769           9 PPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIV   88 (115)
T ss_pred             CcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEE
Confidence            3444445567789999999874 44 37999999988754321           11112356665544434 67999999


Q ss_pred             EeCCc
Q psy15127        143 ENLVG  147 (633)
Q Consensus       143 ~n~~g  147 (633)
                      .....
T Consensus        89 ~H~g~   93 (115)
T cd05769          89 QFYGG   93 (115)
T ss_pred             EEeCC
Confidence            86543

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=96.75  E-value=0.0091  Score=46.66  Aligned_cols=60  Identities=25%  Similarity=0.326  Sum_probs=40.1

Q ss_pred             EcCCeEEEEEEEecc-CCC-eEEEEeCCccCCCCC----eEEccc------ceEEEccCCCCCCeEEEEEEEeCC
Q psy15127         84 LSGSVVEFVCRVGGD-PLP-TILWRRDDGKMPTGR----AKILDD------RSLQIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus        84 ~~G~~~~L~C~~~~~-p~p-~i~W~~~~~~i~~~~----~~~~~~------~~L~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      ..|+.++|.|.+.|. |.. .++|++||+.+..+.    .....+      ..|.+   ..++...|+|.+....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~~   83 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHSS   83 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeCC
Confidence            468899999999884 443 789999999875431    111112      23433   3456779999998653

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=96.73  E-value=0.0084  Score=46.55  Aligned_cols=63  Identities=13%  Similarity=0.223  Sum_probs=40.5

Q ss_pred             CceEEEEEEEeeecC--CeeEEEECCEEEEeccCCccceEEEccCceEEEc---CCCCCCCeEEEEEEEeC
Q psy15127        255 PRVNRLSCFAEGSPL--PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQ---GVQKEDAGFFVCSALSV  320 (633)
Q Consensus       255 g~~~~l~C~~~g~p~--~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d~G~Y~C~a~n~  320 (633)
                      |...+|.|.+.|.-+  ..++|.+||..+.   +..........++++.+.   .+.+.+...|+|++.-.
T Consensus        15 g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~---~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~   82 (93)
T cd05770          15 GKPNVLNCYVTGFHPPDIEIRLLKNGVKIP---KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN   82 (93)
T ss_pred             CCceEEEEEEEEEeCCCCEEEEEECCEECC---CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence            456789999999644  3789999999864   112222333444443332   23456778899999664

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.73  E-value=0.0085  Score=47.81  Aligned_cols=68  Identities=10%  Similarity=0.233  Sum_probs=46.5

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccCCC---eEEEEeCCc-cCC---------------CCCeEEcc-----cceEEEccC
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDPLP---TILWRRDDG-KMP---------------TGRAKILD-----DRSLQIENV  130 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p~p---~i~W~~~~~-~i~---------------~~~~~~~~-----~~~L~i~~v  130 (633)
                      ..++....+..|..++|.|.+++.-..   .++|+|+-. .+.               .+++....     .-.|.|.++
T Consensus         2 l~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L   81 (115)
T cd05721           2 LVQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNL   81 (115)
T ss_pred             eeecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCC
Confidence            345666778999999999999765433   589998422 210               11222111     136999999


Q ss_pred             CCCCCeEEEEEE
Q psy15127        131 GPQDEGLYICDV  142 (633)
Q Consensus       131 ~~~d~G~Y~C~~  142 (633)
                      +.+|++.|.|..
T Consensus        82 ~a~DTa~Y~Ca~   93 (115)
T cd05721          82 RANQTDIYFCKI   93 (115)
T ss_pred             CHHHCeEEEEEe
Confidence            999999999975

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.70  E-value=0.0043  Score=48.16  Aligned_cols=66  Identities=21%  Similarity=0.342  Sum_probs=42.7

Q ss_pred             CceEEEEEEE-eeecCCeeEEEECCEEEEeccCCccceEEEcc------CceEEEcCCCCCCCeEEEEEEEeCCce
Q psy15127        255 PRVNRLSCFA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ------EGTLRIQGVQKEDAGFFVCSALSVAGS  323 (633)
Q Consensus       255 g~~~~l~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~a~n~~g~  323 (633)
                      ++.+.|.|.+ .|+|++.|+|+.++..+....   ........      .+.|.+..-..++...++|.|.+..-.
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASN---TTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEE---EEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeee---eeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            6899999977 567889999999998761000   00111111      125667655556778999999987543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>KOG1480|consensus

Probab=96.67  E-value=0.0008  Score=69.80  Aligned_cols=165  Identities=24%  Similarity=0.374  Sum_probs=100.7

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEc-----------ccceEEEccCCCCCCe---
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL-----------DDRSLQIENVGPQDEG---  136 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~-----------~~~~L~i~~v~~~d~G---  136 (633)
                      -|.|+..|.+..+..|..+.|.|.+.  |.++|...-++.-+.+.+....           ..-.+.|..-..++.|   
T Consensus        24 l~~~~~~p~~~yii~~~p~~l~c~a~--~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~  101 (909)
T KOG1480|consen   24 LPHFTTEPKSAYIIKNKPLRLQCKAN--PATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPE  101 (909)
T ss_pred             cceeeecCCccceecCCCccceecCC--cccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCcc
Confidence            36788999999999999999999874  4444433333333322221111           1112333333333322   


Q ss_pred             EEEE--EEEeCCceE-EEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEe
Q psy15127        137 LYIC--DVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDL  213 (633)
Q Consensus       137 ~Y~C--~~~n~~g~~-s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~  213 (633)
                      .|.|  .+....|.. +..+.+.+.+....+...|..+.|..+....+.|....+.|...+.|++++..++.+.... ..
T Consensus       102 d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~-~~  180 (909)
T KOG1480|consen  102 DYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVI-RA  180 (909)
T ss_pred             ceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccch-hh
Confidence            4555  455555531 2222333333334566778888999999999999988999999999999998887733322 22


Q ss_pred             ccceeee----EEEeeeEEEEeecCCCCC
Q psy15127        214 SRRTLGW----LRVRPLYWNVARPRANLN  238 (633)
Q Consensus       214 ~~~~~~~----~~~~g~y~C~a~~~~~~~  238 (633)
                      ....+.+    ....++|+|.|.|-++..
T Consensus       181 ~d~~li~~~arlsd~~nytc~a~ni~~~r  209 (909)
T KOG1480|consen  181 SDHNLIISQARLSDSGNYTCEATNIVAKR  209 (909)
T ss_pred             hcCCccccchhhhhcccceeeeehhhccc
Confidence            2222222    233589999999987755

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=96.66  E-value=0.007  Score=47.18  Aligned_cols=63  Identities=16%  Similarity=0.181  Sum_probs=42.2

Q ss_pred             CCeEEEEEEEe-ccCCCeEEEEeCCccCCCCCe------EEcccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         86 GSVVEFVCRVG-GDPLPTILWRRDDGKMPTGRA------KILDDRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        86 G~~~~L~C~~~-~~p~p~i~W~~~~~~i~~~~~------~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      ...+.+.|.+. |.|.+.|+|+++.........      ...-.+.|.+.....+|...|+|++.+....
T Consensus        15 ~~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~   84 (95)
T cd07703          15 IPVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQ   84 (95)
T ss_pred             CccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            35788999875 789999999998322211111      1111246777677778888999999987544

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>smart00406 IGv Immunoglobulin V-Type

Probab=96.66  E-value=0.0064  Score=46.08  Aligned_cols=61  Identities=25%  Similarity=0.480  Sum_probs=38.3

Q ss_pred             eEEEEEEEeeecCC--eeEEEECCE-----EEEecc--C------CccceEEEccC-----ceEEEcCCCCCCCeEEEEE
Q psy15127        257 VNRLSCFAEGSPLP--SVFWTQEGS-----QVLMFP--G------NAYGHLHVTQE-----GTLRIQGVQKEDAGFFVCS  316 (633)
Q Consensus       257 ~~~l~C~~~g~p~~--~v~W~~~g~-----~~~~~~--~------~~~~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~  316 (633)
                      +++|.|.+.....+  .+.|++...     .+....  .      ....++.....     .+|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            36799988765553  789988541     111110  0      11234443322     3699999999999999996


Q ss_pred             E
Q psy15127        317 A  317 (633)
Q Consensus       317 a  317 (633)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            3

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=96.63  E-value=0.01  Score=46.29  Aligned_cols=68  Identities=12%  Similarity=0.246  Sum_probs=41.3

Q ss_pred             CceEEEEEEEeeecC--CeeEEEECCEEEEeccCCccceE-----EEccCceEEEcCCCCCCCeEEEEEEEeCCce
Q psy15127        255 PRVNRLSCFAEGSPL--PSVFWTQEGSQVLMFPGNAYGHL-----HVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  323 (633)
Q Consensus       255 g~~~~l~C~~~g~p~--~~v~W~~~g~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  323 (633)
                      ++.++|.|.+.|.-+  ..|+|.++|..+..... .....     .....+.|.+..-...+...|+|.+......
T Consensus        14 ~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~-~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~   88 (94)
T cd05847          14 SETIQLLCLISGYTPGTIEVEWLVDGQVATLVAA-STAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT   88 (94)
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEECcCcee-ecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence            366899999999644  48899999987521100 00011     1111224556654455678999999876543

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PHA03269 envelope glycoprotein C; Provisional

Probab=96.62  E-value=0.12  Score=51.28  Aligned_cols=63  Identities=16%  Similarity=0.202  Sum_probs=46.1

Q ss_pred             EEEcCCCC--CCeEEEEEEe---------------cCcCCeeeeCCCceEEEcCCeEEEEEEEecc-CC--CeEEEEeCC
Q psy15127         50 LGARGALS--DDQWKLIAKE---------------ALIKPFPISEPSDATVLSGSVVEFVCRVGGD-PL--PTILWRRDD  109 (633)
Q Consensus        50 L~i~~v~~--~G~Y~C~a~~---------------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~-p~--p~i~W~~~~  109 (633)
                      |.|..++.  +|.|.=.+.+               +..+|.+...+..  +.+|+...-.|.+... |.  ..+.|++|+
T Consensus       291 L~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~P--VL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng  368 (566)
T PHA03269        291 LHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDP--VLLGNPYAAYCKVNKYYPPHSVIVKWTSNF  368 (566)
T ss_pred             eEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence            99999998  9999877543               2344544444333  6789999999999764 32  259999999


Q ss_pred             ccCCC
Q psy15127        110 GKMPT  114 (633)
Q Consensus       110 ~~i~~  114 (633)
                      .++..
T Consensus       369 ~~V~~  373 (566)
T PHA03269        369 GNIGK  373 (566)
T ss_pred             cccCc
Confidence            88864

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=96.60  E-value=0.012  Score=45.91  Aligned_cols=66  Identities=17%  Similarity=0.185  Sum_probs=39.0

Q ss_pred             CCceEEEEEEEeeecCC--eeEEEECCEEEEeccCCccceEEEccCceEEEc---CCCCCCCeEEEEEEEeCC
Q psy15127        254 HPRVNRLSCFAEGSPLP--SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQ---GVQKEDAGFFVCSALSVA  321 (633)
Q Consensus       254 ~g~~~~l~C~~~g~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d~G~Y~C~a~n~~  321 (633)
                      .++.++|.|.+.|.-++  .++|++||..+...  ..........++++.+.   .+...+...|+|.+....
T Consensus        13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~--~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~   83 (94)
T cd05766          13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEG--VVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS   83 (94)
T ss_pred             CCCCeEEEEEEeeecCCCCEEEEEECCeecCCC--ceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence            45789999999996443  78999999876421  11111222233322221   123345678999987653

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=96.59  E-value=0.012  Score=48.59  Aligned_cols=74  Identities=12%  Similarity=0.100  Sum_probs=47.3

Q ss_pred             ceeEEecCCceEEEEEEEeeec------CCeeEEEECCE-----EEEe-cc------CCccceEEEc-----cCceEEEc
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSP------LPSVFWTQEGS-----QVLM-FP------GNAYGHLHVT-----QEGTLRIQ  303 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p------~~~v~W~~~g~-----~~~~-~~------~~~~~~~~~~-----~~~~l~i~  303 (633)
                      +..+....|+.++|.|......      ...+.|++...     .+.. ..      ..-..|+...     .+.+|.|.
T Consensus         6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~   85 (119)
T cd05712           6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS   85 (119)
T ss_pred             CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence            3445778899999999875322      24689998532     1111 00      0111354442     12379999


Q ss_pred             CCCCCCCeEEEEEEEeC
Q psy15127        304 GVQKEDAGFFVCSALSV  320 (633)
Q Consensus       304 ~~~~~d~G~Y~C~a~n~  320 (633)
                      +++.+|+|.|.|.+...
T Consensus        86 ~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          86 DAQPEDSGKYFFRVELG  102 (119)
T ss_pred             cCChhhCeEEEEEEEcC
Confidence            99999999999988664

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>KOG0613|consensus

Probab=96.48  E-value=0.04  Score=61.48  Aligned_cols=211  Identities=16%  Similarity=0.119  Sum_probs=122.2

Q ss_pred             EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEeccc
Q psy15127        258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCV  337 (633)
Q Consensus       258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~  337 (633)
                      +.+.|. .|.|.+...|+++|..+..  +.....-....+..+.|..+-..+.|.|.-.+.|..+....           
T Consensus       208 v~~v~s-~gqp~~~~~~~~~g~~i~~--~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~-----------  273 (1205)
T KOG0613|consen  208 VRAVVS-AGQPEPLERWEILGELIAP--GSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK-----------  273 (1205)
T ss_pred             EEEEEe-cCCCccchhhhhcccccCC--CCccccccccchhheeeeEEeecCCCchHHHHhcchhhhcc-----------
Confidence            444454 4899999999999987753  22223333334445666666667778887776666554433           


Q ss_pred             CCCceEEeCCCccccCCCCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCC---CC--ceecCCCCCCCCCC
Q psy15127        338 LPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPG---PH--AVHRMPDSGLFPGP  412 (633)
Q Consensus       338 ~p~p~~~~~~~~~~~g~p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~---~~--~~~~~~~~~~~p~~  412 (633)
                                     +-+...+.+.+....+.+.|+|...+..|.....+.-.+.....   +.  ............+-
T Consensus       274 ---------------~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~  338 (1205)
T KOG0613|consen  274 ---------------HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGL  338 (1205)
T ss_pred             ---------------cCCCccccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccc
Confidence                           11222334455566777888888888888776555444332211   11  11111111222233


Q ss_pred             CCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEE-EEEeeeeceEEEecCCCCCeEEEEEEEEec
Q psy15127        413 PAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVV-AAHRITSTSITVSDLKPDTSYMFIVRAENS  491 (633)
Q Consensus       413 p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~  491 (633)
                      +............+.+.|.......  .....+|...-.... ...|.. .......+.+.+.++.++..|..++.|.|.
T Consensus       339 ~~~~~v~a~d~~~v~m~~~~~~~~~--p~~~~~~~~~~~~~~-~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~  415 (1205)
T KOG0613|consen  339 VRNLSVTARDNTLVEMPTALSGTQK--PDEAQGYHGEEVSSE-SLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNK  415 (1205)
T ss_pred             cccceeccccCcceeecccccCCcC--Cchheeecccccccc-cccccccccccccCcchhhhhcCcccccccccceecc
Confidence            3344555566778888888776543  122444444332221 122221 112234578899999999999999999999


Q ss_pred             cccCCCCCC
Q psy15127        492 HGLGIPSPV  500 (633)
Q Consensus       492 ~G~g~~s~~  500 (633)
                      .|.......
T Consensus       416 ~g~~~~~~~  424 (1205)
T KOG0613|consen  416 GGTEQTIAE  424 (1205)
T ss_pred             CCcccccch
Confidence            998665443

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.45  E-value=0.014  Score=45.46  Aligned_cols=61  Identities=21%  Similarity=0.293  Sum_probs=37.2

Q ss_pred             CceEEEEEEEeeecC--CeeEEEECCEEEEeccCCccceEEEccCc------eEEEcCCCCCCCeEEEEEEEeC
Q psy15127        255 PRVNRLSCFAEGSPL--PSVFWTQEGSQVLMFPGNAYGHLHVTQEG------TLRIQGVQKEDAGFFVCSALSV  320 (633)
Q Consensus       255 g~~~~l~C~~~g~p~--~~v~W~~~g~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~G~Y~C~a~n~  320 (633)
                      ++..+|.|.+.|.-+  ..++|.+||..+..  +..........++      .|.+.   +.+...|+|.+.-.
T Consensus        15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~--~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~   83 (94)
T cd05767          15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTD--GVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW   83 (94)
T ss_pred             CCCeEEEEEEEEEECCcCEEEEEECCeEccC--ceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence            355799999999644  48899999987632  1111112222233      34443   34567999999654

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>PHA03270 envelope glycoprotein C; Provisional

Probab=96.40  E-value=0.33  Score=47.73  Aligned_cols=63  Identities=14%  Similarity=0.167  Sum_probs=46.8

Q ss_pred             eEEEcCCCC--CCeEEEEEEe--------------cCcCCeeeeCCCceEEEcCCeEEEEEEEecc-CC--CeEEEEeCC
Q psy15127         49 VLGARGALS--DDQWKLIAKE--------------ALIKPFPISEPSDATVLSGSVVEFVCRVGGD-PL--PTILWRRDD  109 (633)
Q Consensus        49 ~L~i~~v~~--~G~Y~C~a~~--------------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~-p~--p~i~W~~~~  109 (633)
                      .|.|..++.  +|.|+=...+              ...+|.+...+..  +.+|+...-.|.+... |.  ..+.|++|+
T Consensus       183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~P--vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng  260 (466)
T PHA03270        183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHA--VLEGEPFGATCVAANYYPGDRAAFRWFEGG  260 (466)
T ss_pred             eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence            399999998  9999999655              2334554444333  6789999999999764 32  259999999


Q ss_pred             ccCC
Q psy15127        110 GKMP  113 (633)
Q Consensus       110 ~~i~  113 (633)
                      .++.
T Consensus       261 ~~V~  264 (466)
T PHA03270        261 DEVF  264 (466)
T ss_pred             cccc
Confidence            9885

>TIGR00864 PCC polycystin cation channel protein

Probab=96.37  E-value=4.3  Score=50.44  Aligned_cols=69  Identities=14%  Similarity=0.160  Sum_probs=46.0

Q ss_pred             CCCCeEEEEEE--EeCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCE
Q psy15127        132 PQDEGLYICDV--ENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ  201 (633)
Q Consensus       132 ~~d~G~Y~C~~--~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~  201 (633)
                      ....|.|+-..  .|..|..+....+.|..+...+.+.+....+..+..+.++-....|. ...+.|...+.
T Consensus      1480 Y~~~GtYtVtLTvtN~~Gsst~T~~VtV~~pV~~~tinas~~~vpl~~sV~Fta~~s~Gs-~v~ysWdFGDg 1550 (2740)
T TIGR00864      1480 FNSPGDFNIRLAAANEVGKNEATLNVAVKARVRGLTINASLTNVPLNGSVHFEAHLDAGD-DVRFSWILCDH 1550 (2740)
T ss_pred             cCCCceEEEEEEEECCCCceEEEEEEEEeccccceEEcCCCccccccceEEEEEEccCCC-ceeEEEEeCCC
Confidence            45689998875  57778877788888877634455555555555667788875533443 55899987543

Note: this model has been restricted to the amino half because for technical reasons.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=96.35  E-value=0.015  Score=41.10  Aligned_cols=49  Identities=16%  Similarity=0.379  Sum_probs=37.0

Q ss_pred             CceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEe
Q psy15127        255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  319 (633)
Q Consensus       255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  319 (633)
                      .+.|.|.|.+    ..+|.|++ |..+.           ...+.+|.+-....+-.|.|.|.+.+
T Consensus         6 ~~~V~L~C~~----~tsi~W~k-G~~~~-----------~~~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNG----ATNITWKK-GKEIL-----------EVSNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecC----CCcEEEec-Ccccc-----------cccccEEeccCcccCCCcceEecCcc
Confidence            3678999965    25699999 65442           11255889999999999999999876

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.35  E-value=0.021  Score=44.66  Aligned_cols=61  Identities=21%  Similarity=0.380  Sum_probs=38.2

Q ss_pred             cCCeEEEEEEEecc-CC-CeEEEEeCCccCCCCCe---EEcc-c------ceEEEccCCCCCCeEEEEEEEeCC
Q psy15127         85 SGSVVEFVCRVGGD-PL-PTILWRRDDGKMPTGRA---KILD-D------RSLQIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus        85 ~G~~~~L~C~~~~~-p~-p~i~W~~~~~~i~~~~~---~~~~-~------~~L~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      .++.++|.|.+.+. |. ..|+|+|||.. ..+..   .... +      ..|.|..-.......|+|.|....
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            46679999999885 43 36899999997 33211   1111 2      245554433334678999998653

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.34  E-value=0.019  Score=44.64  Aligned_cols=67  Identities=10%  Similarity=0.153  Sum_probs=46.2

Q ss_pred             ceEEEcCCeEEE-EEEE-eccCCCeEEEEeCCccCCCC------CeEEcccceEEEccCCCCCCeEEEEEEEeCC
Q psy15127         80 DATVLSGSVVEF-VCRV-GGDPLPTILWRRDDGKMPTG------RAKILDDRSLQIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus        80 ~~~~~~G~~~~L-~C~~-~~~p~p~i~W~~~~~~i~~~------~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      ...+.+|+.+.+ .|.+ .|.|.+.|+|+.+.......      .....-.+.|.+...+.+|...++|.+....
T Consensus        10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a   84 (97)
T cd07704          10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA   84 (97)
T ss_pred             eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence            456778899999 9988 47899999999874322111      1111112467777777788899999998664

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.33  E-value=0.013  Score=44.70  Aligned_cols=60  Identities=25%  Similarity=0.400  Sum_probs=41.4

Q ss_pred             cCCeEEEEEEEecc-CCC-eEEEEeCCccCCCCCeE---E-ccc------ceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127         85 SGSVVEFVCRVGGD-PLP-TILWRRDDGKMPTGRAK---I-LDD------RSLQIENVGPQDEGLYICDVENLVG  147 (633)
Q Consensus        85 ~G~~~~L~C~~~~~-p~p-~i~W~~~~~~i~~~~~~---~-~~~------~~L~i~~v~~~d~G~Y~C~~~n~~g  147 (633)
                      .++.++|.|.+.+. |.. .|+|+++|..+..+...   . ..+      +.|.+.   ..+...|+|.|.....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            48899999999874 433 69999999987543211   1 122      345555   6677799999986543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology

Probab=96.32  E-value=0.024  Score=45.67  Aligned_cols=81  Identities=12%  Similarity=0.035  Sum_probs=46.5

Q ss_pred             ecccceEEEEEEEecCCC-----cccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccc
Q psy15127        537 PTASTAVRITWEVSWGSV-----PQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLR  611 (633)
Q Consensus       537 ~~~~~si~v~W~~p~~~~-----p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~  611 (633)
                      .....+|.|.+.+|..+.     .....+.-+ -..| .|.|.+.....             ...........++|.+|.
T Consensus        11 ~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~-~~~Y-~v~~~~~~~~~-------------~~~~~~~~~~~~~l~~L~   75 (106)
T PF09294_consen   11 SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYP-SLSY-NVSYWKNGSNE-------------KKKEIETKNSSVTLSDLK   75 (106)
T ss_dssp             EEETTEEEEEEEESEEEEECSSSEEEHHHHHG-G-EE-EEEEEETTTSC-------------EEEEEESSSEEEEEES--
T ss_pred             EECCCEEEEEEECCCcccccCCCCCcHHHhCC-CeEE-EEEEEeCCCcc-------------ceEEEeecCCEEEEeCCC
Confidence            567899999999761000     000001111 2458 88887776652             011123456778999999


Q ss_pred             cceeEEEEEec--cccccccccC
Q psy15127        612 KFTKYEFFLVP--FFKTVEGARL  632 (633)
Q Consensus       612 ~~t~Y~~~v~a--~n~~g~g~~s  632 (633)
                      |++.|.|+|.|  ....-.|.+|
T Consensus        76 p~t~YCv~V~~~~~~~~~~s~~S   98 (106)
T PF09294_consen   76 PGTNYCVSVQAFSPSQNKNSQPS   98 (106)
T ss_dssp             TTSEEEEEEEEEECSSTEEEEEB
T ss_pred             CCCCEEEEEEEEeccCCCcCCCC
Confidence            99999999999  2233445554

They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....

>KOG1480|consensus

Probab=96.32  E-value=0.0055  Score=63.90  Aligned_cols=77  Identities=22%  Similarity=0.431  Sum_probs=63.3

Q ss_pred             CeeeeCCCceEEEcCCeEEEEEEE-eccCCCeEEEEeCCccCCCC-CeEEcccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         72 PFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTG-RAKILDDRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        72 p~~~~~~~~~~~~~G~~~~L~C~~-~~~p~p~i~W~~~~~~i~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      -.+...|....|..+..+.|.|.. .+.|...++|++++..+... ......++.|.+..++..|.|+|+|+|.|..+.
T Consensus       130 k~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~  208 (909)
T KOG1480|consen  130 KHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAK  208 (909)
T ss_pred             HhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhcc
Confidence            456677777788999999999987 46788889999999887553 344456789999999999999999999988766

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.31  E-value=0.0088  Score=48.87  Aligned_cols=75  Identities=17%  Similarity=0.282  Sum_probs=44.4

Q ss_pred             EcCCeEEEEEEEecc-----CCCeEEEEeCCccCC---CC-CeEE-------------cccceEEEccCCCCCCeEEEEE
Q psy15127         84 LSGSVVEFVCRVGGD-----PLPTILWRRDDGKMP---TG-RAKI-------------LDDRSLQIENVGPQDEGLYICD  141 (633)
Q Consensus        84 ~~G~~~~L~C~~~~~-----p~p~i~W~~~~~~i~---~~-~~~~-------------~~~~~L~i~~v~~~d~G~Y~C~  141 (633)
                      .-.+++.|.|.+...     +...|.|+++|..+-   .. ....             ..+.+|.+...+.- .|+|+|.
T Consensus        25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe  103 (130)
T PF08204_consen   25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE  103 (130)
T ss_dssp             TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred             ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence            347899999999642     234699999988651   11 1110             11245777775444 8999999


Q ss_pred             EEeCCceEEEEEEEEEEe
Q psy15127        142 VENLVGSISLRASLTVHL  159 (633)
Q Consensus       142 ~~n~~g~~s~~~~l~V~~  159 (633)
                      |.......+..+.|....
T Consensus       104 Vt~~~~ege~~i~Lk~~~  121 (130)
T PF08204_consen  104 VTELSREGETTIELKYRV  121 (130)
T ss_dssp             EEETTEEEEEEEEEEE--
T ss_pred             EEecCCCceEEEEEEEEE
Confidence            988777777777776643

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=96.30  E-value=0.02  Score=44.77  Aligned_cols=62  Identities=11%  Similarity=0.153  Sum_probs=38.3

Q ss_pred             EEEcCCeEEEEEEEecc-CC-CeEEEEeCCccCCCCCe---------EEcccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         82 TVLSGSVVEFVCRVGGD-PL-PTILWRRDDGKMPTGRA---------KILDDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        82 ~~~~G~~~~L~C~~~~~-p~-p~i~W~~~~~~i~~~~~---------~~~~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      .+..+..++|.|.+.+. |. ..++|++||..+..+..         .+...+.|.|..-.  ....|+|.|...
T Consensus        12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~   84 (96)
T cd07697          12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHE   84 (96)
T ss_pred             HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEEC
Confidence            34446789999999884 43 36899999988654311         11112345444322  234599999763

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=96.29  E-value=0.011  Score=46.85  Aligned_cols=66  Identities=12%  Similarity=0.191  Sum_probs=41.2

Q ss_pred             CCceEEEEEEEeeecC--CeeEEEECCEEEEeccCCccceEEEccCc------eEEEcCCCCCCCeEEEEEEEeCC
Q psy15127        254 HPRVNRLSCFAEGSPL--PSVFWTQEGSQVLMFPGNAYGHLHVTQEG------TLRIQGVQKEDAGFFVCSALSVA  321 (633)
Q Consensus       254 ~g~~~~l~C~~~g~p~--~~v~W~~~g~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~G~Y~C~a~n~~  321 (633)
                      .++.++|.|.+.|.-+  ..|.|++||..+....  .........++      .|.+..-..++...|+|.+....
T Consensus        16 ~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~--~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~   89 (100)
T cd07699          16 KSGKATLVCLINDFYPGFATVQWKVDGATVSSGV--QTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG   89 (100)
T ss_pred             cCCCcEEEEEEEeEECCCCEEEEEECCEECcccE--eccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence            3567899999998544  4889999999864111  11111112233      35555555556789999997653

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PHA03376 BARF1; Provisional

Probab=96.16  E-value=0.018  Score=49.60  Aligned_cols=64  Identities=22%  Similarity=0.282  Sum_probs=41.9

Q ss_pred             ceEEEcCCCC--CCeEEEEEEe-----------cCcCC-eeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCcc
Q psy15127         48 SVLGARGALS--DDQWKLIAKE-----------ALIKP-FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK  111 (633)
Q Consensus        48 ~~L~i~~v~~--~G~Y~C~a~~-----------v~~~p-~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~  111 (633)
                      -+|.|.+++.  .|+|+|.+..           ...+| .+.........-.-+..++.|...|.|.|.++|.-+...
T Consensus        87 vsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~~  164 (221)
T PHA03376         87 FFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGV  164 (221)
T ss_pred             EEEEEEeeeecCCceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccCC
Confidence            4599999998  9999999987           11121 111111000001135678999988899999999987653

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=96.08  E-value=0.0081  Score=42.15  Aligned_cols=50  Identities=14%  Similarity=0.360  Sum_probs=34.4

Q ss_pred             CCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEe
Q psy15127        254 HPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  319 (633)
Q Consensus       254 ~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  319 (633)
                      .|.+|+|+|...+.   .+.|.+++..+.   +         .+..+.+.+-. ++.|.|+|.+.+
T Consensus         6 sGTtVtlTCP~~~~---~i~W~~n~~~~~---g---------~~~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           6 SGTTVTVTCPLSGD---DIKWKKNDQVSQ---G---------SDEKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             eccEEEEECCCCCC---CceEEeCCccCC---C---------CCceEEeeccC-CCCceEEEEeCC
Confidence            46899999976533   299999985442   1         22245555555 889999999954

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=95.93  E-value=0.043  Score=42.43  Aligned_cols=63  Identities=13%  Similarity=0.162  Sum_probs=40.8

Q ss_pred             EEcCCeEEEEEEEec-cCC--CeEEEEeCCccCCCCCeEE--------cccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         83 VLSGSVVEFVCRVGG-DPL--PTILWRRDDGKMPTGRAKI--------LDDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        83 ~~~G~~~~L~C~~~~-~p~--p~i~W~~~~~~i~~~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      +.+|+.+++.|.+.+ .|.  ..+.|+++...+....+..        .....++|.....+|..+|+|.|.-.
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~   85 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLH   85 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEEe
Confidence            479999999999964 343  4699998777664332211        01235666554444445999999643

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=95.93  E-value=0.043  Score=41.82  Aligned_cols=62  Identities=16%  Similarity=0.257  Sum_probs=39.3

Q ss_pred             CceEEEEEEEeeecCC--eeEEEECCEEEEeccCCccceEEEccCc------eEEEcCCCCCCCeEEEEEEEeCC
Q psy15127        255 PRVNRLSCFAEGSPLP--SVFWTQEGSQVLMFPGNAYGHLHVTQEG------TLRIQGVQKEDAGFFVCSALSVA  321 (633)
Q Consensus       255 g~~~~l~C~~~g~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~G~Y~C~a~n~~  321 (633)
                      ++.++|.|.+.+.-+.  .|.|.++|..+....  .........++      .|.+.   ..+...|+|.+....
T Consensus         8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~--~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~   77 (83)
T PF07654_consen    8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGV--ETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES   77 (83)
T ss_dssp             TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTE--EEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred             CCCEEEEEEEEEEECCCcEEEEEeccceeeeee--eecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence            5789999999986553  799999998763110  00111112233      35555   566679999997654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.92  E-value=0.02  Score=44.86  Aligned_cols=71  Identities=17%  Similarity=0.197  Sum_probs=42.2

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccC---CCeEEEEeCCccCC-------CCCeEEcccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDP---LPTILWRRDDGKMP-------TGRAKILDDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p---~p~i~W~~~~~~i~-------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      ..|..-.+..+..++|.|.+.+.-   ...++|.++|..-.       .....+.-.+.|.|..-.......|+|.|...
T Consensus         9 ~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~   88 (99)
T cd04986           9 QRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHP   88 (99)
T ss_pred             ECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECC
Confidence            344444455788999999998743   23699999987510       00011111234555433334456799999765


Q ss_pred             C
Q psy15127        146 V  146 (633)
Q Consensus       146 ~  146 (633)
                      .
T Consensus        89 ~   89 (99)
T cd04986          89 E   89 (99)
T ss_pred             C
Confidence            4

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.89  E-value=0.021  Score=45.35  Aligned_cols=66  Identities=15%  Similarity=0.179  Sum_probs=39.0

Q ss_pred             CceEEEEEEEeeecCC--eeEEEECCEEEEeccCCccce-------EEEccCceEEEcCCCCCCCeEEEEEEEeC
Q psy15127        255 PRVNRLSCFAEGSPLP--SVFWTQEGSQVLMFPGNAYGH-------LHVTQEGTLRIQGVQKEDAGFFVCSALSV  320 (633)
Q Consensus       255 g~~~~l~C~~~g~p~~--~v~W~~~g~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  320 (633)
                      ++.++|.|.+.|.-+.  .++|.+||..+..........       -.......|.+..-...+...|+|.+.-.
T Consensus        16 ~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~   90 (102)
T cd05768          16 QETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHE   90 (102)
T ss_pred             CCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeC
Confidence            5789999999997554  679999998764211000000       01111224555443444567899998654

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.79  E-value=0.038  Score=43.33  Aligned_cols=36  Identities=17%  Similarity=0.338  Sum_probs=26.7

Q ss_pred             CCCceEEecCCcEEEEEeCCCC-CCC-CeEEEEECCEE
Q psy15127        167 EPKDTRVASGETALLECGPPKG-QPE-PTLHWKKNGQF  202 (633)
Q Consensus       167 ~~~~~~~~~g~~~~l~C~~~~~-~p~-~~i~W~~~~~~  202 (633)
                      +|....+..|+.++|.|.+... +|. ..++|.|+++.
T Consensus         5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~   42 (96)
T cd07696           5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGE   42 (96)
T ss_pred             CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeE
Confidence            4444556778999999997665 455 49999998753

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>KOG4597|consensus

Probab=95.58  E-value=0.025  Score=55.70  Aligned_cols=89  Identities=15%  Similarity=0.103  Sum_probs=67.3

Q ss_pred             CeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC---CccCCC------CCeEEcccceEEEccCCCCCCeEEEEEE
Q psy15127         72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD---DGKMPT------GRAKILDDRSLQIENVGPQDEGLYICDV  142 (633)
Q Consensus        72 p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~---~~~i~~------~~~~~~~~~~L~i~~v~~~d~G~Y~C~~  142 (633)
                      +.+..-|....+..|++..++|-+.|.+.+.|.|.+.   +..+..      ++........|.|-+....|+|.|+|.+
T Consensus       197 c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~  276 (560)
T KOG4597|consen  197 CALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSA  276 (560)
T ss_pred             cccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecc
Confidence            4455667778889999999999999999999999873   332211      1112223357999999999999999999


Q ss_pred             EeCCceEEEEEEEEEEee
Q psy15127        143 ENLVGSISLRASLTVHLL  160 (633)
Q Consensus       143 ~n~~g~~s~~~~l~V~~~  160 (633)
                      .+..|...+.+.+.+...
T Consensus       277 rcg~g~~~rdv~c~s~~g  294 (560)
T KOG4597|consen  277 RCGAGFLRRDVPCSSVKG  294 (560)
T ss_pred             ccccceeeccceeeeecc
Confidence            999998877777766543

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=95.58  E-value=0.03  Score=43.81  Aligned_cols=67  Identities=16%  Similarity=0.262  Sum_probs=40.8

Q ss_pred             ceEEEEEEE-eeecCCeeEEEECC--EEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127        256 RVNRLSCFA-EGSPLPSVFWTQEG--SQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       256 ~~~~l~C~~-~g~p~~~v~W~~~g--~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                      ....+.|.+ .|+|.+.|+|+++.  ...........+.  ....+.|.+.....+|.-.|+|.+.+..-..
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~--~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~   85 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGT--VTVTSEYRLVPSREANGKELTCVVSHPTLQE   85 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCC--EEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence            567889999 68899999999972  1110000000000  1112356676666677789999998876443

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>PHA03271 envelope glycoprotein C; Provisional

Probab=95.57  E-value=2.2  Score=41.96  Aligned_cols=146  Identities=16%  Similarity=0.201  Sum_probs=77.9

Q ss_pred             eEEEcCCCC--CCeEEEEEEe---------------cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCC---eEEEEeC
Q psy15127         49 VLGARGALS--DDQWKLIAKE---------------ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLP---TILWRRD  108 (633)
Q Consensus        49 ~L~i~~v~~--~G~Y~C~a~~---------------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p---~i~W~~~  108 (633)
                      .|.|.++.-  +|.|+-...+               .+.+|.+...+.  .+.+|+...-.|.+...=+|   .+.|++|
T Consensus       208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~n  285 (490)
T PHA03271        208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWRQN  285 (490)
T ss_pred             eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            488999988  9977655555               122333333332  26789999999999764222   5999999


Q ss_pred             CccCCCCC--eEE---cc-------cceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEeeccccccCCCce-EEec
Q psy15127        109 DGKMPTGR--AKI---LD-------DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDT-RVAS  175 (633)
Q Consensus       109 ~~~i~~~~--~~~---~~-------~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~-~~~~  175 (633)
                      |.++....  ...   ..       -++|.+.+...+.--..+|.+.=.........  .-... |.+...|.-. ....
T Consensus       286 G~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~r--nAaat-P~VY~~P~ISv~Fed  362 (490)
T PHA03271        286 GNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTT--NATAI-PTVYHHPRISLAFKD  362 (490)
T ss_pred             CccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeee--ecccC-CccccCCeEEEEEeC
Confidence            98764211  111   11       12444544333334489999863222211111  22222 3333333322 3334


Q ss_pred             CCcE-EEEEeCCCCCCCCeEEEEECCEEe
Q psy15127        176 GETA-LLECGPPKGQPEPTLHWKKNGQFI  203 (633)
Q Consensus       176 g~~~-~l~C~~~~~~p~~~i~W~~~~~~~  203 (633)
                      |+-+ +-.|. ..   ...+.|+.++...
T Consensus       363 G~AVCtA~CV-P~---gV~lrWlVgD~p~  387 (490)
T PHA03271        363 GYAICTIECV-PS---GITVRWLVHDEPQ  387 (490)
T ss_pred             CEEEEecccc-CC---CcEEEEEecCCCC
Confidence            4432 33555 22   4599998876544

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=95.53  E-value=0.07  Score=43.74  Aligned_cols=78  Identities=14%  Similarity=0.325  Sum_probs=47.2

Q ss_pred             CceEEEEEEEeeec-----CCeeEEEECCEEEEeccCCccceE-------EE----ccCceEEEcCCCCCCCeEEEEEEE
Q psy15127        255 PRVNRLSCFAEGSP-----LPSVFWTQEGSQVLMFPGNAYGHL-------HV----TQEGTLRIQGVQKEDAGFFVCSAL  318 (633)
Q Consensus       255 g~~~~l~C~~~g~p-----~~~v~W~~~g~~~~~~~~~~~~~~-------~~----~~~~~l~i~~~~~~d~G~Y~C~a~  318 (633)
                      .+++.|.|.+...+     ...+.|.++|..+....+......       .+    .++.+|.+.....- .|.|+|++.
T Consensus        27 N~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeVt  105 (130)
T PF08204_consen   27 NDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEVT  105 (130)
T ss_dssp             -SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEEE
T ss_pred             CCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEEE
Confidence            48899999996522     246899999998765544322111       00    12224666653333 699999999


Q ss_pred             eCCceeEEEEEEEEE
Q psy15127        319 SVAGSTTVRAFLQVR  333 (633)
Q Consensus       319 n~~g~~~~~~~l~v~  333 (633)
                      ......+..+.|...
T Consensus       106 ~~~~ege~~i~Lk~~  120 (130)
T PF08204_consen  106 ELSREGETTIELKYR  120 (130)
T ss_dssp             ETTEEEEEEEEEEE-
T ss_pred             ecCCCceEEEEEEEE
Confidence            988888888888775

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>KOG4802|consensus

Probab=95.53  E-value=0.33  Score=47.20  Aligned_cols=128  Identities=16%  Similarity=0.156  Sum_probs=81.7

Q ss_pred             CceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeC---CeEEEEeCCC
Q psy15127        357 LRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTR---GSVTLGWGEP  433 (633)
Q Consensus       357 ~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~---~~i~l~W~~~  433 (633)
                      ..+.+..+.+..-+.|+..|.|..|....+         .+....+.......|.+|..+++..+..   -...|-|.|+
T Consensus       209 ~~~~~t~~rPgRwyefrvaavn~~G~rGFs---------~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~  279 (516)
T KOG4802|consen  209 NTYIFTDMRPGRWYEFRVAAVNAYGFRGFS---------EPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPS  279 (516)
T ss_pred             ceeeeeecCcceeEEEEEeeeecccccccC---------CCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCC
Confidence            355677888888999999999999854211         1111122222223456677777665543   2467888888


Q ss_pred             CCCCCCCcceeEEEEEEEEecCCCC-e--EEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCC
Q psy15127        434 EPRGGGVAPVIGYTVEYFSSDLQTG-W--VVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIP  497 (633)
Q Consensus       434 ~~~~~~~~~i~~Y~v~~~~~~~~~~-~--~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~  497 (633)
                      ..+    .|+..|.|.|..--.+.. .  ...........+.|.+|.|+..|.+.|.|+.-.|.+..
T Consensus       280 ~sd----lPv~~Yki~Ws~~v~s~k~~m~tks~~~k~thq~si~~L~Pns~Y~VevqAi~y~g~~rL  342 (516)
T KOG4802|consen  280 KSD----LPVEKYKITWSLYVNSAKASMITKSSYVKDTHQFSIKELLPNSSYYVEVQAISYLGSRRL  342 (516)
T ss_pred             CCC----CcceeeEEEeehhhhhhhhhcccccceeeccchhhhhhcCCCCeEEEEEEEEEeccCccc
Confidence            754    699999998864211100 0  00001112335559999999999999999999998866

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=95.52  E-value=0.038  Score=43.08  Aligned_cols=70  Identities=14%  Similarity=0.174  Sum_probs=41.4

Q ss_pred             ceEEEEEEEe-eecCCeeEEEECCEEEE--eccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEE
Q psy15127        256 RVNRLSCFAE-GSPLPSVFWTQEGSQVL--MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  327 (633)
Q Consensus       256 ~~~~l~C~~~-g~p~~~v~W~~~g~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  327 (633)
                      ....+.|.+. |.|.+.|+|+++.....  .......+.  ....+.|.+.....+|...|+|.+.+..-.....
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt--~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~   88 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGT--VTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQL   88 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCC--EEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeE
Confidence            4678999885 78889999999732110  000000011  1112356666656677789999999876444333

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi

Probab=95.48  E-value=0.13  Score=48.88  Aligned_cols=135  Identities=16%  Similarity=0.112  Sum_probs=69.6

Q ss_pred             eceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCceeecCC---CCCCCcchHHHHHHHhCCceEEeeeeee--cccce
Q psy15127        468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGL---NSLVPQHLLDEARARLGTKVVNLRELIP--TASTA  542 (633)
Q Consensus       468 ~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s  542 (633)
                      -..+.+.++.|+..|.+++.+.|+.... .+.-+....|...   -|..|.+.           .|   +...  -+=++
T Consensus       127 ~~~f~l~~~~~g~~Yliri~~~~~~e~~-~~~kV~aast~~~~~~~P~LP~d~-----------~I---k~f~~lrtC~S  191 (300)
T PF10179_consen  127 LRHFRLSGVKPGERYLIRIQISNSDEGP-STFKVQAASTNPSKQPYPQLPDDT-----------SI---KEFNKLRTCNS  191 (300)
T ss_pred             eEEEEECCCCCCCeEEEEEEccCCCCCc-eEEEEEEecCCcccCCCCCCCCCC-----------ce---eEEcCCcccce
Confidence            4678999999999999999887754322 1111100111111   12222221           01   2233  23489


Q ss_pred             EEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcc-----------c--ce--eeeeeccce-eEee----cCCcc
Q psy15127        543 VRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTAS-----------T--AV--RITWEKYNM-ATVM----NAATT  602 (633)
Q Consensus       543 i~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~-----------~--~~--~~~w~~~~~-~~~~----~~~~~  602 (633)
                      ++|.|.+          .+... ..| =|+-++......           .  ..  ..+|..-.. ....    .....
T Consensus       192 vTIAW~~----------s~d~~-~kY-Cvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v  259 (300)
T PF10179_consen  192 VTIAWLG----------SPDRS-IKY-CVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAV  259 (300)
T ss_pred             EEEEEec----------CCCCC-ceE-EEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCcccccccccc
Confidence            9999993          22222 567 555544444311           0  00  112221100 0000    01123


Q ss_pred             ceEEeeccccceeEEEEEecccccccc
Q psy15127        603 TSYTVTHLRKFTKYEFFLVPFFKTVEG  629 (633)
Q Consensus       603 ~~~~i~~L~~~t~Y~~~v~a~n~~g~g  629 (633)
                      +..+|.||+||+.|.|.|.|.=..|..
T Consensus       260 ~tetI~~L~PG~~Yl~dV~~~~~~G~s  286 (300)
T PF10179_consen  260 TTETIKGLKPGTTYLFDVYVNGPSGQS  286 (300)
T ss_pred             ceeecccCCCCcEEEEEEEEecCCCce
Confidence            556899999999999999988655543

The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=95.45  E-value=0.096  Score=40.94  Aligned_cols=28  Identities=18%  Similarity=0.247  Sum_probs=22.4

Q ss_pred             CceEEEEEEEeeecC--CeeEEEECCEEEE
Q psy15127        255 PRVNRLSCFAEGSPL--PSVFWTQEGSQVL  282 (633)
Q Consensus       255 g~~~~l~C~~~g~p~--~~v~W~~~g~~~~  282 (633)
                      ++.++|.|.+.|.-+  ..++|.+||..+.
T Consensus        16 ~~~~tL~C~a~gFyP~~I~v~W~kng~~~~   45 (96)
T cd07697          16 QGQGIYLCLLENFFPDVIQVHWREGNSPSI   45 (96)
T ss_pred             CCCEEEEEEEEEEeCCCeEEEEEECCEECc
Confidence            467899999999644  3789999998753

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>PHA02633 hypothetical protein; Provisional

Probab=95.28  E-value=0.087  Score=36.33  Aligned_cols=39  Identities=15%  Similarity=0.212  Sum_probs=33.4

Q ss_pred             cCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEe
Q psy15127        296 QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE  334 (633)
Q Consensus       296 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  334 (633)
                      ....|.|-++...|+|.|.|...|..-....++.|.|..
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~   54 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL   54 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence            344799999999999999999999888888888888864

>PHA03042 CD47-like protein; Provisional

Probab=95.28  E-value=0.056  Score=49.56  Aligned_cols=72  Identities=18%  Similarity=0.262  Sum_probs=46.9

Q ss_pred             EcCCeEEEEEEEecc-----CCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy15127         84 LSGSVVEFVCRVGGD-----PLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH  158 (633)
Q Consensus        84 ~~G~~~~L~C~~~~~-----p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~  158 (633)
                      .-.+++.+.|.+...     ....+.|++++..+-.....  ...+|.+ +-..+-.|+|+|.|.+........++|.-.
T Consensus        29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t--n~aSL~~-~f~~~l~GNYTCEv~~l~n~gk~~IeLk~~  105 (286)
T PHA03042         29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT--NTSSLKF-NFSKNLSGNYTCEAINKFNKIKNTIELQYV  105 (286)
T ss_pred             ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC--cceEEEE-eccccCCCceeEEEeecccCccEEEEEEEE
Confidence            447899999998642     23469999999876332222  2246766 344555899999998765554555554444

>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R

Probab=95.24  E-value=0.14  Score=41.17  Aligned_cols=79  Identities=27%  Similarity=0.353  Sum_probs=56.6

Q ss_pred             CCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEE--EEeeeeceEEEecCC--CCCeEEEEE
Q psy15127        411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVA--AHRITSTSITVSDLK--PDTSYMFIV  486 (633)
Q Consensus       411 ~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~--~~~~~~~~~~i~~L~--p~~~Y~~~v  486 (633)
                      .+|.++.+... .-...|.|+++..    ......|.|+|+. .....|...  ...+..+...|++..  +...|.+||
T Consensus        23 p~P~nv~~~s~-nf~~iL~W~~~~~----~~~~~~ytVq~~~-~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV   96 (107)
T PF01108_consen   23 PAPQNVTVDSV-NFKHILRWDPGPG----SPPNVTYTVQYKK-YGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARV   96 (107)
T ss_dssp             SSCEEEEEEEE-TTEEEEEEEESTT----SSSTEEEEEEEEE-SSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEE
T ss_pred             CCCCeeEEEEE-CCceEEEeCCCCC----CCCCeEEEEEEEe-cCCcceeeccceecccccceeCcchhhcCcCCEEEEE
Confidence            34555555444 4568899999653    3467889999993 345688877  667777888887644  789999999


Q ss_pred             EEEeccccC
Q psy15127        487 RAENSHGLG  495 (633)
Q Consensus       487 ~a~n~~G~g  495 (633)
                      +|.-+...+
T Consensus        97 ~A~~~~~~S  105 (107)
T PF01108_consen   97 RAEVGNQTS  105 (107)
T ss_dssp             EEEETTEEE
T ss_pred             EEEeCCccC
Confidence            998766544

...

>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R

Probab=95.20  E-value=0.13  Score=41.30  Aligned_cols=75  Identities=9%  Similarity=0.124  Sum_probs=51.0

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeecc-ceeEeecCCccceEEeeccc-
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKY-NMATVMNAATTTSYTVTHLR-  611 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~i~~L~-  611 (633)
                      ++...+ -...|.|+++         .....-..| .++|+....+       .|+.. +...+.    .+.+.|++.. 
T Consensus        29 ~~~s~n-f~~iL~W~~~---------~~~~~~~~y-tVq~~~~~~~-------~W~~v~~C~~i~----~~~Cdlt~~~~   86 (107)
T PF01108_consen   29 TVDSVN-FKHILRWDPG---------PGSPPNVTY-TVQYKKYGSS-------SWKDVPGCQNIT----ETSCDLTDETS   86 (107)
T ss_dssp             EEEEET-TEEEEEEEES---------TTSSSTEEE-EEEEEESSTS-------CEEEECCEEEES----SSEEECTTCCT
T ss_pred             EEEEEC-CceEEEeCCC---------CCCCCCeEE-EEEEEecCCc-------ceeeccceeccc----ccceeCcchhh
Confidence            455554 4588999953         334466788 9999954444       38765 343333    6888887743 


Q ss_pred             -cceeEEEEEeccccccccc
Q psy15127        612 -KFTKYEFFLVPFFKTVEGA  630 (633)
Q Consensus       612 -~~t~Y~~~v~a~n~~g~g~  630 (633)
                       +...|.+||+|.-....|+
T Consensus        87 ~~~~~Y~~rV~A~~~~~~S~  106 (107)
T PF01108_consen   87 DPSESYYARVRAEVGNQTSD  106 (107)
T ss_dssp             TTTSEEEEEEEEEETTEEEE
T ss_pred             cCcCCEEEEEEEEeCCccCC
Confidence             7889999999987665543

...

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.07  E-value=0.057  Score=42.27  Aligned_cols=35  Identities=26%  Similarity=0.462  Sum_probs=26.2

Q ss_pred             CCceEEecCCcEEEEEeCCCCC-CC-CeEEEEECCEE
Q psy15127        168 PKDTRVASGETALLECGPPKGQ-PE-PTLHWKKNGQF  202 (633)
Q Consensus       168 ~~~~~~~~g~~~~l~C~~~~~~-p~-~~i~W~~~~~~  202 (633)
                      |....+..++.++|.|.+..-+ |. ..+.|.++|..
T Consensus        11 Ps~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~   47 (99)
T cd04986          11 PALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK   47 (99)
T ss_pred             cChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence            3334455788999999976656 64 49999999876

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02982 hypothetical protein; Provisional

Probab=95.06  E-value=0.098  Score=45.77  Aligned_cols=115  Identities=15%  Similarity=0.283  Sum_probs=67.3

Q ss_pred             ceEEEcCCeEEEEEEEe-ccCCCeEEEEeCCccC-C----------------CCC--eE----EcccceEEEccCCCCCC
Q psy15127         80 DATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKM-P----------------TGR--AK----ILDDRSLQIENVGPQDE  135 (633)
Q Consensus        80 ~~~~~~G~~~~L~C~~~-~~p~p~i~W~~~~~~i-~----------------~~~--~~----~~~~~~L~i~~v~~~d~  135 (633)
                      ++.+..|+.+.|.|... +..-....|+++.... .                ...  ..    ....++|+|.+++.+..
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~  112 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL  112 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence            56678899999999863 2233457999865322 1                000  00    11246899999999999


Q ss_pred             eEEEEEEEeCCceEEE-EEEEEEEeeccccccCCCceEEecC-CcEEEEEeCCCCCCCCeEEEEECCEE
Q psy15127        136 GLYICDVENLVGSISL-RASLTVHLLRDDFRAEPKDTRVASG-ETALLECGPPKGQPEPTLHWKKNGQF  202 (633)
Q Consensus       136 G~Y~C~~~n~~g~~s~-~~~l~V~~~~p~~~~~~~~~~~~~g-~~~~l~C~~~~~~p~~~i~W~~~~~~  202 (633)
                      |-|+|.+....+..+. .-=|.|+.....+       ...++ ....+.|-+.+ ...+-..|..+|..
T Consensus       113 GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~-------~W~e~nNeT~V~CyVgS-~~~dvp~W~V~GVv  173 (251)
T PHA02982        113 GCFTCEAKDAEGKEETCEKCLEIQKEDILY-------VVEEHNNETIITCFVGS-KHGDVPRFIVAGIV  173 (251)
T ss_pred             CceEEEEecCCCchheeheeeeEecceEEE-------EEEecCCeEEEEEEEEe-ccCCCccEEEeeEE
Confidence            9999999876655322 3333342110111       12223 34567898533 33332389887764

>KOG4367|consensus

Probab=95.03  E-value=0.025  Score=54.69  Aligned_cols=81  Identities=26%  Similarity=0.274  Sum_probs=62.0

Q ss_pred             eeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCC
Q psy15127        421 TTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPV  500 (633)
Q Consensus       421 ~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~  500 (633)
                      ....+++++|+.|...   +.+..+|.++....+. +.... .-....+..+|.+|.-++.|.-||.|.|..|.+++|..
T Consensus       450 t~nns~t~~wkqp~~~---~~~~dg~~leld~g~~-g~fre-vy~g~etmctvdglhfns~y~arvka~n~tg~s~ys~t  524 (699)
T KOG4367|consen  450 THNNSATLSWKQPPLS---TVPADGYILELDDGNG-GQFRE-VYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKT  524 (699)
T ss_pred             ccCCceEEEeecCCCC---CCCCcceEEEeecCCC-CceeE-EEecCceeEEecceecchhHHHHHHHhhccCCCcccce
Confidence            3567899999966644   4788999999887643 33332 23335788999999999999999999999999999876


Q ss_pred             CCceeec
Q psy15127        501 SPITRTL  507 (633)
Q Consensus       501 ~~~~~t~  507 (633)
                      . ..+|.
T Consensus       525 l-~lqts  530 (699)
T KOG4367|consen  525 L-VLQTS  530 (699)
T ss_pred             e-Eeeec
Confidence            6 34443

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=94.94  E-value=0.12  Score=42.01  Aligned_cols=70  Identities=21%  Similarity=0.287  Sum_probs=41.1

Q ss_pred             CCceEEEEEEEeeecCC--eeEEEECCEEEEeccCCccceE-----EEccCceEEEcCCCCCC-CeEEEEEEEeCCce
Q psy15127        254 HPRVNRLSCFAEGSPLP--SVFWTQEGSQVLMFPGNAYGHL-----HVTQEGTLRIQGVQKED-AGFFVCSALSVAGS  323 (633)
Q Consensus       254 ~g~~~~l~C~~~g~p~~--~v~W~~~g~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~  323 (633)
                      .++.++|.|.+.|.-+.  .|.|.+||..+...........     .....+.|.|..-...+ ...|+|.+.-....
T Consensus        17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~   94 (115)
T cd05769          17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT   94 (115)
T ss_pred             cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence            34678999999996443  8899999987642110000000     11112246666544433 57999999765433

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=94.86  E-value=0.071  Score=41.49  Aligned_cols=71  Identities=18%  Similarity=0.221  Sum_probs=43.8

Q ss_pred             eEEecCCceEEE-EEEE-eeecCCeeEEEECCEEEEe--ccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCC
Q psy15127        249 LLIWNHPRVNRL-SCFA-EGSPLPSVFWTQEGSQVLM--FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA  321 (633)
Q Consensus       249 ~~~~~~g~~~~l-~C~~-~g~p~~~v~W~~~g~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  321 (633)
                      ...+.+|+.+.+ .|.+ .|.|.++|.|+.+......  ......+.  ..-.+.|.+.....+|.-.++|.+....
T Consensus        10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT--~TV~S~~~l~p~r~d~G~~vtC~V~H~a   84 (97)
T cd07704          10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGT--TTVTSEYIWVPSRHANGHPLTCVVSHPA   84 (97)
T ss_pred             eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCC--EEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence            345667788888 9987 6788899999987432110  00011111  1122356666666677889999997764

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>KOG4597|consensus

Probab=94.54  E-value=0.046  Score=53.93  Aligned_cols=85  Identities=22%  Similarity=0.188  Sum_probs=66.6

Q ss_pred             eEEecCCceEEEEEEEeeecCCeeEEEE---CCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeE
Q psy15127        249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQ---EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT  325 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~---~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  325 (633)
                      ...+..+++.+++|.+.|.+.+.|+|.+   |+..+.+.+.....+..+.....|.|-+....|+|.|+|.+.+..|-..
T Consensus       205 ~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~  284 (560)
T KOG4597|consen  205 EWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLR  284 (560)
T ss_pred             hhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceee
Confidence            3445677899999999999999999975   5555554444444455555566899999999999999999999999888


Q ss_pred             EEEEEEEE
Q psy15127        326 VRAFLQVR  333 (633)
Q Consensus       326 ~~~~l~v~  333 (633)
                      +.+.+.+.
T Consensus       285 rdv~c~s~  292 (560)
T KOG4597|consen  285 RDVPCSSV  292 (560)
T ss_pred             ccceeeee
Confidence            88777665

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=94.53  E-value=0.15  Score=39.82  Aligned_cols=64  Identities=16%  Similarity=0.281  Sum_probs=37.4

Q ss_pred             CceEEEEEEEeeecC--CeeEEEECCEEEEeccCCccceEEEccCc------eEEEcCCCCCCCeEEEEEEEeCC
Q psy15127        255 PRVNRLSCFAEGSPL--PSVFWTQEGSQVLMFPGNAYGHLHVTQEG------TLRIQGVQKEDAGFFVCSALSVA  321 (633)
Q Consensus       255 g~~~~l~C~~~g~p~--~~v~W~~~g~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~G~Y~C~a~n~~  321 (633)
                      .+.++|.|.+.|.-+  ..|+|.+||.. .. ........ ...++      .|.+..-.......|+|++....
T Consensus        16 ~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~-~~~~~~~~-~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          16 SDSVTLGCLATGFLPEPVTFTWNSGSNS-TS-GVKTYPAV-LQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCcEEEEEEEeeEECCCcEEEEeECCEE-CC-CcEECCCE-eCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            367899999999655  48899999986 21 10011111 11122      34444433333568999997653

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=94.42  E-value=0.37  Score=38.61  Aligned_cols=19  Identities=11%  Similarity=0.538  Sum_probs=17.7

Q ss_pred             eEEEcCCCCCCCeEEEEEE
Q psy15127        299 TLRIQGVQKEDAGFFVCSA  317 (633)
Q Consensus       299 ~l~i~~~~~~d~G~Y~C~a  317 (633)
                      .|.+.+++.+|++.|.|..
T Consensus        75 ~L~l~~L~a~DTa~Y~Ca~   93 (115)
T cd05721          75 NFTLQNLRANQTDIYFCKI   93 (115)
T ss_pred             EEEEcCCCHHHCeEEEEEe
Confidence            7999999999999999975

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PHA03273 envelope glycoprotein C; Provisional

Probab=94.31  E-value=4.2  Score=40.83  Aligned_cols=92  Identities=15%  Similarity=0.164  Sum_probs=59.3

Q ss_pred             EEEcCCCC--CCeEEEEEEe--------------cCcCCeeeeCCCceEEEcCCeEEEEEEEecc-CC--CeEEEEeCCc
Q psy15127         50 LGARGALS--DDQWKLIAKE--------------ALIKPFPISEPSDATVLSGSVVEFVCRVGGD-PL--PTILWRRDDG  110 (633)
Q Consensus        50 L~i~~v~~--~G~Y~C~a~~--------------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~-p~--p~i~W~~~~~  110 (633)
                      |+|..++.  +|.|+=...+              ...+|.+...+..  +.+|+...-.|.+... |.  ..+.|++||.
T Consensus       200 LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~P--vL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~  277 (486)
T PHA03273        200 LTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHP--SLKGENYRAVCVVASYFPHSSVKLRWYKNAK  277 (486)
T ss_pred             eEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCCe
Confidence            99999998  9999866433              2344555444433  6799999999999764 32  2599999999


Q ss_pred             cCCC-CC----eEEccc------ceEEEccCCC-CCCeEEEEEEE
Q psy15127        111 KMPT-GR----AKILDD------RSLQIENVGP-QDEGLYICDVE  143 (633)
Q Consensus       111 ~i~~-~~----~~~~~~------~~L~i~~v~~-~d~G~Y~C~~~  143 (633)
                      ++.. ..    .....+      ++|++..... +.-=..+|.+.
T Consensus       278 ~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~  322 (486)
T PHA03273        278 EVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIE  322 (486)
T ss_pred             eccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEE
Confidence            8862 11    111111      3455544332 33458899986

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=94.16  E-value=0.33  Score=37.25  Aligned_cols=66  Identities=24%  Similarity=0.578  Sum_probs=47.9

Q ss_pred             CCCceEEEcCCeEEEEEEEecc-----CCCeEEEEeCCccCCCCCeEEcccc--eEEEccCCCCCCeEEEEEE
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGD-----PLPTILWRRDDGKMPTGRAKILDDR--SLQIENVGPQDEGLYICDV  142 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~-----p~p~i~W~~~~~~i~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~~  142 (633)
                      .|+...+..|..++..|.....     ....|.|+.++..++..++....++  .++|.+.....+-.|-|..
T Consensus         9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen    9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred             ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence            4566678999999999998522     3457999999999998887777664  5777777766667777774

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=93.95  E-value=0.096  Score=47.96  Aligned_cols=47  Identities=26%  Similarity=0.454  Sum_probs=36.7

Q ss_pred             CCCeEEEEeCCcc-CCCC-CeEEcccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         99 PLPTILWRRDDGK-MPTG-RAKILDDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        99 p~p~i~W~~~~~~-i~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      ..|.++|...++. +... +..+.+.+.|.+.+...+++|.|+|..+-.
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk   59 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYK   59 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence            4678999996554 4443 445566789999999999999999998644

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology

Probab=93.78  E-value=0.18  Score=40.53  Aligned_cols=68  Identities=29%  Similarity=0.438  Sum_probs=43.8

Q ss_pred             EeeCCeEEEEeCCCCCC---CCCC------cceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEE
Q psy15127        420 NTTRGSVTLGWGEPEPR---GGGV------APVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAE  489 (633)
Q Consensus       420 ~~~~~~i~l~W~~~~~~---~~~~------~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~  489 (633)
                      ......|.|.+.+|...   ...+      .....|.|.|+..+..  ............++|.+|.|++.|.++|+|.
T Consensus        11 ~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~--~~~~~~~~~~~~~~l~~L~p~t~YCv~V~~~   87 (106)
T PF09294_consen   11 SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSN--EKKKEIETKNSSVTLSDLKPGTNYCVSVQAF   87 (106)
T ss_dssp             EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTS--CEEEEEESSSEEEEEES--TTSEEEEEEEEE
T ss_pred             EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCc--cceEEEeecCCEEEEeCCCCCCCEEEEEEEE
Confidence            66788999999988611   0000      1135799999987654  1222233345667999999999999999993

They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=93.26  E-value=0.65  Score=45.09  Aligned_cols=119  Identities=17%  Similarity=0.228  Sum_probs=73.2

Q ss_pred             CceEEEcCCeEEEEEEEe--ccC-CCeEEEEeCCccCC------------------CCCeEE---------cccceEEEc
Q psy15127         79 SDATVLSGSVVEFVCRVG--GDP-LPTILWRRDDGKMP------------------TGRAKI---------LDDRSLQIE  128 (633)
Q Consensus        79 ~~~~~~~G~~~~L~C~~~--~~p-~p~i~W~~~~~~i~------------------~~~~~~---------~~~~~L~i~  128 (633)
                      ....+..|..+.|.|.++  |+. -..+.|+--|-++.                  +..+.+         +..++|+|.
T Consensus       272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk  351 (500)
T PHA02914        272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK  351 (500)
T ss_pred             ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence            345677799999999986  333 33589987665442                  111111         113689999


Q ss_pred             cCCCCCCeEEEEEEEeCCceEEEEEEEEEEeeccccccCCCceEEecCC-cEEEEEeCCCC-CCCCeEEEEECCEEec
Q psy15127        129 NVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGE-TALLECGPPKG-QPEPTLHWKKNGQFID  204 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~-~~~l~C~~~~~-~p~~~i~W~~~~~~~~  204 (633)
                      +++.+.+|-|.|.|..+.-+....-=|.|... ..+      ....+|. ...+.|-+.+. ..++.+.|..+|....
T Consensus       352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~-V~f------~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~  422 (500)
T PHA02914        352 KAHINNAGCYEAQAFMGKFKEECRHCFKVADH-VFF------KWNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFG  422 (500)
T ss_pred             eEEEEcCCceEEEEecCcchhhhhhheEeccE-EEE------EEEeccCceEEEEEEEEecccCCceeEEEEccEEec
Confidence            99999999999999865333333322333321 111      1223433 44568986555 3455799999887654

>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]

Probab=91.59  E-value=7.3  Score=37.53  Aligned_cols=161  Identities=14%  Similarity=-0.016  Sum_probs=87.0

Q ss_pred             EEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEE-eccccC
Q psy15127        417 VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAE-NSHGLG  495 (633)
Q Consensus       417 ~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~-n~~G~g  495 (633)
                      +......+.+.|+|..+...       ..|.++-...+. ......... ..+.+.-.--.-+..|.+.+.++ |..+.+
T Consensus       172 ~~~~d~~~~i~ls~dg~~~~-------~yy~IY~~~~g~-e~~~~ia~t-~~n~y~d~~eglga~~~y~VTtVd~~~~es  242 (343)
T COG3401         172 RVSFDLGNNIELSEDGSEAE-------DYYRIYASDSGN-EEYGFIAQT-TENSYYDVKEGLGAVEYYKVTTVDNTGFES  242 (343)
T ss_pred             eeecCCCCcceeeccCcccc-------ceEEEeccCCcc-ccccceeec-cccchhhhhhccCceeEEEEEEEcCCccee
Confidence            34455678899999987632       267776554432 222222222 22333222222366777777777 466666


Q ss_pred             CCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEE
Q psy15127        496 IPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRE  575 (633)
Q Consensus       496 ~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~  575 (633)
                      ..+.....-.+.+.++.+....                  .......+.|.|+.         .+....+..+ .-++..
T Consensus       243 ~lp~~~t~~~~~g~~e~pt~~g------------------~t~~~s~i~V~~E~---------~~~~~av~yt-vyr~~~  294 (343)
T COG3401         243 DLPNEPTVGETGGRYEVPTIPG------------------ETTEASFIGVAAEQ---------NQLRQAVTYT-VYRVED  294 (343)
T ss_pred             ccCCccccccccCCcccccCCC------------------ceeeeeeeeEEecc---------cccceeeEEe-eeeccC
Confidence            6665553444544432222111                  11124455788882         1122233333 223322


Q ss_pred             cCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccc
Q psy15127        576 LIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGA  630 (633)
Q Consensus       576 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~  630 (633)
                        ..              .+.......+.+....+..+..|.+.|.|.+.+|-..
T Consensus       295 --g~--------------~~~~f~it~~d~~d~~~ltg~~~~y~v~~v~~~gls~  333 (343)
T COG3401         295 --GT--------------PTKFFTITETDGQDNDMLTGVEYRYEVVAVDKAGLSS  333 (343)
T ss_pred             --CC--------------cceeeeeeeccccchhhccccceeEEEEEeccccccc
Confidence              11              1233344578889999999999999999999888654

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=91.51  E-value=0.27  Score=45.11  Aligned_cols=50  Identities=20%  Similarity=0.408  Sum_probs=39.1

Q ss_pred             cCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCC
Q psy15127        268 PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA  321 (633)
Q Consensus       268 p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  321 (633)
                      ..|.+.|..++..+.    ....++.+...|.|.+.+..+.++|.|+|..+-..
T Consensus        11 iDP~y~W~GP~g~~l----~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPL----SGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCccc----CCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence            357899997654432    24467788899999999999999999999986543

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=91.42  E-value=3.1  Score=31.13  Aligned_cols=52  Identities=13%  Similarity=0.275  Sum_probs=33.1

Q ss_pred             CCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEE-EeCCceEEEEEEEEE
Q psy15127        100 LPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDV-ENLVGSISLRASLTV  157 (633)
Q Consensus       100 ~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~-~n~~g~~s~~~~l~V  157 (633)
                      .+.+.|+-.+...      ......+........|+|.++|.| .+..-.......|.|
T Consensus        26 ~~~~~l~~~~~k~------~~~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   26 KPSLFLENPGKKS------LETKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             CEEEEEECSSCEE------EEESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             ChhheeeccCccc------cccceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            4456776554432      233456778888899999999999 444444444455444

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=90.69  E-value=1.2  Score=34.56  Aligned_cols=69  Identities=13%  Similarity=0.074  Sum_probs=38.6

Q ss_pred             ecCCceEEEEEEEee-ecC--CeeEEEECCEEEEeccCCcc-ceEE-EccCceEEEcCCCCCCCe-EEEEEEEeCC
Q psy15127        252 WNHPRVNRLSCFAEG-SPL--PSVFWTQEGSQVLMFPGNAY-GHLH-VTQEGTLRIQGVQKEDAG-FFVCSALSVA  321 (633)
Q Consensus       252 ~~~g~~~~l~C~~~g-~p~--~~v~W~~~g~~~~~~~~~~~-~~~~-~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~  321 (633)
                      +..|..+++.|.+.+ .|.  ..+.|++....+..-.-... .... ......+++.-. .+|.| .|+|.|.-..
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l   86 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLHI   86 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEee
Confidence            357899999999965 444  47899986655431100000 0000 001124555554 55555 9999996443

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=90.38  E-value=1.1  Score=35.11  Aligned_cols=38  Identities=32%  Similarity=0.538  Sum_probs=30.0

Q ss_pred             ccceEEEccCCCCCCeEEEEEEEeCCceE-EEEEEEEEE
Q psy15127        121 DDRSLQIENVGPQDEGLYICDVENLVGSI-SLRASLTVH  158 (633)
Q Consensus       121 ~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~-s~~~~l~V~  158 (633)
                      .+-+|.|..++..|+|.|.-++.+..|.. ...+.|.|.
T Consensus        69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence            35689999999999999999999998884 566666664

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PHA03042 CD47-like protein; Provisional

Probab=90.03  E-value=2  Score=39.81  Aligned_cols=69  Identities=13%  Similarity=0.166  Sum_probs=45.7

Q ss_pred             ceEEEEEEEeee-----cCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy15127        256 RVNRLSCFAEGS-----PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL  330 (633)
Q Consensus       256 ~~~~l~C~~~g~-----p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  330 (633)
                      +++.+.|.+..-     ....+.|..++..+....+.        ...+|.+.. ...-.|.|+|+|.+..........+
T Consensus        32 ~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t--------n~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~IeL  102 (286)
T PHA03042         32 KTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT--------NTSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIEL  102 (286)
T ss_pred             ceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC--------cceEEEEec-cccCCCceeEEEeecccCccEEEEE
Confidence            789999998653     33579999999987644332        113455543 3334699999998876555555555


Q ss_pred             EEE
Q psy15127        331 QVR  333 (633)
Q Consensus       331 ~v~  333 (633)
                      +..
T Consensus       103 k~~  105 (286)
T PHA03042        103 QYV  105 (286)
T ss_pred             EEE
Confidence            544

>COG4733 Phage-related protein, tail component [Function unknown]

Probab=89.84  E-value=1.3  Score=47.73  Aligned_cols=125  Identities=10%  Similarity=0.012  Sum_probs=67.6

Q ss_pred             eeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEE
Q psy15127        467 TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRIT  546 (633)
Q Consensus       467 ~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~  546 (633)
                      ....+.+.+|.+ -.|.++|+|.|..|....-..+..+ ....+-.+||... .     +       ....+ --.+.+.
T Consensus       658 ~~~~~~~~gi~~-GqY~i~VrAiN~~g~~~~~a~s~~f-~i~g~~~Ppp~~~-t-----~-------~a~~i-t~~~~l~  721 (952)
T COG4733         658 SAAGFDVEGIPA-GQYAIRVRAINVFEPNSPDATAYEF-ALNGKKVPPPKAM-I-----Y-------DAVII-TLVIRLV  721 (952)
T ss_pred             cccceeecCcCc-cceEEEEEEeeccCCCCCCcceeEE-EecCCCCCCCccc-c-----c-------ceEEE-EeeeeEE
Confidence            467799999988 6899999999999986443322112 2222222222110 0     0       11111 1345566


Q ss_pred             EEEecCCCcccccchhhhhcc-eeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEe--eccccceeEEEEEecc
Q psy15127        547 WEVSWGSVPQHLLDEARARLG-TKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTV--THLRKFTKYEFFLVPF  623 (633)
Q Consensus       547 W~~p~~~~p~~~~~~~~~i~~-y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i--~~L~~~t~Y~~~v~a~  623 (633)
                      |--|           -+.+.. |..+++....+.+.             .....++.....+  .+|+++..|.|++++.
T Consensus       722 v~dP-----------t~~~d~~~sei~~s~~~d~~~-------------~Ar~LG~~~~~~~~~~~i~~g~~~~F~~R~V  777 (952)
T COG4733         722 VGDP-----------TGAVDITSTEIRSAVIADGNF-------------QARSLGNLNYPGLFSVGIQAGLTFWFRNRNV  777 (952)
T ss_pred             EecC-----------CcceEEeeeeeeeeccccchh-------------HHhhhhccccccccccCcCCCceEEEEeeec
Confidence            6622           122222 22444444443331             0111222222222  5899999999999999


Q ss_pred             cccccccc
Q psy15127        624 FKTVEGAR  631 (633)
Q Consensus       624 n~~g~g~~  631 (633)
                      |..|-..+
T Consensus       778 n~vG~~~~  785 (952)
T COG4733         778 DLVGNNDK  785 (952)
T ss_pred             cccccccc
Confidence            99887654

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=89.53  E-value=3.6  Score=32.26  Aligned_cols=36  Identities=19%  Similarity=0.369  Sum_probs=27.9

Q ss_pred             cceEEEc-cCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127        289 YGHLHVT-QEGTLRIQGVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       289 ~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                      ..++... .+-+|.|+.++..|+|.|.-++++..|..
T Consensus        61 n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V   97 (108)
T PF11465_consen   61 NNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKV   97 (108)
T ss_dssp             HHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCE
T ss_pred             cceEeeeccCceEEEeecCcccCceEEEEEEcCCCcE
Confidence            3455554 45589999999999999999999999887

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>KOG3632|consensus

Probab=89.22  E-value=0.17  Score=54.72  Aligned_cols=158  Identities=20%  Similarity=0.153  Sum_probs=94.6

Q ss_pred             CCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCC-CCCeEEEEEEEEec
Q psy15127        413 PAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLK-PDTSYMFIVRAENS  491 (633)
Q Consensus       413 p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~-p~~~Y~~~v~a~n~  491 (633)
                      |...........++.|.|++|...- .-++...|.+....+-...     ....+.+...+..|. -...|.+.+.+..+
T Consensus       581 pr~~~~vkqla~sv~vawepps~pP-~~~~~~~~~~~v~~elrq~-----l~~gs~tka~~E~ld~~a~s~~isvq~ltS  654 (1335)
T KOG3632|consen  581 PRTGAAVKQLAGSVHVAWEPPSSPP-FTAPARMIGATVLMELRQT-----LYAGSLTKAMQESLDNSAHSGYISVQRLTS  654 (1335)
T ss_pred             ccchhhhhhhccceeeeccCCCCCC-ccccceeeeeecchhhhhh-----cccccchHHHHhhccccCCceeeehhhhhc
Confidence            3444445556789999999976431 1244555555322111000     011122233333333 45678888889999


Q ss_pred             cccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEE
Q psy15127        492 HGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVV  571 (633)
Q Consensus       492 ~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i  571 (633)
                      .|........  ..+.+..+..|.++                ++.+++.++..++|-+         .+  .   .|-.+
T Consensus       655 rGsqd~lrc~--Llvgg~a~vvpsql----------------rv~n~tqtSa~itwvp---------~n--s---n~~Hv  702 (1335)
T KOG3632|consen  655 RGSQDQLRCI--LLVGGAAPVVPSQL----------------RVWNATQTSAMITWVP---------FN--S---NFLHV  702 (1335)
T ss_pred             cCCCCcceee--Eeccccccccchhh----------------hhhhhhchhhheeeee---------cC--C---Cccee
Confidence            9988766554  44566678788777                8999999999999993         12  1   12133


Q ss_pred             EEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccc
Q psy15127        572 NLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFF  624 (633)
Q Consensus       572 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n  624 (633)
                      .|-....-.              .  .......|+|.+|.|++.|.++|-|.-
T Consensus       703 iyln~eE~~--------------p--s~a~~y~ytf~~lrpgt~y~a~vea~~  739 (1335)
T KOG3632|consen  703 IYLNAEEPR--------------P--SVAEMYNYTFMRLRPGTDYWASVEAAL  739 (1335)
T ss_pred             eecCCccCC--------------C--chhhhhHHHHhccCCCCccceeccccc
Confidence            332221111              1  223456799999999999999997653

>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi

Probab=88.57  E-value=16  Score=35.14  Aligned_cols=29  Identities=41%  Similarity=0.488  Sum_probs=24.6

Q ss_pred             eeceEEEecCCCCCeEEEEEEEEec-cccC
Q psy15127        467 TSTSITVSDLKPDTSYMFIVRAENS-HGLG  495 (633)
Q Consensus       467 ~~~~~~i~~L~p~~~Y~~~v~a~n~-~G~g  495 (633)
                      ..+.++|.+|.|++.|.|.|-|+|. -|.+
T Consensus        13 ~~t~~t~~~L~p~t~YyfdVF~vn~~~n~s   42 (300)
T PF10179_consen   13 QKTNQTLSGLKPDTTYYFDVFVVNQLTNNS   42 (300)
T ss_pred             CCceEEeccCCCCCeEEEEEEEEECCCCce
Confidence            4578999999999999999999998 4443

The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.

>PHA02982 hypothetical protein; Provisional

Probab=87.89  E-value=2.4  Score=37.46  Aligned_cols=30  Identities=20%  Similarity=0.463  Sum_probs=25.4

Q ss_pred             cCceEEEcCCCCCCCeEEEEEEEeCCceeE
Q psy15127        296 QEGTLRIQGVQKEDAGFFVCSALSVAGSTT  325 (633)
Q Consensus       296 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  325 (633)
                      ..++|+|.++..+..|=|+|.+....+..+
T Consensus        98 ~~STLTIkk~~i~N~GCYtc~~ks~~~k~E  127 (251)
T PHA02982         98 NSSTFTMKKPDPQNLGCFTCEAKDAEGKEE  127 (251)
T ss_pred             cceeEEeccCCcccCCceEEEEecCCCchh
Confidence            456899999999999999999988776553

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=87.58  E-value=2  Score=30.65  Aligned_cols=46  Identities=24%  Similarity=0.431  Sum_probs=31.0

Q ss_pred             EEEEEEecCCCCeEEEEEeeeec-eEEEecCCCCCeEEEEEEEEeccccCC
Q psy15127        447 TVEYFSSDLQTGWVVAAHRITST-SITVSDLKPDTSYMFIVRAENSHGLGI  496 (633)
Q Consensus       447 ~v~~~~~~~~~~~~~~~~~~~~~-~~~i~~L~p~~~Y~~~v~a~n~~G~g~  496 (633)
                      ..+|+..+...+|...   .... .+.+.+|.|| .|.|+|+|.+..|.-.
T Consensus         9 ~Y~Y~l~g~d~~W~~~---~~~~~~~~~~~L~~G-~Y~l~V~a~~~~~~~~   55 (66)
T PF07495_consen    9 RYRYRLEGFDDEWITL---GSYSNSISYTNLPPG-KYTLEVRAKDNNGKWS   55 (66)
T ss_dssp             EEEEEEETTESSEEEE---SSTS-EEEEES--SE-EEEEEEEEEETTS-B-
T ss_pred             EEEEEEECCCCeEEEC---CCCcEEEEEEeCCCE-EEEEEEEEECCCCCcC
Confidence            3455556666788743   2333 8999999888 7999999999988764

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=87.41  E-value=32  Score=34.04  Aligned_cols=77  Identities=14%  Similarity=0.209  Sum_probs=47.7

Q ss_pred             eEEecCCceEEEEEEEe--eecC-CeeEEEECCEEEE------------eccCCccceEEEc---------cCceEEEcC
Q psy15127        249 LLIWNHPRVNRLSCFAE--GSPL-PSVFWTQEGSQVL------------MFPGNAYGHLHVT---------QEGTLRIQG  304 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~--g~p~-~~v~W~~~g~~~~------------~~~~~~~~~~~~~---------~~~~l~i~~  304 (633)
                      .+.++.|..+.|.|...  |+.. ....|..-|-++.            ...-.....+.+.         ..++|+|..
T Consensus       273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk  352 (500)
T PHA02914        273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK  352 (500)
T ss_pred             eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence            34456688999999875  4444 4788987553321            0000111111111         245899999


Q ss_pred             CCCCCCeEEEEEEEeCCceeE
Q psy15127        305 VQKEDAGFFVCSALSVAGSTT  325 (633)
Q Consensus       305 ~~~~d~G~Y~C~a~n~~g~~~  325 (633)
                      +..+..|=|+|+|....-..+
T Consensus       353 a~I~N~GCY~~~a~~g~~~~e  373 (500)
T PHA02914        353 AHINNAGCYEAQAFMGKFKEE  373 (500)
T ss_pred             EEEEcCCceEEEEecCcchhh
Confidence            999999999999977644333

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=87.01  E-value=1.6  Score=31.15  Aligned_cols=26  Identities=19%  Similarity=0.009  Sum_probs=20.2

Q ss_pred             eEEeeccccceeEEEEEeccccccccc
Q psy15127        604 SYTVTHLRKFTKYEFFLVPFFKTVEGA  630 (633)
Q Consensus       604 ~~~i~~L~~~t~Y~~~v~a~n~~g~g~  630 (633)
                      .+.+++|.|| .|.|.|+|.+..|.-.
T Consensus        30 ~~~~~~L~~G-~Y~l~V~a~~~~~~~~   55 (66)
T PF07495_consen   30 SISYTNLPPG-KYTLEVRAKDNNGKWS   55 (66)
T ss_dssp             EEEEES--SE-EEEEEEEEEETTS-B-
T ss_pred             EEEEEeCCCE-EEEEEEEEECCCCCcC
Confidence            8999999999 8999999999877654

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors

Probab=85.51  E-value=5.5  Score=31.60  Aligned_cols=81  Identities=20%  Similarity=0.200  Sum_probs=55.8

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEee--eece-----EEEe--cCCCC
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI--TSTS-----ITVS--DLKPD  479 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~--~~~~-----~~i~--~L~p~  479 (633)
                      +|+.|..+.+.......++--|++....   +.+ ..|.+.|...+  ..|..-....  ...+     ..|.  +..-.
T Consensus         7 ~p~~P~~~~C~S~~~etftC~W~~g~~~---~l~-~~y~L~Y~~~~--~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf   80 (104)
T PF09067_consen    7 PPEKPENLKCFSREMETFTCFWEPGSEG---NLP-TNYTLFYKKEG--EEWKECPDYSTSGPNSTVRHICYFPKSDTSLF   80 (104)
T ss_dssp             HCCCCEEEEEEBSSSS-EEEEEEEESSS---TST-CEEEEEEEETT--SEEEEESESSTTETTEEEEEEEEE-CCGCSSS
T ss_pred             CCCCCccCccCCCCCCcEEEEeeCCCCC---CCC-CcEEEEEEeCC--CCCccCCCeEecCCCCceeEEEEcCCCCeEEE
Confidence            3556777788888889999999998854   333 33999999875  4444322211  1123     5554  88999


Q ss_pred             CeEEEEEEEEeccccC
Q psy15127        480 TSYMFIVRAENSHGLG  495 (633)
Q Consensus       480 ~~Y~~~v~a~n~~G~g  495 (633)
                      +.|.++|.|.|..|.-
T Consensus        81 ~~y~i~V~a~~~~~~~   96 (104)
T PF09067_consen   81 VPYCIQVEATNALGSI   96 (104)
T ss_dssp             SEEEEEEEEEETTEEE
T ss_pred             EEEEEEEEeccCCCcE
Confidence            9999999999999853

The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....

>KOG1026|consensus

Probab=85.19  E-value=1  Score=48.65  Aligned_cols=247  Identities=16%  Similarity=0.125  Sum_probs=130.3

Q ss_pred             ceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcc-----cceEEEccCCCCCCeEEEEEEEeCCceEEEEEE
Q psy15127         80 DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD-----DRSLQIENVGPQDEGLYICDVENLVGSISLRAS  154 (633)
Q Consensus        80 ~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~  154 (633)
                      ++....++...+.|.+.+.+...+.|.++......+......     ...|...+....+.|.+.|...+..-.......
T Consensus        61 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l  140 (774)
T KOG1026|consen   61 NITEIFIENGQLLCIVSGNDVENYTGLRNLTIVVSGLRFSQPRAFHYNSRLRRDNLSTNDTGVLGSLSTNGFETLSLTEL  140 (774)
T ss_pred             hHHHHHHhhhhhcccccCCCcccchhhhccCcccchhheecccceeccccccccccchhhhccccccccccccccccchh
Confidence            445566788889998887766688888877665433222221     223666666667777777776654322222111


Q ss_pred             EEEEeec---------------------------------------------cccccCCCceEEecCCcEEEEEeCCCCC
Q psy15127        155 LTVHLLR---------------------------------------------DDFRAEPKDTRVASGETALLECGPPKGQ  189 (633)
Q Consensus       155 l~V~~~~---------------------------------------------p~~~~~~~~~~~~~g~~~~l~C~~~~~~  189 (633)
                      +.+..+.                                             +...+......+..|..+++.|. ..+.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~c~-~~~~  219 (774)
T KOG1026|consen  141 SLVGNPFTCSCSIRWLDRYREDGFCVPYRGLACLNFLSNGTVANESIQLCGEIENRIRAANLTVEEGSSITLKCS-QAGI  219 (774)
T ss_pred             hhccCCCCcchhhhHHhhhcccCCCCCchhhHHHhhcCCceehhhhhhhhcchhhhhhhhhhhhcccchheeeee-cccC
Confidence            1111110                                             00000001234567899999999 7899


Q ss_pred             CCCeEEEEECCEEeccCCCeeEEeccceeeeEEEeeeEEEEeecCCCCCCccc---ccccceeEEecCCceEEEEEEEee
Q psy15127        190 PEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYI---GRKMASLLIWNHPRVNRLSCFAEG  266 (633)
Q Consensus       190 p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~a~~~~~~~p~~~---~~~~~~~~~~~~g~~~~l~C~~~g  266 (633)
                      |.+.+.|+.++............-.    ....+.-+++|.+.+..+......   ...............-.-.|...+
T Consensus       220 ~vp~~~~~~~~~~~~~~~~~~~~c~----~~~~~~~~~~c~~E~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~C~~~~  295 (774)
T KOG1026|consen  220 PVPCHYWFPNCLASSNTNQTSSLCR----SECEVLENDLCIAENAVARSNPSILLVVDLPKAEVLLCSPLSDHHNCIPIG  295 (774)
T ss_pred             CCcceeeecccccccCCCccccccc----ccceeeechhhHHHHhhhhcCceeeeEEecccccccCCCCccccCceeeee
Confidence            9999999987765544322221111    111112238898887765332110   001111111111122245566544


Q ss_pred             ---ecCCeeEEEECCEEEEeccCCccceEEEccC-ceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEe
Q psy15127        267 ---SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE  334 (633)
Q Consensus       267 ---~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  334 (633)
                         +|.+...|..++..+.-...   ........ .-+........+.|.|+|++.+..|.........+..
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~g~---~~~t~s~~~~C~~~~~~~h~~~~~~~~~~e~~~g~~~~r~~g~~~~  364 (774)
T KOG1026|consen  296 ITANPGPALHWCYNGSGLNYRGT---VCVTKSGKEQCLPWNDPPHSHNGNYTLFPELPGGKNYCRNPGGFMS  364 (774)
T ss_pred             ccCCCCCceeeeecCccceEecc---cccccccCcCCcccCcCcccccCcceeeecccCccccccCcCcccc
Confidence               45567889888865431111   00111111 2333333355678999999999988776655555543

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=85.04  E-value=13  Score=27.82  Aligned_cols=51  Identities=22%  Similarity=0.349  Sum_probs=31.8

Q ss_pred             CeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEE-EeCCceeEEEEEEEE
Q psy15127        270 PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA-LSVAGSTTVRAFLQV  332 (633)
Q Consensus       270 ~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a-~n~~g~~~~~~~l~v  332 (633)
                      +.+.|.-.+...            ......+.......+|+|.+.|.| .+..-.......|.+
T Consensus        27 ~~~~l~~~~~k~------------~~~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   27 PSLFLENPGKKS------------LETKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             EEEEEECSSCEE------------EEESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             hhheeeccCccc------------cccceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            466777655433            123345677778889999999999 555444444444433

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>KOG3632|consensus

Probab=83.99  E-value=3  Score=45.71  Aligned_cols=133  Identities=17%  Similarity=0.156  Sum_probs=77.3

Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEE
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAE  489 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~  489 (633)
                      +.+|..+++...+..+..++|-+-....    .   . +.|....   +..  ........++|.+|.|++.|..+|-|.
T Consensus       672 ~vvpsqlrv~n~tqtSa~itwvp~nsn~----~---H-viyln~e---E~~--ps~a~~y~ytf~~lrpgt~y~a~vea~  738 (1335)
T KOG3632|consen  672 PVVPSQLRVWNATQTSAMITWVPFNSNF----L---H-VIYLNAE---EPR--PSVAEMYNYTFMRLRPGTDYWASVEAA  738 (1335)
T ss_pred             cccchhhhhhhhhchhhheeeeecCCCc----c---e-eeecCCc---cCC--CchhhhhHHHHhccCCCCccceecccc
Confidence            3568888888999999999999866321    1   1 1222111   111  011234568899999999999999887


Q ss_pred             ec-ccc--------CCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccc
Q psy15127        490 NS-HGL--------GIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLD  560 (633)
Q Consensus       490 n~-~G~--------g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~  560 (633)
                      -. .+.        +.-.... .++|+.+-|..|+..+           .   .-...+...+.++|.||  -+.+....
T Consensus       739 ~p~q~pwdl~~v~~etr~atv-~f~tLpAGppappldV-----------~---vE~g~spg~l~vswrPp--tldsag~s  801 (1335)
T KOG3632|consen  739 LPRQEPWDLRMVPMETRQATV-LFRTLPAGPPAPPLDV-----------K---VETGGSPGRLEVSWRPP--TLDSAGCS  801 (1335)
T ss_pred             cCcCCCcccccchhhhhccce-eeecccCCCCCCchhe-----------e---eecCCCCceeeeeccCc--eecccccc
Confidence            55 221        1111222 3566666555555432           0   23355788999999955  12222223


Q ss_pred             hhhhhcceeEEEE
Q psy15127        561 EARARLGTKVVNL  573 (633)
Q Consensus       561 ~~~~i~~y~~i~~  573 (633)
                      .+-.++|| -++-
T Consensus       802 ngv~vtgY-avya  813 (1335)
T KOG3632|consen  802 NGVAVTGY-AVYA  813 (1335)
T ss_pred             Cceeeeee-eeee
Confidence            34567778 5543

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=82.56  E-value=20  Score=27.57  Aligned_cols=79  Identities=22%  Similarity=0.219  Sum_probs=50.7

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCC-eEEEEeCCccCCCCCeEEcc---cceEEEccCCCCCCeEEEEEEEeCCceE
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPTGRAKILD---DRSLQIENVGPQDEGLYICDVENLVGSI  149 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p-~i~W~~~~~~i~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n~~g~~  149 (633)
                      +...|+...+..|+++.+.|+.+ -+.| .+.|.-.-.     +.....   -..+.|.+++. | ..-.|.+.-.....
T Consensus         6 v~v~P~~~vV~~G~Sv~VNCSts-C~~p~~~GLET~L~-----k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~   77 (91)
T PF03921_consen    6 VRVSPEEPVVPPGGSVWVNCSTS-CPQPEKIGLETSLS-----KTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQS   77 (91)
T ss_dssp             EEEESSEEEEETTEEEEEEEEES-SSS-SEEEEESSSE-----EEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEE
T ss_pred             EEEECCccEECCCCCEEEEEcCC-CCCCCcceEEEecC-----CcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEE
Confidence            45678889999999999999985 3444 344432111     111111   13677888886 4 56789998754457


Q ss_pred             EEEEEEEEEee
Q psy15127        150 SLRASLTVHLL  160 (633)
Q Consensus       150 s~~~~l~V~~~  160 (633)
                      .+.+.|+|..+
T Consensus        78 ~~~~~ItVY~~   88 (91)
T PF03921_consen   78 SASANITVYKP   88 (91)
T ss_dssp             EEEEEEEEEB-
T ss_pred             EeEEeeEEeCC
Confidence            88889999877

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

>KOG4228|consensus

Probab=80.56  E-value=5.1  Score=45.00  Aligned_cols=105  Identities=18%  Similarity=0.079  Sum_probs=69.2

Q ss_pred             EEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEE
Q psy15127        371 LYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY  450 (633)
Q Consensus       371 ~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~  450 (633)
                      .|.|.+....|.....+.+.|...|..               +....+......+....|..+..      ....|.+.+
T Consensus         1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~---------------~~~~~vt~~~~~~~~~~~~~~~t------~~~~y~v~~   59 (1087)
T KOG4228|consen    1 NYTCLARSGLGPGELITYVRVNGGPPG---------------PSTPNVTGSTATSWVQAELLGST------WPNYYQVIF   59 (1087)
T ss_pred             CeeeeecccCCCccceEEEEecCCCCC---------------CCCcccccccccceeehhhccCC------Chhhhheee
Confidence            389999999988888788888765443               33444555667778888887763      344566666


Q ss_pred             EEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCC
Q psy15127        451 FSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVS  501 (633)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~  501 (633)
                      +.....  .... .......+....+.+...+.+  .+.|..|.+.++...
T Consensus        60 ~~~~s~--~~~~-~~~~~~~~s~~~~~~~~~~~~--~evnt~~~a~~~~~~  105 (1087)
T KOG4228|consen   60 KALSSG--YGYI-DVDLTTRLSYPCLSPPSFLEL--VEVNTIGRAPFQCPV  105 (1087)
T ss_pred             eEeccC--ccee-eccceeecccCCCCCcchhhh--hhccccccccccccc
Confidence            654332  1111 222234477778888888888  888999988876554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	633
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		6e-25
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		3e-05
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		6e-25
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		3e-05
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		2e-20
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		8e-05
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		3e-15
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		8e-04
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		2e-14
1uem_A	117	Solution Structure Of The First Fibronectin Type Ii		3e-14
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		3e-12
3kld_A	384	Ptprg Cntn4 Complex Length = 384		8e-12
3kld_A	384	Ptprg Cntn4 Complex Length = 384		7e-09
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		8e-12
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		7e-09
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		3e-11
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-11
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-06
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-11
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-06
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-11
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		5e-11
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		3e-08
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		9e-11
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		2e-10
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		4e-10
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		6e-10
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-04
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-09
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-05
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		6e-09
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		9e-09
3puc_A	99	Atomic Resolution Structure Of Titin Domain M7 Leng		9e-09
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		2e-08
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		5e-04
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-08
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		6e-04
3k0w_A	218	Crystal Structure Of The Tandem Ig-Like C2-Type 2 D		1e-06
3s97_C	201	Ptprz Cntn1 Complex Length = 201		2e-06
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		3e-06
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		3e-04
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		3e-06
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		2e-04
2edj_A	100	Solution Structure Of The Fifth Ig-Like Domain From		3e-06
1bpv_A	112	Titin Module A71 From Human Cardiac Muscle, Nmr, 50		4e-06
3ojm_B	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		4e-06
1ii4_E	220	Crystal Structure Of Ser252trp Apert Mutant Fgf Rec		4e-06
1e0o_B	219	Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C		5e-06
1ev2_E	220	Crystal Structure Of Fgf2 In Complex With The Extra		5e-06
1iil_E	220	Crystal Structure Of Pro253arg Apert Mutant Fgf Rec		5e-06
2fdb_P	220	Crystal Structure Of Fibroblast Growth Factor (Fgf)		5e-06
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		5e-06
3oj2_C	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		7e-06
1fhg_A	154	High Resolution Refinement Of Telokin Length = 154		7e-06
1tlk_A	154	X-Ray Structure Determination Of Telokin, The C-Ter		7e-06
2eo9_A	118	Solution Structure Of The Fifth Ig-Like Domain From		9e-06
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		1e-05
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		2e-04
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		1e-05
3lpw_A	197	Crystal Structure Of The Fniii-Tandem A77-A78 From		1e-05
2yr3_A	99	Solution Structure Of The Fourth Ig-Like Domain Fro		3e-05
3kvq_A	108	Crystal Structure Of Vegfr2 Extracellular Domain D7		3e-05
3kvq_A	108	Crystal Structure Of Vegfr2 Extracellular Domain D7		3e-04
3dar_A	105	Crystal Structure Of D2 Domain From Human Fgfr2 Len		3e-05
1wvz_A	104	Solution Structure Of The D2 Domain Of The Fibrobla		3e-05
3caf_A	100	Crystal Structure Of Hfgfr2 D2 Domain Length = 100		4e-05
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		4e-05
1nun_B	230	Crystal Structure Analysis Of The Fgf10-fgfr2b Comp		4e-05
1djs_A	216	Ligand-binding Portion Of Fibroblast Growth Factor		5e-05
1nct_A	106	Titin Module M5, N-Terminally Extended, Nmr Length		6e-05
1tnm_A	100	Tertiary Structure Of An Immunoglobulin-Like Domain		7e-05
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		8e-05
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		2e-04
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		8e-05
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		2e-04
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		1e-04
1x5l_A	111	Solution Structure Of The Second Fn3 Domain Of Eph		1e-04
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		1e-04
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		2e-04
3grw_A	241	Fgfr3 In Complex With A Fab Length = 241		2e-04
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		2e-04
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		2e-04
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		2e-04
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		2e-04
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		2e-04
2dl9_A	103	Solution Structure Of The Ig-Like Domain Of Human L		2e-04
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		3e-04
1e07_A	642	Model Of Human Carcinoembryonic Antigen By Homology		4e-04
1epf_A	191	Crystal Structure Of The Two N-Terminal Immunoglobu		5e-04
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		5e-04
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		5e-04
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		9e-04

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score =  112 bits (280), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/155 (44%), Positives = 84/155 (54%), Gaps = 9/155 (5%)
Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKI----LDDRSL-- 125
           P  I  P+D  V         C+V G P PTI W +D   + T   K       D +L  
Sbjct: 10  PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 126 --QIENVGPQDEGLYICDVENLVG-SISLRASLTVHLLRDDFRAEPKDTRVASGETALLE 182
              ++    QD G Y C  +N VG ++S  ASL + +LRDDFR EPKDTRVA GETALLE
Sbjct: 70  YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLE 129
Query: 183 CGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRT 217
           CGPPKG PEPTL W K+G  +D   + S   S R 
Sbjct: 130 CGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRV 164

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 29/194 (14%)
Query: 168 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPL- 226
           P D  V   E A L C   +G+PEPT+ W K+G+ +     KS  +  +       R + 
Sbjct: 16  PTDLVVKKNEPATLNC-KVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQ 74
Query: 227 ---------YWNVARPR-ANLNPRYIGRKMASLL--IWNHPRVNR--------LSCFA-E 265
                    YW VA+ R      R+   ++A L       P+  R        L C   +
Sbjct: 75  GKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPK 134
Query: 266 GSPLPSVFWTQEGSQVLMFPGNAYG---HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 322
           G P P++ W ++G  +      ++G    + +   G L I  V+  D G + C A ++ G
Sbjct: 135 GIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
Query: 323 ---STTVRAFLQVR 333
              S+  +  +QV+
Sbjct: 195 TRESSYAKLIVQVK 208

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score =  112 bits (280), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/155 (44%), Positives = 84/155 (54%), Gaps = 9/155 (5%)
Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKI----LDDRSL-- 125
           P  I  P+D  V         C+V G P PTI W +D   + T   K       D +L  
Sbjct: 10  PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 126 --QIENVGPQDEGLYICDVENLVG-SISLRASLTVHLLRDDFRAEPKDTRVASGETALLE 182
              ++    QD G Y C  +N VG ++S  ASL + +LRDDFR EPKDTRVA GETALLE
Sbjct: 70  YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLE 129
Query: 183 CGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRT 217
           CGPPKG PEPTL W K+G  +D   + S   S R 
Sbjct: 130 CGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRV 164

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 29/194 (14%)
Query: 168 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPL- 226
           P D  V   E A L C   +G+PEPT+ W K+G+ +     KS  +  +       R + 
Sbjct: 16  PTDLVVKKNEPATLNC-KVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQ 74
Query: 227 ---------YWNVARPR-ANLNPRYIGRKMASLL--IWNHPRVNR--------LSCFA-E 265
                    YW VA+ R      R+   ++A L       P+  R        L C   +
Sbjct: 75  GKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPK 134
Query: 266 GSPLPSVFWTQEGSQVLMFPGNAYG---HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 322
           G P P++ W ++G  +      ++G    + +   G L I  V+  D G + C A ++ G
Sbjct: 135 GIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
Query: 323 ---STTVRAFLQVR 333
              S+  +  +QV+
Sbjct: 195 TRESSYAKLIVQVK 208

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 78/148 (52%), Gaps = 18/148 (12%)
Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILW---------RRDDGK-----MPTGRA 117
           P  +  PSD  V  G      C+  G P PTI W          +DD +     +P+G  
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 118 KILDDRSLQIENVGPQDEGLYICDVENLVG-SISLRASLTVHLLRDDFRAEPKDTRVASG 176
             L  R +      P DEG+Y+C   N +G ++S  ASL V +LRDDFR  P D  VA G
Sbjct: 70  FFL--RIVHGRKSRP-DEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVG 126
Query: 177 ETALLECGPPKGQPEPTLHWKKNGQFID 204
           E A++EC PP+G PEPT+ WKK+G  +D
Sbjct: 127 EPAVMECQPPRGHPEPTISWKKDGSPLD 154

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 49/208 (23%)
Query: 168 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES----SKSLDLSRRTLGWLRV 223
           P D  V+ GE A L C   +G+P PT+ W K G+ ++ +     S  + L   +L +LR+
Sbjct: 16  PSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRI 74
Query: 224 ------RP---LYWNVARPRANLNPRYIGRKM---ASL---LIWNHPRVN---------- 258
                 RP   +Y  VAR        Y+G  +   ASL   ++ +  R N          
Sbjct: 75  VHGRKSRPDEGVYVCVAR-------NYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGE 127
Query: 259 --RLSCF-AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 315
              + C    G P P++ W ++GS     P +        + G L I   +K DAG +VC
Sbjct: 128 PAVMECQPPRGHPEPTISWKKDGS-----PLDDKDERITIRGGKLMITYTRKSDAGKYVC 182
Query: 316 SALSVAGSTTVRAFLQVREFCVLPKGTF 343
              ++ G        +V E  VL + +F
Sbjct: 183 VGTNMVGERES----EVAELTVLERPSF 206

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 110/283 (38%), Gaps = 33/283 (11%)
Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP----TGRAKILDDRSLQIENV 130
           +S+    T   G  V   C V GDP+PTI W+++   +       R  +L   +LQI  +
Sbjct: 125 LSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRL 184
Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHLLRDD-------FRAEPKDTRVASGETALLEC 183
            P D G+Y C   N   S        V +L D        F   P +     G+ A+LEC
Sbjct: 185 QPGDSGVYRCSARN-PASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLEC 243
Query: 184 GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL----------GWLRVRPLYWN---- 229
               G P P+  W +  + I L S K   L    L          G       Y N    
Sbjct: 244 C-VSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENIS 302
Query: 230 VARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAY 289
            +     L P +     ++L  +    +    C   G P+P+V W + G  V+  P +  
Sbjct: 303 ASAELTVLVPPWFLNHPSNLYAYESMDI-EFECAVSGKPVPTVNWMKNGDVVI--PSD-- 357
Query: 290 GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332
            +  +     LRI GV K D GF+ C A + AG+    A L V
Sbjct: 358 -YFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 75/187 (40%), Gaps = 31/187 (16%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL--GWL 221
           F +EP D     G   LL C     +  P + WKK+G  + L     +D  ++ L  G L
Sbjct: 24  FVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILAL----GMDDRKQQLPNGSL 79
Query: 222 RVRP-LYWNVARPRANL--------NPRYIGRKMASLLIWNHPRVNR------------- 259
            ++  L+    +P   L        +   I  + A +++    R                
Sbjct: 80  LIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTV 139
Query: 260 -LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            L C   G P+P++ W +    +   PG++   + V   G L+I  +Q  D+G + CSA 
Sbjct: 140 LLKCEVIGDPMPTIHWQKNQQDLNPIPGDS--RVVVLPSGALQISRLQPGDSGVYRCSAR 197
Query: 319 SVAGSTT 325
           + A + T
Sbjct: 198 NPASTRT 204

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 132/310 (42%), Gaps = 67/310 (21%)
Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD-DRS----LQIEN 129
           I EP D   +SG V  FVC+  GDP P + W +   K+ + R + ++ D S    L+I+ 
Sbjct: 10  IKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQP 69
Query: 130 V-GPQDEGLYICDVENLVGSISLRASLTVHLLRDD--------FRAEPKDTRVASGETAL 180
           +  P+DE +Y C  +N VG I++ A LTV  LR+D            P+   V    TA 
Sbjct: 70  LRTPRDENVYECVAQNSVGEITVHAKLTV--LREDQLPSGFPNIDMGPQLKVVERTRTAT 127
Query: 181 LECGPPKGQPEPTLHWKK----------NGQF-------IDLESSKSLD------LSRRT 217
           + C    G P+P + W K          NG+        + +ESS+  D      ++  +
Sbjct: 128 MLCA-ASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNS 186
Query: 218 LGWLRVRP--LYWNVARPRANLNPRYIGRKMASLLIWNH---PRVN-RLSCFAEGSPLPS 271
            G     P  LY  V     N+ PR+      S+L  +H   P  N  ++C A GSP+P 
Sbjct: 187 AGVRYSSPANLYVRV----QNVAPRF------SILPMSHEIMPGGNVNITCVAVGSPMPY 236
Query: 272 VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 331
           V W Q    +        G         L +  V+  D+  + C A+S  G     A + 
Sbjct: 237 VKWMQGAEDLTPEDDMPVGR------NVLELTDVK--DSANYTCVAMSSLGVIEAVAQIT 288
Query: 332 VREFCVLPKG 341
           V+    LPK 
Sbjct: 289 VKS---LPKA 295

>pdb|1UEM|A Chain A, Solution Structure Of The First Fibronectin Type Iii Domain Of Human Kiaa1568 Protein Length = 117

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
            PGPP+ P + + T+ SVTL W   +P   G  P   Y +E FS  +   W   A+ + +
Sbjct: 15  LPGPPSKPQVTDVTKNSVTLSW---QPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKT 71
Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
           T  TV  L+P+T Y+F+VRA N  GL  PSP+S   RT
Sbjct: 72  TLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRT 109

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 5/131 (3%)
Query: 73  FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD-DRSLQIENVG 131
           +P    S   VL G  +   C   G P P I W +  G +P+ +AK  + +++L+I NV 
Sbjct: 224 YPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVS 283
Query: 132 PQDEGLYICDVENLVGSISLRASLTVHLLRDDF-RAEPKDTRVASGETALLECGPPKGQP 190
            +D G Y C   N +GSI  R +++V +    +   EPK+  +A GE   L C    G P
Sbjct: 284 EEDSGEYFCLASNKMGSI--RHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCR-ANGNP 340
Query: 191 EPTLHWKKNGQ 201
           +PT+ W  NG+
Sbjct: 341 KPTVQWMVNGE 351

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 64/135 (47%), Gaps = 19/135 (14%)
Query: 73  FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRS-LQIENVG 131
           FP + P++     G+ V+  C   G+P+PTILWRR DGK    +A+       L+I N  
Sbjct: 211 FPETVPAE----KGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQ 266
Query: 132 PQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEP------KDTRVASGETALLECGP 185
            +D G Y C  EN  G    +  LT       F A+P       D  VA  E+   EC  
Sbjct: 267 QEDAGSYECVAENSRGKNVAKGQLT-------FYAQPNWVQIINDIHVAMEESVFWEC-K 318
Query: 186 PKGQPEPTLHWKKNG 200
             G+P+PT  W KNG
Sbjct: 319 ANGRPKPTYRWLKNG 333

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 102/271 (37%), Gaps = 35/271 (12%)
Query: 89  VEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRSLQIENVGP-QDEGLYICDVEN 144
           V+  C V G+P P I W+ +   +  G   R  ++D  SL I N    QD G Y C   N
Sbjct: 26  VKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG-SLLINNPNKTQDAGTYQCIATN 84
Query: 145 LVGSISLRASLTVHLLRDDFRAEPKDT-RVASGETALLECGPPKGQPEPTLHW------- 196
             G+I  R +       ++F+   + T  V  G+  +L CGPP    E +  W       
Sbjct: 85  SFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPS 144
Query: 197 -KKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRY-IGRKMASLLIWNH 254
            + N +F+  E+                  +  N       L P   +  +   ++    
Sbjct: 145 YQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYE 204
Query: 255 PRVN---------------RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 299
           P++                +L CFA G+P+P++ W +   + +      +        G 
Sbjct: 205 PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRH-----KSNGI 259
Query: 300 LRIQGVQKEDAGFFVCSALSVAGSTTVRAFL 330
           L I   Q+EDAG + C A +  G    +  L
Sbjct: 260 LEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 64/135 (47%), Gaps = 19/135 (14%)
Query: 73  FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRS-LQIENVG 131
           FP + P++     G+ V+  C   G+P+PTILWRR DGK    +A+       L+I N  
Sbjct: 210 FPETVPAE----KGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQ 265
Query: 132 PQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEP------KDTRVASGETALLECGP 185
            +D G Y C  EN  G    +  LT       F A+P       D  VA  E+   EC  
Sbjct: 266 QEDAGSYECVAENSRGKNVAKGQLT-------FYAQPNWVQIINDIHVAMEESVFWEC-K 317
Query: 186 PKGQPEPTLHWKKNG 200
             G+P+PT  W KNG
Sbjct: 318 ANGRPKPTYRWLKNG 332

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 102/271 (37%), Gaps = 35/271 (12%)
Query: 89  VEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRSLQIENVGP-QDEGLYICDVEN 144
           V+  C V G+P P I W+ +   +  G   R  ++D  SL I N    QD G Y C   N
Sbjct: 25  VKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG-SLLINNPNKTQDAGTYQCIATN 83
Query: 145 LVGSISLRASLTVHLLRDDFRAEPKDT-RVASGETALLECGPPKGQPEPTLHW------- 196
             G+I  R +       ++F+   + T  V  G+  +L CGPP    E +  W       
Sbjct: 84  SFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPS 143
Query: 197 -KKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRY-IGRKMASLLIWNH 254
            + N +F+  E+                  +  N       L P   +  +   ++    
Sbjct: 144 YQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYE 203
Query: 255 PRVN---------------RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 299
           P++                +L CFA G+P+P++ W +   + +      +        G 
Sbjct: 204 PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRH-----KSNGI 258
Query: 300 LRIQGVQKEDAGFFVCSALSVAGSTTVRAFL 330
           L I   Q+EDAG + C A +  G    +  L
Sbjct: 259 LEIPNFQQEDAGSYECVAENSRGKNVAKGQL 289

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 116/309 (37%), Gaps = 55/309 (17%)
Query: 72  PFPISEPSDATVLSGSV-VEFVCRVGGDPLPTILWRRDD----GKMPTGRAKILDDRSLQ 126
           P  + EP++    S S   E  C+  G+P+P I+W R D    G +P G  +I  D  L 
Sbjct: 39  PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP-GLRQISSDGKLV 97
Query: 127 IENVGPQD------EGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETAL 180
                 +D        +Y C   N  GSI  R      ++   + A+     V  G +A+
Sbjct: 98  FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAV 157
Query: 181 LECGPPKGQPE--PTLHW------------KKNGQFIDLES---------------SKSL 211
           ++C  P    +    + W            + +G+++ L S               S   
Sbjct: 158 IKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQC 217
Query: 212 DLSRRTLGWLRVRPLYWN--VARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPL 269
               R  G  R+        +  P ++  P+ +      +  ++      L C A+G P+
Sbjct: 218 RTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPV 277
Query: 270 PSVFWTQ--EGS---QVLMFPGNAYGHLHVTQ-EGTLRIQGVQKEDAGFFVCSALSVAGS 323
           P   W +  EG+   Q ++       +  V Q  GTL I+    ED+G ++C   +  G 
Sbjct: 278 PVFRWYKFIEGTTRKQAVVL------NDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG 331
Query: 324 TTVRAFLQV 332
            +V   L V
Sbjct: 332 ESVETVLTV 340

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 19/150 (12%)
Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD-DRS----LQIEN 129
           I EP D   +SG V  FVC+  GDP P + W +   K+ + R + ++ D S    L+I+ 
Sbjct: 10  IKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQP 69
Query: 130 V-GPQDEGLYICDVENLVGSISLRASLTVHLLRDD--------FRAEPKDTRVASGETAL 180
           +  P+DE +Y C  +N VG I++ A LTV  LR+D            P+   V    TA 
Sbjct: 70  LRTPRDENVYECVAQNSVGEITVHAKLTV--LREDQLPSGFPNIDMGPQLKVVERTRTAT 127
Query: 181 LECGPPKGQPEPTLHWKKNGQFIDLESSKS 210
           + C    G P+P + W K+  F+ ++ S S
Sbjct: 128 MLCA-ASGNPDPEITWFKD--FLPVDPSAS 154

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 83/205 (40%), Gaps = 46/205 (22%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
           F  EPKD    SG  A   C    G P+P + W K G+ ++ +  ++++        LR+
Sbjct: 9   FIKEPKDQIGVSGGVASFVCQA-TGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRI 67
Query: 224 RPL--------YWNVAR------------------------PRANLNPRYIGRKMASLLI 251
           +PL        Y  VA+                        P  ++ P+        L +
Sbjct: 68  QPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQ--------LKV 119
Query: 252 WNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAG 311
               R   + C A G+P P + W ++   + + P  + G +   + G L+I+  ++ D G
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDF--LPVDPSASNGRIKQLRSGALQIESSEETDQG 177
Query: 312 FFVCSALSVAG---STTVRAFLQVR 333
            + C A + AG   S+    +++VR
Sbjct: 178 KYECVATNSAGVRYSSPANLYVRVR 202

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 19/150 (12%)
Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD-DRS----LQIEN 129
           I EP D   +SG V  FVC+  GDP P + W +   K+ + R + ++ D S    L+I+ 
Sbjct: 10  IKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQP 69
Query: 130 V-GPQDEGLYICDVENLVGSISLRASLTVHLLRDD--------FRAEPKDTRVASGETAL 180
           +  P+DE +Y C  +N VG I++ A LTV  LR+D            P+   V    TA 
Sbjct: 70  LRTPRDENVYECVAQNSVGEITVHAKLTV--LREDQLPSGFPNIDMGPQLKVVERTRTAT 127
Query: 181 LECGPPKGQPEPTLHWKKNGQFIDLESSKS 210
           + C    G P+P + W K+  F+ ++ S S
Sbjct: 128 MLCA-ASGNPDPEITWFKD--FLPVDPSAS 154

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 83/205 (40%), Gaps = 46/205 (22%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
           F  EPKD    SG  A   C    G P+P + W K G+ ++ +  ++++        LR+
Sbjct: 9   FIKEPKDQIGVSGGVASFVCQA-TGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRI 67
Query: 224 RPL--------YWNVAR------------------------PRANLNPRYIGRKMASLLI 251
           +PL        Y  VA+                        P  ++ P+        L +
Sbjct: 68  QPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQ--------LKV 119
Query: 252 WNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAG 311
               R   + C A G+P P + W ++   + + P  + G +   + G L+I+  ++ D G
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDF--LPVDPSASNGRIKQLRSGALQIESSEETDQG 177
Query: 312 FFVCSALSVAG---STTVRAFLQVR 333
            + C A + AG   S+    +++VR
Sbjct: 178 KYECVATNSAGVRYSSPANLYVRVR 202

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 23/164 (14%)
Query: 78  PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL--DDRS---LQIENV-G 131
           P D T +SG V  F+C+  GDP P I+W +   K+   R +++  DD S   L+I+ +  
Sbjct: 13  PVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRT 72
Query: 132 PQDEGLYICDVENLVGSISLRASLTVHLLRDD--------FRAEPKDTRVASGETALLEC 183
           P+DE +Y C   N VG IS+   LTV  LR+D            P+   V    TA + C
Sbjct: 73  PRDEAIYECVASNNVGEISVSTRLTV--LREDQIPRGFPTIDMGPQLKVVERTRTATMLC 130
Query: 184 GPPKGQPEPTLHWKKNGQFIDLESSKS----LDLSRRTLGWLRV 223
               G P+P + W K+  F+ +++S +      L   ++G L++
Sbjct: 131 A-ASGNPDPEITWFKD--FLPVDTSNNNGRIKQLRSESIGALQI 171

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 78  PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRS-LQIENVGPQDEG 136
           P+D   L+G +V   C   G+P+P I WR+ DG   +   K L     L I+NV  +DEG
Sbjct: 214 PADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS---KWLSSEPLLHIQNVDFEDEG 270
Query: 137 LYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHW 196
            Y C+ EN+ G  + +  + +H  + D+     DT    G      C    G+P P + W
Sbjct: 271 TYECEAENIKGRDTYQGRIIIH-AQPDWLDVITDTEADIGSDLRWSC-VASGKPRPAVRW 328
Query: 197 KKNGQ 201
            ++GQ
Sbjct: 329 LRDGQ 333

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 105/273 (38%), Gaps = 45/273 (16%)
Query: 89  VEFVCRVGGDPLPTILWRRDDGKM---PTGRAKILDDRSLQIENVGPQDEGLYICDVENL 145
           V   CR   +P  T  W+ +  ++   P  R +++    +    V  +D G Y C   N 
Sbjct: 25  VTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNA 84
Query: 146 VGSI-SLRASLTVHLLRDDFRAEPKD-TRVASGETALLECGPPKGQPEPTLHWKKNGQFI 203
            G++ S  ASL    L++ F AE +D  ++  G   +  C PP   P  +  W  N +F 
Sbjct: 85  RGTVVSREASLRFGFLQE-FSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLN-EFP 142
Query: 204 DLESSKSLDLSRRTLGWLRVRPL-------YWNVARPRANLNPRYIGRKMASLLIWNHP- 255
           +   +       +T G L +          Y   A    +   + +  K + L +     
Sbjct: 143 NFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDA 202
Query: 256 --------------------RVNRLSCFAEGSPLPSVFWTQ-EGSQVLMFPGNAYGHLHV 294
                               ++  L CFA G+P+P + W + +GSQ   +         +
Sbjct: 203 RQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW---------L 253
Query: 295 TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR 327
           + E  L IQ V  ED G + C A ++ G  T +
Sbjct: 254 SSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQ 286

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 17/143 (11%)
Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL--DDRSLQIE 128
           KP  +  P D T LSG V  FVC+  G+P P I W +   K+ + R +++  DD +  + 
Sbjct: 7   KPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVL 66
Query: 129 NVGP----QDEGLYICDVENLVGSISLRASLTVHLLRDD--------FRAEPKDTRVASG 176
            + P    +DE +Y C   N +G I+  A L+V  L +D            P+   V  G
Sbjct: 67  RIQPLRVQRDEAIYECTATNSLGEINTSAKLSV--LEEDQLPSGFPTIDMGPQLKVVEKG 124
Query: 177 ETALLECGPPKGQPEPTLHWKKN 199
            TA + C    G P+P + W K+
Sbjct: 125 RTATMLCA-AGGNPDPEISWFKD 146

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 114/282 (40%), Gaps = 29/282 (10%)
Query: 78  PSDATVLSGSVVEFVCRVGGDPL-PTILWRRDDG-KMPTGRAKIL------DDRSLQIEN 129
           PS   +  G    F+C+V GD     I W   +G K+   + +I       D  +L I N
Sbjct: 9   PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYN 68
Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVHLLRD-DFRAEPKDTRVASGETALLECGPPKG 188
               D G+Y C V    G+ S  A++ V + +   F+  P       GE A++ C     
Sbjct: 69  ANIDDAGIYKCVVTAEDGTQS-EATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSS 127
Query: 189 QPEPTLHWKKNGQ---------FIDLESS--------KSLDLSRRTLGWLRVR-PLYWNV 230
            P PT+ WK  G+         FI L ++        K+ + + R  G +  R  + +  
Sbjct: 128 LP-PTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKD 186
Query: 231 ARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYG 290
            +   N+ P    R+       N  +   L C A+G P P++ WT++G  +     +   
Sbjct: 187 IQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEK 246
Query: 291 HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332
           H+       L I+ V K D   +VC A + AG       L+V
Sbjct: 247 HIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 107/292 (36%), Gaps = 29/292 (9%)
Query: 68  ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR---- 123
           A+  P+ I          G  +   C+V G P   I W ++  K+ +  A  +  +    
Sbjct: 2   AMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVA 61
Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVH--LLRDDFRAEPKDTRVASGETALL 181
           SL I  V   D G Y C  EN VG+++  A L +    L   F  + KD     G     
Sbjct: 62  SLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAF 121
Query: 182 ECGPPKGQPEPTLHWKKNGQFI--DLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNP 239
           EC     +P   + W K+G+ +  D     S   +  TL  L+    +       A+ NP
Sbjct: 122 ECRINGSEP-LQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSAS-NP 179
Query: 240 RYIGRKMASLLIWNHP-----------------RVNRLSCFAEGSPLPSVFWTQEGSQVL 282
                  A L +  H                        C   G+    + W ++  ++ 
Sbjct: 180 LGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIR 239
Query: 283 MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
             PG  Y    V    TL +  V K DAG + C A +VAG  +  A L V+E
Sbjct: 240 --PGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE 289

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 13/141 (9%)
Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL--DDRSLQIE 128
           KP  I  P D T LSG V  FVC+  G+P P I W +   K+ + R +++  DD +  + 
Sbjct: 6   KPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVL 65
Query: 129 NVGP----QDEGLYICDVENLVGSISLRASLTV---HLLRDDFRA---EPKDTRVASGET 178
            + P    +DE +Y C   N +G I+  A L+V     L   F +    P+   V    T
Sbjct: 66  RIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKART 125
Query: 179 ALLECGPPKGQPEPTLHWKKN 199
           A + C    G P+P + W K+
Sbjct: 126 ATMLCA-AGGNPDPEISWFKD 145

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 72/182 (39%), Gaps = 31/182 (17%)
Query: 168 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLY 227
           P+D    SG  A   C    G+P+P + W K G+ +  +  + ++        LR++PL 
Sbjct: 13  PEDQTGLSGGVASFVC-QATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPL- 70
Query: 228 WNVARPRA-------------------------NLNPRYIGRKMA-SLLIWNHPRVNRLS 261
             V R  A                          L P +    M   L +    R   + 
Sbjct: 71  -RVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATML 129
Query: 262 CFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 321
           C A G+P P + W ++   + + P  + G +   + G L+I+  ++ D G + C A + A
Sbjct: 130 CAAGGNPDPEISWFKDF--LPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSA 187
Query: 322 GS 323
           G+
Sbjct: 188 GT 189

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 19/153 (12%)
Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD-DRS----LQ 126
           P  I +P D   +SG V  FVC+  GDP P + W +   K+ + R + ++ D S    L+
Sbjct: 7   PVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 127 IENV-GPQDEGLYICDVENLVGSISLRASLTVHLLRDD--------FRAEPKDTRVASGE 177
           I+ +  P+DE +Y C  +N  G +++ A LTV  LR+D            P+   V    
Sbjct: 67  IQPLRTPRDENIYECVAQNPHGEVTVHAKLTV--LREDQLPPGFPNIDMGPQLKVVERTR 124
Query: 178 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKS 210
           TA + C    G P+P + W K+  F+ ++ S S
Sbjct: 125 TATMLCA-ASGNPDPEITWFKD--FLPVDPSTS 154

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 74/183 (40%), Gaps = 27/183 (14%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
           F  +P D    SG  A   C    G P+P + W K G+ ++ +  ++++        LR+
Sbjct: 9   FIKKPVDQIGVSGGVASFVCQA-TGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRI 67
Query: 224 RPL--------YWNVARP---------------RANLNPRYIGRKMA-SLLIWNHPRVNR 259
           +PL        Y  VA+                   L P +    M   L +    R   
Sbjct: 68  QPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTAT 127
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319
           + C A G+P P + W ++   + + P  + G +   + G L+I+  ++ D G + C A +
Sbjct: 128 MLCAASGNPDPEITWFKDF--LPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYECVASN 185
Query: 320 VAG 322
            AG
Sbjct: 186 SAG 188

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Query: 78  PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGL 137
           P++   L G  V   C   G+P+P I WR+ DG +         + +LQI +V  +DEG 
Sbjct: 213 PAETYALVGQQVTLECFAFGNPVPRIKWRKVDGSLSPQWTTA--EPTLQIPSVSFEDEGT 270
Query: 138 YICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWK 197
           Y C+ EN  G  +++  + V   + ++     DT    G      C    G+P PT+ W 
Sbjct: 271 YECEAENSKGRDTVQGRIIVQ-AQPEWLKVISDTEADIGSNLRWGCA-AAGKPRPTVRWL 328
Query: 198 KNGQ 201
           +NG+
Sbjct: 329 RNGE 332

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 106/278 (38%), Gaps = 43/278 (15%)
Query: 89  VEFVCRVGGDPLPTILWRRDDGKM---PTGRAKILDDRSLQIENVGPQDEGLYICDVENL 145
           V   CR    P  T  W+ +  +M   P  R +++    + +     QD G+Y C   N 
Sbjct: 24  VLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDAGVYQCLASNP 83
Query: 146 VGSISLRASLTVHLLRDDFRAEPKD-TRVASGETALLECGPPKGQPEPTLHWKKNGQFID 204
           VG++  R ++       +F  E +D  +   G   +L C PP   P  +  W  N +F +
Sbjct: 84  VGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLPCNPPAHYPGLSYRWLLN-EFPN 142
Query: 205 LESSKSLDLSRRTLGWLRVRPL-------YWNVARPRANLNPRYIGRKMASLLIWNH--- 254
              +       +T G L +          Y  +A    + + + +  K A L +      
Sbjct: 143 FIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDTR 202
Query: 255 ---PRVN---------------RLSCFAEGSPLPSVFWTQ-EGSQVLMFPGNAYGHLHVT 295
              P +                 L CFA G+P+P + W + +GS    +          T
Sbjct: 203 LFAPSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRKVDGSLSPQW---------TT 253
Query: 296 QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR 333
            E TL+I  V  ED G + C A +  G  TV+  + V+
Sbjct: 254 AEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQ 291

>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT--GRAKILDDRS---L 125
           KP  ++   D TV S SV +F  +  G+P PT +W + DGK  T  G+ K+ +D+    L
Sbjct: 6   KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTK-DGKAITQGGKYKLSEDKGGFFL 64
Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTV 157
           +I      D GLY C V+N  GS+S    LT+
Sbjct: 65  EIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 74/153 (48%), Gaps = 17/153 (11%)
Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRS---- 124
           P  I +P +  V  G V  F C   GDP P+I+WR+ +GK  +G   R  +L+       
Sbjct: 9   PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRK-NGKKVSGTQSRYTVLEQPGGISI 67
Query: 125 LQIENV-GPQDEGLYICDVENLVG-SISLRASLTVHLLRDDFRAEPKDTR------VASG 176
           L+IE V   +D+  Y C  EN VG ++S  A+LT++         P  T+      +  G
Sbjct: 68  LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVG 127
Query: 177 ETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 209
            T L+ C    G P P ++W KN   +D+ + +
Sbjct: 128 HTVLMTC-KAIGNPTPNIYWIKNQTKVDMSNPR 159

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 87/196 (44%), Gaps = 35/196 (17%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR-RTLGWLRVRP 225
           +P++  V  G  A   C   +G P P++ W+KNG+ +    S+   L +   +  LR+ P
Sbjct: 14  KPQNQGVRVGGVASFYCAA-RGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEP 72
Query: 226 LYWNVA-RPRANLNPRYIGRKM---ASLLIWN-------HPRVNR--------------L 260
           +       P   +    +G  +   A+L I+         P + +              +
Sbjct: 73  VRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLM 132
Query: 261 SCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 320
           +C A G+P P+++W +  ++V M         +  ++G L+I+  ++ED G + C A + 
Sbjct: 133 TCKAIGNPTPNIYWIKNQTKVDMS-----NPRYSLKDGFLQIENSREEDQGKYECVAENS 187
Query: 321 AGSTTVRA---FLQVR 333
            G+   +A   +++VR
Sbjct: 188 MGTEHSKATNLYVKVR 203

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 74/153 (48%), Gaps = 17/153 (11%)
Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRS---- 124
           P  I +P +  V  G V  F C   GDP P+I+WR+ +GK  +G   R  +L+       
Sbjct: 7   PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRK-NGKKVSGTQSRYTVLEQPGGISI 65
Query: 125 LQIENV-GPQDEGLYICDVENLVG-SISLRASLTVHLLRDDFRAEPKDTR------VASG 176
           L+IE V   +D+  Y C  EN VG ++S  A+LT++         P  T+      +  G
Sbjct: 66  LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVG 125
Query: 177 ETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 209
            T L+ C    G P P ++W KN   +D+ + +
Sbjct: 126 HTVLMTC-KAIGNPTPNIYWIKNQTKVDMSNPR 157

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 87/196 (44%), Gaps = 35/196 (17%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR-RTLGWLRVRP 225
           +P++  V  G  A   C   +G P P++ W+KNG+ +    S+   L +   +  LR+ P
Sbjct: 12  KPQNQGVRVGGVASFYCAA-RGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEP 70
Query: 226 LYWNVAR-PRANLNPRYIGRKM---ASLLIWN-------HPRVNR--------------L 260
           +       P   +    +G  +   A+L I+         P + +              +
Sbjct: 71  VRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLM 130
Query: 261 SCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 320
           +C A G+P P+++W +  ++V M         +  ++G L+I+  ++ED G + C A + 
Sbjct: 131 TCKAIGNPTPNIYWIKNQTKVDMS-----NPRYSLKDGFLQIENSREEDQGKYECVAENS 185
Query: 321 AGSTTVRA---FLQVR 333
            G+   +A   +++VR
Sbjct: 186 MGTEHSKATNLYVKVR 201

>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma Translocation Protein 1 Length = 218

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 64/166 (38%), Gaps = 26/166 (15%)
Query: 78  PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGL 137
           P    VL+G  V+  CR  G P     W + + ++P G    L   ++ +     +D G 
Sbjct: 25  PESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHV-----KDAGF 79
Query: 138 YICDV-ENLVGSISLRASLTVHLLRDDFR--------------AEPKDTRVASGETALLE 182
           Y+C V  N     S  + L V  + + F+               EP   ++  G T +L+
Sbjct: 80  YVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQ 139
Query: 183 CGPPKGQPEPTLHWKKNGQFIDLESSK-----SLDLSRRTLGWLRV 223
           C    G P P   W KN   +  E+ K      +DL  +   W  V
Sbjct: 140 C-VAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHV 184

>pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 67  EALIKPFP---ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR 123
           E   KP+P   + +  D   L G  V   C   G+P+P I WR+    MP+         
Sbjct: 106 ERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGA 165
Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
            L+I N+  +DEG+Y C+ EN+ G    +A + V 
Sbjct: 166 VLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 86  GSVVEFVCRVGGDPLPTILW----RRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICD 141
           G  V+FVCR  GDP P ILW    +        GR  +  D +L++     QD G Y+C 
Sbjct: 400 GHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCI 459
Query: 142 VENLVGSISLRASLTV 157
             N  G+ S+ A L V
Sbjct: 460 AANAGGNDSMPAHLHV 475

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 262 CFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 321
           C A+G P P++ W      ++    N  G L V  +GTL ++  Q +D G ++C A +  
Sbjct: 407 CRADGDPPPAILWLSPRKHLVSAKSN--GRLTVFPDGTLEVRYAQVQDNGTYLCIAANAG 464
Query: 322 GSTTVRAFLQVR 333
           G+ ++ A L VR
Sbjct: 465 GNDSMPAHLHVR 476

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 6/136 (4%)
Query: 80  DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL--DDRSLQIENVGPQDEGL 137
           +AT   G  + F CR  G P P I W R+   +      IL   +  L + N+   D G 
Sbjct: 13  NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGP 72
Query: 138 YICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWK 197
           Y+C   N  G    +A L V  ++        +T   +G+  L+ C   +G+P P + WK
Sbjct: 73  YVCRATNKAGEDEKQAFLQV-FVQPHIIQLKNETTYENGQVTLV-C-DAEGEPIPEITWK 129
Query: 198 KN-GQFIDLESSKSLD 212
           +    F   E  KSLD
Sbjct: 130 RAVDGFTFTEGDKSLD 145

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 70/178 (39%), Gaps = 24/178 (13%)
Query: 176 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRA 235
           GE     C    G PEP + W +NG+ I+ E+ K +     T   L VR +  +   P  
Sbjct: 19  GEEMTFSC-RASGSPEPAISWFRNGKLIE-ENEKYILKGSNT--ELTVRNIINSDGGPYV 74
Query: 236 NLNPRYIGR--KMASLLIWNHPRVNRLS-------------CFAEGSPLPSVFWTQEGSQ 280
                  G   K A L ++  P + +L              C AEG P+P + W +    
Sbjct: 75  CRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDG 134
Query: 281 VLMFPGNAY--GHLHVT-QEG--TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR 333
                G+    G + V  Q G  +L I+ V+  D+G + C A S  G      +L + 
Sbjct: 135 FTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192

>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homolog 2 Length = 100

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319
           L C A G PLP + W +EG     FPG       + ++GTL+I+ ++  D G + C A S
Sbjct: 28  LKCKATGDPLPVISWLKEG---FTFPGRDP-RATIQEQGTLQIKNLRISDTGTYTCVATS 83
Query: 320 VAGSTTVRAFLQVRE 334
            +G T+  A L V E
Sbjct: 84  SSGETSWSAVLDVTE 98

>pdb|1BPV|A Chain A, Titin Module A71 From Human Cardiac Muscle, Nmr, 50 Structures Length = 112

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTG-WVVAAH-RITST 469
           PP  PV LN TR +VTL W +PE  GG    +  Y VE    DL  G W+ A    I   
Sbjct: 13  PPGKPVPLNITRHTVTLKWAKPEYTGG--FKITSYIVE--KRDLPNGRWLKANFSNILEN 68
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP 502
             TVS L  D +Y F V A+N+ G  I  P  P
Sbjct: 69  EFTVSGLTEDAAYEFRVIAKNAAG-AISPPSEP 100

>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 82  TVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDR-SLQIENVGPQDEG 136
            V + + V+F C  GG+P+PT+ W ++  +       G  K+ +   SL +E+V P D+G
Sbjct: 30  AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 89
Query: 137 LYICDVENLVGSISLRASLTV 157
            Y C VEN  GSI+    L V
Sbjct: 90  NYTCVVENEYGSINHTYHLDV 110

>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 83  VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDR-SLQIENVGPQDEGL 137
           V + + V+F C  GG+P+PT+ W ++  +       G  K+ +   SL +E+V P D+G 
Sbjct: 23  VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 82
Query: 138 YICDVENLVGSISLRASLTV 157
           Y C VEN  GSI+    L V
Sbjct: 83  YTCVVENEYGSINHTYHLDV 102

>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 83  VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDR-SLQIENVGPQDEGL 137
           V + + V+F C  GG+P+PT+ W ++  +       G  K+ +   SL +E+V P D+G 
Sbjct: 22  VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 81
Query: 138 YICDVENLVGSISLRASLTV 157
           Y C VEN  GSI+    L V
Sbjct: 82  YTCVVENEYGSINHTYHLDV 101

>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 83  VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDR-SLQIENVGPQDEGL 137
           V + + V+F C  GG+P+PT+ W ++  +       G  K+ +   SL +E+V P D+G 
Sbjct: 23  VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 82
Query: 138 YICDVENLVGSISLRASLTV 157
           Y C VEN  GSI+    L V
Sbjct: 83  YTCVVENEYGSINHTYHLDV 102

>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 83  VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDR-SLQIENVGPQDEGL 137
           V + + V+F C  GG+P+PT+ W ++  +       G  K+ +   SL +E+V P D+G 
Sbjct: 23  VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 82
Query: 138 YICDVENLVGSISLRASLTV 157
           Y C VEN  GSI+    L V
Sbjct: 83  YTCVVENEYGSINHTYHLDV 102

>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 83  VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDR-SLQIENVGPQDEGL 137
           V + + V+F C  GG+P+PT+ W ++  +       G  K+ +   SL +E+V P D+G 
Sbjct: 21  VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 80
Query: 138 YICDVENLVGSISLRASLTV 157
           Y C VEN  GSI+    L V
Sbjct: 81  YTCVVENEYGSINHTYHLDV 100

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-----RAKILDDRSLQ 126
           P  +  P+D  V  G   E  CR     L ++ W   +G + T      R  +L D +L 
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCR-ASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLN 400
Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTV 157
             NV  QD G+Y C V N VG+ +  A+L V
Sbjct: 401 FTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431

>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 87  SVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDR-SLQIENVGPQDEGLYICD 141
           + V+F C  GG+P+PT+ W ++  +       G  K+ +   SL +E+V P D+G Y C 
Sbjct: 35  NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 94
Query: 142 VENLVGSISLRASLTV 157
           VEN  GSI+    L V
Sbjct: 95  VENEYGSINHTYHLDV 110

>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 70  IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD-----DRS 124
           +KP+      D  V+ GS   F C+V G P P ++W +DD  +   R   +D     + S
Sbjct: 40  VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS 99
Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVHLL 160
           L I  V   D+  Y C   N +G  +  A L V  +
Sbjct: 100 LTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM 135

>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 70  IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD-----DRS 124
           +KP+      D  V+ GS   F C+V G P P ++W +DD  +   R   +D     + S
Sbjct: 40  VKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS 99
Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVHLL 160
           L I  V   D+  Y C   N +G  +  A L V  +
Sbjct: 100 LTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM 135

>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homo1 Length = 118

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319
           LSC A GSP+P++ W ++G  VL+   ++   +   + G L+I+  +  D G + C A +
Sbjct: 28  LSCVATGSPVPTILWRKDG--VLVSTQDS--RIKQLENGVLQIRYAKLGDTGRYTCIAST 83
Query: 320 VAGSTTVRAFLQVREFCV 337
            +G  T  A+++V+EF V
Sbjct: 84  PSGEATWSAYIEVQEFGV 101

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 80  DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDD--RSLQIENVGPQDEGL 137
           + T   G  +E  C   G+P P I+W +D+  +      +L D  R+L I  V  +DEGL
Sbjct: 675 NQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGL 734
Query: 138 YICDVENLVGSISLRASLTVH 158
           Y C   +++G   + A   + 
Sbjct: 735 YTCQACSVLGCAKVEAFFIIE 755

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT--LRIQGVQKEDAGFFVCS 316
            +SC A G+P P + W ++   ++   G       V ++G   L I+ V+KED G + C 
Sbjct: 685 EVSCTASGNPPPQIMWFKDNETLVEDSG------IVLKDGNRNLTIRRVRKEDEGLYTCQ 738
Query: 317 ALSVAGSTTVRAFLQVR 333
           A SV G   V AF  + 
Sbjct: 739 ACSVLGCAKVEAFFIIE 755

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-----RAKILDDRSLQ 126
           P  +  P+D  V  G   E  CR G   + ++ W   +G + T      R  +L D +L 
Sbjct: 313 PVIVEPPTDLNVTEGMAAELKCRTGTS-MTSVNWLTPNGTLMTHGSYRVRISVLHDGTLN 371
Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTV 157
             NV  QD G Y C V N  G+ +  A+L V
Sbjct: 372 FTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402

>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The A-Band Of Titin Length = 197

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           PGPP    +   T+ SVTL W  P   GG  + +  Y VE   S  +  +   A     T
Sbjct: 6   PGPPQDLKVKEVTKTSVTLTWDPPLLDGG--SKIKNYIVEKRES-TRKAYSTVATNCHKT 62
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPS 498
           S  V  L+   SY F V AEN +G+G+P+
Sbjct: 63  SWKVDQLQEGCSYYFRVLAENEYGIGLPA 91

>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From Myosin Light Chain Kinase, Smooth Muscle Length = 99

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 80  DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRS-LQIENVGPQDEGLY 138
           D  V+ G      C V G P+P I W  +   +   R+      + L I++  P+D G Y
Sbjct: 20  DCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTY 79
Query: 139 ICDVENLVGSISLRASLTVH 158
            C  EN +G +S  A +TVH
Sbjct: 80  TCLAENALGQVSCSAWVTVH 99

>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 70  IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDD--RSLQI 127
           + P       + T   G  +E  C   G+P P I+W +D+  +      +L D  R+L I
Sbjct: 9   VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTI 68
Query: 128 ENVGPQDEGLYICDVENLVGSISLRA 153
             V  +DEGLY C   +++G   + A
Sbjct: 69  RRVRKEDEGLYTCQACSVLGCAKVEA 94

>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT--LRIQGVQKEDAGFFVCSA 317
           +SC A G+P P + W ++   ++   G       V ++G   L I+ V+KED G + C A
Sbjct: 30  VSCTASGNPPPQIMWFKDNETLVEDSGI------VLKDGNRNLTIRRVRKEDEGLYTCQA 83
Query: 318 LSVAGSTTVRAFL 330
            SV G   V AF 
Sbjct: 84  CSVLGCAKVEAFF 96

>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2 Length = 105

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 83  VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDR-SLQIENVGPQDEGL 137
           V + + V+F C  GG+P+PT+ W ++  +       G  K+ +   SL +E+V P D+G 
Sbjct: 25  VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 84
Query: 138 YICDVENLVGSISLRASLTV 157
           Y C VEN  GSI+    L V
Sbjct: 85  YTCVVENEYGSINHTYHLDV 104

>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast Growth Factor Length = 104

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 83  VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDR-SLQIENVGPQDEGL 137
           V + + V+F C  GG+P+PT+ W ++  +       G  K+ +   SL +E+V P D+G 
Sbjct: 24  VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 83
Query: 138 YICDVENLVGSISLRASLTV 157
           Y C VEN  GSI+    L V
Sbjct: 84  YTCVVENEYGSINHTYHLDV 103

>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain Length = 100

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 83  VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDR-SLQIENVGPQDEGL 137
           V + + V+F C  GG+P+PT+ W ++  +       G  K+ +   SL +E+V P D+G 
Sbjct: 20  VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 79
Query: 138 YICDVENLVGSIS 150
           Y C VEN  GSI+
Sbjct: 80  YTCVVENEYGSIN 92

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 405 DSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAH 464
           D    P PP    + + +R SV L W EP   GG  + +  Y VE  ++  +    V   
Sbjct: 194 DVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGG--SKITNYIVEKCATTAERWLRVGQA 251
Query: 465 RITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
           R   T  TV +L   TSY F V AEN  GL  PS  S  T T
Sbjct: 252 R--ETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTIT 291

>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex Length = 230

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 78  PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-----PTG--RAKIL--------DD 122
           P++A+ + G  VEFVC+V  D  P I W +   K      P G    K+L        + 
Sbjct: 124 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNA 183
Query: 123 RSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
             L + NV   D G YIC V N +G  +  A LTV
Sbjct: 184 EVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 218

>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor Receptor 2 In Complex With Fgf1 Length = 216

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 83  VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDR-SLQIENVGPQDEGL 137
           V + + V+F C  GG+P PT  W ++  +       G  K+ +   SL  E+V P D+G 
Sbjct: 23  VPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGN 82
Query: 138 YICDVENLVGSISLRASLTV 157
           Y C VEN  GSI+    L V
Sbjct: 83  YTCVVENEYGSINHTYHLDV 102

>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT-GRAKILDDR---SLQIENV 130
           +++P   TV  G    F C   G+P+PT+ W R    + T  R ++   +   + +I +V
Sbjct: 18  LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSV 77
Query: 131 GPQDEGLYICDVENLVGSISLRASLTVH 158
              DEG Y   VEN  G      +LT+ 
Sbjct: 78  QASDEGNYSVVVENSEGKQEAEFTLTIQ 105

>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT-GRAKILDDR---SLQIENV 130
           +++P   TV  G    F C   G+P+PT+ W R    + T  R ++   +   + +I +V
Sbjct: 12  LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSV 71
Query: 131 GPQDEGLYICDVENLVGSISLRASLTVH 158
              DEG Y   VEN  G      +LT+ 
Sbjct: 72  QASDEGNYSVVVENSEGKQEAEFTLTIQ 99

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 8/127 (6%)
Query: 83  VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR------SLQIENVGPQDEG 136
           ++    +  +C   G P P+  W +        +A +L+DR      +L I++   +D G
Sbjct: 224 LMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSG 283
Query: 137 LYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHW 196
            Y+C V N VG  S+   LTV       + +P    V  G  A+  C    G P  T+ W
Sbjct: 284 KYLCVVNNSVGGESVETVLTVTAPLSA-KIDPPTQTVDFGRPAVFTC-QYTGNPIKTVSW 341
Query: 197 KKNGQFI 203
            K+G+ I
Sbjct: 342 MKDGKAI 348

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 120/314 (38%), Gaps = 67/314 (21%)
Query: 42  SRSIFGSVLG----ARGALSDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGG 97
           +R+ FGS++      R  ++      + KE +I+        ++ V+   +  FV     
Sbjct: 84  ARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIR-------GNSAVIKCLIPSFV----A 132
Query: 98  DPLPTILWRRDD------GKMPTGRAKILDDRSLQIENVGPQD-EGLYICDVEN-LVGSI 149
           D +  + W  D+      G    G+  +L    L I  VGP+D    Y C  ++ L G  
Sbjct: 133 DFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGET 192
Query: 150 SLRASLTVHLLRDDFRAEP--------KDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 201
            L A+    ++ +   +          K   +    T  L C P +G P P+  W K   
Sbjct: 193 RLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLC-PAQGFPAPSFRWYK--- 248
Query: 202 FIDLESSKSL----DLSRRTLGWLRVR-PLYWNVARPRANLNPRYIGRKMASLLIWNHP- 255
           FI+  + K      D  ++  G L ++  +  +  +    +N    G  + ++L    P 
Sbjct: 249 FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPL 308
Query: 256 --------------RVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLR 301
                         R    +C   G+P+ +V W ++G         A GH     E  LR
Sbjct: 309 SAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDG--------KAIGH----SESVLR 356
Query: 302 IQGVQKEDAGFFVC 315
           I+ V+KED G + C
Sbjct: 357 IESVKKEDKGMYQC 370

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 8/127 (6%)
Query: 83  VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR------SLQIENVGPQDEG 136
           ++    +  +C   G P P+  W +        +A +L+DR      +L I++   +D G
Sbjct: 230 LMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSG 289
Query: 137 LYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHW 196
            Y+C V N VG  S+   LTV       + +P    V  G  A+  C    G P  T+ W
Sbjct: 290 KYLCVVNNSVGGESVETVLTVTAPLSA-KIDPPTQTVDFGRPAVFTC-QYTGNPIKTVSW 347
Query: 197 KKNGQFI 203
            K+G+ I
Sbjct: 348 MKDGKAI 354

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 120/314 (38%), Gaps = 67/314 (21%)
Query: 42  SRSIFGSVLG----ARGALSDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGG 97
           +R+ FGS++      R  ++      + KE +I+        ++ V+   +  FV     
Sbjct: 90  ARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIR-------GNSAVIKCLIPSFV----A 138
Query: 98  DPLPTILWRRDD------GKMPTGRAKILDDRSLQIENVGPQD-EGLYICDVEN-LVGSI 149
           D +  + W  D+      G    G+  +L    L I  VGP+D    Y C  ++ L G  
Sbjct: 139 DFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGET 198
Query: 150 SLRASLTVHLLRDDFRAEP--------KDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 201
            L A+    ++ +   +          K   +    T  L C P +G P P+  W K   
Sbjct: 199 RLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLC-PAQGFPAPSFRWYK--- 254
Query: 202 FIDLESSKSL----DLSRRTLGWLRVR-PLYWNVARPRANLNPRYIGRKMASLLIWNHP- 255
           FI+  + K      D  ++  G L ++  +  +  +    +N    G  + ++L    P 
Sbjct: 255 FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPL 314
Query: 256 --------------RVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLR 301
                         R    +C   G+P+ +V W ++G         A GH     E  LR
Sbjct: 315 SAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDG--------KAIGH----SESVLR 362
Query: 302 IQGVQKEDAGFFVC 315
           I+ V+KED G + C
Sbjct: 363 IESVKKEDKGMYQC 376

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 112/311 (36%), Gaps = 57/311 (18%)
Query: 72  PFPISEPSDATVLSGSV-VEFVCRVGGDPLPTILWRRDD----GKMPTGRAKILDDRSLQ 126
           P  + EP++    S S   E  C+  G+P+P I+W R D    G +P G  +I  D  L 
Sbjct: 4   PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP-GLRQISSDGKLV 62
Query: 127 IENVGPQD------EGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETAL 180
                 +D        +Y C   N  GSI  R      ++   + +E  +  V  G + +
Sbjct: 63  FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVIQSYESEADNEYVIRGNSVV 122
Query: 181 LECGPPKGQPE----------------PTLHWKKNGQFIDLES---------------SK 209
           ++C  P    +                P    + +G+++ L S               S 
Sbjct: 123 MKCEIPSYVADFVFVDLWLDSEGRNYYPNNAAETDGKYLVLPSGELHIREVGPEDGYKSY 182
Query: 210 SLDLSRRTLGWLRVRPLYWN--VARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGS 267
                 R  G  R+        +  P  ++ P+   +     +         L C A+  
Sbjct: 183 QCRTKHRLTGETRLSATKGRLVITEPVGSVRPKVNPQDKHQFIDVELASSYSLLCMAQSY 242
Query: 268 PLPSVFWTQ--EGS---QVLMFPGNAYGHLHVTQ-EGTLRIQGVQKEDAGFFVCSALSVA 321
           P PS  W +  EG+   Q ++       +  V Q  GTL I+    ED+G ++C   +  
Sbjct: 243 PTPSFRWYKFIEGTTRKQAVVL------NDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSV 296
Query: 322 GSTTVRAFLQV 332
           G  +V   L V
Sbjct: 297 GGESVETVLTV 307

>pdb|1X5L|A Chain A, Solution Structure Of The Second Fn3 Domain Of Eph Receptor A8 Protein Length = 111

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 413 PAAPVILNTTRG---SVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P+  V++   R    SV+L W EPE   G    ++ Y ++Y+  D +         +T T
Sbjct: 11  PSQVVVIRQERAGQTSVSLLWQEPEQPNG---IILEYEIKYYEKDKEMQSYSTLKAVT-T 66
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLG 495
             TVS LKP T Y+F VRA  S G G
Sbjct: 67  RATVSGLKPGTRYVFQVRARTSAGCG 92

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 22/175 (12%)
Query: 177 ETALLECGPPKGQPEPTLHWKKNGQFIDL-ESSKSLDLSRRTLGWLRVRPLYWNVARPRA 235
           E A   C   +  P+P + W +N   I L ++  S+  + + L  L V      +    A
Sbjct: 23  EVATFMCAV-ESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTA 81
Query: 236 NLNPRYIGRKMASLLIWNHPRVNR--------------LSCFAEGSPLPSVFWTQEGSQV 281
           N           +L +   P++ R              L C   G+P PSV W +  S +
Sbjct: 82  NNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSAL 141
Query: 282 LMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF-LQVREF 335
                     + V + G+LRI  VQKEDAG + C A +  G+   +   L+V  F
Sbjct: 142 -----RENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVF 191

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 83  VLSGSVVEFVCRVGGDPLPTILWRRDD----GKMPTGRAKILDDR-SLQIENVGPQDEGL 137
           V + + V F C   G+P P+I W ++     G+   G  K+   + SL +E+V P D G 
Sbjct: 135 VPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGN 194
Query: 138 YICDVENLVGSISLRASLTV 157
           Y C VEN  GSI    +L V
Sbjct: 195 YTCVVENKFGSIRQTYTLDV 214

>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 82  TVLSGSVVEFVCRVGGDPLPTILWRRDD----GKMPTGRAKILDDR-SLQIENVGPQDEG 136
            V + + V F C   G+P P+I W ++     G+   G  K+   + SL +E+V P D G
Sbjct: 26  AVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRG 85
Query: 137 LYICDVENLVGSISLRASLTV 157
            Y C VEN  GSI    +L V
Sbjct: 86  NYTCVVENKFGSIRQTYTLDV 106

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 15/137 (10%)
Query: 83  VLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDR----SLQIENVGPQDEGL 137
           V +   V+F C   G P PT+ W ++  +  P  R      R    S+ +++V P D+G 
Sbjct: 29  VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 88
Query: 138 YICDVENLVGSISLRASLTVHLLRDDFR-----AEPKDTRVASGETALLECGPPKGQPEP 192
           Y C VEN  GSI+    L V + R   R       P +  VA G      C      P+P
Sbjct: 89  YTCIVENEYGSINHTYQLDV-VERSPHRPILQAGLPANKTVALGSNVEFMCK-VYSDPQP 146
Query: 193 TLHWKKNGQFIDLESSK 209
            + W K+   I++  SK
Sbjct: 147 HIQWLKH---IEVNGSK 160

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 15/137 (10%)
Query: 83  VLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDR----SLQIENVGPQDEGL 137
           V +   V+F C   G P PT+ W ++  +  P  R      R    S+ +++V P D+G 
Sbjct: 28  VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 87
Query: 138 YICDVENLVGSISLRASLTVHLLRDDFR-----AEPKDTRVASGETALLECGPPKGQPEP 192
           Y C VEN  GSI+    L V + R   R       P +  VA G      C      P+P
Sbjct: 88  YTCIVENEYGSINHTYQLDV-VERSPHRPILQAGLPANKTVALGSNVEFMCK-VYSDPQP 145
Query: 193 TLHWKKNGQFIDLESSK 209
            + W K+   I++  SK
Sbjct: 146 HIQWLKH---IEVNGSK 159

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-----RAKILDDRSLQ 126
           PF +  P D  +  G + E  CR    P+ ++ W   +G + +      R  +L+D +L 
Sbjct: 353 PFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLN 410
Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTV 157
             +V   D G+Y C V N+ G+ +  A L V
Sbjct: 411 FSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 53/122 (43%), Gaps = 18/122 (14%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWV-VAAHRITS 468
           P PP  P+I N    +V L W  P   GG +  V  YT+E   + +   W   A  R T 
Sbjct: 10  PEPPRFPIIENILDEAVILSWKPPALDGGSL--VTNYTIEKREA-MGGSWSPCAKSRYTY 66
Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIP-SPVSPITRTLGLNSLVPQHLLDEARARLGT 527
           T  T+  L+    Y F + AEN HG   P  P +P+        L+P    DE + R G 
Sbjct: 67  T--TIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPV--------LIPG---DERKRRRGY 113
Query: 528 KV 529
            V
Sbjct: 114 DV 115

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 15/137 (10%)
Query: 83  VLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDR----SLQIENVGPQDEGL 137
           V +   V+F C   G P PT+ W ++  +  P  R      R    S+ +++V P D+G 
Sbjct: 28  VPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 87
Query: 138 YICDVENLVGSISLRASLTVHLLRDDFR-----AEPKDTRVASGETALLECGPPKGQPEP 192
           Y C VEN  GSI+    L V + R   R       P +  VA G      C      P+P
Sbjct: 88  YTCIVENEYGSINHTYQLDV-VERSPHRPILQAGLPANKTVALGSNVEFMCK-VYSDPQP 145
Query: 193 TLHWKKNGQFIDLESSK 209
            + W K+   I++  SK
Sbjct: 146 HIQWLKH---IEVNGSK 159

>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine- Rich Repeat-Containing Protein 4 Length = 103

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-----RAKILDDRSLQ 126
           PF +  P D  +  G + E  CR    P+ ++ W   +G + +      R  +L+D +L 
Sbjct: 8   PFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLN 65
Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTV 157
             +V   D G+Y C V N+ G+ +  A L V
Sbjct: 66  FSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 96

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 70  IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKIL----DDRS 124
            +P  +  P D TV  G +    C+V G P P + W+ D   + P    K+L       S
Sbjct: 8   FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHS 67
Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
           L IE V  +D G+Y C   N  G  S    L V
Sbjct: 68  LIIEPVTSRDAGIYTCIATNRAGQNSFSLELVV 100

>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 49  VLGARGALSDDQWKLIAKEALIKP-FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRR 107
           V G + ++S ++   +  + L  P  PI  P D++ LSG+ +   C    +P P   WR 
Sbjct: 536 VCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRI 595
Query: 108 DDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVG--SISLRASLTV 157
           +   +P    ++     L I  + P + G Y C V NL    + S+  S+TV
Sbjct: 596 N--GIPQQHTQV-----LFIAKITPNNNGTYACFVSNLATGRNNSIVKSITV 640

>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin Domains Of The Neural Cell Adhesion Molecule (Ncam) Length = 191

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 78  PSDATVLSGSVVEFVCRVGGDPL-PTILWRRDDG-KMPTGRAKIL------DDRSLQIEN 129
           PS   +  G    F+C+V GD     I W   +G K+   + +I       D  +L I N
Sbjct: 9   PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYN 68
Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVHLLRD-DFRAEPKDTRVASGETALLECGPPKG 188
               D G+Y C V    G+ S  A++ V + +   F+  P       GE A++ C     
Sbjct: 69  ANIDDAGIYKCVVTAEDGTQS-EATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSS 127
Query: 189 QPEPTLHWKKNGQFIDLE 206
            P PT+ WK  G+ + L+
Sbjct: 128 LP-PTIIWKHKGRDVILK 144

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRA-KILDDR---SLQ 126
           KP P+        L G+ V   C + G P   + W +D  ++ +G+  KI+ +    S+ 
Sbjct: 198 KPHPVE------TLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIH 251
Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTV 157
           I NV   D G Y C   N VGS +   S+T+
Sbjct: 252 ILNVDSADIGEYQCKASNDVGSYTCVGSITL 282

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRA-KILDDR---SLQ 126
           KP P+        L G+ V   C + G P   + W +D  ++ +G+  KI+ +    S+ 
Sbjct: 198 KPHPVE------TLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIH 251
Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTV 157
           I NV   D G Y C   N VGS +   S+T+
Sbjct: 252 ILNVDSADIGEYQCKASNDVGSYTCVGSITL 282

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 19/131 (14%)
Query: 86  GSVVEFVCRVGGDPLPTILWRRDDGKMPT---GRAKILDDRSLQIENVGPQDEGLYICD- 141
           G   E VCRV   P P + W   + ++ T    R  +L + +LQI N+   DEG+Y C+ 
Sbjct: 113 GEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEG 172
Query: 142 -VENLVGSISLRASLT-------VHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPT 193
            VE   G I  R  +        + + +  F A  +      GE     C    G PEP 
Sbjct: 173 RVEAR-GEIDFRDIIVIVNVPPAISMPQKSFNATAE-----RGEEMTFSC-RASGSPEPA 225
Query: 194 LHWKKNGQFID 204
           + W +NG+ I+
Sbjct: 226 ISWFRNGKLIE 236

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	633
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-54
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-53
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	8e-52
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-41
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-17
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-04
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-53
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	7e-29
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	5e-19
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-14
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-53
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-51
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-30
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	8e-11
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	8e-53
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-47
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-46
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-46
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-41
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-23
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	6e-52
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	5e-19
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	7e-17
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	7e-12
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-51
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-40
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	4e-21
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-19
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-51
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-31
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-25
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	8e-18
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	7e-13
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-50
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	7e-39
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	5e-22
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-50
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	5e-34
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-18
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-16
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-49
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	4e-26
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	9e-20
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-12
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-49
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	6e-33
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-19
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	7e-49
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-39
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	6e-35
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-20
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-47
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-31
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	6e-15
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-46
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	7e-46
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	5e-30
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-14
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-43
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	5e-35
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-21
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-43
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-40
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-39
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-37
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-35
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-26
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	9e-15
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	5e-43
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-26
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	9e-18
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	4e-04
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	5e-43
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	3e-16
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	7e-16
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	9e-41
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	4e-19
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	5e-19
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-14
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	9e-40
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-36
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-31
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	7e-18
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-39
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-15
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-14
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-39
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-34
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	9e-29
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	8e-28
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	8e-25
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	8e-22
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	9e-18
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-08
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-05
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-36
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	8e-19
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	3e-18
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-15
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-36
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-20
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	6e-19
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	8e-14
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	9e-36
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-20
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-17
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	5e-13
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-35
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-21
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-12
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	6e-12
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-35
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-32
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-30
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-04
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-34
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-24
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	8e-17
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-16
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	4e-05
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	4e-34
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-17
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	6e-15
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-14
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	6e-34
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-15
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-05
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	7e-34
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	3e-21
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	5e-20
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	5e-18
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	6e-33
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	4e-22
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-21
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-13
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-32
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	8e-24
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-23
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-14
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-32
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-20
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-18
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-13
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	4e-05
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-32
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-17
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-17
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-16
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	4e-05
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-32
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-16
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	4e-16
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-10
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-06
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-32
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-18
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-17
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-14
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-32
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	9e-23
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-22
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-21
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	3e-05
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	4e-32
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	7e-23
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-21
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	4e-20
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	1e-31
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	2e-19
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	4e-13
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	3e-07
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	2e-06
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	9e-05
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-31
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	6e-13
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	8e-11
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	7e-07
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-31
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	6e-17
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-16
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	9e-16
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	7e-31
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-24
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	7e-21
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	7e-18
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	4e-05
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-30
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-23
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-19
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-13
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-30
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-25
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	5e-20
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	5e-20
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-04
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	4e-30
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	3e-23
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	5e-23
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	7e-13
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	5e-30
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	3e-21
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	6e-20
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	3e-15
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-29
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	9e-21
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-19
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-08
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	1e-29
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	4e-29
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	6e-19
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	6e-29
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-23
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	7e-22
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	9e-17
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	7e-29
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	7e-29
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	6e-13
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-04
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-04
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	2e-28
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	7e-28
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	9e-17
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-11
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-10
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-27
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-26
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	6e-23
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	4e-12
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	6e-27
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	1e-26
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-25
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	3e-18
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	3e-16
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-12
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	2e-25
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	2e-25
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-25
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-14
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	6e-14
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	5e-06
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	7e-06
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	4e-25
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	7e-11
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-09
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-08
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	5e-25
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	5e-12
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-06
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	6e-04
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	5e-25
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	6e-25
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	6e-22
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	7e-25
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	9e-25
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	3e-13
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	4e-06
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	3e-05
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	4e-24
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-16
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-07
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	4e-06
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	6e-24
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	2e-12
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	4e-06
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	8e-24
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	6e-12
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-11
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	9e-24
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-23
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	6e-13
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	3e-06
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	3e-05
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	2e-23
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	3e-23
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	4e-13
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	1e-08
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	4e-23
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	3e-11
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-06
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	5e-05
2crz_A	110	Fibronectin type-III domain containing protein 3A;	4e-23
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	6e-23
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	8e-23
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-08
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-22
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	7e-15
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	6e-07
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-06
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	1e-22
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	2e-22
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	8e-19
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-22
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-12
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	5e-05
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	5e-04
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-22
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-21
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-18
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	6e-11
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	5e-22
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	4e-07
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	9e-05
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	6e-22
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	7e-22
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	6e-17
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-21
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-21
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	4e-16
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	4e-12
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	4e-07
2crm_A	120	Fibronectin type-III domain containing protein 3A;	1e-21
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-21
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-11
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-08
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	7e-06
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	2e-21
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	3e-21
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-21
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	7e-20
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	8e-14
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-10
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-07
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	5e-21
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	6e-21
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	3e-10
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	3e-06
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	2e-04
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	7e-21
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	8e-21
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	9e-11
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	1e-06
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	3e-06
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-20
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-19
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-18
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-04
2ens_A	96	Advanced glycosylation END product-specific recept	1e-20
2ens_A	96	Advanced glycosylation END product-specific recept	1e-11
2ens_A	96	Advanced glycosylation END product-specific recept	7e-11
2ens_A	96	Advanced glycosylation END product-specific recept	6e-04
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-20
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	4e-15
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	8e-12
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-10
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-20
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	3e-12
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-20
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	7e-18
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-14
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	4e-14
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	2e-20
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	2e-16
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	2e-20
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	4e-20
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	4e-12
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	7e-08
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-06
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	4e-20
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	6e-14
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	3e-10
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	4e-10
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	4e-20
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	5e-20
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	5e-20
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	1e-14
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	5e-06
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-05
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	6e-20
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	5e-18
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	6e-14
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	6e-20
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	3e-10
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-09
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	3e-07
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	7e-20
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	3e-05
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	8e-20
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	6e-14
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-10
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	9e-07
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	2e-19
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-19
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	3e-10
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-05
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	5e-05
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-19
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-08
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-08
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	4e-07
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-19
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	3e-11
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-05
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-11
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-19
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	6e-11
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-10
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-07
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	4e-19
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	1e-13
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	2e-06
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	3e-05
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	6e-19
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	2e-11
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	4e-08
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	8e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-11
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	1e-18
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	3e-11
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	1e-04
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-18
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	8e-15
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	7e-11
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	3e-18
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	4e-11
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-06
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-06
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	3e-18
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	5e-10
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-06
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-05
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	4e-18
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	4e-18
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	6e-08
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	8e-08
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	4e-18
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	7e-18
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	7e-12
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-04
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	8e-18
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	5e-12
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	1e-17
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-17
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	7e-11
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	4e-06
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	4e-04
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	1e-17
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	2e-06
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	7e-06
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	1e-17
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	1e-17
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	3e-17
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	7e-14
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	3e-17
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	2e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-04
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	4e-17
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	6e-09
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	3e-08
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	1e-05
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	4e-17
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-08
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	4e-05
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	4e-17
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-15
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-08
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	6e-04
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	4e-17
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	1e-06
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	9e-05
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	5e-17
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	5e-17
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	6e-15
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	2e-11
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	6e-17
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	1e-16
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	1e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-04
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	3e-16
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	1e-06
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-06
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-04
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	3e-16
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	4e-16
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	3e-13
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-09
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	4e-16
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-09
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	4e-05
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	5e-16
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	1e-07
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	5e-07
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	4e-04
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	5e-16
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	2e-08
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	6e-16
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	6e-16
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	7e-16
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	8e-16
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	8e-16
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	9e-16
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	1e-15
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	6e-12
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	1e-15
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	2e-15
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-15
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	3e-15
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-12
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	2e-15
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-15
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	7e-07
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-04
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	3e-15
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	2e-12
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	3e-11
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	3e-15
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	4e-13
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-10
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	5e-08
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	4e-15
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	7e-12
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	4e-15
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	4e-07
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	5e-15
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	7e-15
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	1e-13
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	2e-11
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	4e-11
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	1e-05
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	6e-15
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	7e-15
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-08
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-04
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	8e-15
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	1e-05
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	1e-14
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-06
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	1e-14
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	2e-14
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	5e-14
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	9e-13
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	1e-14
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-14
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	2e-08
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-06
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	2e-04
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	2e-14
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	2e-14
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	3e-13
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	4e-13
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-14
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	9e-07
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-04
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-14
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-06
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	5e-14
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	8e-09
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	6e-04
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	7e-14
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	9e-13
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	4e-05
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	7e-14
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	8e-07
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-06
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	8e-14
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	1e-08
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	4e-08
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	9e-14
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	6e-12
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	2e-13
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	5e-07
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-04
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	2e-13
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	1e-06
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-04
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	2e-13
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	2e-13
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-13
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	5e-06
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	3e-04
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	3e-13
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	3e-13
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	4e-13
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	5e-07
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	4e-13
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	7e-13
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	4e-06
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	7e-13
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	2e-09
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	6e-04
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	8e-13
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	3e-07
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	1e-04
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	1e-12
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	1e-07
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	5e-04
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	1e-12
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	1e-12
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	1e-12
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	9e-07
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	2e-12
2w1n_A	238	O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrol	3e-12
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	3e-12
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	4e-07
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	3e-12
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	3e-12
2h41_A	95	Fibronectin; beta sandwich, cell adhesion, structu	3e-12
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	3e-12
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	4e-12
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	4e-12
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	4e-12
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	3e-09
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	4e-06
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	6e-12
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	6e-12
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	7e-12
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-11
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	3e-10
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	1e-05
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	7e-12
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	1e-11
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	1e-11
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	2e-06
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	1e-11
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	2e-11
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	3e-06
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-11
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-09
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	6e-06
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	2e-11
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	3e-11
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	3e-11
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	6e-07
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	5e-06
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	4e-11
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	1e-10
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	8e-05
3mpc_A	103	FN3-like protein; fibronectin, FN(III), unknown fu	1e-10
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	1e-10
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	3e-04
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	1e-10
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	3e-07
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	2e-10
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	8e-10
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	1e-07
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	6e-06
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	2e-10
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	2e-09
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	2e-10
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-10
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	5e-09
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	4e-05
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	4e-10
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	1e-04
1iar_B	207	Protein (interleukin-4 receptor alpha chain); cyto	5e-10
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	6e-10
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	1e-04
1he7_A	126	High affinity nerve growth factor receptor; transf	6e-10
1he7_A	126	High affinity nerve growth factor receptor; transf	1e-06
1he7_A	126	High affinity nerve growth factor receptor; transf	1e-04
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	9e-10
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	2e-09
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	7e-07
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	2e-09
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	2e-09
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	2e-09
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	2e-09
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	3e-09
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	4e-09
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	7e-09
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	8e-09
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	8e-09
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	8e-04
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	8e-09
1k85_A	88	Chitinase A1; fibronectin type III domain, chitin	9e-09
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	1e-08
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	1e-08
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	8e-06
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	1e-08
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	2e-08
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	4e-08
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	1e-05
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	7e-08
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	6e-07
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	1e-07
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	5e-06
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	1e-07
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	4e-07
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	4e-07
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	5e-07
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	6e-04
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	5e-07
3up1_A	223	Interleukin-7 receptor subunit alpha; cytokine rec	8e-07
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	9e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	1e-06
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	9e-04
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	1e-06
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	3e-04
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	2e-06
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	4e-05
2b5i_B	214	Interleukin-2 receptor beta chain; four-helix bund	2e-06
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	3e-06
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	1e-04
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	4e-06
2b5i_C	199	Cytokine receptor common gamma chain; four-helix b	5e-06
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	5e-06
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	6e-06
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	6e-05
2erj_C	247	Cytokine receptor common gamma chain; immune syste	9e-06
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	1e-05
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	2e-05
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	3e-05
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	3e-05
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	1e-04
2dle_A	104	Receptor-type tyrosine-protein phosphatase ETA; pr	7e-05
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	7e-05
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	1e-04
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	1e-04
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	2e-04
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	3e-04
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	3e-04
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	4e-04
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	4e-04
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	6e-04
3tgx_A	219	Interleukin-21 receptor; class I cytokine, class I	4e-04
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	5e-04
3qt2_A	317	Interleukin-5 receptor subunit alpha; cytokine typ	5e-04
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	6e-04
1oww_A	98	FN, fibronectin first type III module, CIG; fibron	7e-04
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	8e-04

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  193 bits (491), Expect = 5e-54
 Identities = 85/391 (21%), Positives = 138/391 (35%), Gaps = 63/391 (16%)

Query: 63  LIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG----RAK 118
           L+ KE  + P    +  D     G  V F CR+ G     + W +D   +        + 
Sbjct: 93  LVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSF 152

Query: 119 ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRD--DFRAEPKDTRVASG 176
           I +  +LQI        G Y C   N +G+ S  A LT+        F  +P    +A G
Sbjct: 153 IHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALG 212

Query: 177 ETALLECGPPKGQPEPTLHWKKNGQFI--DLESSKSLDLSRRTLGWLRVRP----LY--- 227
           E+   +C    G     + W K+ + I        +L  +  TL  L+V       Y   
Sbjct: 213 ESGTFKC-HVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCY 271

Query: 228 -WNV---ARPRANLN----PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGS 279
             NV       A L     PR+I +   S ++       R  C   GSP   V W ++ +
Sbjct: 272 ASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHT-RYECKIGGSPEIKVLWYKDET 330

Query: 280 QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE---FC 336
           +  +   + +    V     L +  +  ED+G + C A + AGS +    L+V+E   F 
Sbjct: 331 E--IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFR 388

Query: 337 VLPK-------GTFTL-----GQPN--------------------LATGNSDLRRIACDL 364
             P            L     G P                     ++        I  ++
Sbjct: 389 KKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHIL-NV 447

Query: 365 RETDSGLYTCTASSESGETSWSASLSVEPRP 395
              D G Y C AS++ G  +   S++++  P
Sbjct: 448 DSADIGEYQCKASNDVGSDTCVGSITLKAPP 478

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  190 bits (485), Expect = 4e-53
 Identities = 85/384 (22%), Positives = 132/384 (34%), Gaps = 64/384 (16%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDR-SLQI 127
           P+ I          G  +   C+V G P   I W ++  K+ +    + +  ++  SL I
Sbjct: 6   PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVI 65

Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTV--HLLRDDFRAEPKDTRVASGETALLECGP 185
             V   D G Y C  EN VG+++  A L +    L   F  + KD     G     EC  
Sbjct: 66  NKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFEC-R 124

Query: 186 PKGQPEPTLHWKKNGQFIDLES--SKSLDLSRRTLGWLRVRP----LYWNVAR------- 232
             G     + W K+G+ +  ++    S   +  TL  L+        Y   A        
Sbjct: 125 INGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTAS 184

Query: 233 PRANLN------PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPG 286
             A L       P +   K  S+ +          C   G+    + W ++     + PG
Sbjct: 185 SSAKLTLSEHEVPPFFDLKPVSVDLALGESG-TFKCHVTGTAPIKITWAKDN--REIRPG 241

Query: 287 NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE---FCVLPKGTF 343
             Y    V    TL +  V K DAG + C A +VAG  +  A L V+E   F    + + 
Sbjct: 242 GNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSR 301

Query: 344 TL-------------------------GQPNLATGNSDLRRIAC-------DLRETDSGL 371
            +                               +    +  +         +L   DSG 
Sbjct: 302 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 361

Query: 372 YTCTASSESGETSWSASLSVEPRP 395
           YTC A + +G  S S SL V+  P
Sbjct: 362 YTCEAHNAAGSASSSTSLKVKEPP 385

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  186 bits (475), Expect = 8e-52
 Identities = 81/387 (20%), Positives = 126/387 (32%), Gaps = 63/387 (16%)

Query: 62  KLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP-TGRAKIL 120
           KL   E  + PF   +P    +  G    F C V G     I W +D+ ++   G  K+ 
Sbjct: 188 KLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMT 247

Query: 121 ---DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVAS-G 176
              +  +L +  V   D G Y C   N+ G  S  A L V      F  + + +R+    
Sbjct: 248 LVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ-EPPRFIKKLEPSRIVKQD 306

Query: 177 ETALLECGPPKGQPEPTLHWKKNGQFIDLES--SKSLDLSRRTLGWLRVRP----LY--- 227
           E    EC    G PE  + W K+   I   S    S   S   L    +       Y   
Sbjct: 307 EHTRYEC-KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 365

Query: 228 -WNVA---RPRANLN----PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGS 279
             N A       +L     P +  +      +        L C  +G+P   V W ++  
Sbjct: 366 AHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGAD--VHLECELQGTPPFQVSWHKDKR 423

Query: 280 QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE---FC 336
           ++    G  Y  +      ++ I  V   D G + C A +  GS T    + ++    F 
Sbjct: 424 ELR--SGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFV 481

Query: 337 VLPK-------GTFTL-----GQPNLA----------TGNSDLRRIACD----------L 364
                          L     G   ++             SD   I+             
Sbjct: 482 KKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRA 541

Query: 365 RETDSGLYTCTASSESGETSWSASLSV 391
              ++G YTC   +E+G     A+LSV
Sbjct: 542 EPANAGKYTCQIKNEAGTQECFATLSV 568

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  156 bits (396), Expect = 5e-41
 Identities = 59/290 (20%), Positives = 102/290 (35%), Gaps = 35/290 (12%)

Query: 71  KPFPISEPSD-ATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG----RAKILDDRSL 125
            P  I +      V       + C++GG P   +LW +D+ ++        + +     L
Sbjct: 290 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVL 349

Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGP 185
           ++ N+  +D G Y C+  N  GS S   SL V      FR +P       G    LEC  
Sbjct: 350 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE-PPVFRKKPHPVETLKGADVHLEC-E 407

Query: 186 PKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWN-------VARPRANLN 238
            +G P   + W K+ + +     K   +S   L  + +  +           A      N
Sbjct: 408 LQGTPPFQVSWHKDKREL-RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKAS-----N 461

Query: 239 PRYIGRKMASLLIWNHPRVNR--------------LSCFAEGSPLPSVFWTQEGSQVLMF 284
                  + S+ +   PR  +              L    EG+   SV W ++    ++ 
Sbjct: 462 DVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDK-GEIVR 520

Query: 285 PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
             +     +     TL+    +  +AG + C   + AG+    A L V E
Sbjct: 521 ESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 84.9 bits (210), Expect = 2e-17
 Identities = 37/176 (21%), Positives = 61/176 (34%), Gaps = 39/176 (22%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            L C  +G+P   + W +E +++      AY         +L I  V   D G + C A 
Sbjct: 24  TLQCKVDGTPEIRIAWYKEHTKL--RSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAE 81

Query: 319 SVAGSTTVRAFLQVREFCVLPK-------GTFTLGQPNL----ATGN------------- 354
           +  G+    A L ++E  + P           TLG P        G+             
Sbjct: 82  NSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGEL 141

Query: 355 ----SDLRRIACD---------LRETDSGLYTCTASSESGETSWSASLSVEPRPGP 397
               ++L+                ++  G Y C+AS+  G  S SA L++     P
Sbjct: 142 LKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVP 197

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDS 406
            +  +D G YTC A +  G  + SA L ++ R  P +  R    
Sbjct: 67  KVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKD 110

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  184 bits (470), Expect = 1e-53
 Identities = 65/288 (22%), Positives = 95/288 (32%), Gaps = 59/288 (20%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            L C   G P P V W ++G +++                 L I  V  +DA  +   A 
Sbjct: 23  TLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82

Query: 319 SVAGSTTVRAFLQVRE---------------FCVLPKGTFTL-----GQPNL-------- 350
           +  GS +  A L+V                    L     ++     G+P+         
Sbjct: 83  NQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQ 142

Query: 351 ------------ATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPH 398
                        T +         +   D+G Y   A +  G    +  L V   P P 
Sbjct: 143 DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDP- 201

Query: 399 AVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTG 458
                         P    + + +R SV L W EP   GG  + +  Y VE  ++  +  
Sbjct: 202 --------------PRGVKVSDVSRDSVNLTWTEPASDGG--SKITNYIVEKCATTAER- 244

Query: 459 WVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
           W+    +   T  TV +L   TSY F V AEN  GL  PS  S  T T
Sbjct: 245 WLRVG-QARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTIT 291

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  116 bits (291), Expect = 7e-29
 Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 11/162 (6%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT--GRAKILDDR----SLQIE 128
             E  +  V   S    VC+V G P P + W R   ++     + +I + +     L I 
Sbjct: 8   KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIA 67

Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVH----LLRDDFRAEPKDTRVASGETALLECG 184
           +V   D  +Y     N  GS+S  ASL V     +                GE   ++  
Sbjct: 68  SVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKI- 126

Query: 185 PPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPL 226
           P  G+P+P + W+K    ID      + ++R     +    +
Sbjct: 127 PFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGV 168

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 87.1 bits (216), Expect = 5e-19
 Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 38/201 (18%)

Query: 163 DFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK-SLDLSRRTLGWL 221
            F+ E ++  V     A L C    G P+P + W + G+ I  +  K  +   +     L
Sbjct: 6   HFKEELRNLNVRYQSNATLVC-KVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64

Query: 222 RVRPL-------YWNVARPRANLNPRYIGRKMASLLIWNHPRVN---------------- 258
            +  +       Y   A      N        ASL +    +++                
Sbjct: 65  IIASVTDDDATVYQVRAT-----NQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG 119

Query: 259 ---RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT--LRIQGVQKEDAGFF 313
               +     G P P + W +    +     N +  + VT+  T  +   GV+++DAGF+
Sbjct: 120 EVVSIKIPFSGKPDPVITWQKGQDLI---DNNGHYQVIVTRSFTSLVFPNGVERKDAGFY 176

Query: 314 VCSALSVAGSTTVRAFLQVRE 334
           V  A +  G       L V +
Sbjct: 177 VVCAKNRFGIDQKTVELDVAD 197

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDRS----LQ 126
           P  +        L G VV       G P P I W++    +   G  +++  RS    + 
Sbjct: 105 PKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVF 164

Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTV 157
              V  +D G Y+   +N  G       L V
Sbjct: 165 PNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  186 bits (473), Expect = 4e-53
 Identities = 83/389 (21%), Positives = 130/389 (33%), Gaps = 76/389 (19%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTG---RAKILDDRSLQ 126
               +SEPSDA  + G  V   C       +P I W++D   +  G   R + L + SL 
Sbjct: 21  SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLL 80

Query: 127 IENV-----GPQDEGLYICDVENLVGS--ISLRASLTVHLLRDDFRAEPKDTRVASGETA 179
           I+N+        DEGLY C+         IS  A + V      F ++ +      G+T 
Sbjct: 81  IQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPL-RFLSQTESITAFMGDTV 139

Query: 180 LLECGPPKGQPEPTLHWKKNGQFIDL--ESSKSLDLSRRTL------------------- 218
           LL+C    G P PT+HW+KN Q ++     S+ + L    L                   
Sbjct: 140 LLKC-EVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARN 198

Query: 219 --GWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQ 276
                        +          Y  ++ ++++         L C   G P PS  W +
Sbjct: 199 PASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDA-VLECCVSGYPPPSFTWLR 257

Query: 277 EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE-- 334
               + +          +     L I  V  +D+G + C       + +  A L V    
Sbjct: 258 GEEVIQLRS----KKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPP 313

Query: 335 -FCVLPK-------GTFTL-----------------GQPNLATG------NSDLRRIACD 363
            F   P                              G   + +        S+L RI   
Sbjct: 314 WFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNL-RIL-G 371

Query: 364 LRETDSGLYTCTASSESGETSWSASLSVE 392
           + ++D G Y C A +E+G    SA L V 
Sbjct: 372 VVKSDEGFYQCVAENEAGNAQSSAQLIVP 400

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  181 bits (460), Expect = 3e-51
 Identities = 72/292 (24%), Positives = 104/292 (35%), Gaps = 39/292 (13%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDRSLQ 126
               +S+    T   G  V   C V GDP+PTI W+++   +       R  +L   +LQ
Sbjct: 121 PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQ 180

Query: 127 IENVGPQDEGLYICDVENLVGSI-SLRASLTVH-----LLRDDFRAEPKDTRVASGETAL 180
           I  + P D G+Y C   N   +     A + +        +  F   P +     G+ A+
Sbjct: 181 ISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAV 240

Query: 181 LECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP----LYWNVARPRAN 236
           LEC    G P P+  W +  + I L S K   L    L    V       Y  V      
Sbjct: 241 LEC-CVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVT---- 295

Query: 237 LNPRYIGRKMASLLIWNHPRVN--------------RLSCFAEGSPLPSVFWTQEGSQVL 282
                     A L +   P                    C   G P+P+V W + G  V+
Sbjct: 296 -YKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVI 354

Query: 283 MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
                   +  +     LRI GV K D GF+ C A + AG+    A L V +
Sbjct: 355 -----PSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  123 bits (309), Expect = 1e-30
 Identities = 67/317 (21%), Positives = 106/317 (33%), Gaps = 71/317 (22%)

Query: 143 ENLVGSISLRASLTVHL-LRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 201
            + + S            L   F +EP D     G   LL C     +  P + WKK+G 
Sbjct: 4   GSELESSHHHHHHGGRRSLH--FVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGL 61

Query: 202 FIDL-ESSKSLDLSRRTLGWLRVRP---------LYWNVARPR---------ANLN---P 239
            + L    +   L   +L    +           LY   A            A +    P
Sbjct: 62  ILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGP 121

Query: 240 RYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 299
                +  S+  +    V  L C   G P+P++ W +    +   PG+    + V   G 
Sbjct: 122 LRFLSQTESITAFMGDTV-LLKCEVIGDPMPTIHWQKNQQDLNPIPGD--SRVVVLPSGA 178

Query: 300 LRIQGVQKEDAGFFVCSALSVAGSTTVR-AFLQVRE---------FCVLPK-------GT 342
           L+I  +Q  D+G + CSA + A + T   A +++           F   P          
Sbjct: 179 LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKD 238

Query: 343 FTL-----GQP-------------------NLATGNSDLRRIACDLRETDSGLYTCTASS 378
             L     G P                       G S+L  I+ ++ + DSG YTC  + 
Sbjct: 239 AVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNL-LIS-NVTDDDSGTYTCVVTY 296

Query: 379 ESGETSWSASLSVEPRP 395
           ++   S SA L+V   P
Sbjct: 297 KNENISASAELTVLVPP 313

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 63.3 bits (154), Expect = 8e-11
 Identities = 38/184 (20%), Positives = 59/184 (32%), Gaps = 46/184 (25%)

Query: 259 RLSCFAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGV-----QKEDAGF 312
            L+C AE    +P + W ++G  +                G+L IQ +      K D G 
Sbjct: 40  LLNCSAESDRGVPVIKWKKDGLIL---ALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGL 96

Query: 313 FVCSALSVAGSTTV--RAFLQVRE---FCVLPK-------GTFTL-----GQPN------ 349
           + C A      + +   A + V     F    +        T  L     G P       
Sbjct: 97  YQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQ 156

Query: 350 -----LATGNSDLRRIAC--------DLRETDSGLYTCTASSESGE-TSWSASLSVEPRP 395
                L     D R +           L+  DSG+Y C+A + +   T   A + +   P
Sbjct: 157 KNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDP 216

Query: 396 GPHA 399
           G H 
Sbjct: 217 GLHR 220

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  193 bits (492), Expect = 8e-53
 Identities = 94/495 (18%), Positives = 151/495 (30%), Gaps = 113/495 (22%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR------S 124
           K   +++    T    S +  +C   G P+P   W +        +A +L+DR      +
Sbjct: 248 KVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGT 307

Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVHL-LRDDFRAEPKDTRVASGETALLEC 183
           L I++   +D G Y+C V N VG  S+   LTV   L    + +P    V  G  A+  C
Sbjct: 308 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLS--AKIDPPTQTVDFGRPAVFTC 365

Query: 184 GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR--------------------RTLGWLRV 223
               G P  T+ W K+G+ I   S   L +                           L++
Sbjct: 366 -QYTGNPIKTVSWMKDGKAIG-HSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 423

Query: 224 RPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLM 283
              +          +P  I +      +   P V  L C A G+P P + W  +G ++  
Sbjct: 424 GGRF----------DPPVIRQAFQEETMEPGPSV-FLKCVAGGNPTPEISWELDGKKIAN 472

Query: 284 ---FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE---FCV 337
              +    Y  ++      L I  V   D G + C A S  G     A L V        
Sbjct: 473 NDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQ 532

Query: 338 LPKGTFTLGQP---------------------NLATGNSDLR-------RIACDLRETDS 369
           + K     G+                           N   +        I    R +D 
Sbjct: 533 MEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQ 592

Query: 370 GLYTCTASSESGE-TSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTL 428
             YTC A ++ G     S  + V   P            +       P  +      +TL
Sbjct: 593 ATYTCVAKNQEGYSARGSLEVQVMVLP----------RIIPFAFEEGPAQVG---QYLTL 639

Query: 429 GW---GEPEPR-------GGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKP 478
                G   P        G  ++  +G T                     + +T+  ++ 
Sbjct: 640 HCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRR-------------GSVLTIEAVEA 686

Query: 479 DTSYMFIVRAENSHG 493
             +  F   A N  G
Sbjct: 687 SHAGNFTCHARNLAG 701

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  177 bits (449), Expect = 4e-47
 Identities = 74/394 (18%), Positives = 123/394 (31%), Gaps = 71/394 (18%)

Query: 72  PFPISEPSDA-TVLSGSVVEFVCRVGGDPLPTILWRRDDGKM---PTGRAKILDDRSLQI 127
           P  + EP++     + +  E  C+  G+P+P I+W R DG       G  +I  D  L  
Sbjct: 39  PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVF 98

Query: 128 ENVGPQD------EGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALL 181
                +D        +Y C   N  GSI  R      ++   + A+     V  G +A++
Sbjct: 99  PPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVI 158

Query: 182 ECGPPK--GQPEPTLHWKKNGQFIDLESSKSLD----LSRRTLGWLRVRP---------- 225
           +C  P         + W  + +      ++       L    L    V P          
Sbjct: 159 KCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCR 218

Query: 226 ---------------LYWNVARPRANLNPRYIG-RKMASLLIWNHPRVNRLSCFAEGSPL 269
                              +  P ++  P+ +   K           +  L C A+G P+
Sbjct: 219 TKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTM-ALLCPAQGYPV 277

Query: 270 PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF 329
           P   W +                     GTL I+    ED+G ++C   +  G  +V   
Sbjct: 278 PVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV 337

Query: 330 LQVRE---FCVLPK-------GTFTL-----GQPN-----------LATGNSDLRRIACD 363
           L V       + P                  G P            +    S L RI   
Sbjct: 338 LTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVL-RIE-S 395

Query: 364 LRETDSGLYTCTASSESGETSWSASLSVEPRPGP 397
           +++ D G+Y C   ++      SA L +  R  P
Sbjct: 396 VKKEDKGMYQCFVRNDRESAEASAELKLGGRFDP 429

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  174 bits (443), Expect = 3e-46
 Identities = 74/390 (18%), Positives = 136/390 (34%), Gaps = 82/390 (21%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
                 +P   TV  G    F C+  G+P+ T+ W +D      G+A    +  L+IE+V
Sbjct: 343 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD------GKAIGHSESVLRIESV 396

Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHLLRDD--FRAEPKDTRVASGETALLECGPPKG 188
             +D+G+Y C V N   S    A L +    D    R   ++  +  G +  L+C    G
Sbjct: 397 KKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKC-VAGG 455

Query: 189 QPEPTLHWKKNGQFID----LESSKSLDLSRRTLGWLRVRPL-------YWNVARPRANL 237
            P P + W+ +G+ I      +  + + ++   + +L +  +       Y  +A+     
Sbjct: 456 NPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAK----- 510

Query: 238 NPRYIGRKMASLLIWNHPRVN-------------RLSCFAEGSPLPSVFWTQEGSQVLMF 284
           +   +    A L ++  P +               ++C   G P+ S+ W ++   +   
Sbjct: 511 SKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRAL--- 567

Query: 285 PGNAYGHLHVTQEGTLRIQGVQK-EDAGFFVCSALSVAG-STTVRAFLQVRE-------- 334
                    V   GTL I+ V++  D   + C A +  G S      +QV          
Sbjct: 568 --PINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFA 625

Query: 335 ---FCVLPKGTFTL------------------GQPNLATGNSDLRRIA--------CDLR 365
                       TL                  GQ           R+           + 
Sbjct: 626 FEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVE 685

Query: 366 ETDSGLYTCTASSESGETSWSASLSVEPRP 395
            + +G +TC A + +G   ++  L+V   P
Sbjct: 686 ASHAGNFTCHARNLAGHQQFTTPLNVYVPP 715

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  174 bits (442), Expect = 3e-46
 Identities = 78/404 (19%), Positives = 133/404 (32%), Gaps = 83/404 (20%)

Query: 66  KEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT-GRAKILDD-- 122
                 P       + T+  G  V   C  GG+P P I W  D  K+    R ++     
Sbjct: 424 GGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVT 483

Query: 123 ------RSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASG 176
                   L I +V   D GLY C  ++ VG     A L V+ L   +  + +   + +G
Sbjct: 484 VNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP--YIRQMEKKAIVAG 541

Query: 177 ETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYW-------- 228
           ET ++ C P  G P  ++ W+++ + + +   + +  +    G L +  +          
Sbjct: 542 ETLIVTC-PVAGYPIDSIVWERDNRALPINRKQKVFPN----GTLIIENVERNSDQATYT 596

Query: 229 --------NVARPRANLN----PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLP-SVFWT 275
                     AR    +     PR I              +  L C   G  LP ++ WT
Sbjct: 597 CVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYL-TLHCSVPGGDLPLNIDWT 655

Query: 276 QEGSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
            +G  +            V +    L I+ V+   AG F C A ++AG       L V  
Sbjct: 656 LDGQAIS--EDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYV 713

Query: 335 ---FCVLPK-------GTFTL-----GQP------------------------NLATGNS 355
              + + P            +     G P                        N+     
Sbjct: 714 PPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEG 773

Query: 356 DLRRIACDLRETDSGLYTCTASSESGETSWSAS-LSVEPRPGPH 398
            L  +  ++++T+ G Y C A +  G    +   +SV+     H
Sbjct: 774 TL-HVD-NIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHHHHH 815

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  158 bits (402), Expect = 5e-41
 Identities = 71/428 (16%), Positives = 128/428 (29%), Gaps = 97/428 (22%)

Query: 67  EALIKPFPISEPSDATVLSGSVVEFVCRV---GGDPLPTILWRRDDGKMPT------GRA 117
            A++  +  ++ +   V+ G+     C +     D +  + W  D+ +         G+ 
Sbjct: 134 RAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKY 193

Query: 118 KILDDRSLQIENVGPQD-EGLYICDVENLVGSISLRASLTVHLLRDD----------FRA 166
            +L    L I  VGP+D    Y C  ++ +   +  ++    L+  +            A
Sbjct: 194 LVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLA 253

Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI----DLESSKSLDLSRRTLGWLR 222
           +      +   T  L C P +G P P   W K  +       +  +  +     TL    
Sbjct: 254 KFDMKTYSGSSTMALLC-PAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKD 312

Query: 223 VRP----LY----WNV---ARPRANLN---PRYIGRKMASLLIWNHPRVNRLSCFAEGSP 268
                   Y     N          L    P        +  +         +C   G+P
Sbjct: 313 AVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPA-VFTCQYTGNP 371

Query: 269 LPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA 328
           + +V W ++G  +               E  LRI+ V+KED G + C   +   S    A
Sbjct: 372 IKTVSWMKDGKAI------------GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASA 419

Query: 329 FLQVREFC-------------VLPKGTFTL-----------------GQPNLATGNSDLR 358
            L++                 + P  +  L                 G+         + 
Sbjct: 420 ELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVG 479

Query: 359 RIAC------------DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDS 406
           +                +   D GLY C A S+ G    SA L+V   P    + +M   
Sbjct: 480 QYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP---YIRQMEKK 536

Query: 407 GLFPGPPA 414
            +  G   
Sbjct: 537 AIVAGETL 544

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  103 bits (259), Expect = 3e-23
 Identities = 71/448 (15%), Positives = 117/448 (26%), Gaps = 114/448 (25%)

Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRD-DFRAEPKDT-RVASGETALLE 182
           + + N   +   L+        GS +L A+      +   F  EP +    ++   A +E
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60

Query: 183 CGPPKGQPEPTLHW-KKNGQFIDLESSKSLDLSRRTLGWLRVRP----------LYWNVA 231
           C    G P P + W + +G  +          S   L +   R           +Y  +A
Sbjct: 61  C-KASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLA 119

Query: 232 R--------PRANLNPRYIGRKMASLLIWNHPRVNR-----LSCFAE---GSPLPSVFWT 275
           R           ++         A +   N   V R     + C         +  V W 
Sbjct: 120 RNQFGSIISRDVHVRAVVAQYYEADV---NKEHVIRGNSAVIKCLIPSFVADFVEVVSWH 176

Query: 276 QEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDA-GFFVCSALSVAGSTTVRAFLQVRE 334
            +  +         G   V   G L I+ V  ED    + C         T  +  + R 
Sbjct: 177 TDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRL 236

Query: 335 FCVLPKG---------------------TFTL-----GQP----------------NLAT 352
               P                       T  L     G P                    
Sbjct: 237 VITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVV 296

Query: 353 GNSDLRRIACDL-----RETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSG 407
            N  +++++  L        DSG Y C  ++  G  S    L+V       A    P   
Sbjct: 297 LNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP--LSAKIDPPTQT 354

Query: 408 LFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
           +  G    P +        T   G P             TV          W+     I 
Sbjct: 355 VDFG---RPAVFTCQ---YT---GNPIK-----------TVS---------WMKDGKAIG 385

Query: 468 ST--SITVSDLKPDTSYMFIVRAENSHG 493
            +   + +  +K +   M+     N   
Sbjct: 386 HSESVLRIESVKKEDKGMYQCFVRNDRE 413

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  183 bits (465), Expect = 6e-52
 Identities = 61/391 (15%), Positives = 102/391 (26%), Gaps = 72/391 (18%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPT-ILWRRDDGKMPTG---RAKILDDRSLQ 126
            P    +P++      +     C + G+       W++D           A   D+ SL 
Sbjct: 6   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV 65

Query: 127 IENVGPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGP 185
                  DEG Y C  E   G   S   S     L     A+  +     G    L+C  
Sbjct: 66  FLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIA-SPAKTHEKTPIEGRPFQLDCVL 124

Query: 186 PKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL---GWLRVR------------------ 224
           P   P+P + WKK     D  +  +    R T    G L                     
Sbjct: 125 PNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAK 184

Query: 225 -------------PLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPS 271
                         +                      ++         + C    +P+  
Sbjct: 185 NAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVT-MIYCMYGSNPMGY 243

Query: 272 VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR-AFL 330
             + + G  V   P +     + T    L  +    ED G + C   +  G        L
Sbjct: 244 PNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKL 303

Query: 331 QVRE---FCVLPKGTFTL-------------GQP--------NLATGNSDLRRIA----- 361
            V     +   P+    +             G P        N    +     +      
Sbjct: 304 TVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLV 363

Query: 362 -CDLRETDSGLYTCTASSESGETSWSASLSV 391
              ++  D G Y C A++E G+  +   + V
Sbjct: 364 IKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 88.8 bits (220), Expect = 5e-19
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 71  KPFPISEPSDATVLS-GSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIEN 129
            P    +P    V+  G  V   C+V G P P ++W  +   +  GRA + D   L I+ 
Sbjct: 308 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDS-GLVIKG 366

Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVH 158
           V   D+G Y C   N  G       + V+
Sbjct: 367 VKNGDKGYYGCRATNEHGDKYFETLVQVN 395

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 81.9 bits (202), Expect = 7e-17
 Identities = 51/307 (16%), Positives = 86/307 (28%), Gaps = 81/307 (26%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPT-LHWKKNGQFIDL-ESSKSLDLSRRTLGWL 221
            + +P +         +LEC   +G  +     WKK+G+  +  E + +L     +L +L
Sbjct: 9   LKDQPAEVLFRENNPTVLEC-IIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFL 67

Query: 222 RVRP----LYWNVARPRANLNP------RYIGRKMASLLIWNHPRVN---------RLSC 262
           R +      Y   A       P      R I  +   L+                 +L C
Sbjct: 68  RPQASDEGHYQCFAE-----TPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDC 122

Query: 263 -FAEGSPLPSVFWTQEGSQVLM--FPGNAYGHLHVTQEGTLRIQGVQKEDA---GFFVCS 316
                 P P + W +  S         +    +    +G L    V KED      +VC+
Sbjct: 123 VLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCT 182

Query: 317 ALSVAGSTTVR-AFLQVREFCVLPKG-----TFTLGQPNL-------------ATGN--- 354
           A + A    V     +++       G            ++                N   
Sbjct: 183 AKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMG 242

Query: 355 -------------SDLRRIAC------------DLRETDSGLYTCTASSESGE-TSWSAS 388
                        +   RI                   D G+YTC   +  G+    S  
Sbjct: 243 YPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLK 302

Query: 389 LSVEPRP 395
           L+V   P
Sbjct: 303 LTVVSAP 309

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 66.5 bits (162), Expect = 7e-12
 Identities = 42/330 (12%), Positives = 78/330 (23%), Gaps = 84/330 (25%)

Query: 259 RLSCFAEGSPLPSVF-WTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 317
            L C  EG+     + W ++G     +    +       EG+L     Q  D G + C A
Sbjct: 25  VLECIIEGNDQGVKYSWKKDGKS---YNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFA 81

Query: 318 LSVAGSTTVR-AFLQV---REFCVLPK-------GTFTL------GQP--------NLAT 352
            + AG  + R    +                     F L        P         L+ 
Sbjct: 82  ETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSG 141

Query: 353 GNSDLRRIACDLR------------------ETDSGLYTCTASSESGET-SWSASLSVEP 393
            + +      D R                   +D   Y CTA + + +         ++ 
Sbjct: 142 ADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKG 201

Query: 394 RPGPHAVHRMPDSGLFPGPPAAPVILNTTRG-SVTL---GWGEPEP-----RGGGVAPVI 444
               ++ ++       P P      +    G    +       P       + G      
Sbjct: 202 VTKDNSGYKGE-----PVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGN 256

Query: 445 GYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
                   +                 +      P+   ++    +N  G        P  
Sbjct: 257 PEDRITRHNRTSGK-----------RLLFKTTLPEDEGVYTCEVDNGVG-------KPQK 298

Query: 505 RTLGLNSLVP----QHLLDEARARLGTKVV 530
            +L L  +      Q        + G  V 
Sbjct: 299 HSLKLTVVSAPKYEQKPEKVIVVKQGQDVT 328

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  181 bits (462), Expect = 1e-51
 Identities = 82/381 (21%), Positives = 124/381 (32%), Gaps = 72/381 (18%)

Query: 75  ISEPSDATV---LSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAK--ILDDRSLQIEN 129
           + EPS            V+  C V G+P P I W+ +   +  G      + D SL I N
Sbjct: 9   VQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINN 68

Query: 130 VG-PQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPK 187
               QD G Y C   N  G+I S  A L    L +          V  G+  +L CGPP 
Sbjct: 69  PNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPP 128

Query: 188 GQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP---------------------- 225
              E +  W  N      ++ + +      L   +V                        
Sbjct: 129 HSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGP 188

Query: 226 ---LYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVL 282
              L            P+   +   ++       V +L CFA G+P+P++ W +   + +
Sbjct: 189 PTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTV-KLECFALGNPVPTILWRRADGKPI 247

Query: 283 MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE---FCVLP 339
                A  H      G L I   Q+EDAG + C A +  G    +  L       +  + 
Sbjct: 248 --ARKARRHKS---NGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQII 302

Query: 340 K-------GTFTL-----------------GQPNLATG-----NSDLRRIACDLRETDSG 370
                    +                    G P L           L  I   +  +D+G
Sbjct: 303 NDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTL-NIT-IVNLSDAG 360

Query: 371 LYTCTASSESGETSWSASLSV 391
           +Y C A ++ G    SA LSV
Sbjct: 361 MYQCVAENKHGVIFSSAELSV 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  149 bits (379), Expect = 5e-40
 Identities = 62/293 (21%), Positives = 98/293 (33%), Gaps = 38/293 (12%)

Query: 68  ALIKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPT--GRAKILDDRS 124
           A ++ F     S  +V  G  +  +C         +  W  ++        R    +  +
Sbjct: 99  AYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGN 158

Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDD----------FRAEPKDTRVA 174
           L I  V   D G Y C V N V +  +    T  +LR+D              P+     
Sbjct: 159 LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAE 218

Query: 175 SGETALLECGPPKGQPEPTLHWKK-NGQFIDLESSKSLDLSRRTLGWLRVRP----LY-- 227
            G T  LEC    G P PT+ W++ +G+   +        S   L     +      Y  
Sbjct: 219 KGTTVKLEC-FALGNPVPTILWRRADGK--PIARKARRHKSNGILEIPNFQQEDAGSYEC 275

Query: 228 --WN---VARPRANLN---PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGS 279
              N       +  L         + +  + +     V    C A G P P+  W + G 
Sbjct: 276 VAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESV-FWECKANGRPKPTYRWLKNGD 334

Query: 280 QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332
            +L         + + ++GTL I  V   DAG + C A +  G     A L V
Sbjct: 335 PLL-----TRDRIQI-EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 94.9 bits (236), Expect = 4e-21
 Identities = 66/406 (16%), Positives = 104/406 (25%), Gaps = 118/406 (29%)

Query: 164 FRAEPKDTRV---ASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGW 220
           F  EP        +  +   L C   KG P+P + WK NG  +D+       +   +L  
Sbjct: 8   FVQEPSHVMFPLDSEEKKVKLSC-EVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLI 66

Query: 221 LRVRPL-----YWNVAR--------PRANLNPRYIGRKMASLLIWNHPRVN--------- 258
                      Y  +A           A L   Y+             R           
Sbjct: 67  NNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLEN------FKTRTRSTVSVRRGQGM 120

Query: 259 RLSCFA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 317
            L C     S   S  W         +  N        + G L I  V+K D G + C  
Sbjct: 121 VLLCGPPPHSGELSYAWIFNEYPS--YQDN--RRFVSQETGNLYIAKVEKSDVGNYTCVV 176

Query: 318 LSVAGSTTVR---AFLQVRE------------------FCVLPKGTFTL-----GQP--- 348
            +   +  V      L +R                          T  L     G P   
Sbjct: 177 TNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPT 236

Query: 349 --------NLATGNSDLRRIACDLR-----ETDSGLYTCTASSESGETSWSASLSVEPRP 395
                         +   +    L      + D+G Y C A +  G+      L+   + 
Sbjct: 237 ILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ- 295

Query: 396 GPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLG---WGEPEP-----RGGGVAPVIGYT 447
            P+ V  + D  +                SV       G P+P     + G         
Sbjct: 296 -PNWVQIINDIHVAME------------ESVFWECKANGRPKPTYRWLKNGDPLLTRDR- 341

Query: 448 VEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHG 493
                            +I   ++ ++ +    + M+   AEN HG
Sbjct: 342 ----------------IQIEQGTLNITIVNLSDAGMYQCVAENKHG 371

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 89.1 bits (221), Expect = 3e-19
 Identities = 25/88 (28%), Positives = 38/88 (43%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
           +P  +   +D  V     V + C+  G P PT  W ++   + T     ++  +L I  V
Sbjct: 295 QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIV 354

Query: 131 GPQDEGLYICDVENLVGSISLRASLTVH 158
              D G+Y C  EN  G I   A L+V 
Sbjct: 355 NLSDAGMYQCVAENKHGVIFSSAELSVI 382

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  178 bits (453), Expect = 2e-51
 Identities = 66/286 (23%), Positives = 106/286 (37%), Gaps = 35/286 (12%)

Query: 77  EPSDATVLSGSVVEFVCRVGGDPL-PTILWRRDDGKM---PTGRAKIL----DDRSLQIE 128
            PS   +  G    F+C+V GD     I W   +G+       R  ++    D  +L I 
Sbjct: 8   VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIY 67

Query: 129 NVGPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPK 187
           N    D G+Y C V    G+      ++ +   +  F+  P       GE A++ C    
Sbjct: 68  NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ-KLMFKNAPTPQEFKEGEDAVIVC-DVV 125

Query: 188 GQPEPTLHWKKNGQFIDLESS-KSLDLSRRTLGWLRVRPL----YWNVARPRANLNPRYI 242
               PT+ WK  G+ + L+   + + LS   L    ++      Y    R    L    I
Sbjct: 126 SSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGR---ILARGEI 182

Query: 243 GRKMASLLIWNHPRVN----------------RLSCFAEGSPLPSVFWTQEGSQVLMFPG 286
             K   +++   P V                  L C A+G P P++ WT++G  +     
Sbjct: 183 NFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEE 242

Query: 287 NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332
           +   H+       L I+ V K D   +VC A + AG       L+V
Sbjct: 243 DDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  123 bits (310), Expect = 2e-31
 Identities = 36/146 (24%), Positives = 54/146 (36%), Gaps = 7/146 (4%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT---GRAKILDDRSLQI 127
           K    + P+      G     VC V     PTI+W+     +      R  +L +  LQI
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI 159

Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTVHLL---RDDFRAEPKDTRVASGETALLECG 184
             +   DEG Y C+   L         + V +        R    +     G++  L C 
Sbjct: 160 RGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVC- 218

Query: 185 PPKGQPEPTLHWKKNGQFIDLESSKS 210
              G PEPT+ W K+G+ I+ E    
Sbjct: 219 DADGFPEPTMSWTKDGEPIENEEEDD 244

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  105 bits (264), Expect = 2e-25
 Identities = 42/294 (14%), Positives = 78/294 (26%), Gaps = 70/294 (23%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKK-NGQFIDLESSKSLDLSRRTLGW-L 221
               P    ++ GE+    C       +  + W   NG+ +     +   +        L
Sbjct: 5   VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTL 64

Query: 222 RVRPLYWNVARP-------RANLNPRYIGRKMASLLIWNHPRVNR--------------L 260
            +     N                         ++ I+                     +
Sbjct: 65  TIY----NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120

Query: 261 SCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 320
            C    S  P++ W  +G  V++          V     L+I+G++K D G + C    +
Sbjct: 121 VCDVVSSLPPTIIWKHKGRDVILKKD---VRFIVLSNNYLQIRGIKKTDEGTYRCEGRIL 177

Query: 321 AGSTTVRAFLQV--------------REFCVLPKGTFTL-----------------GQPN 349
           A        +QV                       + TL                 G+P 
Sbjct: 178 ARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPI 237

Query: 350 LATGNSDLRRIAC---------DLRETDSGLYTCTASSESGETSWSASLSVEPR 394
                 D + I           ++ + D   Y C A +++GE   S  L V  +
Sbjct: 238 ENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 83.4 bits (206), Expect = 8e-18
 Identities = 28/98 (28%), Positives = 35/98 (35%), Gaps = 8/98 (8%)

Query: 69  LIKPFPISEPS--DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP------TGRAKIL 120
            + P   +  S  +AT   G  V  VC   G P PT+ W +D   +              
Sbjct: 192 NVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSD 251

Query: 121 DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
           D   L I NV   DE  Y+C  EN  G       L V 
Sbjct: 252 DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 68.7 bits (168), Expect = 7e-13
 Identities = 28/195 (14%), Positives = 53/195 (27%), Gaps = 40/195 (20%)

Query: 259 RLSCFAEGSPL-PSVFWTQEGSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCS 316
              C   G      + W     + L         +    +  TL I     +DAG + C 
Sbjct: 21  FFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV 80

Query: 317 ALSVAGST-TVRAFLQVRE---FCVLPKG-TFTLGQP-NL---ATGN------------- 354
             +  G+       +++ +   F   P    F  G+   +      +             
Sbjct: 81  VTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRD 140

Query: 355 ----SDLR---------RIACDLRETDSGLYTCTASSESGETSWSAS--LSVEPRPGPHA 399
                D+R         +I   +++TD G Y C     +          + V   P   A
Sbjct: 141 VILKKDVRFIVLSNNYLQIR-GIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQA 199

Query: 400 VHRMPDSGLFPGPPA 414
              + ++    G   
Sbjct: 200 RQSIVNATANLGQSV 214

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  178 bits (452), Expect = 2e-50
 Identities = 76/385 (19%), Positives = 128/385 (33%), Gaps = 78/385 (20%)

Query: 75  ISEPSDATVLSGSV---VEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRSLQIE 128
             +P+      GS    V   CR   +P  T  W+ +  ++  G   R +++    +   
Sbjct: 8   EEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISN 67

Query: 129 NVGPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPK 187
            V  +D G Y C   N  G++ S  ASL    L++    E    ++  G   +  C PP 
Sbjct: 68  PVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPP 127

Query: 188 GQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPL-------YWNVARPRANLNPR 240
             P  +  W  N     + +     +S+ T G L +          Y   A    +   +
Sbjct: 128 HYPALSYRWLLNEFPNFIPADGRRFVSQTT-GNLYIAKTEASDLGNYSCFATSHIDFITK 186

Query: 241 YIGRKMASLLIWNHPRVN---------------------RLSCFAEGSPLPSVFWTQEGS 279
            +  K + L +                             L CFA G+P+P + W +   
Sbjct: 187 SVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDG 246

Query: 280 QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE---FC 336
                         ++ E  L IQ V  ED G + C A ++ G  T +  + +     + 
Sbjct: 247 SQTSK--------WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWL 298

Query: 337 VLPK-------GTFTL-----------------GQPNLATG-----NSDLRRIACDLRET 367
            +                               GQP  +         +L R +  L   
Sbjct: 299 DVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGEL-RFS-KLVLE 356

Query: 368 DSGLYTCTASSESGETSWSASLSVE 392
           DSG+Y C A ++ G    SA L+V+
Sbjct: 357 DSGMYQCVAENKHGTVYASAELTVQ 381

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  146 bits (370), Expect = 7e-39
 Identities = 57/296 (19%), Positives = 89/296 (30%), Gaps = 42/296 (14%)

Query: 68  ALIKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMP----TGRAKILDD 122
             ++ F   E     +  G  V F C      P  +  W  ++          R      
Sbjct: 98  GFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTT 157

Query: 123 RSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDD-----------FRAEPKDT 171
            +L I      D G Y C   + +  I+         L                  P DT
Sbjct: 158 GNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADT 217

Query: 172 RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP----LY 227
              +G+   LEC    G P P + W+K         +     S   L    V       Y
Sbjct: 218 YALTGQMVTLEC-FAFGNPVPQIKWRKLDG----SQTSKWLSSEPLLHIQNVDFEDEGTY 272

Query: 228 ----WN---VARPRANLN---PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQE 277
                N       +  +           +          + R SC A G P P+V W ++
Sbjct: 273 ECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDL-RWSCVASGKPRPAVRWLRD 331

Query: 278 GSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR 333
           G  +      +   + V+  G LR   +  ED+G + C A +  G+    A L V+
Sbjct: 332 GQPL-----ASQNRIEVSG-GELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 97.2 bits (242), Expect = 5e-22
 Identities = 61/406 (15%), Positives = 100/406 (24%), Gaps = 118/406 (29%)

Query: 164 FRAEPKDTRV---ASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGW 220
           F  +P  T     ++ E   L C   +  P  T  WK NG  + +       L    L  
Sbjct: 7   FEEQPAHTLFPEGSAEEKVTLTC-RARANPPATYRWKMNGTELKMGPDSRYRLVAGDL-- 63

Query: 221 LRVRPL-------YWNVAR--------PRANLNPRYIGRKMASLLIWNHPRVN------- 258
           +   P+       Y  VA           A+L   ++             R         
Sbjct: 64  VISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQE------FSAEERDPVKITEGW 117

Query: 259 --RLSCFA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 315
               +C      P  S  W        +              G L I   +  D G + C
Sbjct: 118 GVMFTCSPPPHYPALSYRWLLNEFPNFIPADG--RRFVSQTTGNLYIAKTEASDLGNYSC 175

Query: 316 SALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLR-------RIAC------ 362
            A S     T   F +  +  +  +          A   +D          + C      
Sbjct: 176 FATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNP 235

Query: 363 ---------------------------DLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
                                      ++   D G Y C A +  G  ++   + +  + 
Sbjct: 236 VPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQ- 294

Query: 396 GPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLG---WGEPEP-----RGGGVAPVIGYT 447
            P  +  + D+    G              +       G+P P     R G         
Sbjct: 295 -PDWLDVITDTEADIG------------SDLRWSCVASGKPRPAVRWLRDGQPLASQNR- 340

Query: 448 VEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHG 493
                             ++   +  S L  + S M+   AEN HG
Sbjct: 341 ----------------IEVSGGELRFSKLVLEDSGMYQCVAENKHG 370

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  178 bits (452), Expect = 3e-50
 Identities = 72/387 (18%), Positives = 122/387 (31%), Gaps = 76/387 (19%)

Query: 75  ISEPSDA-TVLSGSVVEFVCRVGGDPLPTILWRRDDGKM---PTGRAKILDDRSLQIENV 130
           + EP++     + +  E  C+  G+P+P I+W R DG       G  +I  D  L     
Sbjct: 7   LKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPF 66

Query: 131 GPQD------EGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLEC 183
             +D        +Y C   N  GSI S    +   +    + A+     V  G +A+++C
Sbjct: 67  RAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVA-QYYEADVNKEHVIRGNSAVIKC 125

Query: 184 GPPK--GQPEPTLHWKKNGQFIDLESSKSLDLSRRTL---GWLRVR-------------- 224
             P         + W  + +      ++     +  +   G L +R              
Sbjct: 126 LIPSFVADFVEVVSWHTDEEENYFPGAE--YDGKYLVLPSGELHIREVGPEDGYKSYQCR 183

Query: 225 --------------PLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLP 270
                              +  P ++  PR        L +     +  L C A+G P P
Sbjct: 184 TKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTI-SLLCPAQGFPAP 242

Query: 271 SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL 330
           S  W +                     GTL I+    ED+G ++C   +  G  +V   L
Sbjct: 243 SFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 302

Query: 331 QVRE---FCVLPK-------GTFTL-----GQPN-----------LATGNSDLRRIACDL 364
            V       + P                  G P            +    S L RI   +
Sbjct: 303 TVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVL-RIE-SV 360

Query: 365 RETDSGLYTCTASSESGETSWSASLSV 391
           ++ D G+Y C   ++      SA L +
Sbjct: 361 KKEDKGMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  132 bits (334), Expect = 5e-34
 Identities = 53/300 (17%), Positives = 97/300 (32%), Gaps = 55/300 (18%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVG---GDPLPTILWRRDDGKMPT------GRAKILDD 122
            +  ++ +   V+ G+     C +     D +  + W  D+ +         G+  +L  
Sbjct: 104 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS 163

Query: 123 RSLQIENVGPQD-EGLYICDVENLVGS-ISLRASLTVHLLRDD--------FRAEPKDTR 172
             L I  VGP+D    Y C  ++ +     L A+    ++ +              K   
Sbjct: 164 GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLE 223

Query: 173 VASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGW------LRVRP- 225
           +    T  L C P +G P P+  W K  +       +++ L+ R                
Sbjct: 224 LMVAHTISLLC-PAQGFPAPSFRWYKFIE--GTTRKQAVVLNDRVKQVSGTLIIKDAVVE 280

Query: 226 ---LY----WNV---ARPRANLN---PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSV 272
               Y     N          L    P        +  +         +C   G+P+ +V
Sbjct: 281 DSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPA-VFTCQYTGNPIKTV 339

Query: 273 FWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332
            W ++G  +               E  LRI+ V+KED G + C   +   S    A L++
Sbjct: 340 SWMKDGKAI------------GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 86.5 bits (214), Expect = 2e-18
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
                 +P   TV  G    F C+  G+P+ T+ W +D      G+A    +  L+IE+V
Sbjct: 307 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD------GKAIGHSESVLRIESV 360

Query: 131 GPQDEGLYICDVENLVGSISLRASLTV 157
             +D+G+Y C V N   S    A L +
Sbjct: 361 KKEDKGMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 80.4 bits (198), Expect = 2e-16
 Identities = 58/413 (14%), Positives = 95/413 (23%), Gaps = 124/413 (30%)

Query: 164 FRAEPKDT-RVASGETALLECGPPKGQPEPTLHW-KKNGQFIDLESSKSLDLSRRTLGWL 221
           F  EP +    ++   A +EC    G P P + W + +G  +          S   L + 
Sbjct: 6   FLKEPTNRIDFSNSTGAEIEC-KASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFP 64

Query: 222 RVRP----------LYWNVARPRANLNP------RYIGRKMASLLIWNHPRVN------- 258
             R           +Y  +AR     N       R +  +      +             
Sbjct: 65  PFRAEDYRQEVHAQVYACLAR-----NQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGN 119

Query: 259 --RLSCFAE---GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDA-GF 312
              + C         +  V W  +  +         G   V   G L I+ V  ED    
Sbjct: 120 SAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKS 179

Query: 313 FVCSALSVAGSTTV------RAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIAC---- 362
           + C         T       R  +        P+    + +P        +  + C    
Sbjct: 180 YQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTI-SLLCPAQG 238

Query: 363 -------------------------------------DLRETDSGLYTCTASSESGETSW 385
                                                D    DSG Y C  ++  G  S 
Sbjct: 239 FPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV 298

Query: 386 SASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLG---WGEPEPRGGGVAP 442
              L+V       A    P   +  G                      G P         
Sbjct: 299 ETVLTVTAP--LSAKIDPPTQTVDFG------------RPAVFTCQYTGNPIK------- 337

Query: 443 VIGYTVEYFSSDLQTGWVVAAHRITST--SITVSDLKPDTSYMFIVRAENSHG 493
               TV          W+     I  +   + +  +K +   M+     N   
Sbjct: 338 ----TVS---------WMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRE 377

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  173 bits (441), Expect = 1e-49
 Identities = 60/291 (20%), Positives = 100/291 (34%), Gaps = 31/291 (10%)

Query: 68  ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK--MPTGRAKILDD--- 122
           ++         S   +  G    F C   G+P  +I W    G+  + T R  +  +   
Sbjct: 1   SMALLQVTISLSKVELSVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVR 59

Query: 123 RSLQIENVGPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALL 181
             L I N   +D G+Y C   +  G        L ++  +  FR          GE A +
Sbjct: 60  SRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY-QKLTFREVVSPQEFKQGEDAEV 118

Query: 182 ECGPPKGQPEPTLHWKKNGQFIDLESS-KSLDLSRRTLGWLRVRP----LY----WNVAR 232
            C      P P + W  + + +   S  +   L+   L  L +      +Y       AR
Sbjct: 119 VC-RVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEAR 177

Query: 233 PRANLNPRYIGRKMASLLIWNHPRVN---------RLSCFAEGSPLPSVFWTQEGSQVLM 283
              +     +   +   +       N           SC A GSP P++ W + G  +  
Sbjct: 178 GEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLI-- 235

Query: 284 FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
              N   ++       L ++ +   D G +VC A + AG    +AFLQV  
Sbjct: 236 -EENEK-YILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 284

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  107 bits (269), Expect = 4e-26
 Identities = 45/287 (15%), Positives = 76/287 (26%), Gaps = 62/287 (21%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES--SKSLDLSRRTLGWL 221
                    ++ GE+    C    G+PE    +   G+ I          +  R  L   
Sbjct: 7   VTISLSKVELSVGESKFFTC-TAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIY 65

Query: 222 RVRP----LYWNVAR--------PRANLN---PRYIGRKMASLLIWNHPRVNRLSCFAEG 266
                   +Y   A             L           ++            + C    
Sbjct: 66  NANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDA-EVVCRVSS 124

Query: 267 SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL-SVAGSTT 325
           SP P+V W     +V     N +    +     L+I  + K D G + C       G   
Sbjct: 125 SPAPAVSWLYHNEEVTTISDNRF---AMLANNNLQILNINKSDEGIYRCEGRVEARGEID 181

Query: 326 VRAFLQV-------------REFCVLPKGTFTL-----GQP------------------- 348
            R  + +                        T      G P                   
Sbjct: 182 FRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY 241

Query: 349 NLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
            L   N++L  +  ++  +D G Y C A++++GE    A L V  + 
Sbjct: 242 ILKGSNTEL-TVR-NIINSDGGPYVCRATNKAGEDEKQAFLQVFVQH 286

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 89.1 bits (221), Expect = 9e-20
 Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 7/111 (6%)

Query: 52  ARGALSDDQWKLIAKEALIKPFPIS--EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD 109
           ARG +      +I       P      +  +AT   G  + F CR  G P P I W R+ 
Sbjct: 176 ARGEIDFRDIIVIVNVP---PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNG 232

Query: 110 GKM-PTGRAKIL-DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
             +    +  +   +  L + N+   D G Y+C   N  G    +A L V 
Sbjct: 233 KLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 283

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 29/192 (15%), Positives = 52/192 (27%), Gaps = 38/192 (19%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
             +C A G P    ++  +G    +                L I     EDAG + C A 
Sbjct: 23  FFTCTAIGEPESIDWYNPQG--EKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQAT 80

Query: 319 SVAGST-TVRAFLQVRE---FCVLPKG-TFTLGQPNL----ATGN--------------- 354
              G T      L++ +   F  +     F  G+        + +               
Sbjct: 81  DAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVT 140

Query: 355 -SDLRRIA---------CDLRETDSGLYTCTASSESGETSWSAS--LSVEPRPGPHAVHR 402
                R A          ++ ++D G+Y C    E+          + V   P      +
Sbjct: 141 TISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQK 200

Query: 403 MPDSGLFPGPPA 414
             ++    G   
Sbjct: 201 SFNATAERGEEM 212

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  172 bits (438), Expect = 2e-49
 Identities = 67/290 (23%), Positives = 102/290 (35%), Gaps = 32/290 (11%)

Query: 68  ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKIL---DDR 123
           A+  PF   +P    +  G    F C V G     I W +D+ ++ P G  K+    +  
Sbjct: 2   AMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 61

Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTR-VASGETALLE 182
           +L +  V   D G Y C   N+ G  S  A L V      F  + + +R V   E    E
Sbjct: 62  TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP-RFIKKLEPSRIVKQDEHTRYE 120

Query: 183 CGPPKGQPEPTLHWKKNGQFIDLESSK--SLDLSRRTLGWLRVRP----LY----WNVA- 231
           C    G PE  + W K+   I   S    S   S   L    +       Y     N A 
Sbjct: 121 C-KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG 179

Query: 232 --RPRANLN---PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPG 286
                 +L    P    +K   +       V  L C  +G+P   V W ++  ++    G
Sbjct: 180 SASSSTSLKVKEPPVFRKKPHPVETLKGADV-HLECELQGTPPFQVSWHKDKREL--RSG 236

Query: 287 NAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR 333
                  +  E    ++ I  V   D G + C A +  GS T    + ++
Sbjct: 237 K---KYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  127 bits (320), Expect = 6e-33
 Identities = 57/281 (20%), Positives = 98/281 (34%), Gaps = 57/281 (20%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK--SLDLSRRTLGWL 221
           F  +P    +A GE+   +C    G     + W K+ + I    +   +L  +  TL  L
Sbjct: 8   FDLKPVSVDLALGESGTFKC-HVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVL 66

Query: 222 RVRP----LYWNVAR-------PRANLN----PRYIGRKMASLLIWNHPRVNRLSCFAEG 266
           +V       Y   A          A L     PR+I +   S ++       R  C   G
Sbjct: 67  KVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHT-RYECKIGG 125

Query: 267 SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV 326
           SP   V W ++ +++     + +    V     L +  +  ED+G + C A + AGS + 
Sbjct: 126 SPEIKVLWYKDETEIQ--ESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS 183

Query: 327 RAFLQVRE---FCVLPK-------GTFTL-----GQPN--------------------LA 351
              L+V+E   F   P            L     G P                     ++
Sbjct: 184 STSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMS 243

Query: 352 TGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVE 392
                   I  ++   D G Y C AS++ G  +   S++++
Sbjct: 244 ENFLTSIHIL-NVDSADIGEYQCKASNDVGSYTCVGSITLK 283

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 88.3 bits (219), Expect = 2e-19
 Identities = 42/172 (24%), Positives = 62/172 (36%), Gaps = 37/172 (21%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
              C   G+    + W ++  ++   PG  Y    V    TL +  V K DAG + C A 
Sbjct: 24  TFKCHVTGTAPIKITWAKDNREIR--PGGNYKMTLVENTATLTVLKVTKGDAGQYTCYAS 81

Query: 319 SVAGSTTVRAFLQVRE---FCVLPKG--TFTLGQPNL----ATGN--------------- 354
           +VAG  +  A L V+E   F    +        +         G+               
Sbjct: 82  NVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQ 141

Query: 355 -SDLRRIAC----------DLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
            S   R++           +L   DSG YTC A + +G  S S SL V+  P
Sbjct: 142 ESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPP 193

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  175 bits (444), Expect = 7e-49
 Identities = 73/393 (18%), Positives = 122/393 (31%), Gaps = 82/393 (20%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG----RAKILDDRSLQI 127
                   D  V     +   C   G+P P+  W R+            +      +L I
Sbjct: 18  TITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVI 77

Query: 128 ENV----GPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLE 182
           +        + EG Y C   N  G+  S R  L V       +       V  G    L+
Sbjct: 78  DFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQ 137

Query: 183 CGPPKGQPEPTLHWKKNGQFIDLESSK-------SL------------------------ 211
           C PP G P P + W  +      +  +        L                        
Sbjct: 138 CNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTH 197

Query: 212 DLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPS 271
            + ++    L+V        R  + + P+      +S ++     +  L C A G P P 
Sbjct: 198 TIQQKNPFTLKVLTTRGVAERTPSFMYPQ---GTASSQMVLRGMDL-LLECIASGVPTPD 253

Query: 272 VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 331
           + W ++G  +   P +            LRI  V +ED+G + C A +  GS      ++
Sbjct: 254 IAWYKKGGDL---PSD--KAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVR 308

Query: 332 VRE---FCVLPK-------GTFTL-----------------GQPNLATGNSDLRRIA--- 361
           V+    +   PK           L                 G+P  +   +  R +A   
Sbjct: 309 VKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDT 368

Query: 362 ---CDLRETDSGLYTCTASSESGETSWSASLSV 391
               D + +   +Y C  S+E G    +A +SV
Sbjct: 369 IIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  148 bits (376), Expect = 2e-39
 Identities = 61/298 (20%), Positives = 91/298 (30%), Gaps = 38/298 (12%)

Query: 68  ALIKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPT--GRAKILDDRS 124
           +    +P        V  G+ +   C    G P P I W     +  T   R     +  
Sbjct: 113 SKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGD 172

Query: 125 LQIENVGPQD-EGLYICDVENLVG---SISLRASLTVHLLRDDFRAEPK---------DT 171
           L   NV  QD +  Y C+               +L V   R      P            
Sbjct: 173 LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQ 232

Query: 172 RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP----LY 227
            V  G   LLEC    G P P + W K G  +  + +K  +   + L    V       Y
Sbjct: 233 MVLRGMDLLLEC-IASGVPTPDIAWYKKGGDLPSDKAK-FENFNKALRITNVSEEDSGEY 290

Query: 228 ----WN---VARPRANLN----PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQ 276
                N     R   ++     P ++      +L        RL C A G+P P+V W  
Sbjct: 291 FCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGED-G-RLVCRANGNPKPTVQWMV 348

Query: 277 EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
            G  +   P N           T+  +  Q      + C+  +  G     AF+ V +
Sbjct: 349 NGEPLQSAPPNPN---REVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  135 bits (342), Expect = 6e-35
 Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 3/144 (2%)

Query: 62  KLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD 121
           + +A+      +P    S   VL G  +   C   G P P I W +  G +P+ +AK  +
Sbjct: 213 RGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFEN 272

Query: 122 -DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETAL 180
            +++L+I NV  +D G Y C   N +GSI    S+ V      +  EPK+  +A GE   
Sbjct: 273 FNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK-AAPYWLDEPKNLILAPGEDGR 331

Query: 181 LECGPPKGQPEPTLHWKKNGQFID 204
           L C    G P+PT+ W  NG+ + 
Sbjct: 332 LVC-RANGNPKPTVQWMVNGEPLQ 354

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 92.2 bits (229), Expect = 4e-20
 Identities = 70/408 (17%), Positives = 112/408 (27%), Gaps = 120/408 (29%)

Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK--SLDLSRRTLGWLRVR 224
             KD  V   +  L+EC   KG P P+ HW +N +F ++      S+     TL      
Sbjct: 23  SAKDHIVDPRDNILIEC-EAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRS 81

Query: 225 P--------LYWNVAR--------PRANLNPRYIGRKMASLLIWNHPRVN---------R 259
                     Y   AR         R  L                               
Sbjct: 82  GGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPL------WPKENLDPVVVQEGAPLT 135

Query: 260 LSCFA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDA-GFFVCSA 317
           L C    G P P +FW     + +    +    +     G L    V  +D    + C+A
Sbjct: 136 LQCNPPPGLPSPVIFWMSSSMEPI--TQD--KRVSQGHNGDLYFSNVMLQDMQTDYSCNA 191

Query: 318 LSVAGSTTVR---AFLQVREFCVLPKGTFTLGQPN------------------LATGN-- 354
                 T  +     L+V     + + T +   P                   +A+G   
Sbjct: 192 RFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPT 251

Query: 355 -------------SDLRRIAC--------DLRETDSGLYTCTASSESGETSWSASLSVEP 393
                        SD  +           ++ E DSG Y C AS++ G    + S+ V+ 
Sbjct: 252 PDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA 311

Query: 394 RPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLG---WGEPEP-----RGGGVAPVIG 445
              P+ +    +  L PG                L     G P+P       G   P+  
Sbjct: 312 A--PYWLDEPKNLILAPG------------EDGRLVCRANGNPKPTVQWMVNG--EPLQS 355

Query: 446 YTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHG 493
                               +   +I   D +  +  ++     N HG
Sbjct: 356 APPNPN------------REVAGDTIIFRDTQISSRAVYQCNTSNEHG 391

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  167 bits (425), Expect = 2e-47
 Identities = 74/296 (25%), Positives = 111/296 (37%), Gaps = 42/296 (14%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL-----DDRSL 125
            P  I EP D   +SG V  FVC+  GDP P + W +   K+ + R + +         L
Sbjct: 6   PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65

Query: 126 QIENVG-PQDEGLYICDVENLVGSISLRASLTVHLLRD------DFRAEPKDTRVASGET 178
           +I+ +  P+DE +Y C  +N VG I++ A LTV           +    P+   V    T
Sbjct: 66  RIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRT 125

Query: 179 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKS--LDLSRRTLGWLRVRP----LY----W 228
           A + C    G P+P + W K+   +D  +S      L    L            Y     
Sbjct: 126 ATMLC-AASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVAT 184

Query: 229 NVARPR----ANLN------PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEG 278
           N A  R    ANL                S  I     V  ++C A GSP+P V W Q  
Sbjct: 185 NSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNV-NITCVAVGSPMPYVKWMQGA 243

Query: 279 SQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
             +          +     G   ++    +D+  + C A+S  G     A + V+ 
Sbjct: 244 EDL---TPEDDMPV-----GRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKS 291

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  124 bits (312), Expect = 1e-31
 Identities = 66/292 (22%), Positives = 105/292 (35%), Gaps = 63/292 (21%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
           F  EPKD    SG  A   C    G P+P + W K G+ ++ +  ++++        LR+
Sbjct: 9   FIKEPKDQIGVSGGVASFVC-QATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRI 67

Query: 224 RPL--------YWNVAR-------PRANLN-PRYIGRKMASLLIWNHPRVN--------R 259
           +PL        Y  VA+         A L   R          I   P++          
Sbjct: 68  QPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTAT 127

Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319
           + C A G+P P + W ++   V   P  + G +   + G L+I+  ++ D G + C A +
Sbjct: 128 MLCAASGNPDPEITWFKDFLPV--DPSASNGRIKQLRSGALQIESSEETDQGKYECVATN 185

Query: 320 VAGS-TTVRAFLQVREFCVLPKGTFTLGQPNL-------------ATGN----------- 354
            AG   +  A L VR   V P+  F++   +              A G+           
Sbjct: 186 SAGVRYSSPANLYVRVQNVAPR--FSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGA 243

Query: 355 -----SDLRRIA----CDLRETDSGLYTCTASSESGETSWSASLSVEPRPGP 397
                 D   +           DS  YTC A S  G     A ++V+  P  
Sbjct: 244 EDLTPEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKA 295

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 75.2 bits (185), Expect = 6e-15
 Identities = 46/200 (23%), Positives = 64/200 (32%), Gaps = 45/200 (22%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ-KEDAGFFVCSA 317
              C A G P P V W ++G +V             +    LRIQ ++   D   + C A
Sbjct: 25  SFVCQATGDPKPRVTWNKKGKKVNSQRFE-TIEFDESAGAVLRIQPLRTPRDENVYECVA 83

Query: 318 LSVAGSTTVRAFLQVREFCVLPKG--TFTLGQPNL-------------ATGN-------- 354
            +  G  TV A L V     LP G     +G                 A+GN        
Sbjct: 84  QNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWF 143

Query: 355 ---------SDLRRIAC---------DLRETDSGLYTCTASSESGE-TSWSASLSVEPRP 395
                    +   RI              ETD G Y C A++ +G   S  A+L V  + 
Sbjct: 144 KDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQN 203

Query: 396 GPHAVHRMP-DSGLFPGPPA 414
                  +P    + PG   
Sbjct: 204 VAPRFSILPMSHEIMPGGNV 223

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  168 bits (426), Expect = 2e-46
 Identities = 62/402 (15%), Positives = 115/402 (28%), Gaps = 98/402 (24%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE-----GTLRIQGVQKEDAGFF 313
            L C AEG P+P + W +         G+      +  +      +L I+ V+  D+G +
Sbjct: 19  TLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRY 78

Query: 314 VCSALSVAGSTTVRAFLQVRE---FCVLPK-------GTFTL-----GQPNLA------- 351
            C A S  G      +L +     F                +       P  +       
Sbjct: 79  DCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDK 138

Query: 352 ---TGNSDLR------------RIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPG 396
                 +                IA    + D G Y CTA++  G       L++   P 
Sbjct: 139 LVLPAKNTTNLKTYSTGRKMILEIA-PTSDNDFGRYNCTATNHIGTRFQEYILALADVPS 197

Query: 397 PHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQ 456
                           P    I+  ++ +  + + +P+  GG   P+  Y V+      +
Sbjct: 198 S---------------PYGVKIIELSQTTAKVSFNKPDSHGG--VPIHHYQVDVKEVASE 240

Query: 457 TGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQH 516
             W +       T + +++L+P+T+Y   V A N  G G  S +                
Sbjct: 241 I-WKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTL---------- 289

Query: 517 LLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLREL 576
                R      +       P++  + +++             D+  A +   +V  R  
Sbjct: 290 ---PVREPSPPSI----HGQPSSGKSFKLSITKQ---------DDGGAPILEYIVKYRSK 333

Query: 577 IPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
                                         + HL+    YE 
Sbjct: 334 DKE-------DQWLEKKVQG----NKDHIILEHLQWTMGYEV 364

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  166 bits (421), Expect = 7e-46
 Identities = 61/400 (15%), Positives = 113/400 (28%), Gaps = 89/400 (22%)

Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL------GW 220
           + K+          L C   +G+P P + WK+                R  +        
Sbjct: 6   QLKNETTYENGQVTLVC-DAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 64

Query: 221 LRVRPL-------YWNVARPRANLNPRYIGRKMASLLIWNHPRVN--------------R 259
           L ++ +       Y   A      +     +K   L I   P+                 
Sbjct: 65  LHIKDVKLSDSGRYDCEAA-----SRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPIN 119

Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCS 316
           +SC  + +P  S+ W ++    L+ P     +L     G    L I      D G + C+
Sbjct: 120 ISCDVKSNPPASIHWRRDK---LVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCT 176

Query: 317 ALSVAGSTTVRAFLQVRE----------------FCVL--PKGTFTLGQP---------- 348
           A +  G+      L + +                   +   K     G P          
Sbjct: 177 ATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKE 236

Query: 349 -------NLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVH 401
                   + +       +  +L    +      A +  G+  +S               
Sbjct: 237 VASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIF---------Q 287

Query: 402 RMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVV 461
            +P     P PP+      ++  S  L   + +  G    P++ Y V+Y S D +  W+ 
Sbjct: 288 TLPVR--EPSPPSIHGQ-PSSGKSFKLSITKQDDGGA---PILEYIVKYRSKDKEDQWLE 341

Query: 462 AAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVS 501
              +     I +  L+    Y   + A N  G   P+   
Sbjct: 342 KKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYE 381

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  121 bits (304), Expect = 5e-30
 Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 14/149 (9%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG--------KMPTGRAKILDD 122
           +P  I +  + T      V  VC   G+P+P I W+R           K   GR ++   
Sbjct: 1   QP-HIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59

Query: 123 R---SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETA 179
               SL I++V   D G Y C+  + +G       L +      F +         G   
Sbjct: 60  HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE-YAPKFISNQTIYYSWEGNPI 118

Query: 180 LLECGPPKGQPEPTLHWKKNGQFIDLESS 208
            + C   K  P  ++HW+++   +  +++
Sbjct: 119 NISC-DVKSNPPASIHWRRDKLVLPAKNT 146

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 74.8 bits (184), Expect = 2e-14
 Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP---TGRAKILDDR---SLQIE 128
           IS  +      G+ +   C V  +P  +I WRRD   +P   T   K         L+I 
Sbjct: 104 ISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIA 163

Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTV 157
                D G Y C   N +G+      L +
Sbjct: 164 PTSDNDFGRYNCTATNHIGTRFQEYILAL 192

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  159 bits (404), Expect = 3e-43
 Identities = 49/392 (12%), Positives = 104/392 (26%), Gaps = 80/392 (20%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR---SLQIE 128
              + E +   V   + +     V      + LW      +       L +R   S+ I 
Sbjct: 49  SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVIL 108

Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKG 188
            +     G Y+  +++   + ++  ++++      +       R    + AL  C   + 
Sbjct: 109 KMTETQAGEYLLFIQSEATNYTILFTVSIRN-TLLYTLRRPYFRKMENQDAL-VC-ISES 165

Query: 189 QPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPL----YWNVARPRANLNPRYIGR 244
            PEP + W         ES K    +        +  L        AR     N   +GR
Sbjct: 166 VPEPIVEWVLCDS--QGESCKEESPAVVKKEEKVLHELFGTDIRCCAR-----NE--LGR 216

Query: 245 KMASLLIWNHPRVNR---------------LSCFA-EGSPLPSVFWTQEGSQVL---MFP 285
           +   L   +  +  +               + C A   +    + W  E   +     F 
Sbjct: 217 ECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFE 276

Query: 286 GNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFT 344
            + Y             +  V + D G++ CS+      +   A + + E         T
Sbjct: 277 MSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS---ALVTIVE---KGFINAT 330

Query: 345 LGQPNLATGNSDLRRIAC-----------------------------------DLRETDS 369
               +      +    +                                       +   
Sbjct: 331 NSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQP 390

Query: 370 GLYTCTASSESGETSWSASLSVEPRPGPHAVH 401
           G Y   A ++  + +   +L++      H  H
Sbjct: 391 GEYIFHAENDDAQFTKMFTLNIRSGTKHHHHH 422

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  136 bits (344), Expect = 5e-35
 Identities = 29/287 (10%), Positives = 61/287 (21%), Gaps = 35/287 (12%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRSLQI 127
                        +       VC     P P + W   D +  +       ++      +
Sbjct: 140 TLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVL 198

Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPK 187
             +   D     C   N +G    R       L    +       +  GE   + C    
Sbjct: 199 HELFGTD---IRCCARNELGRECTRLFTID--LNQTPQTTLPQLFLKVGEPLWIRCKAVH 253

Query: 188 GQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLY----------------WNVA 231
                 L W+   + ++  +   +         +R+   +                    
Sbjct: 254 VNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHP 313

Query: 232 RPRANLN----PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGN 287
              A +             +     +       S   +  P     WT            
Sbjct: 314 SQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPC---- 369

Query: 288 AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
                 +    ++      K   G ++  A +     T    L +R 
Sbjct: 370 --EQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRS 414

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 96.3 bits (239), Expect = 2e-21
 Identities = 43/333 (12%), Positives = 80/333 (24%), Gaps = 82/333 (24%)

Query: 123 RSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLE 182
            + +  +        Y    E+      L  +L           E     V    +  L+
Sbjct: 15  INHKNNDSSVGKSSSYPMVSESPED---LGCALRPQSSG--TVYEAAAVEVDVSASITLQ 69

Query: 183 CGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWL---RVRP----LYWNVARPRA 235
                     +  W        L      DL  R +  +   ++       Y    +   
Sbjct: 70  V-LVDAPGNISCLWVFKHS--SLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQ--- 123

Query: 236 NLNPRYIGRKMASLLIWNHPRVNR-------------LSCFAEGSPLPSVFWTQEGSQVL 282
             +       + ++ I N                   L C +E  P P V W    SQ  
Sbjct: 124 --SEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGE 181

Query: 283 MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE-------- 334
                +     V ++    +  +   D     C A +  G    R F             
Sbjct: 182 SCKEESPA---VVKKEEKVLHELFGTD---IRCCARNELGRECTRLFTIDLNQTPQTTLP 235

Query: 335 ------------FCVLPKGTFTL-------GQP---------NLATGNSDLRRIAC---- 362
                        C                 +          +  + N  + RI      
Sbjct: 236 QLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVS 295

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
            +   D+G YTC++S    +   SA +++  + 
Sbjct: 296 SVARNDTGYYTCSSSKHPSQ---SALVTIVEKG 325

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  163 bits (415), Expect = 3e-43
 Identities = 58/371 (15%), Positives = 102/371 (27%), Gaps = 71/371 (19%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL-DDRSLQIEN 129
               I+  +   V     V   C         + W  +     + R ++  D+R+L + +
Sbjct: 289 PKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLS 348

Query: 130 VGPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKG 188
           V   D G Y C ++N +    S    L V    DD    P  T    G    L C     
Sbjct: 349 VTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSC-HAAS 407

Query: 189 QPEPTLHWKKNGQFIDLESSKSLDLSR--------------------RTLGWLRVRPLYW 228
            P     W  +G     + ++ L +S                            +     
Sbjct: 408 NPPAQYSWLIDGNI--QQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSA- 464

Query: 229 NVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNA 288
            + +P  + N         ++           +C  E     +  W   G  +       
Sbjct: 465 ELPKPSISSNNSKPVEDKDAVA---------FTCEPEAQN-TTYLWWVNGQSLP-----V 509

Query: 289 YGHLHVTQE-GTLRIQGVQKEDAGFFVCSALSVAGS-TTVRAFLQVRE-----------F 335
              L ++    TL +  V + DA  +VC   +   +  +    L V              
Sbjct: 510 SPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDS 569

Query: 336 CVLPKGTFTL-----GQPNLA----------TGNSDLRRIACDLRETDSGLYTCTASSES 380
             L      L       P+                 L  IA  +   ++G Y C  S+ +
Sbjct: 570 SYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQVL-FIA-KITPNNNGTYACFVSNLA 627

Query: 381 GETSWSASLSV 391
              + S   S+
Sbjct: 628 TGRNNSIVKSI 638

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  155 bits (394), Expect = 2e-40
 Identities = 66/404 (16%), Positives = 107/404 (26%), Gaps = 91/404 (22%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVG 131
             P   P + +  SG  +   C    +P     W  +     +        + L I N+ 
Sbjct: 204 DAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST-------QELFIPNIT 256

Query: 132 PQDEGLYICDVENLVGSISLRASLTVHLLRD---DFRAEPKDTRVASGETALLECGPPKG 188
             + G Y C   N    ++     T+ +  +    F        V   +   L C  P+ 
Sbjct: 257 VNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTC-EPEI 315

Query: 189 QPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP----LYWNVARPRANLNPRYIGR 244
           Q   T  W  N Q + +     L    RTL  L V       Y    +     N   +  
Sbjct: 316 QN-TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQ-----NELSVDH 369

Query: 245 KMASLL-------IWNHPRVN---------RLSCFAEGSPLPSVFWTQEGSQVLMFPGNA 288
               +L                         LSC A  +P     W  +G+         
Sbjct: 370 SDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGN--------- 420

Query: 289 YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPK-------- 340
                      L I  + ++++G + C A + A   +      +     LPK        
Sbjct: 421 ----IQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNS 476

Query: 341 ------GTFTL-----GQP------------------NLATGNSDLRRIACDLRETDSGL 371
                            Q                    L+ GN  L  +  ++   D+  
Sbjct: 477 KPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRTL-TLF-NVTRNDARA 534

Query: 372 YTCTASSESGE-TSWSASLSVEPRPGPHAVHRMPDSGLFPGPPA 414
           Y C   +      S   +L V   P    +   PDS    G   
Sbjct: 535 YVCGIQNSVSANRSDPVTLDVLYGP-DTPIISPPDSSYLSGANL 577

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  152 bits (386), Expect = 2e-39
 Identities = 72/372 (19%), Positives = 116/372 (31%), Gaps = 63/372 (16%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKI-LDDRSLQIEN 129
              IS  +   V     V F C        T LW  ++  +P   R ++   +R+L + N
Sbjct: 112 KPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGNRTLTLFN 170

Query: 130 VGPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKG 188
           V   D   Y C+ +N V +  S    L V    D     P +T   SGE   L C     
Sbjct: 171 VTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAA-S 229

Query: 189 QPEPTLHWKKNGQFIDLESSKSLDLSR---------------RTLGWLRVRPLYWNVARP 233
            P     W  NG F    S++ L +                    G  R       V   
Sbjct: 230 NPPAQYSWFVNGTFQQ--STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAE 287

Query: 234 RANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLH 293
                P+       S  + +   V  L+C  E     +  W      + +        L 
Sbjct: 288 P----PKPFITSNNSNPVEDEDAV-ALTCEPEIQN-TTYLWWVNNQSLPV-----SPRLQ 336

Query: 294 VTQEG-TLRIQGVQKEDAGFFVCSALSVAGSTTVRAF-LQVR----------EFCVLPKG 341
           ++ +  TL +  V + D G + C   +           L V            +     G
Sbjct: 337 LSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPG 396

Query: 342 -TFTL-----GQP----------NLATGNSDLRRIACDLRETDSGLYTCTASSESGETSW 385
              +L       P          N+     +L  I+ ++ E +SGLYTC A++ +   S 
Sbjct: 397 VNLSLSCHAASNPPAQYSWLIDGNIQQHTQEL-FIS-NITEKNSGLYTCQANNSASGHSR 454

Query: 386 SASLSVEPRPGP 397
           +   ++      
Sbjct: 455 TTVKTITVSAEL 466

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  146 bits (370), Expect = 3e-37
 Identities = 48/281 (17%), Positives = 75/281 (26%), Gaps = 42/281 (14%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVG 131
             P   PS      G  +   C    +P     W   DG +          + L I N+ 
Sbjct: 382 DDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLI-DGNI------QQHTQELFISNIT 434

Query: 132 PQDEGLYICDVENLVGSISLRASLTVHLLRDD---FRAEPKDTRVASGETALLECGPPKG 188
            ++ GLY C   N     S     T+ +  +      +      V   +     C  P+ 
Sbjct: 435 EKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTC-EPEA 493

Query: 189 QPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP----LYWNVAR--------PRAN 236
           Q   T  W  NGQ + +     L    RTL    V       Y    +            
Sbjct: 494 QN-TTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVT 552

Query: 237 LN----PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHL 292
           L+    P             +   +  LSC +  +P P   W   G              
Sbjct: 553 LDVLYGPDTPIISPPDSSYLSGANL-NLSCHSASNPSPQYSWRINGIP------------ 599

Query: 293 HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR 333
                  L I  +   + G + C   ++A          + 
Sbjct: 600 -QQHTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSIT 639

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  140 bits (353), Expect = 3e-35
 Identities = 65/413 (15%), Positives = 98/413 (23%), Gaps = 93/413 (22%)

Query: 77  EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--------------------GKMPTGR 116
           E +   V  G  V  +       L    W + +                    G   +GR
Sbjct: 5   ESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGR 64

Query: 117 AKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDD---FRAEPKDTRV 173
             I  + SL I+N+   D G Y   V          A+    +  +      +      V
Sbjct: 65  EIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNE-EATGQFRVYPELPKPSISSNNSKPV 123

Query: 174 ASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP----LYWN 229
              +     C  P+ Q   T  W  N Q + +     L    RTL    V       Y  
Sbjct: 124 EDKDAVAFTC-EPETQD-ATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKC 181

Query: 230 VAR--------PRANLNPRYIGRKMASLLIWNHPRVNR---LSCFAEGSPLPSVFWTQEG 278
             +            LN  Y         +    R      LSC A  +P     W   G
Sbjct: 182 ETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNG 241

Query: 279 SQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVL 338
           +                    L I  +   ++G + C A +            +  +   
Sbjct: 242 T-------------FQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEP 288

Query: 339 PKGTFTLGQPNLATGNSDLRRIAC------------------------------------ 362
           PK   T    N       +  + C                                    
Sbjct: 289 PKPFITSNNSNPVEDEDAV-ALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLL 347

Query: 363 DLRETDSGLYTCTASSESGET-SWSASLSVEPRPGPHAVHRMPDSGLFPGPPA 414
            +   D G Y C   +E     S    L+V   P          +   PG   
Sbjct: 348 SVTRNDVGPYECGIQNELSVDHSDPVILNVLYGP-DDPTISPSYTYYRPGVNL 399

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  113 bits (283), Expect = 2e-26
 Identities = 37/164 (22%), Positives = 58/164 (35%), Gaps = 5/164 (3%)

Query: 54  GALSDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP 113
              S    K I   A +    IS  +   V     V F C         + W        
Sbjct: 450 SGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPV 509

Query: 114 TGRAKIL-DDRSLQIENVGPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDT 171
           + R ++   +R+L + NV   D   Y+C ++N V +  S   +L V    D     P D+
Sbjct: 510 SPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDS 569

Query: 172 RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR 215
              SG    L C      P P   W+ NG       ++ L +++
Sbjct: 570 SYLSGANLNLSC-HSASNPSPQYSWRINGIPQQ--HTQVLFIAK 610

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 76.5 bits (188), Expect = 9e-15
 Identities = 44/317 (13%), Positives = 74/317 (23%), Gaps = 95/317 (29%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
              E     VA G+  LL       Q      W K            +D +R+ +G+   
Sbjct: 2   LTIESTPFNVAEGKEVLLLVHNL-PQHLFGYSWYKGE---------RVDGNRQIIGY--- 48

Query: 224 RPLYWNVARPRANLNPRYIGRKMASLLIWN------------------------------ 253
             +    A P    + R I    ASLLI N                              
Sbjct: 49  -VIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVY 107

Query: 254 ---------HPRVN--------RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 296
                                   +C  E     +  W      + + P           
Sbjct: 108 PELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQL----SNG 162

Query: 297 EGTLRIQGVQKEDAGFFVCSALSVAGSTTVR-AFLQVREFCVLPKGTF-----TLGQP-- 348
             TL +  V + D   + C   +   +       L V      P  +        G+   
Sbjct: 163 NRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLN 222

Query: 349 -------------------NLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASL 389
                                     +L  I  ++   +SG YTC A +     + +   
Sbjct: 223 LSCHAASNPPAQYSWFVNGTFQQSTQEL-FIP-NITVNNSGSYTCQAHNSDTGLNRTTVT 280

Query: 390 SVEPRPGPHAVHRMPDS 406
           ++     P       ++
Sbjct: 281 TITVYAEPPKPFITSNN 297

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  157 bits (397), Expect = 5e-43
 Identities = 56/321 (17%), Positives = 88/321 (27%), Gaps = 60/321 (18%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
                +       SG  VE  C   GG P+   +W +D   +      ++  + LQ+ N 
Sbjct: 9   GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNA 68

Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHLLRDD------------------------FRA 166
             +D G Y C        +   +                                   R 
Sbjct: 69  SHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERM 128

Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPL 226
           + K   V +  T    C P  G P P++ W KNG+    E        R     L +  +
Sbjct: 129 DKKLLAVPAANTVRFRC-PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESV 187

Query: 227 -------Y----WNVA-----------RPRANLNPRYIGRKMASLLIWNHPRVNRLSCFA 264
                  Y     N               R+   P       A+        V    C  
Sbjct: 188 VPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDV-EFHCKV 246

Query: 265 EGSPLPSVFW-----------TQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFF 313
                P + W             +G+  +     A  +    +   L +  V  EDAG +
Sbjct: 247 YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEY 306

Query: 314 VCSALSVAGSTTVRAFLQVRE 334
            C A +  G +   A+L V  
Sbjct: 307 TCLAGNSIGFSHHSAWLVVLP 327

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  110 bits (276), Expect = 1e-26
 Identities = 57/322 (17%), Positives = 86/322 (26%), Gaps = 93/322 (28%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
              + +     SG+   L C PP G P     W K+G    L  S+ + +  + L  L  
Sbjct: 11  EPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGT--GLVPSERVLVGPQRLQVLNA 68

Query: 224 RP----LYWNVAR----------------PRANLNPRYIGRKMASLLIWNHPRVN----- 258
                  Y    R                P +  +         + +    P        
Sbjct: 69  SHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERM 128

Query: 259 -------------RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGV 305
                        R  C A G+P PS+ W + G +         G     Q+ +L ++ V
Sbjct: 129 DKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE-FRGEHRIGGIKLRHQQWSLVMESV 187

Query: 306 QKEDAGFFVCSALSVAGSTTVRAFLQVRE--------FCVLP------------------ 339
              D G + C   +  GS      L V E           LP                  
Sbjct: 188 VPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVY 247

Query: 340 ----------KGTFTLGQPNLATGNSDLRRIAC----------------DLRETDSGLYT 373
                     K     G      G   +  +                  ++   D+G YT
Sbjct: 248 SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYT 307

Query: 374 CTASSESGETSWSASLSVEPRP 395
           C A +  G +  SA L V P  
Sbjct: 308 CLAGNSIGFSHHSAWLVVLPAE 329

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 83.9 bits (207), Expect = 9e-18
 Identities = 26/112 (23%), Positives = 37/112 (33%), Gaps = 17/112 (15%)

Query: 64  IAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG------------- 110
           + +           P++ T + GS VEF C+V  D  P I W +                
Sbjct: 215 LERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPY 274

Query: 111 ----KMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
               K         +   L + NV  +D G Y C   N +G     A L V 
Sbjct: 275 VTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL 326

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 25/143 (17%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTT 422
            +  +D G YTC   ++ G    + +L V  R     +       L  G PA     N T
Sbjct: 186 SVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPI-------LQAGLPA-----NQT 233

Query: 423 R---GSVTLG---WGEPEPR------GGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTS 470
                 V      + + +P              +G     + + L+T       +     
Sbjct: 234 AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEV- 292

Query: 471 ITVSDLKPDTSYMFIVRAENSHG 493
           +++ ++  + +  +   A NS G
Sbjct: 293 LSLHNVTFEDAGEYTCLAGNSIG 315

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  155 bits (393), Expect = 5e-43
 Identities = 47/283 (16%), Positives = 84/283 (29%), Gaps = 25/283 (8%)

Query: 72  PFPISE-PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
              I     +  V  G  V   C   G    ++ W        T   +     +L   N 
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPE-SPGSTLTTRNA 58

Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQP 190
             ++ G Y C       + S    L V      +    ++  V  G+ A+L C       
Sbjct: 59  TFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPAL 118

Query: 191 EPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLL 250
           + ++   + G    L  +       R     + + L  N    +  +N R        L 
Sbjct: 119 KDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLK 178

Query: 251 IWNHPRVN------------------RLSCFAEGSPLPSVFWTQEGSQVLMFPGNA-YGH 291
           +                         ++ C A  + +      + G   L  P N+ +  
Sbjct: 179 VNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQD 238

Query: 292 LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
            +  +   L +  V  +DAG + C A +  G+ T     QV E
Sbjct: 239 NYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE 281

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 78.5 bits (193), Expect = 3e-16
 Identities = 22/115 (19%), Positives = 36/115 (31%), Gaps = 7/115 (6%)

Query: 51  GARGALSDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG 110
             R + S   W  + +     P    EPS    + G   + VC      +   +  +   
Sbjct: 166 NGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGD 225

Query: 111 KMPT-------GRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
                              R+L +  V  QD G+Y C   N VG+ +   +  V 
Sbjct: 226 TKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVV 280

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 77.7 bits (191), Expect = 7e-16
 Identities = 41/293 (13%), Positives = 75/293 (25%), Gaps = 72/293 (24%)

Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP- 225
              +  V  GET  L C         ++ W           +   +    TL        
Sbjct: 10  SGPELVVEPGETVTLRC-----VSNGSVEWDGPISPYW---TLDPESPGSTLTTRNATFK 61

Query: 226 ---LYWNVARP-------RANLN----PRYIGRKMASLLIWNHPRVNRLSCFAEGSPL-P 270
               Y               +L               + +        L C      L  
Sbjct: 62  NTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEA-VLPCLITDPALKD 120

Query: 271 SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA-LSVAGSTTVRAF 329
           SV   +EG + ++           +      I+  +  D+  +VC   ++   ST+   +
Sbjct: 121 SVSLMREGGRQVLRKTV----YFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIW 176

Query: 330 LQVREFCVLP------------------------------------KGTFTLGQPNLATG 353
           L+V      P                                    +G   L  P  +  
Sbjct: 177 LKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDF 236

Query: 354 NSDLRRIACDLR-----ETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVH 401
             +  +    L        D+G+Y+C AS++ G  + + +  V      H  H
Sbjct: 237 QDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHHHH-HH 288

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  150 bits (379), Expect = 9e-41
 Identities = 51/317 (16%), Positives = 84/317 (26%), Gaps = 53/317 (16%)

Query: 67  EALIKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTG-RAKILDD-R 123
           +    P    E     V     V   C+V        I+W +D+ ++    +    D   
Sbjct: 3   DPFTGPH-FVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGIC 61

Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASG------- 176
           +L I     +D G+Y   +++  G    R  L       +   E       S        
Sbjct: 62  TLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE-AFKELMMEVCKKIALSATDLKIQS 120

Query: 177 --ETALLECGPPKGQPEPTLHWKKNGQFIDL----------------------------- 205
             E   L         +  ++W  NG  I                               
Sbjct: 121 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYV 180

Query: 206 --------ESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRV 257
                      K++DLS +              A        R +G     + I     +
Sbjct: 181 MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKAL 240

Query: 258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 317
             L+C   G P P V W +   + L    +        +     I GV   D+G +    
Sbjct: 241 -NLTCNVWGDPPPEVSWLKNE-KALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVV 298

Query: 318 LSVAGSTTVRAFLQVRE 334
            +  GS T    + V  
Sbjct: 299 KNKYGSETSDFTVSVFI 315

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 88.0 bits (218), Expect = 4e-19
 Identities = 39/305 (12%), Positives = 77/305 (25%), Gaps = 83/305 (27%)

Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP- 225
           E     V      LL+C     + E  + W K+ + I ++          TL        
Sbjct: 12  EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKK 71

Query: 226 ---LYWNVAR-------PRANLN---PRYIGRKMASLLIWNHPRVNRLSCFAEGSPL--- 269
              +Y  + +        R  L     + +  ++   +  +   + ++   AEG  L   
Sbjct: 72  DAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDL-KIQSTAEGIQLYSF 130

Query: 270 -------PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 322
                    V W+  GS +     +        ++  L+I      D G +V        
Sbjct: 131 VTYYVEDLKVNWSHNGSAIR--YSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKT 188

Query: 323 STTVRAFLQVREFCVLPKGTFTLGQPNL-----------------------------ATG 353
                  L  + +         L Q  +                               G
Sbjct: 189 GHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWG 248

Query: 354 N----------------SDLRRIACD-----------LRETDSGLYTCTASSESGETSWS 386
           +                 D   +  +           +   DSG Y     ++ G  +  
Sbjct: 249 DPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSD 308

Query: 387 ASLSV 391
            ++SV
Sbjct: 309 FTVSV 313

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 87.3 bits (216), Expect = 5e-19
 Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 5/125 (4%)

Query: 39  SRRSRSIFGSVLGARGALSDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGD 98
            +++  + G       A      +    E          P   T+  G  +   C V GD
Sbjct: 190 HQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGD 249

Query: 99  PLPTILWRRDDGKM-PTGRAKILDDR----SLQIENVGPQDEGLYICDVENLVGSISLRA 153
           P P + W +++  +       +  +        I  V   D G Y   V+N  GS +   
Sbjct: 250 PPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDF 309

Query: 154 SLTVH 158
           +++V 
Sbjct: 310 TVSVF 314

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 73.0 bits (179), Expect = 3e-14
 Identities = 35/235 (14%), Positives = 57/235 (24%), Gaps = 63/235 (26%)

Query: 259 RLSCFAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG--TLRIQGVQKEDAGFFVC 315
            L C          + W ++  ++      +    H  ++G  TL I    K+DAG +  
Sbjct: 25  LLKCKVANIKKETHIVWYKDEREI------SVDEKHDFKDGICTLLITEFSKKDAGIYEV 78

Query: 316 SALSVAGSTTVRAFLQV---REFCVLPKGTFTLGQPNL-----ATG-------------- 353
                 G    R  L     +E  +       L   +L     A G              
Sbjct: 79  ILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDL 138

Query: 354 ------------NSDLRRIACD----------LRETDSGLYTCTASSESGETSWSASLSV 391
                        SD  +                  D G Y             +  LS 
Sbjct: 139 KVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 198

Query: 392 EPRPGPHAVHRMPDSGLFPGPPAAPVILNTTR-------GSVTLG---WGEPEPR 436
           +     +A  +            A V+             ++ L    WG+P P 
Sbjct: 199 QAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE 253

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  152 bits (384), Expect = 9e-40
 Identities = 63/488 (12%), Positives = 138/488 (28%), Gaps = 104/488 (21%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR---SLQIE 128
              + E +   V   + +     V      + LW      +       L +R   S+ I 
Sbjct: 49  SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVIL 108

Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKG 188
            +     G Y+  +++   + ++  ++++      +       R    + AL  C   + 
Sbjct: 109 KMTETQAGEYLLFIQSEATNYTILFTVSIRN-TLLYTLRRPYFRKMENQDAL-VC-ISES 165

Query: 189 QPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLR--VRPLYWNVARPRANLNPR-YIGRK 245
            PEP + W       +    +S  + ++    L           AR     N       +
Sbjct: 166 VPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCAR-----NELGRECTR 220

Query: 246 MASLLIWNHPRVN------------RLSCFA-EGSPLPSVFWTQEGSQVL---MFPGNAY 289
           + ++ +   P+               + C A   +    + W  E   +     F  + Y
Sbjct: 221 LFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTY 280

Query: 290 GHLHVTQE-GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE-------------- 334
                        +  V + D G++ CS+      +   A + + E              
Sbjct: 281 STNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS---ALVTIVEKGFINATNSSEDYE 337

Query: 335 --------FCVLPKG-------------TFTLGQPNLATGNSDLRRIACDLRETDSGLYT 373
                   F V  K              +F   Q  L  G S + +      +   G Y 
Sbjct: 338 IDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYS-ISKF--CNHKHQPGEYI 394

Query: 374 CTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTL---GW 430
             A ++  + +   +L++                        P +L     +        
Sbjct: 395 FHAENDDAQFTKMFTLNIR---------------------RKPQVL-AEASASQASCFSD 432

Query: 431 GEPEP-----RGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFI 485
           G P P     +    +P     +     + +    V    ++S+++ +S  +    ++  
Sbjct: 433 GYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMS--EAIKGFLVK 490

Query: 486 VRAENSHG 493
             A NS G
Sbjct: 491 CCAYNSLG 498

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  142 bits (359), Expect = 2e-36
 Identities = 39/386 (10%), Positives = 81/386 (20%), Gaps = 74/386 (19%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
                        +       VC     P P + W   D +  + + +       + + +
Sbjct: 140 TLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVL 198

Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQP 190
                    C   N +G        T+  L    +       +  GE   + C       
Sbjct: 199 HELFGTDIRCCARNELGR-ECTRLFTID-LNQTPQTTLPQLFLKVGEPLWIRCKAVHVNH 256

Query: 191 EPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARP--------RANLNPRYI 242
              L W+   + ++  +   +         +R+   + +             ++      
Sbjct: 257 GFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSS-KHP-- 313

Query: 243 GRKMASLLIWNHPRVN----------------RLSCFAEGSPLPSVFWTQEGSQVLMFPG 286
             + A + I     +N                  S   +  P     WT           
Sbjct: 314 -SQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF----- 367

Query: 287 NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE------------ 334
                  +    ++      K   G ++  A +     T    L +R             
Sbjct: 368 -PCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQ 426

Query: 335 ----------------FCVLPKGT----FTLGQPNLATGNSDLRRIACDL-----RETDS 369
                            C           T G  N         +               
Sbjct: 427 ASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKG 486

Query: 370 GLYTCTASSESGETSWSASLSVEPRP 395
            L  C A +  G +  +  L+     
Sbjct: 487 FLVKCCAYNSLGTSCETILLNSPGPF 512

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  128 bits (322), Expect = 1e-31
 Identities = 42/296 (14%), Positives = 80/296 (27%), Gaps = 42/296 (14%)

Query: 70  IKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDDRS---- 124
           +   P +      +  G  +   C+    +    + W  ++  +  G    +   S    
Sbjct: 226 LNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRT 285

Query: 125 ------LQIENVGPQDEGLYICDVENLVGSISLRASLTVHLL-RDDFRAEPKDTRVASGE 177
                   + +V   D G Y C            A +T+      +     +D  +   E
Sbjct: 286 MIRILFAFVSSVARNDTGYYTCSSSKHPSQS---ALVTIVEKGFINATNSSEDYEIDQYE 342

Query: 178 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP----LYWNVARP 233
                    K  P+    W  + +    E     +    +             Y   A  
Sbjct: 343 EFCFSV-RFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISK--FCNHKHQPGEYIFHAE- 398

Query: 234 RANLNPRYIGRKMASLLIWNHPRV------NRLSCFAEGSPLPSVFWTQEGSQVLMFPG- 286
               N      KM +L I   P+V      ++ SCF++G PLPS  W +   +       
Sbjct: 399 ----NDDAQFTKMFTLNIRRKPQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEE 454

Query: 287 --------NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
                    A   +      +  +   +        C A +  G++     L    
Sbjct: 455 ITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPG 510

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 86.3 bits (213), Expect = 7e-18
 Identities = 39/332 (11%), Positives = 79/332 (23%), Gaps = 82/332 (24%)

Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLEC 183
           + +  +        Y    E+            +         E     V    +  L+ 
Sbjct: 16  NHKNNDSSVGKSSSYPMVSESPEDL-----GCALRPQSSGTVYEAAAVEVDVSASITLQV 70

Query: 184 GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWL---RVRP----LYWNVARPRAN 236
                    +  W        L      DL  R +  +   ++       Y    +    
Sbjct: 71  -LVDAPGNISCLWVFKHS--SLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQ---- 123

Query: 237 LNPRYIGRKMASLLIWNHPRV-------------NRLSCFAEGSPLPSVFWTQEGSQVLM 283
            +       + ++ I N                 + L C +E  P P V W    SQ   
Sbjct: 124 -SEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGES 182

Query: 284 FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF-LQVREF------- 335
               +   +          + + +       C A +  G    R F + + +        
Sbjct: 183 CKEESPAVV------KKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQ 236

Query: 336 ------------CVLPKG----TFTLGQPNLATGNSDLRRIAC----------------D 363
                       C           T    N A    +   ++                  
Sbjct: 237 LFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSS 296

Query: 364 LRETDSGLYTCTASSESGETSWSASLSVEPRP 395
           +   D+G YTC++S    +   SA +++  + 
Sbjct: 297 VARNDTGYYTCSSSKHPSQ---SALVTIVEKG 325

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  145 bits (367), Expect = 2e-39
 Identities = 45/283 (15%), Positives = 77/283 (27%), Gaps = 24/283 (8%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
            P       +  V  G+ V   C   G    ++ W        T          L   N 
Sbjct: 4   IPVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPPSPHWT-LYSDGSSSILSTNNA 58

Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQP 190
             Q+ G Y C         S    L V      +    ++  V   + ALL C       
Sbjct: 59  TFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVL 118

Query: 191 EPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLL 250
           E  +   +      +  +             R + +     +  A +  R +      L 
Sbjct: 119 EAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLK 178

Query: 251 IWNHPRVN------------------RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGH- 291
           +                         ++ C A    +    + Q  +  L  P  +  H 
Sbjct: 179 VQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHN 238

Query: 292 LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
               +  TL +  V  + AG + C A +V G  +   F +V E
Sbjct: 239 NRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVE 281

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 76.5 bits (188), Expect = 2e-15
 Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 7/115 (6%)

Query: 51  GARGALSDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG 110
           G R  +S      + K     P     P++   + G   + VC      +   ++ + + 
Sbjct: 166 GGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNN 225

Query: 111 KM--PTGRAKILDDR-----SLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
                  ++   ++R     +L ++ V  Q  G Y C   N+ G  S      V 
Sbjct: 226 TKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVV 280

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 73.1 bits (179), Expect = 2e-14
 Identities = 43/294 (14%), Positives = 70/294 (23%), Gaps = 71/294 (24%)

Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP- 225
              +  V  G T  L C         ++ W           +   D S   L        
Sbjct: 10  SVPELVVKPGATVTLRC-----VGNGSVEWDGP---PSPHWTLYSDGSSSILSTNNATFQ 61

Query: 226 ---LYWNVARP-------RANLN---PRYIGRKMASLLIWNHPRVNRLSCFAEGSPL-PS 271
               Y               +L    P      +A  ++    +   L C      L   
Sbjct: 62  NTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAG 121

Query: 272 VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA-LSVAGSTTVRAFL 330
           V   +   + LM   N       +      I   +   +  + CSA +      ++   L
Sbjct: 122 VSLVRVRGRPLMRHTN----YSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRL 177

Query: 331 QVREFCVLP-------------KG-TFTL------------------GQPNLATGNSDLR 358
           +V++    P             +G    +                           SD  
Sbjct: 178 KVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFH 237

Query: 359 RIACDLRET---------DSGLYTCTASSESGETSWSASLSVEPRPG--PHAVH 401
                   T          +G Y+C AS+  G+ S S    V    G   H  H
Sbjct: 238 NNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNSHHHHH 291

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  153 bits (387), Expect = 3e-39
 Identities = 65/442 (14%), Positives = 102/442 (23%), Gaps = 113/442 (25%)

Query: 71  KPFPISEP---SDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQI 127
           KPF        S      G  V    +  G P P I W ++ G        I     L I
Sbjct: 327 KPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKN-GIPLESNHTIKAGHVLTI 385

Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTVHLLR----DDFRAEPKDTRVASGETALLEC 183
             V  +D G Y   + N +        +++ +       +            G T  L C
Sbjct: 386 MEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTC 445

Query: 184 GPPKGQPEP-TLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYI 242
                 P P  +HW    +                      R +       +  +N    
Sbjct: 446 -TVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQF 504

Query: 243 ----------------------------------GRKMASLLIWNHPRVN---------- 258
                                             G ++ S  +   P +           
Sbjct: 505 ALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQ 564

Query: 259 ---RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE------------------ 297
               L C A+ S   ++ W + G Q L                                 
Sbjct: 565 ESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDI 624

Query: 298 GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDL 357
             + ++    +D G +VC A             Q+         T T    N  T   + 
Sbjct: 625 LIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVL-ERVAPTITGNLENQTTSIGES 683

Query: 358 RRIAC-------------------------------------DLRETDSGLYTCTASSES 380
             ++C                                      +R+ D GLYTC A S  
Sbjct: 684 IEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVL 743

Query: 381 GETSWSASLSVEPRPGPHAVHR 402
           G     A   +E       + R
Sbjct: 744 GCAKVEAFFIIEGAQEKTNLER 765

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  137 bits (346), Expect = 4e-34
 Identities = 69/519 (13%), Positives = 132/519 (25%), Gaps = 104/519 (20%)

Query: 69  LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDD-----R 123
           L  P    +    T+ + + ++  CR  G      LW  +                   +
Sbjct: 29  LDLPRLSIQKDILTIKANTTLQITCR--GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCK 86

Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVH----LLRDDFRAEPKDTRVASGETA 179
           +L I  V   D G Y C       +  +   +  +    +     +           +T 
Sbjct: 87  TLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTV 146

Query: 180 LLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP----LYWNVARPRA 235
           ++ C         +L  +   +    + ++    S++             + +  A+   
Sbjct: 147 VIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAK--- 203

Query: 236 NLNPRYIGRKMASLLIWNHPRVNR------------------LSCFAEGSPLPSVFWTQE 277
                   + +  +++    R+                    L+C A       + +  E
Sbjct: 204 --INDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWE 261

Query: 278 GSQVLMFPGNAYGHLHVTQEG--------TLRIQGVQKEDAGFFVCSALSVAGSTTVRAF 329
                            TQ G        TL I GV + D G + C+A S   +     F
Sbjct: 262 YPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTF 321

Query: 330 LQVREFCVLPKGTFTLGQPNLATGNS-DLRRIAC-------------------------- 362
           ++V E    P   F  G  +L      +  RI                            
Sbjct: 322 VRVHE---KPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK 378

Query: 363 --------DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPA 414
                   ++ E D+G YT   ++   +   S  +S+     P    +   S +      
Sbjct: 379 AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYG 438

Query: 415 APVILN-TTRGS---VTLGW---GEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
               L  T         + W    E E        V                    ++I 
Sbjct: 439 TTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIE 498

Query: 468 -------------STSITVSDLKPDTSYMFIVRAENSHG 493
                         T  T+     + S ++   A N  G
Sbjct: 499 VNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVG 537

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  121 bits (303), Expect = 9e-29
 Identities = 58/361 (16%), Positives = 95/361 (26%), Gaps = 67/361 (18%)

Query: 70  IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR------ 123
           I    +S      +  G  +   C    +    I +  +         K+++        
Sbjct: 223 IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 282

Query: 124 --------SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHL--LRDDFRAEPKDTRV 173
                   +L I+ V   D+GLY C   + + +      + VH                 
Sbjct: 283 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEA 342

Query: 174 ASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP----LY-- 227
             GE   +      G P P + W KNG  ++   S     +   L  + V       Y  
Sbjct: 343 TVGERVRIPA-KYLGYPPPEIKWYKNGIPLE---SNHTIKAGHVLTIMEVSERDTGNYTV 398

Query: 228 --WNVA-----RPRANLN---PRYIGRKMASLLIWNHPRVNR--LSCFAEGSPLP-SVFW 274
              N           +L    P  IG K     + ++       L+C     P P  + W
Sbjct: 399 ILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHW 458

Query: 275 TQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
             +  +      +                             A+SV        +  V +
Sbjct: 459 YWQLEEECANEPS----------------------------QAVSVTNPYPCEEWRSVED 490

Query: 335 FCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPR 394
           F    K      Q  L  G +             S LY C A ++ G      S  V   
Sbjct: 491 FQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRG 550

Query: 395 P 395
           P
Sbjct: 551 P 551

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  118 bits (296), Expect = 8e-28
 Identities = 35/304 (11%), Positives = 74/304 (24%), Gaps = 42/304 (13%)

Query: 64  IAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK--MPTGRAKILD 121
                +            T      V   C      L   L  R   K  +P G     D
Sbjct: 121 YRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWD 180

Query: 122 -DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFR---AEPKDTRVASGE 177
             +   I +      G+  C+ +    S      + V +    +    +      ++ GE
Sbjct: 181 SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGE 240

Query: 178 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANL 237
             +L C   + +    + +         +  K ++   +T     ++     +       
Sbjct: 241 KLVLNC-TARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR 299

Query: 238 -----------NPRYIGRKMASLLIWNHPRVN-----------------RLSCFAEGSPL 269
                      +     +    + +   P V                  R+     G P 
Sbjct: 300 SDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPP 359

Query: 270 PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF 329
           P + W + G  +     N      +     L I  V + D G +     +          
Sbjct: 360 PEIKWYKNGIPL---ESNHT----IKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHV 412

Query: 330 LQVR 333
           + + 
Sbjct: 413 VSLV 416

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  108 bits (271), Expect = 8e-25
 Identities = 54/343 (15%), Positives = 89/343 (25%), Gaps = 87/343 (25%)

Query: 70  IKPFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGK----------------- 111
           I    +  P D +   G+     C V   P P  I W     +                 
Sbjct: 423 IGEKSLISPVD-SYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYP 481

Query: 112 -----------------MPTGRAKILDDRS---LQIENVGPQDEGLYICDVENLVGSISL 151
                            +   +  +++ ++     +         LY C+  N VG    
Sbjct: 482 CEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGER 541

Query: 152 RASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKK-NGQFIDLESSKS 210
             S  V    +    +P        E+  L C          L W K   Q + +   + 
Sbjct: 542 VISFHVTRGPE-ITLQPDMQ-PTEQESVSLWC-TADRSTFENLTWYKLGPQPLPIHVGEL 598

Query: 211 LDLSRRTLGWL---------------------RVRP----LY-------WNVARPRANLN 238
                + L  L                              Y           R      
Sbjct: 599 PTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQ 658

Query: 239 -------PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGH 291
                     I   + +        +  +SC A G+P P + W ++   ++       G 
Sbjct: 659 LTVLERVAPTITGNLENQTTSIGESI-EVSCTASGNPPPQIMWFKDNETLV----EDSGI 713

Query: 292 LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
           +       L I+ V+KED G + C A SV G   V AF  +  
Sbjct: 714 VLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 756

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 99.4 bits (247), Expect = 8e-22
 Identities = 43/353 (12%), Positives = 79/353 (22%), Gaps = 89/353 (25%)

Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPP 186
           +++       L++C             SL +         +     + +  T  + C   
Sbjct: 1   MQSKVLLAVALWLCVETRAASVGLPSVSLDL----PRLSIQKDILTIKANTTLQITC--- 53

Query: 187 KGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPL-------YWNVARPRANLNP 239
           +GQ +    W  N    +     +          L +  +       Y    R       
Sbjct: 54  RGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYR-----ET 108

Query: 240 RYIGRKMASLLIWNHPRVN-------------------RLSCFAEGSPLPSVFWTQEGSQ 280
                    +  +  P +                     + C    S L      +   +
Sbjct: 109 DLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEK 168

Query: 281 VLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPK 340
             +  GN    +    +    I       AG   C A     S     ++ V     +  
Sbjct: 169 RFVPDGN---RISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYD 225

Query: 341 --------------GTFTL-----GQPN------------------------LATGNSDL 357
                             L      + N                             S++
Sbjct: 226 VVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM 285

Query: 358 RRIACDL-----RETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPD 405
           ++    L       +D GLYTC ASS       S  + V  +P       M  
Sbjct: 286 KKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMES 338

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 86.3 bits (213), Expect = 9e-18
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 2/97 (2%)

Query: 64  IAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL--D 121
           +     + P       + T   G  +E  C   G+P P I+W +D+  +      +L   
Sbjct: 659 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDG 718

Query: 122 DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
           +R+L I  V  +DEGLY C   +++G   + A   + 
Sbjct: 719 NRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 755

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 57.5 bits (138), Expect = 1e-08
 Identities = 41/315 (13%), Positives = 88/315 (27%), Gaps = 73/315 (23%)

Query: 230 VARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFW------TQEGSQVLM 283
           V  P  +L+   +  +   L I  +  + +++C   G       W      +++  +V  
Sbjct: 22  VGLPSVSLDLPRLSIQKDILTIKANTTL-QITC--RGQRDLDWLWPNNQSGSEQRVEVTE 78

Query: 284 FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTF 343
                +         TL I  V   D G + C       ++ +  ++Q      +   + 
Sbjct: 79  CSDGLFC-------KTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSD 131

Query: 344 TLGQPNL-------------ATGN----------------SDLRRIACDLRET------- 367
             G   +              + +                 D  RI+ D ++        
Sbjct: 132 QHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYM 191

Query: 368 --DSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSG--LFPGPPAAPVILN-TT 422
              +G+  C A            + V      + V   P  G  L  G     ++LN T 
Sbjct: 192 ISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGE---KLVLNCTA 248

Query: 423 RGS----VTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKP 478
           R      +   W  P  +      V         S+++            +++T+  +  
Sbjct: 249 RTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF---------LSTLTIDGVTR 299

Query: 479 DTSYMFIVRAENSHG 493
               ++   A +   
Sbjct: 300 SDQGLYTCAASSGLM 314

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 47.8 bits (113), Expect = 1e-05
 Identities = 28/229 (12%), Positives = 54/229 (23%), Gaps = 59/229 (25%)

Query: 302 IQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPK-------GTFTL---GQPNL- 350
           +Q         ++C     A        L +    +           T  +   GQ +L 
Sbjct: 1   MQSKVLLAVALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIKANTTLQITCRGQRDLD 60

Query: 351 -------ATGNSDLRRIACD------------LRETDSGLYTCTASSESGETSWSASLSV 391
                  +     +    C             +   D+G Y C        +     +  
Sbjct: 61  WLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQD 120

Query: 392 EPRPGPHAVHRMPDSGLFPGPPAAPVILN----TTRGSVTLGWGEPEPRGGGVAPVIGYT 447
              P   +V                V++      +  +V+L    PE R           
Sbjct: 121 YRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKR----------- 169

Query: 448 VEYFSSDLQTGWVVAAHRITSTS---ITVSDLKPDTSYMFIVRAENSHG 493
                      +V   +RI+  S    T+       + M    A+ +  
Sbjct: 170 -----------FVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDE 207

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  135 bits (341), Expect = 1e-36
 Identities = 57/150 (38%), Positives = 73/150 (48%), Gaps = 12/150 (8%)

Query: 70  IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD------DGKMPTGRAKILDDR 123
             P  +  PSD  V  G      C+  G P PTI W +       D   P     +L   
Sbjct: 8   FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67

Query: 124 SLQIENVGP-----QDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGE 177
           SL    +        DEG+Y+C   N +G   S  ASL V +LRDDFR  P D  VA GE
Sbjct: 68  SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGE 127

Query: 178 TALLECGPPKGQPEPTLHWKKNGQFIDLES 207
            A++EC PP+G PEPT+ WKK+G  +D + 
Sbjct: 128 PAVMECQPPRGHPEPTISWKKDGSPLDDKD 157

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 84.5 bits (209), Expect = 8e-19
 Identities = 49/211 (23%), Positives = 76/211 (36%), Gaps = 38/211 (18%)

Query: 153 ASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLD 212
            SL            P D  V+ GE A L C   +G+P PT+ W K G+ ++ +      
Sbjct: 1   GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPR- 58

Query: 213 LSRRTL---GWLRVRPL------------YWNVAR--------PRANLN----PRYIGRK 245
            S R L   G L    +            Y  VAR          A+L          + 
Sbjct: 59  -SHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQN 117

Query: 246 MASLLIWNHPRVNRLSCFA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQG 304
            + +++        + C    G P P++ W ++GS +     +        + G L I  
Sbjct: 118 PSDVMVAVGEPA-VMECQPPRGHPEPTISWKKDGSPL-----DDKDERITIRGGKLMITY 171

Query: 305 VQKEDAGFFVCSALSVAGSTTVR-AFLQVRE 334
            +K DAG +VC   ++ G      A L V E
Sbjct: 172 TRKSDAGKYVCVGTNMVGERESEVAELTVLE 202

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 82.9 bits (205), Expect = 3e-18
 Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 66  KEALIKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTG-RAKILDDR 123
           + A+++      PSD  V  G      C+   G P PTI W++D   +        +   
Sbjct: 106 EVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG 165

Query: 124 SLQIENVGPQDEGLYICDVENLVGSI-SLRASLTVH 158
            L I      D G Y+C   N+VG   S  A LTV 
Sbjct: 166 KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVL 201

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 75.2 bits (185), Expect = 1e-15
 Identities = 40/179 (22%), Positives = 61/179 (34%), Gaps = 44/179 (24%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGV-----QKEDAGFF 313
            L+C AEG P P++ W + G +V     +   H  +   G+L    +      + D G +
Sbjct: 28  TLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY 87

Query: 314 VCSALSVAGSTTVR-AFLQVREF----------------------CVLPKGT-------- 342
           VC A +  G      A L+V                         C  P+G         
Sbjct: 88  VCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWK 147

Query: 343 -----FTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGE-TSWSASLSVEPRP 395
                       +      L  I    R++D+G Y C  ++  GE  S  A L+V  RP
Sbjct: 148 KDGSPLDDKDERITIRGGKL-MIT-YTRKSDAGKYVCVGTNMVGERESEVAELTVLERP 204

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  134 bits (339), Expect = 2e-36
 Identities = 68/155 (43%), Positives = 81/155 (52%), Gaps = 9/155 (5%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG----RAKILDDRSL- 125
            P  I  P+D  V         C+V G P PTI W +D   + T           D +L 
Sbjct: 9   SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68

Query: 126 ---QIENVGPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALL 181
               ++    QD G Y C  +N VG   S  ASL + +LRDDFR EPKDTRVA GETALL
Sbjct: 69  FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALL 128

Query: 182 ECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRR 216
           ECGPPKG PEPTL W K+G  +D   + S   S R
Sbjct: 129 ECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSR 163

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 89.9 bits (223), Expect = 1e-20
 Identities = 44/198 (22%), Positives = 73/198 (36%), Gaps = 29/198 (14%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKS--LDLSRRTLGWL 221
               P D  V   E A L C   +G+PEPT+ W K+G+ +     KS  +      L + 
Sbjct: 12  IIEHPTDLVVKKNEPATLNCKV-EGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFY 70

Query: 222 RVRP--------LYWNVAR--------PRANLN----PRYIGRKMASLLIWNHPRVNRLS 261
           R            YW VA+          A+L           +     +        L 
Sbjct: 71  RTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETA-LLE 129

Query: 262 CF-AEGSPLPSVFWTQEGSQVLMFPGNAY---GHLHVTQEGTLRIQGVQKEDAGFFVCSA 317
           C   +G P P++ W ++G  +      ++     + +   G L I  V+  D G + C A
Sbjct: 130 CGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIA 189

Query: 318 LSVAGS-TTVRAFLQVRE 334
            ++ G+  +  A L V+ 
Sbjct: 190 QNLVGTRESSYAKLIVQV 207

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 84.9 bits (210), Expect = 6e-19
 Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 11/102 (10%)

Query: 68  ALIKPFPISEPSDATVLSGSVVEFVC-RVGGDPLPTILWRRDD---------GKMPTGRA 117
           A+++     EP D  V  G      C    G P PT++W +D              + R 
Sbjct: 105 AVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRV 164

Query: 118 KILDDRSLQIENVGPQDEGLYICDVENLVGSI-SLRASLTVH 158
           +I+D  +L I NV P DEG Y C  +NLVG+  S  A L V 
Sbjct: 165 RIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 69.9 bits (171), Expect = 8e-14
 Identities = 41/192 (21%), Positives = 65/192 (33%), Gaps = 51/192 (26%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTL----RIQGVQKEDAGFFV 314
            L+C  EG P P++ W ++G  V      +  H    ++G L     +QG +++D G + 
Sbjct: 28  TLNCKVEGKPEPTIEWFKDGEPVSTNEKKS--HRVQFKDGALFFYRTMQGKKEQDGGEYW 85

Query: 315 CSALSVAGST-TVRAFLQVREF----------------------CVLPKGT--------- 342
           C A +  G   +  A LQ+                         C  PKG          
Sbjct: 86  CVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIK 145

Query: 343 --FTLGQPNLATGNSDLR---------RIACDLRETDSGLYTCTASSESGE-TSWSASLS 390
               L      +  +  R          I+ ++   D G Y C A +  G   S  A L 
Sbjct: 146 DGVPLDDLKAMSFGASSRVRIVDGGNLLIS-NVEPIDEGNYKCIAQNLVGTRESSYAKLI 204

Query: 391 VEPRPGPHAVHR 402
           V+ +   H  H 
Sbjct: 205 VQVKAAAHHHHH 216

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  136 bits (344), Expect = 9e-36
 Identities = 46/318 (14%), Positives = 81/318 (25%), Gaps = 56/318 (17%)

Query: 72  PFPISEPSDATVLSGSVVEFVC-------RVGGDPLPTILWRRDDGKMPTGRAK----IL 120
            F          L G  V   C            P   + W ++D        +      
Sbjct: 19  RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWA 78

Query: 121 DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAE-PKDTRVASGETA 179
            D +L +     +D G Y+C   N      +   L V    D F         +    + 
Sbjct: 79  QDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSG 138

Query: 180 LLEC----GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRR-TLGWLRVRP----LYWNV 230
           +L C       + + +  + W K+   +D ++ K L +     L    V       Y  V
Sbjct: 139 VLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCV 198

Query: 231 ARPRANLNPRYIGRKMASLLIWNHPRVN-------------------RLSC---FAEGSP 268
                    +Y   +   L I                           + C      G+P
Sbjct: 199 LTFAHE-GQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTP 257

Query: 269 LPSVFWTQEGSQVLMFPGNA-----YGHLHVTQEG------TLRIQGVQKEDAGF-FVCS 316
           L ++ W       +                 ++         L    V +ED    F C 
Sbjct: 258 LTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCV 317

Query: 317 ALSVAGSTTVRAFLQVRE 334
             +     T+R  ++   
Sbjct: 318 VHNTLSFQTLRTTVKEHH 335

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 91.3 bits (226), Expect = 3e-20
 Identities = 24/153 (15%), Positives = 40/153 (26%), Gaps = 19/153 (12%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCR-----VGGDPLPTILWRRDDGKMPTGRAKIL---DD 122
             F         +   +    VC              I W +D   +     K L     
Sbjct: 120 DAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGT 179

Query: 123 RSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDD--------FRAEPKDTRVA 174
             L + +V  +D G Y C +           + ++ L              +  K    +
Sbjct: 180 THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISAS 239

Query: 175 SGETALLEC--GPPKGQPEPTLHW-KKNGQFID 204
            G    + C      G P  T+ W   N   I+
Sbjct: 240 LGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIE 272

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 84.0 bits (207), Expect = 1e-17
 Identities = 39/288 (13%), Positives = 74/288 (25%), Gaps = 61/288 (21%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
               +A  SP  ++ W +  S                Q+G L +    +ED+G +VC+  
Sbjct: 44  PYWLWASVSPRINLTWHKNDSART--VPGEEETRMWAQDGALWLLPALQEDSGTYVCTTR 101

Query: 319 SVAGSTTVRAFLQVRE--FCVLPKG----TFTLGQP---------NLATGN--------- 354
           + +    +   L+V E     LP        TL                           
Sbjct: 102 NASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYK 161

Query: 355 -------SDLRRIAC---------DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPH 398
                   + + ++          D+   D+G Y C  +       ++ + S+E R    
Sbjct: 162 DSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKK 221

Query: 399 AVHRMPDSGLFPGPPA-------APVILNTTRGSVTLGWGEPEP-----RGGGVAPVIGY 446
               +P       P         + + +      V LG G P                 Y
Sbjct: 222 KEETIPV---IISPLKTISASLGSRLTIPC---KVFLGTGTPLTTMLWWTANDTHIESAY 275

Query: 447 TVEYFSSDLQTGWVVAAHRITSTSITVSDLKP-DTSYMFIVRAENSHG 493
                +   +  +           +    +   D    F     N+  
Sbjct: 276 PGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLS 323

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 69.7 bits (170), Expect = 5e-13
 Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 21/118 (17%)

Query: 62  KLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVG---GDPLPTILWRRDDGKMP----- 113
           ++  K+    P  IS     +   GS +   C+V    G PL T+LW   +         
Sbjct: 217 RIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYP 276

Query: 114 ------TGRAKILDD------RSLQIENVGPQDEGL-YICDVENLVGSISLRASLTVH 158
                   R +  ++        L  + V  +D  + + C V N +   +LR ++  H
Sbjct: 277 GGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKEH 334

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  134 bits (339), Expect = 2e-35
 Identities = 42/308 (13%), Positives = 77/308 (25%), Gaps = 50/308 (16%)

Query: 74  PISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAK----ILDDRSLQIE 128
              E       +  +    C +   +   TI W +DD K P    +          L   
Sbjct: 8   EREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFV 67

Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPK---DTRVASGETALLEC-- 183
               +D G Y C V N    + ++ S        +     +     ++       L C  
Sbjct: 68  PAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPY 127

Query: 184 ---GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP--------------- 225
                 +    P L W K+ + + L++       +  L  + V                 
Sbjct: 128 MEFFKNENNELPKLQWYKDCKPLLLDNIHFS-GVKDRLIVMNVAEKHRGNYTCHASYTYL 186

Query: 226 ---------LYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQ 276
                    + +          P  +     ++ +    ++  L C   G      +W  
Sbjct: 187 GKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQ-LICNVTGQLSDIAYWKW 245

Query: 277 EGSQVLMFPG----------NAYGHLHVTQEGTLRIQGVQKED-AGFFVCSALSVAGSTT 325
            GS +               N       T    L I  ++       F C A +  G   
Sbjct: 246 NGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDA 305

Query: 326 VRAFLQVR 333
               L   
Sbjct: 306 AYIQLIYP 313

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 94.8 bits (235), Expect = 2e-21
 Identities = 24/159 (15%), Positives = 42/159 (26%), Gaps = 17/159 (10%)

Query: 64  IAKEALIKPFPISEPSDATVLSGSVVEFVC------RVGGDPLPTILWRRDDGKMPTGRA 117
             +      +         +        VC      +   + LP + W +D   +     
Sbjct: 96  FVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNI 155

Query: 118 KILDDR-SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAE--------- 167
                +  L + NV  +  G Y C             +  +  +  +             
Sbjct: 156 HFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPA 215

Query: 168 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLE 206
            +   V  G    L C    GQ     +WK NG  ID +
Sbjct: 216 NETMEVDLGSQIQLIC-NVTGQLSDIAYWKWNGSVIDED 253

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 68.2 bits (166), Expect = 1e-12
 Identities = 42/286 (14%), Positives = 80/286 (27%), Gaps = 60/286 (20%)

Query: 260 LSCFAEGSP-LPSVFWTQEGSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSA 317
             C    +    ++ W ++ S+    P +      + Q    L     + ED+G + C  
Sbjct: 25  RPCPLNPNEHKGTITWYKDDSKT---PVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVV 81

Query: 318 LSVAGSTTVRAFLQVRE----FCVLPK----------GTFTLGQPNL----ATGN----- 354
            + +    ++   +  E     C   +          G   L  P +       N     
Sbjct: 82  RNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKL 141

Query: 355 ----------SDLRRIAC--------DLRETDSGLYTCTASSESGETSWSASLSVEPRPG 396
                      D    +         ++ E   G YTC AS       +  +  +E    
Sbjct: 142 QWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITL 201

Query: 397 PHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLG---WGEPEPR------GGGVAPVIGYT 447
                  P   + P      V L +    + L     G+          G  +       
Sbjct: 202 EENKPTRPVI-VSPANETMEVDLGSQ---IQLICNVTGQLSDIAYWKWNGSVIDEDDPVL 257

Query: 448 VEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHG 493
            E + S         +  IT  +I+  + +    + F   A+N+HG
Sbjct: 258 GEDYYSVENPANKRRSTLITVLNISEIESR-FYKHPFTCFAKNTHG 302

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 66.3 bits (161), Expect = 6e-12
 Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 18/115 (15%)

Query: 62  KLIAKEALIKPFPISEPSD-ATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL 120
             + +    +P  +S  ++   V  GS ++ +C V G       W+ +   +      + 
Sbjct: 199 ITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLG 258

Query: 121 DDRS----------------LQIENVGPQD-EGLYICDVENLVGSISLRASLTVH 158
           +D                  L I  +  +  +  + C  +N  G  +    L   
Sbjct: 259 EDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 313

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  139 bits (351), Expect = 2e-35
 Identities = 44/405 (10%), Positives = 86/405 (21%), Gaps = 84/405 (20%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK--MPTGRAKILDDRSLQIEN 129
                          +     C +    +     +   GK      R        + I++
Sbjct: 115 AKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKS 174

Query: 130 VGP-QDEGLYICDVENLVGS-ISLRASLTVH---LLRDDFRAEPKDTRVASGETALLECG 184
           V          C V+    S +S +  L V                  +  GE   + C 
Sbjct: 175 VKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCT 234

Query: 185 PPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRT----LGWLRVRPL-------YWNVARP 233
                      WK+      L+   +              L +          +   A  
Sbjct: 235 IKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYAN- 293

Query: 234 RANLNPRYIGRKMASLLIWNHPRVN-----------------RLSCFAEGSPLPS-VFWT 275
               N         +L + +   +N                  L    E  P P    W 
Sbjct: 294 ----NTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWI 349

Query: 276 QEGSQVLM---FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332
                          +    ++     L +  ++  + G +     +   +  +   + V
Sbjct: 350 YMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYV 409

Query: 333 RE---------------FC-------------------------VLPKGTFTLGQPNLAT 352
                             C                         VLP    TL       
Sbjct: 410 NTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPF 469

Query: 353 GNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGP 397
           G   ++          +G   C A ++ G+TS   + + +     
Sbjct: 470 GKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKE 514

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  129 bits (325), Expect = 6e-32
 Identities = 44/307 (14%), Positives = 79/307 (25%), Gaps = 48/307 (15%)

Query: 70  IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPT-ILWRRDDGKMP---------TGRAKI 119
             P      +   +  G      C +          W+R++ +            G    
Sbjct: 210 AVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNY 269

Query: 120 LDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLR--DDFRAEPKDTRVASGE 177
               +L I +    D G+++C   N  GS ++  +L V      + F        V  GE
Sbjct: 270 ERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGE 329

Query: 178 TALLECGPPKGQPEPTL-HWKKNGQFIDLESSKSLDLSRR-------TLGWLRVRP---- 225
              L     +  P+P    W    +    +                  L   R++     
Sbjct: 330 NVDLIV-EYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGG 388

Query: 226 LYWNVARPRANLNPRYIGRKMASLLIWNHPRV--------NRLSCFAEGSPLPSVFWTQE 277
            Y  +       N         ++ +   P +          L C A G P P++ W   
Sbjct: 389 TYTFLVS-----NSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFC 443

Query: 278 GSQVL----------MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR 327
                          +   N+ G           I     +  G   C A +  G T+  
Sbjct: 444 PGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAY 503

Query: 328 AFLQVRE 334
                + 
Sbjct: 504 FNFAFKG 510

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  125 bits (315), Expect = 1e-30
 Identities = 53/399 (13%), Positives = 106/399 (26%), Gaps = 81/399 (20%)

Query: 64  IAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR 123
           ++      P      SD  V  G  +  +C   G     + W  +               
Sbjct: 29  VSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEI----LDETNENKQN 80

Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLEC 183
               E     + G Y C  ++ + +      + V      F    +          L+ C
Sbjct: 81  EWITEKAEATNTGKYTCTNKHGLSN---SIYVFVRDPAKLFL-VDRSLYGKEDNDTLVRC 136

Query: 184 GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLY---------------- 227
                +          G+ +  +     D  +  +    V+  Y                
Sbjct: 137 PLTDPEVTNYSLKGCQGKPLPKDLRFIPD-PKAGIMIKSVKRAYHRLCLHCSVDQEGKSV 195

Query: 228 ----WNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLP-SVFWTQEGSQVL 282
               + +    A      +    AS L+        ++C  +         W +E SQ  
Sbjct: 196 LSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFT-VTCTIKDVSSSVYSTWKRENSQTK 254

Query: 283 M---FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE---FC 336
           +   +    +G  +  ++ TL I   +  D+G F+C A +  GS  V   L+V +     
Sbjct: 255 LQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFIN 314

Query: 337 VLPKGTFTL----------------------------GQPNLATGNSDLRRIA------- 361
           + P    T+                             +          +          
Sbjct: 315 IFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYV 374

Query: 362 -----CDLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
                  L+ T+ G YT   S+     + + ++ V  +P
Sbjct: 375 SELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKP 413

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 70.9 bits (173), Expect = 4e-13
 Identities = 37/325 (11%), Positives = 75/325 (23%), Gaps = 76/325 (23%)

Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHLLRDD---FRAEPKDTRVASGETALLECGPPK 187
           G +    ++C +  L+   +  +  +V               D  V  G+   L C    
Sbjct: 3   GARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLC---- 58

Query: 188 GQPEPTLHWKKNGQFIDLE-SSKSLDLSRRTL---GWLRVRPLYW----NVARPRANLN- 238
                 + W         E         +      G       Y     +       +  
Sbjct: 59  -TDPGFVKWTFEILDETNENKQNEWITEKAEATNTGK------YTCTNKHGLSNSIYVFV 111

Query: 239 --PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 296
             P  +     SL          + C      + +        + L              
Sbjct: 112 RDPAKLFLVDRSLYGKEDNDT-LVRCPLTDPEVTNYSLKGCQGKPLP----KDLRFIPDP 166

Query: 297 EGTLRIQGVQK-EDAGFFVCSALSVAGS-TTVRAFLQVR--------------EFCVLPK 340
           +  + I+ V++        CS      S  + +  L+VR               + +   
Sbjct: 167 KAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREG 226

Query: 341 GTFTL------------------GQPNLATGNSDLRRIAC------------DLRETDSG 370
             FT+                            +                    R  DSG
Sbjct: 227 EEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSG 286

Query: 371 LYTCTASSESGETSWSASLSVEPRP 395
           ++ C A++  G  + + +L V  + 
Sbjct: 287 VFMCYANNTFGSANVTTTLEVVDKG 311

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 22/179 (12%), Positives = 38/179 (21%), Gaps = 45/179 (25%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           RL C   G     V WT E                         +  +  + G + C+  
Sbjct: 55  RLLCTDPGF----VKWTFEILDETNENKQ----------NEWITEKAEATNTGKYTCTNK 100

Query: 319 SVAGSTTVRAFLQVREFCVLPKG-TFTLGQPNL----ATG---------NSDLRRIACDL 364
               ++         +  ++ +          L     T              + +  DL
Sbjct: 101 HGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDL 160

Query: 365 RET----------------DSGLYTCTASSESGE-TSWSASLSVEPRPGPHAVHRMPDS 406
           R                        C+   E     S    L V P      V  +  +
Sbjct: 161 RFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKA 219

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  128 bits (324), Expect = 2e-34
 Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 13/146 (8%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR-----SLQIEN 129
              P D T +SG V  F+C+  GDP P I+W +   K+   R ++++        L+I+ 
Sbjct: 10  TRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQP 69

Query: 130 VG-PQDEGLYICDVENLVGSISLRASLTVHLLRD------DFRAEPKDTRVASGETALLE 182
           +  P+DE +Y C   N VG IS+   LTV                P+   V    TA + 
Sbjct: 70  LRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATML 129

Query: 183 CGPPKGQPEPTLHWKKNGQFIDLESS 208
           C    G P+P + W K+   +D  ++
Sbjct: 130 C-AASGNPDPEITWFKDFLPVDTSNN 154

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  101 bits (252), Expect = 1e-24
 Identities = 44/202 (21%), Positives = 70/202 (34%), Gaps = 37/202 (18%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
           F   P D    SG  A   C    G P P + W K G+ +  +  + ++    +   LR+
Sbjct: 9   FTRTPVDQTGVSGGVASFICQA-TGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRI 67

Query: 224 RPL--------YWNVARPRANLNPRYIGRKMASLLIWNHPRVN----------------- 258
           +PL        Y  VA      N          L +    ++                  
Sbjct: 68  QPLRTPRDEAIYECVAS-----NNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVER 122

Query: 259 ----RLSCFAEGSPLPSVFWTQEGSQVLMFPGNA-YGHLHVTQEGTLRIQGVQKEDAGFF 313
                + C A G+P P + W ++   V     N     L     G L+I+  ++ D G +
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKY 182

Query: 314 VCSALSVAGST-TVRAFLQVRE 334
            C A + AG+  +  A L VR 
Sbjct: 183 ECVATNSAGTRYSAPANLYVRG 204

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 78.7 bits (194), Expect = 8e-17
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 10/105 (9%)

Query: 64  IAKEALIKPFP--ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG------ 115
           + ++ + + FP     P    V        +C   G+P P I W +D   + T       
Sbjct: 99  LREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRI 158

Query: 116 -RAKILDDRSLQIENVGPQDEGLYICDVENLVGS-ISLRASLTVH 158
            + +     +LQIE     D+G Y C   N  G+  S  A+L V 
Sbjct: 159 KQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 203

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 77.9 bits (192), Expect = 1e-16
 Identities = 43/193 (22%), Positives = 68/193 (35%), Gaps = 55/193 (28%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT---LRIQGVQ-KEDAGFFV 314
              C A G P P + W ++G +V          +    +G+   LRIQ ++   D   + 
Sbjct: 25  SFICQATGDPRPKIVWNKKGKKVSNQR----FEVIEFDDGSGSVLRIQPLRTPRDEAIYE 80

Query: 315 CSALSVAGSTTVRAFLQVREFCVLPKG-----------------TFTL-----GQPN--- 349
           C A +  G  +V   L V     +P+G                 T T+     G P+   
Sbjct: 81  CVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEI 140

Query: 350 --------LATGNSDLR------------RIACDLRETDSGLYTCTASSESGET-SWSAS 388
                   + T N++ R            +I     E+D G Y C A++ +G   S  A+
Sbjct: 141 TWFKDFLPVDTSNNNGRIKQLRSESIGALQIE-QSEESDQGKYECVATNSAGTRYSAPAN 199

Query: 389 LSVEPRPGPHAVH 401
           L V      H  H
Sbjct: 200 LYVRGTKHHHHHH 212

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 21/97 (21%), Positives = 27/97 (27%), Gaps = 24/97 (24%)

Query: 350 LATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLF 409
              G+  + RI       D  +Y C AS+  GE S S  L+V                  
Sbjct: 57  FDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLRED-------------- 102

Query: 410 PGPPAAPVILNT-TRGSVTLG---------WGEPEPR 436
             P   P I        V             G P+P 
Sbjct: 103 QIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPE 139

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  128 bits (322), Expect = 4e-34
 Identities = 30/160 (18%), Positives = 47/160 (29%), Gaps = 13/160 (8%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM------------PTGRAK 118
           K    +  SD  V     ++  C   G   P + W+   G              P     
Sbjct: 1   KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60

Query: 119 ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH-LLRDDFRAEPKDTRVASGE 177
                 +   +V  +D G Y C V    G      S+ +  L+          + V  G 
Sbjct: 61  TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGN 120

Query: 178 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRT 217
            A+L C    G P     W K+G  +    +K       +
Sbjct: 121 RAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNS 160

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 80.8 bits (199), Expect = 2e-17
 Identities = 31/204 (15%), Positives = 53/204 (25%), Gaps = 39/204 (19%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNG----QFIDLESSKSLDLSRRTL- 218
                 D +V   E+  L C    G   P + WK         +   S  +   + R   
Sbjct: 4   VYTAQSDVQVPENESIKLTC-TYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF 62

Query: 219 --GWLRVRPL-------YWNVARPRANLNPRYIGRKMASLLIWNHPRVN----------- 258
               +    +       Y  +         +  G     L +   P              
Sbjct: 63  SSSGITFSSVTRKDNGEYTCMVS---EEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIG 119

Query: 259 ---RLSCFA-EGSPLPSVFWTQEGSQVLMFPGNAY------GHLHVTQEGTLRIQGVQKE 308
               L+C   +GSP     W ++G  +L                   + G L    V   
Sbjct: 120 NRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF 179

Query: 309 DAGFFVCSALSVAGSTTVRAFLQV 332
           D+G + C A +  G+        +
Sbjct: 180 DSGEYYCQAQNGYGTAMRSEAAHM 203

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 73.1 bits (179), Expect = 6e-15
 Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 13/103 (12%)

Query: 69  LIKPFPISEPSDATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKMPTGRAK--------- 118
           L+ P   +    ++V  G+     C    G P     W +D   M T  AK         
Sbjct: 102 LVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSS 161

Query: 119 ---ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
                    L  + V   D G Y C  +N  G+     +  + 
Sbjct: 162 FTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 204

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 72.7 bits (178), Expect = 1e-14
 Identities = 24/188 (12%), Positives = 38/188 (20%), Gaps = 51/188 (27%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMF------PGNAYGHLHVTQEGTLRIQGVQKEDAGF 312
           +L+C   G   P V W                    Y          +    V ++D G 
Sbjct: 20  KLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGE 79

Query: 313 FVCSALSVAGSTTVRAFLQVR-----EFCVLPK-------GTFTL--------------- 345
           + C      G       + +          +             L               
Sbjct: 80  YTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSW 139

Query: 346 ---GQPNLATGNSDLRRIAC---------------DLRETDSGLYTCTASSESGETSWSA 387
              G   L       R                    +   DSG Y C A +  G    S 
Sbjct: 140 FKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSE 199

Query: 388 SLSVEPRP 395
           +  ++   
Sbjct: 200 AAHMDAVE 207

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score =  128 bits (322), Expect = 6e-34
 Identities = 43/249 (17%), Positives = 75/249 (30%), Gaps = 80/249 (32%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            ++C     P  ++ W ++G  +   P + Y ++ +    +                   
Sbjct: 37  NITCEVFAYPSATISWFRDGQLL---PSSNYSNIKIYNTPS------------------- 74

Query: 319 SVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASS 378
                    ++L+V                                 E D G Y CTA +
Sbjct: 75  --------ASYLEVT-----------------------------PDSENDFGNYNCTAVN 97

Query: 379 ESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGG 438
             G+ S    L     P                 P+   +   +  +  + + EPE  GG
Sbjct: 98  RIGQESLEFILVQADTPSS---------------PSIDQVEPYSS-TAQVQFDEPEATGG 141

Query: 439 GVAPVIGYTVEY---FSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLG 495
              P++ Y  E+         + W  A        +T+  LKP+T+Y   + A N  GLG
Sbjct: 142 --VPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLG 199

Query: 496 IPSPVSPIT 504
             S  S   
Sbjct: 200 EISAASEFK 208

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 74.9 bits (184), Expect = 2e-15
 Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 7/99 (7%)

Query: 65  AKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILD 121
               +  P  +  P       G+ V   C V   P  TI W RD   +P+      KI +
Sbjct: 13  RGSHMYAPK-LQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYN 71

Query: 122 DRS---LQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
             S   L++      D G Y C   N +G  SL   L  
Sbjct: 72  TPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQ 110

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 12/74 (16%), Positives = 20/74 (27%), Gaps = 9/74 (12%)

Query: 136 GLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLH 195
             Y      LV   S   +  +          P       G    + C      P  T+ 
Sbjct: 1   ATYAAASSALVPRGSHMYAPKLQG--------PVAVYTWEGNQVNITC-EVFAYPSATIS 51

Query: 196 WKKNGQFIDLESSK 209
           W ++GQ +   +  
Sbjct: 52  WFRDGQLLPSSNYS 65

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  127 bits (320), Expect = 7e-34
 Identities = 35/140 (25%), Positives = 52/140 (37%), Gaps = 11/140 (7%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT--GRAKIL----DDRSLQIE 128
             E  +  V   S    VC+V G P P + W R   ++     + +I         L I 
Sbjct: 8   KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIA 67

Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVH----LLRDDFRAEPKDTRVASGETALLECG 184
           +V   D  +Y     N  GS+S  ASL V     +                GE   ++  
Sbjct: 68  SVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKI- 126

Query: 185 PPKGQPEPTLHWKKNGQFID 204
           P  G+P+P + W+K    ID
Sbjct: 127 PFSGKPDPVITWQKGQDLID 146

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 90.9 bits (226), Expect = 3e-21
 Identities = 39/199 (19%), Positives = 63/199 (31%), Gaps = 36/199 (18%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK----SLDLSRRTLG 219
           F+ E ++  V     A L C    G P+P + W + G+ I  +  K            L 
Sbjct: 7   FKEELRNLNVRYQSNATLVC-KVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI 65

Query: 220 WLRVRP----LYW----------------NVARPRANLNPRYIGRKMASLLIWNHPRVNR 259
              V      +Y                  V  P     P+ +   M ++       V  
Sbjct: 66  IASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTL-EGMGAVHALRGEVV-S 123

Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLR----IQGVQKEDAGFFVC 315
           +     G P P + W +    +        GH  V    +        GV+++DAGF+V 
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLI--DNN---GHYQVIVTRSFTSLVFPNGVERKDAGFYVV 178

Query: 316 SALSVAGSTTVRAFLQVRE 334
            A +  G       L V +
Sbjct: 179 CAKNRFGIDQKTVELDVAD 197

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 87.5 bits (217), Expect = 5e-20
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 5/98 (5%)

Query: 65  AKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDR 123
               +  P  +        L G VV       G P P I W++    +   G  +++  R
Sbjct: 98  VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR 157

Query: 124 S----LQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
           S    +    V  +D G Y+   +N  G       L V
Sbjct: 158 SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 81.7 bits (202), Expect = 5e-18
 Identities = 30/174 (17%), Positives = 50/174 (28%), Gaps = 40/174 (22%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            L C   G P P V W ++G +++                 L I  V  +DA  +   A 
Sbjct: 23  TLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82

Query: 319 SVAGSTTVRAFLQV---------------REFCVLPKGTFTL-----GQPN--------- 349
           +  GS +  A L+V                    L     ++     G+P+         
Sbjct: 83  NQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQ 142

Query: 350 -----------LATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVE 392
                      + T +         +   D+G Y   A +  G    +  L V 
Sbjct: 143 DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  123 bits (311), Expect = 1e-32
 Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 6/143 (4%)

Query: 65  AKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT--GRAKILDD 122
           A++    P   +       L   V  F+C V   P P I W R+   +     R  I ++
Sbjct: 1   AEKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIREN 60

Query: 123 RS-LQIENVGPQDEGLYICDVENLVG-SISLRASLTVHLLRDDFRAEPKDTRVASGETAL 180
              L I +V   D+G+Y C   N VG ++    +L V  ++      P + ++  G  A+
Sbjct: 61  GQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK-MKPKITRPPINVKIIEGLKAV 119

Query: 181 LECGPPKGQPEPTLHWKKNGQFI 203
           L C    G P+P++ W K    +
Sbjct: 120 LPC-TTMGNPKPSVSWIKGDSAL 141

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 98.3 bits (245), Expect = 8e-24
 Identities = 45/192 (23%), Positives = 71/192 (36%), Gaps = 30/192 (15%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK-SLDLSRRTLGWLR 222
                +       E A   C   +  P+P + W +N   I L  ++ S+  + + L  L 
Sbjct: 10  ITTPLETVDALVEEVATFMC-AVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILS 68

Query: 223 VRP----LYWNVARPRANLNPRYIGRKMASLLIWNHPRVNR--------------LSCFA 264
           V      +Y   A                +L +   P++ R              L C  
Sbjct: 69  VEDSDDGIYCCTANNGV----GGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTT 124

Query: 265 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS- 323
            G+P PSV W +  S +          + V + G+LRI  VQKEDAG + C A +  G+ 
Sbjct: 125 MGNPKPSVSWIKGDSAL-----RENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTA 179

Query: 324 TTVRAFLQVREF 335
            +    L+V  F
Sbjct: 180 YSKLVKLEVEVF 191

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 96.3 bits (240), Expect = 4e-23
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 69  LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDRSLQI 127
            +KP     P +  ++ G      C   G+P P++ W + D  +    R  +L+  SL+I
Sbjct: 98  KMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRI 157

Query: 128 ENVGPQDEGLYICDVENLVGSI-SLRASLTVHLL 160
            NV  +D G Y C  +N +G+  S    L V + 
Sbjct: 158 HNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVF 191

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 34/170 (20%), Positives = 52/170 (30%), Gaps = 42/170 (24%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG-TLRIQGVQKEDAGFFVCSA 317
              C  E  P P + WT+    + +F         + + G  L I  V+  D G + C+A
Sbjct: 26  TFMCAVESYPQPEISWTRNKILIKLFDT----RYSIRENGQLLTILSVEDSDDGIYCCTA 81

Query: 318 LSVAGSTTVR-AFLQVRE---FCVLPK-------GTFTL-----------------GQPN 349
            +  G        LQV+        P            L                     
Sbjct: 82  NNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSAL 141

Query: 350 LATG------NSDLRRIACDLRETDSGLYTCTASSESGE-TSWSASLSVE 392
                     +  L RI  ++++ D+G Y C A +  G   S    L VE
Sbjct: 142 RENSRIAVLESGSL-RIH-NVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  124 bits (313), Expect = 1e-32
 Identities = 37/159 (23%), Positives = 55/159 (34%), Gaps = 21/159 (13%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVG 131
                 P    VL+G  V+  CR  G P     W + + ++P G         L    V 
Sbjct: 19  SKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN-----TSELIFNAVH 73

Query: 132 PQDEGLYICDVENLVGS-ISLRASLTVHLLRDD--------------FRAEPKDTRVASG 176
            +D G Y+C V N      S  + L V  + +                  EP   ++  G
Sbjct: 74  VKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPG 133

Query: 177 ETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR 215
            T +L+C    G P P   W KN   +  E+ K   +  
Sbjct: 134 STLVLQC-VAVGSPIPHYQWFKNELPLTHETKKLYMVPY 171

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 89.6 bits (222), Expect = 2e-20
 Identities = 33/211 (15%), Positives = 56/211 (26%), Gaps = 36/211 (17%)

Query: 146 VGSISLRASLTVHLLRD--DFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 203
           +GS       +  L+         P+   V +G+   L C    G P     W K  + I
Sbjct: 1   MGSSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCC-RATGHPFVQYQWFKMNKEI 59

Query: 204 DLESSKSLDLSRRT--------------LGWLRVRPLYWNVARPRANLNPRYIGRKMASL 249
              ++  L  +                   +   +    +V     +      G   + L
Sbjct: 60  PNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKL 119

Query: 250 LIWNHPRVN--------RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLR 301
            I   P            L C A GSP+P   W +               L    +    
Sbjct: 120 QICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELP-----------LTHETKKLYM 168

Query: 302 IQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332
           +  V  E  G + C   +   S   +    +
Sbjct: 169 VPYVDLEHQGTYWCHVYNDRDSQDSKKVEII 199

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 83.4 bits (206), Expect = 2e-18
 Identities = 22/140 (15%), Positives = 47/140 (33%), Gaps = 12/140 (8%)

Query: 39  SRRSRSIFGSVLGARGALSDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGD 98
              S+     V      + +   + +   +  K     EP+   ++ GS +   C   G 
Sbjct: 90  FEFSQWSQLDVC----DIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGS 145

Query: 99  PLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSI-SLRASLTV 157
           P+P   W +++  +          +   +  V  + +G Y C V N   S  S +  + +
Sbjct: 146 PIPHYQWFKNELPLTHE-----TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIII 200

Query: 158 HLLRDDFRAEPKDTRVASGE 177
             L       P +    + +
Sbjct: 201 DELN--NLGHPDNKEQTTDQ 218

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 69.9 bits (171), Expect = 1e-13
 Identities = 26/181 (14%), Positives = 42/181 (23%), Gaps = 57/181 (31%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           +L C A G P     W +               +       L    V  +DAGF+VC   
Sbjct: 37  KLCCRATGHPFVQYQWFKMN-----------KEIPNGNTSELIFNAVHVKDAGFYVCRVN 85

Query: 319 SVAGS-TTVRAFLQVRE------------------FCVLPK-------GTFTL------- 345
           +      +  + L V +                   CV P         T  L       
Sbjct: 86  NNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGS 145

Query: 346 ----------GQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGE-TSWSASLSVEPR 394
                       P           +   +     G Y C   ++     S    + ++  
Sbjct: 146 PIPHYQWFKNELPLTHETKKLYM-VP-YVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL 203

Query: 395 P 395
            
Sbjct: 204 N 204

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 22/156 (14%), Positives = 37/156 (23%), Gaps = 30/156 (19%)

Query: 346 GQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGE-TSWSASLSVEPRPGPHAVHRMP 404
            +  +  GN+        +   D+G Y C  ++      S  + L V   P         
Sbjct: 56  NKE-IPNGNTSELIFN-AVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDG 113

Query: 405 DSGLFPGPPAAPVILNTTRG-SVTLG---WGEPEPRGGGVAPVIGYTVEYFSSDLQTGWV 460
            S         P       G ++ L     G P P          Y            W 
Sbjct: 114 VSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPH---------YQ-----------WF 153

Query: 461 VAAHRITSTS---ITVSDLKPDTSYMFIVRAENSHG 493
                +T  +     V  +  +    +     N   
Sbjct: 154 KNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRD 189

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  123 bits (311), Expect = 1e-32
 Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 7/136 (5%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK-MPTGRAKILDD---RSLQIENV 130
             E  D T   G   +  C++ G PLP I W R   + + + + K+  D    +L +   
Sbjct: 11  RKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTE 70

Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRA--EPKDTRVASGETALLECGPPKG 188
             +DEG+Y C   N VG +   + L +             +    A G T  L      G
Sbjct: 71  EQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHV-MYIG 129

Query: 189 QPEPTLHWKKNGQFID 204
           +P P + W    + + 
Sbjct: 130 RPVPAMTWFHGQKLLQ 145

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 80.9 bits (200), Expect = 1e-17
 Identities = 38/200 (19%), Positives = 69/200 (34%), Gaps = 42/200 (21%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRR-TLGWLR 222
            R E KD     GE A L C    G+P P + W + G+  +L  S+   +S       L 
Sbjct: 10  IRKEMKDVTTKLGEAAQLSC-QIVGRPLPDIKWYRFGK--ELIQSRKYKMSSDGRTHTLT 66

Query: 223 VRPL-------YWNVARPRANLNPRYIGRKMASLLIWNHPRVN----------------- 258
           V          Y  +A      N        + LL+   P+ +                 
Sbjct: 67  VMTEEQEDEGVYTCIAT-----NEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTL 121

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKE-DAGFFV 314
           RL     G P+P++ W      +         ++ +        L ++ VQ++  AG + 
Sbjct: 122 RLHVMYIGRPVPAMTWFHGQKLL-----QNSENITIENTEHYTHLVMKNVQRKTHAGKYK 176

Query: 315 CSALSVAGSTTVRAFLQVRE 334
               +V G+      +++++
Sbjct: 177 VQLSNVFGTVDAILDVEIQD 196

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 79.7 bits (197), Expect = 2e-17
 Identities = 30/174 (17%), Positives = 55/174 (31%), Gaps = 40/174 (22%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           +LSC   G PLP + W + G ++       Y      +  TL +   ++ED G + C A 
Sbjct: 26  QLSCQIVGRPLPDIKWYRFGKEL--IQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIAT 83

Query: 319 SVAGSTTVRAFLQVRE-------------FCVLPKGTFTL-----GQPN----------- 349
           +  G     + L ++              +      T  L     G+P            
Sbjct: 84  NEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKL 143

Query: 350 ---------LATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPR 394
                      T +     +    R+T +G Y    S+  G       + ++ +
Sbjct: 144 LQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 77.4 bits (191), Expect = 1e-16
 Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 7/100 (7%)

Query: 64  IAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDD 122
            A       +P+          GS +       G P+P + W      +  +    I + 
Sbjct: 98  QATPQFHPGYPL--KEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENT 155

Query: 123 ---RSLQIENVGPQ-DEGLYICDVENLVGSISLRASLTVH 158
                L ++NV  +   G Y   + N+ G++     + + 
Sbjct: 156 EHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDS 406
              + D G+YTC A++E GE   S+ L ++  P  H  + + + 
Sbjct: 69  TEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEK 112

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  126 bits (318), Expect = 1e-32
 Identities = 53/308 (17%), Positives = 88/308 (28%), Gaps = 59/308 (19%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPT-----ILWRRDDGKMPT--------------G 115
           +  P+      G  V   C +    +       + W R                      
Sbjct: 4   VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESK 63

Query: 116 RAKILDDR--------SLQIENVGPQDEGLYICDVENLV-GSISLRASLTVHLLRDDFRA 166
           R + +  R        SL++  +  +DEG Y C       GS S+   L V L +    A
Sbjct: 64  RLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV-LAKPQNTA 122

Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRR--TLGWLRVR 224
           E +  ++      +  C    G+P   + W  +   +   S     LS          + 
Sbjct: 123 EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILV 182

Query: 225 PLYW-----------NVARPR-----ANLNPRYIGRKMASLLIWNHPRVN---RLSCFAE 265
           P              + +  +      NL   Y      S    N         L+C A 
Sbjct: 183 PSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDAR 242

Query: 266 GSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 324
            +P P    W+     +  F         V Q   L I+ V K      +C+  +  G+ 
Sbjct: 243 SNPEPTGYNWSTTMGPLPPF--------AVAQGAQLLIRPVDKPINTTLICNVTNALGAR 294

Query: 325 TVRAFLQV 332
                +QV
Sbjct: 295 QAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 80.1 bits (197), Expect = 1e-16
 Identities = 31/144 (21%), Positives = 42/144 (29%), Gaps = 12/144 (8%)

Query: 69  LIKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDDR---- 123
           L KP   +E     +    V    C   GG P   I W  D G MP              
Sbjct: 115 LAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVT 174

Query: 124 ---SLQIENVGPQDEGLYICDVEN--LVGSISLRASLTVHLLRDDFRAEPKDTRVASGET 178
                 +      D     C VE+        L  +LTV+   +   +   +        
Sbjct: 175 VTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNE 234

Query: 179 ALLECGPPKGQPEPT-LHWKKNGQ 201
           A L C   +  PEPT  +W     
Sbjct: 235 ATLTC-DARSNPEPTGYNWSTTMG 257

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 78.6 bits (193), Expect = 4e-16
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 3/88 (3%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPT-ILWRRDDGKMPTGRAKILDDRSLQIEN 129
               IS   +   L  +     C    +P PT   W    G +P     +     L I  
Sbjct: 217 PEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLP--PFAVAQGAQLLIRP 274

Query: 130 VGPQDEGLYICDVENLVGSISLRASLTV 157
           V        IC+V N +G+     ++ V
Sbjct: 275 VDKPINTTLICNVTNALGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 60.9 bits (147), Expect = 3e-10
 Identities = 32/298 (10%), Positives = 63/298 (21%), Gaps = 74/298 (24%)

Query: 167 EPKDTRVASGETALLEC----GPPKGQPEPTLHWKKNGQFIDLE---SSKSLDLSRRTLG 219
            P       G++  L C       +      L W ++G+   +     ++    S     
Sbjct: 6   APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRL 65

Query: 220 WLRVRPLY----------WNVARP-------RANLNPRYIGRKMASLLIWNHPRVN---- 258
                 L           + +               P+        L +   P+      
Sbjct: 66  EFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQ 125

Query: 259 ----------RLSCFAE-GSPLPSVFWTQEGSQVLMFPGNAYGHLH--VTQEGTLRIQGV 305
                        C +  G P   + W  +    +       G L   VT      +   
Sbjct: 126 KVQLTGEPVPMARCVSTGGRPPAQITWHSDL-GGMPNTSQVPGFLSGTVTVTSLWILVPS 184

Query: 306 QKEDAGFFVCSALSVAGSTTVRAFLQV------REFCVLPKGTFTLGQPNL-----ATGN 354
            + D     C     +        + +                + LGQ        A  N
Sbjct: 185 SQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSN 244

Query: 355 ------------SDLRRIAC---------DLRETDSGLYTCTASSESGETSWSASLSV 391
                         L   A           + +  +    C  ++  G      ++ V
Sbjct: 245 PEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 30/220 (13%), Positives = 60/220 (27%), Gaps = 67/220 (30%)

Query: 259 RLSCFAEGSPLP-----SVFWTQEGSQVLMFPGNAYGHLHV----------------TQE 297
            L C+ +   +       + W + G    M   +                        + 
Sbjct: 19  TLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRN 78

Query: 298 GTLRIQGVQKEDAGFFVCSALS-VAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNS- 355
            +LR+ G++ ED G + C  ++   GS +V  +L+V      P+ T  + +  L      
Sbjct: 79  ASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL---AKPQNTAEVQKVQLTGEPVP 135

Query: 356 -------------------DLRRIAC---------------------DLRETDSGLYTCT 375
                              DL  +                          + D    TC 
Sbjct: 136 MARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCK 195

Query: 376 ASSESGETSWSASLSVE-PRPGPHAVHRMPDSGLFPGPPA 414
              ES E     ++++    P   ++    ++       A
Sbjct: 196 VEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEA 235

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  123 bits (310), Expect = 2e-32
 Identities = 27/163 (16%), Positives = 48/163 (29%), Gaps = 13/163 (7%)

Query: 68  ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAK--------- 118
           A+      S   +  +   + V+  C   G   P + W+ D G                 
Sbjct: 1   AMGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYE 60

Query: 119 ---ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH-LLRDDFRAEPKDTRVA 174
                    +  ++V  +D G Y C V    G+      + +  L+          +   
Sbjct: 61  DRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSAT 120

Query: 175 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRT 217
            G  A+L C    G P     W K+G  +      +   S  +
Sbjct: 121 IGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSS 163

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 83.1 bits (205), Expect = 2e-18
 Identities = 31/215 (14%), Positives = 59/215 (27%), Gaps = 45/215 (20%)

Query: 152 RASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSL 211
             S+TVH       +   + R+       L C    G   P + WK +          + 
Sbjct: 2   MGSVTVH-------SSEPEVRIPENNPVKLSC-AYSGFSSPRVEWKFDQGDTTRLVCYNN 53

Query: 212 DLSRRTLGWLRVRP--------------LYWNVARPRANLNPRYIGRKMASLLIWNHPRV 257
            ++      +   P               Y  +            G     L++   P  
Sbjct: 54  KITASYEDRVTFLPTGITFKSVTREDTGTYTCMVS---EEGGNSYGEVKVKLIVLVPPSK 110

Query: 258 N--------------RLSCFA-EGSPLPSVFWTQEGSQVLMFP-----GNAYGHLHVTQE 297
                           L+C   +GSP     W ++G  +   P      +   ++     
Sbjct: 111 PTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTT 170

Query: 298 GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332
           G L    +   D G + C A +  G+      +++
Sbjct: 171 GELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 79.6 bits (196), Expect = 3e-17
 Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 12/104 (11%)

Query: 67  EALIKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTG---------- 115
             L+ P   +    ++   G+     C    G P     W +D   MPT           
Sbjct: 103 IVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNS 162

Query: 116 -RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
                     L  + +   D G Y C+  N  G+     ++ + 
Sbjct: 163 SYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 206

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 71.5 bits (175), Expect = 2e-14
 Identities = 28/186 (15%), Positives = 49/186 (26%), Gaps = 54/186 (29%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGN------AYGHLHVTQEGTLRIQGVQKEDAGF 312
           +LSC   G   P V W  +                +Y          +  + V +ED G 
Sbjct: 23  KLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGT 82

Query: 313 FVCSALSVAGSTTVRAFLQVREF-----------------------CVLPKG-------- 341
           + C      G++     +++                          C    G        
Sbjct: 83  YTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTW 142

Query: 342 ---------------TFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWS 386
                           F+     L     +L      L  +D+G Y+C A +  G    S
Sbjct: 143 FKDGIVMPTNPKSTRAFSNSSYVLNPTTGEL-VFD-PLSASDTGEYSCEARNGYGTPMTS 200

Query: 387 ASLSVE 392
            ++ +E
Sbjct: 201 NAVRME 206

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  122 bits (307), Expect = 4e-32
 Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 9/137 (6%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD-----GKMPTGRAKILDDR-SLQIE 128
                   VL GS   F   + G P+P + W RD        +P  +    D R  L I 
Sbjct: 9   TQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIP 68

Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVHLLRD--DFRAEPKDTRVASGETALLECGPP 186
            V   + G Y     N  G  +  A L V       +F    +   V  G    L+    
Sbjct: 69  AVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVR-V 127

Query: 187 KGQPEPTLHWKKNGQFI 203
            G P P + + ++G  I
Sbjct: 128 TGIPTPVVKFYRDGAEI 144

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 95.2 bits (237), Expect = 9e-23
 Identities = 45/194 (23%), Positives = 73/194 (37%), Gaps = 31/194 (15%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLS----RRTLG 219
           F    +   V  G TA  E     G P P + W ++GQ I   +   + +S    R  L 
Sbjct: 8   FTQPLQSVVVLEGSTATFEA-HISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLT 66

Query: 220 WLRVRP----LYWNVAR-------PRANLN------PRYIGRKMASLLIWNHPRVNRLSC 262
              V       Y   A          A L       P    +++ S+ +    +V RL  
Sbjct: 67  IPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQV-RLQV 125

Query: 263 FAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSALS 319
              G P P V + ++G+++      +     ++QEG   +L I     ED+G +  +A +
Sbjct: 126 RVTGIPTPVVKFYRDGAEI-----QSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATN 180

Query: 320 VAGSTTVRAFLQVR 333
             G  T  A L V+
Sbjct: 181 SVGRATSTAELLVQ 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 94.0 bits (234), Expect = 2e-22
 Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 4/101 (3%)

Query: 62  KLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKIL 120
           +L+ K     P  +      TV  GS V    RV G P P + + RD  ++  +   +I 
Sbjct: 94  ELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQIS 153

Query: 121 DD---RSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
            +    SL I    P+D G Y  +  N VG  +  A L V 
Sbjct: 154 QEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 90.6 bits (225), Expect = 4e-21
 Identities = 33/172 (19%), Positives = 51/172 (29%), Gaps = 39/172 (22%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
                  G P+P V W ++G  +                  L I  V K ++G +   A 
Sbjct: 24  TFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKAT 83

Query: 319 SVAGSTTVRAFLQVREFCVLPK-------------GTFTL-----GQPN----------- 349
           + +G  T  A L V+     P                  L     G P            
Sbjct: 84  NGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAE 143

Query: 350 ---------LATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVE 392
                       G+     IA +    DSG Y+  A++  G  + +A L V+
Sbjct: 144 IQSSLDFQISQEGDLYSLLIA-EAYPEDSGTYSVNATNSVGRATSTAELLVQ 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGP 397
            + + +SG Y+  A++ SG+ + +A L V+    P
Sbjct: 69  AVTKANSGRYSLKATNGSGQATSTAELLVKAETAP 103

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  121 bits (306), Expect = 4e-32
 Identities = 39/153 (25%), Positives = 58/153 (37%), Gaps = 7/153 (4%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT---GRAKILDDRSLQIE 128
                  S      G   E VCRV   P P + W   + ++ T    R  +L + +LQI 
Sbjct: 3   LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQIL 62

Query: 129 NVGPQDEGLYICDVENLV-GSISLRASLTVHLLRDDFRA--EPKDTRVASGETALLECGP 185
           N+   DEG+Y C+      G I  R  + +  +        +  +     GE     C  
Sbjct: 63  NINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSC-R 121

Query: 186 PKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
             G PEP + W +NG+ I+      L  S   L
Sbjct: 122 ASGSPEPAISWFRNGKLIEENEKYILKGSNTEL 154

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 95.6 bits (238), Expect = 7e-23
 Identities = 40/190 (21%), Positives = 67/190 (35%), Gaps = 29/190 (15%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS-KSLDLSRRTLGWLR 222
           FR          GE A + C      P P + W  + + +   S  +   L+   L  L 
Sbjct: 5   FREVVSPQEFKQGEDAEVVC-RVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN 63

Query: 223 VRP----LYWNVARPRANLNPRYIGRKMASLLIWNHPRVN----------------RLSC 262
           +      +Y    R         I  +   +++   P ++                  SC
Sbjct: 64  INKSDEGIYRCEGR---VEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSC 120

Query: 263 FAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 322
            A GSP P++ W + G  +     N   ++       L ++ +   D G +VC A + AG
Sbjct: 121 RASGSPEPAISWFRNGKLI---EENEK-YILKGSNTELTVRNIINSDGGPYVCRATNKAG 176

Query: 323 STTVRAFLQV 332
               +AFLQV
Sbjct: 177 EDEKQAFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 91.4 bits (227), Expect = 2e-21
 Identities = 30/111 (27%), Positives = 43/111 (38%), Gaps = 7/111 (6%)

Query: 52  ARGALSDDQWKLIAKEALIKPFPIS--EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD 109
           ARG +      +I     + P      +  +AT   G  + F CR  G P P I W R+ 
Sbjct: 80  ARGEIDFRDIIVIV---NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNG 136

Query: 110 GKMPTGRAKIL--DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
             +      IL   +  L + N+   D G Y+C   N  G    +A L V 
Sbjct: 137 KLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 87.5 bits (217), Expect = 4e-20
 Identities = 33/171 (19%), Positives = 52/171 (30%), Gaps = 43/171 (25%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            + C    SP P+V W     +V     N      +     L+I  + K D G + C   
Sbjct: 21  EVVCRVSSSPAPAVSWLYHNEEVTTISDN---RFAMLANNNLQILNINKSDEGIYRCEGR 77

Query: 319 SVAGSTTVRAFLQVR-----EFCVLPK---------GTFTL-----GQP----------- 348
             A        + V         +  K            T      G P           
Sbjct: 78  VEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGK 137

Query: 349 --------NLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSV 391
                    L   N++L  +  ++  +D G Y C A++++GE    A L V
Sbjct: 138 LIEENEKYILKGSNTEL-TVR-NIINSDGGPYVCRATNKAGEDEKQAFLQV 186

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score =  129 bits (326), Expect = 1e-31
 Identities = 55/397 (13%), Positives = 102/397 (25%), Gaps = 81/397 (20%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQV-LMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 317
            +       PL +  W   G                      +  + +     G+     
Sbjct: 95  NVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDE 154

Query: 318 LSVA-------------GSTTVRAFLQVREFCV-----LPKGTFTLGQPNLATGNSDLRR 359
           + V               +  V A       C      +      L   ++        +
Sbjct: 155 VKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIK 214

Query: 360 IAC-----------DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGL 408
           +             +  + D+G Y C   +E G    + +  V   P             
Sbjct: 215 VTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEP------------- 261

Query: 409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
            P P A P + +     + +        G G  P++   VEY ++     W      + S
Sbjct: 262 -PVPIAPPQLASVGATYLWIQLNANSINGDG--PIVAREVEYCTAS--GSWN-DRQPVDS 315

Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGI--PSPVSPITRTLGLNSLVPQHLLDEARARLG 526
           TS  +  L PDT Y   V        G   P P              P+ L         
Sbjct: 316 TSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKL--------- 366

Query: 527 TKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRI 586
                  E++   S  + I WE        + +    +     V    ++         +
Sbjct: 367 -------EVVEVKSRQITIRWE-----PFGYNVTRCHS-YNLTVHYCYQVGGQEQVREEV 413

Query: 587 TWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPF 623
           +W+           +   +T+T+L  +T     L+  
Sbjct: 414 SWDT--------ENSHPQHTITNLSPYTNVSVKLILM 442

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 91.8 bits (227), Expect = 2e-19
 Identities = 63/485 (12%), Positives = 105/485 (21%), Gaps = 93/485 (19%)

Query: 185 PPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVR----------PLYWNVARPR 234
                P     W  +G      +   L +S     + +V            L  +  +  
Sbjct: 99  KVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVL 158

Query: 235 ANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHL-H 293
            +   R         +  N  +     C A G  +       +G  V   P         
Sbjct: 159 GHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSS 218

Query: 294 VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLG------- 346
                +  +    K DAG + C   +  G         V +   +P     L        
Sbjct: 219 RRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYL 278

Query: 347 ----QPNLATGNSDL----------------RRIACDLRETDSGL-----YTC----TAS 377
                 N   G+  +                R+           L     Y      T  
Sbjct: 279 WIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRP 338

Query: 378 SESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRG 437
            E G  S   +L    +         P        P    ++      +T+ W EP    
Sbjct: 339 GEGGTGSPGPALRTRTKCAD------P-----MRGPRKLEVVEVKSRQITIRW-EPFGYN 386

Query: 438 GGVAPVIGYTVEYFSSDLQTGW----VVAAHRITSTSITVSDLKPDTSYMFIVRAENSHG 493
                    TV Y             V      +    T+++L P T+    +   N  G
Sbjct: 387 VTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEG 446

Query: 494 LGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGS 553
                 +   T        +P              V        T    + + W      
Sbjct: 447 RKESQELIVQTD-----EDLPG------------AVPTESIQGSTFEEKIFLQWR-EPTQ 488

Query: 554 VPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF 613
               +          ++         +S    I         V      T +    L   
Sbjct: 489 TYGVI-------TLYEI----TYKAVSSFDPEIDLSN-QSGRVSKLGNETHFLFFGLYPG 536

Query: 614 TKYEF 618
           T Y F
Sbjct: 537 TTYSF 541

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 71.3 bits (174), Expect = 4e-13
 Identities = 41/253 (16%), Positives = 70/253 (27%), Gaps = 48/253 (18%)

Query: 410 PGPPAAPVILNTTRG-SVTLGWGEPEPRGGGVAPVIGYTVEY-------FSSDLQTGWVV 461
           PG      I  +T    + L W EP    G    +  Y + Y          DL      
Sbjct: 462 PGAVPTESIQGSTFEEKIFLQWREPTQTYG---VITLYEITYKAVSSFDPEIDLSNQSGR 518

Query: 462 AAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEA 521
            +     T      L P T+Y F +RA  + G G P+     T+        P       
Sbjct: 519 VSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQFTTKI-----SAP------- 566

Query: 522 RARLGTKVVNLRELIPTASTAVRITWEV---SWGSVPQHLL-----DEARARLGTKVVNL 573
                     L   +      V +  +        V  + +        R +  T+++  
Sbjct: 567 ----SMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKC 622

Query: 574 RELIPTASTAVRITWEKYNMA-------------TVMNAATTTSYTVTHLRKFTKYEFFL 620
             +      A  +  + Y  A             T+ +  T   Y  T L  +  Y  + 
Sbjct: 623 YPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYF 682

Query: 621 VPFFKTVEGARLD 633
               +     ++D
Sbjct: 683 QAASRANGETKID 695

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 52.5 bits (125), Expect = 3e-07
 Identities = 21/139 (15%), Positives = 37/139 (26%), Gaps = 11/139 (7%)

Query: 93  CRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLR 152
            +V   PL   +W        T          L I    P    +    + +        
Sbjct: 98  VKVNNGPLGNPIWNISGDPTRTWN-----RAELAISTFWPNFYQVIFEVITSGHQGYLAI 152

Query: 153 ASLTVHLL---RDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 209
             + V      R       ++  V +G+ A  +C    G+          G  +     K
Sbjct: 153 DEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQC-SAIGRTVAGDRLWLQGIDVRDAPLK 211

Query: 210 SLDL--SRRTLGWLRVRPL 226
            + +  SRR +    V   
Sbjct: 212 EIKVTSSRRFIASFNVVNT 230

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 49.8 bits (118), Expect = 2e-06
 Identities = 21/128 (16%), Positives = 32/128 (25%), Gaps = 8/128 (6%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILW---RRDDGKMPTGRAKILDDRS---- 124
                   +  V +G    F C   G  +          D    P    K+   R     
Sbjct: 165 TPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIAS 224

Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETAL-LEC 183
             + N   +D G Y C +    G      +  V        A P+   V +    + L  
Sbjct: 225 FNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNA 284

Query: 184 GPPKGQPE 191
               G   
Sbjct: 285 NSINGDGP 292

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 44.4 bits (104), Expect = 9e-05
 Identities = 21/140 (15%), Positives = 31/140 (22%), Gaps = 46/140 (32%)

Query: 410 PGPPAAPV--ILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQ----------- 456
           P  PA  +   LN T  +VT+       RG    PV  Y +       +           
Sbjct: 566 PSMPAYELETPLNQTDNTVTVMLKPAHSRGA---PVSVYQIVVEEERPRRTKKTTEILKC 622

Query: 457 -------------------TGWVVAAHRITSTSITVSD-----------LKPDTSYMFIV 486
                                   A     +   T+ D           L P  SY    
Sbjct: 623 YPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYF 682

Query: 487 RAENSHGLGIPSPVSPITRT 506
           +A +            +   
Sbjct: 683 QAASRANGETKIDCVQVATK 702

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  124 bits (312), Expect = 1e-31
 Identities = 43/307 (14%), Positives = 77/307 (25%), Gaps = 42/307 (13%)

Query: 66  KEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPL---------PTILWRRDDGKMPTGR 116
            + L          +     G      C    D L           + W +         
Sbjct: 24  SKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLN 83

Query: 117 AKILDDRSLQIENVGPQDEG-LYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVAS 175
            ++  +  L I N    D    Y+C V    G        +          E  +     
Sbjct: 84  RRV-KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHD 142

Query: 176 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP----LY---- 227
                L CG    +    + W KN Q + ++ +K      + L            Y    
Sbjct: 143 KYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSG-QNLIIHNPELEDSGRYDCYV 201

Query: 228 -------WNVARPRANLNPRYIGRKMASLLIWNHPRVN-------RLSCFAEGSPLP--- 270
                   N            I  +     +   P++N        ++C A  + L    
Sbjct: 202 HYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDD 261

Query: 271 -SVFWTQEGSQVLMFPGNAYGHL---HVTQEGTLRIQGVQKEDAGF-FVCSALSVAGSTT 325
             + W      ++      Y  L       E TL  + V +E  G  + C   +     T
Sbjct: 262 VLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKT 321

Query: 326 VRAFLQV 332
           +   + +
Sbjct: 322 LTTTVVL 328

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 69.5 bits (169), Expect = 6e-13
 Identities = 18/110 (16%), Positives = 30/110 (27%), Gaps = 14/110 (12%)

Query: 62  KLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLP----TILWRRDDGKMPTGRA 117
            L    +    F +       V  G      C      L      I W    G +     
Sbjct: 219 ILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDF 278

Query: 118 KI---------LDDRSLQIENVGPQDEG-LYICDVENLVGSISLRASLTV 157
            +         + + +L  ENV  +  G  Y C   N     +L  ++ +
Sbjct: 279 GVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 62.9 bits (152), Expect = 8e-11
 Identities = 38/305 (12%), Positives = 73/305 (23%), Gaps = 89/305 (29%)

Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL--GWLRVR 224
              +   A GE    +C P +       +  K+      +  K+     R +  G L + 
Sbjct: 35  GTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIA 94

Query: 225 PL--------YWNVARPRANLNPRYIGRKMASLL------IWNHPRVN---------RLS 261
                     Y                 +                             L 
Sbjct: 95  NYTSNDSHRRYLCTVT-----TKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLY 149

Query: 262 C-FAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 320
           C         ++ W +   ++++      G  +      L I   + ED+G + C     
Sbjct: 150 CGILYAKHYNNITWYKNNQELII-----DGTKYSQSGQNLIIHNPELEDSGRYDCYVHYD 204

Query: 321 AGST------TVRAFLQVRE-------FCVLPKGTFTLGQP-NL---ATGNSDLRRIAC- 362
                     +    L V           + PK   T+G+P N+   A   S L      
Sbjct: 205 DVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLI 264

Query: 363 ----------------------------------DLRETDSG-LYTCTASSESGETSWSA 387
                                             ++ E   G  YTC   +   + + + 
Sbjct: 265 DWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTT 324

Query: 388 SLSVE 392
           ++ +E
Sbjct: 325 TVVLE 329

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 50.6 bits (120), Expect = 7e-07
 Identities = 32/287 (11%), Positives = 62/287 (21%), Gaps = 75/287 (26%)

Query: 258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAG-FFVCS 316
           + L           V W + G      P N        + G L I      D+   ++C+
Sbjct: 56  DSLLSHRYNDKDNVVNWEKIGKTRR--PLN-----RRVKNGDLWIANYTSNDSHRRYLCT 108

Query: 317 ALSVAGSTTVRAF-LQVRE---------------------FCVLPKG------------- 341
             +  G          +R+                     +C +                
Sbjct: 109 VTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQ 168

Query: 342 TFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVH 401
              +     +    +L  I  +    DSG Y C    +         +S           
Sbjct: 169 ELIIDGTKYSQSGQNLI-IH-NPELEDSGRYDCYVHYDDVRIKNDIVVSRCKIL------ 220

Query: 402 RMPDSGLFPGPPAAPVILNTTRGS-VTL---GWGEPEPR----------GGGVAPVIGYT 447
            +  S            +N T G    +                      G +  +    
Sbjct: 221 TVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGV 280

Query: 448 VEYFSSDLQTGWVVAAHRITSTSITVSDLKP-DTSYMFIVRAENSHG 493
               +S            IT  ++   ++        +  R  N + 
Sbjct: 281 YSILTSS---------GGITEATLYFENVTEEYIGNTYTCRGHNYYF 318

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  119 bits (301), Expect = 1e-31
 Identities = 41/155 (26%), Positives = 57/155 (36%), Gaps = 10/155 (6%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR------SL 125
              +  P   TV  G  V+  C V G   P I W +D   +       +          L
Sbjct: 3   LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFL 62

Query: 126 QIENVGPQDEGLYICDVENLVGS-ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECG 184
            +++V   D G Y C VE+   + IS    LTV  +   F  EPKD  V       L C 
Sbjct: 63  SLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGV-PFFTVEPKDLAVPPNAPFQLSC- 120

Query: 185 PPKGQPEP-TLHWKKNGQFIDLESSKSLDLSRRTL 218
              G PEP T+ W +    I   +     L+   +
Sbjct: 121 EAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGV 155

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 78.3 bits (193), Expect = 6e-17
 Identities = 32/191 (16%), Positives = 65/191 (34%), Gaps = 34/191 (17%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRT-LGWLR 222
               P    V+ G+   L C   +G  EP + W K+G  +       + +S +  +G+L 
Sbjct: 5   LMGAPVKLTVSQGQPVKLNCSV-EGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLS 63

Query: 223 VRPL-------YWNVAR--------PRANLN---PRYIGRKMASLLIWNHPRVNRLSCFA 264
           ++ +       YW                L      +   +   L +  +    +LSC A
Sbjct: 64  LKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPF-QLSCEA 122

Query: 265 EGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 323
            G P P ++ W +  ++           +         +       +  F C A ++ G 
Sbjct: 123 VGPPEPVTIVWWRGTTK-----------IGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGL 171

Query: 324 TTVR-AFLQVR 333
            + R A + ++
Sbjct: 172 ASSRTATVHLQ 182

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 76.4 bits (188), Expect = 2e-16
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 28/162 (17%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           +L+C  EG   P + W ++G+ V                G L ++ V++ DAG + C   
Sbjct: 21  KLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVE 80

Query: 319 SVAGS-TTVRAFLQVRE---FCVLPK-------GTFTL-----GQPNLAT---------- 352
               +  +   +L V     F V PK         F L     G P   T          
Sbjct: 81  DGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKI 140

Query: 353 -GNSDLRRIACDLRETDSGLYTCTASSESGE-TSWSASLSVE 392
            G +    +      T S +++C A +  G  +S +A++ ++
Sbjct: 141 GGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 182

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 74.8 bits (184), Expect = 9e-16
 Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 7/89 (7%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPTGRAKILDDRSLQIENV 130
           PF   EP D  V   +  +  C   G P P TI+W R   K+              +   
Sbjct: 99  PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP-----APSPSVLNVT 153

Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHL 159
           G     ++ C+  NL G  S   + TVHL
Sbjct: 154 GVTQSTMFSCEAHNLKGLAS-SRTATVHL 181

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  119 bits (300), Expect = 7e-31
 Identities = 36/159 (22%), Positives = 57/159 (35%), Gaps = 10/159 (6%)

Query: 74  PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT-----GRAKILDDRSLQIE 128
              E     V + + V+F C  GG+P+PT+ W ++  +        G        SL +E
Sbjct: 22  EKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME 81

Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTV----HLLRDDFRAEPKDTRVASGETALLECG 184
           +V P D+G Y C VEN  GSI+    L V              P +     G      C 
Sbjct: 82  SVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVC- 140

Query: 185 PPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
                 +P + W K+ +    +         + L    +
Sbjct: 141 KVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGI 179

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  101 bits (253), Expect = 2e-24
 Identities = 38/223 (17%), Positives = 63/223 (28%), Gaps = 35/223 (15%)

Query: 143 ENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQF 202
           E+ V   S           +  + E +   V +  T    C P  G P PT+ W KNG+ 
Sbjct: 3   EDFVSENSNNKRAPYWT--NTEKMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGKE 59

Query: 203 IDLESSKSLDLSRRTLGWLRVRPL-------Y----WNVA-----------RPRANLNPR 240
              E        R     L +  +       Y     N               R+   P 
Sbjct: 60  FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPI 119

Query: 241 YIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQ---------VLMFPGNAYGH 291
                 A+        V    C       P + W +   +         +       +  
Sbjct: 120 LQAGLPANASTVVGGDV-EFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSG 178

Query: 292 LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
           ++ +    L +  V + DAG ++C   +  G     A+L V  
Sbjct: 179 INSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLP 221

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 90.7 bits (225), Expect = 7e-21
 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 15/112 (13%)

Query: 62  KLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK---------- 111
            ++ +           P++A+ + G  VEFVC+V  D  P I W +   K          
Sbjct: 109 DVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGL 168

Query: 112 -----MPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
                +        +   L + NV   D G YIC V N +G  +  A LTV 
Sbjct: 169 PYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVL 220

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 82.3 bits (203), Expect = 7e-18
 Identities = 36/190 (18%), Positives = 60/190 (31%), Gaps = 53/190 (27%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSA 317
           +  C A G+P+P++ W + G +      +  G   V  +  +L ++ V   D G + C  
Sbjct: 38  KFRCPAGGNPMPTMRWLKNGKEF--KQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 95

Query: 318 LSVAGSTTVRAFLQVRE--------FCVLPK-------GTFTL----------------- 345
            +  GS      L V E           LP        G                     
Sbjct: 96  ENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKH 155

Query: 346 GQPNLATGNSDLRRIAC------------------DLRETDSGLYTCTASSESGETSWSA 387
            + N +    D                        ++ E D+G Y C  S+  G+ + SA
Sbjct: 156 VEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSA 215

Query: 388 SLSVEPRPGP 397
            L+V P+   
Sbjct: 216 WLTVLPKQQA 225

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 18/80 (22%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTT 422
            +  +D G YTC   +E G  + +  L V  R     +       L  G PA     N +
Sbjct: 82  SVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPI-------LQAGLPA-----NAS 129

Query: 423 R---GSVTLG---WGEPEPR 436
               G V      + + +P 
Sbjct: 130 TVVGGDVEFVCKVYSDAQPH 149

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  116 bits (293), Expect = 2e-30
 Identities = 28/142 (19%), Positives = 49/142 (34%), Gaps = 6/142 (4%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRDDGKMPTGRAKILDDRSLQIE 128
           +P  ++        S   V   C +           W ++  ++   R K   +   +I 
Sbjct: 3   EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR-KNASNMEYRIN 61

Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKG 188
               +D G Y C V + V +    A++ V     D     +      G+ A++ C    G
Sbjct: 62  KPRAEDSGEYHC-VYHFVSAPKANATIEVK-AAPDITGHKRSENKNEGQDAMMYCK-SVG 118

Query: 189 QPEPTLHWKKNGQFIDLESSKS 210
            P P   W+K    +  E S S
Sbjct: 119 YPHPEWMWRKKENGVFEEISNS 140

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 97.6 bits (243), Expect = 1e-23
 Identities = 39/191 (20%), Positives = 63/191 (32%), Gaps = 28/191 (14%)

Query: 164 FRAEPKDTRVASGETALLEC---GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGW 220
                +     S     L+C              +W KNG  +        + S      
Sbjct: 6   IVTSEEVIIRDSLLPVTLQCNLTSSSH--TLMYSYWTKNGVELTATRK---NASNMEYRI 60

Query: 221 LRVRP----LYW----NVARPRANLN------PRYIGRKMASLLIWNHPRVNRLSCFAEG 266
            + R      Y      V+ P+AN        P   G K +         +  + C + G
Sbjct: 61  NKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAM--MYCKSVG 118

Query: 267 SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT---LRIQGVQ-KEDAGFFVCSALSVAG 322
            P P   W ++ + V     N+ G   +  +     L I  +Q  ED G + C+A +  G
Sbjct: 119 YPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIG 178

Query: 323 STTVRAFLQVR 333
           S +V   L+VR
Sbjct: 179 SASVSTVLRVR 189

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 86.1 bits (213), Expect = 1e-19
 Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 10/100 (10%)

Query: 69  LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP------TGRAKILDD 122
              P             G      C+  G P P  +WR+ +  +       +GR  I++ 
Sbjct: 90  KAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINK 149

Query: 123 ---RSLQIENV-GPQDEGLYICDVENLVGSISLRASLTVH 158
                L I N+   +D G Y C+  N +GS S+   L V 
Sbjct: 150 ENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 68.3 bits (167), Expect = 2e-13
 Identities = 28/175 (16%), Positives = 45/175 (25%), Gaps = 50/175 (28%)

Query: 259 RLSCFAEGSPLP--SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 316
            L C    S       +WT+ G ++                   RI   + ED+G + C 
Sbjct: 22  TLQCNLTSSSHTLMYSYWTKNGVEL---TATR----KNASNMEYRINKPRAEDSGEYHCV 74

Query: 317 ALSVAGSTTVRAFLQVRE---FCVLPK-------GTFTL-----GQPN------------ 349
                 +    A ++V+         +           +     G P+            
Sbjct: 75  Y-HFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGV 133

Query: 350 -------------LATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSV 391
                        +   N     I       D G Y C A++  G  S S  L V
Sbjct: 134 FEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  116 bits (292), Expect = 4e-30
 Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 11/141 (7%)

Query: 77  EPSDATVLSGSVVEFVCRVGGDPL-PTILWRRDDGKM---PTGRAKIL----DDRSLQIE 128
            PS   +  G    F+C+V GD     I W   +G+       R  ++    D  +L I 
Sbjct: 8   VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIY 67

Query: 129 NVGPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPK 187
           N    D G+Y C V    G+      ++ +   +  F+  P       GE A++ C    
Sbjct: 68  NANIDDAGIYKCVVTAEDGTQSEATVNVKIF-QKLMFKNAPTPQEFKEGEDAVIVC-DVV 125

Query: 188 GQPEPTLHWKKNGQFIDLESS 208
               PT+ WK  G+ + L+  
Sbjct: 126 SSLPPTIIWKHKGRDVILKKD 146

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 96.4 bits (240), Expect = 3e-23
 Identities = 29/193 (15%), Positives = 56/193 (29%), Gaps = 32/193 (16%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHW-KKNGQFIDLESSK-SLDLSRRTLGWL 221
               P    ++ GE+    C       +  + W   NG+ +     + S+  +      L
Sbjct: 5   VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTL 64

Query: 222 RVRPL-------YWNVARPRANLNPR-YIGRKMASLLIWNHPRVNR-------------- 259
            +          Y  V                  ++ I+                     
Sbjct: 65  TIYNANIDDAGIYKCVVT-----AEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAV 119

Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319
           + C    S  P++ W  +G  V++          V     L+I+G++K D G + C    
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKD---VRFIVLSNNYLQIRGIKKTDEGTYRCEGRI 176

Query: 320 VAGSTTVRAFLQV 332
           +A        +QV
Sbjct: 177 LARGEINFKDIQV 189

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 96.0 bits (239), Expect = 5e-23
 Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 3/93 (3%)

Query: 69  LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT---GRAKILDDRSL 125
             K    + P+      G     VC V     PTI+W+     +      R  +L +  L
Sbjct: 98  FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL 157

Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
           QI  +   DEG Y C+   L         + V 
Sbjct: 158 QIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 66.8 bits (163), Expect = 7e-13
 Identities = 22/171 (12%), Positives = 45/171 (26%), Gaps = 38/171 (22%)

Query: 259 RLSCFAEGSPL-PSVFWTQEGSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCS 316
              C   G      + W     + L         +    +  TL I     +DAG + C 
Sbjct: 21  FFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV 80

Query: 317 ALSVAGS-TTVRAFLQVRE---FCVLPK-------GTFTL-----------------GQP 348
             +  G+ +     +++ +   F   P            +                 G+ 
Sbjct: 81  VTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRD 140

Query: 349 NLATGNSDLR-------RIACDLRETDSGLYTCTASSESGETSWSASLSVE 392
            +   +           +I   +++TD G Y C     +        + V 
Sbjct: 141 VILKKDVRFIVLSNNYLQIR-GIKKTDEGTYRCEGRILARGEINFKDIQVI 190

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  116 bits (293), Expect = 5e-30
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 15/147 (10%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK--MPTGRAKIL-DDRSLQIENVG 131
           I +P +  V  G V  F C   GDP P+I+WR++  K      R  +L     + I  + 
Sbjct: 10  IRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIE 69

Query: 132 P----QDEGLYICDVENLVG-SISLRASLTVHLLRDD------FRAEPKDTRVASGETAL 180
           P    +D+  Y C  EN VG ++S  A+LT++               P    +  G T L
Sbjct: 70  PVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVL 129

Query: 181 LECGPPKGQPEPTLHWKKNGQFIDLES 207
           + C    G P P ++W KN   +D+ +
Sbjct: 130 MTC-KAIGNPTPNIYWIKNQTKVDMSN 155

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 91.8 bits (228), Expect = 3e-21
 Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 35/199 (17%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDL-ESSKSLDLSRRTLGWLR 222
              +P++  V  G  A   C   +G P P++ W+KNG+ +   +S  ++      +  LR
Sbjct: 9   IIRKPQNQGVRVGGVASFYC-AARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILR 67

Query: 223 VRPL--------YWNVAR------------------PRANLNPRYIGRKMASLLIWNHPR 256
           + P+        Y  VA                    +       I +   + +I     
Sbjct: 68  IEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHT 127

Query: 257 VNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 316
           V  ++C A G+P P+++W +  ++V M         +  ++G L+I+  ++ED G + C 
Sbjct: 128 V-LMTCKAIGNPTPNIYWIKNQTKVDMSNP-----RYSLKDGFLQIENSREEDQGKYECV 181

Query: 317 ALSVAGSTTVRA-FLQVRE 334
           A +  G+   +A  L V+ 
Sbjct: 182 AENSMGTEHSKATNLYVKV 200

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 87.5 bits (217), Expect = 6e-20
 Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 3/108 (2%)

Query: 65  AKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDR 123
            K     P     P    +  G  V   C+  G+P P I W ++  K+  +     L D 
Sbjct: 104 DKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG 163

Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRAS-LTVHLLRDDFRAEPKD 170
            LQIEN   +D+G Y C  EN +G+   +A+ L V  +R         
Sbjct: 164 FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVK-VRRVGTKHHHH 210

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 74.1 bits (182), Expect = 3e-15
 Identities = 40/181 (22%), Positives = 58/181 (32%), Gaps = 47/181 (25%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ----KEDAGFFV 314
              C A G P PS+ W + G +V         +  + Q G + I  ++      D   + 
Sbjct: 25  SFYCAARGDPPPSIVWRKNGKKVSGTQSR---YTVLEQPGGISILRIEPVRAGRDDAPYE 81

Query: 315 CSALSVAGST-TVRAFLQVREFCVLPKG--TFTLGQPNL-------------ATGN---- 354
           C A +  G   +  A L + E    P G    T G                 A GN    
Sbjct: 82  CVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPN 141

Query: 355 ------------SDLRRIA-------CDLRETDSGLYTCTASSESGE-TSWSASLSVEPR 394
                       S+ R           + RE D G Y C A +  G   S + +L V+ R
Sbjct: 142 IYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVR 201

Query: 395 P 395
            
Sbjct: 202 R 202

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  118 bits (297), Expect = 1e-29
 Identities = 41/314 (13%), Positives = 79/314 (25%), Gaps = 56/314 (17%)

Query: 70  IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDD---RSL 125
           I PF      +        + F C     P     W +D      + R ++        +
Sbjct: 2   IDPFTKEVVVNVDDDGVISLNFECDKM-TPKSEFSWSKDYVSTEDSPRLEVESKGNKTKM 60

Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRD-----------DFRAEPKDTRVA 174
             +++G  D G+Y CDV +  G  S        L R                      + 
Sbjct: 61  TFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEIL 120

Query: 175 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRT-LGWLRVRPL------- 226
                       K      +++  N + I       + + R T +  + +  L       
Sbjct: 121 EKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGT 180

Query: 227 ----------------------YWNVARPRANLNPRYIGRKMASLLIWNHPRVN-----R 259
                                 +  + +        +I ++    + +    V       
Sbjct: 181 YTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVL 240

Query: 260 LSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           L C          + W ++  ++       +         TL I    K+DAG +     
Sbjct: 241 LKCKVANIKKETHIVWYKDEREI--SVDEKH--DFKDGICTLLITEFSKKDAGIYEVILK 296

Query: 319 SVAGSTTVRAFLQV 332
              G    R  L  
Sbjct: 297 DDRGKDKSRLKLVD 310

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 92.7 bits (230), Expect = 9e-21
 Identities = 25/179 (13%), Positives = 57/179 (31%), Gaps = 24/179 (13%)

Query: 64  IAKEALIKPFPISEPSDATVL-SGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILD 121
           ++ E      P+       +L  G V  ++          + +  ++ ++    + K+  
Sbjct: 100 LSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHI 159

Query: 122 DR-----SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFR----------- 165
           DR      + +E +  +DEG Y   +++   +      L   + +   +           
Sbjct: 160 DRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIR 219

Query: 166 ------AEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
                  E     V      LL+C     + E  + W K+ + I ++          TL
Sbjct: 220 KQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTL 278

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 88.5 bits (219), Expect = 2e-19
 Identities = 33/309 (10%), Positives = 69/309 (22%), Gaps = 83/309 (26%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK---SLDLSRRTL-- 218
            +    +       +   EC   K  P+    W K+    + +S +       ++  +  
Sbjct: 6   TKEVVVNVDDDGVISLNFEC--DKMTPKSEFSWSKDYVSTE-DSPRLEVESKGNKTKMTF 62

Query: 219 ------------------------GWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNH 254
                                     +    L   +A    +  P    +   ++ I   
Sbjct: 63  KDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEK 122

Query: 255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFV 314
            +V       + S    V +     ++   P         T    + ++ +Q ED G + 
Sbjct: 123 GQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYT 182

Query: 315 CSALSVAGSTTVRAFLQVREF----------------------------CVLPKGTFTL- 345
                   +      L    F                             V  +    L 
Sbjct: 183 FQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLK 242

Query: 346 -----------------GQPNLATGNSDLRRIACDLR-----ETDSGLYTCTASSESGET 383
                             +        D +   C L      + D+G+Y      + G+ 
Sbjct: 243 CKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKD 302

Query: 384 SWSASLSVE 392
                L  E
Sbjct: 303 KSRLKLVDE 311

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 19/220 (8%), Positives = 40/220 (18%), Gaps = 54/220 (24%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
              C  + +P     W+++                   +  +  + +  +D G + C   
Sbjct: 22  NFEC-DKMTPKSEFSWSKDYVST--EDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVT 78

Query: 319 SVAGSTT--------VRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIAC-------- 362
              G  +        ++  L +      P                 +R            
Sbjct: 79  DTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNA 138

Query: 363 ---------------------------------DLRETDSGLYTCTASSESGETSWSASL 389
                                             L++ D G YT            +  L
Sbjct: 139 KVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVL 198

Query: 390 SVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLG 429
             +                       P  +      VT  
Sbjct: 199 VGDVFKKLQKEAEFQRQE--WIRKQGPHFVEYLSWEVTGE 236

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score =  112 bits (281), Expect = 1e-29
 Identities = 35/108 (32%), Positives = 43/108 (39%), Gaps = 3/108 (2%)

Query: 400 VHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGW 459
           +H          PP  PV LN TR +VTL W +PE  GG    +  Y VE          
Sbjct: 1   MHHHHHHSSPIDPPGKPVPLNITRHTVTLKWAKPEYTGG--FKITSYIVEKRDLPNGRWL 58

Query: 460 VVAAHRITSTSITVSDLKPDTSYMFIVRAENSHG-LGIPSPVSPITRT 506
                 I     TVS L  D +Y F V A+N+ G +  PS  S     
Sbjct: 59  KANFSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITC 106

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score =  114 bits (286), Expect = 4e-29
 Identities = 48/236 (20%), Positives = 74/236 (31%), Gaps = 51/236 (21%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI--- 466
             PP  P +   +  SV L W  P   G    P++ + V+Y     +  W      I   
Sbjct: 2   TYPPTPPNVTRLSDESVMLRWMVPRNDGL---PIVIFKVQYRMVGKRKNWQTTNDNIPYG 58

Query: 467 ---------TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHL 517
                     S + +V+DLKP  +Y F + A  S+     S  S         +L P   
Sbjct: 59  KPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDP--- 115

Query: 518 LDEARARLGTKVVNLRELIPTASTAVRITWEV---SWGSVPQHLLDEARARLGTKVVNLR 574
                         L  +   + TAV + W +   +   +            G       
Sbjct: 116 --------MPVPELLE-IEEYSETAVVLHWSLASDADEHLIT----------GYYA---- 152

Query: 575 ELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGA 630
              P++S        +Y  AT+   A   S+ +  L   T YEF L  F       
Sbjct: 153 YYRPSSSA------GEYFKATIEG-AHARSFKIAPLETATMYEFKLQSFSAASASE 201

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 84.9 bits (210), Expect = 6e-19
 Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 4/98 (4%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHR-ITS 468
              P    I   +  +V L W            + GY   Y  S     +  A      +
Sbjct: 116 MPVPELLEIEEYSETAVVLHWSLASDADEH--LITGYYAYYRPSSSAGEYFKATIEGAHA 173

Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVS-PITR 505
            S  ++ L+  T Y F +++ ++      S +    T+
Sbjct: 174 RSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQ 211

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  114 bits (287), Expect = 6e-29
 Identities = 34/141 (24%), Positives = 51/141 (36%), Gaps = 11/141 (7%)

Query: 70  IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT-----GRAKILDDRS 124
            +P    +     V + + V F C   G+P P+I W ++  +        G        S
Sbjct: 15  TRP-ERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWS 73

Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDD----FRAEPKDTRVASGETAL 180
           L +E+V P D G Y C VEN  GSI    +L V              P +     G    
Sbjct: 74  LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVE 133

Query: 181 LECGPPKGQPEPTLHWKKNGQ 201
             C       +P + W K+ +
Sbjct: 134 FHC-KVYSDAQPHIQWLKHVE 153

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 99.2 bits (247), Expect = 1e-23
 Identities = 37/202 (18%), Positives = 57/202 (28%), Gaps = 34/202 (16%)

Query: 165 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVR 224
           R + K   V +  T    C P  G P P++ W KNG+    E        R     L + 
Sbjct: 19  RMDKKLLAVPAANTVRFRC-PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVME 77

Query: 225 PL-------Y----WNVA-----------RPRANLNPRYIGRKMASLLIWNHPRVNRLSC 262
            +       Y     N               R+   P       A+        V    C
Sbjct: 78  SVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDV-EFHC 136

Query: 263 FAEGSPLPSVFWTQEGSQVLMFPGN----------AYGHLHVTQEGTLRIQGVQKEDAGF 312
                  P + W +         G           ++    V  +  LR+  V + D G 
Sbjct: 137 KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGE 196

Query: 313 FVCSALSVAGSTTVRAFLQVRE 334
           ++C A +  G      +L V  
Sbjct: 197 YLCRATNFIGVAEKAFWLSVHG 218

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 94.2 bits (234), Expect = 7e-22
 Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 21/139 (15%)

Query: 62  KLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT------- 114
            ++ +           P++ T + GS VEF C+V  D  P I W +      +       
Sbjct: 105 DVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGT 164

Query: 115 ---------GRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFR 165
                        +  D  L++ NV  +D G Y+C   N +G       L+VH  R    
Sbjct: 165 PYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPR---- 220

Query: 166 AEPKDTRVASGETALLECG 184
              ++  V + E   +   
Sbjct: 221 -AAEEELVEADEAGSVHHH 238

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 79.2 bits (195), Expect = 9e-17
 Identities = 33/192 (17%), Positives = 51/192 (26%), Gaps = 54/192 (28%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSA 317
           R  C A G+P PS+ W + G +      +  G + +  +  +L ++ V   D G + C  
Sbjct: 34  RFRCPAAGNPTPSISWLKNGREF--RGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV 91

Query: 318 LSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNL-------------ATGN---------- 354
            +  GS      L V E              N                 +          
Sbjct: 92  ENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKH 151

Query: 355 ---------SDLRRIACDLR-------------------ETDSGLYTCTASSESGETSWS 386
                     D       L+                   E D G Y C A++  G    +
Sbjct: 152 VEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKA 211

Query: 387 ASLSVEPRPGPH 398
             LSV       
Sbjct: 212 FWLSVHGPRAAE 223

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score =  110 bits (276), Expect = 7e-29
 Identities = 39/98 (39%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           PGPP+ P + + T+ SVTL W    P      P   Y +E FS  +   W   A+ + +T
Sbjct: 16  PGPPSKPQVTDVTKNSVTLSWQPGTPGT---LPASAYIIEAFSQSVSNSWQTVANHVKTT 72

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTL 507
             TV  L+P+T Y+F+VRA N  GL  PSP+S   RT 
Sbjct: 73  LYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQ 110

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score =  117 bits (294), Expect = 7e-29
 Identities = 54/368 (14%), Positives = 104/368 (28%), Gaps = 73/368 (19%)

Query: 86  GSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL---------------------DDRS 124
           G  VE  C           W+  +     G                           +  
Sbjct: 9   GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68

Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECG 184
           L I+N+  +D   YIC+VE+            V LL     A   DT +  G++  L   
Sbjct: 69  LIIKNLKIEDSDTYICEVED--------QKEEVQLLVFGLTANS-DTHLLQGQSLTLTLE 119

Query: 185 PPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLG--------------------WLRVR 224
            P     P++  +       ++  K+L +S+  L                      + V 
Sbjct: 120 SP-PGSSPSVQCRSPRGKN-IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 177

Query: 225 PLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPS--VFWTQEGSQVL 282
                 +        +       +  +        L   AE +      + +  +  +V 
Sbjct: 178 AFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVS 237

Query: 283 MFPGNAYGHLHVTQEGTLRIQ----GVQKEDAGFFVCSALSVAGSTTVRAFLQVREF--- 335
           +        L + ++  L +       Q   +G    +  +  G       L V      
Sbjct: 238 VKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQL 297

Query: 336 -----CVL-----PKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSW 385
                C +     PK   +L   N     S   +    +   ++G++ C   S+SG+   
Sbjct: 298 QKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAV-WVLNPEAGMWQCLL-SDSGQVLL 355

Query: 386 SASLSVEP 393
            +++ V P
Sbjct: 356 ESNIKVLP 363

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 69.8 bits (170), Expect = 6e-13
 Identities = 32/275 (11%), Positives = 61/275 (22%), Gaps = 46/275 (16%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGH---------------LHVTQEGTLRIQ 303
            L+C A         W       ++    ++                 L       L I+
Sbjct: 13  ELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIK 72

Query: 304 GVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQP--------------- 348
            ++ ED+  ++C              L V             GQ                
Sbjct: 73  NLKIEDSDTYICEVEDQKEEVQ----LLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSV 128

Query: 349 -------NLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVH 401
                      G   L  ++  L   DSG +TCT      +  +   + V       ++ 
Sbjct: 129 QCRSPRGKNIQGGKTL-SVS-QLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIV 186

Query: 402 RMPDSGLFPGPPAAPVILNTTRGSVTLGW---GEPEPRGGGVAPVIGYTVEYFSSDLQTG 458
              +             +    GS  L W        +      +    V          
Sbjct: 187 YKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPK 246

Query: 459 WVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHG 493
             +        ++  +  +   S    +  E   G
Sbjct: 247 LQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTG 281

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 25/158 (15%), Positives = 45/158 (28%), Gaps = 32/158 (20%)

Query: 67  EALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM--------PTGRAK 118
           E +   FP++   +    SG +  +           I +   + ++        P  +  
Sbjct: 192 EQVEFSFPLAFTVEKLTGSGEL-WWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMG 250

Query: 119 ILDDRSLQIENVGPQ--DEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASG 176
                 L +    PQ    G     +E   G +    +L V                A+ 
Sbjct: 251 KKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVV--------------MRATQ 296

Query: 177 ETALLEC---GPPKGQPEPTLHWKKNGQFIDLESSKSL 211
               L C   GP    P+  L  K   +  + + SK  
Sbjct: 297 LQKNLTCEVWGPTS--PKLMLSLKLENK--EAKVSKRE 330

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 9/79 (11%), Positives = 26/79 (32%), Gaps = 12/79 (15%)

Query: 84  LSGSVVEFVCRVGGDPLPTIL--WRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICD 141
            +       C V G   P ++   + ++ +    +         +   V   + G++ C 
Sbjct: 294 ATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSK-------REKAVWVLNPEAGMWQCL 346

Query: 142 VENLVGSISLRASLTVHLL 160
           + +   S  +     + +L
Sbjct: 347 LSD---SGQVLLESNIKVL 362

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score =  108 bits (271), Expect = 2e-28
 Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 2/98 (2%)

Query: 409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
              PP    + + T  +VT+ W  P+  G   A + GY +EY     +   V     I  
Sbjct: 7   GTSPPTLLTVDSVTDTTVTMRWRPPDHIGA--AGLDGYVLEYCFEGTEDWIVANKDLIDK 64

Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
           T  T++ L  D      V+A N+ G   P   S     
Sbjct: 65  TKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILV 102

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score =  111 bits (280), Expect = 7e-28
 Identities = 45/277 (16%), Positives = 75/277 (27%), Gaps = 45/277 (16%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPTGRAKILDDRSLQIEN 129
           K     +P   +V     V   C V   P   +  W  +     T         S +I +
Sbjct: 1   KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQT------STPSYRITS 54

Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQ 189
               D G Y C       S      + + + R     +        GE   L C   K +
Sbjct: 55  ASVNDSGEYRCQRGLSGRS----DPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDK 110

Query: 190 PEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP----LYW----NVARPR---ANLN 238
               + + +NG+        S       L  L+        Y        R      ++ 
Sbjct: 111 LVYNVLYYRNGKAFKFFHWNS------NLTILKTNISHNGTYHCSGMGKHRYTSAGISVT 164

Query: 239 PRYIGRKMASLLIWNHPRVN----RLSCFAEGSPLPSV----FWTQEGSQVLMFPGNAYG 290
            + +            P +      LSC  +           F    GS+ L        
Sbjct: 165 VKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLR------- 217

Query: 291 HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR 327
                     +I   ++ED+G + C A +  G+   R
Sbjct: 218 --GRNTSSEYQILTARREDSGLYWCEAATEDGNVLKR 252

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 79.6 bits (196), Expect = 9e-17
 Identities = 48/272 (17%), Positives = 74/272 (27%), Gaps = 67/272 (24%)

Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL---GWLRV 223
           +P    V   ET  L C         +  W  NG      S+ S  ++  ++   G    
Sbjct: 7   QPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQ-TSTPSYRITSASVNDSGE--- 62

Query: 224 RPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNR------LSCFAEGS-PLPSVFWTQ 276
              Y          +P  +      LL+    RV        L C A     + +V + +
Sbjct: 63  ---YRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYR 119

Query: 277 EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFC 336
            G     F  N            L I        G + CS +     T+    + V+E  
Sbjct: 120 NGKAFKFFHWN----------SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKE-- 167

Query: 337 VLPKGTFTLGQPNLATGNSDLRRIACD--------------------------------- 363
            L                 +L  ++C+                                 
Sbjct: 168 -LFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQ 226

Query: 364 ---LRETDSGLYTCTASSESGE-TSWSASLSV 391
               R  DSGLY C A++E G     S  L +
Sbjct: 227 ILTARREDSGLYWCEAATEDGNVLKRSPELEL 258

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 64.6 bits (157), Expect = 1e-11
 Identities = 42/264 (15%), Positives = 69/264 (26%), Gaps = 67/264 (25%)

Query: 260 LSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           L C     P   S  W   G+               T   + RI      D+G + C   
Sbjct: 21  LHCEVLHLPGSSSTQWFLNGTATQ------------TSTPSYRITSASVNDSGEYRCQRG 68

Query: 319 SVAGSTTVRA-------FLQVREFCVLPKGTFTL------------------GQP-NLAT 352
               S  ++         LQV            L                  G+      
Sbjct: 69  LSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFH 128

Query: 353 GNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGP 412
            NS+L  I      + +G Y C+   +   TS   S++V+       ++    S L  G 
Sbjct: 129 WNSNLT-IL-KTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEG- 185

Query: 413 PAAPVILNTTRGSVTL---GWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
                        VTL        +       P +     ++             R TS+
Sbjct: 186 -----------NLVTLSCETKLLLQR------PGLQLYFSFYMGSKTLR-----GRNTSS 223

Query: 470 SITVSDLKPDTSYMFIVRAENSHG 493
              +   + + S ++   A    G
Sbjct: 224 EYQILTARREDSGLYWCEAATEDG 247

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 61.1 bits (148), Expect = 2e-10
 Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 4/94 (4%)

Query: 69  LIKPFPISEPSDATVLSGSVVEFVCRVGGDPL-PTILWRRDDGKMPTGRAKILDDRSLQI 127
           L     ++    + +L G++V   C        P +                      QI
Sbjct: 168 LFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQI 227

Query: 128 ENVGPQDEGLYICDVENLVGSI---SLRASLTVH 158
                +D GLY C+     G++   S    L V 
Sbjct: 228 LTARREDSGLYWCEAATEDGNVLKRSPELELQVL 261

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  109 bits (274), Expect = 1e-27
 Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 18/166 (10%)

Query: 68  ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRDDGKMP----TGRAKILD 121
             + PFP  E  +  V  G  +  +C          +  W  ++  +       R     
Sbjct: 5   GYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT 64

Query: 122 DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDD---------FRAEPKDTR 172
           + +L I NV   D+G Y C V +   + S+ +     +   +            + KD  
Sbjct: 65  NGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVY 124

Query: 173 VASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
              G+   LEC    G P P + W+K  +   + S+  +  S   L
Sbjct: 125 ALMGQNVTLEC-FALGNPVPDIRWRKVLE--PMPSTAEISTSGAVL 167

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  106 bits (266), Expect = 1e-26
 Identities = 26/87 (29%), Positives = 40/87 (45%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVG 131
              + +  D   L G  V   C   G+P+P I WR+    MP+          L+I N+ 
Sbjct: 114 ADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQ 173

Query: 132 PQDEGLYICDVENLVGSISLRASLTVH 158
            +DEG+Y C+ EN+ G    +A + V 
Sbjct: 174 LEDEGIYECEAENIRGKDKHQARIYVQ 200

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 96.1 bits (239), Expect = 6e-23
 Identities = 42/203 (20%), Positives = 68/203 (33%), Gaps = 38/203 (18%)

Query: 160 LRDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQ--FIDLESSKSLDLSRR 216
           L      E  + RV  G+  +L C PP   P+  +  W  N    FI ++  + +  +  
Sbjct: 7   LDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG 66

Query: 217 TLGWLRVRP----LYWNVARPRANLNPRYIGRKMASLLIWNHPRVNR------------- 259
            L    V       Y        + +           LI    R  +             
Sbjct: 67  NLYIANVEASDKGNYSCFVS---SPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDV 123

Query: 260 ---------LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDA 310
                    L CFA G+P+P + W +    +   P  A      T    L+I  +Q ED 
Sbjct: 124 YALMGQNVTLECFALGNPVPDIRWRKVLEPM---PSTAE---ISTSGAVLKIFNIQLEDE 177

Query: 311 GFFVCSALSVAGSTTVRAFLQVR 333
           G + C A ++ G    +A + V+
Sbjct: 178 GIYECEAENIRGKDKHQARIYVQ 200

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 64.9 bits (158), Expect = 4e-12
 Identities = 26/178 (14%), Positives = 47/178 (26%), Gaps = 48/178 (26%)

Query: 259 RLSCFAEGSPLP--SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 316
            L C          S  W      V +              G L I  V+  D G + C 
Sbjct: 27  VLLCDPPYHFPDDLSYRWLLNEFPVFITMDK--RRFVSQTNGNLYIANVEASDKGNYSCF 84

Query: 317 ALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIA-------C------- 362
             S + + +V +         +P+ T      ++     D+  +        C       
Sbjct: 85  VSSPSITKSVFSKFIPLI--PIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPV 142

Query: 363 ----------------------------DLRETDSGLYTCTASSESGETSWSASLSVE 392
                                       +++  D G+Y C A +  G+    A + V+
Sbjct: 143 PDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120

 Score =  104 bits (262), Expect = 6e-27
 Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 18/128 (14%)

Query: 380 SGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGG 439
           SG +  S  + +  RPGP               P    I +    +V L W  P+  G  
Sbjct: 3   SGSSGASIDIQIIDRPGP---------------PQIVKIEDVWGENVALTWTPPKDDGN- 46

Query: 440 VAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSP 499
            A + GYT++         W         TS T+++L     Y F V +EN  GL   + 
Sbjct: 47  -AAITGYTIQKADKK-SMEWFTVIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDAT 104

Query: 500 VSPITRTL 507
           ++  +  +
Sbjct: 105 MTKESAVI 112

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score =  103 bits (259), Expect = 1e-26
 Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P  PA+PV+       ++L W +P          I Y +E              +     
Sbjct: 8   PSMPASPVLTKAGITWLSLQWSKPSGTPS--DEGISYILEMEEET-SGYGFKPKYDGEDL 64

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
           + TV +L+  T Y F V A NS G   PS V   T  
Sbjct: 65  AYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTC 101

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score =  103 bits (258), Expect = 1e-25
 Identities = 36/160 (22%), Positives = 57/160 (35%), Gaps = 21/160 (13%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRV--GGDPLPTILWRRDDGKMPTG-------------R 116
           PF +  P + T   G      C++   G+P P + W RD   +                +
Sbjct: 4   PF-VGNPGNITGARGLTGTLRCQLQVQGEP-PEVHWLRDGQILELADSTQTQVPLGEDEQ 61

Query: 117 AKILDDRSLQIENVGPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVAS 175
              +    L+I ++   D G Y C V     +  S    + +  L   F  EP+D  VA+
Sbjct: 62  DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGL-PYFLEEPEDRTVAA 120

Query: 176 GETALLECGPPKGQPEPT-LHWKKNGQFIDLESSKSLDLS 214
                L C   +G PEP  L W ++   +          S
Sbjct: 121 NTPFNLSC-QAQGPPEPVDLLWLQDAVPLATAPGHGPQRS 159

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 82.3 bits (203), Expect = 3e-18
 Identities = 42/204 (20%), Positives = 66/204 (32%), Gaps = 41/204 (20%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL----- 218
           F   P +   A G T  L C        P +HW ++GQ ++L  S    +          
Sbjct: 5   FVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDW 64

Query: 219 ---GWLRVRPL-------YWNVAR--------PRANLN---PRYIGRKMASLLIWNHPRV 257
                LR+  L       Y  +              +      Y   +     +  +   
Sbjct: 65  IVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPF 124

Query: 258 NRLSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 316
             LSC A+G P P  + W Q+   +   PG+         + +L + G+       F C 
Sbjct: 125 -NLSCQAQGPPEPVDLLWLQDAVPLATAPGHG-------PQRSLHVPGL--NKTSSFSCE 174

Query: 317 ALSVAGSTTVRAFLQVREFCVLPK 340
           A +  G TT R         VLP+
Sbjct: 175 AHNAKGVTTSRTATIT----VLPQ 194

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 76.9 bits (189), Expect = 3e-16
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPT-ILWRRDDGKMPTGRAKILDDRSLQIEN 129
            P+ + EP D TV + +     C+  G P P  +LW +D   + T        RSL +  
Sbjct: 106 LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP-GHGPQRSLHVPG 164

Query: 130 VGPQDEGLYICDVENLVGSI-SLRASLTV 157
           +       + C+  N  G   S  A++TV
Sbjct: 165 L--NKTSSFSCEAHNAKGVTTSRTATITV 191

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 65.3 bits (159), Expect = 2e-12
 Identities = 33/175 (18%), Positives = 56/175 (32%), Gaps = 40/175 (22%)

Query: 259 RLSC--FAEGSPLPSVFWTQEGSQV-------LMFPGNAYGHLHVTQEGTLRIQGVQKED 309
            L C    +G P P V W ++G  +          P              LRI  +Q  D
Sbjct: 21  TLRCQLQVQGEP-PEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSD 79

Query: 310 AGFFVCSALSVAGSTTVR-AFLQVRE---FCVLPK-------GTFTL-----GQPN---- 349
            G + C       +   +  ++ +     F   P+         F L     G P     
Sbjct: 80  TGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDL 139

Query: 350 --------LATGNSDLRRIA-CDLRETDSGLYTCTASSESGET-SWSASLSVEPR 394
                   LAT      + +        +  ++C A +  G T S +A+++V P+
Sbjct: 140 LWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTATITVLPQ 194

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121

 Score =  100 bits (252), Expect = 2e-25
 Identities = 31/101 (30%), Positives = 42/101 (41%), Gaps = 5/101 (4%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI--T 467
           P  P  P I   +  SV + W  P   GG   P+  + VEY        W++A   I  +
Sbjct: 18  PEAPDRPTISTASETSVYVTW-IPRGNGG--FPIQSFRVEYKKLKKVGDWILATSAIPPS 74

Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLG 508
             S+ ++ L+   SY F VRA N  G   PS  S      G
Sbjct: 75  RLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG 115

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score =  100 bits (250), Expect = 2e-25
 Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 2/97 (2%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
              P    + + T  + TL W  P+  G     + GY VEY     +         +   
Sbjct: 9   TSAPQHLTVEDVTDTTTTLKWRPPDRIGA--GGIDGYLVEYCLEGSEEWVPANKEPVERC 66

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
             TV DL      +F V   N  G   P+ +      
Sbjct: 67  GFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTI 103

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score =  105 bits (263), Expect = 2e-25
 Identities = 38/291 (13%), Positives = 72/291 (24%), Gaps = 44/291 (15%)

Query: 79  SDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR---SLQIENVGPQDE 135
            +  +   S     C         ++W R   + P   AK  D      L + N+   D 
Sbjct: 8   PELVLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDT 63

Query: 136 GLYICDVENLVGSISLRAS---LTVHLLRDDFRAEPKDTR---VASGETALLECGPPKGQ 189
           G Y C   +  G  +       + V      F     +     +       + C      
Sbjct: 64  GEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRV--TD 121

Query: 190 PEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASL 249
           P+  +   +    + L         +R    +     Y         +  R +      +
Sbjct: 122 PQLVVTLHEKKGDVALPVPYD---HQRGFSGIFEDRSYICKTT----IGDREVDSDAYYV 174

Query: 250 LIWNHPRVN----------------RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHL- 292
                  +N                 L C   G+ + +  WT    +           L 
Sbjct: 175 YRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLL 234

Query: 293 --HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKG 341
                    L I   + ED+G + C+             + +    V+  G
Sbjct: 235 DMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINIT---VVESG 282

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 73.2 bits (179), Expect = 2e-14
 Identities = 23/146 (15%), Positives = 34/146 (23%), Gaps = 9/146 (6%)

Query: 74  PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQ 133
             +E     +   + +   CRV  DP   +      G +             Q    G  
Sbjct: 98  NDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVP-----YDHQRGFSGIF 151

Query: 134 DEGLYICDVENLVGSISLRASLTVHLLRD--DFRAEPKDTRVASGETALLECGPPKGQPE 191
           ++  YIC        +   A     L     +       T V  GE   L C    G   
Sbjct: 152 EDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMC-IVIGNEV 210

Query: 192 PTLHWKKNGQFIDLESSKSLDLSRRT 217
               W    +          D     
Sbjct: 211 VNFEWTYPRKESGRLVEPVTDFLLDM 236

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 71.7 bits (175), Expect = 6e-14
 Identities = 14/103 (13%), Positives = 27/103 (26%), Gaps = 9/103 (8%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM---------PTGRAKILD 121
                       V  G  +  +C V G+ +    W     +                   
Sbjct: 181 SINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHI 240

Query: 122 DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDF 164
              L I +   +D G Y C+V   V       ++ + ++    
Sbjct: 241 RSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGH 283

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 47.8 bits (113), Expect = 5e-06
 Identities = 30/296 (10%), Positives = 66/296 (22%), Gaps = 87/296 (29%)

Query: 173 VASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR-RTLGWLRVRP------ 225
           +    T +L C          + W++  Q    E +K+ D +    L    +        
Sbjct: 12  LNVSSTFVLTC-----SGSAPVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEY 66

Query: 226 --LYWNVARPRANLNPR---YIGRKMASLLIWNHPRVN---------RLSCFAEGSPLPS 271
              + +      +   R   ++       L  +   +           + C     P   
Sbjct: 67  FCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLV 125

Query: 272 VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 331
           V   ++            G + +      +       +   ++C            A+  
Sbjct: 126 VTLHEKK-----------GDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYV 174

Query: 332 VREFCVLPKGTFTLGQPNL-------------ATGNSDLR-------------------- 358
            R    +     ++                    GN  +                     
Sbjct: 175 YRL--QVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDF 232

Query: 359 ------------RIACDLRETDSGLYTCTASSESGETSWSASLSVE-PRPGPHAVH 401
                        I       DSG YTC  +    +     ++++     G H  H
Sbjct: 233 LLDMPYHIRSILHIP-SAELEDSGTYTCNVTESVNDHQDEKAINITVVESGHHHHH 287

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 47.4 bits (112), Expect = 7e-06
 Identities = 22/180 (12%), Positives = 38/180 (21%), Gaps = 40/180 (22%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            L+C         V W +   +    P         T    L +  +   D G + C+  
Sbjct: 19  VLTCSGSAP----VVWERMSQEP---PQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHN 71

Query: 319 SVAG---STTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACD------------ 363
              G       R ++ V +  V              T  +++  I C             
Sbjct: 72  DSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEI-TIPCRVTDPQLVVTLHE 130

Query: 364 -----------------LRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDS 406
                                +   Y C  +    E    A      +     V      
Sbjct: 131 KKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQ 190

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score =  106 bits (264), Expect = 4e-25
 Identities = 45/327 (13%), Positives = 74/327 (22%), Gaps = 67/327 (20%)

Query: 73  FPISEPSDATVLSGSVVEFVCRVG-----------GDPLPTILWRRDDGKMPTGRAK--- 118
           + +       V         C +                 T++W                
Sbjct: 9   WGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFR 68

Query: 119 ------ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAE---PK 169
                   +   L        D G Y C + N      +   L V      F +    P 
Sbjct: 69  LPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPV 128

Query: 170 DTRVASGETALLEC----GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL------- 218
                      + C    G      +PT+ W      I   +  ++      L       
Sbjct: 129 HKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQ--NFNNVIPEGMNLSFLIALI 186

Query: 219 -----------------GWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVN-RL 260
                             +   R L   V     N  P  I      ++    P     +
Sbjct: 187 SNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLI 246

Query: 261 SCFA----EGSPLPSVFWTQEGSQVLMFPGNAY--------GHLHVTQEGTLRIQGVQKE 308
            C             V+WT +G +      +               T+   L I+ V  E
Sbjct: 247 PCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSE 306

Query: 309 DAGF-FVCSALSVAGSTTVRAFLQVRE 334
           D    +VC A S  G     A ++ + 
Sbjct: 307 DLKRSYVCHARSAKGEVAKAAKVKQKV 333

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 63.3 bits (153), Expect = 7e-11
 Identities = 31/222 (13%), Positives = 56/222 (25%), Gaps = 60/222 (27%)

Query: 162 DDFRAEP-KDTRVASGETALLECG----------PPKGQPEPTLHWKKNGQFIDLE--SS 208
           DD+  +  +  +V   E A ++C                   TL W    Q  DLE   +
Sbjct: 7   DDWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPIN 66

Query: 209 KSLDLSRRTL--GWLRVRPL-------YWNVARPRANLNPRYIGRKMASLLIWNHPRV-- 257
             L  +R +     L  RP        Y  + R     N  Y  +    L +        
Sbjct: 67  FRLPENRISKEKDVLWFRPTLLNDTGNYTCMLR-----NTTYCSKVAFPLEVVQKDSCFN 121

Query: 258 ---------------------NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 296
                                  +  +   S  P++ W     ++         +  + +
Sbjct: 122 SPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQN------FNNVIPE 175

Query: 297 EGTLRIQGVQKEDAGFFVCSA----LSVAGSTTVRAFLQVRE 334
              L        + G + C             T    ++V  
Sbjct: 176 GMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVG 217

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 59.5 bits (143), Expect = 1e-09
 Identities = 15/114 (13%), Positives = 30/114 (26%), Gaps = 19/114 (16%)

Query: 73  FPISEPSDATVLSGSVVEFVCRV----GGDPLPTILWRRDD--------------GKMPT 114
              ++        G  +   C V      D    + W  D                   +
Sbjct: 228 HSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHS 287

Query: 115 GRAKILDDRSLQIENVGPQDEGL-YICDVENLVGSISLRASLTVHLLRDDFRAE 167
                   + L I+ V  +D    Y+C   +  G ++  A +   +    +  E
Sbjct: 288 RTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPAPRYTVE 341

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 56.4 bits (135), Expect = 1e-08
 Identities = 29/291 (9%), Positives = 76/291 (26%), Gaps = 62/291 (21%)

Query: 259 RLSCFAEGSPLPSVFW--TQEGSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVC 315
           + +     S   ++ W  T++   +            +++E   L  +     D G + C
Sbjct: 37  KFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTC 96

Query: 316 SALSVAGSTTVRAFLQVRE--FCVLPKGTFTLGQPNLATGNSDLR--RIAC--------- 362
              +    + V   L+V +   C        + +  +  G   +    +           
Sbjct: 97  MLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPT 156

Query: 363 --------------------------DLRETDSGLYTCTASSESGETSWSASLSVEPRPG 396
                                         +++G YTC  +      ++  + ++  +  
Sbjct: 157 ITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVV 216

Query: 397 PHAVHRMPDSGLFPGPPAAPVILNTTRG-------SVTLGW-GEPEP-----RGGGVAPV 443
               + +P        P   V+     G       +V   +  +          G     
Sbjct: 217 GSPKNAVPP---VIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDD 273

Query: 444 IGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKP-DTSYMFIVRAENSHG 493
           I   V    S   +          +  +++  +   D    ++  A ++ G
Sbjct: 274 ITIDVTINESISHS---RTEDETRTQILSIKKVTSEDLKRSYVCHARSAKG 321

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 98.5 bits (246), Expect = 5e-25
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 1/90 (1%)

Query: 70  IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR-SLQIE 128
           + P   S   D  V+ G      C V G P+P I W  +   +   R+        L I+
Sbjct: 10  VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQ 69

Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVH 158
           +  P+D G Y C  EN +G +S  A +TVH
Sbjct: 70  DALPEDHGTYTCLAENALGQVSCSAWVTVH 99

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 61.6 bits (150), Expect = 5e-12
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 5/74 (6%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            L C   G+P+P + W   G  +                  L IQ    ED G + C A 
Sbjct: 30  VLQCSVRGTPVPRITWLLNGQPI-----QYARSTCEAGVAELHIQDALPEDHGTYTCLAE 84

Query: 319 SVAGSTTVRAFLQV 332
           +  G  +  A++ V
Sbjct: 85  NALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
           F +  KD  V  G+  +L+C   +G P P + W  NGQ I   +  + +     L
Sbjct: 14  FSSVLKDCAVIEGQDFVLQC-SVRGTPVPRITWLLNGQPIQ-YARSTCEAGVAEL 66

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 352 TGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSV 391
            G ++L  I  D    D G YTC A +  G+ S SA ++V
Sbjct: 61  AGVAELH-IQ-DALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 98.9 bits (247), Expect = 5e-25
 Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 6/97 (6%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P PP   V+  TT  SVTL W           PV  Y ++Y ++  + G       + +T
Sbjct: 8   PKPPIDLVVTETTATSVTLTWDSG-----NSEPVTYYGIQYRAAGTE-GPFQEVDGVATT 61

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
             ++  L P + Y F V A NS G G PS        
Sbjct: 62  RYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTG 98

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score =  101 bits (254), Expect = 6e-25
 Identities = 50/209 (23%), Positives = 72/209 (34%), Gaps = 41/209 (19%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           PGPP    +   T+ SVTL W  P   GG  + +  Y VE      +  +   A     T
Sbjct: 6   PGPPQDLKVKEVTKTSVTLTWDPPLLDGG--SKIKNYIVEK-RESTRKAYSTVATNCHKT 62

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV 529
           S  V  L+   SY F V AEN +G+G+P+  +   +        P  +            
Sbjct: 63  SWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPL-PPGKI------------ 109

Query: 530 VNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 589
                L+     +V ++WE      P+H  D     LG  V           T     W 
Sbjct: 110 ----TLMDVTRNSVSLSWE-----KPEH--DGGSRILGYIV--------EMQTKGSDKW- 149

Query: 590 KYNMATVMNAATTTSYTVTHLRKFTKYEF 618
                        T  T+T L +  +Y F
Sbjct: 150 -----ATCATVKVTEATITGLIQGEEYSF 173

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score = 93.2 bits (232), Expect = 6e-22
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P PP    +++ TR SV+L W +PE  GG    ++GY VE   +     W   A  +  T
Sbjct: 103 PLPPGKITLMDVTRNSVSLSWEKPEHDGGS--RILGYIVEM-QTKGSDKWATCA-TVKVT 158

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
             T++ L     Y F V A+N  G+  P  +S     
Sbjct: 159 EATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIA 195

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 98.6 bits (246), Expect = 7e-25
 Identities = 27/110 (24%), Positives = 39/110 (35%), Gaps = 2/110 (1%)

Query: 395 PGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSD 454
            G    H    +G  P  P   V    +   + L W  P     G    + Y+V Y    
Sbjct: 3   SGSSGEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHG--DNLTYSVFYTKEG 60

Query: 455 LQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
           +    V          +T+ +L P T Y+F V A+N HG G  S    + 
Sbjct: 61  IARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVE 110

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 98.2 bits (245), Expect = 9e-25
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 4/98 (4%)

Query: 65  AKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKIL--- 120
           + +  +    +++P   TV  G    F C   G+P+PT+ W R    +  + R ++    
Sbjct: 8   SSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK 67

Query: 121 DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
              + +I +V   DEG Y   VEN  G      +LT+ 
Sbjct: 68  YKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 65.5 bits (160), Expect = 3e-13
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           R SC  +G P+P+V W ++G  +       +       + T  I  VQ  D G +     
Sbjct: 33  RFSCDTDGEPVPTVTWLRKGQVL--STSARHQVTTTKYKSTFEISSVQASDEGNYSVVVE 90

Query: 319 SVAGSTTVRAFLQVRE 334
           +  G       L +++
Sbjct: 91  NSEGKQEAEFTLTIQK 106

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 203
              +P+   V  GE+A   C    G+P PT+ W + GQ +
Sbjct: 17  ILTKPRSMTVYEGESARFSC-DTDGEPVPTVTWLRKGQVL 55

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 5/30 (16%), Positives = 15/30 (50%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVE 392
            ++ +D G Y+    +  G+     +L+++
Sbjct: 76  SVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 95.9 bits (239), Expect = 4e-24
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 2/89 (2%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT--GRAKILDDRSLQIE 128
            P  +  P++ T+         C+  GDPLP I W ++    P    RA I +  +LQI+
Sbjct: 8   PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIK 67

Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTV 157
           N+   D G Y C   +  G  S  A L V
Sbjct: 68  NLRISDTGTYTCVATSSSGETSWSAVLDV 96

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 75.1 bits (185), Expect = 1e-16
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            L C A G PLP + W +EG               + ++GTL+I+ ++  D G + C A 
Sbjct: 27  LLKCKATGDPLPVISWLKEGFTFPG----RDPRATIQEQGTLQIKNLRISDTGTYTCVAT 82

Query: 319 SVAGSTTVRAFLQVRE 334
           S +G T+  A L V E
Sbjct: 83  SSSGETSWSAVLDVTE 98

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 19/31 (61%), Positives = 23/31 (74%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEP 393
           +LR +D+G YTC A+S SGETSWSA L V  
Sbjct: 68  NLRISDTGTYTCVATSSSGETSWSAVLDVTE 98

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
               P +  +A   TALL+C    G P P + W K G        ++    + TL
Sbjct: 11  ILQGPANQTLAVDGTALLKC-KATGDPLPVISWLKEGFTFPGRDPRATIQEQGTL 64

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 95.4 bits (238), Expect = 6e-24
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK-MPTGRAKILDD---RSLQ 126
           KP  ++   D TV S SV +F  +  G+P PT +W +D       G+ K+ +D     L+
Sbjct: 6   KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLE 65

Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTVH 158
           I      D GLY C V+N  GS+S    LT+ 
Sbjct: 66  IHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
           + +  A G P P+  WT++G  +    G   G   ++++     L I      D+G + C
Sbjct: 25  KFAVKATGEPRPTAIWTKDGKAI--TQG---GKYKLSEDKGGFFLEIHKTDTSDSGLYTC 79

Query: 316 SALSVAGSTTVRAFLQVR 333
           +  + AGS +    L ++
Sbjct: 80  TVKNSAGSVSSSCKLTIK 97

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 203
                +DT V+S   A        G+P PT  W K+G+ I
Sbjct: 9   IVTGLQDTTVSSDSVAKFAV-KATGEPRPTAIWTKDGKAI 47

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score =  101 bits (253), Expect = 8e-24
 Identities = 38/314 (12%), Positives = 93/314 (29%), Gaps = 59/314 (18%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRV----GGDPLPTILWRRDDGKMPT------------- 114
              +          G+ V   C          +  + W++                    
Sbjct: 15  SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74

Query: 115 -----GRAKILDDR----SLQIENVGPQDEGLYICDVENL-VGSISLRASLTVHLLRDDF 164
                 R + L       ++++  +  +DEG+YIC+      G+   + +LTV     ++
Sbjct: 75  LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNW 134

Query: 165 RAEPKDT----RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS-KSLDLSRRTLG 219
               +      +    +  +  C    G+P   + W+   +        ++ + +   + 
Sbjct: 135 IEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVIS 194

Query: 220 WLRVRPLYWNVARP---RANLNPRYIGRKMASLLIWNHPRVN---------------RLS 261
             R+ P      +      N       ++  +L +   P V                +L+
Sbjct: 195 RYRLVPSREAHQQSLACIVN-YHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLT 253

Query: 262 CFAEGSPLPS-VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 320
           C A+ +P  +   WT     +          +            +    AG ++C A + 
Sbjct: 254 CKADANPPATEYHWTTLNGSLP-------KGVEAQNRTLFFKGPINYSLAGTYICEATNP 306

Query: 321 AGSTTVRAFLQVRE 334
            G+ + +  + + E
Sbjct: 307 IGTRSGQVEVNITE 320

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 66.3 bits (161), Expect = 6e-12
 Identities = 36/303 (11%), Positives = 63/303 (20%), Gaps = 76/303 (25%)

Query: 168 PKDTRVASGETALLEC---GPPKGQPEPTLHWKKNGQFIDLES---SKSLDLSRRTLGWL 221
                   G   +L C    P        + W+K+           + S+ +S       
Sbjct: 21  NDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRE 80

Query: 222 RVRPLY----------WNVARP-------RANLNPRYIGRKMASLLIWNHPRVNR----- 259
           RV  L             +               P        +L +   P         
Sbjct: 81  RVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQA 140

Query: 260 --------------LSCF-AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQG 304
                          +C  A G P   V W         +      +  VT     R+  
Sbjct: 141 VLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVP 200

Query: 305 VQKEDAGFFVCSALSVAGSTTVRAFLQVR---EFCVLPKGTFTL-------------GQP 348
            ++       C              L V+   E  +                       P
Sbjct: 201 SREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANP 260

Query: 349 ----------------NLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVE 392
                            +   N  L      +  + +G Y C A++  G  S    +++ 
Sbjct: 261 PATEYHWTTLNGSLPKGVEAQNRTLFFKG-PINYSLAGTYICEATNPIGTRSGQVEVNIT 319

Query: 393 PRP 395
              
Sbjct: 320 EAA 322

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 65.5 bits (159), Expect = 1e-11
 Identities = 19/146 (13%), Positives = 32/146 (21%), Gaps = 14/146 (9%)

Query: 69  LIKPFPISEPSDATV-----LSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDD 122
           + KP    E + A +         V+   C    G P   + W          +     +
Sbjct: 128 MAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPN 187

Query: 123 R------SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASG 176
                    ++       +    C V   +       +L V    +              
Sbjct: 188 GTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQR 247

Query: 177 ETALLECGPPKGQPEPT-LHWKKNGQ 201
               L C      P  T  HW     
Sbjct: 248 MDVKLTC-KADANPPATEYHWTTLNG 272

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 95.1 bits (237), Expect = 9e-24
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 6/98 (6%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY---FSSDLQTGWVVAAHRI 466
           P  P+   +      +  + + EPE  GG   P++ Y  E+         + W  A    
Sbjct: 7   PSSPSIDQV-EPYSSTAQVQFDEPEATGG--VPILKYKAEWRAVGEEVWHSKWYDAKEAS 63

Query: 467 TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
               +T+  LKP+T+Y   + A N  GLG  S  S   
Sbjct: 64  MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK 101

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score = 94.7 bits (236), Expect = 2e-23
 Identities = 35/132 (26%), Positives = 48/132 (36%), Gaps = 20/132 (15%)

Query: 381 GETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGV 440
           G +  S ++S    P              PGPP    I N    SVTL +    P   G 
Sbjct: 1   GSSGSSGTISSGVPPEL------------PGPPTNLGISNIGPRSVTLQF---RPGYDGK 45

Query: 441 APVIGYTVEYFSSDLQTG-----WVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLG 495
             +  + VE     +  G         ++   + S+ V DL P T Y F +R  N  G  
Sbjct: 46  TSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTS 105

Query: 496 IPSPVSPITRTL 507
            PS  S   +TL
Sbjct: 106 PPSQPSRKIQTL 117

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 94.0 bits (234), Expect = 3e-23
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 6/100 (6%)

Query: 65  AKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG--KMPTGRAKILDD 122
           + E    P  I +P    VL G  V+  C++   P P + W+R++   +  T R  +  D
Sbjct: 9   SHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQD 68

Query: 123 R----SLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
                +L I++V  +D G Y     N  G  +    L V 
Sbjct: 69  NTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT 108

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 65.1 bits (159), Expect = 4e-13
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 8/80 (10%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG----TLRIQGVQKEDAGFFV 314
           +L C     P P +FW +   +++ F  +    + + Q+     TL I+ V K+DAG++ 
Sbjct: 34  KLECQISAIPPPKLFWKRNN-EMVQFNTD---RISLYQDNTGRVTLLIKDVNKKDAGWYT 89

Query: 315 CSALSVAGSTTVRAFLQVRE 334
            SA++ AG TT    L V  
Sbjct: 90  VSAVNEAGVTTCNTRLDVTA 109

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 146 VGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDL 205
           +G      S         F  +P+  +V  G++  LEC      P P L WK+N + +  
Sbjct: 1   MGHHHHHHSHEHKR-APMFIYKPQSKKVLEGDSVKLEC-QISAIPPPKLFWKRNNEMVQF 58

Query: 206 ESSK 209
            + +
Sbjct: 59  NTDR 62

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 95.3 bits (237), Expect = 4e-23
 Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 5/113 (4%)

Query: 70  IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDR----S 124
           +KP+      D  V+ GS   F C+V G P P ++W +DD  +  +   +I  D     S
Sbjct: 40  VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS 99

Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGE 177
           L I  V   D+  Y C   N +G  +  A L V  +  +   E +       E
Sbjct: 100 LTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEGEGEEDEEEE 152

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 61.0 bits (148), Expect = 3e-11
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 9/80 (11%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG----TLRIQGVQKEDAGFFV 314
           R  C  EG P P V W ++ + V         H  +  +     +L I  V  +D   + 
Sbjct: 60  RFDCKVEGYPDPEVMWFKDDNPV-----KESRHFQIDYDEEGNCSLTISEVCGDDDAKYT 114

Query: 315 CSALSVAGSTTVRAFLQVRE 334
           C A++  G  T  A L V  
Sbjct: 115 CKAVNSLGEATCTAELLVET 134

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 4/80 (5%)

Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTVHLLRD---DFRAEPKDTRVASGETALLEC 183
           +                N V +                  F     D  V  G  A  +C
Sbjct: 4   MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63

Query: 184 GPPKGQPEPTLHWKKNGQFI 203
              +G P+P + W K+   +
Sbjct: 64  -KVEGYPDPEVMWFKDDNPV 82

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
           ++   D   YTC A +  GE + +A L VE   
Sbjct: 104 EVCGDDDAKYTCKAVNSLGEATCTAELLVETMG 136

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score = 93.6 bits (233), Expect = 4e-23
 Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 410 PGPPAAPVILNTTRG-SVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
           PGP   P +    +   + L WG P   GG  +P+  Y+VE   S ++       ++ + 
Sbjct: 9   PGPCLPPRLQGRPKAKEIQLRWGPPLVDGG--SPISCYSVEM--SPIEKDEPREVYQGSE 64

Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLG 508
              TVS L P  +Y F +RA N  G G  S    IT   G
Sbjct: 65  VECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPG 104

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score = 93.2 bits (232), Expect = 6e-23
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 4/97 (4%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P  P  P I N T+ S+TL W  P   G   + +  + +E+        +       +  
Sbjct: 18  PDIPNPPRIANRTKNSLTLQWKAPSDNG---SKIQNFVLEWDEGKGNGEFCQCY-MGSQK 73

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
              ++ L P     F + A N +G    S       +
Sbjct: 74  QFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTS 110

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 97.9 bits (243), Expect = 8e-23
 Identities = 41/289 (14%), Positives = 76/289 (26%), Gaps = 37/289 (12%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
            P      S+  V +G  +   C         + W                      E  
Sbjct: 12  PPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKT---YFNEMVENKKNEWIQEKA 64

Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQP 190
                G Y C   N + S      + V      F              AL+ C P     
Sbjct: 65  EATRTGTYTCSNSNGLTS---SIYVFVRDPAKLFL-VGLPLFGKEDSDALVRC-PLTDPQ 119

Query: 191 EPTLHWKK-NGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASL 249
                  + +G+ +  + +   +           R  +    R  A  +  ++     +L
Sbjct: 120 VSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTL 179

Query: 250 LIWNHPRVN------------------RLSCFAEGSPLP-SVFWTQEGSQVLMFPGNAY- 289
            +    +                     + C  +      +  W +   Q        + 
Sbjct: 180 KVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHN 239

Query: 290 ----GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
               G  +  ++ TL I   + +D+G F+C A +  GS  V   L+V E
Sbjct: 240 SWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVE 288

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 55.9 bits (134), Expect = 1e-08
 Identities = 22/181 (12%), Positives = 42/181 (23%), Gaps = 54/181 (29%)

Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQK-EDAGFFVCSAL 318
           + C      +      +   + L              +  + I+ V++        C+A 
Sbjct: 111 VRCPLTDPQVSQYSLIECDGKSLPTDLT----FVPNPKAGITIKNVKRAYHRLCVRCAAQ 166

Query: 319 SVAGSTTVRAF-LQVREFCVLPKGTFTLGQPNLATGNSDLRRIAC--------------- 362
                     F L+VRE              +L         + C               
Sbjct: 167 RDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTF-TVVCTIKDVSTSVNSMWLK 225

Query: 363 --------------------------------DLRETDSGLYTCTASSESGETSWSASLS 390
                                             R  DSG++ C A++  G  + + +L 
Sbjct: 226 MNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLK 285

Query: 391 V 391
           V
Sbjct: 286 V 286

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 92.4 bits (230), Expect = 1e-22
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 2/94 (2%)

Query: 67  EALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDD-RS 124
              + P       + T   G  +E  C   G+P P I+W +D+  +       + D  R+
Sbjct: 6   LERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN 65

Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
           L I  V  +DEGLY C   +++G   + A   + 
Sbjct: 66  LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 99

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 70.1 bits (172), Expect = 7e-15
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG-TLRIQGVQKEDAGFFVCSA 317
            +SC A G+P P + W ++   ++         + +      L I+ V+KED G + C A
Sbjct: 29  EVSCTASGNPPPQIMWFKDNETLV-----EDSGIVLKDGNRNLTIRRVRKEDEGLYTCQA 83

Query: 318 LSVAGSTTVRAFLQVRE 334
            SV G   V AF  +  
Sbjct: 84  CSVLGCAKVEAFFIIEG 100

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
                ++   + GE+  + C    G P P + W K+ + +  +S   L    R L   RV
Sbjct: 13  ITGNLENQTTSIGESIEVSC-TASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRV 71

Query: 224 RP 225
           R 
Sbjct: 72  RK 73

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
            +R+ D GLYTC A S  G     A   +E   
Sbjct: 70  RVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 102

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 92.5 bits (230), Expect = 1e-22
 Identities = 26/112 (23%), Positives = 38/112 (33%), Gaps = 6/112 (5%)

Query: 393 PRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFS 452
              G  A+         P  P   V +  +   V L W  P    G    +  +TV +  
Sbjct: 4   GSSGKPAIPSSSV---LPSAPRDVVPVLVSSRFVRLSWRPPAEAKG---NIQTFTVFFSR 57

Query: 453 SDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
                   +   +  S  +TV +LKP+  Y F V A N  G G  S    + 
Sbjct: 58  EGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVA 109

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 95.3 bits (237), Expect = 2e-22
 Identities = 36/216 (16%), Positives = 62/216 (28%), Gaps = 48/216 (22%)

Query: 410 PGPPAAP--VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY---FSSDLQTGWVVAAH 464
              P++P    +     +  + + EPE  GG   P++ Y  E+         + W  A  
Sbjct: 6   ADTPSSPSIDQVEPYSSTAQVQFDEPEATGG--VPILKYKAEWRAVGEEVWHSKWYDAKE 63

Query: 465 RITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARAR 524
                 +T+  LKP+T+Y   + A N  GLG  S  S            P+         
Sbjct: 64  ASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLE------- 116

Query: 525 LGTKVVNLRELIPTASTAVRITWEV--SWGSVPQHLLDEARARLGTKVVNLRELIPTAST 582
                      +     ++++        GS  +H L   RA                  
Sbjct: 117 ---------GQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSS--------------- 152

Query: 583 AVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
                W+            +    +  L    +YE 
Sbjct: 153 ----EWKPEIRLPS----GSDHVMLKSLDWNAEYEV 180

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 84.5 bits (209), Expect = 8e-19
 Identities = 24/131 (18%), Positives = 38/131 (29%), Gaps = 17/131 (12%)

Query: 375 TASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPE 434
            A +  G    SA+     +  P            P  P     +     S+ +   + +
Sbjct: 86  AALNGKGLGEISAASEF--KTQPVRE---------PSAPKLEGQMGEDGNSIKVNLIKQD 134

Query: 435 PRGGGVAPVIGYTVEYFSSDLQTGWVVAAHR-ITSTSITVSDLKPDTSYMFIVRAENSHG 493
             G    P+  Y V Y    L + W         S  + +  L  +  Y   V AEN  G
Sbjct: 135 DGGS---PIRHYLVRY--RALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQG 189

Query: 494 LGIPSPVSPIT 504
               +     T
Sbjct: 190 KSKAAHFVFRT 200

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 91.4 bits (227), Expect = 2e-22
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
              + E    +V  G+ V F+C      P  T++W R        RA +  +  L I NV
Sbjct: 11  MVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA-MDFNGILTIRNV 69

Query: 131 GPQDEGLYICDVENLVGSISLRASLTVH 158
            P D G Y+C   N+       A+L V 
Sbjct: 70  QPSDAGTYVCTGSNMFAMDQGTATLHVQ 97

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 62.9 bits (153), Expect = 2e-12
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 259 RLSCFAE-GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 317
              C A+  SP  ++ WT+  +  L  P        +   G L I+ VQ  DAG +VC+ 
Sbjct: 29  TFICTAKSKSPAYTLVWTRLHNGKL--PSR-----AMDFNGILTIRNVQPSDAGTYVCTG 81

Query: 318 LSVAGSTTVRAFLQVR 333
            ++       A L V+
Sbjct: 82  SNMFAMDQGTATLHVQ 97

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 8/37 (21%), Positives = 10/37 (27%)

Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 203
           E +   V  G      C      P  TL W +     
Sbjct: 16  EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGK 52

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVE 392
           +++ +D+G Y CT S+       +A+L V+
Sbjct: 68  NVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 99.6 bits (247), Expect = 2e-22
 Identities = 49/377 (12%), Positives = 93/377 (24%), Gaps = 71/377 (18%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRV-GGDPLP--TILWRRDDGKMPTGRAKILDDRS-LQI 127
                 P  +    G  +   C+V GG P    T++  R + ++    A          +
Sbjct: 87  ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTV 146

Query: 128 ENVGPQDEGLYICDVENLVGS--------ISLRASLTVHLLRDDFRAEPKDTRVASGETA 179
                     + C  E  +           S    L   +L            +      
Sbjct: 147 LVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQG 206

Query: 180 LLECGPPKGQP--EPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRA-N 236
            + C      P  E  +H     Q ++   +   D S      + V        R     
Sbjct: 207 TVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGND-SFSAKASVSVTAEDEGTQRLTCAV 265

Query: 237 LNPRYIGRKMASLLIWNHPRVN--------------RLSCFAEGSPLPSVFWTQEGSQVL 282
           +        + ++ I++ P  N               + C A      ++          
Sbjct: 266 ILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQP--- 322

Query: 283 MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA-LSVAGSTTVRAFLQVREFCVLPKG 341
                      +     L ++   +++   F CSA L VAG    +   +       P+ 
Sbjct: 323 -----------LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRL 371

Query: 342 TFTLGQPNLATGNSDLRRIACD--------------------------LRETDSGLYTCT 375
                  N     +  +   C                           +     G Y C 
Sbjct: 372 DERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTYLCR 431

Query: 376 ASSESGETSWSASLSVE 392
           A S  GE +   +++V 
Sbjct: 432 ARSTQGEVTREVTVNVL 448

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 97.2 bits (241), Expect = 1e-21
 Identities = 53/393 (13%), Positives = 103/393 (26%), Gaps = 64/393 (16%)

Query: 77  EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEG 136
            PS   +  G  V   C    D    +        +P     +  +     E    Q++ 
Sbjct: 5   SPSKVILPRGGSVLVTCSTSCDQPMLLGIET---PLPKKELLLPGNNRKVYELSNVQEDS 61

Query: 137 LYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP--TL 194
             +C      G  + +  LTV+   +     P  +    G+   L C    G P    T+
Sbjct: 62  QPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTV 121

Query: 195 HWKKNGQFIDLESSKSLDL--------SRRTLG-------WLRVRPLYWNVARPRANLNP 239
              +  + +  E +              R   G        L +RP    +    +    
Sbjct: 122 VLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQ 181

Query: 240 RYIGRKMASLLIWNHPRVNR------LSCFAEGS-PLPSVFWTQEGSQVLMFPGNAYGHL 292
                  A+      PRV        + C  +G  P+             + P   YG+ 
Sbjct: 182 LQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGND 241

Query: 293 HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLAT 352
             + + ++ +   + E      C+ +    S      + +  F   P     L +P ++ 
Sbjct: 242 SFSAKASVSVT-AEDEGTQRLTCAVILGNQSQETLQTVTIYSF---PAPNVILTKPEVSE 297

Query: 353 GNSDLRRIACD---------------------------LRETDSGLYTCTASSESGETSW 385
           G      + C+                             E +   ++C+A+ E      
Sbjct: 298 GTE--VTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLI 355

Query: 386 ----SASLSVEPRPGPHAVHRMPDSGLFPGPPA 414
               +  L V   P         +         
Sbjct: 356 HKNQTRELRVLYGPRLDERDCPGNWTWPENSQQ 388

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 86.5 bits (213), Expect = 4e-18
 Identities = 43/285 (15%), Positives = 76/285 (26%), Gaps = 46/285 (16%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGD---PLPTILWRRDDGKM-PTGRAKILDDRSLQI 127
             P    S   +   +    VC + G        +     D ++ PT         +   
Sbjct: 189 ATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKAS 248

Query: 128 ENVGPQDEGLY--ICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGP 185
            +V  +DEG     C V     S     ++T++              V+ G    ++C  
Sbjct: 249 VSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS-FPAPNVILTKPEVSEGTEVTVKC-- 305

Query: 186 PKGQPEPTLHWKKNGQFIDLESSK-SLDLSRRTLG---------------WLRVRPLYWN 229
            +  P   +             ++  L  +    G                 + +     
Sbjct: 306 -EAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELR 364

Query: 230 VARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAY 289
           V        PR   R       W         C A G+PLP +   ++G+  L       
Sbjct: 365 VLYG-----PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP------ 413

Query: 290 GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
                          V ++  G ++C A S  G  T    + V  
Sbjct: 414 ---------IGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 64.1 bits (155), Expect = 6e-11
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 11/89 (12%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK-MPTGRAKILDDRSLQIEN 129
           +      P + T    S    +C+  G+PLP +   +D    +P G          +   
Sbjct: 370 RLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG----------ESVT 419

Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVH 158
           V    EG Y+C   +  G ++   ++ V 
Sbjct: 420 VTRDLEGTYLCRARSTQGEVTREVTVNVL 448

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 96.0 bits (238), Expect = 5e-22
 Identities = 53/316 (16%), Positives = 100/316 (31%), Gaps = 63/316 (19%)

Query: 70  IKPFPISEPSDATVLSGSVVEFVCRV-GGDPLP---TILWRRDDGKMPTGRAKILDDRSL 125
           +      + +    L+G        V G +PLP   T  W +DD       A      +L
Sbjct: 1   MAFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTA------TL 54

Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTV--HLLRDDFRAEPKDTRVASGETALLEC 183
            + +   ++ G Y   V++     S+ + + +           EP+   V+S     L  
Sbjct: 55  TVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHA 114

Query: 184 G-------PPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL------------------ 218
                    P    E    W K    ID  +++ + +   T                   
Sbjct: 115 TVKFSGGKTPADNYELHYSWSKGEDVID--TTQDITIQEFTADKNGVYTVKVWGESEDSA 172

Query: 219 --GWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSV---- 272
                ++     NV +         +G +  SL   N+     +   + G P  ++    
Sbjct: 173 ASASTKIMLATMNVDQDVVESKTVALGNE-ISL---NYVVSEDIVGDSSGMPNLTIKYNW 228

Query: 273 FWTQEGSQVLMFPGNAYGH----LHVTQEGTLRIQGVQKEDAGFFVCSA----------L 318
           +  +EG       G+  G       +T +G L  +    +D   F C A          +
Sbjct: 229 YLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETV 288

Query: 319 SVAGSTTVRAFLQVRE 334
            VA ST+ +  ++V +
Sbjct: 289 EVAASTSRKCSMEVVK 304

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 51.0 bits (121), Expect = 4e-07
 Identities = 31/230 (13%), Positives = 61/230 (26%), Gaps = 62/230 (26%)

Query: 259 RLSCFAEGS-PLPSVF---WTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFV 314
            L+    G  PLPS     WT++                     TL +     E+AG + 
Sbjct: 21  TLTATVAGDEPLPSNLTYTWTKDDQPH------------ENNTATLTVADATSENAGSYK 68

Query: 315 CSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNS-DLRRIAC----------- 362
            +       T+V + + + E   L           +++    +L                
Sbjct: 69  VTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNY 128

Query: 363 ----------------------DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAV 400
                                 +     +G+YT     ES +++ SAS  +         
Sbjct: 129 ELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLAT----- 183

Query: 401 HRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY 450
                  +                 ++L +   E   G  + +   T++Y
Sbjct: 184 -------MNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKY 226

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 44.0 bits (103), Expect = 9e-05
 Identities = 28/194 (14%), Positives = 58/194 (29%), Gaps = 28/194 (14%)

Query: 363 DLRETDSGLYTCTASSESGE-TSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNT 421
           D    ++G Y  T        +  S    +E       +            P    + + 
Sbjct: 58  DATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNI----------TEPQHFYVSSQ 107

Query: 422 TRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTS 481
           T   V L        G   A        +   +            T+  IT+ +   D +
Sbjct: 108 T--DVELHATVKFSGGKTPADNYELHYSWSKGEDVID--------TTQDITIQEFTADKN 157

Query: 482 YMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV----VNLRELIP 537
            ++ V+          S  S  T+ +     V Q +++     LG ++    V   +++ 
Sbjct: 158 GVYTVKVWGESE---DSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVG 214

Query: 538 TASTAVRITWEVSW 551
            +S    +T + +W
Sbjct: 215 DSSGMPNLTIKYNW 228

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score = 90.5 bits (225), Expect = 6e-22
 Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 16/127 (12%)

Query: 380 SGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGG 439
           SG +  SA L V   P              P  P A  +    R ++ L W +P      
Sbjct: 3   SGSSGRSAHLRVRQLPHA------------PEHPVA-TLSTVERRAINLTWTKPFDGN-- 47

Query: 440 VAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSP 499
            +P+I Y +E   ++     ++A+    +TS+TV  L P  SY F + A N  G G  S 
Sbjct: 48  -SPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSK 106

Query: 500 VSPITRT 506
            +     
Sbjct: 107 DTERVSL 113

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score = 93.2 bits (232), Expect = 7e-22
 Identities = 40/215 (18%), Positives = 66/215 (30%), Gaps = 47/215 (21%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT-S 468
           P  P    I         + W   E +G   +P++ YT+++ +S     W  A  ++  +
Sbjct: 6   PNAPKLTGITCQAD-KAEIHW---EQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNT 61

Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLN-SLVPQHLLDEARARLGT 527
            S  V  + P  +Y F V A N  G   PS  S    T        P ++          
Sbjct: 62  DSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNV---------- 111

Query: 528 KVVNLRELIPTASTAVRITWE----VSWGSVPQHLLDEARARLGTKVVNLRELIPTASTA 583
                     T    + I+W     +   +   H             V+ +  IP A+  
Sbjct: 112 ------VGQGTEPNNLVISWTPMPEIEHNAPNFHY-----------YVSWKRDIPAAA-- 152

Query: 584 VRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
               WE  N+          +  +     F KY  
Sbjct: 153 ----WENNNIFD----WRQNNIVIADQPTFVKYLI 179

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score = 78.6 bits (194), Expect = 6e-17
 Identities = 16/99 (16%), Positives = 27/99 (27%), Gaps = 2/99 (2%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHR-ITS 468
              P   V   T   ++ + W          AP   Y V +        W          
Sbjct: 105 FKNPDNVVGQGTEPNNLVISWTPMPEIEHN-APNFHYYVSWKRDIPAAAWENNNIFDWRQ 163

Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTL 507
            +I ++D      Y+  V A N  G    +    +  + 
Sbjct: 164 NNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSG 202

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score = 89.8 bits (223), Expect = 1e-21
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 7/101 (6%)

Query: 411 GPPAAPVILNTTRG--SVTLGWGEPEPRGGGVAPVIGYTVEY---FSSDLQTGWVVAAHR 465
             P++P I        +  + + EPE  GG   P++ Y  E+         + W  A   
Sbjct: 6   SGPSSPSIDQVEPYSSTAQVQFDEPEATGG--VPILKYKAEWRAVGEEVWHSKWYDAKEA 63

Query: 466 ITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
                +T+  LKP+T+Y   + A N  GLG  S  S     
Sbjct: 64  SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 104

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 89.4 bits (222), Expect = 1e-21
 Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT--GRAKILDDRSLQIENVGP 132
              P + TV         C   G P+PTILWR+D   + T   R K L++  LQI     
Sbjct: 12  RQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKL 71

Query: 133 QDEGLYICDVENLVGSISLRASLTVH 158
            D G Y C      G  +  A + V 
Sbjct: 72  GDTGRYTCIASTPSGEATWSAYIEVQ 97

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 73.6 bits (181), Expect = 4e-16
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            LSC A GSP+P++ W ++G  V          +   + G L+I+  +  D G + C A 
Sbjct: 27  VLSCVATGSPVPTILWRKDGVLVSTQDS----RIKQLENGVLQIRYAKLGDTGRYTCIAS 82

Query: 319 SVAGSTTVRAFLQVREF 335
           + +G  T  A+++V+EF
Sbjct: 83  TPSGEATWSAYIEVQEF 99

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 62.5 bits (152), Expect = 4e-12
 Identities = 20/51 (39%), Positives = 26/51 (50%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPP 413
             +  D+G YTC AS+ SGE +WSA + V+    P    R  D  L P  P
Sbjct: 68  YAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPSAP 118

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS 208
            R  P +  VA   T +L C    G P PT+ W+K+G  +  + S
Sbjct: 11  IRQGPVNQTVAVDGTFVLSC-VATGSPVPTILWRKDGVLVSTQDS 54

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 89.4 bits (222), Expect = 1e-21
 Identities = 20/96 (20%), Positives = 28/96 (29%), Gaps = 4/96 (4%)

Query: 410 PGPPAAPVIL-NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
           PG P  P +       S  + W  P+  GG  A +  Y VE         W +      +
Sbjct: 18  PGIPVKPSVKGKIHSHSFKITWDPPKDNGG--ATINKYVVEMAEGSNGNKWEMIY-SGAT 74

Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
                  L P   Y   V   +  G    S    + 
Sbjct: 75  REHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQ 110

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 88.6 bits (220), Expect = 2e-21
 Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 5/94 (5%)

Query: 70  IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDR----S 124
            +P  +  P D TV  G +    C+V G P P + W+ D   + P    K+L       S
Sbjct: 8   FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHS 67

Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
           L IE V  +D G+Y C   N  G  S    L V 
Sbjct: 68  LIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVA 101

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG--TLRIQGVQKEDAGFFVCS 316
           R+ C   G P P + W  +G  V   P +A+  + V + G  +L I+ V   DAG + C 
Sbjct: 28  RMDCKVSGLPTPDLSWQLDGKPV--RPDSAH-KMLVRENGVHSLIIEPVTSRDAGIYTCI 84

Query: 317 ALSVAGSTTVRAFLQVREFCVLP 339
           A + AG  +    L V      P
Sbjct: 85  ATNRAGQNSFSLELVVAAKESGP 107

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 6/45 (13%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSG 407
            +   D+G+YTC A++ +G+ S+S  L V  +         P SG
Sbjct: 72  PVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG------PSSG 110

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 201
           F   P D  V  G+   ++C    G P P L W+ +G+
Sbjct: 12  FLQAPGDLTVQEGKLCRMDC-KVSGLPTPDLSWQLDGK 48

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score = 89.0 bits (221), Expect = 2e-21
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 4/98 (4%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P PP    + +    SV L W  P       +P+  + +EY  +  + G       ++ T
Sbjct: 17  PNPPFDLELTDQLDKSVQLSW-TPGDDNN--SPITKFIIEYEDAMHKPGLWHHQTEVSGT 73

Query: 470 -SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
            +    +L P  +Y F V A NS G  +PS  S    T
Sbjct: 74  QTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLT 111

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115

 Score = 88.4 bits (219), Expect = 3e-21
 Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 15/109 (13%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI--- 466
             PP  P +   +  SV L W  P   G    P++ + V+Y     +  W      I   
Sbjct: 3   TYPPTPPNVTRLSDESVMLRWMVPRNDG---LPIVIFKVQYRMVGKRKNWQTTNDNIPYG 59

Query: 467 ---------TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
                     S + +V+DLKP  +Y F + A  S+     S  S     
Sbjct: 60  KPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL 108

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 91.5 bits (227), Expect = 3e-21
 Identities = 23/159 (14%), Positives = 43/159 (27%), Gaps = 35/159 (22%)

Query: 80  DATVLSGSVVEFVCRV----------GGDPLPTILWRRDDGKM-PTGRAKILDD---RSL 125
            +  LS + ++                      + W  +   +  + R K         L
Sbjct: 2   SSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWL 61

Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDD--------------------FR 165
           QI    P D+G Y+ ++ +          L+     +                       
Sbjct: 62  QINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLG 121

Query: 166 AEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID 204
             P    +  G+   L C    G P P + W KN + + 
Sbjct: 122 GLPDVVTIQEGKALNLTC-NVWGDPPPEVSWLKNEKALA 159

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 87.6 bits (217), Expect = 7e-20
 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 5/125 (4%)

Query: 39  SRRSRSIFGSVLGARGALSDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGD 98
            +++  + G       A      +    E          P   T+  G  +   C V GD
Sbjct: 85  HQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGD 144

Query: 99  PLPTILWRRDDGKM-PTGRAKILDDR----SLQIENVGPQDEGLYICDVENLVGSISLRA 153
           P P + W +++  +  T    +  +        I  V   D G Y   V+N  GS +   
Sbjct: 145 PPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDF 204

Query: 154 SLTVH 158
           +++V 
Sbjct: 205 TVSVF 209

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 69.9 bits (171), Expect = 8e-14
 Identities = 31/199 (15%), Positives = 51/199 (25%), Gaps = 39/199 (19%)

Query: 173 VASGETALLECGPPKGQPEPTLHWKKNGQFIDL--------------------------- 205
            ++ E   L         +  ++W  NG  I                             
Sbjct: 14  QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGK 73

Query: 206 ----------ESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHP 255
                        K++DLS +              A        R +G     + I    
Sbjct: 74  YVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGK 133

Query: 256 RVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 315
            +  L+C   G P P V W +   + L    +        +     I GV   D+G +  
Sbjct: 134 AL-NLTCNVWGDPPPEVSWLKNE-KALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGL 191

Query: 316 SALSVAGSTTVRAFLQVRE 334
              +  GS T    + V  
Sbjct: 192 VVKNKYGSETSDFTVSVFI 210

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 60.3 bits (146), Expect = 1e-10
 Identities = 23/191 (12%), Positives = 44/191 (23%), Gaps = 59/191 (30%)

Query: 259 RLSCF-AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 317
           +L  F         V W+  GS +     +        ++  L+I      D G +V   
Sbjct: 21  QLYSFVTYYVEDLKVNWSHNGSAI--RYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 78

Query: 318 LSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNL--------------------------- 350
                       L  + +         L Q  +                           
Sbjct: 79  FDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLT 138

Query: 351 --ATGN----------------SDLRRIACD-----------LRETDSGLYTCTASSESG 381
               G+                +D   +  +           +   DSG Y     ++ G
Sbjct: 139 CNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYG 198

Query: 382 ETSWSASLSVE 392
             +   ++SV 
Sbjct: 199 SETSDFTVSVF 209

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 13/84 (15%), Positives = 22/84 (26%), Gaps = 10/84 (11%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTT 422
           +    D G Y             +  LS +     +A  +            A V+    
Sbjct: 65  EPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLP 124

Query: 423 R-------GSVTLG---WGEPEPR 436
                    ++ L    WG+P P 
Sbjct: 125 DVVTIQEGKALNLTCNVWGDPPPE 148

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127

 Score = 88.0 bits (218), Expect = 5e-21
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 15/108 (13%)

Query: 410 PGPPAA-PVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWV-------- 460
           P PP+    +   +  ++T+ W            +  Y ++Y     Q  ++        
Sbjct: 16  PNPPSIREELCTASHDTITVHW---ISDDEF--SISSYELQYTIFTGQANFISLYNSVDS 70

Query: 461 -VAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTL 507
            +    I     TV  L+  T Y+FIV+A N  G     P    T + 
Sbjct: 71  WMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQ 118

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 87.1 bits (216), Expect = 6e-21
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 74  PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKIL----DDRSLQIE 128
              E     V + + V+F C  GG+P+PT+ W ++  +     R           SL +E
Sbjct: 11  EKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME 70

Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTV 157
           +V P D+G Y C VEN  GSI+    L V
Sbjct: 71  SVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 56.7 bits (137), Expect = 3e-10
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSA 317
           +  C A G+P+P++ W + G +      +  G   V  +  +L ++ V   D G + C  
Sbjct: 27  KFRCPAGGNPMPTMRWLKNGKE--FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 84

Query: 318 LSVAGSTTVRAFLQV 332
            +  GS      L V
Sbjct: 85  ENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 165 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVR 224
           + E +   V +  T    C P  G P PT+ W KNG+    E        R     L + 
Sbjct: 12  KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME 70

Query: 225 PL 226
            +
Sbjct: 71  SV 72

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSV 391
            +  +D G YTC   +E G  + +  L V
Sbjct: 71  SVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 87.0 bits (216), Expect = 7e-21
 Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 6/97 (6%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P     P +   +     + W  P   G     V  Y +E+   +   G +   +     
Sbjct: 8   PDQCKPPQVTCRSATCAQVNWEVPLSNG---TDVTEYRLEWGGVE---GSMQICYCGPGL 61

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
           S  +  L P T+Y   V+A +  G G  S V      
Sbjct: 62  SYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTP 98

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 86.7 bits (215), Expect = 8e-21
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 1/86 (1%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVG 131
                E     V  G +++  CR+  D   +I W RD  ++       +    +++++  
Sbjct: 4   GSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSV 62

Query: 132 PQDEGLYICDVENLVGSISLRASLTV 157
           P D GLY C   +  GS +   S+ V
Sbjct: 63  PADSGLYACVTSSPSGSDTTYFSVNV 88

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 58.2 bits (141), Expect = 9e-11
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 7/76 (9%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           +L C        S+ W ++G Q+            +T    + +Q     D+G + C   
Sbjct: 22  QLRCRLRDDV-QSINWLRDGVQLA-----ESNRTRITG-EEVEVQDSVPADSGLYACVTS 74

Query: 319 SVAGSTTVRAFLQVRE 334
           S +GS T    + V +
Sbjct: 75  SPSGSDTTYFSVNVSD 90

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 5/45 (11%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSG 407
           D    DSGLY C  SS SG  +   S++V            P SG
Sbjct: 60  DSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSG-----PSSG 99

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 4/55 (7%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
              E +   V  G+   L C   +     +++W ++G    L  S    ++   +
Sbjct: 6   SGVEVESFLVHPGDLLQLRC-RLRDDV-QSINWLRDGV--QLAESNRTRITGEEV 56

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 95.1 bits (235), Expect = 1e-20
 Identities = 43/323 (13%), Positives = 84/323 (26%), Gaps = 54/323 (16%)

Query: 86  GSVVEFVCRVGGDPLPTILWRRDDGKMPT--GRAKILDDR-----SLQIENVGPQDEGLY 138
            +V +F+CR        ++      + P   GR  +         S+ I  +  +D G Y
Sbjct: 246 ANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRY 305

Query: 139 ICDVENLVGSISLRASLTVHLL---RDDFRAEPKDTRVASGETALLECGPPKGQPEPTLH 195
           +C   +              L           P   +  +G +  + C P   +   ++ 
Sbjct: 306 LCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLC-PYNRKESKSIK 364

Query: 196 W------KKNGQFIDLESSKSLDLSRR---------------TLGWLRVRP----LYWNV 230
           +       +NG+   L  S+    ++                T+   ++       YW +
Sbjct: 365 YWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCL 424

Query: 231 ARPRANLNPRY-IGRKMASLLIWNHPRVN-----------RLSCFAEGSPLPSVFWTQEG 278
                       I        +     V               C           W   G
Sbjct: 425 TNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTG 484

Query: 279 SQVLMFPGNAYGHLHVTQE-----GTLRIQGVQKEDAGFFVCSALS-VAGSTTVRAFLQV 332
            Q L           V  +      +L +  V + D G++ C          T   ++ V
Sbjct: 485 CQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAV 544

Query: 333 REFCVLPKGTFTLGQPNLATGNS 355
            E         +L + + A    
Sbjct: 545 EERKAAGSRDVSLAKADAAPDEK 567

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 91.6 bits (226), Expect = 1e-19
 Identities = 65/493 (13%), Positives = 114/493 (23%), Gaps = 118/493 (23%)

Query: 57  SDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPT-ILWRRDDGKMP-- 113
           S      ++ E    P  +++    TV  G  V   C    +         +  G  P  
Sbjct: 98  SRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVL 157

Query: 114 ------------TGRAKILDDRS------LQIENVGPQDEGLYICDVENLVGSISLRASL 155
                       TGR ++    +      + I  +   D G Y+C   +   S    A L
Sbjct: 158 VIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADL 217

Query: 156 TVHLLRDDFRAEPKDTRV--------ASGETALLECGPPKGQPEPTLHWKKNGQFIDLES 207
            V     +   E     V             A   C          +     G+      
Sbjct: 218 QVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLC-RQSSGENCDVVVNTLGKRAPAFE 276

Query: 208 SK-----SLDLSRRTLGWLRVRP----LYW----NVARPRANLNPRYIGRKMASLLIWNH 254
            +            ++    +R      Y     +  + +     +     +        
Sbjct: 277 GRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPR 336

Query: 255 PRVN---------RLSCFAEGSPLPSVFW--TQEGSQVLMFPGNAY--GHLHVTQEG--- 298
                         + C        S+ +    EG+Q    P      G +    EG   
Sbjct: 337 SPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLS 396

Query: 299 ----------TLRIQGVQKEDAGFFVCSA--------------------LSVAGSTTVRA 328
                     T+ +  +   DAGF+ C                      L V G+ T   
Sbjct: 397 LLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVL 456

Query: 329 FLQVREFCVLP-----------KGTFTLGQPNLATGNSDLRRIACD-------------L 364
              ++  C  P           K   T  Q   +      +                  +
Sbjct: 457 GETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLV 516

Query: 365 RETDSGLYTCTASSES-GETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTR 423
              D G Y C          + +  ++VE R    +             P   V+ +  R
Sbjct: 517 TRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKA--DAAPDEKVLDSGFR 574

Query: 424 GSVTLGWGEPEPR 436
                     +PR
Sbjct: 575 --EIENKAIQDPR 585

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 87.7 bits (216), Expect = 3e-18
 Identities = 52/327 (15%), Positives = 90/327 (27%), Gaps = 65/327 (19%)

Query: 74  PISEPSDATVLSGSVVEFVCRV---GGDPLPTILWRRDDGK---------------MPTG 115
           PI  P +   + G+ V   C       +      W R   +                  G
Sbjct: 3   PIFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAG 62

Query: 116 RAKILDDR-----SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKD 170
           RA + +        + I  +   D G Y C +      +S   SL V         + K 
Sbjct: 63  RANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVS-QGPGLLNDTKV 121

Query: 171 TRVASGETALLECG-PPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPL--- 226
             V  G T  + C    +   +    +K+ G +  L    S  ++    G +R+      
Sbjct: 122 YTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTG 181

Query: 227 ------------------YWNVAR-----PRANLNPRYIGRKM--------ASLLIWNHP 255
                             Y   A       + N + + +  +          S+      
Sbjct: 182 QLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCAL 241

Query: 256 R-----VNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG-TLRIQGVQKED 309
                 V +  C         V     G +   F G    +        ++ I G++KED
Sbjct: 242 GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKED 301

Query: 310 AGFFVCSALSVAGSTTVRAFLQVREFC 336
           AG ++C A S             + F 
Sbjct: 302 AGRYLCGAHSDGQLQEGSPIQAWQLFV 328

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 43.8 bits (102), Expect = 1e-04
 Identities = 50/349 (14%), Positives = 87/349 (24%), Gaps = 52/349 (14%)

Query: 168 PKDTRVASGETALLEC--GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP 225
           P++     G +  + C   P         +W + G      +  S +    +    R   
Sbjct: 7   PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRA-- 64

Query: 226 LYWNVARPRANLNPRYIGRKMASLLIWNHPRVN---RLSCFAEGSPLPSVFWTQEGSQVL 282
              N+     N            ++       +   R  C    +     F         
Sbjct: 65  ---NLTNFPENGT---------FVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQG 112

Query: 283 MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGT 342
               N      V    T+ I            C   +         + Q+  + VL   +
Sbjct: 113 PGLLNDTKVYTVDLGRTVTIN-----------CPFKTENAQKRKSLYKQIGLYPVLVIDS 161

Query: 343 FTLGQPNLA---------TGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEP 393
                PN           TG      +   LR +D+G Y C A  +S     +A L V  
Sbjct: 162 SGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLK 221

Query: 394 RPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEP---RGGGVAPVIGYTVEY 450
                    +  S  F       V                +      G  AP     +  
Sbjct: 222 PEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILL 281

Query: 451 FSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSP 499
              D             S S+ ++ L+ + +  ++  A +   L   SP
Sbjct: 282 NPQDKD----------GSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSP 320

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 85.9 bits (213), Expect = 1e-20
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 68  ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQI 127
            L +   + EP    V  G  V   C V   P P I W +D   +P     +     L +
Sbjct: 7   GLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLP-----LPPSPVLIL 61

Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTVHLL 160
             +GPQD+G Y C   +         ++++ ++
Sbjct: 62  PEIGPQDQGTYSCVATHSSHGPQESRAVSISII 94

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 60.5 bits (147), Expect = 1e-11
 Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 11/74 (14%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            L+C     P P + W ++G             L +     L +  +  +D G + C A 
Sbjct: 29  TLTCEVPAQPSPQIHWMKDGVP-----------LPLPPSPVLILPEIGPQDQGTYSCVAT 77

Query: 319 SVAGSTTVRAFLQV 332
             +        + +
Sbjct: 78  HSSHGPQESRAVSI 91

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 58.2 bits (141), Expect = 7e-11
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR 215
              EP+   VA G T  L C  P  QP P +HW K+G  + L  S  L L  
Sbjct: 13  LVVEPEGGAVAPGGTVTLTCEVP-AQPSPQIHWMKDGVPLPLPPSPVLILPE 63

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 346 GQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSV 391
           G P     +  L  +  ++   D G Y+C A+  S     S ++S+
Sbjct: 48  GVPLPLPPSPVLI-LP-EIGPQDQGTYSCVATHSSHGPQESRAVSI 91

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 89.2 bits (221), Expect = 2e-20
 Identities = 26/173 (15%), Positives = 54/173 (31%), Gaps = 25/173 (14%)

Query: 70  IKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKM-PTGRAKILDDR---- 123
           I PF         +L    V F  +         + +  ++ ++    + K+  DR    
Sbjct: 2   IDPF-TKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60

Query: 124 -SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRA---------------- 166
             + +E +  +DEG Y   +++   +      L   + +   +                 
Sbjct: 61  IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 120

Query: 167 -EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
            E     V      LL+C     + E  + W K+ + I ++          TL
Sbjct: 121 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTL 173

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 73.4 bits (180), Expect = 4e-15
 Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 3/86 (3%)

Query: 75  ISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDD--RSLQIENVG 131
             E     V     V   C+V        I+W +D+ ++         D   +L I    
Sbjct: 120 FVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFS 179

Query: 132 PQDEGLYICDVENLVGSISLRASLTV 157
            +D G+Y   +++  G    R  L  
Sbjct: 180 KKDAGIYEVILKDDRGKDKSRLKLVD 205

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 63.8 bits (155), Expect = 8e-12
 Identities = 25/191 (13%), Positives = 45/191 (23%), Gaps = 57/191 (29%)

Query: 256 RVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG--TLRIQGVQKEDAGFF 313
           +V       + S    V +     ++  F G  Y        G   + ++ +Q ED G +
Sbjct: 19  QVRFWMQAEKLSGNAKVNYIFNEKEI--FEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTY 76

Query: 314 VCSALSVAGSTTVRAFLQVREFCVLPKGT--------------FTLGQPNLATGNSDLRR 359
                    +      L    F  L K                F        TG  ++  
Sbjct: 77  TFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNV-L 135

Query: 360 IAC--------------------------------------DLRETDSGLYTCTASSESG 381
           + C                                      +  + D+G+Y      + G
Sbjct: 136 LKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG 195

Query: 382 ETSWSASLSVE 392
           +      L  E
Sbjct: 196 KDKSRLKLVDE 206

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 59.6 bits (144), Expect = 2e-10
 Identities = 23/207 (11%), Positives = 50/207 (24%), Gaps = 44/207 (21%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR-------- 215
           F        +             K      +++  N + I       + + R        
Sbjct: 5   FTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMF 64

Query: 216 ----------------------RTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWN 253
                                      + V  ++  + +        +I ++    + + 
Sbjct: 65  MEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL 124

Query: 254 HPRVN-----RLSCFAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG--TLRIQGV 305
              V       L C          + W ++  ++ +         H  ++G  TL I   
Sbjct: 125 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV------DEKHDFKDGICTLLITEF 178

Query: 306 QKEDAGFFVCSALSVAGSTTVRAFLQV 332
            K+DAG +        G    R  L  
Sbjct: 179 SKKDAGIYEVILKDDRGKDKSRLKLVD 205

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 87.0 bits (215), Expect = 2e-20
 Identities = 20/115 (17%), Positives = 34/115 (29%), Gaps = 17/115 (14%)

Query: 64  IAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR 123
           +          +  P       G  VE  C   G P+P I W  +        +++ D  
Sbjct: 14  LVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGA 73

Query: 124 -----------------SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLR 161
                            ++ I+ +  +D G Y C   N      L  +  V  +R
Sbjct: 74  RLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVR 128

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 63.5 bits (154), Expect = 3e-12
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 11/86 (12%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPG-----------NAYGHLHVTQEGTLRIQGVQK 307
            L C A GSP+P + W  EG                   + +   H     T+ I  + +
Sbjct: 40  ELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVE 99

Query: 308 EDAGFFVCSALSVAGSTTVRAFLQVR 333
           ED G + C A +      +    +V+
Sbjct: 100 EDTGTYECRASNDPDRNHLTRAPRVK 125

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 88.1 bits (218), Expect = 2e-20
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 65  AKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRS 124
            +E  +  F ++  SD  +L G  +           P++  R   GK       I   ++
Sbjct: 91  KEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGK------NIQGGKT 144

Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
           L +  +  QD G + C V      +  +  + V 
Sbjct: 145 LSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 178

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 80.8 bits (199), Expect = 7e-18
 Identities = 27/151 (17%), Positives = 46/151 (30%), Gaps = 32/151 (21%)

Query: 86  GSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL---------------------DDRS 124
           G  VE  C           W+  +     G                           +  
Sbjct: 10  GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69

Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECG 184
           L I+N+  +D   YIC+VE+            V LL     A   DT +  G++  L   
Sbjct: 70  LIIKNLKIEDSDTYICEVED--------QKEEVQLLVFGLTANS-DTHLLQGQSLTLTL- 119

Query: 185 PPKGQPEPTLHWKKNGQFIDLESSKSLDLSR 215
                  P++  +       ++  K+L +S+
Sbjct: 120 ESPPGSSPSVQCRSPRGKN-IQGGKTLSVSQ 149

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 70.8 bits (173), Expect = 2e-14
 Identities = 24/184 (13%), Positives = 49/184 (26%), Gaps = 37/184 (20%)

Query: 176 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRA 235
           G+T  L C     +     HWK + Q   L +  S      +    R         +   
Sbjct: 10  GDTVELTCTAS-QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNF 68

Query: 236 NL-----------------NPRYIGRKMASLLIWNHPRVN-------RLSCFAEGSPLPS 271
            L                   +    ++    +  +   +        L+  +     PS
Sbjct: 69  PLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPS 128

Query: 272 VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 331
           V       +             +    TL +  ++ +D+G + C+ L        +  + 
Sbjct: 129 VQCRSPRGKN------------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIV 176

Query: 332 VREF 335
           V  F
Sbjct: 177 VLAF 180

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 70.4 bits (172), Expect = 4e-14
 Identities = 24/169 (14%), Positives = 41/169 (24%), Gaps = 43/169 (25%)

Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGH---------------LHVTQEGTLRIQG 304
           L+C A         W       ++    ++                 L       L I+ 
Sbjct: 15  LTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKN 74

Query: 305 VQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQ----------------- 347
           ++ ED+  ++C              L V             GQ                 
Sbjct: 75  LKIEDSDTYICEVEDQKEEVQ----LLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQ 130

Query: 348 -----PNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSV 391
                     G   L  ++  L   DSG +TCT      +  +   + V
Sbjct: 131 CRSPRGKNIQGGKTLS-VS-QLELQDSGTWTCTVLQNQKKVEFKIDIVV 177

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score = 94.1 bits (233), Expect = 2e-20
 Identities = 54/265 (20%), Positives = 84/265 (31%), Gaps = 65/265 (24%)

Query: 372 YTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAP--VILNTTRGSVTLG 429
             C    E    S   + S E   G     + P S     PP+AP  +        V L 
Sbjct: 293 SPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELR 352

Query: 430 WGEPEPRGGGVAPVIGYTVEYFSSDLQTG----------WVVAAHRITSTSITVSDLKPD 479
           W  P+  GG     I Y+V       ++G          +    H +T TS+TVSDL+P 
Sbjct: 353 WTPPQDSGGR--EDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPH 410

Query: 480 TSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTA 539
            +Y F V A N     + S     T ++ +N   P  +                 L   +
Sbjct: 411 MNYTFTVEARNGVSGLVTSRSF-RTASVSINQTEPPKV----------------RLEGRS 453

Query: 540 STAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAV----RITWEKYNMAT 595
           +T++ ++W +                            P    +      +T+ K   + 
Sbjct: 454 TTSLSVSWSI----------------------------PPPQQSRVWKYEVTYRKKGDSN 485

Query: 596 VMNAATT--TSYTVTHLRKFTKYEF 618
             N   T   S T+  L   T Y  
Sbjct: 486 SYNVRRTEGFSVTLDDLAPDTTYLV 510

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score = 82.1 bits (202), Expect = 2e-16
 Identities = 28/127 (22%), Positives = 40/127 (31%), Gaps = 18/127 (14%)

Query: 381 GETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGV 440
                S S                        P    +   +  S+++ W  P P+    
Sbjct: 424 SGLVTSRSFRTASVSIN------------QTEPPKVRLEGRSTTSLSVSWSIPPPQQS-- 469

Query: 441 APVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPV 500
             V  Y V Y              R    S+T+ DL PDT+Y+  V+A    G G  S V
Sbjct: 470 -RVWKYEVTYR--KKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKV 526

Query: 501 SPITRTL 507
               +TL
Sbjct: 527 HEF-QTL 532

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 85.5 bits (212), Expect = 2e-20
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           PG P   +I  T   +  L W  P+   G    ++GY ++Y  +D +             
Sbjct: 8   PGRPT-MMISTTAMNTALLQWHPPKELPG---ELLGYRLQYCRAD-EARPNTIDFGKDDQ 62

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
             TV+ L   T+Y+F + A+N  GLG        T
Sbjct: 63  HFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRT 97

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 84.7 bits (210), Expect = 4e-20
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 5/88 (5%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKIL----DDRSLQIEN 129
           I  P + ++  G       +V G P P + W  +   +      K++       SL  E 
Sbjct: 9   IQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEV 68

Query: 130 VGPQDEGLYICDVENLVGSISLRASLTV 157
           V   D G Y C  +N  G  +    L V
Sbjct: 69  VRASDAGAYACVAKNRAGEATFTVQLDV 96

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 62.0 bits (151), Expect = 4e-12
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG--TLRIQGVQKEDAGFFVCS 316
           R+     G P P V W   G  V     +    + V+++G  +L  + V+  DAG + C 
Sbjct: 24  RMDFKVSGLPAPDVSWYLNGRTV---QSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACV 80

Query: 317 ALSVAGSTTVRAFLQVRE 334
           A + AG  T    L V  
Sbjct: 81  AKNRAGEATFTVQLDVLA 98

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 49.6 bits (119), Expect = 7e-08
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPR 394
            +R +D+G Y C A + +GE +++  L V  +
Sbjct: 68  VVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 164 FRAEPKDTRVASGETALLECGPPK--GQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWL 221
           F   P++  +  G    ++    K  G P P + W  NG+ +  +    + +S + L  L
Sbjct: 8   FIQVPENMSIDEGRFCRMDF---KVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64

Query: 222 RVRPL 226
               +
Sbjct: 65  IFEVV 69

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 93.9 bits (232), Expect = 4e-20
 Identities = 44/280 (15%), Positives = 76/280 (27%), Gaps = 53/280 (18%)

Query: 348 PNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSG 407
           P  A+G +     +C++    SG+  C ++   G T        +  P            
Sbjct: 114 PEKASGFAAACVESCEVDNECSGVKKCCSNG-CGHTCQVPKTLYKGVP------------ 160

Query: 408 LFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY-------FSSDLQTGWV 460
               P           G + + W             + Y V+         S D  T W 
Sbjct: 161 --LKPRKELRFTELQSGQLEVKWSSKFNISI---EPVIYVVQRRWNYGIHPSEDDATHWQ 215

Query: 461 VAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDE 520
             A + T   + ++D++P   Y F V A N HG    +  S   R+              
Sbjct: 216 TVA-QTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRS--------SKDPSA 266

Query: 521 ARARLGTKVVNLRELIPTASTAVRITWEV--SWGSVPQHLLDEARARLGTKVVNLRELIP 578
             A    ++ N   +    S  V I W++         H             V    ++ 
Sbjct: 267 PPAPANLRLANST-VNSDGSVTVTIVWDLPEEPDIPVHHY-----------KVFWSWMVS 314

Query: 579 TASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
           + S        +             S  +  L+    Y  
Sbjct: 315 SKSLVPTKKKRRKTT-----DGFQNSVILEKLQPDCDYVV 349

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 74.2 bits (181), Expect = 6e-14
 Identities = 50/321 (15%), Positives = 84/321 (26%), Gaps = 33/321 (10%)

Query: 322 GSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESG 381
               V   +Q R    +                +D R    D+R +    +   A +  G
Sbjct: 188 SIEPVIYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHG 247

Query: 382 ETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRG-----SVTLGWGEPEPR 436
              ++A         P    R       P  PA   + N+T       +VT+ W  PE  
Sbjct: 248 TRGFTA---------PSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEP 298

Query: 437 GGGVAPVIGYTVEY------FSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAEN 490
                PV  Y V +       S                 S+ +  L+PD  Y+  ++A  
Sbjct: 299 DI---PVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAIT 355

Query: 491 SHGLG--IPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 548
             G      + VS    +    +   Q      + R G     L       +  + +   
Sbjct: 356 YWGQTRLKSAKVSLHFTSTHATNNKEQ----LVKTRKGGIQTQLPFQRRRPTRPLEVGAP 411

Query: 549 VSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVT 608
                  Q  +   +    T         P A    R T  + +              + 
Sbjct: 412 FYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMT----HENYIILQ 467

Query: 609 HLRKFTKYEFFLVPFFKTVEG 629
            L    KY+  + P       
Sbjct: 468 DLSFSCKYKVTVQPIRPKSHS 488

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 62.3 bits (150), Expect = 3e-10
 Identities = 38/268 (14%), Positives = 70/268 (26%), Gaps = 35/268 (13%)

Query: 374 CTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEP 433
            T   ++   S   SL        +   ++  +    G     +     R +  L  G P
Sbjct: 354 ITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKT--RKGGIQTQLPFQRRRPTRPLEVGAP 411

Query: 434 EPRGGGVAPVI-----------GYTVEYFSSDLQ----TGWVVAAHRITSTSITVSDLKP 478
             + G +   +            Y V +F         TG   ++       I + DL  
Sbjct: 412 FYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSF 471

Query: 479 DTSYMFIVRAENSHGLGIPSPVSPIT------RTLGLNSLVPQHLLDEARARLGTKVVNL 532
              Y   V+            V   T      +      +          +++  K  NL
Sbjct: 472 SCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENL 531

Query: 533 RELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYN 592
                     +      SW          A+A L   +   +      +T  R      +
Sbjct: 532 SASFIVQDVNITGH--FSW--------KMAKANLYQPMTGFQVTWAEVTTESRQNSLPNS 581

Query: 593 MA--TVMNAATTTSYTVTHLRKFTKYEF 618
           +   + +  +     TV +LR  T Y  
Sbjct: 582 IISQSQILPSDHYVLTVPNLRPSTLYRL 609

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 61.9 bits (149), Expect = 4e-10
 Identities = 21/147 (14%), Positives = 43/147 (29%), Gaps = 15/147 (10%)

Query: 367 TDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSV 426
               ++  T    + +      +      G      +      P   +A  I+     + 
Sbjct: 489 KAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAK----PENLSASFIVQDVNITG 544

Query: 427 TLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS---------TSITVSDLK 477
              W   +       P+ G+ V +     ++      + I S           +TV +L+
Sbjct: 545 HFSWKMAKANLYQ--PMTGFQVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLR 602

Query: 478 PDTSYMFIVRAENSHGLGIPSPVSPIT 504
           P T Y   V+     G G  +  +  T
Sbjct: 603 PSTLYRLEVQVLTPGGEGPATIKTFRT 629

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 85.2 bits (211), Expect = 4e-20
 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 4/97 (4%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P  P   V       S+ + W EP        P+ GY+VEY   +      +       T
Sbjct: 18  PDTPTRLVFSALGPTSLRVSWQEPRCER----PLQGYSVEYQLLNGGELHRLNIPNPAQT 73

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
           S+ V DL P+ SY+F VRA++  G G          +
Sbjct: 74  SVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIES 110

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 85.1 bits (211), Expect = 5e-20
 Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 19/127 (14%)

Query: 381 GETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGV 440
           G +  S  +  +P                PGP         +  S+T+ W  P    G  
Sbjct: 1   GSSGSSGRVETQPEVQL------------PGPAPNLRAYAASPTSITVTWETPVSGNG-- 46

Query: 441 APVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPV 500
             +  Y + Y               ++S S T++ LK  T Y F V A N HG G+ +P 
Sbjct: 47  -EIQNYKLYYMEKG---TDKEQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPD 102

Query: 501 SPITRTL 507
             + RTL
Sbjct: 103 VAV-RTL 108

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 87.8 bits (217), Expect = 6e-20
 Identities = 27/173 (15%), Positives = 46/173 (26%), Gaps = 33/173 (19%)

Query: 78  PSDATVLSGSVVEFVCRVGGDPLPT----ILWRRDDGKMPT------------------- 114
                   G      C+    P       I W                            
Sbjct: 7   EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYP 66

Query: 115 ---GRAKILDDR------SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFR 165
              GR     +       S+ + N+   D G Y C V+   G  + +  LTV L++    
Sbjct: 67  DLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTV-LVKPSGT 125

Query: 166 AEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
               D     G    L+C P +G       W+K      + +    +++   +
Sbjct: 126 RCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVI 178

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 82.4 bits (203), Expect = 5e-18
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 69  LIKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDG--KMPTGRAKILDDRSL 125
           L+KP       D +   G+  +  C    G       W++      MPT     +    +
Sbjct: 119 LVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVI 178

Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTV 157
            ++N   +  G Y C V+N VGS      L V
Sbjct: 179 SVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV 210

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 70.5 bits (172), Expect = 6e-14
 Identities = 32/215 (14%), Positives = 55/215 (25%), Gaps = 57/215 (26%)

Query: 168 PKDTRVASGETALLEC---GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVR 224
            +    A GETA L C     P+ Q    + W  +     +     +  S       ++ 
Sbjct: 7   EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGD-----KIY 61

Query: 225 PLYWNVARPRANLNPRYIGRKMASLLIWNH------------------------------ 254
             Y+   + R +     +    AS+ + N                               
Sbjct: 62  DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121

Query: 255 ---PRVN-----------RLSCFA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 299
               R             +L C   EGS      W +      M        L       
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTP----WLAEMTSPV 177

Query: 300 LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
           + ++    E +G + C+  +  GS      L V  
Sbjct: 178 ISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 86.4 bits (214), Expect = 6e-20
 Identities = 30/141 (21%), Positives = 44/141 (31%), Gaps = 11/141 (7%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPTGRAKILDDRSLQIEN 129
           K     EP    VL    V   C+    P   +I W  +   +PT        +      
Sbjct: 4   KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPT------HTQPSYRFK 57

Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQ 189
               D G Y C       S+S    LTV    +    +        GET +L C   K +
Sbjct: 58  ANNNDSGEYTCQTGQ--TSLSDPVHLTVL--FEWLVLQTPHLEFQEGETIMLRCHSWKDK 113

Query: 190 PEPTLHWKKNGQFIDLESSKS 210
           P   + + +NG+         
Sbjct: 114 PLVKVTFFQNGKSQKFSHLDP 134

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 58.7 bits (142), Expect = 3e-10
 Identities = 24/175 (13%), Positives = 49/175 (28%), Gaps = 22/175 (12%)

Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPL 226
           EP    V   ++  L C   +     ++ W  NG  I    ++     +           
Sbjct: 10  EPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLI-PTHTQPSYRFKAN---NNDSGE 65

Query: 227 YWNVARPRANLNPRYIGRKMASLLIWNHPRVNR------LSCFAEGS-PLPSVFWTQEGS 279
           Y       +  +P ++      L++       +      L C +    PL  V + Q G 
Sbjct: 66  YTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGK 125

Query: 280 QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF-LQVR 333
                  +           T  I       +G + C+        + +   + V+
Sbjct: 126 SQKFSHLD----------PTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ 170

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 12/86 (13%), Positives = 22/86 (25%), Gaps = 6/86 (6%)

Query: 74  PISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGP 132
            + +        G  +   C      PL  + + ++             D +  I     
Sbjct: 88  LVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH----LDPTFSIPQANH 143

Query: 133 QDEGLYICDVENLVGSI-SLRASLTV 157
              G Y C          S   ++TV
Sbjct: 144 SHSGDYHCTGNIGYTLFSSKPVTITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 49.8 bits (119), Expect = 3e-07
 Identities = 27/160 (16%), Positives = 45/160 (28%), Gaps = 42/160 (26%)

Query: 260 LSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           L+C    SP   S+ W   G+ +             T             D+G + C   
Sbjct: 24  LTCQGARSPESDSIQWFHNGNLIP------------THTQPSYRFKANNNDSGEYTCQTG 71

Query: 319 SVAGSTTVRAFLQVR---EFCVLPKGTFTLGQP-NL---ATGNSDLRRIA---------- 361
             + S  V   L V         P   F  G+   L   +  +  L ++           
Sbjct: 72  QTSLSDPVH--LTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF 129

Query: 362 ---------CDLRETDSGLYTCTASSESG-ETSWSASLSV 391
                         + SG Y CT +      +S   +++V
Sbjct: 130 SHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 87.1 bits (215), Expect = 7e-20
 Identities = 19/137 (13%), Positives = 36/137 (26%), Gaps = 4/137 (2%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRS-LQIENVGPQ 133
            +  S      G  V   C   G   P   WR        G+       S L +  V   
Sbjct: 5   TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFG 64

Query: 134 DEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP- 192
           +E  Y+C        +     + ++              + +G+   ++C      P   
Sbjct: 65  NEHSYLCTATCESRKLEKGIQVEIY-SFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDR 123

Query: 193 -TLHWKKNGQFIDLESS 208
             +   K    +  +  
Sbjct: 124 LEIDLLKGDHLMKSQEF 140

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 44.4 bits (104), Expect = 3e-05
 Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 9/94 (9%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            L+C   G   P   W  +    L          +     TL +  V   +   ++C+A 
Sbjct: 20  SLTCSTTGCESPFFSWRTQIDSPL-----NGKVTNEGTTSTLTMNPVSFGNEHSYLCTAT 74

Query: 319 SVAGSTTVRAFLQVREFCVLPK----GTFTLGQP 348
             +        +++  F   P+    G    G+P
Sbjct: 75  CESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKP 108

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 87.0 bits (215), Expect = 8e-20
 Identities = 27/163 (16%), Positives = 48/163 (29%), Gaps = 23/163 (14%)

Query: 77  EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--------------------GKMPTGR 116
           E     V   + V  +       L    W + +                    G+  +GR
Sbjct: 5   EAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGR 64

Query: 117 AKILDDRSLQIENVGPQDEGLYICDVENLVG-SISLRASLTVHLLRDDFRAEPKDTRVAS 175
             I  + SL  + +  +D G+Y  D+ +             VH        +  +T V  
Sbjct: 65  EIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKE 124

Query: 176 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
            ++  L C          + W  N Q + L    +L  +   L
Sbjct: 125 LDSVTLTCLS--NDIGANIQWLFNSQSLQLTERMTLSQNNSIL 165

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 70.1 bits (171), Expect = 6e-14
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP-TGRAKIL-DDRSLQIEN 129
             P  + ++ TV     V   C         I W  +   +  T R  +  ++  L+I+ 
Sbjct: 111 TQPFLQVTNTTVKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNNSILRIDP 169

Query: 130 VGPQDEGLYICDVENLVGS-ISLRASLTVH 158
           +  +D G Y C++ N V    S    L + 
Sbjct: 170 IKREDAGEYQCEISNPVSVRRSNSIKLDII 199

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 59.7 bits (144), Expect = 2e-10
 Identities = 36/192 (18%), Positives = 51/192 (26%), Gaps = 52/192 (27%)

Query: 260 LSCFAEGSPLPSVFWTQEGSQVL-------------MFPGNAY-GHLHVTQEGTLRIQGV 305
           L        L +  W +  +  +              F G AY G   +   G+L  Q +
Sbjct: 19  LLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMI 78

Query: 306 QKEDAGFFVCSALSVAGSTTVRAFLQVREFC------------VLPKGTFTL-------- 345
             +D G +           T                       V    + TL        
Sbjct: 79  TMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIG 138

Query: 346 --------GQP-------NLATGNSDLRRIACDLRETDSGLYTCTAS-SESGETSWSASL 389
                    Q         L+  NS L RI   ++  D+G Y C  S   S   S S  L
Sbjct: 139 ANIQWLFNSQSLQLTERMTLSQNNSIL-RID-PIKREDAGEYQCEISNPVSVRRSNSIKL 196

Query: 390 SVEPRPGPHAVH 401
            +   P  H  H
Sbjct: 197 DIIFDPHHHHHH 208

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 49.3 bits (117), Expect = 9e-07
 Identities = 30/201 (14%), Positives = 54/201 (26%), Gaps = 42/201 (20%)

Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID---------------------- 204
           E    +VA     LL              W K                            
Sbjct: 5   EAVPPQVAEDNNVLLLV-HNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSG 63

Query: 205 ---LESSKSLDLSRRTL---GWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVN 258
              + S+ SL     T+   G   +     N  R +A +            L   +  V 
Sbjct: 64  REIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVK 123

Query: 259 -----RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG-TLRIQGVQKEDAGF 312
                 L+C +      ++ W      + +        + ++Q    LRI  +++EDAG 
Sbjct: 124 ELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTE-----RMTLSQNNSILRIDPIKREDAGE 177

Query: 313 FVCSALSVAGSTTVRAF-LQV 332
           + C   +        +  L +
Sbjct: 178 YQCEISNPVSVRRSNSIKLDI 198

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score = 83.3 bits (206), Expect = 2e-19
 Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 5/99 (5%)

Query: 410 PGPPAAPVIL--NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
              P+ P I    ++  S  L       +  G AP++ Y V+Y S D +  W+    +  
Sbjct: 6   MREPSPPSIHGQPSSGKSFKLSI---TKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGN 62

Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
              I +  L+    Y   + A N  G   P+        
Sbjct: 63  KDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPP 101

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 82.5 bits (204), Expect = 2e-19
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 1/86 (1%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVG 131
                E     V  G +++  CR+  D   +I W RD  ++       +    +++ +  
Sbjct: 10  WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSI 68

Query: 132 PQDEGLYICDVENLVGSISLRASLTV 157
           P D GLY C   +  GS +   S+ V
Sbjct: 69  PADSGLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 56.3 bits (136), Expect = 3e-10
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 7/74 (9%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           +L C        S+ W ++G Q++           +T    + ++     D+G + C   
Sbjct: 28  QLRCRLRDDV-QSINWLRDGVQLV-----ESNRTRITG-EEVEVRDSIPADSGLYACVTS 80

Query: 319 SVAGSTTVRAFLQV 332
           S +GS T    + V
Sbjct: 81  SPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSV 391
           D    DSGLY C  SS SG  +   S++V
Sbjct: 66  DSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 4/62 (6%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
              E +   V  G+   L C         +++W ++G    L  S    ++   +     
Sbjct: 12  VPVEVESLLVHPGDLLQLRC--RLRDDVQSINWLRDGV--QLVESNRTRITGEEVEVRDS 67

Query: 224 RP 225
            P
Sbjct: 68  IP 69

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 85.9 bits (212), Expect = 2e-19
 Identities = 33/167 (19%), Positives = 59/167 (35%), Gaps = 17/167 (10%)

Query: 73  FPISEPSDA-TVLSGSVVEFVCRVGGDPLPTILWRR-------DDGKMPTGRAKILDDR- 123
           F ++ P +  TV  GS V   C         +   R       +D  + + RA +L+++ 
Sbjct: 3   FTVTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQL 62

Query: 124 -----SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGET 178
                   I +V  +D G Y C V            LTV +     R + +   V     
Sbjct: 63  PLGKALFHIPSVQVRDSGQYRCLVICGAAWDY--KYLTVKVKASYMRIDTRILEVPGTGE 120

Query: 179 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP 225
             L C   +G P   + W+      +    ++ +   +    LR++P
Sbjct: 121 VQLTC-QARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKP 166

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 82.7 bits (205), Expect = 2e-19
 Identities = 23/89 (25%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDR----SLQIEN 129
                  TV  GS   F  RV G P P   W ++  K+  + R            L I +
Sbjct: 9   FERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRD 68

Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVH 158
           V  +D    +    N+ G  S  A L V 
Sbjct: 69  VTGEDSASIMVKAINIAGETSSHAFLLVQ 97

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 9/80 (11%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG----TLRIQGVQKEDAGFFV 314
                  G P P   W + G ++          ++          L I+ V  ED+   +
Sbjct: 24  HFRVRVVGKPDPECEWYKNGVKI-----ERSDRIYWYWPEDNVCELVIRDVTGEDSASIM 78

Query: 315 CSALSVAGSTTVRAFLQVRE 334
             A+++AG T+  AFL V+ 
Sbjct: 79  VKAINIAGETSSHAFLLVQA 98

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPR 394
           D+   DS      A + +GETS  A L V+ +
Sbjct: 68  DVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID 204
                +   V  G  A        G+P+P   W KNG  I+
Sbjct: 8   IFERIQSQTVGQGSDAHFRV-RVVGKPDPECEWYKNGVKIE 47

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 89.0 bits (220), Expect = 2e-19
 Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 9/136 (6%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP--TGRAKILDDRSLQIEN 129
           P    +  +A+V  G  V   C+V G  L    W   + +      ++  L    L + N
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 218

Query: 130 V-GPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKG 188
           V    +     C  EN VG   +   + V      F A  +           +      G
Sbjct: 219 VTSDLNRKNVTCWAENDVGRAEVSVQVNVS-----FPASVQLHTAVEMHHWCIPF-SVDG 272

Query: 189 QPEPTLHWKKNGQFID 204
           QP P+L W  NG  ++
Sbjct: 273 QPAPSLRWLFNGSVLN 288

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 85.2 bits (210), Expect = 4e-18
 Identities = 28/189 (14%), Positives = 48/189 (25%), Gaps = 20/189 (10%)

Query: 163 DFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLR 222
             + +  +  V  G+  LL C   +G+      W            KS  L    L    
Sbjct: 160 TLKVQVPNASVDVGDDVLLRC-QVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 218

Query: 223 VRPLY---------WNVA---RPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLP 270
           V              N          +N  +         +  H     +    +G P P
Sbjct: 219 VTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMH--HWCIPFSVDGQPAP 276

Query: 271 SVFWTQEGSQVLMFP-----GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 325
           S+ W   GS +                   + G LR+      + G +   A +  G  +
Sbjct: 277 SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQAS 336

Query: 326 VRAFLQVRE 334
                   +
Sbjct: 337 ASIMAAFMD 345

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 70.5 bits (172), Expect = 3e-13
 Identities = 12/104 (11%), Positives = 24/104 (23%), Gaps = 11/104 (10%)

Query: 66  KEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP-----------T 114
               +     +     T +          V G P P++ W  +   +             
Sbjct: 241 VSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEP 300

Query: 115 GRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
              + +    L++      + G Y     N  G  S        
Sbjct: 301 AANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 344

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 64.8 bits (157), Expect = 2e-11
 Identities = 23/173 (13%), Positives = 37/173 (21%), Gaps = 40/173 (23%)

Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319
           L C  EG  L    W     +             +   G          +     C A +
Sbjct: 178 LRCQVEGRGLEQAGWILTELEQ---SATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAEN 234

Query: 320 VAGSTTVRAFLQVREFCV----------------------------LPKGTFTLGQPNLA 351
             G   V   + V                                 L  G+       + 
Sbjct: 235 DVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIF 294

Query: 352 TGNSDLRRIAC---------DLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
           T   +                    ++G YT  A++  G+ S S   +    P
Sbjct: 295 TEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 84.9 bits (210), Expect = 3e-19
 Identities = 23/141 (16%), Positives = 41/141 (29%), Gaps = 11/141 (7%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPTGRAKILDDRSLQIEN 129
           KP     P    +  G  V   C         +  W  +             + SL I N
Sbjct: 4   KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE------TNSSLNIVN 57

Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQ 189
              +D G Y C  + +  S      + + +  D    +     V  G+   L C   +  
Sbjct: 58  AKFEDSGEYKCQHQQVNES----EPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNW 113

Query: 190 PEPTLHWKKNGQFIDLESSKS 210
               + + K+G+ +       
Sbjct: 114 DVYKVIYYKDGEALKYWYENH 134

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 60.7 bits (147), Expect = 6e-11
 Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 74  PISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGP 132
            + + S   V+ G  +   C       +  +++ +D   +        ++ ++ I N   
Sbjct: 88  LLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY----ENHNISITNATV 143

Query: 133 QDEGLYICDVENLVGSI-SLRASLTVH 158
           +D G Y C  +       S   ++TV 
Sbjct: 144 EDSGTYYCTGKVWQLDYESEPLNITVI 170

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 59.1 bits (143), Expect = 2e-10
 Identities = 30/179 (16%), Positives = 52/179 (29%), Gaps = 28/179 (15%)

Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL---GWLRV 223
            P   R+  GE   L C         +  W  NG   + E++ SL++        G    
Sbjct: 10  NPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE-ETNSSLNIVNAKFEDSGE--- 65

Query: 224 RPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNR------LSCFAE-GSPLPSVFWTQ 276
              Y    +      P Y+      LL+     V        L C       +  V + +
Sbjct: 66  ---YKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYK 122

Query: 277 EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR-AFLQVRE 334
           +G  +  +  N            + I     ED+G + C+              + V +
Sbjct: 123 DGEALKYWYEN----------HNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIK 171

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 31/164 (18%), Positives = 44/164 (26%), Gaps = 42/164 (25%)

Query: 260 LSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           L+C         S  W   G             L      +L I   + ED+G + C   
Sbjct: 24  LTCNGNNFFEVSSTKWFHNG------------SLSEETNSSLNIVNAKFEDSGEYKCQHQ 71

Query: 319 SVAGSTTVR-------AFLQVREFCVLPKGTFTL------------------GQP-NLAT 352
            V  S  V          LQ     V+      L                  G+      
Sbjct: 72  QVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY 131

Query: 353 GNSDLRRIACDLRETDSGLYTCTASSESG-ETSWSASLSVEPRP 395
            N ++  I  +    DSG Y CT         S   +++V   P
Sbjct: 132 ENHNIS-IT-NATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 81.6 bits (202), Expect = 4e-19
 Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 5/88 (5%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL-----DDRSLQIEN 129
                D +V  G  V    RV G+P P + W R+   +   + +           L+I  
Sbjct: 9   KVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILA 68

Query: 130 VGPQDEGLYICDVENLVGSISLRASLTV 157
               D G Y C   N  G+    A L V
Sbjct: 69  AERGDAGFYTCKAVNEYGARQCEARLEV 96

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 66.1 bits (162), Expect = 1e-13
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
            +S   +G P P V W +    V               EG    LRI   ++ DAGF+ C
Sbjct: 24  IMSIRVQGEPKPVVSWLRNRQPVRPDQR----RFAEEAEGGLCRLRILAAERGDAGFYTC 79

Query: 316 SALSVAGSTTVRAFLQVR 333
            A++  G+    A L+VR
Sbjct: 80  KAVNEYGARQCEARLEVR 97

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID 204
           F+    D  V  G+  ++     +G+P+P + W +N Q + 
Sbjct: 8   FKVSLMDQSVREGQDVIMSI-RVQGEPKPVVSWLRNRQPVR 47

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVE 392
                D+G YTC A +E G     A L V 
Sbjct: 68  AAERGDAGFYTCKAVNEYGARQCEARLEVR 97

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 81.8 bits (202), Expect = 6e-19
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 12/103 (11%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT------GRAKILDDRSLQIE 128
           +  PSD  V  G      C+  G P PTI W +   ++ T          +L   SL   
Sbjct: 13  VEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFL 72

Query: 129 NV-----GPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFR 165
            +        DEG+Y+C   N +G   S  ASL V        
Sbjct: 73  RIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHH 115

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 60.6 bits (147), Expect = 2e-11
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ-----KEDAGFF 313
            L+C AEG P P++ W + G +V     +   H  +   G+L    +      + D G +
Sbjct: 28  TLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY 87

Query: 314 VCSALSVAGS-TTVRAFLQV 332
           VC A +  G   +  A L+V
Sbjct: 88  VCVARNYLGEAVSHDASLEV 107

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 51.0 bits (122), Expect = 4e-08
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKS 210
               P D  V+ GE A L C   +G+P PT+ W K G+ ++ +    
Sbjct: 12  IVEHPSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDP 57

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 81.3 bits (201), Expect = 8e-19
 Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 9/99 (9%)

Query: 410 PGPPAAPVIL----NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHR 465
              PA P++      T   S TL W +P        P  GY +E    D   G     + 
Sbjct: 7   GPVPATPILQLEECCTHNNSATLSWKQPPLSTV---PADGYILEL--DDGNGGQFREVYV 61

Query: 466 ITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
              T  TV  L  +++Y   V+A N  G+   S    + 
Sbjct: 62  GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQ 100

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 88.6 bits (220), Expect = 8e-19
 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 76  SEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDRSLQIENVG 131
            +     V  G  V+FVCR  GDP P ILW      + +    GR  +  D +L++    
Sbjct: 390 RKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQ 449

Query: 132 PQDEGLYICDVENLVGSISLRASLTVH 158
            QD G Y+C   N  G+ S+ A L V 
Sbjct: 450 VQDNGTYLCIAANAGGNDSMPAHLHVR 476

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           +  C A+G P P++ W     +  +    + G L V  +GTL ++  Q +D G ++C A 
Sbjct: 404 QFVCRADGDPPPAILWLS--PRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAA 461

Query: 319 SVAGSTTVRAFLQVR 333
           +  G+ ++ A L VR
Sbjct: 462 NAGGNDSMPAHLHVR 476

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 80.4 bits (199), Expect = 1e-18
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 4/88 (4%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDR---SLQIENV 130
                   V  G    F+  V   P   + W  +  ++  + +    +     +L+I + 
Sbjct: 12  TLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDC 71

Query: 131 GPQDEGLYICDVENLVGSISLRASLTVH 158
              D G Y     N  G  S  A+L V 
Sbjct: 72  HTDDSGTYRAVCTNYKGEASDYATLDVT 99

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 59.6 bits (145), Expect = 3e-11
 Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 8/78 (10%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
           R     +  P   V W   G ++          +H T      TL I     +D+G +  
Sbjct: 27  RFILNVQSKPTAEVKWYHNGVEL-----QESSKIHYTNTSGVLTLEILDCHTDDSGTYRA 81

Query: 316 SALSVAGSTTVRAFLQVR 333
              +  G  +  A L V 
Sbjct: 82  VCTNYKGEASDYATLDVT 99

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 209
                +  RV  G+         + +P   + W  NG  +  ESSK
Sbjct: 11  ITLRMRSHRVPCGQNTRFIL-NVQSKPTAEVKWYHNGVELQ-ESSK 54

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 83.2 bits (205), Expect = 2e-18
 Identities = 18/148 (12%), Positives = 40/148 (27%), Gaps = 13/148 (8%)

Query: 77  EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEG 136
            P +  VL G +          P                     +   L +       +G
Sbjct: 32  GPGEEQVLIGRM-HHDVIFIEWPFRGFFDIHRSA----------NTFFLVVTAANISHDG 80

Query: 137 LYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHW 196
            Y+C ++     ++ +  L+V           + ++        + C      P P + W
Sbjct: 81  NYLCRMKLGETEVTKQEHLSVV-KPLTLSVHSERSQFPDFSVLTVTC-TVNAFPHPHVQW 138

Query: 197 KKNGQFIDLESSKSLDLSRRTLGWLRVR 224
                     ++ +  + +   G L V 
Sbjct: 139 LMPEGVEPAPTAANGGVMKEKDGSLSVA 166

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 72.8 bits (178), Expect = 8e-15
 Identities = 15/87 (17%), Positives = 23/87 (26%), Gaps = 8/87 (9%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP-----TGRAKILDDRSL 125
                     +     SV+   C V   P P + W   +G  P      G      D SL
Sbjct: 104 PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSL 163

Query: 126 QI---ENVGPQDEGLYICDVENLVGSI 149
            +    ++         C  +N     
Sbjct: 164 SVAVDLSLPKPWHLPVTCVGKNDKEEA 190

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 61.2 bits (148), Expect = 7e-11
 Identities = 20/166 (12%), Positives = 39/166 (23%), Gaps = 41/166 (24%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
            +S F  G     V   +    V+       G   + +      L +        G ++C
Sbjct: 25  EVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLC 84

Query: 316 SALSVAGSTTVRAFLQVRE---FCVLPK-------GTFTL-----GQPN----------- 349
                    T +  L V +     V  +          T+       P+           
Sbjct: 85  RMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGV 144

Query: 350 -----------LATGNSDLR-RIACDLRETDSGLYTCTASSESGET 383
                      +   +  L   +   L +      TC   ++  E 
Sbjct: 145 EPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEA 190

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 79.7 bits (197), Expect = 3e-18
 Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP--TGRAKILDDR----SLQIE 128
             +     +  G  V F CRV G+P P I W +D  ++   +    I  D     SL   
Sbjct: 12  EMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTT 71

Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVH 158
                D+G Y     N  G IS    L V 
Sbjct: 72  ASTLDDDGNYTIMAANPQGRISCTGRLMVQ 101

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 59.3 bits (144), Expect = 4e-11
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG--TLRIQGVQKEDAGFFVCS 316
             +C   G+P P ++W ++G Q+   P + +  +    +G  +L       +D G +   
Sbjct: 27  TFTCRVAGNPKPKIYWFKDGKQIS--PKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIM 84

Query: 317 ALSVAGSTTVRAFLQVREFCVLP 339
           A +  G  +    L V+     P
Sbjct: 85  AANPQGRISCTGRLMVQAVNSGP 107

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 6/40 (15%)

Query: 368 DSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSG 407
           D G YT  A++  G  S +  L V+           P SG
Sbjct: 77  DDGNYTIMAANPQGRISCTGRLMVQAVNSG------PSSG 110

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 209
           F  + K  ++  G      C    G P+P ++W K+G+ I  +S  
Sbjct: 11  FEMKLKHYKIFEGMPVTFTC-RVAGNPKPKIYWFKDGKQISPKSDH 55

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 79.7 bits (197), Expect = 3e-18
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK-MPTGRAKIL---DDRSLQIENV 130
           I  P D  V +G  VE   +V G    T  W +   +   +   K+    +   L I   
Sbjct: 11  IQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAA 70

Query: 131 GPQDEGLYICDVENLVGSISLRASLTV 157
             +  G Y   VEN +GS   + +LTV
Sbjct: 71  RQEHCGCYTLLVENKLGSRQAQVNLTV 97

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 56.6 bits (137), Expect = 5e-10
 Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 8/87 (9%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
            L     G+   +  W +   Q+         H+ V        L I   ++E  G +  
Sbjct: 26  ELFGKVTGTQPITCTWMKFRKQI-----QESEHMKVENSENGSKLTILAARQEHCGCYTL 80

Query: 316 SALSVAGSTTVRAFLQVREFCVLPKGT 342
              +  GS   +  L V +    P GT
Sbjct: 81  LVENKLGSRQAQVNLTVVDKPDPPAGT 107

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPG-PHAVHRMPDSG 407
             R+   G YT    ++ G      +L+V  +P  P      P SG
Sbjct: 69  AARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGTPSGPSSG 114

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 201
               P+D +V +GE+  L      G    T  W K  +
Sbjct: 10  IIQFPEDQKVRAGESVELFG-KVTGTQPITCTWMKFRK 46

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 79.4 bits (196), Expect = 4e-18
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 3/95 (3%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P   +   +  ++  S++L W  P    G    V+ Y V+Y     +    V   + +  
Sbjct: 8   PPAVSDIRVTRSSPSSLSLAWAVPRAPSG---AVLDYEVKYHEKGAEGPSSVRFLKTSEN 64

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
              +  LK   SY+  VRA +  G G         
Sbjct: 65  RAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQ 99

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 78.5 bits (194), Expect = 4e-18
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
           K     EP+   ++ GS +   C   G P+P   W +++  +          +   +  V
Sbjct: 3   KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-----TKKLYMVPYV 57

Query: 131 GPQDEGLYICDVENLVGSI-SLRASLTVHLLRD 162
             + +G Y C V N   S  S +  + +  L +
Sbjct: 58  DLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNN 90

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR 215
              EP   ++  G T +L+C    G P P   W KN   +  E+ K   +  
Sbjct: 6   ICVEPTSQKLMPGSTLVLQCVAV-GSPIPHYQWFKNELPLTHETKKLYMVPY 56

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 49.3 bits (118), Expect = 8e-08
 Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 11/70 (15%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            L C A GSP+P   W +               L    +    +  V  E  G + C   
Sbjct: 22  VLQCVAVGSPIPHYQWFKNELP-----------LTHETKKLYMVPYVDLEHQGTYWCHVY 70

Query: 319 SVAGSTTVRA 328
           +   S   + 
Sbjct: 71  NDRDSQDSKK 80

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 79.6 bits (196), Expect = 4e-18
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 4/100 (4%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGG--GVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
              P  PV+   T  S+ L W   +           + +++E     + + + V  +   
Sbjct: 16  LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHS-YGVI-YTGY 73

Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTL 507
           +T   V  L+P T Y F ++  +  G    SPV  +  T 
Sbjct: 74  ATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTR 113

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 86.4 bits (214), Expect = 7e-18
 Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P PP  P+I N    +V L W  P   GG  + V  YT+E   +   + W   A +   T
Sbjct: 10  PEPPRFPIIENILDEAVILSWKPPALDGG--SLVTNYTIEKREAMGGS-WSPCA-KSRYT 65

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
             T+  L+    Y F + AEN HG   P   +     
Sbjct: 66  YTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLI 102

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 67.6 bits (165), Expect = 7e-12
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKIL---DDRSLQ 126
           +P  I +P    V  G    F CRV     P + W +DD ++  + +       +D  L 
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 541

Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTV 157
           I  V   D+G Y    +N  G+      L V
Sbjct: 542 INRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
              C    S  P V W ++  ++       Y   +   +  L I  V+ +D G +   A 
Sbjct: 501 NFYCRVIASSPPVVTWHKDDRELK--QSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAK 558

Query: 319 SVAGSTTVRAFLQV 332
           +  G+     FL V
Sbjct: 559 NSYGTKEEIVFLNV 572

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 81.2 bits (200), Expect = 8e-18
 Identities = 29/220 (13%), Positives = 62/220 (28%), Gaps = 31/220 (14%)

Query: 411 GPPAAPV-ILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           GP    +    +   S  + W  P+P     + +  Y + +   +    W  A       
Sbjct: 2   GPVEVFITETPSQPNSHPIQWNAPQP-----SHISKYILRWRPKNSVGRWKEATIPGHLN 56

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV 529
           S T+  LKP   Y   + +   +G    +     T T     +    +  E         
Sbjct: 57  SYTIKGLKPGVVYEGQLISIQQYGHQEVTRFD-FTTTSTSTPVTSNTVTGETTPFSPLVA 115

Query: 530 VNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 589
            +   +    +++  ++W  +  +V    +                          ++ E
Sbjct: 116 TSES-VTEITASSFVVSWVSASDTVSGFRV-----------------------EYELSEE 151

Query: 590 KYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEG 629
                 +   +T TS  +  L    KY   +    +  E 
Sbjct: 152 GDEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQ 191

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 64.3 bits (156), Expect = 5e-12
 Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 8/136 (5%)

Query: 371 LYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGW 430
           L +         T +  + +    P          +   P    +  +   T  S  + W
Sbjct: 73  LISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSW 132

Query: 431 GEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAEN 490
                       V G+ VEY  S+            T+TS+ + DL P   Y+  V   +
Sbjct: 133 VSAS------DTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQIS 186

Query: 491 SHGLGIPSPVSPITRT 506
             G    S +   ++T
Sbjct: 187 EDGEQ--SLILSTSQT 200

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 78.1 bits (193), Expect = 1e-17
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 7/96 (7%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           PGP      ++T+  S+ + W  P    G   PV GY +                 +   
Sbjct: 8   PGPVENLQAVSTSPTSILITWEPPAYANG---PVQGYRLFCTEVS---TGKEQNIEVDGL 61

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPS-PVSPIT 504
           S  +  LK  T Y     A N +G G+ +  ++ +T
Sbjct: 62  SYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVT 97

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 77.4 bits (191), Expect = 1e-17
 Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 4/92 (4%)

Query: 70  IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP-TGRAKIL---DDRSL 125
           +KP  ++      + +G          G P PT  W   D          +       S+
Sbjct: 1   LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60

Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTV 157
              +    D G Y   V+N +G       + V
Sbjct: 61  FFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 58.1 bits (141), Expect = 7e-11
 Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 8/78 (10%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
            L     G+P P+  WT   S            L V  +    ++     ++ D+G +  
Sbjct: 21  NLEVDFIGAPDPTATWTVGDSGA-----ALAPELLVDAKSSTTSIFFPSAKRADSGNYKL 75

Query: 316 SALSVAGSTTVRAFLQVR 333
              +  G       + V+
Sbjct: 76  KVKNELGEDEAIFEVIVQ 93

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 1/44 (2%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES 207
                +  ++ +G T  LE     G P+PT  W        L  
Sbjct: 5   ILTASRKIKIKAGFTHNLEV-DFIGAPDPTATWTVGDSGAALAP 47

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 8/30 (26%), Positives = 12/30 (40%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVE 392
             +  DSG Y     +E GE      + V+
Sbjct: 64  SAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 78.5 bits (193), Expect = 1e-17
 Identities = 24/100 (24%), Positives = 33/100 (33%), Gaps = 16/100 (16%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPL---PTILWRRDDG-------------KMPTGRAK 118
           I +P   TV  G  + F+ +V  + L   PTI W +                K    R  
Sbjct: 11  IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHS 70

Query: 119 ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
            +    +QI        G Y C+V       S    L VH
Sbjct: 71  RVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH 110

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPG-PHAVHRMPDSG 407
             ++  +G Y C  + +    S S  L V    G    +   P SG
Sbjct: 81  KAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDSGPSSG 126

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 44.6 bits (105), Expect = 7e-06
 Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 10/86 (11%)

Query: 259 RLSCFAEGSPL---PSVFWTQEGSQVLMFPGNAYGHLHVT-------QEGTLRIQGVQKE 308
                 +   L   P++ W +     L      +  L  T           ++I   +  
Sbjct: 26  TFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDN 85

Query: 309 DAGFFVCSALSVAGSTTVRAFLQVRE 334
            AG + C         +    L+V E
Sbjct: 86  FAGNYRCEVTYKDKFDSCSFDLEVHE 111

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 78.6 bits (194), Expect = 1e-17
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY-FSSDLQTGWVVAAHRITS 468
           PGPP   +       SV L W  P    G    ++ Y + +  ++       V     ++
Sbjct: 28  PGPPMGILFPEVRTTSVRLIWQPPAAPNG---IILAYQITHRLNTTTANTATVEVLAPSA 84

Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
              T + LKP++ Y+F + A+   G G  +    +T  
Sbjct: 85  RQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTE 122

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 82.9 bits (205), Expect = 1e-17
 Identities = 35/224 (15%), Positives = 56/224 (25%), Gaps = 55/224 (24%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
              P        T  S++  W  P         + GY V     +             S+
Sbjct: 21  IPAPTDLKFTQVTPTSLSAQWTPPN------VQLTGYRVRVTPKEKTGPMKEINLAPDSS 74

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV 529
           S+ VS L   T Y   V A        P+     T      ++ P               
Sbjct: 75  SVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLE----NVSP--------------P 116

Query: 530 VNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 589
              R +     T + I+W     ++                           T  ++   
Sbjct: 117 RRAR-VTDATETTITISWRTKTETI---------------------------TGFQVDAV 148

Query: 590 KYNMAT---VMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGA 630
             N  T           SYT+T L+  T Y+ +L         +
Sbjct: 149 PANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSS 192

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 81.4 bits (201), Expect = 3e-17
 Identities = 30/224 (13%), Positives = 63/224 (28%), Gaps = 59/224 (26%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
             PP    + + T  ++T+ W            + G+ V+   ++     +    +    
Sbjct: 113 VSPPRRARVTDATETTITISWRTKT------ETITGFQVDAVPAN-GQTPIQRTIKPDVR 165

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV 529
           S T++ L+P T Y   +   N +    P  +   T         P +L            
Sbjct: 166 SYTITGLQPGTDYKIYLYTLNDNARSSPVVIDASTAIDA-----PSNL------------ 208

Query: 530 VNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 589
                 + T   ++ ++W+     +                           T   I +E
Sbjct: 209 ----RFLATTPNSLLVSWQPPRARI---------------------------TGYIIKYE 237

Query: 590 KYN----MATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEG 629
           K                T  T+T L   T+Y  +++      + 
Sbjct: 238 KPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKS 281

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 71.4 bits (175), Expect = 7e-14
 Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 6/95 (6%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
              P+    L TT  S+ + W  P       A + GY ++Y         VV   R   T
Sbjct: 202 IDAPSNLRFLATTPNSLLVSWQPPR------ARITGYIIKYEKPGSPPREVVPRPRPGVT 255

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
             T++ L+P T Y   V A  ++    P      T
Sbjct: 256 EATITGLEPGTEYTIYVIALKNNQKSEPLIGRKKT 290

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score = 79.8 bits (197), Expect = 3e-17
 Identities = 36/210 (17%), Positives = 61/210 (29%), Gaps = 34/210 (16%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPE-PRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
             PP        +  ++ + W +   P+   +     YTV +  +++           T+
Sbjct: 5   MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRW-KTNIPANTKYKNANATT 63

Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTK 528
            S  V+ LKP+T Y F V           S  +    T     LVP              
Sbjct: 64  LSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHG-TTFE---LVPT------SPPKDVT 113

Query: 529 VVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITW 588
           VV+           + + W+      P           G     +   I   ST V    
Sbjct: 114 VVS----KEGKPKTIIVNWQ-----PPSE-------ANG----KITGYIIYYSTDVNAEI 153

Query: 589 EKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
             + +  V       ++ +  L   T Y F
Sbjct: 154 HDWVIEPV--VGNRLTHQIQELTLDTPYYF 181

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score = 66.0 bits (161), Expect = 2e-12
 Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 8/100 (8%)

Query: 410 PGPPAAPVIL---NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY--FSSDLQTGWVVAAH 464
           P  P   V +        ++ + W  P    G    + GY + Y    +     WV+   
Sbjct: 105 PTSPPKDVTVVSKEGKPKTIIVNWQPPSEANG---KITGYIIYYSTDVNAEIHDWVIEPV 161

Query: 465 RITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
                +  + +L  DT Y F ++A NS G+G  S      
Sbjct: 162 VGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFR 201

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 83.6 bits (207), Expect = 3e-17
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 7/93 (7%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT-----GRAKILDDRSL 125
            PF +  P D  +  G + E  CR    P+ ++ W   +G + +      R  +L+D +L
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTL 409

Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
              +V   D G+Y C V N+ G+ +  A L V 
Sbjct: 410 NFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVS 442

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            L C     P+ SV W      VL    + +  + V  +GTL    V   D G + C   
Sbjct: 371 ELKCRT--PPMSSVKWLLPNGTVLS-HASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVT 427

Query: 319 SVAGSTTVRAFLQV 332
           +VAG++   A+L V
Sbjct: 428 NVAGNSNASAYLNV 441

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVH 401
            +  +D+G+YTC  ++ +G ++ SA L+V      H  H
Sbjct: 413 HVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHHHH 451

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 78.8 bits (194), Expect = 4e-17
 Identities = 25/141 (17%), Positives = 39/141 (27%), Gaps = 11/141 (7%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPTGRAKILDDRSLQIEN 129
           K     EP   +VL    V   C+    P   +  W  ++  + +         S  I+ 
Sbjct: 7   KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS------QASSYFIDA 60

Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQ 189
               D G Y C       S      L VH        +         +   L C   K  
Sbjct: 61  ATVNDSGEYRCQTNLSTLSDP--VQLEVH--IGWLLLQAPRWVFKEEDPIHLRCHSWKNT 116

Query: 190 PEPTLHWKKNGQFIDLESSKS 210
               + + +NG+        S
Sbjct: 117 ALHKVTYLQNGKDRKYFHHNS 137

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 54.9 bits (132), Expect = 6e-09
 Identities = 29/183 (15%), Positives = 51/183 (27%), Gaps = 36/183 (19%)

Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR----------- 215
           EP+   V   ++  L+C       + +  W  N   I    + S  +             
Sbjct: 13  EPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS-SQASSYFIDAATVNDSGEYRC 71

Query: 216 RTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFA-EGSPLPSVFW 274
           +T       P+   V      L       K    +         L C + + + L  V +
Sbjct: 72  QTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIH--------LRCHSWKNTALHKVTY 123

Query: 275 TQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG---STTVRAFLQ 331
            Q G     F                 I     +D+G + C  L  +    S TV   + 
Sbjct: 124 LQNGKDRKYFH----------HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVN--IT 171

Query: 332 VRE 334
           + +
Sbjct: 172 ITQ 174

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 52.6 bits (126), Expect = 3e-08
 Identities = 9/88 (10%), Positives = 24/88 (27%), Gaps = 6/88 (6%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
            + + +           +   C       L  + + ++             +    I   
Sbjct: 89  GWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH----HNSDFHIPKA 144

Query: 131 GPQDEGLYICDVENLVGSI-SLRASLTV 157
             +D G Y C       ++ S   ++T+
Sbjct: 145 TLKDSGSYFCRGLVGSKNVSSETVNITI 172

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 29/160 (18%), Positives = 48/160 (30%), Gaps = 42/160 (26%)

Query: 260 LSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           L C    SP   S  W    S +             +Q  +  I      D+G + C   
Sbjct: 27  LKCQGAYSPEDNSTQWFHNESLIS------------SQASSYFIDAATVNDSGEYRCQTN 74

Query: 319 SVAGSTTVRAFLQVR---EFCVLPKGTFTLGQP-NL---ATGNSDLRRIAC--------- 362
               S  V+  L+V         P+  F    P +L   +  N+ L ++           
Sbjct: 75  LSTLSDPVQ--LEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY 132

Query: 363 ----------DLRETDSGLYTCTASSESG-ETSWSASLSV 391
                          DSG Y C     S   +S + ++++
Sbjct: 133 FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 76.7 bits (189), Expect = 4e-17
 Identities = 19/113 (16%), Positives = 33/113 (29%), Gaps = 6/113 (5%)

Query: 51  GARGALSDDQWKLIAKEALIKP---FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRR 107
           G+ G+       +  +E    P    P           G  +  V    G P P ++W +
Sbjct: 1   GSSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK 60

Query: 108 DDGKMPTGRAKIL---DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
               + T R  +     D    +      D G Y   V+      +    + V
Sbjct: 61  GGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 3/76 (3%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            L    +G P P V WT+ G+ +     +         +    ++   + D+G +  S  
Sbjct: 43  NLVVPFQGKPRPQVVWTKGGAPL---DTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQ 99

Query: 319 SVAGSTTVRAFLQVRE 334
                 T    ++V E
Sbjct: 100 IENMKDTATIRIRVVE 115

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 7/34 (20%), Positives = 15/34 (44%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPG 396
               +DSG Y  +   E+ + + +  + V  + G
Sbjct: 85  QAARSDSGEYELSVQIENMKDTATIRIRVVEKAG 118

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 80.9 bits (199), Expect = 4e-17
 Identities = 43/279 (15%), Positives = 72/279 (25%), Gaps = 44/279 (15%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGD---PLPTILWRRDDGKMPTGRAKILDDRSLQIE--- 128
           +  P    V   +    VC + G        +     D ++        D  S +     
Sbjct: 9   LVSPRVLEV--DTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSV 66

Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKG 188
               +      C V     S     ++T++              V+ G    ++C   + 
Sbjct: 67  TAEDEGTQRLTCAVILGNQSQETLQTVTIYS-FPAPNVILTKPEVSEGTEVTVKC---EA 122

Query: 189 QPEPTLHWKKNGQFIDLESSKS---LDLSRRTLG-------WLRVRPLYWNVARPRANLN 238
            P        NG        ++   L  +    G        L V             L 
Sbjct: 123 HPRAK--VTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLI-HKNQTRELR 179

Query: 239 ----PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV 294
               PR   R       W         C A G+PLP +   ++G+  L            
Sbjct: 180 VLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP----------- 228

Query: 295 TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR 333
                     V ++  G ++C A S  G  T    + V 
Sbjct: 229 ----IGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 263

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 75.9 bits (186), Expect = 2e-15
 Identities = 26/137 (18%), Positives = 38/137 (27%), Gaps = 14/137 (10%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVG 131
           P P    +   V  G+ V   C     P   +       +    RA       L ++   
Sbjct: 99  PAPNVILTKPEVSEGTEVTVKCE--AHPRAKVTLNGVPAQPLGPRA------QLLLKATP 150

Query: 132 PQDEGLYICDVENLVGSISLRASLTVHLL-----RDDFRAEPKDTRVASGETALLECGPP 186
             +   + C     V    +  + T  L      R D R  P +            C   
Sbjct: 151 EDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQ-A 209

Query: 187 KGQPEPTLHWKKNGQFI 203
            G P P L   K+G F 
Sbjct: 210 WGNPLPELKCLKDGTFP 226

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 55.1 bits (132), Expect = 2e-08
 Identities = 36/270 (13%), Positives = 67/270 (24%), Gaps = 71/270 (26%)

Query: 173 VASGETALLECGPPKGQP--EPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNV 230
           +       + C      P  E  +H     Q ++   +   D        + V       
Sbjct: 15  LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKA-SVSVTAEDEGT 73

Query: 231 ARPRANL-NPRYIGRKMASLLIWNHPRVN--------------RLSCFAEGSPLPSVFWT 275
            R    +         + ++ I++ P  N               + C A      ++   
Sbjct: 74  QRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGV 133

Query: 276 QEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA-LSVAGSTTVR---AFLQ 331
                             +     L ++   +++   F CSA L VAG    +     L+
Sbjct: 134 PAQP--------------LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELR 179

Query: 332 V------------REFCVLPKGTFTL-----------------GQPNLATGNSDLRRIAC 362
           V              +        T                  G   L  G  +   +  
Sbjct: 180 VLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG--ESVTV-- 235

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVE 392
                  G Y C A S  GE +   +++V 
Sbjct: 236 --TRDLEGTYLCRARSTQGEVTREVTVNVL 263

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 29/206 (14%), Positives = 57/206 (27%), Gaps = 41/206 (19%)

Query: 260 LSCFAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           + C  +G  P+             + P   YG+   + + ++ +   + E      C+ +
Sbjct: 23  VVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVT-AEDEGTQRLTCAVI 81

Query: 319 SVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNS----------------------- 355
               S      + +  F   P     L +P ++ G                         
Sbjct: 82  LGNQSQETLQTVTIYSF---PAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPL 138

Query: 356 --DLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPP 413
               + +     E +   ++C+A+ E        + + E R     V   P       P 
Sbjct: 139 GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELR-----VLYGPRLDERDCPG 193

Query: 414 AAPVILNTTRGSVTLG---WGEPEPR 436
                 N+     T     WG P P 
Sbjct: 194 NWTWPENSQ---QTPMCQAWGNPLPE 216

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 76.2 bits (187), Expect = 4e-17
 Identities = 24/100 (24%), Positives = 32/100 (32%), Gaps = 16/100 (16%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPL---PTILWRRDDG-------------KMPTGRAK 118
           +  P D  V  G  + F  RV G  L   P + W +                     RA 
Sbjct: 8   VMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRAS 67

Query: 119 ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
            +    L I +  P   G Y C+V           +LTVH
Sbjct: 68  KVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 17/86 (19%), Positives = 24/86 (27%), Gaps = 10/86 (11%)

Query: 259 RLSCFAEGSPL---PSVFWTQEGSQVLMFPGNAYGHLHVTQE-------GTLRIQGVQKE 308
             S    G+ L   P V W +     L      +  LH + +         L I   Q  
Sbjct: 23  TFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA 82

Query: 309 DAGFFVCSALSVAGSTTVRAFLQVRE 334
             G + C   +          L V E
Sbjct: 83  FTGSYRCEVSTKDKFDCSNFNLTVHE 108

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 41.1 bits (96), Expect = 9e-05
 Identities = 7/29 (24%), Positives = 14/29 (48%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSV 391
           D +   +G Y C  S++      + +L+V
Sbjct: 78  DAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108

 Score = 76.3 bits (188), Expect = 5e-17
 Identities = 25/97 (25%), Positives = 32/97 (32%), Gaps = 8/97 (8%)

Query: 410 PGPPAAPVI--LNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
           P  P    +       G +   W  P    G    +  Y VEY  S     W     R  
Sbjct: 8   PDAPRNLQLSLPREAEGVIVGHWAPPIHTHG---LIREYIVEYSRSG-SKMWAS--QRAA 61

Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
           S    + +L  +T Y   V A  S G+G  S    IT
Sbjct: 62  SNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSIT 98

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 81.0 bits (200), Expect = 5e-17
 Identities = 29/221 (13%), Positives = 56/221 (25%), Gaps = 48/221 (21%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
              P   ++ + +     + W  P       A V    ++Y     + G      +   +
Sbjct: 15  IDGPTQILVRDVSDTVAFVEWTPPR------AKVDFILLKYGLVGGEGGKTTFRLQPPLS 68

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV 529
             +V  L+P + Y   + A         S     T         P++L            
Sbjct: 69  QYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTE-----IDAPKNL------------ 111

Query: 530 VNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 589
                +    +T++ + W+ S                  KV         A         
Sbjct: 112 ----RVGSRTATSLDLEWDNSEAEA-----------QEYKV----VYSTLAGEQYHEVL- 151

Query: 590 KYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGA 630
                       TT  T+T L   T+Y   +     + +  
Sbjct: 152 -----VPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSI 187

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 74.8 bits (184), Expect = 6e-15
 Identities = 38/225 (16%), Positives = 68/225 (30%), Gaps = 58/225 (25%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYF--SSDLQTGWVVAAHRIT 467
              P    + + T  S+ L W   E      A    Y V Y   + +     +V      
Sbjct: 105 IDAPKNLRVGSRTATSLDLEWDNSE------AEAQEYKVVYSTLAGEQYHEVLVPKGIGP 158

Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGT 527
           +T  T++DL P T Y   + A  +    IP+ ++  T         P+ L          
Sbjct: 159 TTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTE-----LDSPRDL---------- 203

Query: 528 KVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRIT 587
                  +  ++ T++ + W  + G +                              RIT
Sbjct: 204 ------MVTASSETSISLIWTKASGPI---------------------------DHYRIT 230

Query: 588 WEKYN--MATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGA 630
           +   +   + V      TSYT+T L    +Y   +       +  
Sbjct: 231 FTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSL 275

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
              P   ++  ++  S++L W +         P+  Y + +  S   +  V        T
Sbjct: 197 LDSPRDLMVTASSETSISLIWTKAS------GPIDHYRITFTPSSGISSEVTVP--RDRT 248

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
           S T++DL+P   Y+  + AE      + S V   T
Sbjct: 249 SYTLTDLEPGAEYIISITAERGRQQSLESTVDAFT 283

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 75.9 bits (187), Expect = 6e-17
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P            + SV+L W EPE   G    ++ Y ++Y+  D +     +  +  +T
Sbjct: 11  PSQVVVIRQERAGQTSVSLLWQEPEQPNG---IILEYEIKYYEKD-KEMQSYSTLKAVTT 66

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
             TVS LKP T Y+F VRA  S G G  S    + 
Sbjct: 67  RATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVE 101

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 75.2 bits (185), Expect = 1e-16
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P        ++ T  S+TL W +PE   G    ++ Y + Y+  +    +  +  R  + 
Sbjct: 8   PSTVPIMHQVSATMRSITLSWPQPEQPNG---IILDYEIRYYEKE-HNEFNSSMARSQTN 63

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
           +  +  L+P   Y+  VRA    G G  S      
Sbjct: 64  TARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQ 98

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score = 75.6 bits (186), Expect = 1e-16
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           PGP            S+ + W EP  + G    + GY + +   +     V       + 
Sbjct: 18  PGPVGHLSFSEILDTSLKVSWQEPGEKNG---ILTGYRISWEEYNRTNTRVTHYLPNVTL 74

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVS 501
              V+ L   T+Y   V A  S G G  S  +
Sbjct: 75  EYRVTGLTALTTYTIEVAAMTSKGQGQVSAST 106

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT-----GRAKILDDRSL 125
            P  +  P+D  V  G   E  CR     L ++ W   +G + T      R  +L D +L
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTL 399

Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTV 157
              NV  QD G+Y C V N VG+ +  A+L V
Sbjct: 400 NFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            L C A  S   SV W      V+   G     + V  +GTL    V  +D G + C   
Sbjct: 360 ELKCRASTSL-TSVSWITPNGTVMT-HGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVS 417

Query: 319 SVAGSTTVRAFLQV 332
           +  G+TT  A L V
Sbjct: 418 NSVGNTTASATLNV 431

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPH 398
           ++   D+G+YTC  S+  G T+ SA+L+V      H
Sbjct: 403 NVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHHH 438

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 76.8 bits (189), Expect = 3e-16
 Identities = 27/145 (18%), Positives = 43/145 (29%), Gaps = 11/145 (7%)

Query: 67  EALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPTGRAKILDDRSL 125
           E L K     EP    VL    V   C+    P   +  W  ++  + +         S 
Sbjct: 3   EDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISS------QASSY 56

Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGP 185
            I+     D G Y C  +    ++S    L VH        +         +   L C  
Sbjct: 57  FIDAATVDDSGEYRCQTQL--STLSDPVQLEVH--IGWLLLQAPRWVFKEEDPIHLRCHS 112

Query: 186 PKGQPEPTLHWKKNGQFIDLESSKS 210
            K      + + +NG+        S
Sbjct: 113 WKNTALHKVTYLQNGKGRKYFHHNS 137

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 9/88 (10%), Positives = 23/88 (26%), Gaps = 6/88 (6%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
            + + +           +   C       L  + + ++             +    I   
Sbjct: 89  GWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFH----HNSDFYIPKA 144

Query: 131 GPQDEGLYICDVENLVGSI-SLRASLTV 157
             +D G Y C       ++ S    +T+
Sbjct: 145 TLKDSGSYFCRGLVGSKNVSSETVQITI 172

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 28/181 (15%), Positives = 51/181 (28%), Gaps = 32/181 (17%)

Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR----------- 215
           EP+  RV   ++  L+C       + +  W  N   I    + S  +             
Sbjct: 13  EPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLIS-SQASSYFIDAATVDDSGEYRC 71

Query: 216 RTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAE-GSPLPSVFW 274
           +T       P+   V      L       K    +         L C +   + L  V +
Sbjct: 72  QTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIH--------LRCHSWKNTALHKVTY 123

Query: 275 TQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF-LQVR 333
            Q G     F  N              I     +D+G + C  L  + + +     + + 
Sbjct: 124 LQNGKGRKYFHHN----------SDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITIT 173

Query: 334 E 334
           +
Sbjct: 174 Q 174

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 26/166 (15%), Positives = 44/166 (26%), Gaps = 41/166 (24%)

Query: 260 LSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           L C    SP   S  W    S +             +Q  +  I     +D+G + C   
Sbjct: 27  LKCQGAYSPEDQSTQWFHNESLIS------------SQASSYFIDAATVDDSGEYRCQTQ 74

Query: 319 SVAGSTTVR-------AFLQVREFCVLPKGTFTL------------------GQPNLATG 353
               S  V+         LQ   +    +    L                  G+      
Sbjct: 75  LSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFH 134

Query: 354 NSDLRRIACDLRETDSGLYTCTASSESG-ETSWSASLSV-EPRPGP 397
           ++    I       DSG Y C     S   +S +  +++ +     
Sbjct: 135 HNSDFYIP-KATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVS 179

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 78.4 bits (192), Expect = 3e-16
 Identities = 49/320 (15%), Positives = 91/320 (28%), Gaps = 93/320 (29%)

Query: 68  ALIKPFPISEPSDATVLSGSVVEFVCRV---GGDPLPTILWRR---------------DD 109
           +   P          V  G  V   C V       +  + W                  +
Sbjct: 2   SQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSN 61

Query: 110 GKMPTGRAK---------ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLL 160
             +PTGR +           +D SL +++V   DEG+Y C++     S+ ++  + + +L
Sbjct: 62  LSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL 121

Query: 161 RDDFRAEPKDTRVASGETALLECG--PPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
            ++    P+D RV  G+T  + C     + +    ++W  +      E +     S    
Sbjct: 122 PEE----PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRS 177

Query: 219 GWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEG 278
           G  +    + N      +     I R   S+ +                           
Sbjct: 178 GKFQSLGRFRNRVDLTGD-----ISRNDGSIKLQT------------------------- 207

Query: 279 SQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE---- 334
                                     V++ D G + CS       +     L V +    
Sbjct: 208 --------------------------VKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQ 241

Query: 335 FCVLPKGTFTLGQPNLATGN 354
             + P      GQ  +  GN
Sbjct: 242 RTISPTPPTDKGQQGILNGN 261

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 75.7 bits (186), Expect = 4e-16
 Identities = 21/149 (14%), Positives = 46/149 (30%), Gaps = 20/149 (13%)

Query: 75  ISEPSDATVLSGSVVEFVCR--VGGDPLPTILWRRDDGK-------------MPTGRAKI 119
           I+   +     G  +          D +  I W +   K                   K+
Sbjct: 3   ITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKL 62

Query: 120 LDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETA 179
             + +L+I+++   D+ +Y   + +  G   L     + +         K     +    
Sbjct: 63  FKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ----ERVSKPKISWTCINT 118

Query: 180 LLECGPPKGQPEPTLHWKKNGQFIDLESS 208
            L C    G  +P L+  ++G+ + L   
Sbjct: 119 TLTCEVMNG-TDPELNLYQDGKHLKLSQR 146

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 67.6 bits (165), Expect = 3e-13
 Identities = 20/163 (12%), Positives = 47/163 (28%), Gaps = 27/163 (16%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMF-------PGNAYGHLHVTQEGTLRIQGVQKEDAG 311
            +  F     +  + W +   +  +                 + + GTL+I+ ++ +D  
Sbjct: 20  DIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQD 79

Query: 312 FFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNL-----ATGNSDL--------- 357
            +  S     G   +     ++    + K   +    N          +D          
Sbjct: 80  IYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGK 139

Query: 358 ------RRIACDLRETDSGLYTCTASSESGETSWSASLSVEPR 394
                 R I      + S  + CTA ++  + S    +S   +
Sbjct: 140 HLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSCPEK 182

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 10/84 (11%), Positives = 21/84 (25%), Gaps = 9/84 (10%)

Query: 74  PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQ 133
            +S+P      +       C V     P +   +D   +          + +        
Sbjct: 105 RVSKPK--ISWTCINTTLTCEVMNGTDPELNLYQDGKHLKL-------SQRVITHKWTTS 155

Query: 134 DEGLYICDVENLVGSISLRASLTV 157
               + C   N V   S    ++ 
Sbjct: 156 LSAKFKCTAGNKVSKESSVEPVSC 179

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 73.1 bits (180), Expect = 4e-16
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 5/92 (5%)

Query: 76  SEPSDATVLSGSVVEFVCRVGGDPLPT-ILWRRDDGKM-PTGRAKILDD---RSLQIENV 130
            +   A    G  V++VC++      T + W     ++  + + +I  +     L ++++
Sbjct: 6   GQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDI 65

Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHLLRD 162
              D+G Y C V N  G  S  A L V  +R+
Sbjct: 66  TKLDDGTYRCKVVNDYGEDSSYAELFVKGVRE 97

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 9/81 (11%)

Query: 259 RLSCFAEGSPLPS-VFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFV 314
           +  C  E     + V W     Q+            +T E     L ++ + K D G + 
Sbjct: 20  KYVCKIENYDQSTQVTWYFGVRQL-----ENSEKYEITYEDGVAILYVKDITKLDDGTYR 74

Query: 315 CSALSVAGSTTVRAFLQVREF 335
           C  ++  G  +  A L V+  
Sbjct: 75  CKVVNDYGEDSSYAELFVKGV 95

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVE 392
           D+ + D G Y C   ++ GE S  A L V+
Sbjct: 64  DITKLDDGTYRCKVVNDYGEDSSYAELFVK 93

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 73.6 bits (181), Expect = 5e-16
 Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 9/99 (9%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDD----RSLQIEN 129
           I +  D  V  GS   F CR+       + W  D   +      +I         L +  
Sbjct: 17  IEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQ 76

Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEP 168
           +  +D G          G     A+L V      F    
Sbjct: 77  LALKDSGTIYF----EAGDQRASAALRVTEKPSVFSRSG 111

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 16/96 (16%), Positives = 27/96 (28%), Gaps = 21/96 (21%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAY------GHLHVTQEGTLRIQGVQKEDAGF 312
              C    +    V W  + + +              G  H      L ++ +  +D+G 
Sbjct: 32  TFRCRISPANYEPVHWFLDKTPL--HANELNEIDAQPGGYH-----VLTLRQLALKDSGT 84

Query: 313 FVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQP 348
                   AG     A L+V E        F+   P
Sbjct: 85  IYF----EAGDQRASAALRVTE----KPSVFSRSGP 112

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 1/49 (2%)

Query: 153 ASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 201
           +S  V   R     + +D  V  G +A   C          +HW  +  
Sbjct: 5   SSGLVQGRRVHIIEDLEDVDVQEGSSATFRCR-ISPANYEPVHWFLDKT 52

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 5/45 (11%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSG 407
            L   DSG     A    G+   SA+L V  +P        P SG
Sbjct: 76  QLALKDSGTIYFEA----GDQRASAALRVTEKP-SVFSRSGPSSG 115

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 73.2 bits (179), Expect = 5e-16
 Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 17/104 (16%)

Query: 72  PFP--ISEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRDDGKMP------------TG 115
           P P    +P   + + GS V F C          T  W  D+  +              G
Sbjct: 9   PXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQG 68

Query: 116 RAKILDDRSLQIENVGPQDEGLYICDVENLVGSI-SLRASLTVH 158
              +     L++ NV    EG Y C + N  GS  S+ A LT++
Sbjct: 69  GELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 51.6 bits (123), Expect = 2e-08
 Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 9/83 (10%)

Query: 259 RLSCFAEGSPLPSVFWT--------QEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDA 310
             +C A  S    + +         Q+          A G   +     LR++ V+    
Sbjct: 29  SFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSE 88

Query: 311 GFFVCSALSVAGSTT-VRAFLQV 332
           G + C   +  GS+  V A L +
Sbjct: 89  GXYQCVISNHFGSSYSVXAXLTI 111

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score = 73.4 bits (180), Expect = 6e-16
 Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 16/126 (12%)

Query: 380 SGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPE-PRGG 438
           SG + +  S+     P                PP     +  T  +V + W +   P+  
Sbjct: 3   SGSSGFPTSVPDLSTP--------------MLPPVGVQAVALTHDAVRVSWADNSVPKNQ 48

Query: 439 GVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPS 498
             + V  YTV + +S   +    +    TS S T + LKP+T Y F V    +      S
Sbjct: 49  KTSEVRLYTVRWRTSFSASAKYKSED-TTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWS 107

Query: 499 PVSPIT 504
             +  T
Sbjct: 108 MTAHAT 113

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107

 Score = 72.9 bits (179), Expect = 6e-16
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 9/97 (9%)

Query: 410 PGPPAAPVI--LNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
               +   +  +      + L W    PR  G    + Y +   + D +   +V      
Sbjct: 8   AESLSGLSLKLVKKEPRQLELTWAGSRPRNPG--GNLSYELHVLNQDEEWHQMV-----L 60

Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
              + ++ L+PDT+Y+  VR     G G  SP     
Sbjct: 61  EPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFR 97

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101

 Score = 72.5 bits (178), Expect = 7e-16
 Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 4/97 (4%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
              P    ++  T  S+ + W  P         V  Y + Y  +   +         +S+
Sbjct: 5   SSVPTKLEVVAATPTSLLISWDAPMSSS----SVYYYRITYGETGGNSPVQEFTVPYSSS 60

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
           + T+S L P   Y   V A      G     SPI+  
Sbjct: 61  TATISGLSPGVDYTITVYAWGEDSAGYMFMYSPISIN 97

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126

 Score = 73.3 bits (180), Expect = 8e-16
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 403 MPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVA 462
             D    P  P++ + +     S+ + W  PE +      V GY + Y         +  
Sbjct: 21  DLDETRVPEVPSS-LHVRPLVTSIVVSWTPPENQNI---VVRGYAIGYGIGSPHAQTIKV 76

Query: 463 AHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
            ++      T+ +L P + Y+  ++A N+ G GIP   S +TR 
Sbjct: 77  DYKQRYY--TIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRP 118

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 72.8 bits (179), Expect = 8e-16
 Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 11/102 (10%)

Query: 411 GPPAAPVIL-----NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY--FSSDLQTGWVVAA 463
           GP +AP  L          +V + W  P    G    +  Y + Y    +     W++  
Sbjct: 7   GPTSAPKDLTVITREGKPRAVIVSWQPPLEANG---KITAYILFYTLDKNIPIDDWIMET 63

Query: 464 HRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPS-PVSPIT 504
                 +  + DL  DT Y F ++A NS G+G  S P+   T
Sbjct: 64  ISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRT 105

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 72.8 bits (179), Expect = 9e-16
 Identities = 25/124 (20%), Positives = 39/124 (31%), Gaps = 19/124 (15%)

Query: 381 GETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGV 440
           G +  S  + V  + G             PG P        +  S+ L W  P       
Sbjct: 1   GSSGSSGDIQVITQTGV------------PGQPLNFKAEPESETSILLSWTPPRS----- 43

Query: 441 APVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPV 500
             +  Y + Y   +   G          TS  +  LKP++ Y F + A +  GLG  +  
Sbjct: 44  DTIANYELVYKDGE--HGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAE 101

Query: 501 SPIT 504
               
Sbjct: 102 ISAR 105

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 74.9 bits (184), Expect = 1e-15
 Identities = 29/220 (13%), Positives = 59/220 (26%), Gaps = 48/220 (21%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
              P     ++ T  S+ L W          + +IGY +   ++             +  
Sbjct: 23  VPQPTDLSFVDITDSSIGLRWTPLNS-----STIIGYRITVVAAGEGIPIFEDFVDSSVG 77

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV 529
             TV+ L+P   Y   V    + G   P+ ++  T         P  L            
Sbjct: 78  YYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPP-----PTDL------------ 120

Query: 530 VNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 589
                        +R+TW                      V                   
Sbjct: 121 ----RFTNIGPDTMRVTWAPPPSIDLT----------NFLVR------------YSPVKN 154

Query: 590 KYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEG 629
           + ++A +  + +  +  +T+L   T+Y   +   ++  E 
Sbjct: 155 EEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHES 194

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 64.1 bits (156), Expect = 6e-12
 Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 7/97 (7%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
             PP      N    ++ + W  P         +  + V Y     +      +   +  
Sbjct: 114 VPPPTDLRFTNIGPDTMRVTWAPPPS-----IDLTNFLVRYSPVKNEEDVAELSISPSDN 168

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
           ++ +++L P T Y+  V +         +P+    +T
Sbjct: 169 AVVLTNLLPGTEYVVSVSSVYEQHES--TPLRGRQKT 203

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 72.1 bits (177), Expect = 1e-15
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P  P++ + +      + + W  P         V GY + Y         V    +    
Sbjct: 18  PDQPSS-LHVRPQTNCIIMSWTPPLNPNI---VVRGYIIGYGVGSPYAETVRVDSKQRYY 73

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
             ++  L+  + Y+  ++A N+ G G+P   S  TR+
Sbjct: 74  --SIERLESSSHYVISLKAFNNAGEGVPLYESATTRS 108

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100

 Score = 71.3 bits (175), Expect = 2e-15
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 8/98 (8%)

Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSI 471
           PP    + N T  +  + W  P        P+ G  V +   +  +         + TS+
Sbjct: 4   PPFNIKVTNITLTTAVVTWQPPI------LPIEGILVTFGRKNDPSDETTVDLTSSITSL 57

Query: 472 TVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGL 509
           T+++L+P+T+Y   + A N        PVS    T  L
Sbjct: 58  TLTNLEPNTTYEIRIVARNGQQYS--PPVSTTFTTGSL 93

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 75.7 bits (185), Expect = 2e-15
 Identities = 17/112 (15%), Positives = 26/112 (23%), Gaps = 25/112 (22%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP----------------- 113
               +S      V  G+ +   C         + W                         
Sbjct: 136 NNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFG 195

Query: 114 --------TGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
                    GRA     R+L I      D G   C++    G +    S T+
Sbjct: 196 ITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 74.9 bits (183), Expect = 3e-15
 Identities = 30/173 (17%), Positives = 48/173 (27%), Gaps = 45/173 (26%)

Query: 76  SEPSDATVLSGSVVEFVCRV---GGDPLPTILWRRDDG---------------------- 110
           +  ++  V +G  VE  C          P I W +                         
Sbjct: 7   TTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFV 66

Query: 111 ---------KMPTGRAKI--LDDRSLQIENVGPQDEGLYICDVENL-----VGSISLRAS 154
                        GRA +  L   +L++ +V PQD G Y C V         G  +    
Sbjct: 67  ESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVV 126

Query: 155 LTVHLL---RDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID 204
           L V       +   +  +  +V  G    + C P        + W     F +
Sbjct: 127 LKVTGHTPSNNVHVSTAEVVQVDEGNDITMTC-PCTDCANANVTWYTGPTFFE 178

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 67.6 bits (164), Expect = 1e-12
 Identities = 27/242 (11%), Positives = 48/242 (19%), Gaps = 74/242 (30%)

Query: 165 RAEPKDTRVASGETALLEC--GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLR 222
           R    +  V +G T  L C          P + W K             + + +  G   
Sbjct: 6   RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGF 65

Query: 223 VRPL-----------------------------------YWNVARPRANLNP-------- 239
           V                                      YW      +            
Sbjct: 66  VESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSV 125

Query: 240 --RYIGRKMASLLIWNHPRVN--------RLSCFAEGSPLPSVFWTQEGSQV-------- 281
             +  G   ++ +  +   V          ++C        +V W    +          
Sbjct: 126 VLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTY 185

Query: 282 -----------LMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL 330
                        F     G    +    L I+  +  DAG   C   +  G        
Sbjct: 186 QPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS 245

Query: 331 QV 332
            +
Sbjct: 246 TI 247

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 71.5 bits (175), Expect = 2e-15
 Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 10/102 (9%)

Query: 410 PGPPAAP---VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI 466
                +P   ++   T   V L W  PE        + GY +E        GW V    +
Sbjct: 4   GSSGLSPPRGLVAVRTPRGVLLHWDPPELVP---KRLDGYVLEG--RQGSQGWEVLDPAV 58

Query: 467 --TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
             T T + V  L  D  Y F + A     +  PS  + ++ +
Sbjct: 59  AGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTS 100

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 70.8 bits (174), Expect = 3e-15
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDD---RSLQIENV 130
             E ++  V       F C+    P  T+ WR+   ++  +G+ +   +     L I  +
Sbjct: 12  TEELTNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISAL 70

Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHLLRDDF 164
              D   Y CD    +G    RA L V   R   
Sbjct: 71  EKADSDTYTCD----IGQAQSRAQLLVQGRRSGP 100

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 13/79 (16%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
             +C     P  +V W +   ++        G    +QEG    L I  ++K D+  + C
Sbjct: 27  VFTCKT-EHPAATVTWRKGLLEL--RAS---GKHQPSQEGLTLRLTISALEKADSDTYTC 80

Query: 316 SALSVAGSTTVRAFLQVRE 334
                 G    RA L V+ 
Sbjct: 81  ----DIGQAQSRAQLLVQG 95

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 209
           F  E  + +V    TA+  C      P  T+ W+K     +L +S 
Sbjct: 11  FTEELTNLQVEEKGTAVFTC--KTEHPAATVTWRKGLL--ELRASG 52

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 76.0 bits (187), Expect = 3e-15
 Identities = 26/224 (11%), Positives = 59/224 (26%), Gaps = 49/224 (21%)

Query: 410 PGPPAAPVILNTTRG----SVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHR 465
              P+    ++ +      +V L W    P       ++ Y V          W      
Sbjct: 5   SKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEAN-GKILDYEVTLTR------WKSHLQN 57

Query: 466 ITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARL 525
            T  +  ++    +  Y+  +   N  G    + +          +  P           
Sbjct: 58  YTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVL--TIPACDFQATHP----------- 104

Query: 526 GTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVR 585
              V++L+         + + W     SV ++            ++    L   A     
Sbjct: 105 ---VMDLK--AFPKDNMLWVEWTTPRESVKKY------------ILEWCVLSDKAPC--I 145

Query: 586 ITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEG 629
             W++       +     +Y   +L +   Y   + P +    G
Sbjct: 146 TDWQQ------EDGTVHRTYLRGNLAESKCYLITVTPVYADGPG 183

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 31/226 (13%), Positives = 57/226 (25%), Gaps = 45/226 (19%)

Query: 395 PGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSD 454
               AV  +P        P   +        + + W  P         ++ + V    + 
Sbjct: 86  KSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKK--YILEWCVLSDKAP 143

Query: 455 LQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVP 514
             T W          +    +L     Y+  V    + G G P  +    +        P
Sbjct: 144 CITDWQQE-DGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLK-----QAPP 197

Query: 515 QHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLR 574
                       +K   +R      + A      + W  +P   +D     +        
Sbjct: 198 ------------SKGPTVRTKKVGKNEA-----VLEWDQLP---VDVQNGFI-------- 229

Query: 575 ELIPTASTAVRITWEKY--NMATVMNAATTTSYTVTHLRKFTKYEF 618
                      I +     N   V   ++ T YT++ L   T Y  
Sbjct: 230 -------RNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMV 268

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 63.7 bits (155), Expect = 3e-11
 Identities = 19/95 (20%), Positives = 28/95 (29%), Gaps = 3/95 (3%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P            +    L W +  P       +  YT+ Y +       V      + T
Sbjct: 197 PSKGPTVRTKKVGKNEAVLEWDQL-PVDVQNGFIRNYTIFYRTIIGNETAVN--VDSSHT 253

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
             T+S L  DT YM  + A    G       +  T
Sbjct: 254 EYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFTFTT 288

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 73.1 bits (179), Expect = 3e-15
 Identities = 22/137 (16%), Positives = 36/137 (26%), Gaps = 15/137 (10%)

Query: 81  ATVLSGSVVEFVCRVGGDPLPTI--LWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLY 138
                GS +   C +           W +    +       L  +  + +       G Y
Sbjct: 8   TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA---LPGQKTEFKVDSDDQWGEY 64

Query: 139 ICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLEC---GPPKGQPEPTLH 195
            C            A++ +H      +A      +  GETA+L C     P   P     
Sbjct: 65  SCVFLP---EPMGTANIQLH-GPPRVKAVKSSEHINEGETAMLVCKSESVP---PVTDWA 117

Query: 196 WKKNGQFIDLESSKSLD 212
           W K     D       +
Sbjct: 118 WYKITDSEDKALMNGSE 134

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 67.0 bits (163), Expect = 4e-13
 Identities = 21/104 (20%), Positives = 32/104 (30%), Gaps = 12/104 (11%)

Query: 67  EALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPT-ILWRRDDGKMPTGRAKILDDR-- 123
           +    P   +  S   +  G     VC+    P  T   W +             + R  
Sbjct: 79  QLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFF 138

Query: 124 --------SLQIENVGPQ-DEGLYICDVENLVGSISLRASLTVH 158
                    L IEN+  + D G Y C+  +  GS     +L V 
Sbjct: 139 VSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 182

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 60.4 bits (146), Expect = 1e-10
 Identities = 29/181 (16%), Positives = 48/181 (26%), Gaps = 28/181 (15%)

Query: 173 VASGETALLEC---GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP---- 225
              G   LL C               W K G  +  ++        +   +         
Sbjct: 10  EDLGSKILLTCSLNDSAT--EVTGHRWLKGGVVLKEDALPG-----QKTEFKVDSDDQWG 62

Query: 226 ----LYWNVARPRANLN---PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLP-SVFWTQE 277
               ++       AN+    P  +    +S  I        L C +E  P      W + 
Sbjct: 63  EYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETA-MLVCKSESVPPVTDWAWYKI 121

Query: 278 GSQVLMFPGNA----YGHLHVTQEGTLRIQGVQ-KEDAGFFVCSALSVAGSTTVRAFLQV 332
                    N     +          L I+ +  + D G + C+  S  GS      L+V
Sbjct: 122 TDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181

Query: 333 R 333
           R
Sbjct: 182 R 182

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 52.3 bits (125), Expect = 5e-08
 Identities = 21/174 (12%), Positives = 34/174 (19%), Gaps = 50/174 (28%)

Query: 259 RLSCFAEGSPLP--SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 316
            L+C    S        W + G  +                     +    +  G + C 
Sbjct: 17  LLTCSLNDSATEVTGHRWLKGGVVL---------KEDALPGQKTEFKVDSDDQWGEYSCV 67

Query: 317 ALSVAGSTTVRAFLQVREFCVLP-----------------------------KGTFTLGQ 347
            L     T             +                              K T +  +
Sbjct: 68  FLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDK 127

Query: 348 PNLA----------TGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSV 391
             +           +       I     E D G Y C  +S  G      +L V
Sbjct: 128 ALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 73.2 bits (180), Expect = 4e-15
 Identities = 28/223 (12%), Positives = 52/223 (23%), Gaps = 59/223 (26%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
              P    + + T  +++L W  P       A    Y + Y S             + ST
Sbjct: 7   LDNPKDLEVSDPTETTLSLRWRRPV------AKFDRYRLTYVSPS--GKKNEMEIPVDST 58

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV 529
           S  +  L   T Y   + AE       P+ +   T         P+ +            
Sbjct: 59  SFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTV-----VGSPKGI------------ 101

Query: 530 VNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 589
                       +  ++W      V                            + R+++ 
Sbjct: 102 ----SFSDITENSATVSWTPPRSRV---------------------------DSYRVSYV 130

Query: 590 KYN---MATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEG 629
                    V    + T   +  L     Y   ++      E 
Sbjct: 131 PITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEES 173

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 63.6 bits (155), Expect = 7e-12
 Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 9/97 (9%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
            G P      + T  S T+ W  P       + V  Y V Y      T  VV     + T
Sbjct: 95  VGSPKGISFSDITENSATVSWTPPR------SRVDSYRVSYVPITGGTPNVVTVDG-SKT 147

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
              +  L P   Y   + +          P+S I +T
Sbjct: 148 RTKLVKLVPGVDYNVNIISVKGFEES--EPISGILKT 182

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 70.4 bits (173), Expect = 4e-15
 Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 9/88 (10%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK-MPTGRAKILDD---RSLQIENV 130
                D  VL G      C +     P + W   +    P  +  +  +     L + N+
Sbjct: 12  QEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNL 70

Query: 131 GPQDEGLYICDVENLVGSISLRASLTVH 158
            PQD G Y C      G  +  A+LTV 
Sbjct: 71  RPQDSGRYSCS----FGDQTTSATLTVT 94

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 13/79 (16%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
            L C       P V W    + +   PG+ Y    + QEG    L ++ ++ +D+G + C
Sbjct: 27  TLRCVLSSVAAP-VKWCYGNNVL--RPGDKY---SLRQEGAMLELVVRNLRPQDSGRYSC 80

Query: 316 SALSVAGSTTVRAFLQVRE 334
                 G  T  A L V  
Sbjct: 81  ----SFGDQTTSATLTVTA 95

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 77.4 bits (190), Expect = 5e-15
 Identities = 32/224 (14%), Positives = 60/224 (26%), Gaps = 41/224 (18%)

Query: 395 PGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSD 454
               AV  +P        P   +        + + W  P         ++ + V    + 
Sbjct: 385 KSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKK--YILEWCVLSDKAP 442

Query: 455 LQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVP 514
             T W          +    +L     Y+  V    + G G P  +    +        P
Sbjct: 443 CITDWQQE-DGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQ-----APP 496

Query: 515 QHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLR 574
                       +K   +R      + AV     + W  +P   +D     +    +  R
Sbjct: 497 ------------SKGPTVRTKKVGKNEAV-----LEWDQLP---VDVQNGFIRNYTIFYR 536

Query: 575 ELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
            +I              N+ +     + T YT++ L   T Y  
Sbjct: 537 TIIG--------NETAVNVDS-----SHTEYTLSSLTSDTLYMV 567

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 77.0 bits (189), Expect = 7e-15
 Identities = 38/332 (11%), Positives = 77/332 (23%), Gaps = 67/332 (20%)

Query: 256 RVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGF-FV 314
            +              + W      +          +      ++    +   +      
Sbjct: 26  VLKEKCMDYFHVNANYIVWKTNHFTI----PKEQYTIINRTASSVTFTDIASLNIQLTCN 81

Query: 315 CSALSVAGSTTVRAFLQVREF--------CVL-----------------PKGTFTL---- 345
                          +             C++                  +  FTL    
Sbjct: 82  ILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEW 141

Query: 346 -----GQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAV 400
                              +        +      A +  G+ +               +
Sbjct: 142 ATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDH------------I 189

Query: 401 HRMPDSGLFPGPPAAPVILNT--TRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTG 458
           +  P   + P PP    ++N+      + L W  P  +      ++ Y ++Y + D  T 
Sbjct: 190 NFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSV---IILKYNIQYRTKDASTW 246

Query: 459 WVVAAHRI--TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQH 516
             +       T +S TV DLKP T Y+F +R     G G  S  S     +      P  
Sbjct: 247 SQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYED-RPSK 305

Query: 517 LLDEARARLGTKVVNLRELIPTASTAVRITWE 548
                          +          V++ W+
Sbjct: 306 APSF--------WYKIDPSHTQGYRTVQLVWK 329

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 72.7 bits (178), Expect = 1e-13
 Identities = 17/95 (17%), Positives = 26/95 (27%), Gaps = 3/95 (3%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P            +    L W +          +  YT+ Y    +           + T
Sbjct: 496 PSKGPTVRTKKVGKNEAVLEWDQLPVDVQN-GFIRNYTIFY--RTIIGNETAVNVDSSHT 552

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
             T+S L  DT YM  + A    G       +  T
Sbjct: 553 EYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFTFTT 587

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 65.8 bits (160), Expect = 2e-11
 Identities = 30/251 (11%), Positives = 57/251 (22%), Gaps = 51/251 (20%)

Query: 376 ASSESGETSWSA-SLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPE 434
              E G+  WS  S               P                    +V L W +  
Sbjct: 278 CMKEDGKGYWSDWSEEASGITYEDR----PSKA-PSFWYKIDPSHTQGYRTVQLVW-KTL 331

Query: 435 PRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGL 494
           P       ++ Y V                 + +T +TV     +  Y+  +   N  G 
Sbjct: 332 PPFEANGKILDYEVTLTRWKSHLQNYT----VNATKLTV--NLTNDRYLATLTVRNLVGK 385

Query: 495 GIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSV 554
              + ++         +  P   L                        + + W     SV
Sbjct: 386 SDAAVLT--IPACDFQATHPVMDL----------------KAFPKDNMLWVEWTTPRESV 427

Query: 555 PQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFT 614
                          ++    L   A       W++       +     +Y   +L +  
Sbjct: 428 ------------KKYILEWCVLSDKAPCI--TDWQQE------DGTVHRTYLRGNLAESK 467

Query: 615 KYEFFLVPFFK 625
            Y   + P + 
Sbjct: 468 CYLITVTPVYA 478

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 64.6 bits (157), Expect = 4e-11
 Identities = 35/254 (13%), Positives = 71/254 (27%), Gaps = 54/254 (21%)

Query: 367 TDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSV 426
           + +   TC   +          +++              SGL P  P     +      +
Sbjct: 73  SLNIQLTCNILTFGQLEQNVYGITI-------------ISGLPPEKPKNLSCIVNEGKKM 119

Query: 427 TLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIV 486
              W               +T++   +  +     A     ++           +    V
Sbjct: 120 RCEWDGGRETHL----ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWV 175

Query: 487 RAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRIT 546
            AEN+ G      ++       +    P +L           V+N        S+ +++T
Sbjct: 176 EAENALGKVTSDHIN-FDPVYKVKPNPPHNL----------SVIN----SEELSSILKLT 220

Query: 547 WE--VSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTS 604
           W        +      + R +  +                  TW +        A+T +S
Sbjct: 221 WTNPSIKSVIILKYNIQYRTKDAS------------------TWSQIPPEDT--ASTRSS 260

Query: 605 YTVTHLRKFTKYEF 618
           +TV  L+ FT+Y F
Sbjct: 261 FTVQDLKPFTEYVF 274

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 10/98 (10%)

Query: 69  LIKPFPISEPSDATVLSGSVVEFVCRV-------GGDPLPTILWRRDDGKMPTGRAKILD 121
           L+ P     P    V   S    VC +              I+W+ +   +P  +  I++
Sbjct: 1   LLDPCGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIIN 60

Query: 122 DR--SLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
               S+   ++         C++            +T+
Sbjct: 61  RTASSVTFTDI-ASLNIQLTCNILTFGQLEQNVYGITI 97

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113

 Score = 70.2 bits (172), Expect = 6e-15
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 2/96 (2%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPE-PRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
             PP        +  ++ + W +   P+   +     YTV +  +++           T+
Sbjct: 9   MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRW-KTNIPANTKYKNANATT 67

Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
            S  V+ LKP+T Y F V           S  +  T
Sbjct: 68  LSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGT 103

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 69.7 bits (171), Expect = 7e-15
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 9/87 (10%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDD---RSLQIENV 130
             +P    V +GS   F           + W+R    +  + +  +  +    +L +  V
Sbjct: 12  SKKPRSVEVAAGSPAVFEAETERAG-VKVRWQRGGSDISASNKYGLATEGTRHTLTVREV 70

Query: 131 GPQDEGLYICDVENLVGSISLRASLTV 157
           GP D+G Y      + GS  ++  L V
Sbjct: 71  GPADQGSYAV----IAGSSKVKFDLKV 93

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 13/79 (16%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
                 E      V W + GS +     +A     +  EG   TL ++ V   D G +  
Sbjct: 27  VFEAETER-AGVKVRWQRGGSDI-----SASNKYGLATEGTRHTLTVREVGPADQGSYAV 80

Query: 316 SALSVAGSTTVRAFLQVRE 334
               +AGS+ V+  L+V E
Sbjct: 81  ----IAGSSKVKFDLKVIE 95

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 163 DFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 209
            F  +P+   VA+G  A+ E      +    + W++ G   D+ +S 
Sbjct: 10  AFSKKPRSVEVAAGSPAVFEAET--ERAGVKVRWQRGGS--DISASN 52

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 69.7 bits (171), Expect = 8e-15
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDD---RSLQIENV 130
           + + +D TV +     F C V  +   T  W ++  ++ P+ R  I        L I++V
Sbjct: 12  LQDIADLTVKAAEQAVFKCEVSDEK-VTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDV 70

Query: 131 GPQDEGLYICDVENLVGSISLRASLTV 157
            P+DEG Y    +    S+S +  L  
Sbjct: 71  RPEDEGDYTFVPDGYALSLSAK--LNF 95

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 11/79 (13%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
              C        +  W + G +V   P      + ++  G    L I  V+ ED G +  
Sbjct: 27  VFKCEVSDEK-VTGKWYKNGVEV--RPS---KRITISHVGRFHKLVIDDVRPEDEGDYTF 80

Query: 316 SALSVAGSTTVRAFLQVRE 334
                A S +  A L   E
Sbjct: 81  VPDGYALSLS--AKLNFLE 97

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 68.9 bits (169), Expect = 1e-14
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 8/87 (9%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK-MPTGRAKILDD---RSLQIENV 130
           ++  +D TV  G  +   C +  +      W ++      + R K++       L I N 
Sbjct: 11  LTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIHKLVIANA 68

Query: 131 GPQDEGLYICDVENLVGSISLRASLTV 157
             +DEG Y+   +    +++L A + V
Sbjct: 69  LTEDEGDYVFAPDA--YNVTLPAKVHV 93

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 12/79 (15%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
            L C  E S      WT+ G  V          L V Q+G    L I     ED G +V 
Sbjct: 26  CLKC--EISENIPGKWTKNGLPV-----QESDRLKVVQKGRIHKLVIANALTEDEGDYVF 78

Query: 316 SALSVAGSTTVRAFLQVRE 334
           +    A + T+ A + V  
Sbjct: 79  AP--DAYNVTLPAKVHVIS 95

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 74.9 bits (184), Expect = 1e-14
 Identities = 35/224 (15%), Positives = 64/224 (28%), Gaps = 58/224 (25%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
              P      + T  S T+ W  P       A + GY + +                +  
Sbjct: 186 LDSPTGIDFSDITANSFTVHWIAPR------ATITGYRIRHHPEHFSGRPREDRVPHSRN 239

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV 529
           SIT+++L P T Y+  + A N             T      S VP+ L          +V
Sbjct: 240 SITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTV-----SDVPRDL----------EV 284

Query: 530 VNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 589
           V          T++ I+W+    +V                              RIT+ 
Sbjct: 285 VAAT------PTSLLISWDAPAVTV---------------------------RYYRITYG 311

Query: 590 KYN----MATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEG 629
           +      +       + ++ T++ L+    Y   +       + 
Sbjct: 312 ETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDS 355

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 74.1 bits (182), Expect = 2e-14
 Identities = 24/220 (10%), Positives = 55/220 (25%), Gaps = 49/220 (22%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
             PP      N    ++ + W  P         +  + V Y     +      +   +  
Sbjct: 95  VPPPTDLRFTNIGPDTMRVTWAPPPS-----IDLTNFLVRYSPVKNEEDVAELSISPSDN 149

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV 529
           ++ +++L P T Y+  V +        P      T         P  +            
Sbjct: 150 AVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTG-----LDSPTGI------------ 192

Query: 530 VNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 589
               +     + +  + W     ++  + +                              
Sbjct: 193 ----DFSDITANSFTVHWIAPRATITGYRI-------------------RHHPEHFSGRP 229

Query: 590 KYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEG 629
           + +        +  S T+T+L   T+Y   +V      E 
Sbjct: 230 REDRVP----HSRNSITLTNLTPGTEYVVSIVALNGREES 265

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 72.9 bits (179), Expect = 5e-14
 Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 8/99 (8%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
              P    ++  T  S+ + W  P         V  Y + Y  +   +         + +
Sbjct: 276 SDVPRDLEVVAATPTSLLISWDAPA------VTVRYYRITYGETGGNSPVQEFTVPGSKS 329

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPS--PVSPITRT 506
           + T+S LKP   Y   V A    G    S  P+S   RT
Sbjct: 330 TATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYRT 368

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 69.1 bits (169), Expect = 9e-13
 Identities = 32/225 (14%), Positives = 63/225 (28%), Gaps = 55/225 (24%)

Query: 412 PPAAP----VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAH-RI 466
           P + P    +  N   G +T+ W            + GY +    ++ Q G  +      
Sbjct: 1   PLSPPTNLHLEANPDTGVLTVSWERSTT-----PDITGYRITTTPTNGQQGNSLEEVVHA 55

Query: 467 TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLG 526
             +S T  +L P   Y   V         +P   + I         VP            
Sbjct: 56  DQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPA-------VPP----------- 97

Query: 527 TKVVNLRELIPTASTAVRITWE-VSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVR 585
               +LR         +R+TW       +   L+                          
Sbjct: 98  --PTDLR-FTNIGPDTMRVTWAPPPSIDLTNFLVR-----------------------YS 131

Query: 586 ITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGA 630
               + ++A +  + +  +  +T+L   T+Y   +   ++  E  
Sbjct: 132 PVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHEST 176

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103

 Score = 69.0 bits (169), Expect = 1e-14
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 5/99 (5%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
              P    +++ T  S+ + W            V  Y + Y  +   +           +
Sbjct: 8   SSVPTKLEVVDATPTSLKISWDAYYSSWQ---NVKYYRITYGETGGDSPVQEFTVPGYYS 64

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPS--PVSPITRT 506
           + T+S LKP   Y   V A ++   G     P+S   RT
Sbjct: 65  TATISGLKPGVDYTITVYAYDTFFPGYEPNSPISINYRT 103

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 69.0 bits (169), Expect = 1e-14
 Identities = 17/89 (19%), Positives = 24/89 (26%), Gaps = 9/89 (10%)

Query: 75  ISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKM-PTGRAKILDD---RSLQIEN 129
                   VL G    F C +         +W      +  + R +         L +  
Sbjct: 12  TKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVRE 71

Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVH 158
             P D G  +  V  L       ASL V 
Sbjct: 72  AAPSDAGEVVFSVRGLTSK----ASLIVR 96

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 19/80 (23%), Positives = 26/80 (32%), Gaps = 13/80 (16%)

Query: 259 RLSC-FAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFV 314
              C  +  S      WT  G  V      +      T++G    L ++     DAG  V
Sbjct: 27  SFECVLSHESASDPAMWTVGGKTV-----GSSSRFQATRQGRKYILVVREAAPSDAGEVV 81

Query: 315 CSALSVAGSTTVRAFLQVRE 334
                     T +A L VRE
Sbjct: 82  F----SVRGLTSKASLIVRE 97

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 8/40 (20%), Positives = 11/40 (27%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 203
                K   V  GE+   EC            W   G+ +
Sbjct: 11  ITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTV 50

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 4/35 (11%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGP 397
           +   +D+G    +        +  ASL V  R GP
Sbjct: 71  EAAPSDAGEVVFSV----RGLTSKASLIVRERSGP 101

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 35/228 (15%), Positives = 60/228 (26%), Gaps = 61/228 (26%)

Query: 412 PPAAP----VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAH-RI 466
           P + P    +  N   G +T+ W            + GY +    ++ Q G  +      
Sbjct: 2   PLSPPTNLHLEANPDTGVLTVSWERSTT-----PDITGYRITTTPTNGQQGNSLEEVVHA 56

Query: 467 TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLG 526
             +S T  +L P   Y   V            P+S           VPQ           
Sbjct: 57  DQSSCTFDNLSPGLEYNVSVYTVKDDKES--VPISDTIIP-----EVPQ----------- 98

Query: 527 TKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRI 586
             + +L   +    +++ + W     S                               RI
Sbjct: 99  --LTDLS-FVDITDSSIGLRWTPLNSSTIIG--------------------------YRI 129

Query: 587 TWEKYN----MATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGA 630
           T         +      ++   YTVT L     Y+  ++      E A
Sbjct: 130 TVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESA 177

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 29/225 (12%), Positives = 61/225 (27%), Gaps = 56/225 (24%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
                    ++ T  S+ L W          + +IGY +   ++             +  
Sbjct: 96  VPQLTDLSFVDITDSSIGLRWTPLNS-----STIIGYRITVVAAGEGIPIFEDFVDSSVG 150

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV 529
             TV+ L+P   Y   V    + G   P+ ++  T         P  L            
Sbjct: 151 YYTVTGLEPGIDYDISVITLINGGESAPTTLTQQTAVPP-----PTDL------------ 193

Query: 530 VNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 589
                        +R+TW     + P                          T   + + 
Sbjct: 194 ----RFTNIGPDTMRVTW-----APPPS---------------------IDLTNFLVRYS 223

Query: 590 KY----NMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGA 630
                 ++A +  + +  +  +T+L   T+Y   +   ++  E  
Sbjct: 224 PVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHEST 268

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 70.6 bits (173), Expect = 3e-13
 Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 10/107 (9%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
              P      + T  S T+ W  P       A + GY + +                +  
Sbjct: 278 LDSPTGIDFSDITANSFTVHWIAPR------ATITGYRIRHHPEHFSGRPREDRVPHSRN 331

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQH 516
           SIT+++L P T Y+  + A N             T    +++    H
Sbjct: 332 SITLTNLTPGTEYVVSIVALNGREESPLLIGQQST----VSAHHHHH 374

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 70.6 bits (173), Expect = 4e-13
 Identities = 26/220 (11%), Positives = 54/220 (24%), Gaps = 49/220 (22%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
             PP      N    ++ + W  P         +  + V Y     +      +   +  
Sbjct: 187 VPPPTDLRFTNIGPDTMRVTWAPPPS-----IDLTNFLVRYSPVKNEEDVAELSISPSDN 241

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV 529
           ++ +++L P T Y+  V +        P      T         P  +            
Sbjct: 242 AVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTG-----LDSPTGI------------ 284

Query: 530 VNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 589
               +     + +  + W               RA +    +       +          
Sbjct: 285 ----DFSDITANSFTVHWI------------APRATITGYRIRHHPEHFSGRPREDRV-- 326

Query: 590 KYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEG 629
                      +  S T+T+L   T+Y   +V      E 
Sbjct: 327 ---------PHSRNSITLTNLTPGTEYVVSIVALNGREES 357

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 68.6 bits (168), Expect = 3e-14
 Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 10/101 (9%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK-MPTGRAKILDD---RSLQIENV 130
             +        G+     C +    +  + W++        GR  +  D     LQI ++
Sbjct: 12  TQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDL 69

Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDT 171
              D G Y C      G     A+LTV  L   F      +
Sbjct: 70  SVADAGEYSCM----CGQERTSATLTVRALPARFTEGSGPS 106

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 47.0 bits (112), Expect = 9e-07
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 14/79 (17%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
            L C  E S +  V W +    +        G   + Q+G    L+I  +   DAG + C
Sbjct: 27  TLQC--ELSKVAPVEWKKGPETL-----RDGGRYSLKQDGTRCELQIHDLSVADAGEYSC 79

Query: 316 SALSVAGSTTVRAFLQVRE 334
               + G     A L VR 
Sbjct: 80  ----MCGQERTSATLTVRA 94

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 3/39 (7%)

Query: 163 DFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 201
            F  + K    + G TA L+C   +      + WKK  +
Sbjct: 10  RFTQDLKTKEASEGATATLQC---ELSKVAPVEWKKGPE 45

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 68.1 bits (167), Expect = 3e-14
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 9/87 (10%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK-MPTGRAKILDD---RSLQIENV 130
           I    D  V  G  VE  C +     P + W +D      + +  ++ +     L I   
Sbjct: 12  IKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGA 70

Query: 131 GPQDEGLYICDVENLVGSISLRASLTV 157
             +D G Y C+VE    +    ASL V
Sbjct: 71  SLKDAGEYTCEVEASKST----ASLHV 93

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 13/79 (16%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
            L C    +  P V W ++   +       Y    V  EG    L I+G   +DAG + C
Sbjct: 27  ELRCELSRAGTP-VHWLKDRKAI--RKSQKY---DVVCEGTMAMLVIRGASLKDAGEYTC 80

Query: 316 SALSVAGSTTVRAFLQVRE 334
              +   +    A L V E
Sbjct: 81  EVEASKST----ASLHVEE 95

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 68.2 bits (166), Expect = 5e-14
 Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 14/103 (13%)

Query: 70  IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD--------------DGKMPTG 115
           I    +S      +  G  +   C    +    I +  +              D K  +G
Sbjct: 7   IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 66

Query: 116 RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
                   +L I+ V   D+GLY C   + + +      + VH
Sbjct: 67  SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 109

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 53.2 bits (127), Expect = 8e-09
 Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 8/84 (9%)

Query: 259 RLSCFAEGSPLPSVFWT--------QEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDA 310
            L+C A       + +         Q    V        G        TL I GV + D 
Sbjct: 27  VLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ 86

Query: 311 GFFVCSALSVAGSTTVRAFLQVRE 334
           G + C+A S   +     F++V E
Sbjct: 87  GLYTCAASSGLMTKKNSTFVRVHE 110

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 39.3 bits (91), Expect = 6e-04
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
            +  +D GLYTC ASS       S  + V  +P
Sbjct: 80  GVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 69.2 bits (169), Expect = 7e-14
 Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 18/155 (11%)

Query: 77  EPSDATVLSGSVVEFVCRV--GGDPLPTILWRRDDGK-----------MPTGRAKILDDR 123
           +        G  +          D +  + W R               + +G  +IL + 
Sbjct: 2   DSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG 61

Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLEC 183
            L+I+N+   D G Y   V +  G+  L  +L + +L        K         A L C
Sbjct: 62  DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMV----SKPMIYWECSNATLTC 117

Query: 184 GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
              +G  +  L   +  + +     K++      L
Sbjct: 118 EVLEG-TDVELKLYQGKEHLRSLRQKTMSYQWTNL 151

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 65.8 bits (160), Expect = 9e-13
 Identities = 22/162 (13%), Positives = 49/162 (30%), Gaps = 33/162 (20%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAY-----GHLHVTQEGTLRIQGVQKEDAGFF 313
            +  F     +  V W +  + V  F          G   +   G L+I+ + ++D+G +
Sbjct: 17  NIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTY 76

Query: 314 VCSALSVAGSTTVRAFLQVREFCVLPK-------GTFTL-----------------GQPN 349
             +  S  G+  +   L +R   ++ K          TL                  +  
Sbjct: 77  NVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHL 136

Query: 350 LATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSV 391
            +     +     +L       + C A +   + S    ++ 
Sbjct: 137 RSLRQKTMSYQWTNL----RAPFKCKAVNRVSQESEMEVVNC 174

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 43.8 bits (103), Expect = 4e-05
 Identities = 11/89 (12%), Positives = 20/89 (22%), Gaps = 9/89 (10%)

Query: 69  LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIE 128
           L     +S+P        S     C V       +   +    + + R          + 
Sbjct: 95  LRILEMVSKPM--IYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR-------QKTMS 145

Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTV 157
                    + C   N V   S    +  
Sbjct: 146 YQWTNLRAPFKCKAVNRVSQESEMEVVNC 174

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 67.4 bits (165), Expect = 7e-14
 Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 10/88 (11%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDD---RSLQIENV 130
                +     G+     C +       + W +    +    R  +  D     LQI  +
Sbjct: 23  TEGLRNEEATEGATAVLRCELSKMA--PVEWWKGHETLRDGDRHSLRQDGARCELQIRGL 80

Query: 131 GPQDEGLYICDVENLVGSISLRASLTVH 158
             +D G Y+C    + G     A LTV 
Sbjct: 81  VAEDAGEYLC----MCGKERTSAMLTVR 104

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 147 GSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 203
            S    A LTV  L   F    ++     G TA+L C   +      + W K  + +
Sbjct: 5   SSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRC---ELSKMAPVEWWKGHETL 58

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 14/79 (17%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
            L C  E S +  V W +    +            + Q+G    L+I+G+  EDAG ++C
Sbjct: 38  VLRC--ELSKMAPVEWWKGHETL-----RDGDRHSLRQDGARCELQIRGLVAEDAGEYLC 90

Query: 316 SALSVAGSTTVRAFLQVRE 334
               + G     A L VR 
Sbjct: 91  ----MCGKERTSAMLTVRA 105

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 71.8 bits (175), Expect = 8e-14
 Identities = 51/343 (14%), Positives = 98/343 (28%), Gaps = 66/343 (19%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
                       G++  L C   + +   T+HW           S+   + RR    L +
Sbjct: 9   QEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRR----LLL 64

Query: 224 RPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLM 283
           R +                                  SC+  G P  +V           
Sbjct: 65  RSV--------------------------QLHDSGNYSCYRAGRPAGTV----------- 87

Query: 284 FPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSALSVA-GSTTVRAFLQVREFCVLPKG 341
                  HL V       ++   +K      VC     +  S T +A L VR+F   P  
Sbjct: 88  -------HLLVDVPPEEPQLSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAE 140

Query: 342 TFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVH 401
            F               ++A    ++   + +   +S  G + +S + + +         
Sbjct: 141 DFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVG-SKFSKTQTFQGCGILQ--- 196

Query: 402 RMPDSGLFPGPPAAPVI--LNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGW 459
                   P PPA   +  +      +++ W +P          + + + Y +   +T +
Sbjct: 197 --------PDPPANITVTAVARNPRWLSVTWQDPHSWNSS-FYRLRFELRYRAERSKT-F 246

Query: 460 VVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP 502
                +       + D      ++  +RA+   G G  S  SP
Sbjct: 247 TTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSP 289

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 25/115 (21%), Positives = 36/115 (31%), Gaps = 9/115 (7%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCR-VGGDPLPTILWRRDDGKMPTGRAKIL-DDRSLQIE 128
            P         T L G  V   C  V  +   T+ W        +  ++     R L + 
Sbjct: 6   CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLR 65

Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLEC 183
           +V   D G Y C               TVHLL D    EP+ +       + + C
Sbjct: 66  SVQLHDSGNYSCYRAGRPAG-------TVHLLVDVPPEEPQLSCFRKSPLSNVVC 113

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 54.5 bits (130), Expect = 4e-08
 Identities = 33/264 (12%), Positives = 62/264 (23%), Gaps = 66/264 (25%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTT 422
            ++  DSG Y+C  +   G  + +  L V+  P    +                    + 
Sbjct: 66  SVQLHDSGNYSCYRA---GRPAGTVHLLVDVPPEEPQLSC---------------FRKSP 107

Query: 423 RGSVTLGWGEPEPRGGGVAPVIGYTVEYF---SSDLQTGWVVAAHRITSTSITVS---DL 476
             +V   WG                +      +S  +       +   S   +       
Sbjct: 108 LSNVVCEWGPRSTPS----LTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPE 163

Query: 477 KPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELI 536
              + Y+  +   +S G    S          L    P ++   A              +
Sbjct: 164 GDSSFYIVSMCVASSVG-SKFSKTQTFQGCGILQPDPPANITVTA--------------V 208

Query: 537 PTASTAVRITWE--VSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMA 594
                 + +TW+   SW S    L  E R R                     T+      
Sbjct: 209 ARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSK----------------TFT----- 247

Query: 595 TVMNAATTTSYTVTHLRKFTKYEF 618
           T M         +       ++  
Sbjct: 248 TWMVKDLQHHCVIHDAWSGLRHVV 271

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 70.2 bits (172), Expect = 9e-14
 Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 8/102 (7%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYF-----SSDLQTGWVVAAH 464
           P  P        +     L W EP    G    +  Y V Y      +  +     V   
Sbjct: 99  PSEPGRLAFNVVSSTVTQLSWAEPAETNG---EITAYEVCYGLVNDDNRPIGPMKKVLVD 155

Query: 465 RITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
              +  + + +L+    Y + V+A N  G G          T
Sbjct: 156 NPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLAT 197

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 64.8 bits (158), Expect = 6e-12
 Identities = 31/211 (14%), Positives = 62/211 (29%), Gaps = 43/211 (20%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
            G P  P         +   W  P P G      +GY V+Y+     +            
Sbjct: 6   LGAPQNPNAKAAGSRKIHFNW-LP-PSG----KPMGYRVKYWIQG-DSESEAHLLDSKVP 58

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV 529
           S+ +++L P   Y   V A  + G G  S +    RT      VP             + 
Sbjct: 59  SVELTNLYPYCDYEMKVCAYGAQGEGPYSSLV-SCRTH---QEVPS------------EP 102

Query: 530 VNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVV--NLRELIPTASTAVRIT 587
             L   + +++       ++SW    +            ++    +   +          
Sbjct: 103 GRLAFNVVSSTVT-----QLSWAEPAET---------NGEITAYEVCYGLVNDDNRPIGP 148

Query: 588 WEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
            +K     +++        + +LR+   Y +
Sbjct: 149 MKK----VLVDNPKNRMLLIENLRESQPYRY 175

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 9/87 (10%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDD---RSLQIENV 130
                   V  G    F   +  +P     W+     +  +   +I++D     L + N 
Sbjct: 9   EKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNC 67

Query: 131 GPQDEGLYICDVENLVGSISLRASLTV 157
                G       N   +    A+L V
Sbjct: 68  QLGMTGEVSFQAANTKSA----ANLKV 90

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 14/79 (17%), Positives = 23/79 (29%), Gaps = 13/79 (16%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
                    P     W  +G  +      A     + ++G    L +   Q    G    
Sbjct: 24  HFEIEL-SEPDVHGQWKLKGQPL-----AASPDCEIIEDGKKHILILHNCQLGMTGEVSF 77

Query: 316 SALSVAGSTTVRAFLQVRE 334
                A +T   A L+V+E
Sbjct: 78  ----QAANTKSAANLKVKE 92

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 2/38 (5%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 201
                    V  GETA  E      +P+    WK  GQ
Sbjct: 8   VEKPLYGVEVFVGETAHFEIEL--SEPDVHGQWKLKGQ 43

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 65.9 bits (161), Expect = 2e-13
 Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 9/94 (9%)

Query: 68  ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDD---R 123
            ++         +    +G+     C V       + W +D  K+  + + ++      R
Sbjct: 8   KVVFAKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGCTR 66

Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
            L ++  G  + G Y C+      S      L V
Sbjct: 67  RLVVQQAGQAEAGEYSCEAGGQQLS----FRLQV 96

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 13/79 (16%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
            LSC         V W ++G ++     ++   + V   G    L +Q   + +AG + C
Sbjct: 30  TLSCEV-AQAQTEVTWYKDGKKL-----SSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSC 83

Query: 316 SALSVAGSTTVRAFLQVRE 334
                AG   +   LQV  
Sbjct: 84  ----EAGGQQLSFRLQVAG 98

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 203
            +   ++ +  +G +A L C     Q +  + W K+G+ +
Sbjct: 14  EQPAHREVQAEAGASATLSC--EVAQAQTEVTWYKDGKKL 51

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.4 bits (175), Expect = 2e-13
 Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 77  EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRSLQIENVGPQ 133
           + S      G  +   C      +  +     + ++ +     +  + +  L  + V  +
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVE 311

Query: 134 DEGLYICDVENLVGSISLRASLTVH 158
           D G+Y C       + +L   L V+
Sbjct: 312 DGGVYTCYAMGETFNETLSVELKVY 336

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.9 bits (153), Expect = 8e-11
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319
           + C  +   +  V+ +    QVL     + G + V + G L  + VQ ED G + C A+ 
Sbjct: 266 IRCDTKQQGMTKVWVSPSNEQVL--SQGSNGSVSV-RNGDLFFKKVQVEDGGVYTCYAMG 322

Query: 320 VAGSTTVRAFLQVREFCVLPKGT 342
              + T+   L+V  F +     
Sbjct: 323 ETFNETLSVELKVYNFTLHGHHD 345

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPP 413
            ++  D G+YTC A  E+   + S  L V      H  H   ++   P   
Sbjct: 307 KVQVEDGGVYTCYAMGETFNETLSVELKVYNFT-LHGHHDTLNAAADPWSH 356

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98

 Score = 65.5 bits (160), Expect = 2e-13
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 6/94 (6%)

Query: 411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTS 470
             P    + N T  S+T+ W  P       A + GY + Y  S+            +STS
Sbjct: 3   DAPTDLQVTNVTDTSITVSWTPPS------ATITGYRITYTPSNGPGEPKELTVPPSSTS 56

Query: 471 ITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
           +T++ L P   Y+  V A   +    P   +  T
Sbjct: 57  VTITGLTPGVEYVVSVYALKDNQESPPLVGTQTT 90

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121

 Score = 66.5 bits (162), Expect = 2e-13
 Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 8/99 (8%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
              P    ++  T  S+ + W  P         V  Y + Y  +   +         + +
Sbjct: 29  SDVPTKLEVVAATPTSLLISWDAPA------VTVRYYRITYGETGGNSPVQEFTVPGSKS 82

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPS--PVSPITRT 506
           + T+S LKP   Y   V A     L +    P+S   RT
Sbjct: 83  TATISGLKPGVDYTITVYAVTGLRLMLAGSKPISINYRT 121

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 22/91 (24%), Positives = 29/91 (31%), Gaps = 11/91 (12%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD---GKMPTGRAKILDD---RSLQIE 128
             +  D T   G  VE  C V  D    + W ++       P  R +I  +     L IE
Sbjct: 11  TKQLEDTTAYCGERVELECEVSEDD-ANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIE 69

Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVHL 159
                D   Y         S    A L+V L
Sbjct: 70  GATKADAAEYSVMTTGGQSS----AKLSVDL 96

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 11/79 (13%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
            L C        +V W + G +++  P + Y    +  EG    L I+G  K DA  +  
Sbjct: 26  ELECEVSE-DDANVKWFKNGEEIIPGPKSRY---RIRVEGKKHILIIEGATKADAAEYSV 81

Query: 316 SALSVAGSTTVRAFLQVRE 334
               +       A L V  
Sbjct: 82  ----MTTGGQSSAKLSVDL 96

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 209
              + +DT    GE   LEC     + +  + W KNG+ I      
Sbjct: 10  VTKQLEDTTAYCGERVELECEV--SEDDANVKWFKNGEEIIPGPKS 53

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 69.9 bits (170), Expect = 3e-13
 Identities = 47/294 (15%), Positives = 80/294 (27%), Gaps = 50/294 (17%)

Query: 77  EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEG 136
            PS   +  G  V   C    D    +       K         + +  ++ NV  Q++ 
Sbjct: 5   SPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPK-KELLLPGNNRKVYELSNV--QEDS 61

Query: 137 LYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP--TL 194
             +C      G  + +  LTV+   +     P  +    G+   L C    G P    T+
Sbjct: 62  QPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTV 121

Query: 195 HWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIG-------RKMA 247
              +  + +  E +   + +  T   L  R  +      R  L+ R  G           
Sbjct: 122 VLLRGEKELKREPAVG-EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPY 180

Query: 248 SLLIWNHPRVN---------------RLSCFAEGSPLPS--VFWTQEGSQVL-------- 282
            L  +  P                   + C  +G    S        G Q L        
Sbjct: 181 QLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGN 240

Query: 283 -MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREF 335
             F   A   +    EGT R+            C+ +    S      + +  F
Sbjct: 241 DSFSAKASVSVTAEDEGTQRL-----------TCAVILGNQSQETLQTVTIYSF 283

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score = 65.6 bits (160), Expect = 3e-13
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 6/99 (6%)

Query: 411 GPPAAPVILNTTRGS---VTLGWGEPEPRGGGVAPVIGYTVEY--FSSDLQTGWVVAAHR 465
           GP A P I  T   +   + L W           P+ G+ + Y    SD  + +      
Sbjct: 7   GPVAGPYITFTDAVNETTIMLKWMYIPASNNN-TPIHGFYIYYRPTDSDNDSDYKKDMVE 65

Query: 466 ITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
                 ++S L+P+TSY   ++  N  G    S V    
Sbjct: 66  GDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICE 104

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 64.7 bits (158), Expect = 4e-13
 Identities = 17/94 (18%), Positives = 27/94 (28%), Gaps = 13/94 (13%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD-----GKMPTGRAKILDD---R 123
              ++   D  V  G  VE    V  +    ++W ++            R +   D    
Sbjct: 9   VLIVTPLEDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67

Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
            L   +V  +D G Y              A L V
Sbjct: 68  ILIFSDVVQEDRGRYQVITNGGQCE----AELIV 97

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 9/79 (11%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
            ++          V W + G ++              ++G    L    V +ED G +  
Sbjct: 27  EMAVEV-SEEGAQVMWMKNGVELTREDSFK-ARYRFKKDGKRHILIFSDVVQEDRGRYQV 84

Query: 316 SALSVAGSTTVRAFLQVRE 334
               +       A L V E
Sbjct: 85  ----ITNGGQCEAELIVEE 99

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 67.4 bits (164), Expect = 4e-13
 Identities = 33/183 (18%), Positives = 52/183 (28%), Gaps = 10/183 (5%)

Query: 71  KPFPIS-EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIEN 129
           +PF    +P  A V  G  +   C                 +  T R   L   + Q+ +
Sbjct: 1   EPFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRG--LRWLARQLVD 58

Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQ 189
           +  + E   +C       ++  R  +      D     P       GE   L C  P   
Sbjct: 59  I-REPETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAG 117

Query: 190 PEP--TLHWKKNGQFID----LESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIG 243
           P    TL   +  Q +              +  T   L  R  +      RA L+ R  G
Sbjct: 118 PRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRPHG 177

Query: 244 RKM 246
             +
Sbjct: 178 LGL 180

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 64.3 bits (157), Expect = 7e-13
 Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 9/86 (10%)

Query: 77  EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK-MPTGRAKILDD---RSLQIENVGP 132
           +    T  +   V   C +         W +D  K   +    +  D     L +     
Sbjct: 16  DKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKV 74

Query: 133 QDEGLYICDVENLVGSISLRASLTVH 158
           QD G + C  E +         +TV 
Sbjct: 75  QDSGEFECRTEGVSAF----FGVTVQ 96

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 13/79 (16%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
            L+C           W ++G +V          L V  +G    L +   + +D+G F C
Sbjct: 29  VLTCEL-SRVDFPATWYKDGQKV-----EESELLVVKMDGRKHRLILPEAKVQDSGEFEC 82

Query: 316 SALSVAGSTTVRAFLQVRE 334
                    +    + V++
Sbjct: 83  ----RTEGVSAFFGVTVQD 97

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 64.9 bits (158), Expect = 7e-13
 Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 12/96 (12%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKM---PTGRAKILDDR------- 123
           IS       L G   +  C +   P P  I W   +  +    +GR  +           
Sbjct: 17  ISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVIS 76

Query: 124 SLQIENVGPQDEG-LYICDVENLVGSISLRASLTVH 158
           +L I N+   D   +Y C   N  GS +    L   
Sbjct: 77  TLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ 112

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 259 RLSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEG----TLRIQGVQKED-AGF 312
           ++ CF   +P P  + W+ + + +       Y    ++ E     TL I  + + D    
Sbjct: 32  QIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTI 91

Query: 313 FVCSALSVAGSTTVRAFLQVR 333
           + C+A +  GS T    L+ +
Sbjct: 92  YNCTAWNSFGSDTEIIRLKEQ 112

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 4/63 (6%)

Query: 147 GSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFIDL 205
           GS     +LTV+       +  +      GE   ++C   +  P P  + W      ++ 
Sbjct: 1   GSSGSSGTLTVNG-PPIISS-TQTQHALHGEKGQIKC-FIRSTPPPDRIAWSWKENVLES 57

Query: 206 ESS 208
            +S
Sbjct: 58  GTS 60

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 66.5 bits (162), Expect = 8e-13
 Identities = 22/163 (13%), Positives = 43/163 (26%), Gaps = 21/163 (12%)

Query: 76  SEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPT-------------------G 115
             P     + G  V        G+ +  I W  ++  +                      
Sbjct: 3   LTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGK 62

Query: 116 RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLT-VHLLRDDFRAEPKDTRVA 174
           R       SLQ+ N+  +D G Y   +     +     +L  +  LR+            
Sbjct: 63  RLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQN 122

Query: 175 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRT 217
                 L C         +  W+  G  +  + + ++    R 
Sbjct: 123 MTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRI 165

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 50.0 bits (119), Expect = 3e-07
 Identities = 24/186 (12%), Positives = 48/186 (25%), Gaps = 40/186 (21%)

Query: 235 ANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV 294
             L   +   +  + + W     +        +  P +  T                L+ 
Sbjct: 16  VTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTN---------PKQGKRLNF 66

Query: 295 TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGN 354
           TQ  +L++  ++ ED G +     +   +      L++     L     T          
Sbjct: 67  TQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQ--LRNIQVTNHSQLFQNMT 124

Query: 355 SDLR-----------------------------RIACDLRETDSGLYTCTASSESGETSW 385
            +L                               ++ D R +    YTC A +     S+
Sbjct: 125 CELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRISSEQDYTCIAENAVSNLSF 184

Query: 386 SASLSV 391
           S S   
Sbjct: 185 SVSAQK 190

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 15/96 (15%), Positives = 24/96 (25%), Gaps = 8/96 (8%)

Query: 63  LIAKEALIKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILD 121
           L     L     ++  S         +   C V   D   +  W      + +       
Sbjct: 102 LRILRQLRNIQ-VTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQP----- 155

Query: 122 DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
                  +     E  Y C  EN V ++S   S   
Sbjct: 156 -NLTVSWDPRISSEQDYTCIAENAVSNLSFSVSAQK 190

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 64.0 bits (156), Expect = 1e-12
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 76  SEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK-MPTGRAKILDD---RSLQIENVG 131
           S       +    V   C +   P   + W +D  + + +    +  +   R L +  V 
Sbjct: 18  SGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQ 76

Query: 132 PQDEGLYICDVENLVGSISLRASLTVH 158
            +D G Y+C+    +   S   ++TV 
Sbjct: 77  LEDSGEYLCE----IDDESASFTVTVT 99

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 13/79 (16%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
            L+C     P   V WT++G +V      A     + +E     L +  VQ ED+G ++C
Sbjct: 32  VLTCEL-CRPWAEVRWTKDGEEV--VESPAL---LLQKEDTVRRLVLPAVQLEDSGEYLC 85

Query: 316 SALSVAGSTTVRAFLQVRE 334
                    +    + V E
Sbjct: 86  ----EIDDESASFTVTVTE 100

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 5/45 (11%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSG 407
            ++  DSG Y C       + S S +++V   P    ++  P SG
Sbjct: 74  AVQLEDSGEYLCEI----DDESASFTVTVTEPP-VRIIYSGPSSG 113

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98

 Score = 63.2 bits (154), Expect = 1e-12
 Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 10/105 (9%)

Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSI 471
            P   V+   T  S+ L W  P+      A    + ++Y  S+     +      +  S 
Sbjct: 4   APKNLVVSEVTEDSLRLSWTAPD------AAFDSFMIQYQESEKVGEAINLTVPGSERSY 57

Query: 472 TVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQH 516
            ++ LKP T Y   +           +P+S    T G       H
Sbjct: 58  DLTGLKPGTEYTVSIYGVKGGHRS--NPLSAEFTTGGH--HHHHH 98

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 66.8 bits (162), Expect = 1e-12
 Identities = 31/179 (17%), Positives = 50/179 (27%), Gaps = 43/179 (24%)

Query: 75  ISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPT------------------- 114
           +S P    V+ G  V   C   G      + W   D                        
Sbjct: 4   LSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHD 63

Query: 115 -----GRAKILDDRSLQIENVGPQDEGLYICDVE-NLVGSISLRASLTVHLLRDDFRAEP 168
                   ++     L +      DE  Y+C V     G+    A L V        A+P
Sbjct: 64  TRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVF-------AKP 116

Query: 169 KDTRV----------ASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRT 217
           + T V                +  C    G P P + W +NGQ +++    + +    +
Sbjct: 117 EATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTS 175

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 63.3 bits (154), Expect = 1e-12
 Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 14/99 (14%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT-GRAKILDDR------- 123
                   + TV+ G      CRV  +   ++ W     +       K L D        
Sbjct: 7   QGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA 66

Query: 124 -----SLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
                S+ + +V   DEG Y C +   +   + +A LTV
Sbjct: 67  SWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTV 104

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 46.8 bits (111), Expect = 9e-07
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 8/82 (9%)

Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ-------EGTLRIQGVQKEDAGF 312
           L+C  + +   S+ W+    Q L F        +  +       E ++ +  V   D G 
Sbjct: 26  LTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQ 85

Query: 313 FVCSALSVAGSTTVRAFLQVRE 334
           + CS L      T +A+L V  
Sbjct: 86  YTCS-LFTMPVKTSKAYLTVLG 106

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 8/98 (8%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
             PP+   + + T  S+ + W  P         V+ Y + Y  +         +     +
Sbjct: 8   RSPPSNLALASETPDSLQVSWTPPL------GRVLHYWLTYAPASGLGPEKSVSVPGARS 61

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTL 507
            +T+ DL+  T Y  +V A  + G      VS   +T 
Sbjct: 62  HVTLPDLQAATKYRVLVSAIYAAGRS--EAVSATGQTA 97

>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens} Length = 238

 Score = 66.1 bits (160), Expect = 3e-12
 Identities = 25/124 (20%), Positives = 38/124 (30%), Gaps = 12/124 (9%)

Query: 383 TSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAP 442
                   +        +       +   P          + +VT+ W EPE   G    
Sbjct: 124 DGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEG---- 179

Query: 443 VIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP 502
           + GY +       + G  VA      TS T   L   T Y F + A+ S+G    S    
Sbjct: 180 LEGYILY------KDGKKVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEV--SSKES 231

Query: 503 ITRT 506
           +T  
Sbjct: 232 LTLR 235

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 62.4 bits (152), Expect = 3e-12
 Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 9/90 (10%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDD---RSLQI 127
            F         V  G  V FV  +  DP   + W ++  ++ P+ +         R L I
Sbjct: 9   AFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFI 67

Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTV 157
            N    D+  Y        G       L V
Sbjct: 68  NNCQMTDDSEYYVT----AGDEKCSTELFV 93

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 47.8 bits (114), Expect = 4e-07
 Identities = 15/79 (18%), Positives = 20/79 (25%), Gaps = 13/79 (16%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
           R        P   V W + G ++               +G    L I   Q  D   +  
Sbjct: 27  RFVVEL-ADPKLEVKWYKNGQEI-----RPSTKYIFEHKGCQRILFINNCQMTDDSEYYV 80

Query: 316 SALSVAGSTTVRAFLQVRE 334
                AG       L VR 
Sbjct: 81  ----TAGDEKCSTELFVRS 95

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 65.3 bits (158), Expect = 3e-12
 Identities = 25/167 (14%), Positives = 46/167 (27%), Gaps = 12/167 (7%)

Query: 71  KPFPI-SEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDDRS-LQI 127
           KP  +        V  G+  +  CR+   D   ++ WR  D     G  +    RS L +
Sbjct: 6   KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLD--TSLGAVQSDTGRSVLTV 63

Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLEC---- 183
            N      G  +C       +      L V+   +     P            + C    
Sbjct: 64  RNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPA---ALVPGDPEVACTAHK 120

Query: 184 GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNV 230
             P      +      GQ ++   +   ++            + + V
Sbjct: 121 VTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRV 167

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97

 Score = 62.0 bits (151), Expect = 3e-12
 Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 8/99 (8%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
              P    ++  T  S+ + W          + V  Y + Y  +   +         +S+
Sbjct: 5   SSVPTKLEVVAATPTSLLISWDASS------SSVSYYRITYGETGGNSPVQEFTVPGSSS 58

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPS--PVSPITRT 506
           + T+S L P   Y   V A  S+     S  P S   RT
Sbjct: 59  TATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSINYRT 97

>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95

 Score = 62.1 bits (151), Expect = 3e-12
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 8/97 (8%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
                +  +   T  S  + W            V G+ VEY  S+            T+T
Sbjct: 6   HLVATSESVTEITASSFVVSWVSAS------DTVSGFRVEYELSEEGDEPQYLDLPSTAT 59

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
           S+ + DL P   Y+  V   +  G    S +   ++T
Sbjct: 60  SVNIPDLLPGRKYIVNVYQISEDGEQ--SLILSTSQT 94

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score = 61.9 bits (151), Expect = 3e-12
 Identities = 33/102 (32%), Positives = 42/102 (41%), Gaps = 13/102 (12%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEP---EPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI 466
            G P    +   T  +  L W  P   E  G     +I YTV +   + Q          
Sbjct: 9   SGFPQNLHVTGLTTSTTELAWDPPVLAERNG----RIISYTVVFRDINSQQELQNIT--- 61

Query: 467 TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT-RTL 507
           T T  T++ LKPDT+Y   VRA  S G G  SP   I  RT+
Sbjct: 62  TDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSP--SIQSRTM 101

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 62.1 bits (151), Expect = 4e-12
 Identities = 26/106 (24%), Positives = 35/106 (33%), Gaps = 10/106 (9%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
              P        T  +  L W EP           GY + + +   QT  ++       T
Sbjct: 8   LEAPRDLEAKEVTPRTALLTWTEPP------VRPAGYLLSFHTPGGQTQEILLPG--GIT 59

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQ 515
           S  +  L P TSY   ++A     L    PVS    T GL    P 
Sbjct: 60  SHQLLGLFPSTSYNARLQAMWGQSLL--PPVSTSFTTGGLRISGPS 103

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94

 Score = 61.7 bits (150), Expect = 4e-12
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 6/93 (6%)

Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSI 471
            P      +    S+ + W  P+        V  Y V Y S +     +  A      + 
Sbjct: 4   RPKGLAFTDVDVDSIKIAWESPQ------GQVSRYRVTYSSPEDGIHELFPAPDGEEDTA 57

Query: 472 TVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
            +  L+P + Y   V A +      P   +  T
Sbjct: 58  ELQGLRPGSEYTVSVVALHDDMESQPLIGTQST 90

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 62.5 bits (152), Expect = 4e-12
 Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 10/91 (10%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG--------KMPTGRAKILDDRSLQ 126
           +    +  +     +E    V G+P PT+ W  +           +   +   + +  L 
Sbjct: 11  VVSLEEPELRLEHCIE--FVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLL 68

Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTV 157
                  + G Y    +N +G+ +   +   
Sbjct: 69  FNKPTHYNNGNYTLIAKNPLGTANQTINGHF 99

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 54.1 bits (130), Expect = 3e-09
 Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 8/80 (10%)

Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE-----GTLRIQGVQKEDAGFFV 314
           +     G+P P++ W   G  +     +   H+   QE     G L        + G + 
Sbjct: 25  IEFVVRGNPPPTLHWLHNGQPL---RESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT 81

Query: 315 CSALSVAGSTTVRAFLQVRE 334
             A +  G+          +
Sbjct: 82  LIAKNPLGTANQTINGHFLK 101

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 7/51 (13%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPP 413
                ++G YT  A +  G  + + +      P        P   + P PP
Sbjct: 71  KPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPF-------PVDEVSPTPP 114

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108

 Score = 61.7 bits (150), Expect = 6e-12
 Identities = 18/98 (18%), Positives = 27/98 (27%), Gaps = 7/98 (7%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
             PP      + +  +  + W           PV    V Y SS+        A    +T
Sbjct: 8   LAPPRHLGFSDVSHDAARVFWEGAPR------PVRLVRVTYVSSEGGHSGQTEAPG-NAT 60

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTL 507
           S  +  L   T+Y   V      G          T+  
Sbjct: 61  SAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKA 98

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104

 Score = 61.3 bits (149), Expect = 6e-12
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 6/95 (6%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
              P+   + + T  +  + W  P        PV G+ + Y   D+              
Sbjct: 3   LDAPSQIEVKDVTDTTALITWMPPS------QPVDGFELTYGIKDVPGDRTTIDLTEDEN 56

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
             ++ +LKPDT Y   + +        P+  +  T
Sbjct: 57  QYSIGNLKPDTEYEVSLISRRGDMSSNPAKETFTT 91

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 64.4 bits (156), Expect = 7e-12
 Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 14/103 (13%)

Query: 70  IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWR--------------RDDGKMPTG 115
           I    +S      +  G  +   C    +    I +                 D K  +G
Sbjct: 104 IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 163

Query: 116 RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
                   +L I+ V   D+GLY C   + + +      + VH
Sbjct: 164 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 206

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 62.9 bits (152), Expect = 2e-11
 Identities = 18/156 (11%), Positives = 42/156 (26%), Gaps = 11/156 (7%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDD--RSLQI 127
                      T      V   C     +   ++  R  + +      +I  D  +   I
Sbjct: 9   SVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTI 68

Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFR---AEPKDTRVASGETALLEC- 183
            +      G+  C+ +    S      + V +    +    +      ++ GE  +L C 
Sbjct: 69  PSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCT 128

Query: 184 --GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRT 217
                        +W+        +   + DL  ++
Sbjct: 129 ARTEL--NVGIDFNWEYPSSKHQHKKLVNRDLKTQS 162

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 59.8 bits (144), Expect = 3e-10
 Identities = 27/193 (13%), Positives = 54/193 (27%), Gaps = 25/193 (12%)

Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPL 226
                     +T ++ C         +L  +   +    + ++    S++          
Sbjct: 15  GVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMIS 74

Query: 227 YWNVARPRANLNPRYIGRKMASLLIWNHPRVN-----------------RLSCFAEGSPL 269
           Y  +    A +N       M  +++  +   +                  L+C A     
Sbjct: 75  YAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELN 134

Query: 270 PSVFWT--------QEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 321
             + +         Q    V        G        TL I GV + D G + C+A S  
Sbjct: 135 VGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 194

Query: 322 GSTTVRAFLQVRE 334
            +     F++V E
Sbjct: 195 MTKKNSTFVRVHE 207

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 26/184 (14%), Positives = 41/184 (22%), Gaps = 51/184 (27%)

Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319
           + C        +V       +    P          +     I       AG   C A  
Sbjct: 29  IPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKK--GFTIPSYMISYAGMVFCEAKI 85

Query: 320 VAGSTTVRAFLQVREFCVLPK--------------GTFTL-----GQPNL---------- 350
              S     ++ V     +                    L      + N+          
Sbjct: 86  NDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPS 145

Query: 351 --------------ATGNSDLRRIACDL-----RETDSGLYTCTASSESGETSWSASLSV 391
                             S++++    L       +D GLYTC ASS       S  + V
Sbjct: 146 SKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 205

Query: 392 EPRP 395
              P
Sbjct: 206 HEDP 209

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137

 Score = 62.3 bits (151), Expect = 7e-12
 Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 7/101 (6%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGG------VAPVIGYTVEYFSSDLQTGWVVAA 463
                 PV  +    +V L W  P     G      V  + GY V   SS  + G   + 
Sbjct: 18  LSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLI-SSTGKDGKYKSV 76

Query: 464 HRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
           +    T+IT++DLKP   Y   V+AE +   G PS     T
Sbjct: 77  YVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFT 117

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 61.0 bits (148), Expect = 1e-11
 Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 7/99 (7%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
             PP A  +   T  +V L W          A    Y V    +  +        ++   
Sbjct: 9   LPPPRALTLAAVTPRTVHLTWQPS-------AGATHYLVRCSPASPKGEEEEREVQVGRP 61

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLG 508
            + +  L+P   Y   V++           +   T T G
Sbjct: 62  EVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSG 100

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114

 Score = 60.7 bits (147), Expect = 1e-11
 Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 6/101 (5%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
              P    ++  T  S+ + W               Y + Y  +   +            
Sbjct: 4   SDVPRDLEVVAATPTSLLISWDSGR------GSYQYYRITYGETGGNSPVQEFTVPGPVH 57

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLN 510
           + T+S LKP   Y   V A   H      P +     + +N
Sbjct: 58  TATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISIN 98

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 10/90 (11%)

Query: 73  FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG--KMPTGRAKILDD---RSLQI 127
           F         V  G  +     +       + W ++    +M   +         R+L I
Sbjct: 18  FQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTI 76

Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTV 157
                 D+  Y C V     S      L V
Sbjct: 77  SQCSLADDAAYQCVVGGEKCS----TELFV 102

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 19/79 (24%), Positives = 25/79 (31%), Gaps = 12/79 (15%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
           RL+          V W + G Q +   G+ Y        G   TL I      D   + C
Sbjct: 35  RLTVELAD-HDAEVKWLKNG-QEIQMSGSKY---IFESIGAKRTLTISQCSLADDAAYQC 89

Query: 316 SALSVAGSTTVRAFLQVRE 334
               V G       L V+E
Sbjct: 90  ----VVGGEKCSTELFVKE 104

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 59.8 bits (145), Expect = 2e-11
 Identities = 17/96 (17%), Positives = 28/96 (29%), Gaps = 13/96 (13%)

Query: 73  FP--ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDR------ 123
           F   I+     T  S         V G+P P + W  +   +  +               
Sbjct: 3   FAPTITFLESPT--SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60

Query: 124 --SLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
              LQ++N    + G Y    +N  G    + S   
Sbjct: 61  HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 3/79 (3%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLM---FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 315
            +    +G+P P++ W   G+ +          +   H    G L++      + G +  
Sbjct: 20  CIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTL 79

Query: 316 SALSVAGSTTVRAFLQVRE 334
            A +  G    +       
Sbjct: 80  IAKNEYGKDEKQISAHFMG 98

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 9/34 (26%), Positives = 14/34 (41%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPG 396
           +    ++G YT  A +E G+     S      PG
Sbjct: 68  NPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG 101

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 4/95 (4%)

Query: 411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS-T 469
             P        +  ++ + W EPE   G    + GY V Y     Q       H +    
Sbjct: 20  SAPRDVQARMLSSTTILVQWKEPEEPNG---QIQGYRVYYTMDPTQHVNNWMKHNVADSQ 76

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
             T+ +L P  +Y   V A  S G G  S    + 
Sbjct: 77  ITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVI 111

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 65.7 bits (159), Expect = 3e-11
 Identities = 26/143 (18%), Positives = 39/143 (27%), Gaps = 18/143 (12%)

Query: 374 CTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEP 433
           C   +     S +A +S    P   A                          V L W EP
Sbjct: 767 CNQDTPEERCSVAAYVSARTMPEAKA----------DDIVGPVTHEIFENNVVHLMWQEP 816

Query: 434 EPRGGGVAPVIGYTVEYF--SSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENS 491
           +   G    ++ Y V Y     +         H        +  L P  +Y   +RA + 
Sbjct: 817 KEPNG---LIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSP-GNYSVRIRATSL 872

Query: 492 HGLGIPSPVSPITRTLGLNSLVP 514
            G G  +   P    +     VP
Sbjct: 873 AGNGSWTE--PTYFYVTDYLDVP 893

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 65.7 bits (159), Expect = 3e-11
 Identities = 31/260 (11%), Positives = 55/260 (21%), Gaps = 53/260 (20%)

Query: 372 YTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWG 431
               +       + S  + V+                 P  P  P+ ++ +   + L W 
Sbjct: 569 LVTFSDERRTYGAKSDIIYVQTDATN------------PSVPLDPISVSNSSSQIILKWK 616

Query: 432 EPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENS 491
            P    G    +  Y V +      +                    P  ++     +E+S
Sbjct: 617 PPSDPNG---NITHYLVFWERQAEDSEL------FELDYCLKGLKLPSRTWSPPFESEDS 667

Query: 492 HGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSW 551
                                  Q L                       ++ R T+E   
Sbjct: 668 QKHNQSEYEDSAGECCSCPKTDSQILK------------------ELEESSFRKTFEDYL 709

Query: 552 GSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLR 611
            +V        + R    V N                               S  ++ LR
Sbjct: 710 HNVVFVPRPSRKRRSLGDVGN--------------AGNNEEHRPFEKVVNKESLVISGLR 755

Query: 612 KFTKYEFFLVPFFKTVEGAR 631
            FT Y   L    +     R
Sbjct: 756 HFTGYRIELQACNQDTPEER 775

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 51.5 bits (122), Expect = 6e-07
 Identities = 23/177 (12%), Positives = 48/177 (27%), Gaps = 45/177 (25%)

Query: 399 AVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQT- 457
           A+    D             + T+   + L W    P       ++G+ + Y  +  Q  
Sbjct: 458 ALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFR--DLLGFMLFYKEAPYQNV 515

Query: 458 ------------GWVVA----------AHRITSTSITVSDLKPDTSYMFIVRAENSHGLG 495
                        W V                     +  LKP T Y   V+   +    
Sbjct: 516 TEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDE 575

Query: 496 IPS--PVSPIT--RTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 548
             +    S I   +T   ++  P            +  ++    +  +S+ + + W+
Sbjct: 576 RRTYGAKSDIIYVQT---DATNP------------SVPLDPI-SVSNSSSQIILKWK 616

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 48.8 bits (115), Expect = 5e-06
 Identities = 30/212 (14%), Positives = 58/212 (27%), Gaps = 27/212 (12%)

Query: 347 QPNLATGNSDLRRIACDLRETDSGLY---TCTASSESGETSWSASLSVEPRPGPHAVHRM 403
            PN   GN     +  + +  DS L+    C    +    +WS     E     +     
Sbjct: 620 DPN---GNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYE 676

Query: 404 PDSGLFPGPPAAP--VILNTTRGSVTLGWGEPEPR---GGGVAPVIGYTVEYFSSDLQTG 458
             +G     P     ++      S    + +           +       +  ++     
Sbjct: 677 DSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEE 736

Query: 459 WVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT--RTLGLNSLVPQH 516
                  +   S+ +S L+  T Y   ++A N         V+     RT          
Sbjct: 737 HRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSART---------- 786

Query: 517 LLDEARARLGTKVVNLRELIPTASTAVRITWE 548
            + EA+A      V         +  V + W+
Sbjct: 787 -MPEAKADDIVGPVT---HEIFENNVVHLMWQ 814

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 59.4 bits (144), Expect = 4e-11
 Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P  P     LN T G   L W  P        PV  Y ++  +              ++ 
Sbjct: 8   PDGPTQLRALNLTEGFAVLHWKPP------QNPVDTYDIQVTAPGAPPLQAETPG--SAV 59

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
              + DL   T+Y   VR      L  P+ ++  T
Sbjct: 60  DYPLHDLVLHTNYTATVRGLRGPNLTSPASITFTT 94

>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A {Clostridium thermocellum} Length = 103

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 12/97 (12%)

Query: 412 PPAAP----VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
            PA P     +L+++  +  L W               Y V   S+     +   A  IT
Sbjct: 4   APAFPTGLSAVLDSSGNTANLTWN-------AAPGANSYNV-KRSTKSGGPYTTIATNIT 55

Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
           ST+ T + +   T Y ++V A ++    + S  + + 
Sbjct: 56  STNYTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQ 92

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 60.8 bits (147), Expect = 1e-10
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 7/97 (7%)

Query: 410 PGPPAAPVILNT--TRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI- 466
           P PP    ++N+      + L W  P  +      ++ Y ++Y + D  T   +      
Sbjct: 104 PNPPHNLSVINSEELSSILKLTWTNPSIKSV---IILKYNIQYRTKDASTWSQIPPEDTA 160

Query: 467 -TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP 502
            T +S TV DLKP T Y+F +R     G G  S  S 
Sbjct: 161 STRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSE 197

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 38/211 (18%), Positives = 63/211 (29%), Gaps = 42/211 (19%)

Query: 412 PPAAPVILN---TTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
           PP  P  L+        +   W +             +T++   +         A R T 
Sbjct: 7   PPEKPKNLSCIVNEGKKMRCEW-DGGRETH---LETNFTLKSEWAT-HKFADCKAKRDTP 61

Query: 469 TSITV-SDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGT 527
           TS TV        +    V AEN+ G      ++       +    P +L          
Sbjct: 62  TSCTVDYSTVYFVNIEVWVEAENALGKVTSDHIN-FDPVYKVKPNPPHNL---------- 110

Query: 528 KVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRIT 587
            V+N        S+ +++TW          L    + R                     T
Sbjct: 111 SVIN----SEELSSILKLTWTNPSIKSVIILKYNIQYRTKDAS----------------T 150

Query: 588 WEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
           W +       +  T +S+TV  L+ FT+Y F
Sbjct: 151 WSQIPPEDTAS--TRSSFTVQDLKPFTEYVF 179

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 58.5 bits (141), Expect = 1e-10
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 14/96 (14%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT---------GRAKIL----D 121
            +     TV  G  +   C        ++ W    G              + ++L    +
Sbjct: 5   TNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSAN 64

Query: 122 DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
             S+ + NV  QDEG+Y C   +     +    + V
Sbjct: 65  QLSITVPNVTLQDEGVYKCLHYSD-SVSTKEVKVIV 99

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 48.8 bits (116), Expect = 3e-07
 Identities = 15/99 (15%), Positives = 26/99 (26%), Gaps = 11/99 (11%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGH-------LHVTQEGTLRIQGVQKEDAG 311
            L C        S+ W       +                 H   + ++ +  V  +D G
Sbjct: 20  TLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEG 79

Query: 312 FFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNL 350
            + C   S    +T    + V       KG F     + 
Sbjct: 80  VYKCLHYS-DSVSTKEVKVIVL---ATMKGEFCRYPSHW 114

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 60.4 bits (146), Expect = 2e-10
 Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 31/156 (19%)

Query: 73  FPISEPSDA-TVLSGSVVEFVCRVGGDPLP-----TILWRRDDGKMPT------------ 114
           F ++ P D   V  GS +   C+   +         + W  +D  +              
Sbjct: 2   FTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQH 61

Query: 115 ----GRAKILDDR------SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDF 164
                RA++L D+      +LQI +V  QD G+Y C +    G+   R ++ V+    + 
Sbjct: 62  SSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVN-APYNK 119

Query: 165 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNG 200
             +             L C   +G P+  + W  + 
Sbjct: 120 INQRILVVDPVTSEHELTCQ-AEGYPKAEVIWTSSD 154

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 58.5 bits (141), Expect = 8e-10
 Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 7/99 (7%)

Query: 67  EALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK-MPTGRAKILDDRSL 125
           +       I++         S  E  C+  G P   ++W   D + +          R  
Sbjct: 112 KVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREE 171

Query: 126 QIENVG------PQDEGLYICDVENLVGSISLRASLTVH 158
           ++ NV            ++ C    L    +  A L + 
Sbjct: 172 KLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIP 210

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 51.9 bits (124), Expect = 1e-07
 Identities = 39/219 (17%), Positives = 56/219 (25%), Gaps = 64/219 (29%)

Query: 168 PKDTRVAS-GETALLEC----GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLR 222
           PKD  V   G    +EC              ++W+   + I        DL         
Sbjct: 7   PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKV------- 59

Query: 223 VRPLYWNVARPRANLNPRYIGRKMASLLIWN----------------------------- 253
               Y    R RA L    +    A+L I +                             
Sbjct: 60  QHSSY----RQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNA 115

Query: 254 -----HPRVN---------RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 299
                + R+           L+C AEG P   V WT    QVL   G         +E  
Sbjct: 116 PYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVL--SGKTTTTNSKREEKL 173

Query: 300 LRIQG---VQKEDAGFFVCSALSVAGSTTVRAFLQVREF 335
             +     +       F C+   +       A L + E 
Sbjct: 174 FNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPEL 212

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 46.9 bits (111), Expect = 6e-06
 Identities = 26/197 (13%), Positives = 46/197 (23%), Gaps = 59/197 (29%)

Query: 260 LSCFAEGSPLPS-----VFWTQEGSQVLMFPGNAYGHLHVTQE----------------G 298
           + C              V+W  E   ++ F                              
Sbjct: 21  IECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNA 80

Query: 299 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPK----------GTFTL--- 345
            L+I  V+ +DAG + C   S  G+   R  ++V                      L   
Sbjct: 81  ALQITDVKLQDAGVYRCMI-SYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQ 139

Query: 346 ---------------GQPNLATGNSDLRR---------IACDLRETDSGLYTCTASSESG 381
                           Q       +   +             +  T + ++ CT      
Sbjct: 140 AEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDP 199

Query: 382 ETSWSASLSVEPRPGPH 398
           E + +A L +   P  H
Sbjct: 200 EENHTAELVIPELPLAH 216

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 57.6 bits (139), Expect = 2e-10
 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 17/114 (14%)

Query: 518 LDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELI 577
             + +  LG  +V L   +    T V++TW V         +       G +V       
Sbjct: 7   GRQVQKELGDVLVRLHNPVVLTPTTVQVTWTVD---RQPQFIQ------GYRV----MYR 53

Query: 578 PTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGAR 631
            T+      +W+  +        T  S  + +L+K   YE  + P+F   +G  
Sbjct: 54  QTSGLQATSSWQNLDAKV----PTERSAVLVNLKKGVTYEIKVRPYFNEFQGMD 103

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 11/96 (11%)

Query: 416 PVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTG---W-VVAAHRITSTSI 471
           PV+L  T  +V + W            + GY V Y  +        W  + A   T  S 
Sbjct: 24  PVVLTPT--TVQVTWTVDRQPQ----FIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSA 77

Query: 472 TVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTL 507
            + +LK   +Y   VR   +   G+ S  S   RT 
Sbjct: 78  VLVNLKKGVTYEIKVRPYFNEFQGMDSE-SKTVRTT 112

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 412 PPAAPVILNTTRGS---VTLGWGEPEPRGGGVAPVIGYTVEY--FSSDLQTGWVVAAHRI 466
           P   P I  T   S   + L W    P      P+ G+ + Y    SD  + +       
Sbjct: 4   PITGPHIAYTEAVSDTQIMLKW-TYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEG 62

Query: 467 TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPV 500
           +     +  L+P+TSY   ++  N  G    S V
Sbjct: 63  SKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNV 96

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 59.5 bits (143), Expect = 2e-10
 Identities = 22/152 (14%), Positives = 37/152 (24%), Gaps = 35/152 (23%)

Query: 86  GSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENL 145
              V   C         I W +D   +        D +   + +      G+Y C     
Sbjct: 18  DGSVLLTC---DAEAKNITWFKDGKMIGFLTE---DKKKWNLGSNAKDPRGMYQCKGSQN 71

Query: 146 VGS--------ISLRASLTVHLLRDDF-----------------RAEPKDTRVA-SGETA 179
                       S   +      +DD                         +V+ SG T 
Sbjct: 72  KSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTV 131

Query: 180 LLECGPPKGQPEPTLHWKKNGQFIDLESSKSL 211
           +L C      P   + W+ N + I  +     
Sbjct: 132 ILTC---PQYPGSEILWQHNDKNIGGDEDDKN 160

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 55.7 bits (133), Expect = 5e-09
 Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 8/100 (8%)

Query: 65  AKEALIKPFPISEPSDATV-LSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKIL 120
                 +       +   V +SG+ V   C     P   ILW+ +D  +      +    
Sbjct: 106 DGSDGNEEMGGITQTPYKVSISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGS 163

Query: 121 DDRSLQIENVGP-QDEGLYICDVENLVGSI-SLRASLTVH 158
           D+  L ++     +  G Y+C          +    L   
Sbjct: 164 DEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR 203

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 44.1 bits (103), Expect = 4e-05
 Identities = 26/198 (13%), Positives = 52/198 (26%), Gaps = 52/198 (26%)

Query: 176 GETALLECGPPKGQPEPTLHWKKNGQFIDLESS--KSLDLSRRTLGWLRVRPLYWNVARP 233
             + LL C          + W K+G+ I   +   K  +L          R +Y      
Sbjct: 18  DGSVLLTCDAE----AKNITWFKDGKMIGFLTEDKKKWNLGSNAKD---PRGMYQCKGSQ 70

Query: 234 RANLNPRYIGR-------KMASLLIWNHPRVNR--------------------------- 259
             +   +   R       K  +    +  + +                            
Sbjct: 71  NKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTT 130

Query: 260 --LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGV-QKEDAGFFVCS 316
             L+C     P   + W      +    G+       + E  L ++   + E +G++VC 
Sbjct: 131 VILTCPQY--PGSEILWQHNDKNI---GGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 185

Query: 317 ALSVAGS-TTVRAFLQVR 333
                        +L+ R
Sbjct: 186 PRGSKPEDANFYLYLRAR 203

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303

 Score = 60.6 bits (146), Expect = 4e-10
 Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 7/101 (6%)

Query: 410 PGPPAAPVILNT--TRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI- 466
           P PP    ++N+      + L W  P  +      ++ Y ++Y + D  T   +      
Sbjct: 200 PNPPHNLSVINSEELSSILKLTWTNPSIKSV---IILKYNIQYRTKDASTWSQIPPEDTA 256

Query: 467 -TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
            T +S TV DLKP T Y+F +R     G G  S  S     
Sbjct: 257 STRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASG 297

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 34/268 (12%), Positives = 66/268 (24%), Gaps = 55/268 (20%)

Query: 353 GNSDLRRIACDLRETDSGLY-TCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPG 411
             +       D+   +  L        +  +  +  ++                 GL P 
Sbjct: 61  NRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIIS---------------GLPPE 105

Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSI 471
            P     +      +   W               +T++   +  +     A     ++  
Sbjct: 106 KPKNLSCIVNEGKKMRCEWDGGRETHLE----TNFTLKSEWATHKFADCKAKRDTPTSCT 161

Query: 472 TVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVN 531
                    +    V AEN+ G      V+           V  +              N
Sbjct: 162 VDYSTVYFVNIEVWVEAENALG-----KVTSDHINFDPVYKVKPN-----------PPHN 205

Query: 532 LR-ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEK 590
           L        S+ +++TW          L    + R                     TW +
Sbjct: 206 LSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDAS----------------TWSQ 249

Query: 591 YNMATVMNAATTTSYTVTHLRKFTKYEF 618
                  +  T +S+TV  L+ FT+Y F
Sbjct: 250 IPPEDTAS--TRSSFTVQDLKPFTEYVF 275

>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine receptor,interleukin-4, cytokine/receptor complex; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B* 3bpn_B* 3bpo_B* Length = 207

 Score = 58.5 bits (141), Expect = 5e-10
 Identities = 27/148 (18%), Positives = 44/148 (29%), Gaps = 5/148 (3%)

Query: 362 CDLRETDSGLYTC--TASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVIL 419
           C           C           +++  L    +       + P   + P  P    + 
Sbjct: 49  CIPENNGGAGCVCHLLMDDVVSADNYTLDLWAGQQLLWKGSFK-PSEHVKPRAPGNLTVH 107

Query: 420 NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVV--AAHRITSTSITVSDLK 477
                ++ L W  P P    +   + Y V  +S +    + +    +   S  I  S LK
Sbjct: 108 TNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLK 167

Query: 478 PDTSYMFIVRAENSHGLGIPSPVSPITR 505
              SY   VRA         S  SP T+
Sbjct: 168 SGISYRARVRAWAQAYNTTWSEWSPSTK 195

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 58.5 bits (141), Expect = 6e-10
 Identities = 31/144 (21%), Positives = 47/144 (32%), Gaps = 22/144 (15%)

Query: 82  TVLSGSVVEFVCR----VGGDPLPTILWRRDDG-----------KMP--TGRAKIL--DD 122
           T     V    C     V       I W+++               P    R      ++
Sbjct: 5   TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64

Query: 123 RSLQIENVGPQDEGLYICDVENLVGSISLR---ASLTVHLLRDDFRAEPKDTRVASGETA 179
            S+ I  + P DEG Y C V         R   A +T+ +  D       D  + +    
Sbjct: 65  LSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIR 124

Query: 180 LLECGPPKGQPEPTLHWKKNGQFI 203
            + C    G PEP L W +NG+ +
Sbjct: 125 RIICSTSGGFPEPHLSWLENGEEL 148

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 13/93 (13%), Positives = 32/93 (34%), Gaps = 7/93 (7%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDDRSLQIEN 129
             FP    SD  + + ++   +C   GG P P + W  +  ++      +  D   ++  
Sbjct: 106 ADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYA 165

Query: 130 VG------PQDEGLYICDVENLVGSISLRASLT 156
           V             ++C ++     ++   +  
Sbjct: 166 VSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNWN 198

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 56.5 bits (136), Expect = 6e-10
 Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 16/110 (14%)

Query: 93  CRVGGDPLPTILWRRDD-----------GKMPTGRAKILDDRSLQIENVGPQDEGLYICD 141
             V G P P++ W  +              +     + +    L++      + G Y   
Sbjct: 22  FSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLL 81

Query: 142 VENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPE 191
             N  G  S  AS+    + + F   P+D    +  T      P + + E
Sbjct: 82  AANPFGQAS--ASIMAAFMDNPFEFNPEDPIPDTNST---SGDPVEKKDE 126

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 5/80 (6%)

Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPG-----NAYGHLHVTQEGTLRIQGVQKEDAGFFV 314
           +    +G P PS+ W   GS +                   + G LR+      + G + 
Sbjct: 20  IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79

Query: 315 CSALSVAGSTTVRAFLQVRE 334
             A +  G  +        +
Sbjct: 80  LLAANPFGQASASIMAAFMD 99

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 12/68 (17%)

Query: 365 RETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRG 424
              ++G YT  A++  G+ S S   +    P                P       N+T G
Sbjct: 71  THVNNGNYTLLAANPFGQASASIMAAFMDNPFE------------FNPEDPIPDTNSTSG 118

Query: 425 SVTLGWGE 432
                  E
Sbjct: 119 DPVEKKDE 126

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192

 Score = 57.5 bits (138), Expect = 9e-10
 Identities = 25/183 (13%), Positives = 53/183 (28%), Gaps = 11/183 (6%)

Query: 71  KPFPIS-EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIEN 129
           K F +   P    V     +E  C    +            K+          +      
Sbjct: 1   KVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDE----QAQWKHYLV 56

Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQ 189
                + +  C         S+ ++++V+          + T VA G++  +EC  P  +
Sbjct: 57  SNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVE 116

Query: 190 PEP--TLHWKKNGQFID----LESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIG 243
           P    TL   +  + +      +++ +   +  T      R          A L+    G
Sbjct: 117 PLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRG 176

Query: 244 RKM 246
             +
Sbjct: 177 GNI 179

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313

 Score = 58.8 bits (141), Expect = 2e-09
 Identities = 15/116 (12%), Positives = 30/116 (25%), Gaps = 4/116 (3%)

Query: 388 SLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYT 447
           +                +  +      +P       G + L W   +P            
Sbjct: 187 TSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLH---INQKCE 243

Query: 448 VEYFSSDLQTGWVVAAH-RITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP 502
           + +     +  W +     + +    +  L P T+Y   +R       G  S  SP
Sbjct: 244 LRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSP 299

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313

 Score = 50.3 bits (119), Expect = 7e-07
 Identities = 35/263 (13%), Positives = 63/263 (23%), Gaps = 55/263 (20%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTT 422
            L  T + L        S +      L     P                      ++N T
Sbjct: 67  HLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLS--------------CLMNLT 112

Query: 423 RGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGW-------VVAAHRITSTSITVSD 475
             S+   W               +T++ F S              V     +  SI    
Sbjct: 113 TSSLICQWEPGPETH----LPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKH 168

Query: 476 LKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLREL 535
           L    +    V+AEN+ G  +   +      L    +V           +   +    E 
Sbjct: 169 LLLYQNMGIWVQAENALGTSMSPQL-----CLDPMDVVKLE------PPMLRTMDPSPEA 217

Query: 536 IPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMAT 595
            P  +  ++++WE     +  +   E R +                     +W       
Sbjct: 218 APPQAGCLQLSWEPWQPGLHINQKCELRHKPQRG---------------EASWALVGPLP 262

Query: 596 VMNAATTTSYTVTHLRKFTKYEF 618
           +        Y +  L   T Y  
Sbjct: 263 L----EALQYELCGLLPATAYTL 281

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 17/101 (16%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRDDGKMPT--------------GRAK 118
           I    + +   G  +   C +         + W + D  +                 R  
Sbjct: 7   IETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVA 66

Query: 119 ILDDRSLQIENVGPQDEGLYICDVENL-VGSISLRASLTVH 158
                 L ++++   D G Y C       G+ + R  L V 
Sbjct: 67  PGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVL 107

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 54.8 bits (131), Expect = 2e-09
 Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 16/100 (16%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPL---PTILW----RRDDGKMPTGRAKILDD----- 122
           + +P   +V +G     V +V G  L   PTI W      + G     R    +      
Sbjct: 16  LKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSAS 75

Query: 123 ----RSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
                 L I  V   D G Y  +V+      S   ++ V 
Sbjct: 76  NVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVE 115

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 6/95 (6%)

Query: 411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS-T 469
             P    +   +   +++ W            V  Y + Y+++  +          +   
Sbjct: 20  EAPTEVGVKVLSSSEISVHWEHV-LEK----IVESYQIRYWAAHDKEEAANRVQVTSQEY 74

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
           S  + +L PDT Y   V A NS G G PS +    
Sbjct: 75  SARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAF 109

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 57.4 bits (138), Expect = 2e-09
 Identities = 29/168 (17%), Positives = 46/168 (27%), Gaps = 33/168 (19%)

Query: 73  FPISEPSDA-TVLSGSVVEFVCRV---GGDPLPTILWRRDDGKMP--------------- 113
           F +  PS     + G   +  C +          + W     +                 
Sbjct: 5   FSVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQS 64

Query: 114 ---TGRAKILDDR------SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDF 164
               GR  IL D       +L+I NV   D G Y+C  ++            V L     
Sbjct: 65  APYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFY----EKALVELKVAAL 120

Query: 165 RAEPK-DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSL 211
            ++   D +        LEC      P+P + W  N           +
Sbjct: 121 GSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPV 168

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 54.5 bits (131), Expect = 3e-09
 Identities = 26/97 (26%), Positives = 34/97 (35%), Gaps = 7/97 (7%)

Query: 412 PPAAP--VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P   P  V+ N T   V L W E        + V GY V Y +S      V+     T+ 
Sbjct: 18  PSQPPGNVVWNATDTKVLLNW-EQVKAMENESEVTGYKVFYRTSSQNNVQVL----NTNK 72

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
           +     L     Y+  V+A    G G  S    I R 
Sbjct: 73  TSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRI 109

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 10/103 (9%)

Query: 411 GPPAAPVILNTTRGSVTLGWGEPEP-RGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT-- 467
           GPP    +   T  S+ + W  P+     GV  + GY + Y  +   +    +   +   
Sbjct: 17  GPPMDVTLQPVTSQSIQVTWKAPKKELQNGV--IRGYQIGYRENSPGSNGQYSIVEMKAT 74

Query: 468 --STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT-RTL 507
             S   T+ +LK    Y  +V+A N  G G  S    I   TL
Sbjct: 75  GDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSS--EINATTL 115

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 54.9 bits (131), Expect = 7e-09
 Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 39/171 (22%)

Query: 76  SEPSDATV-LSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGP-Q 133
           +E  +  V +SG+ VE  C +  D    + W ++  ++P        D+ L +++    +
Sbjct: 3   AENIEYKVSISGTSVELTCPL--DSDENLKWEKNGQELPQK-----HDKHLVLQDFSEVE 55

Query: 134 DEGLYICDVENLVGSISLRASLTVHLLRD------------------------DFRAEPK 169
           D G Y+C       +  L     V    D                          +   +
Sbjct: 56  DSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQ 115

Query: 170 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDL--ESSKSLDLSRRTL 218
                   + LL CG        T+ W K+G  I     +  + +L     
Sbjct: 116 VDGSRGDGSVLLTCGLTD----KTIKWLKDGSIISPLNATKNTWNLGNNAK 162

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 54.5 bits (131), Expect = 8e-09
 Identities = 23/164 (14%), Positives = 47/164 (28%), Gaps = 26/164 (15%)

Query: 73  FPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGK-----MPTGRAKILDDR--- 123
           F      +   ++GS V              + W     +      P G+  + +     
Sbjct: 1   FQDQSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKD 60

Query: 124 ---------SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVA 174
                    +L+I NV  +D G Y   + +       + ++ V+          K     
Sbjct: 61  RVDLDKTNGALRIYNVSKEDRGDYYMRMLH-ETEDQWKITMEVY------EMVSKPMIYW 113

Query: 175 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
               A L C   +G  +  L   +  + +     K++      L
Sbjct: 114 ECSNATLTCEVLEG-TDVELKLYQGKEHLRSLRQKTMSYQWTNL 156

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 53.6 bits (128), Expect = 8e-09
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 14/114 (12%)

Query: 57  SDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT-G 115
           +DD  K +A   L +       SD TV++G  V   C+V      ++ W     +    G
Sbjct: 24  TDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFG 83

Query: 116 RAKIL-DDR-----------SLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
             + L D+R           S+ I NV   DEG Y C +   +   + ++ +TV
Sbjct: 84  EKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSI-FTMPVRTAKSLVTV 136

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 39.4 bits (91), Expect = 8e-04
 Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGH------LHVTQ-EGTLRIQGVQKEDAG 311
            L C  +     S+ W+    Q L F             +  T  E ++ I  V   D G
Sbjct: 57  VLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEG 116

Query: 312 FFVCSALSVAGSTTVRAFLQV 332
            + CS  ++   T   + + V
Sbjct: 117 EYTCSIFTMPVRTAK-SLVTV 136

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132

 Score = 53.5 bits (129), Expect = 8e-09
 Identities = 18/97 (18%), Positives = 29/97 (29%), Gaps = 7/97 (7%)

Query: 411 GPPAAPVILNTTRGSVTLGWGEP---EPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
             P    +      S+ + W  P      G     + GY + Y  +  ++         T
Sbjct: 20  AAPQNLSLEVRNSKSIMIHWQPPAPATQNG----QITGYKIRYRKASRKSDVTETLVSGT 75

Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
             S  +  L   T Y F V A   +G G  +      
Sbjct: 76  QLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAE 112

>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1 Length = 88

 Score = 51.9 bits (125), Expect = 9e-09
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 12/84 (14%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P  P        T  S+TL W       G    V GY V   ++   T        +T T
Sbjct: 4   PTAPTNLASTAQTTSSITLSWTASTDNVG----VTGYDVYNGTALATT--------VTGT 51

Query: 470 SITVSDLKPDTSYMFIVRAENSHG 493
           + T+S L  DTSY F V+A+++ G
Sbjct: 52  TATISGLAADTSYTFTVKAKDAAG 75

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 5/97 (5%)

Query: 411 GPPAAPVILNTTRGSVTLGWGEPEP-RGGGVAPVIGYTVEY--FSSDLQTGWVVAAHRIT 467
            PP   + ++    +V + W  P      GV  +  Y+V Y     + +   VV      
Sbjct: 20  APPQKVMCVSMGSTTVRVSWVPPPADSRNGV--ITQYSVAYEAVDGEDRGRHVVDGISRE 77

Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
            +S  +  L+  T Y   VRA    G G  S    + 
Sbjct: 78  HSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVR 114

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215

 Score = 54.8 bits (131), Expect = 1e-08
 Identities = 19/106 (17%), Positives = 30/106 (28%), Gaps = 10/106 (9%)

Query: 404 PDSGLFPGPPAAPV------ILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQT 457
           P   +   PP          +++   G + L W   +P            + Y       
Sbjct: 103 PMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEY---MEQECELRYQPQLKGA 159

Query: 458 GWVVAAH-RITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP 502
            W +  H   +     +  L     Y   +R   S   G  SP SP
Sbjct: 160 NWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSP 205

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215

 Score = 46.4 bits (109), Expect = 8e-06
 Identities = 33/218 (15%), Positives = 58/218 (26%), Gaps = 45/218 (20%)

Query: 412 PPAAPVIL----NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGW-------V 460
           PPA+P  L    + T  S+   W               + ++ F S     +        
Sbjct: 4   PPASPSNLSCLMHLTTNSLVCQWEPGPETH----LPTSFILKSFRSRADCQYQGDTIPDC 59

Query: 461 VAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDE 520
           VA  R  + SI   +L         V+AEN  G    SP   +     +    P      
Sbjct: 60  VAKKRQNNCSIPRKNLLLYQYMAIWVQAENMLG-SSESPKLCLDPMDVVKLEPPMLQ--- 115

Query: 521 ARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTA 580
                   +    +++      + ++W+    S       E R +   K  N        
Sbjct: 116 -------ALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGAN-------- 160

Query: 581 STAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
                  W            +   + +  L +   Y  
Sbjct: 161 -------WTLVFHLPS----SKDQFELCGLHQAPVYTL 187

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 52.5 bits (126), Expect = 1e-08
 Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 12/101 (11%)

Query: 412 PPAAP----VILNTTRGSVTLGWGEP---EPRGGGVAPVIGYTVEYFSSDLQTGWVVAAH 464
           P  AP    V LN +  +V + W +P   +  G     ++GY + +          +   
Sbjct: 18  PSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDG----ELVGYRISHVWQSAGISKELLEE 73

Query: 465 RI-TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
                +   +S    + +    + A    G+G  S    I 
Sbjct: 74  VGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIF 114

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 9/97 (9%)

Query: 411 GPPAAPVILNTTRGSVTLGWGEP---EPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
            PP    +      S+ + W  P      G     + GY + +  +  +           
Sbjct: 30  APPQNVSLEVVNSRSIKVSWLPPPSGTQNG----FITGYKIRHRKTTRRGEMET--LEPN 83

Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
           +     + L+  + Y F V A   +G G PS      
Sbjct: 84  NLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAE 120

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 52.6 bits (126), Expect = 4e-08
 Identities = 25/155 (16%), Positives = 42/155 (27%), Gaps = 24/155 (15%)

Query: 78  PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAK--------------ILDDR 123
                 +    V F       PL  +LW++   K+                         
Sbjct: 2   SQQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60

Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLEC 183
           SL I N+   DE  Y  +  N+  ++     L V           K         A L C
Sbjct: 61  SLTIYNLTSSDEDEYEMESPNITDTMKFF--LYV------LEMVSKPMIYWECSNATLTC 112

Query: 184 GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
              +G  +  L   +  + +     K++      L
Sbjct: 113 EVLEG-TDVELKLYQGKEHLRSLRQKTMSYQWTNL 146

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 20/145 (13%), Positives = 39/145 (26%), Gaps = 31/145 (21%)

Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAY--------GHLHVTQEGTLRIQGVQKEDAG 311
                   PL  V W ++  +V     + +             T  G+L I  +   D  
Sbjct: 15  FHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDED 73

Query: 312 FFVCSALSVAGSTTVRAFLQVRE----------------FCVLPKGT---FTLGQPNLAT 352
            +   + ++  +      L V E                 C + +GT     L Q     
Sbjct: 74  EYEMESPNITDTMKFF--LYVLEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHL 131

Query: 353 GNSDLRRIACDLRETDSGLYTCTAS 377
            +   + ++          + C A 
Sbjct: 132 RSLRQKTMSYQWTN-LRAPFKCKAV 155

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 54.2 bits (129), Expect = 7e-08
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 16/137 (11%)

Query: 372 YTCT--ASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVI-LNTTRGSVTL 428
           + C       +    +   +SV+PR     +    +        A P + +     S +L
Sbjct: 286 HHCQIPVPDPATHGQYI--VSVQPRRAEKHIKSSVNI-----QMAPPSLQVTKDGDSYSL 338

Query: 429 GWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI-TSTSITVSDLKPDTSYMFIVR 487
            W   + R   +     + ++Y   D  T        +  + S+ +  L+P T Y   VR
Sbjct: 339 RWETMKMRYEHI--DHTFEIQY-RKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVR 395

Query: 488 A--ENSHGLGIPSPVSP 502
                +   GI S  S 
Sbjct: 396 VRTSRTGYNGIWSEWSE 412

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 5/103 (4%)

Query: 404 PDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGG---VAPVIGYTVEYFS-SDLQTGW 459
               + P  P   + ++T +    L W                + + V Y    D     
Sbjct: 103 LTQHVQPPEPRD-LQISTDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDA 161

Query: 460 VVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP 502
            +     +  ++    L P ++Y+  VR   + G  +    S 
Sbjct: 162 AILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSK 204

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 53.4 bits (127), Expect = 1e-07
 Identities = 34/211 (16%), Positives = 50/211 (23%), Gaps = 39/211 (18%)

Query: 412 PPAAPVIL---NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY-FSSDLQTGWVVAAHRIT 467
           PP  P  L         +   W      G        YT+    S        +      
Sbjct: 286 PPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNE 345

Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGT 527
           +  + V        + F +   N   LG       I  T  +    P  L          
Sbjct: 346 TYRLGVQMHPGQEIHNFTLTGRNP--LGQAQSAVVINVTERVAPHDPTSL---------- 393

Query: 528 KVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRIT 587
           KV ++       ST V  +W +       +LL +                          
Sbjct: 394 KVKDIN------STVVTFSWYLPGNFTKINLLCQIEIC-----------------KANSK 430

Query: 588 WEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
            E  N        +T    V  L  +T Y F
Sbjct: 431 KEVRNATIRGAEDSTYHVAVDKLNPYTAYTF 461

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 48.4 bits (114), Expect = 5e-06
 Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 7/96 (7%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY---FSSDLQTGWVVAAHRI 466
           P  P +  + +     VT  W  P          +   +E     S        +     
Sbjct: 387 PHDPTSLKVKDINSTVVTFSWYLPGNFTK---INLLCQIEICKANSKKEVRNATIRGAED 443

Query: 467 TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP 502
           ++  + V  L P T+Y F VR  +S      S  S 
Sbjct: 444 STYHVAVDKLNPYTAYTFRVRC-SSKTFWKWSRWSD 478

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 31/261 (11%), Positives = 65/261 (24%), Gaps = 21/261 (8%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAY---GHLHVTQEGTLRIQGVQKEDAGFFVC 315
              C ++   L ++        + +   N      ++ V+      +    +++    V 
Sbjct: 217 TFCCVSQEKVLSALIGHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTEDNIFGTVI 276

Query: 316 SALSVAGS---TTVRAFLQVREFCVLPKGTFTLGQPNLATG------NSDLRRIACDLRE 366
            A     +               C    G  T      AT        S           
Sbjct: 277 FAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEA 336

Query: 367 TDSGLYTCTASSESGETSWSASLSVEP--RPGPHAVHRMPDSGLFPGPPAAPVILNTTRG 424
             +  Y         +  ++ +L+           +       ++P  P +  + +    
Sbjct: 337 PTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTSFKVKDINST 396

Query: 425 SVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWV---VAAHRITSTSITVSDLKPDTS 481
           +V L W  P              +E   S+         +     +S  + +  L P T 
Sbjct: 397 AVKLSWHLPGNFAK---INFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTL 453

Query: 482 YMFIVRAENSHGLGIPSPVSP 502
           Y F +R          S  S 
Sbjct: 454 YTFRIRCSTETF-WKWSKWSN 473

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185

 Score = 49.7 bits (118), Expect = 4e-07
 Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 13/140 (9%)

Query: 77  EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDD----RSLQIENVGP 132
            PS   +  G  V   C    D    +         P  + ++L      +  ++ NV  
Sbjct: 5   SPSKVILPRGGSVLVTCSTSCDQPKLLGIE-----TPLPKKELLLPGNNRKVYELSNV-- 57

Query: 133 QDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP 192
           Q++   +C      G  + +  LTV+   +     P  +    G+   L C    G P  
Sbjct: 58  QEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRA 117

Query: 193 --TLHWKKNGQFIDLESSKS 210
             T+   +  + +  E +  
Sbjct: 118 QLTVVLLRGEKELKREPAVG 137

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 14/104 (13%)

Query: 411 GPPAAPVILNTTRGSVTLGWGEP---EPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI- 466
             P    +         + W        RG     + GY + Y+ +   +          
Sbjct: 16  VAPGNVRVNVVNSTLAEVHWDPVPLKSIRG----HLQGYRIYYWKTQSSSKRNRRHIEKK 71

Query: 467 ------TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
                 + T   +  L+P + Y   VR  N  G G  SP     
Sbjct: 72  ILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFN 115

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 206

 Score = 49.7 bits (118), Expect = 5e-07
 Identities = 17/127 (13%), Positives = 34/127 (26%), Gaps = 21/127 (16%)

Query: 376 ASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEP 435
           A+  S  ++WS       R                  P   +  +     + L       
Sbjct: 87  ATLGSQTSAWSILKHPFNRQST-----------ILTRPGMEITKDGFHLVIELED----- 130

Query: 436 RGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLG 495
               + P   + V Y+  +      V   R     + +  ++P  +Y    +      +G
Sbjct: 131 ----LGPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQTFVK-AIG 185

Query: 496 IPSPVSP 502
             S  S 
Sbjct: 186 RYSAFSQ 192

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 206

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 18/93 (19%), Positives = 25/93 (26%), Gaps = 3/93 (3%)

Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGW--VVAAHRITST 469
           P    + + +T     L W      G  V   + Y  EY S      W            
Sbjct: 8   PAPQQLSVLSTNMKHLLMWSPVIAPGETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGP 67

Query: 470 SITVSD-LKPDTSYMFIVRAENSHGLGIPSPVS 501
              V+D +     Y   VRA         S + 
Sbjct: 68  ECDVTDDITATVPYNLRVRATLGSQTSAWSILK 100

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 47.7 bits (113), Expect = 5e-07
 Identities = 13/99 (13%), Positives = 27/99 (27%), Gaps = 6/99 (6%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT-- 467
               +   + + T  S+ L W  P         ++ + V   S+       +    +   
Sbjct: 9   RPRLSQLSVTDVTTSSLRLNWEAPPGAFDSF--LLRFGVPSPSTLEPHPRPLLQRELMVP 66

Query: 468 --STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
               S  + DL+  T Y   +              +  T
Sbjct: 67  GTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTART 105

>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor, fibronectin type 3 fold, membrane and SOL glycosylation, immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens} PDB: 3di3_B* 3di2_B* Length = 223

 Score = 49.4 bits (117), Expect = 8e-07
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 6/95 (6%)

Query: 413 PAAPVILN----TTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
           P AP  L+           + +     +   V  ++ + V Y     +  W       T 
Sbjct: 113 PEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLM-HDVAYRQEKDENKWTHVNLSSTK 171

Query: 469 TSITVSDLKPDTSYMFIVRAENSHGL-GIPSPVSP 502
            ++    L+P   Y   VR+   H   G  S  SP
Sbjct: 172 LTLLQRKLQPAAMYEIKVRSIPDHYFKGFWSEWSP 206

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens} Length = 206

 Score = 48.9 bits (116), Expect = 9e-07
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 9/96 (9%)

Query: 412 PPAAPVILNTTR----GSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGW-VVAAHRI 466
            P  P  +        G + + W +P          + + + Y  S  +  W +   +  
Sbjct: 109 KPLPPSSVKAEITINIGLLKISWEKPVFPENN----LQFQIRYGLSGKEVQWKMYEVYDA 164

Query: 467 TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP 502
            S S+++        Y   VR +   GLG  S  S 
Sbjct: 165 KSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSN 200

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 1e-06
 Identities = 44/313 (14%), Positives = 73/313 (23%), Gaps = 121/313 (38%)

Query: 20  IEPATRTNRVSISGDPGFDSRRSRSIFGSVLGAR-------------------GA-LSD- 58
           +  AT T+               +S+    L  R                      + D 
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 59  ----DQWKLIAKEALIKPFPIS----EPSDA-------TVLSGSVVEFVCRVGGDPLPT- 102
               D WK +  + L      S    EP++        +V   S            +PT 
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA----------HIPTI 390

Query: 103 ---ILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHL 159
              ++W              L   SL  +      E                    ++  
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ---PKESTI-----------------SIPS 430

Query: 160 LRDDFRAEPKDTRVASGETAL----------LECGPPKGQPEPTL----------HWKK- 198
           +  + + + ++      E AL           +         P L          H K  
Sbjct: 431 IYLELKVKLEN------EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484

Query: 199 -NGQFIDLESSKSLDLSRRTLGWL----RVRPLYWNVARPRANLNP------RYIGRKMA 247
            + + + L     LD       +L    R     WN +    N          YI     
Sbjct: 485 EHPERMTLFRMVFLDFR-----FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD--- 536

Query: 248 SLLIWNHPRVNRL 260
                N P+  RL
Sbjct: 537 -----NDPKYERL 544

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 49.7 bits (117), Expect = 1e-06
 Identities = 40/350 (11%), Positives = 79/350 (22%), Gaps = 63/350 (18%)

Query: 159 LLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
           L +D +  E      A GE  +L C       E  + W  +     L S K+L +  +  
Sbjct: 4   LKKDVYVVELDWYPDAPGEMVVLTCD---TPEEDGITWTLDQSSEVLGSGKTLTIQVKEF 60

Query: 219 GWLRVRPLY-----WNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLP-SV 272
           G       +      + +    +     I                 L C A+      + 
Sbjct: 61  GDAGQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTC 120

Query: 273 FWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332
           +W    S  L F          + +      G     A            S   +     
Sbjct: 121 WWLTTISTDLTFS---VKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSAC 177

Query: 333 REFCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVE 392
                                            E+        A  +     +++S  + 
Sbjct: 178 PAA-----------------------------EESLPIEVMVDAVHKLKYEQYTSSFFIR 208

Query: 393 PRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY-- 450
               P     +             +        V + W  P+       P   +++ +  
Sbjct: 209 DIIKPDPPKNL------------QLKPLKNSRQVEVSWEYPDT---WSTPHSYFSLTFCV 253

Query: 451 -FSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSP 499
                 +            T  T + +    +    VRA++ +     S 
Sbjct: 254 QVQGKSKREKKD----RVFTDKTSATVICRKNASISVRAQDRYYSSSWSE 299

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 40.9 bits (94), Expect = 9e-04
 Identities = 30/152 (19%), Positives = 38/152 (25%), Gaps = 9/152 (5%)

Query: 69  LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIE 128
           L K   + E        G +V   C         I W  D      G       ++L I+
Sbjct: 4   LKKDVYVVELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQSSEVLGSG-----KTLTIQ 56

Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKG 188
                D G Y C     V S SL   L        +  +    +        L C     
Sbjct: 57  VKEFGDAGQYTCHKGGEVLSHSL--LLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNY 114

Query: 189 QPEPTLHWKKNGQFIDLESSKSLDLSRRTLGW 220
               T  W          S KS   S    G 
Sbjct: 115 SGRFTCWWLTTISTDLTFSVKSSRGSSDPQGV 146

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 221

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 34/214 (15%), Positives = 56/214 (26%), Gaps = 36/214 (16%)

Query: 410 PGPPAAP--VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHR-- 465
            G    P  +   +      L W  PE   G     + YTV+YF    +     +  R  
Sbjct: 6   SGGLPKPANITFLSINMKNVLQWTPPEGLQG---VKVTYTVQYFIYGQKKWLNKSECRNI 62

Query: 466 -ITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARAR 524
             T   ++      +  Y   VRA         +        L      P+  L      
Sbjct: 63  NRTYCDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTT---- 118

Query: 525 LGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAV 584
                          S +V +T    W   P               V+++++       V
Sbjct: 119 ------------DEKSISVVLTAPEKWKRNP-----------EDLPVSMQQIYSNLKYNV 155

Query: 585 RITWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
            +     +  T     T  +  +T L   T Y  
Sbjct: 156 SV-LNTKSNRTWSQCVTNHTLVLTWLEPNTLYCV 188

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 7/138 (5%)

Query: 372 YTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWG 431
           Y     +  G      + S    P        P+  L     +  V+L            
Sbjct: 80  YYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVLTAPE-KWKRNPE 138

Query: 432 EPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENS 491
           +       +   + Y V   ++     W      +T+ ++ ++ L+P+T Y   V +   
Sbjct: 139 DLPVSMQQIYSNLKYNVSVLNTKSNRTWSQ---CVTNHTLVLTWLEPNTLYCVHVESFVP 195

Query: 492 HGLGIPSPVSPI--TRTL 507
            G    +  S     RTL
Sbjct: 196 -GPPRRAQPSEKQCARTL 212

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} Length = 201

 Score = 48.2 bits (114), Expect = 2e-06
 Identities = 28/207 (13%), Positives = 60/207 (28%), Gaps = 39/207 (18%)

Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSI 471
           PP   V +N+      L W  P    G +     +T +Y S  +     +   + T T  
Sbjct: 3   PPPENVRMNSVNFKNILQWESPAFAKGQL----TFTAQYLSYRIFQDKCM---QTTLTEC 55

Query: 472 TVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVN 531
             S L     +   VRAE +      S    IT +   ++             +G   + 
Sbjct: 56  DFSSLSKYGDHTLRVRAEFADE---HSDWVQITFSPVDDT------------IIGPPGMQ 100

Query: 532 LRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKY 591
           +       +  + + +                     +   ++ +  + +  V+  W++ 
Sbjct: 101 VE----VLADCLHMRFLAPK------------IENEYETWTMKNVYNSWTYNVQY-WKQG 143

Query: 592 NMATVMNAATTTSYTVTHLRKFTKYEF 618
                          + +L  +T Y  
Sbjct: 144 TDEKFQITPQYDFEVLRNLEPWTTYCV 170

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} Length = 201

 Score = 44.3 bits (104), Expect = 4e-05
 Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 14/119 (11%)

Query: 397 PHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGG-------VAPVIGYTVE 449
              +   P      GPP   + +      + + +  P+            V     Y V+
Sbjct: 81  WVQITFSPVDDTIIGPPG--MQVEVLADCLHMRFLAPKIENEYETWTMKNVYNSWTYNVQ 138

Query: 450 YFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRA--ENSHGLGIPSPVSPITRT 506
           Y+       + +           + +L+P T+Y   VR    + +  G  S       T
Sbjct: 139 YWKQGTDEKFQI---TPQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTT 194

>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B* 2erj_B* Length = 214

 Score = 48.2 bits (114), Expect = 2e-06
 Identities = 27/155 (17%), Positives = 43/155 (27%), Gaps = 17/155 (10%)

Query: 362 CDLRETDSGLYTCTASSESGETSW-----SASLSVEPRPGPHAVHRM-----PDSGLFPG 411
           C+L       + C     + ++         +L V  R G            P   L   
Sbjct: 48  CELLPVSQASWACNLILGAPDSQKLTTVDIVTLRVLCREGVRWRVMAIQDFKPFENLRLM 107

Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI---TS 468
            P +  +++       + W   +         + +     S      W  A         
Sbjct: 108 APISLQVVHVETHRCNISWEISQA-SHYFERHLEFEARTLSPG--HTWEEAPLLTLKQKQ 164

Query: 469 TSITVSDLKPDTSYMFIVRAENSHGL-GIPSPVSP 502
             I +  L PDT Y F VR +   G     SP S 
Sbjct: 165 EWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQ 199

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 49.2 bits (116), Expect = 3e-06
 Identities = 23/122 (18%), Positives = 37/122 (30%), Gaps = 9/122 (7%)

Query: 387 ASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAP---V 443
           AS           +    +   F  PP     + +   S  +  G P+  G         
Sbjct: 287 ASDGNNTSFWSEEIKFDTEIQAFLLPPV--FNIRSLSDSFHIYIGAPKQSGNTPVIQDYP 344

Query: 444 IGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHG-LGIPSPVSP 502
           + Y + ++ +       +       T +TV +LKP T Y    RA      L   S  S 
Sbjct: 345 LIYEIIFWENTSNAERKI---IEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSD 401

Query: 503 IT 504
             
Sbjct: 402 AV 403

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 43.8 bits (102), Expect = 1e-04
 Identities = 34/237 (14%), Positives = 62/237 (26%), Gaps = 38/237 (16%)

Query: 385 WSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEP-EPRGGGVAPV 443
            +A L+         VH +  +     PP   + ++    +  L W          V  +
Sbjct: 181 KAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWL 240

Query: 444 IGYTVEYFSSDLQTG-WVVAAHRITSTSITVSD-LKPDTSYMFIVRAENSHGLGIPSPVS 501
             +      + L     +     + +T       +     Y+  V+A + +     S   
Sbjct: 241 HAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEI 300

Query: 502 PITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDE 561
               T     L+P      + +                S  + I      G+ P      
Sbjct: 301 KFD-TEIQAFLLPPVFNIRSLSD---------------SFHIYIGAPKQSGNTPV----- 339

Query: 562 ARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
                  +   L   I        I WE  + A        T  TV +L+  T Y  
Sbjct: 340 ------IQDYPLIYEI--------IFWENTSNAERKIIEKKTDVTVPNLKPLTVYCV 382

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A Length = 227

 Score = 47.4 bits (112), Expect = 4e-06
 Identities = 33/166 (19%), Positives = 47/166 (28%), Gaps = 19/166 (11%)

Query: 354 NSDLRRIACDLRETDSGL---YTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFP 410
                R  C L   D+          ++ SG   +   + +       A           
Sbjct: 76  ARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVVLLDA----------- 124

Query: 411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTS 470
            P      L    G V L W  P P    +   I Y V+  +                T 
Sbjct: 125 -PVGLVARLADESGHVVLRW-LP-PPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRTE 181

Query: 471 ITVSDLKPDTSYMFIVRAENSHGL--GIPSPVSPITRTLGLNSLVP 514
             +S+L+  T Y F VRA  +     G  S  S     L  + L P
Sbjct: 182 CVLSNLRGRTRYTFAVRARMAEPSFGGFWSEWSEPVSLLTPSDLDP 227

>2b5i_C Cytokine receptor common gamma chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_C* 3qb7_C* 3qaz_C* Length = 199

 Score = 46.7 bits (110), Expect = 5e-06
 Identities = 14/96 (14%), Positives = 26/96 (27%), Gaps = 10/96 (10%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P  P    +   +   + L W             + + V+Y  +D    W          
Sbjct: 99  PWAPENLTLHKLSESQLELNWNNRFL-----NHCLEHLVQY-RTDWDHSWTEQ-SVDYRH 151

Query: 470 SITVSDLKPDTSYMFIVRAENSHGL---GIPSPVSP 502
             ++  +     Y F VR+  +         S  S 
Sbjct: 152 KFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSH 187

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 44.8 bits (105), Expect = 5e-06
 Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 6/68 (8%)

Query: 85  SGSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRSLQIENVG-PQDEGLYIC 140
           SG+ V   C     P   ILW+ +D  +      +    D+  L ++     +  G Y+C
Sbjct: 20  SGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVC 77

Query: 141 DVENLVGS 148
                   
Sbjct: 78  YPRGSKPE 85

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 48.6 bits (114), Expect = 6e-06
 Identities = 21/191 (10%), Positives = 52/191 (27%), Gaps = 4/191 (2%)

Query: 8   NHAHPMSSPRAEIEPATRTNRVSISGDPGFDSRRSRSIFGSVLGARGALSDDQWKLIAKE 67
           +++  + +P A            ++ DP        +   ++            ++    
Sbjct: 470 SNSGVVQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVALHQTESPSRGLIQEMSGDA 529

Query: 68  ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP--TGRAKILDDRSL 125
           ++                G   E  C      L  + W+  +G +   + +  ++  ++L
Sbjct: 530 SVCPDKSKGSYRQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNL 588

Query: 126 QIENVGPQDEGLYICD-VENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECG 184
            I N+   D G+Y C   E +      +      L             ++  +T      
Sbjct: 589 LIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIA 648

Query: 185 PPKGQPEPTLH 195
                     H
Sbjct: 649 TKVLVASTKHH 659

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 45.1 bits (105), Expect = 6e-05
 Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 5/77 (6%)

Query: 252 WNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAG 311
           + H     L C  + S L  VFW  +   +            +     L I  + + D+G
Sbjct: 545 FKHGGTAELKCSQK-SNLARVFWKFQNGVLK----AESPKYGLMGRKNLLIFNLSEGDSG 599

Query: 312 FFVCSALSVAGSTTVRA 328
            + C +     + TV  
Sbjct: 600 VYQCLSEERVKNKTVFQ 616

>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex; HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 Length = 247

 Score = 46.3 bits (109), Expect = 9e-06
 Identities = 14/96 (14%), Positives = 26/96 (27%), Gaps = 10/96 (10%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P  P    +   +   + L W             + + V+Y  +D    W          
Sbjct: 137 PWAPENLTLHKLSESQLELNWNNRFL-----NHCLEHLVQY-RTDWDHSWTEQ-SVDYRH 189

Query: 470 SITVSDLKPDTSYMFIVRAENSHGL---GIPSPVSP 502
             ++  +     Y F VR+  +         S  S 
Sbjct: 190 KFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSH 225

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A Length = 210

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 15/96 (15%), Positives = 26/96 (27%), Gaps = 7/96 (7%)

Query: 404 PDSGLFPGPPAAPVI----LNTTRGSVTLGWGEPEP-RGGGVAPVIGYTVEYFSSDLQTG 458
               + P PP    +        +  + + W  P           + Y +          
Sbjct: 97  VTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEW 156

Query: 459 WVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGL 494
            +  A     T   +  L P   Y+  VR +  HG 
Sbjct: 157 EIHFA--GQQTEFKILSLHPGQKYLVQVRCKPDHGY 190

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A Length = 236

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 27/134 (20%), Positives = 43/134 (32%), Gaps = 12/134 (8%)

Query: 372 YTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWG 431
           Y    +S  G T      SV+    P     +  + L                 + + W 
Sbjct: 107 YCIKLTSNGG-TVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIH-------ADIQVRWE 158

Query: 432 EPE-PRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAEN 490
            P          V+ Y ++Y   + +T W +    I +TS+ V  LK D  Y   VR+  
Sbjct: 159 APRNADIQKGWMVLEYELQYKEVN-ETKWKMM-DPILTTSVPVYSLKVDKEYEVRVRS-K 215

Query: 491 SHGLGIPSPVSPIT 504
               G     S + 
Sbjct: 216 QRNSGNYGEFSEVL 229

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 32/164 (19%), Positives = 44/164 (26%), Gaps = 36/164 (21%)

Query: 73  FPISEPSDATVLSGSVVEFVCRV-------GGDPLPTILWRRDDGKMPT----------- 114
           + +      TV  G  V   C            P   + W RD                 
Sbjct: 2   YELQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDR 61

Query: 115 -------GRAKILDDR-----SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRD 162
                  GR ++L D      SL I +   +D G Y   VE             ++L   
Sbjct: 62  RVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVT 121

Query: 163 DFRAEPK---DTRVASGETALLEC---GPPKGQPEPTLHWKKNG 200
               +P       + SG    L C   G  +  P  T  W  N 
Sbjct: 122 ALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNA 165

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} Length = 211

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 24/153 (15%), Positives = 38/153 (24%), Gaps = 26/153 (16%)

Query: 362 CDLRETDSGLYT-----CTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAP 416
           CDL    S +         A+S    + WS +    P                  PP   
Sbjct: 66  CDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETK-----------IDPPVMN 114

Query: 417 VILNTTRGSVTLGWGEPEPRGGGVAPV-------IGYTVEYFSSDLQTGWVVAAHRITST 469
           +        V L       R      V       + Y V   ++          +     
Sbjct: 115 ITQVNGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNS--LEKEQKVYEGAHR 172

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP 502
           ++ +  L P +SY  +        L   S  S 
Sbjct: 173 AVEIEALTPHSSYCVVAEIYQP-MLDRRSQRSE 204

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} Length = 211

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 15/87 (17%), Positives = 20/87 (22%), Gaps = 8/87 (9%)

Query: 412 PPAAP--VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY-FSSDLQTGWVVAAHRITS 468
               P  V   +      L W       G       Y V+Y      Q            
Sbjct: 7   ESLKPQRVQFQSRNFHNILQWQPGRALTG---NSSVYFVQYKIYGQRQWKNKEDCWGTQE 63

Query: 469 TS--ITVSDLKPDTSYMFIVRAENSHG 493
            S  +T         Y   VRA ++  
Sbjct: 64  LSCDLTSETSDIQEPYYGRVRAASAGS 90

>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine phosphatase receptor type J; NMR {Homo sapiens} Length = 104

 Score = 41.2 bits (96), Expect = 7e-05
 Identities = 14/96 (14%), Positives = 25/96 (26%), Gaps = 8/96 (8%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
                    +N +  S+TL W   +           YT +   +       +     +  
Sbjct: 8   AIQVFDVTAVNISATSLTLIWKVSDN-----ESSSNYTYKIHVAGETDSSNLNV---SEP 59

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITR 505
              +  L+  T Y   V        G P  +   T 
Sbjct: 60  RAVIPGLRSSTFYNITVCPVLGDIEGTPGFLQVHTP 95

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} Length = 128

 Score = 41.9 bits (98), Expect = 7e-05
 Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 105 WRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENL-VGSISLRASLTV 157
           +              L D +L +  +  +DEG Y C+      GS+     L V
Sbjct: 75  FVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 25/145 (17%), Positives = 44/145 (30%), Gaps = 21/145 (14%)

Query: 362 CDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPG----PPAAPV 417
           C+    +   + C+      + S     SV+     +A    P   + P      P  P 
Sbjct: 145 CENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIVPLTSRVKPDPPH 204

Query: 418 ILNTT--RGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI--------- 466
           I N +     + + W  P+         + Y VE  +S  +T  V               
Sbjct: 205 IKNLSFHNDDLYVQWENPQNFISRC---LFYEVEVNNSQTETHNVFYVQEAKCENPEFER 261

Query: 467 ---TSTSITVSDLKPDTSYMFIVRA 488
               ++   V  + PDT     +R 
Sbjct: 262 NVENTSCFMVPGVLPDTLNTVRIRV 286

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 20/111 (18%), Positives = 33/111 (29%), Gaps = 28/111 (25%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPT-----ILWRRDDGK--------------MPTG 115
           +  P+      G  V   C +    +       + W R                    + 
Sbjct: 4   VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESK 63

Query: 116 RAKILDDR--------SLQIENVGPQDEGLYICDVENL-VGSISLRASLTV 157
           R + +  R        SL++  +  +DEG Y C       GS S+   L V
Sbjct: 64  RLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 6/49 (12%)

Query: 115 GRAKILDDR------SLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
           GR     +       S+ + N+   D G Y C V+   G  + +  L V
Sbjct: 75  GRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 16/99 (16%), Positives = 27/99 (27%), Gaps = 6/99 (6%)

Query: 219 GWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEG 278
              R      N A P          +     +         LSC  E S   +  W  + 
Sbjct: 479 SSERSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPME-SRHATYSWRHKE 537

Query: 279 SQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 317
           +        +    H +    L I+ +  +  G + C A
Sbjct: 538 N-----VEQSCEPGHQSPNCILFIENLTAQQYGHYFCEA 571

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 42.2 bits (98), Expect = 3e-04
 Identities = 15/119 (12%), Positives = 37/119 (31%), Gaps = 10/119 (8%)

Query: 387 ASLSVEPRPGPH-AVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIG 445
           A+L    + G +  VH +  +     PP   + ++    +  L W             + 
Sbjct: 178 AALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMT---FQVQ 234

Query: 446 YTVEYFSS---DLQTGW--VVAAHRITSTSITVS-DLKPDTSYMFIVRAENSHGLGIPS 498
           +   +      +    W  +     + +T      ++     Y+  V+A + +     S
Sbjct: 235 WLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWS 293

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A Length = 110

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 12/86 (13%), Positives = 25/86 (29%), Gaps = 23/86 (26%)

Query: 82  TVLSGSVVEFVCRVGGDPLP-----TILWRRDDGK---------------MP--TGRAKI 119
                   +  C+             + W+  +                      GR   
Sbjct: 5   QAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSF 64

Query: 120 L-DDRSLQIENVGPQDEGLYICDVEN 144
             D  +L++ N+  +D+GLY C + +
Sbjct: 65  DSDSWTLRLHNLQIKDKGLYQCIIHH 90

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 1/82 (1%)

Query: 59  DQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAK 118
           D  +L+      KPF +S      ++ G  +   C     P       ++          
Sbjct: 94  DTLELVVTGLYGKPF-LSADRGLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQS 152

Query: 119 ILDDRSLQIENVGPQDEGLYIC 140
                +  +  V     G+Y C
Sbjct: 153 GEHPANFSLGPVDLNVSGIYRC 174

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 22/147 (14%), Positives = 40/147 (27%), Gaps = 9/147 (6%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL----DDRSLQ 126
            PF IS  S   +     V+  C+   +   T L    +        ++      D    
Sbjct: 9   MPF-ISAKSSPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFV 67

Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAE---PKDTRVASGETALLEC 183
           I+++     G Y C             +L + +     +      +   +  GE   L C
Sbjct: 68  IDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTC 127

Query: 184 GPPKGQPEPTLHWKKNGQFIDLESSKS 210
                 P       K G+    +    
Sbjct: 128 SSA-HIPFDRFSLAKEGELSLPQHQSG 153

>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine receptor, sugarbridge, fibronectine domain, signaling, cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC; 2.80A {Homo sapiens} Length = 219

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 10/100 (10%)

Query: 413 PAAPVILNTTR-GSVTLGWGEP--EPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI--- 466
           PA P  +  T  G   + W     +P    +   + Y ++Y +             I   
Sbjct: 101 PAPPFDVTVTFSGQYQISWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVD 160

Query: 467 -TSTSITVSDLKPDTSYMFIVRAENSHGL---GIPSPVSP 502
             S S+   + + D+SY   VRA    G    G  S  S 
Sbjct: 161 SRSVSLLPLEFRKDSSYELQVRAGPMPGSSYQGTWSEWSD 200

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 57/360 (15%), Positives = 86/360 (23%), Gaps = 79/360 (21%)

Query: 59  DQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAK 118
           D  K        KPF +S    A V  G  V   C          +  ++D         
Sbjct: 12  DDDKGSHMGGQDKPF-LSAWPSAVVPRGGHVTLRCH-YRHRFNNFMLYKEDRIHIPIFHG 69

Query: 119 ILDDRSLQIENVGPQDEGLYICDVENLVG-------SISLRASLTVHLLRDDFRAEPKDT 171
            +   S  +  V     G Y C   +          S  +   +T +  +    A P   
Sbjct: 70  RIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHP-GP 128

Query: 172 RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVA 231
            V SGE  +L+C          LH  K G   D            +     + P+   +A
Sbjct: 129 LVKSGERVILQCWSDIMFEHFFLH--KEGISKDPSRLVGQIHDGVSKANFSIGPMMLALA 186

Query: 232 RPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGH 291
                    Y                    C+   +  P    +     +          
Sbjct: 187 G-------TY-------------------RCYGSVTHTPYQ-LSAPSDPL---------D 210

Query: 292 LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKG--TFTLGQPN 349
           + VT                 +   +LS      V+A   V   C        + L +  
Sbjct: 211 IVVTG---------------PYEKPSLSAQPGPKVQAGESVTLSCSSRSSYDMYHLSREG 255

Query: 350 LATGNSDLRRIACD---------LRETDSGLYTCTASSESGETSWSAS-----LSVEPRP 395
            A           +            T  G Y C  S       WS       +SV   P
Sbjct: 256 GAHERRLPAVRKVNRTFQADFPLGPATHGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP 315

>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold, fibronectin type III modules, helical bundle, cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens} Length = 317

 Score = 41.8 bits (97), Expect = 5e-04
 Identities = 22/98 (22%), Positives = 31/98 (31%), Gaps = 6/98 (6%)

Query: 404 PDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAA 463
           PD  +   PP    I  T    V L W +P P        + Y V+  +      +    
Sbjct: 6   PDEKISLLPPVNFTIKVTGLAQVLLQW-KPNPDQEQRNVNLEYQVKINAPKEDD-YET-- 61

Query: 464 HRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVS 501
               + S  V+ L    S       +N H L   S  S
Sbjct: 62  --RITESKAVTILHMGFSASVRTILQNDHSLLASSWAS 97

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 21/101 (20%), Positives = 29/101 (28%), Gaps = 18/101 (17%)

Query: 76  SEPSDATVLSGSVVEFVCRV-GGDPLPTILWRR---------DDGKMPT------GRAKI 119
                 TV+SGS V         +    + W           D  K         GR ++
Sbjct: 9   GHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRL 68

Query: 120 LDDR-SLQIENVGPQDEGLYICDVENLVG-SISLRASLTVH 158
                +L I  V  +D   YI  V    G     +  L V 
Sbjct: 69  DPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVL 109

>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III module, structural protein; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 98

 Score = 38.6 bits (89), Expect = 7e-04
 Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 7/85 (8%)

Query: 411 GPPAAPVILNTTR--GSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
             P    I  T     S  + W  P+P     + +  Y + +   +    W  A      
Sbjct: 6   SGPVEVFITETPSQPNSHPIQWNAPQP-----SHISKYILRWRPKNSVGRWKEATIPGHL 60

Query: 469 TSITVSDLKPDTSYMFIVRAENSHG 493
            S T+  LKP   Y   + +   +G
Sbjct: 61  NSYTIKGLKPGVVYEGQLISIQQYG 85

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 21/104 (20%), Positives = 30/104 (28%), Gaps = 27/104 (25%)

Query: 82  TVLSGSVVEFVCRV---GGDPLPTILWRRDDGKMP------------------TGRAKIL 120
             L G   E  CR+          + W R                         GR ++L
Sbjct: 17  RALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELL 76

Query: 121 DDR------SLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
            +       +L+I+NV   DEG Y C   +          L V 
Sbjct: 77  KESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 120

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	633
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.98
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.98
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.98
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.97
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.97
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.97
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.97
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.97
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.97
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.97
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.97
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.97
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.97
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.97
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.97
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.96
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.96
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.96
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.95
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.95
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.95
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.95
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.95
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.95
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.95
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.95
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.95
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.94
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.94
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.94
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.94
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.94
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.94
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.94
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.94
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.93
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.93
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	99.92
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.92
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.92
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.91
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.91
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.91
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.91
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.91
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.91
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.91
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.91
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.91
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.91
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.9
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.9
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.9
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.9
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	99.9
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	99.9
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.9
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	99.89
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.89
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.89
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.89
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.89
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.89
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	99.89
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.89
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	99.88
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.88
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.88
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.88
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.88
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.88
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.88
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.88
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	99.88
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	99.88
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.88
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.88
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.88
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.88
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.87
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.87
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.87
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.87
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.87
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.87
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.86
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	99.86
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	99.86
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.86
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.86
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.86
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.86
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.85
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.85
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.85
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	99.85
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.85
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.85
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.85
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	99.85
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	99.85
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.85
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.85
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.85
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.85
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.84
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	99.84
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.84
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.84
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.84
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.83
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	99.83
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.83
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	99.83
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.83
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.83
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	99.83
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.83
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.83
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.83
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.82
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.82
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.82
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.82
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.82
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.82
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.82
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.82
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	99.82
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	99.82
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.82
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	99.82
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.81
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	99.81
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.81
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.81
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.81
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	99.81
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.8
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.8
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.8
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.8
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.8
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.79
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.79
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.79
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.79
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.79
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	99.79
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	99.79
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.78
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.77
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.77
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	99.77
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.77
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.76
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	99.76
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.76
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.76
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.75
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	99.75
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.75
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.74
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.74
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.74
4go6_B	232	HCF C-terminal chain 1; tandem fibronectin repeat,	99.74
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.74
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.74
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.73
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.73
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.73
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.73
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.73
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.73
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.73
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.73
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.73
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.73
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.73
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.72
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.72
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.72
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.72
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.71
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.71
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.71
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.71
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.71
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.71
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.71
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.7
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.7
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.7
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	99.7
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	99.7
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.7
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.7
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.7
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.69
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.69
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.69
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.69
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.69
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.69
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.68
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.68
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.68
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.68
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.68
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.68
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.67
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.67
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.67
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.67
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.67
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.67
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.67
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.67
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.67
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.67
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.67
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.66
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.66
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.66
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.66
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.66
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.66
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	99.66
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.65
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.65
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	99.65
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.65
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.65
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	99.65
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.64
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.64
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.64
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.64
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.64
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.64
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.64
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.63
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.63
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.63
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	99.63
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.62
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.62
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.62
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.62
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.62
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.62
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.61
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.61
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.6
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.6
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	99.6
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	99.6
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	99.6
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	99.6
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.6
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.59
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.59
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.59
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.59
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.59
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	99.59
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.59
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.59
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.58
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.58
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.58
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.58
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.58
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.58
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.58
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.58
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	99.57
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.57
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.57
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	99.57
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.56
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.56
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.56
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	99.55
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	99.55
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.55
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.55
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.55
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.55
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.55
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.54
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.54
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.54
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.54
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.54
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.53
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.53
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.53
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.53
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.53
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.53
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.53
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.52
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.52
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.51
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.51
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.51
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.51
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.51
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	99.51
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.51
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.51
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.5
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.5
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.5
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.5
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.49
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.49
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.48
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.48
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.48
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	99.48
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.48
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.48
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.48
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.48
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.48
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.48
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.47
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.47
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.47
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.47
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	99.47
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.47
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.46
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	99.46
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.46
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.46
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	99.46
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.45
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.45
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.45
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.45
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.45
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.45
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	99.45
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.44
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.44
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.44
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.44
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.44
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.43
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.43
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.43
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.43
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	99.43
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.43
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.43
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.42
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.42
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.42
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.42
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	99.42
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.42
2crm_A	120	Fibronectin type-III domain containing protein 3A;	99.42
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	99.42
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.41
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	99.41
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	99.41
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.41
1he7_A	126	High affinity nerve growth factor receptor; transf	99.41
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	99.4
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.4
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.4
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	99.4
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.4
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	99.4
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	99.4
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.4
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.4
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	99.4
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.39
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	99.39
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.39
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.39
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.39
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	99.38
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	99.38
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	99.38
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	99.38
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	99.37
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	99.37
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.37
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.37
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	99.37
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.37
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	99.37
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.37
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	99.37
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	99.37
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	99.37
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	99.36
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	99.36
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	99.36
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	99.36
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	99.36
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.36
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.36
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	99.36
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	99.35
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.35
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	99.35
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	99.35
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	99.35
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	99.35
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.35
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.35
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.34
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	99.34
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	99.34
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	99.34
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.34
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.34
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.34
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.34
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.34
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.34
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.34
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.34
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	99.34
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	99.33
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.33
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	99.33
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	99.33
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	99.33
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.33
2crm_A	120	Fibronectin type-III domain containing protein 3A;	99.33
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	99.33
2crz_A	110	Fibronectin type-III domain containing protein 3A;	99.33
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.33
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	99.33
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.33
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	99.32
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	99.32
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.32
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.32
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	99.32
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.32
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.32
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.32
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	99.32
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.31
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	99.31
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.31
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	99.31
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.31
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	99.31
2ens_A	96	Advanced glycosylation END product-specific recept	99.31
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	99.31
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	99.3
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.3
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.3
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.3
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.3
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.3
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.3
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	99.3
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.3
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.3
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	99.3
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	99.29
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.29
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.29

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=100.00  E-value=1.1e-42  Score=357.26  Aligned_cols=365  Identities=20%  Similarity=0.336  Sum_probs=267.8

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC--CccCCC------CCeEEc---ccceEEEccCCCCCCeEEE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD--DGKMPT------GRAKIL---DDRSLQIENVGPQDEGLYI  139 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~--~~~i~~------~~~~~~---~~~~L~i~~v~~~d~G~Y~  139 (633)
                      +|.|.. +.+..+.+|+.+.|.|.+.|.|.|.|+|+|+  |..+..      ++....   ..+.|.|.+++.+|+|.|+
T Consensus         1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~   79 (389)
T 2jll_A            1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD   79 (389)
T ss_dssp             CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEE
T ss_pred             CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEE
Confidence            577766 6678899999999999999999999999999  776643      344433   2468999999999999999


Q ss_pred             EEEEeCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceee
Q psy15127        140 CDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLG  219 (633)
Q Consensus       140 C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~  219 (633)
                      |.|.|..|..+..+.|.|..+ |.+...+....+.+|+.+.|.|. ..|.|.+.+.|+++|..+.....           
T Consensus        80 C~a~n~~g~~~~~~~l~V~~~-P~~~~~~~~~~~~~g~~~~l~C~-~~g~p~~~i~W~~~g~~l~~~~~-----------  146 (389)
T 2jll_A           80 CEAASRIGGHQKSMYLDIEYA-PKFISNQTIYYSWEGNPINISCD-VKSNPPASIHWRRDKLVLPAKNT-----------  146 (389)
T ss_dssp             EEEECSSCEEEEEEEEEEEEE-EEECCSCCEEEECTTCCEEEEEC-EEEESCCEEEEEETTEESSCTTC-----------
T ss_pred             EEEEeCCCCcceEEEEEEEeC-CEEecCcceEEeccCCEEEEEEE-EEecCCCeEEEEECCccCCcccC-----------
Confidence            999999999999999999987 76665555445666777777776 45555566666666554432110           


Q ss_pred             eEEEeeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEE---cc
Q psy15127        220 WLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV---TQ  296 (633)
Q Consensus       220 ~~~~~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~---~~  296 (633)
                                                                                            .++..   ..
T Consensus       147 ----------------------------------------------------------------------~~~~~~~~~~  156 (389)
T 2jll_A          147 ----------------------------------------------------------------------TNLKTYSTGR  156 (389)
T ss_dssp             ----------------------------------------------------------------------TTEEEEECSS
T ss_pred             ----------------------------------------------------------------------ceEEEeccCC
Confidence                                                                                  01111   12


Q ss_pred             CceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEecccCCCceEEeCCCccccCCCCCceEEecccccCCEEEEEEE
Q psy15127        297 EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTA  376 (633)
Q Consensus       297 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~p~~~~~~~~~~~g~p~~~~~i~~~~~~d~g~y~c~a  376 (633)
                      ...|.|.++..+|.|.|+|.|.|..|.....+.+.+.                                           
T Consensus       157 ~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~-------------------------------------------  193 (389)
T 2jll_A          157 KMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALA-------------------------------------------  193 (389)
T ss_dssp             CEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEEC-------------------------------------------
T ss_pred             EEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEec-------------------------------------------
Confidence            3468899999999999999998888876655444332                                           


Q ss_pred             EcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCC
Q psy15127        377 SSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQ  456 (633)
Q Consensus       377 ~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~  456 (633)
                                      ..               |.+|..+.........+.|+|.++...+  +.++..|.++|+..+. 
T Consensus       194 ----------------~~---------------P~~P~~~~~~~~~~~~~~l~w~~p~~~~--g~pi~~y~v~~~~~~~-  239 (389)
T 2jll_A          194 ----------------DV---------------PSSPYGVKIIELSQTTAKVSFNKPDSHG--GVPIHHYQVDVKEVAS-  239 (389)
T ss_dssp             ----------------CC---------------CCCCEEEEEEEECSSCEEEEEECCSCCT--TSCEEEEEEEEEETTC-
T ss_pred             ----------------CC---------------CCCCcceEEeeccCCEEEEEEeCCCCCC--CcceEEEEEEEEECCC-
Confidence                            11               2234445555667789999999876543  5689999999998754 


Q ss_pred             CCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeee
Q psy15127        457 TGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELI  536 (633)
Q Consensus       457 ~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  536 (633)
                      ..|...........++|.+|.+++.|.|+|.|.|..|.|.++... .+.|....|..+|.+                ...
T Consensus       240 ~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~-~~~t~~~~~p~~p~~----------------~~~  302 (389)
T 2jll_A          240 EIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIE-IFQTLPVREPSPPSI----------------HGQ  302 (389)
T ss_dssp             SCCEEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCE-EEECCCCCCCCCCCE----------------EEE
T ss_pred             cccEEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcce-EEEecCCCCCCCCcc----------------ccc
Confidence            556644443445789999999999999999999999999988765 456655533333444                556


Q ss_pred             ecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeE
Q psy15127        537 PTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKY  616 (633)
Q Consensus       537 ~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y  616 (633)
                      ..+.+++.|+|.+|        .+.++.+.+| .|+|+..+...       |...    ....+..++++|.+|++++.|
T Consensus       303 ~~~~~~v~l~W~~p--------~~~~~~i~~Y-~v~~~~~~~~~-------~~~~----~~~~~~~~~~~i~~L~~~t~Y  362 (389)
T 2jll_A          303 PSSGKSFKLSITKQ--------DDGGAPILEY-IVKYRSKDKED-------QWLE----KKVQGNKDHIILEHLQWTMGY  362 (389)
T ss_dssp             EETTTEEEEEECCC--------CCCSSCCCEE-EEEEEC------------CCBC----CEECTTCCEEEECSCCTTCEE
T ss_pred             cCcCCEEEEEEECC--------CCCCCcccEE-EEEEEeCCCCc-------ceeE----eeccCCcceEEeCCcCCCCEE
Confidence            67899999999954        4678899999 99999855443       5422    123456788999999999999


Q ss_pred             EEEEeccccccccccCC
Q psy15127        617 EFFLVPFFKTVEGARLD  633 (633)
Q Consensus       617 ~~~v~a~n~~g~g~~s~  633 (633)
                      .|+|+|.|..|.|++|+
T Consensus       363 ~~~V~A~n~~G~s~~s~  379 (389)
T 2jll_A          363 EVQITAANRLGYSEPTV  379 (389)
T ss_dssp             EEEEEEEC-CCBCCCEE
T ss_pred             EEEEEEEcCCcCCCcee
Confidence            99999999999999874

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=4.3e-42  Score=370.01  Aligned_cols=456  Identities=20%  Similarity=0.272  Sum_probs=312.9

Q ss_pred             CCCCccccccceeeEEEEecccCCCCCceEEee---CceEEEcCCCC--CCeEEEEEEe------------c---CcCCe
Q psy15127         14 SSPRAEIEPATRTNRVSISGDPGFDSRRSRSIF---GSVLGARGALS--DDQWKLIAKE------------A---LIKPF   73 (633)
Q Consensus        14 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~--~G~Y~C~a~~------------v---~~~p~   73 (633)
                      ++|.+.|+|+       .+|.+...+.++++..   .++|.|.+++.  +|.|+|.|.|            +   ..+|.
T Consensus        31 g~p~~~v~W~-------k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~v~~~~~~p~  103 (570)
T 3b43_A           31 GTPEIRIAWY-------KEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPS  103 (570)
T ss_dssp             SSSSCEEEEE-------CSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEECCCCCCCE
T ss_pred             cCCCCEEEEE-------ECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEEEeCCceEEEEEEEEECCCCCCCc
Confidence            3455566633       3344444455555533   25799999998  9999999998            1   24677


Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeE----EcccceEEEccCCCCCCeEEEEEEEeCCceE
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAK----ILDDRSLQIENVGPQDEGLYICDVENLVGSI  149 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~  149 (633)
                      +...+.+..+.+|+.+.|.|.+.|.|.+.|+|+|+|..+..+...    ......|.|.+++.+|+|.|+|.|.|..|..
T Consensus       104 ~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  183 (570)
T 3b43_A          104 FARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTA  183 (570)
T ss_dssp             ESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             ccccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEE
Confidence            878888888999999999999999999999999999988754322    1234689999999999999999999999998


Q ss_pred             EEEEEEEEEe--eccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEecc--ceeeeEE---
Q psy15127        150 SLRASLTVHL--LRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR--RTLGWLR---  222 (633)
Q Consensus       150 s~~~~l~V~~--~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~--~~~~~~~---  222 (633)
                      +..+.|.|..  .+|.+...|....+.+|+.+.|.|. ..|.|.+.+.|++++..+.......+....  ..+.+..   
T Consensus       184 ~~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~-~~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~  262 (570)
T 3b43_A          184 SSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCH-VTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTK  262 (570)
T ss_dssp             EEEEEEEEECCCCCCEEEECCCCBCCBSBSCEEEEEE-EESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCG
T ss_pred             EEEEEEEEcCCCCCCccccCCceeEecCCCeEEEEEE-EEECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCc
Confidence            8888888764  2366667777888899999999999 578899999999999988765443332221  2232222   


Q ss_pred             -EeeeEEEEeecCCCC-----------CCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccc
Q psy15127        223 -VRPLYWNVARPRANL-----------NPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYG  290 (633)
Q Consensus       223 -~~g~y~C~a~~~~~~-----------~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~  290 (633)
                       ..|.|+|.|.|..+.           +|.+... ......+..|+.+.|.|.+.|.|.+.+.|+++|..+...  ....
T Consensus       263 ~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~-~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~--~~~~  339 (570)
T 3b43_A          263 GDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKK-LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQES--SKFR  339 (570)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEECCBCCCEEEEC-CCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCS--SSEE
T ss_pred             ccCEEEEEEEECCCCcEEEEEEEEeecCCccccc-CCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCC--CcEE
Confidence             248999999998763           2222211 112234567899999999999999999999999987421  1111


Q ss_pred             eEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEecccC------------------------CCceEEeC
Q psy15127        291 HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVL------------------------PKGTFTLG  346 (633)
Q Consensus       291 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~------------------------p~p~~~~~  346 (633)
                      .........|.|.++..+|+|.|+|.|.|..|..+.++.|.|...+..                        |+|.+.|.
T Consensus       340 ~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~  419 (570)
T 3b43_A          340 MSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWH  419 (570)
T ss_dssp             EEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEE
T ss_pred             EEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEE
Confidence            112233457999999999999999999999999999999988754321                        22333332


Q ss_pred             CCcccc--C--------CCCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCc
Q psy15127        347 QPNLAT--G--------NSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAP  416 (633)
Q Consensus       347 ~~~~~~--g--------~p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~  416 (633)
                      ......  +        +....+.|.++..+|+|.|+|.|.|..|.....+.|.|..+|..  ......-....+.+..+
T Consensus       420 k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~--~~~~~~~~~~~g~~~~l  497 (570)
T 3b43_A          420 KDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRF--VKKLSDISTVVGEEVQL  497 (570)
T ss_dssp             ETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEE--EECCCCBCCBTTCCEEE
T ss_pred             ECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCcc--cccCCCceecCCCeEEE
Confidence            221111  0        01123468889999999999999999999988899998876543  11111111222222233


Q ss_pred             EEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCC
Q psy15127        417 VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGI  496 (633)
Q Consensus       417 ~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~  496 (633)
                      .+.......+.+.|....      ..+.         ....... .........+.|.++.+.+.+.|.|.|.|.+|...
T Consensus       498 ~c~~~g~p~~~v~W~k~~------~~~~---------~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~  561 (570)
T 3b43_A          498 QATIEGAEPISVAWFKDK------GEIV---------RESDNIW-ISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQE  561 (570)
T ss_dssp             EEEEESCSSCCCEEEETT------EECC---------CCTTTEE-ECCCSSEEEEEESSCCTTCCEEEEEEEECSSCEEE
T ss_pred             EEEEecCCCCEEEEEeCC------eEec---------cCCCeEE-EEECCCEEEEEECcCCHHHCEEEEEEEEECCcEEE
Confidence            333333444555554321      0000         0000110 00112345789999999999999999999999875


Q ss_pred             CC
Q psy15127        497 PS  498 (633)
Q Consensus       497 ~s  498 (633)
                      .+
T Consensus       562 ~~  563 (570)
T 3b43_A          562 CF  563 (570)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=4.1e-39  Score=346.82  Aligned_cols=358  Identities=21%  Similarity=0.247  Sum_probs=265.5

Q ss_pred             EEEecccCCCCCceEEe---eCceEEEcCCCC--CCeEEEEEEe---------------cCcCCeeeeCCCceEEEcCCe
Q psy15127         29 VSISGDPGFDSRRSRSI---FGSVLGARGALS--DDQWKLIAKE---------------ALIKPFPISEPSDATVLSGSV   88 (633)
Q Consensus        29 ~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~--~G~Y~C~a~~---------------v~~~p~~~~~~~~~~~~~G~~   88 (633)
                      |..+|.+...+.++...   ..++|.|.+++.  +|.|+|.|.|               ...+|.+...|....+.+|+.
T Consensus       135 W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~  214 (570)
T 3b43_A          135 WYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGES  214 (570)
T ss_dssp             EEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCEEEECCCCBCCBSBSC
T ss_pred             EEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCCCCCccccCCceeEecCCCe
Confidence            33344444444444332   236799999998  9999999998               134678888888888999999


Q ss_pred             EEEEEEEeccCCCeEEEEeCCccCCCCC-eEE--c-ccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEeecccc
Q psy15127         89 VEFVCRVGGDPLPTILWRRDDGKMPTGR-AKI--L-DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDF  164 (633)
Q Consensus        89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~~-~~~--~-~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~  164 (633)
                      ++|.|.+.|.|.+.|+|+|++..+..+. ...  . ....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+ |.+
T Consensus       215 ~~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~-p~~  293 (570)
T 3b43_A          215 GTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP-PRF  293 (570)
T ss_dssp             EEEEEEEESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBCC-CEE
T ss_pred             EEEEEEEEECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeecC-Ccc
Confidence            9999999999999999999999886543 222  1 2368999999999999999999999999999999999987 665


Q ss_pred             ccCCC-ceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEecc--ceeeeEEE----eeeEEEEeecCCCC
Q psy15127        165 RAEPK-DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR--RTLGWLRV----RPLYWNVARPRANL  237 (633)
Q Consensus       165 ~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~g~y~C~a~~~~~~  237 (633)
                      ...+. ...+.+|+.+.|.|. ..|.|.+.+.|+|++..+.......+....  ..|.+..+    .|.|+|.|.|..+.
T Consensus       294 ~~~~~~~~~v~~g~~~~l~C~-~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~  372 (570)
T 3b43_A          294 IKKLEPSRIVKQDEHTRYECK-IGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS  372 (570)
T ss_dssp             EECCCSBCCEESSCEEEEEEE-EESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBC
T ss_pred             cccCCCccEEcCCCcEEEEEE-EeeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCE
Confidence            54433 346789999999999 688999999999999998765543332221  22333332    48999999998874


Q ss_pred             C-----------CcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCC
Q psy15127        238 N-----------PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ  306 (633)
Q Consensus       238 ~-----------p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~  306 (633)
                      .           |.+..  ........+|+.+.|.|.+.|.|.|.+.|+|+|..+..  .............+|.|.++.
T Consensus       373 ~~~~~~l~V~~~P~~~~--~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~--~~~~~~~~~~~~~~L~i~~v~  448 (570)
T 3b43_A          373 ASSSTSLKVKEPPVFRK--KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS--GKKYKIMSENFLTSIHILNVD  448 (570)
T ss_dssp             CEEEEEECEECCCEECS--CCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCS--SSSEEEEEETTEEEEEECSCC
T ss_pred             EEEEEEEEecCCCeeec--CCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcC--CCCEEEEEcCCEEEEEECCCC
Confidence            2           22211  12234556899999999999999999999999988742  111111111122479999999


Q ss_pred             CCCCeEEEEEEEeCCceeEEEEEEEEEeccc------------------------CCCceEEeCCCcc-cc--C------
Q psy15127        307 KEDAGFFVCSALSVAGSTTVRAFLQVREFCV------------------------LPKGTFTLGQPNL-AT--G------  353 (633)
Q Consensus       307 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~------------------------~p~p~~~~~~~~~-~~--g------  353 (633)
                      .+|+|.|+|.|.|..|.....+.|.|...+.                        .|+|.+.|..... ..  +      
T Consensus       449 ~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~~~  528 (570)
T 3b43_A          449 SADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWIS  528 (570)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEECCCCEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEECCCCTTTEEEC
T ss_pred             hhhCEEEEEEEEECCCeEEEEEEEEeccCCcccccCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEeccCCCeEEEE
Confidence            9999999999999999999888888764321                        2334444433221 00  0      


Q ss_pred             --CCCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEee
Q psy15127        354 --NSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVE  392 (633)
Q Consensus       354 --~p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~  392 (633)
                        .....+.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus       529 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~L~V~  569 (570)
T 3b43_A          529 YSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL  569 (570)
T ss_dssp             CCSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEEECCB
T ss_pred             ECCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEEEEEe
Confidence              011245788899999999999999999999999999875

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=1.3e-36  Score=332.91  Aligned_cols=420  Identities=17%  Similarity=0.201  Sum_probs=283.3

Q ss_pred             ceEEeeCceEEEcCCCC--CCeEEEEEEe-------------cC---cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCe
Q psy15127         41 RSRSIFGSVLGARGALS--DDQWKLIAKE-------------AL---IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPT  102 (633)
Q Consensus        41 ~~~~~~~~~L~i~~v~~--~G~Y~C~a~~-------------v~---~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~  102 (633)
                      |..+..+++|.|.+++.  +|.|+|.+.+             |.   .+|.+... ....+.+|+.+.|.|.+.+ |.+.
T Consensus        64 r~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~-~~~~v~~g~~v~l~C~~~~-p~~~  141 (642)
T 1e07_A           64 REIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSN-NSKPVEDKDAVAFTCEPET-QDAT  141 (642)
T ss_pred             ceeeccCCcEEECCCCcccCcEEEEEEEcCCCeEEEEEEEEEecccCCCCcEEcc-CceeEecCCcEEEEEECCC-CCee
Confidence            56666788999999998  9999999976             22   24555443 3456889999999999988 8899


Q ss_pred             EEEEeCCccCCCCCe-EEc-ccceEEEccCCCCCCeEEEEEEEeCCce-EEEEEEEEEEeeccccccCCCceEEecCCcE
Q psy15127        103 ILWRRDDGKMPTGRA-KIL-DDRSLQIENVGPQDEGLYICDVENLVGS-ISLRASLTVHLLRDDFRAEPKDTRVASGETA  179 (633)
Q Consensus       103 i~W~~~~~~i~~~~~-~~~-~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~  179 (633)
                      ++|+++|..+..+.. ... .++.|.|.+++.+|+|.|+|.|.|..+. .+..+.|.|...++.+.+.+....+.+|+.+
T Consensus       142 v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~G~~~  221 (642)
T 1e07_A          142 YLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENL  221 (642)
T ss_pred             EEEEECCeECCCCCceEEcCCCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCCCcEEecCCcccccCCEE
Confidence            999999998865433 322 3568999999999999999999998876 4677889998764555666777788999999


Q ss_pred             EEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEEeeeEEEEeecCCCCCCc-----ccc--------ccc
Q psy15127        180 LLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPR-----YIG--------RKM  246 (633)
Q Consensus       180 ~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~a~~~~~~~p~-----~~~--------~~~  246 (633)
                      .|.|. ..+.|.+.+.|+++|..+....  .+.+.+...   ...|.|+|.|.|..+....     +..        ...
T Consensus       222 ~l~C~-~~g~p~~~i~W~~~g~~i~~~~--~L~i~~~~~---~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~  295 (642)
T 1e07_A          222 NLSCH-AASNPPAQYSWFVNGTFQQSTQ--ELFIPNITV---NNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITS  295 (642)
T ss_pred             EEEEE-cCCCCCcEEEEEECCeEcccCC--ceEEecccc---cCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEEc
Confidence            99999 4899999999999998875322  222222222   2368999999997653210     000        001


Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEE-ccCceEEEcCCCCCCCeEEEEEEEeCCcee-
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV-TQEGTLRIQGVQKEDAGFFVCSALSVAGST-  324 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-  324 (633)
                      .....+..|+.+.|.|.+.+.| +.+.|+++|..+..     ..++.. ..++.|.|.++..+|+|.|+|.|.|..|.. 
T Consensus       296 ~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~-----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  369 (642)
T 1e07_A          296 NNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPV-----SPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDH  369 (642)
T ss_pred             CCceeEecCCcEEEEEECCCCC-ccEEEEECCccCCC-----cCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcc
Confidence            1223445678899999999986 69999999987631     123333 245689999999999999999999999874 


Q ss_pred             EEEEEEEEEecccC-------------------------CCceEEeCCCccccCCCCCceEEecccccCCEEEEEEEEcC
Q psy15127        325 TVRAFLQVREFCVL-------------------------PKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSE  379 (633)
Q Consensus       325 ~~~~~l~v~~~~~~-------------------------p~p~~~~~~~~~~~g~p~~~~~i~~~~~~d~g~y~c~a~n~  379 (633)
                      +..+.|.|...+..                         |+|.+.|........ ....+.|.++..+|+|.|+|.|.|.
T Consensus       370 s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~  448 (642)
T 1e07_A          370 SDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQ-HTQELFISNITEKNSGLYTCQANNS  448 (642)
T ss_pred             eeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcC-CCceEEEccCChhhCeEEEEEEEcC
Confidence            45567777643322                         112222221111100 1134578899999999999999999


Q ss_pred             CcceeEE--EEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCC
Q psy15127        380 SGETSWS--ASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQT  457 (633)
Q Consensus       380 ~g~~~~~--~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~  457 (633)
                      .|....+  +.+.|...+..+.+..            ...........+.|.|.....     .    ..+.|...+..-
T Consensus       449 ~g~~~~s~~~~v~v~~~~~~p~i~~------------~~~~~v~~g~~v~l~C~~~~~-----~----~~i~W~~~g~~l  507 (642)
T 1e07_A          449 ASGHSRTTVKTITVSAELPKPSISS------------NNSKPVEDKDAVAFTCEPEAQ-----N----TTYLWWVNGQSL  507 (642)
T ss_pred             CCCCcccceEEEEEeccCCCceEec------------CCceeecCCCeEEEEEECCCC-----C----cEEEEEECCEeC
Confidence            9877554  4455544322211110            011112245567777765421     1    123333332111


Q ss_pred             C-eEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCC
Q psy15127        458 G-WVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGI  496 (633)
Q Consensus       458 ~-~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~  496 (633)
                      . ............++|.++...+.+.|+|.|.|..|...
T Consensus       508 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  547 (642)
T 1e07_A          508 PVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANR  547 (642)
T ss_pred             CCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCcc
Confidence            0 00001111245799999999999999999999999653

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=9.9e-37  Score=333.97  Aligned_cols=419  Identities=16%  Similarity=0.205  Sum_probs=285.9

Q ss_pred             EEEecccCCCCCceEEee-CceEEEcCCCC--CCeEEEEEEe-------------cCc-CCeeeeCCCceEEEcCCeEEE
Q psy15127         29 VSISGDPGFDSRRSRSIF-GSVLGARGALS--DDQWKLIAKE-------------ALI-KPFPISEPSDATVLSGSVVEF   91 (633)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~-~~~L~i~~v~~--~G~Y~C~a~~-------------v~~-~p~~~~~~~~~~~~~G~~~~L   91 (633)
                      |..+|.+...+.++.+.. ++.|.|.+++.  +|.|+|.|.|             +.. ++.+...|....+.+|+.++|
T Consensus       144 W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~G~~~~l  223 (642)
T 1e07_A          144 WWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNL  223 (642)
T ss_pred             EEECCeECCCCCceEEcCCCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCCCcEEecCCcccccCCEEEE
Confidence            444455555556665543 67899999998  9999999998             222 222344556677899999999


Q ss_pred             EEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceE--EEEEEEEEEeecccccc-CC
Q psy15127         92 VCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSI--SLRASLTVHLLRDDFRA-EP  168 (633)
Q Consensus        92 ~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~--s~~~~l~V~~~~p~~~~-~~  168 (633)
                      .|.+.+.|.+.++|+++|..+..       +..|.|.+++.+|+|.|+|.|.|..|..  +..+.|.|..+++...+ .+
T Consensus       224 ~C~~~g~p~~~i~W~~~g~~i~~-------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~  296 (642)
T 1e07_A          224 SCHAASNPPAQYSWFVNGTFQQS-------TQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSN  296 (642)
T ss_pred             EEEcCCCCCcEEEEEECCeEccc-------CCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEEcC
Confidence            99999999999999999987743       3579999999999999999999988764  34556777664332222 23


Q ss_pred             CceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEE----eeeEEEEeecCCCCCCc----
Q psy15127        169 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV----RPLYWNVARPRANLNPR----  240 (633)
Q Consensus       169 ~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~y~C~a~~~~~~~p~----  240 (633)
                      ....+..|+.+.|.|. ..+.| +.+.|+++|..+.......+......+.+..+    .|.|+|.|.|..+....    
T Consensus       297 ~~~~~~~g~~v~l~C~-~~~~p-~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~  374 (642)
T 1e07_A          297 NSNPVEDEDAVALTCE-PEIQN-TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVI  374 (642)
T ss_pred             CceeEecCCcEEEEEE-CCCCC-ccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEE
Confidence            3344556888999999 56665 69999999988865544443333444544433    58999999998764211    


Q ss_pred             ccc-------cccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEE
Q psy15127        241 YIG-------RKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFF  313 (633)
Q Consensus       241 ~~~-------~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  313 (633)
                      +..       ........+..|+.+.|.|.+.|.|.+.+.|+++|..+.             ....|.|.++..+|.|.|
T Consensus       375 l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~-------------~~~~L~i~~~~~~d~G~Y  441 (642)
T 1e07_A          375 LNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQ-------------HTQELFISNITEKNSGLY  441 (642)
T ss_pred             EEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcC-------------CCceEEEccCChhhCeEE
Confidence            100       111223456789999999999999999999999998653             234799999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEEEecccCCCc---------------------------eEEeCCCcccc--C------CCCCc
Q psy15127        314 VCSALSVAGSTTVRAFLQVREFCVLPKG---------------------------TFTLGQPNLAT--G------NSDLR  358 (633)
Q Consensus       314 ~C~a~n~~g~~~~~~~l~v~~~~~~p~p---------------------------~~~~~~~~~~~--g------~p~~~  358 (633)
                      +|.|.|..|....+..+.|......++|                           .+.|.......  +      .....
T Consensus       442 ~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~  521 (642)
T 1e07_A          442 TCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRT  521 (642)
T ss_pred             EEEEEcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECCCCCcEEEEEECCEeCCCCCcEEEcCCCcE
Confidence            9999999987765544433322122222                           22232111100  0      01124


Q ss_pred             eEEecccccCCEEEEEEEEcCCccee-EEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCCC
Q psy15127        359 RIACDLRETDSGLYTCTASSESGETS-WSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRG  437 (633)
Q Consensus       359 ~~i~~~~~~d~g~y~c~a~n~~g~~~-~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~  437 (633)
                      +.|.++..+|+|.|+|.|.|..|... ..+.|.|...|.....           .|..  ........+.|.+.....  
T Consensus       522 L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~-----------~~~~--~~v~~g~~~~l~C~~~g~--  586 (642)
T 1e07_A          522 LTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPII-----------SPPD--SSYLSGANLNLSCHSASN--  586 (642)
T ss_pred             EEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCccee-----------cCCc--eeEEcCCcEEEEEEeccC--
Confidence            67889999999999999999999764 4688988866543100           1111  222334567777775331  


Q ss_pred             CCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCC
Q psy15127        438 GGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPS  498 (633)
Q Consensus       438 ~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s  498 (633)
                          +..  .+.|...+..        ......+.|.++.+.+.+.|+|.|.|..|....+
T Consensus       587 ----p~p--~v~W~~~g~~--------i~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~s  633 (642)
T 1e07_A          587 ----PSP--QYSWRINGIP--------QQHTQVLFIAKITPNNNGTYACFVSNLATGRNNS  633 (642)
T ss_pred             ----CCC--eEEEEECCEE--------CccCceEEECcccccCCeEEEEEEEecccCccee
Confidence                111  3444444311        1123578999999999999999999999987544

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=3e-36  Score=339.47  Aligned_cols=430  Identities=21%  Similarity=0.264  Sum_probs=297.5

Q ss_pred             CCceEEeeCceEEEcCCCC--C-CeEEEEEEe----------------c-----CcCCeeeeCC--CceEEEcCCeEEEE
Q psy15127         39 SRRSRSIFGSVLGARGALS--D-DQWKLIAKE----------------A-----LIKPFPISEP--SDATVLSGSVVEFV   92 (633)
Q Consensus        39 ~~~~~~~~~~~L~i~~v~~--~-G~Y~C~a~~----------------v-----~~~p~~~~~~--~~~~~~~G~~~~L~   92 (633)
                      ..|+.+..+|+|.|.+++.  + |.|+|.+.+                +     ..+|.+...+  ....+.+|+.+.|.
T Consensus       190 ~~r~~~~~~g~L~I~~v~~~D~~g~Y~C~~~~~~~~~~~~s~~~~~l~v~~~~~~~~P~i~~~~~~~~~~v~~g~~v~L~  269 (816)
T 3dmk_A          190 DGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALL  269 (816)
T ss_dssp             TTTEEECTTSCEEESSCCGGGSSCEEEEEEEETTTCCEEECSBCEEEEEECCCSCCCCBCCGGGGEEEEEECTTSCEEEC
T ss_pred             CceEEEecCceEEEecCChhhccceeEEEEeeeeeeeeeecccccceEEeCCCCCCCCccccccCccceEEeCCCeEEEE
Confidence            4577788899999999999  7 999999986                0     0123332221  24578899999999


Q ss_pred             EEEeccCCCeEEEEeCCccCC------CCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEeecccccc
Q psy15127         93 CRVGGDPLPTILWRRDDGKMP------TGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRA  166 (633)
Q Consensus        93 C~~~~~p~p~i~W~~~~~~i~------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~  166 (633)
                      |.+.|.|.|.+.|+|++....      ........+++|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+ +.+..
T Consensus       270 C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~-~~~~~  348 (816)
T 3dmk_A          270 CPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP-LSAKI  348 (816)
T ss_dssp             CCCBCSSCCEEEEEEECTTSSCEEECCCSSSEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEE-EEEEE
T ss_pred             EEeeecCCCeEEEEeCCCCCccCcceecCCceEeccceEEECCCCHhHCEEEEEEEEcCCCceEEEEEEEEcCC-Cceee
Confidence            999999999999999654321      22223334679999999999999999999999999888899999887 67777


Q ss_pred             CCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEEeeeEEEEeecCCCCC--------
Q psy15127        167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLN--------  238 (633)
Q Consensus       167 ~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~a~~~~~~~--------  238 (633)
                      .+....+.+|+.+.|.|. ..+.|.+.+.|+++|..+.... ..+.+.+.....   .|.|+|.+.|..+..        
T Consensus       349 ~~~~~~v~~G~~v~l~C~-~~g~p~~~v~W~k~g~~~~~~~-~~L~i~~v~~~d---~G~Y~C~a~n~~g~~~~~~~l~v  423 (816)
T 3dmk_A          349 DPPTQTVDFGRPAVFTCQ-YTGNPIKTVSWMKDGKAIGHSE-SVLRIESVKKED---KGMYQCFVRNDRESAEASAELKL  423 (816)
T ss_dssp             ESSEEECCTTSCEEEEEE-EEEECCCEEEEEETTEECSCCS-SEEEESSCCGGG---CEEEEEEEECSSCEEEECCEEEC
T ss_pred             CCCceEecCCCCEEEEEE-EeccCCCEEEEEECCEECCCCC-CEEEEcCCCHHH---CEEEEEEEECCCCcEEEEEEEEE
Confidence            788888999999999999 5788999999999999886542 233333333322   589999999876521        


Q ss_pred             ------CcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccce-EEEccC----ceEEEcCCCC
Q psy15127        239 ------PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGH-LHVTQE----GTLRIQGVQK  307 (633)
Q Consensus       239 ------p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~-~~~~~~----~~l~i~~~~~  307 (633)
                            |.+.  .......+..|+.+.|.|.+.|.|.+.+.|+++|..+....  .... .....+    ..|.|.++..
T Consensus       424 ~~~~~~p~i~--~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~--~~~~~~~~~~~~~~~~~L~i~~v~~  499 (816)
T 3dmk_A          424 GGRFDPPVIR--QAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANND--RYQVGQYVTVNGDVVSYLNITSVHA  499 (816)
T ss_dssp             CCSSCCCEEE--EECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCT--TEEEEEEECTTSCEEEEEEESSCCT
T ss_pred             ccccCCCceE--ecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCC--CcccccEEecCCCcEEEEEEeeccc
Confidence                  1111  11222456789999999999999999999999998774211  1100 011112    2599999999


Q ss_pred             CCCeEEEEEEEeCCceeEEEEEEEEEecccC-----------------------CCceEEeCCCcccc--C-----CCCC
Q psy15127        308 EDAGFFVCSALSVAGSTTVRAFLQVREFCVL-----------------------PKGTFTLGQPNLAT--G-----NSDL  357 (633)
Q Consensus       308 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~-----------------------p~p~~~~~~~~~~~--g-----~p~~  357 (633)
                      +|+|.|+|.|.|..|....++.|.|...+..                       |.+.+.|.......  +     .+..
T Consensus       500 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~  579 (816)
T 3dmk_A          500 NDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNG  579 (816)
T ss_dssp             TTCEEEEEEEEETTEEEEEEEEEEECSSCEECCCCCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEECTTS
T ss_pred             cCCEEEEEEEEECCCeEEEEEEEEEecCCeeEccCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEecCC
Confidence            9999999999999999999999988754322                       22233332222111  0     0123


Q ss_pred             ceEEeccc-ccCCEEEEEEEEcCCcce-eEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCC
Q psy15127        358 RRIACDLR-ETDSGLYTCTASSESGET-SWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEP  435 (633)
Q Consensus       358 ~~~i~~~~-~~d~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~  435 (633)
                      .+.|.++. .+|+|.|+|.|.|..|.. +..+.+.|..+|...           +..+...  .......+.|.|.....
T Consensus       580 ~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~-----------~~~~~~~--~~~~G~~v~L~C~~~~~  646 (816)
T 3dmk_A          580 TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRII-----------PFAFEEG--PAQVGQYLTLHCSVPGG  646 (816)
T ss_dssp             EEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCB-----------CCCCCSS--CEESSCEEEEEEBCCCS
T ss_pred             eEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCccc-----------ccccccc--ccCCCCeEEEEEEEeCC
Confidence            45777887 589999999999999964 456677777655431           1111111  12346678888876531


Q ss_pred             CCCCCcceeEEEEEEEEecCCC----CeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCC
Q psy15127        436 RGGGVAPVIGYTVEYFSSDLQT----GWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPS  498 (633)
Q Consensus       436 ~~~~~~~i~~Y~v~~~~~~~~~----~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s  498 (633)
                      .    .+.   .+.|...+..-    .............++|.++.....+.|+|.|.|..|....+
T Consensus       647 ~----~~~---~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~  706 (816)
T 3dmk_A          647 D----LPL---NIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFT  706 (816)
T ss_dssp             S----SCC---EEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             C----CCC---EEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEE
Confidence            1    121   24444443211    12211112234679999999999999999999999987543

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=5.5e-37  Score=345.49  Aligned_cols=425  Identities=19%  Similarity=0.273  Sum_probs=292.4

Q ss_pred             eeCceEEEcCCCC--CCeEEEEEEe------------cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCc
Q psy15127         45 IFGSVLGARGALS--DDQWKLIAKE------------ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG  110 (633)
Q Consensus        45 ~~~~~L~i~~v~~--~G~Y~C~a~~------------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~  110 (633)
                      ..+++|.|.+++.  +|.|+|.|.|            +..+|.+...+....+.+|+.++|.|.+.+.|.+.++|+|+|.
T Consensus       303 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~  382 (816)
T 3dmk_A          303 QVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK  382 (816)
T ss_dssp             EETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTE
T ss_pred             eccceEEECCCCHhHCEEEEEEEEcCCCceEEEEEEEEcCCCceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCE
Confidence            3468999999998  9999999988            4556677777888889999999999999999999999999999


Q ss_pred             cCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEe--eccccccCCCceEEecCCcEEEEEeCCCC
Q psy15127        111 KMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHL--LRDDFRAEPKDTRVASGETALLECGPPKG  188 (633)
Q Consensus       111 ~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~--~~p~~~~~~~~~~~~~g~~~~l~C~~~~~  188 (633)
                      .+...      ++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|..  .+|.+...+....+.+|+.+.|.|. ..|
T Consensus       383 ~~~~~------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~-~~g  455 (816)
T 3dmk_A          383 AIGHS------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCV-AGG  455 (816)
T ss_dssp             ECSCC------SSEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEE-EEC
T ss_pred             ECCCC------CCEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEE-Eec
Confidence            88653      35899999999999999999999999887777777753  3366666777788999999999999 688


Q ss_pred             CCCCeEEEEECCEEeccCCCeeEEe----ccc---eeeeEE----EeeeEEEEeecCCCCCCcc---c-----cccccee
Q psy15127        189 QPEPTLHWKKNGQFIDLESSKSLDL----SRR---TLGWLR----VRPLYWNVARPRANLNPRY---I-----GRKMASL  249 (633)
Q Consensus       189 ~p~~~i~W~~~~~~~~~~~~~~~~~----~~~---~~~~~~----~~g~y~C~a~~~~~~~p~~---~-----~~~~~~~  249 (633)
                      .|.+.+.|+++|..+..........    ...   .+.+..    ..|.|+|.|.|..+.....   .     .......
T Consensus       456 ~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~  535 (816)
T 3dmk_A          456 NPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEK  535 (816)
T ss_dssp             SSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCEECCCCC
T ss_pred             CCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCeeEccCC
Confidence            9999999999999886554332211    111   122111    2489999999987632100   0     0011122


Q ss_pred             EEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCC-CCCCeEEEEEEEeCCcee-EEE
Q psy15127        250 LIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ-KEDAGFFVCSALSVAGST-TVR  327 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~-~~~  327 (633)
                      ..+..|+.+.|.|.+.|.|.+.+.|+++|..+.     ...+.....+++|.|.++. .+|+|.|+|.|.|..|.. +..
T Consensus       536 ~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~-----~~~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~  610 (816)
T 3dmk_A          536 KAIVAGETLIVTCPVAGYPIDSIVWERDNRALP-----INRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGS  610 (816)
T ss_dssp             EEEETTCCEEEECCEECSSEEEEEEEETTEESC-----CSTTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEE
T ss_pred             eEEecCCeEEEEEEecCCCCCEEEEEECCeEcc-----cCCceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeee
Confidence            455689999999999999999999999998774     2234455677899999998 589999999999999854 455


Q ss_pred             EEEEEEecccCC--------------------------CceEEeCCCcccc-----------CCCCCceEEecccccCCE
Q psy15127        328 AFLQVREFCVLP--------------------------KGTFTLGQPNLAT-----------GNSDLRRIACDLRETDSG  370 (633)
Q Consensus       328 ~~l~v~~~~~~p--------------------------~p~~~~~~~~~~~-----------g~p~~~~~i~~~~~~d~g  370 (633)
                      ..+.|...+...                          ++.+.|.......           +.....+.|.++..+|+|
T Consensus       611 ~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G  690 (816)
T 3dmk_A          611 LEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAG  690 (816)
T ss_dssp             EEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCE
T ss_pred             EEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCE
Confidence            666665432211                          1133332222111           111234588999999999


Q ss_pred             EEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEE
Q psy15127        371 LYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY  450 (633)
Q Consensus       371 ~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~  450 (633)
                      .|+|.|.|..|..+.++.|.|..+|...  ..........+....+.+.........+.|.......    +.. |.   
T Consensus       691 ~Y~C~a~N~~g~~~~~~~l~V~~~P~~~--~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~----~~~-~~---  760 (816)
T 3dmk_A          691 NFTCHARNLAGHQQFTTPLNVYVPPRWI--LEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDT----PGE-YK---  760 (816)
T ss_dssp             EEEEEEECSSCEEEEEEEECEEEEEEEE--ECCCCEEEETTCCEEEECEEEEESCCEEECCEECSSS----TTC-CB---
T ss_pred             EEEEEEEeCCccEEEEEEEEEEeCCcee--eecccceecCCCcEEEEEEEecCCCCeEEEEecCCCC----Ccc-cc---
Confidence            9999999999999989999988765420  0000000111111122222222233345554322110    000 00   


Q ss_pred             EEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCC
Q psy15127        451 FSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIP  497 (633)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~  497 (633)
                       .. .....    .......+.|.++...+.+.|+|.|.|.+|.+..
T Consensus       761 -~~-~~~~~----~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  801 (816)
T 3dmk_A          761 -DL-KKSDN----IRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLS  801 (816)
T ss_dssp             -CC-CCBTT----EEEETTEEEECSCCGGGCEEEEEEEECSSSSCEE
T ss_pred             -cc-ccCCC----EEecCCEEEECcCChhhCeEEEEEEEeCCCCCcE
Confidence             00 00000    1123457999999999999999999999998753

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=9.2e-36  Score=314.89  Aligned_cols=336  Identities=11%  Similarity=0.007  Sum_probs=219.7

Q ss_pred             eEEEcCCCC--CCeEEEEEEe----------cCcCCeeeeCC-CceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC
Q psy15127         49 VLGARGALS--DDQWKLIAKE----------ALIKPFPISEP-SDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG  115 (633)
Q Consensus        49 ~L~i~~v~~--~G~Y~C~a~~----------v~~~p~~~~~~-~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~  115 (633)
                      +|.|.+++.  +|.|+|.|.|          +...|.+...+ .......|+.+.|.|.+.|.|.|.|+|++++..+...
T Consensus       104 SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~v~v~~~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~  183 (527)
T 3qs9_E          104 SMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESC  183 (527)
T ss_dssp             EEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-----CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------
T ss_pred             EEEECcCChhhCeeEEEEEEeccccEEEEEEEEECCceeeccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCccc
Confidence            499999999  9999999998          12222222221 2233456788899999999999999999988765321


Q ss_pred             CeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEE-EEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeE
Q psy15127        116 RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLR-ASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTL  194 (633)
Q Consensus       116 ~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~-~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i  194 (633)
                      .......-......++..|+|.|+|.|.|..|..... +.|.|... |.+  .+....+.+|+.+.|.|.+..+.|.+.|
T Consensus       184 ~~~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~-p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i  260 (527)
T 3qs9_E          184 KEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQT-PQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGL  260 (527)
T ss_dssp             ------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSC-CCC--SCCEEEECTTSCEEEEEEEEESSSCCCE
T ss_pred             cccCCcEEEEeeeeccccCCEEEEEEEEeCCCcccceEEEEEEecc-Ccc--CCCceEEeCCCeEEEEEEEccCCCCeEE
Confidence            1111111122233456899999999999999985443 77777766 444  6667889999999999995348999999


Q ss_pred             EEEECCEEeccCCCeeE--------EeccceeeeEE----EeeeEEEEeecCCC--------CCCcccccccceeEEecC
Q psy15127        195 HWKKNGQFIDLESSKSL--------DLSRRTLGWLR----VRPLYWNVARPRAN--------LNPRYIGRKMASLLIWNH  254 (633)
Q Consensus       195 ~W~~~~~~~~~~~~~~~--------~~~~~~~~~~~----~~g~y~C~a~~~~~--------~~p~~~~~~~~~~~~~~~  254 (633)
                      .|++++..+........        ......|.+..    ..|.|+|.|.|...        ..|.+..........+..
T Consensus       261 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~L~V~~~p~i~~~~~~~~~~v~~  340 (527)
T 3qs9_E          261 TWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQ  340 (527)
T ss_dssp             EEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTEEEEEEEEEEC--CEEECCCSCCEECCCT
T ss_pred             EEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeCCCceEEEEEEccCccccccCcccEEEcC
Confidence            99999987654321110        00111122222    24899999998611        112111111122355678


Q ss_pred             CceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEe
Q psy15127        255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE  334 (633)
Q Consensus       255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  334 (633)
                      |+.+.|.|.+.|+|.|.+.|+|+|..+.....      .......|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus       341 G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~------~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~  414 (527)
T 3qs9_E          341 YEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQK------GLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRR  414 (527)
T ss_dssp             TCCCCEEEEEEEESCCEEEEEETTEEEECBCC------BCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--C
T ss_pred             CCeEEEEEEEEecCCCEEEEEECCEECcCCcc------cccCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEec
Confidence            99999999999999999999999998853211      112456899999999999999999999999999998888875


Q ss_pred             cc----------------cCCCceEEeCCCcccc---------------------CCCCCceEEecccccCCEEEEEEEE
Q psy15127        335 FC----------------VLPKGTFTLGQPNLAT---------------------GNSDLRRIACDLRETDSGLYTCTAS  377 (633)
Q Consensus       335 ~~----------------~~p~p~~~~~~~~~~~---------------------g~p~~~~~i~~~~~~d~g~y~c~a~  377 (633)
                      .|                ..|+|.+.|.......                     |.......+.-...+|+|.|+|.|.
T Consensus       415 ~P~i~~~~~~~~l~C~a~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C~A~  494 (527)
T 3qs9_E          415 KPQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAY  494 (527)
T ss_dssp             CCEEEECCCCE---EEEECSSCCEEEEECCC-----CCCCCCCCEEEC---------CEEEEECCCCCSSCSCEEEEEEE
T ss_pred             CCeEEEeCCCCEEEEEEEEEcCCeEEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEEcCCCEEEEEEEE
Confidence            43                3466777774322110                     0001111233333569999999999


Q ss_pred             cCCcceeEEEEEEeec
Q psy15127        378 SESGETSWSASLSVEP  393 (633)
Q Consensus       378 n~~g~~~~~~~l~v~~  393 (633)
                      |..|..+..+.|.|.+
T Consensus       495 N~~G~~~~~~~L~V~~  510 (527)
T 3qs9_E          495 NSLGTSCETILLNSPG  510 (527)
T ss_dssp             CSSCEEEEEEEC----
T ss_pred             eCCCCceeEEEEecCC
Confidence            9999999999987754

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=100.00  E-value=5.5e-35  Score=323.98  Aligned_cols=416  Identities=14%  Similarity=0.098  Sum_probs=286.2

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCC-CCeEEEEEEEeCCceEEEEEEEEEEe----e
Q psy15127         86 GSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQ-DEGLYICDVENLVGSISLRASLTVHL----L  160 (633)
Q Consensus        86 G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~-d~G~Y~C~~~n~~g~~s~~~~l~V~~----~  160 (633)
                      +..+.|.|.+.|.|.|.+.|.|+|..+....     ...|.|..+... .++.|.|.+.+..|..... .+.+..    .
T Consensus        91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~-----~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~-~v~~~~~~~~~  164 (731)
T 2v5y_A           91 PGLLNVYVKVNNGPLGNPIWNISGDPTRTWN-----RAELAISTFWPNFYQVIFEVITSGHQGYLAID-EVKVLGHPCTR  164 (731)
T ss_dssp             SEEEEEEEEETTCCCCSEEEEECCCCCSSCE-----EEEEEECCCTTSCEEEEEEEEECSSCCEEEEC-CBEEESSCCSS
T ss_pred             cceEEEEEecCCCCccceeEEEeCCcCCcee-----EEEEEEeecCCCceEEEEEEEecCCceEEEEe-eEEeeeccccc
Confidence            4589999999999999999999998764322     235666655333 3588899887777764322 222222    2


Q ss_pred             ccccccCCCceEEecCCcEEEEEeCCCCCCCCeEE-EE--ECCEEeccCCCeeEEeccceeeeEEEeeeEEEEeecCCCC
Q psy15127        161 RDDFRAEPKDTRVASGETALLECGPPKGQPEPTLH-WK--KNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANL  237 (633)
Q Consensus       161 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~-W~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~a~~~~~~  237 (633)
                      +|.+. .+.+..+.+|+++.|.|. +.|.|.+.+. |+  ++|..+.....                             
T Consensus       165 ~p~~~-~~~~~~v~~G~~v~l~C~-~~g~P~p~i~~W~~~~~g~~l~~~~~-----------------------------  213 (731)
T 2v5y_A          165 TPHFL-RIQNVEVNAGQFATFQCS-AIGRTVAGDRLWLQGIDVRDAPLKEI-----------------------------  213 (731)
T ss_dssp             SCEEC-CCCCEEEETTSCEEEEEE-EESCCCTTCEEEEEESSSCCEEEEEE-----------------------------
T ss_pred             ccccc-cccceEEeCCCcEEEEEE-eCCCCCCceeEEEecCCCccccccce-----------------------------
Confidence            25554 566788999999999999 6888888777 66  45543321000                             


Q ss_pred             CCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEE
Q psy15127        238 NPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA  317 (633)
Q Consensus       238 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  317 (633)
                                                               ..+      ...+    ..++|.|.++...|.|.|+|.|
T Consensus       214 -----------------------------------------~~~------~~~~----~~~~l~I~~~~~~d~g~Y~c~A  242 (731)
T 2v5y_A          214 -----------------------------------------KVT------SSRR----FIASFNVVNTTKRDAGKYRCMI  242 (731)
T ss_dssp             -----------------------------------------EEC------CSSE----EEEEEEECSCCTTTCEEEEEEE
T ss_pred             -----------------------------------------EEe------cccc----ceEEEEEcccccccCeEEEEEE
Confidence                                                     000      0000    1258999999999999999999


Q ss_pred             EeCCce-eEEEEEEEEEecccCCCce-----------EEeCCCccccCCC----------------------CCceEEec
Q psy15127        318 LSVAGS-TTVRAFLQVREFCVLPKGT-----------FTLGQPNLATGNS----------------------DLRRIACD  363 (633)
Q Consensus       318 ~n~~g~-~~~~~~l~v~~~~~~p~p~-----------~~~~~~~~~~g~p----------------------~~~~~i~~  363 (633)
                      .|..|. .+..+.|.|...+..|.+.           +.|.......+.+                      ...+.+.+
T Consensus       243 ~n~~G~~~s~~~~l~V~~~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~i~~  322 (731)
T 2v5y_A          243 RTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGH  322 (731)
T ss_dssp             EETTEEEECCCEEEEEECCCCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSCEEEEECCSSEEEECS
T ss_pred             ECCCCCcceeeEEEEEecCCCCCCCcceeccCCceEEEEeCCcccCCCCccEEEEEEEEECCCCceEEeccCcceEEEeC
Confidence            999998 6777888888766654331           2333221111111                      13347788


Q ss_pred             ccccCCEEEEEEEE--cCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCc
Q psy15127        364 LRETDSGLYTCTAS--SESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVA  441 (633)
Q Consensus       364 ~~~~d~g~y~c~a~--n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~  441 (633)
                      |...+.|.|+|.|.  |..|....+..+.+...+.           .++.+|..+.+...+.+++.|+|+++..... ++
T Consensus       323 L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~-----------~p~~~P~~~~~~~~~~~sv~l~W~~p~~~~~-~~  390 (731)
T 2v5y_A          323 LDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCA-----------DPMRGPRKLEVVEVKSRQITIRWEPFGYNVT-RC  390 (731)
T ss_dssp             CCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCC-----------CCSCCCEEEEEEEECSSCEEEEEECCCHHHH-CS
T ss_pred             CCCCCEEEEEEEEEecCCCccccCCCcEEeeecCC-----------CCCCCCceeEEEeccCCeEEEEEECCCcccc-cc
Confidence            99999999999999  9999876444444443322           2346677778888899999999999864311 25


Q ss_pred             ceeEEEEEEEEecCCCC--eEE--EEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCceeecCCCCCCCcch
Q psy15127        442 PVIGYTVEYFSSDLQTG--WVV--AAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHL  517 (633)
Q Consensus       442 ~i~~Y~v~~~~~~~~~~--~~~--~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~~p~~~~~~  517 (633)
                      .+.+|.|+|+.......  |..  .........++|.+|.|++.|.|+|+|.|..|.|+ |... .++|.+.+|..++..
T Consensus       391 ~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S~~~-~~~T~~~~P~~p~~~  468 (731)
T 2v5y_A          391 HSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQEL-IVQTDEDLPGAVPTE  468 (731)
T ss_dssp             SSCEEEEEEEEESSSSEEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-CCCE-EEECCCCCCCCCCTT
T ss_pred             eeeeEEEEEEEccCCCCccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-CceE-EEEccCCCCCCCCcc
Confidence            67899999998753221  111  11223457899999999999999999999999985 6554 578888888887643


Q ss_pred             HHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeec-cceeEe
Q psy15127        518 LDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEK-YNMATV  596 (633)
Q Consensus       518 ~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~-~~~~~~  596 (633)
                      .           +   .... +.++|.|+|++|        ...+|.|++| .|+|+.......     .|.. .....+
T Consensus       469 ~-----------~---~~~~-~~~si~l~W~~P--------~~~~g~i~~Y-~V~~~~~~~~~~-----~~~~~~~~~~~  519 (731)
T 2v5y_A          469 S-----------I---QGST-FEEKIFLQWREP--------TQTYGVITLY-EITYKAVSSFDP-----EIDLSNQSGRV  519 (731)
T ss_dssp             T-----------C---EEEE-ETTEEEEECCCC--------SCCSSCCCEE-EEEEEEEEECC--------CCCCCEEEE
T ss_pred             e-----------E---Eeee-cCCeEEEEEcCC--------CCCCCCccce-EEEEEECcCCCc-----cccccCcceEE
Confidence            0           0   2222 478999999965        4568899999 999988754321     0110 011223


Q ss_pred             ecCCccceEEeeccccceeEEEEEeccccccccccC
Q psy15127        597 MNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       597 ~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s  632 (633)
                      ...+..++++|.+|+|++.|.|+|+|.|..|.|++|
T Consensus       520 ~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s  555 (731)
T 2v5y_A          520 SKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPA  555 (731)
T ss_dssp             EEETTCCEEEECSCCTTEEEEEEEEEEETTEEEEEE
T ss_pred             eecCCcceEEecCCCCCCEEEEEEEEEeCCccCCCc
Confidence            345668899999999999999999999999999986

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=2.1e-34  Score=294.50  Aligned_cols=316  Identities=26%  Similarity=0.371  Sum_probs=230.5

Q ss_pred             cCCeeeeCCCceEE---EcCCeEEEEEEEeccCCCeEEEEeCCccCCCC--CeEEcccceEEEccC-CCCCCeEEEEEEE
Q psy15127         70 IKPFPISEPSDATV---LSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG--RAKILDDRSLQIENV-GPQDEGLYICDVE  143 (633)
Q Consensus        70 ~~p~~~~~~~~~~~---~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~--~~~~~~~~~L~i~~v-~~~d~G~Y~C~~~  143 (633)
                      .+|.|...|.+..+   .+|+.+.|.|.+.|.|.|.|+|+|+|..+..+  ......++.|.|.++ +.+|+|.|+|.|.
T Consensus         4 ~~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~g~l~i~~~~~~~D~G~Y~C~A~   83 (384)
T 3kld_A            4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIAT   83 (384)
T ss_dssp             EEEEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC----CEEEETTEEEEESCCHHHHCEEEEEEEE
T ss_pred             CCCEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCCCCccEEEECCEEEEcCCCCcccCEEEEEEEE
Confidence            35889999988876   58899999999999999999999999988643  233445677888776 7889999999999


Q ss_pred             eCCceE-EEEEEEEEEeeccccc-cCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeE
Q psy15127        144 NLVGSI-SLRASLTVHLLRDDFR-AEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWL  221 (633)
Q Consensus       144 n~~g~~-s~~~~l~V~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~  221 (633)
                      |..|.. +..+.|.|... +.+. .......+.+|+.+.|.|....+.|.+.+.|++++..+..............+.+.
T Consensus        84 N~~G~~~s~~~~l~v~~~-~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~L~I~  162 (384)
T 3kld_A           84 NSFGTIVSREAKLQFAYL-ENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIA  162 (384)
T ss_dssp             ETTEEEECCCEEEEEEEE-CCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTTCCEEES
T ss_pred             cCcccEEecceEEEEecc-cccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCCCcEEEe
Confidence            999874 45677777776 4333 33455788999999999986566778899999999887654444333333344433


Q ss_pred             EE----eeeEEEEeecCCCCC-----Cc-ccc--------------cccceeEEecCCceEEEEEEEeeecCCeeEEEEC
Q psy15127        222 RV----RPLYWNVARPRANLN-----PR-YIG--------------RKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQE  277 (633)
Q Consensus       222 ~~----~g~y~C~a~~~~~~~-----p~-~~~--------------~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~  277 (633)
                      .+    .|.|+|.|.|..+..     +. +..              ........+..|+.+.|.|.+.|.|.|.+.|+++
T Consensus       163 ~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~  242 (384)
T 3kld_A          163 KVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRA  242 (384)
T ss_dssp             SCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEET
T ss_pred             ecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeC
Confidence            22    489999999976521     10 000              0012234567899999999999999999999995


Q ss_pred             CE-EEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEeccc-------------------
Q psy15127        278 GS-QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCV-------------------  337 (633)
Q Consensus       278 g~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~-------------------  337 (633)
                      +. .+.     . .......++.|.|.++..+|+|.|+|.|.|..|.......|.|...+.                   
T Consensus       243 ~~~~~~-----~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~  316 (384)
T 3kld_A          243 DGKPIA-----R-KARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWE  316 (384)
T ss_dssp             TCCCCC-----T-TCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEE
T ss_pred             CCcccc-----c-cceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccCCCceEecCCCCEEEE
Confidence            43 332     1 112233466899999999999999999999999998888888875322                   


Q ss_pred             -----CCCceEEeCCCccccC-C-----CCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEee
Q psy15127        338 -----LPKGTFTLGQPNLATG-N-----SDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVE  392 (633)
Q Consensus       338 -----~p~p~~~~~~~~~~~g-~-----p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~  392 (633)
                           .|.|.+.|........ .     ....+.|..+..+|+|.|+|.|.|..|....++.|.|.
T Consensus       317 C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~  382 (384)
T 3kld_A          317 CKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI  382 (384)
T ss_dssp             CEEEEESCCEEEEEETTEECCCBTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eECCccCCCeEEEEECCEECCCCccEEEeCCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence                 2344455533222110 0     11245788999999999999999999999999999885

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=4.9e-35  Score=312.41  Aligned_cols=348  Identities=11%  Similarity=0.004  Sum_probs=242.9

Q ss_pred             eeCceEEEcCCCC--CCeEEEEEEe---------cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEe-CCccC
Q psy15127         45 IFGSVLGARGALS--DDQWKLIAKE---------ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRR-DDGKM  112 (633)
Q Consensus        45 ~~~~~L~i~~v~~--~G~Y~C~a~~---------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~-~~~~i  112 (633)
                      ..+++|.|.+++.  +|.|+|.|.|         |..+|.+...+....+.+|+.++|.|.+.+.+.+.++|++ +|..+
T Consensus        77 ~~~~~L~I~~~~~~D~G~Y~C~a~ng~~~~~~l~V~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l  156 (524)
T 2ec8_A           77 NKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPL  156 (524)
T ss_dssp             ECSSEEEESSCCSTTCEEEEEEETTSCEEEEEEECCCSSCSBCCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCC
T ss_pred             CccceEEEcccchhhCEEEEEeecCCcceEEEEEECCCCcccccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCc
Confidence            4568899999998  9999999955         4555665577778889999999999999887778999998 78877


Q ss_pred             CCCC-eEEcccceEEEccCCCCCCe-EEEEEEEeCCceE-EEEEEEEEE---eeccccccCCCceEEecCCcEEEEEeCC
Q psy15127        113 PTGR-AKILDDRSLQIENVGPQDEG-LYICDVENLVGSI-SLRASLTVH---LLRDDFRAEPKDTRVASGETALLECGPP  186 (633)
Q Consensus       113 ~~~~-~~~~~~~~L~i~~v~~~d~G-~Y~C~~~n~~g~~-s~~~~l~V~---~~~p~~~~~~~~~~~~~g~~~~l~C~~~  186 (633)
                      ..+. .....++.|.|.+++.+|+| .|+|.|.|..+.. +..+.|.|.   ..+|.+...+....+.+|+.+.|.|. .
T Consensus       157 ~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~-~  235 (524)
T 2ec8_A          157 PKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCT-I  235 (524)
T ss_dssp             CSSCEEEEETTTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEE-E
T ss_pred             CCCCceeECCCccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEE-E
Confidence            6543 34445779999999999999 9999999886664 457888887   23377878888889999999999999 4


Q ss_pred             CCCCCCe-EEEEECCEEe--ccCCCeeE-----EeccceeeeEE----EeeeEEEEeecCCCCC-----------Ccccc
Q psy15127        187 KGQPEPT-LHWKKNGQFI--DLESSKSL-----DLSRRTLGWLR----VRPLYWNVARPRANLN-----------PRYIG  243 (633)
Q Consensus       187 ~~~p~~~-i~W~~~~~~~--~~~~~~~~-----~~~~~~~~~~~----~~g~y~C~a~~~~~~~-----------p~~~~  243 (633)
                      .+.|.+. +.|++++..+  .......+     ......+.+..    ..|.|+|.|.|..+..           |.+..
T Consensus       236 ~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~  315 (524)
T 2ec8_A          236 KDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINI  315 (524)
T ss_dssp             EESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEE
T ss_pred             ecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEe
Confidence            6778775 9999999873  22111111     11112222221    2489999999987632           21111


Q ss_pred             cc-cceeEEecCCceEEEEEEEeeecCCe-eEEEECCEEEEeccCCccceEEEc-------cCceEEEcCCCCCCCeEEE
Q psy15127        244 RK-MASLLIWNHPRVNRLSCFAEGSPLPS-VFWTQEGSQVLMFPGNAYGHLHVT-------QEGTLRIQGVQKEDAGFFV  314 (633)
Q Consensus       244 ~~-~~~~~~~~~g~~~~l~C~~~g~p~~~-v~W~~~g~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~  314 (633)
                      .. ......+..|+.+.|.|.+.|.|.|. +.|+++|..+....    .+....       ....|.|.++..+|+|.|+
T Consensus       316 ~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~----~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  391 (524)
T 2ec8_A          316 FPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKW----EDYPKSENESNIRYVSELHLTRLKGTEGGTYT  391 (524)
T ss_dssp             EESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSB----CCEESCCSSSCCEEEEEEEECSCCGGGCEEEE
T ss_pred             ecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCc----cceeEEccCCCceeEEEEEEeecCcccCeEEE
Confidence            11 12346678899999999999999998 99999998764211    122211       1247999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEEEecc------------------cCCCceEEeCCCcccc---------CC---------CCCc
Q psy15127        315 CSALSVAGSTTVRAFLQVREFC------------------VLPKGTFTLGQPNLAT---------GN---------SDLR  358 (633)
Q Consensus       315 C~a~n~~g~~~~~~~l~v~~~~------------------~~p~p~~~~~~~~~~~---------g~---------p~~~  358 (633)
                      |.|.|..|..+.++.|.|...|                  ..|+|.+.|.......         .+         ....
T Consensus       392 C~a~N~~g~~~~~~~l~V~~~P~i~~~~~~~~g~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  471 (524)
T 2ec8_A          392 FLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGK  471 (524)
T ss_dssp             EEEECSSCEEEEEEEEEECEEEEEEEEECCSSSCEEEEEEEESCCEEECCCC----------CCCCCCCCCCC-CCSSSC
T ss_pred             EEEEecCceEEEEEEEEEecCCeEeecccCcCcEEEEEEEeecCCEEEEEECCCcccccccccCCCCceeeeeccCCCCc
Confidence            9999999999999888887543                  3467788887653211         00         1111


Q ss_pred             eE----EecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCC
Q psy15127        359 RI----ACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGP  397 (633)
Q Consensus       359 ~~----i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~  397 (633)
                      +.    +.....+|+|.|+|.|.|..|..+..+.|.|.+.+..
T Consensus       472 ~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~e~~~~  514 (524)
T 2ec8_A          472 LVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKE  514 (524)
T ss_dssp             EEEEEEECCCSCCC-----CEEECSSCEEECCCCCCC------
T ss_pred             ceEEEEEEEEEccCCEEEEEEEEcCCCceEEEEEEEEecCCHH
Confidence            22    3333469999999999999999999999999876543

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=2.2e-34  Score=296.47  Aligned_cols=318  Identities=12%  Similarity=0.076  Sum_probs=200.1

Q ss_pred             eeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcc---cceEEEccCCCCCCeEEEEEEEeCCceE
Q psy15127         73 FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD---DRSLQIENVGPQDEGLYICDVENLVGSI  149 (633)
Q Consensus        73 ~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n~~g~~  149 (633)
                      .++..|..+.+.+|+++.|.|.+.+.|.+.|.|++++..+.........   ...|.|.+++.+|+|.|+|.|.|..|..
T Consensus        50 ~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~  129 (423)
T 3qs7_E           50 GTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNY  129 (423)
T ss_dssp             ------CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEE
T ss_pred             cceeccccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcE
Confidence            4455566889999999999999999999999999998776542211111   1369999999999999999999999998


Q ss_pred             EEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCC---eeEEeccceeeeEEEeee
Q psy15127        150 SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS---KSLDLSRRTLGWLRVRPL  226 (633)
Q Consensus       150 s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~  226 (633)
                      +..+.|.|..+ |.+. ......+..|+.+.|.|. +.|.|.|.|.|++++..+.....   ..+......+ .....|.
T Consensus       130 ~~~~~l~V~~~-p~~~-~~~p~~~~~~~~~~L~C~-a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l-~~~d~G~  205 (423)
T 3qs7_E          130 TILFTVSIRNT-LLYT-LRRPYFRKMENQDALVCI-SESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVL-HELFGTD  205 (423)
T ss_dssp             EEEEEEEEC------C-EEEEEEEECSSSSCEEEE-EEESSCCEEEEEEC-------------CEEECCSEE-CCCCSSC
T ss_pred             EEEEEEEEecC-cccc-ccCCcEeccCCceEEEEE-EeeecCCeEEEEECCCCCccccccccccccccceEE-ecccCeE
Confidence            88888988865 4331 122234556888999999 68999999999998875532111   1111111111 1234689


Q ss_pred             EEEEeecCCCCCCc--c------cccccceeEEecCCceEEEEEEEee-ecCCeeEEEECCEEEEeccCCccceE----E
Q psy15127        227 YWNVARPRANLNPR--Y------IGRKMASLLIWNHPRVNRLSCFAEG-SPLPSVFWTQEGSQVLMFPGNAYGHL----H  293 (633)
Q Consensus       227 y~C~a~~~~~~~p~--~------~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~----~  293 (633)
                      |+|.|.|..+....  +      ..........+.+|+.+.|.|.+.| .|.+.+.|+++|..+...........    .
T Consensus       206 Y~C~A~N~~G~~~~~~~~l~V~~~p~~~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~  285 (423)
T 3qs7_E          206 IRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRT  285 (423)
T ss_dssp             EEEEEECSSCEEEEECEEEESSSCCCSSTTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTE
T ss_pred             EEEEEEcCCCCcceeeEEEEEecCCccCCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCce
Confidence            99999998774311  0      0011223456778999999999999 67799999999986531100000000    1


Q ss_pred             EccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEeccc--------------------------CCCceEEeCC
Q psy15127        294 VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCV--------------------------LPKGTFTLGQ  347 (633)
Q Consensus       294 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~--------------------------~p~p~~~~~~  347 (633)
                      ....+.|.|.++..+|+|.|+|.|.|.   .+..+.|.|...+.                          .|+|.+.|..
T Consensus       286 ~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k  362 (423)
T 3qs7_E          286 MIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF  362 (423)
T ss_dssp             EEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEE
T ss_pred             eEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEE
Confidence            223347999999999999999999997   66667777764221                          1223333332


Q ss_pred             CccccCCCC----CceEE--ecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCC
Q psy15127        348 PNLATGNSD----LRRIA--CDLRETDSGLYTCTASSESGETSWSASLSVEPRPGP  397 (633)
Q Consensus       348 ~~~~~g~p~----~~~~i--~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~  397 (633)
                      .........    ..+.+  .....+|+|.|+|.|.|..|..+.++.|.|...|..
T Consensus       363 ~g~~l~~~~~~~~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~~  418 (423)
T 3qs7_E          363 SRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKH  418 (423)
T ss_dssp             TTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC-------
T ss_pred             CCEECCCccccccCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCCcc
Confidence            222110000    12233  556678999999999999999999999999987655

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=1.4e-33  Score=290.83  Aligned_cols=314  Identities=25%  Similarity=0.356  Sum_probs=238.5

Q ss_pred             ccCCCCCCCCCCccccccceeeEEEEecccCC--CCCceEEeeCceEEEcCC-----CC--CCeEEEEEEe---------
Q psy15127          6 DTNHAHPMSSPRAEIEPATRTNRVSISGDPGF--DSRRSRSIFGSVLGARGA-----LS--DDQWKLIAKE---------   67 (633)
Q Consensus         6 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~L~i~~v-----~~--~G~Y~C~a~~---------   67 (633)
                      .+.|..-...|.+.|+|+       .+|.+..  ...+.....++.|.|.++     +.  +|.|+|.|.+         
T Consensus        40 ~L~C~~~~~~p~~~v~W~-------k~g~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~s~  112 (403)
T 3laf_A           40 LLNCSAESDRGVPVIKWK-------KDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISR  112 (403)
T ss_dssp             EECCEEECTTCCCEEEEE-------ETTEECCTTSCTTEEECTTSCEEECSCCCBTTBCSSCEEEEEEEECGGGCEEECC
T ss_pred             EEEEEcCCCCCCceEEEE-------ECCEECccCCcccEEEecCCcEEEeeeeccCCCCCcceEEEEEEEeCCCccEEEE
Confidence            334444344455667744       3444433  245666777889999988     43  9999999985         


Q ss_pred             -----cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCC----CCCeEEcccceEEEccCCCCCCeEE
Q psy15127         68 -----ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP----TGRAKILDDRSLQIENVGPQDEGLY  138 (633)
Q Consensus        68 -----v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~----~~~~~~~~~~~L~i~~v~~~d~G~Y  138 (633)
                           +..+|.+...+....+.+|+.+.|.|.+.+.|.+.++|+|++..+.    ..+.....++.|.|.+++.+|+|.|
T Consensus       113 ~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  192 (403)
T 3laf_A          113 TAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVY  192 (403)
T ss_dssp             CEEEEECCCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEECTTSCEEECSCCGGGCEEE
T ss_pred             EEEEEecCCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEEcCCceEEEcccccccCEEE
Confidence                 4557778888888999999999999999999999999999998873    2344555678999999999999999


Q ss_pred             EEEEEeCCce-EEEEEEEEEEeec-----cccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEE
Q psy15127        139 ICDVENLVGS-ISLRASLTVHLLR-----DDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLD  212 (633)
Q Consensus       139 ~C~~~n~~g~-~s~~~~l~V~~~~-----p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~  212 (633)
                      +|.+.|..+. .+..+.|.|...+     +.+...+....+.+|+.+.|.|. ..+.|.+.+.|++++..+.........
T Consensus       193 ~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~-~~~~p~~~~~W~~~~~~~~~~~~~~~~  271 (403)
T 3laf_A          193 RCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECC-VSGYPPPSFTWLRGEEVIQLRSKKYSL  271 (403)
T ss_dssp             EEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCE-EEEESCCEEEEEETTEECCCSSSSEEE
T ss_pred             EEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEE-cCCCCCCeEEEEECCeeccCCCceEEE
Confidence            9999998776 4456777777652     12344566778899999999999 578899999999999988765555444


Q ss_pred             eccceeeeEEE----eeeEEEEeecCCCCC-----------CcccccccceeEEecCCceEEEEEEEeeecCCeeEEEEC
Q psy15127        213 LSRRTLGWLRV----RPLYWNVARPRANLN-----------PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQE  277 (633)
Q Consensus       213 ~~~~~~~~~~~----~g~y~C~a~~~~~~~-----------p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~  277 (633)
                      .....+.+..+    .|.|+|.|.|..+..           |.+.  .......+..|+.++|.|.+.|.|.+.+.|+++
T Consensus       272 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~--~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~  349 (403)
T 3laf_A          272 LGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFL--NHPSNLYAYESMDIEFECAVSGKPVPTVNWMKN  349 (403)
T ss_dssp             ETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEE--ECCCCEECCTTCCEEECCEEEEESCCEEEEEET
T ss_pred             CCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEe--ecCcceEEecCCeEEEEEEEeeccCCEEEEEEC
Confidence            44444444333    489999999886632           1111  112234456789999999999999999999999


Q ss_pred             CEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEe
Q psy15127        278 GSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE  334 (633)
Q Consensus       278 g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  334 (633)
                      |..+.     ...+.....++.|.|.++..+|+|.|+|.|.|..|..+..+.|.|.+
T Consensus       350 g~~~~-----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  401 (403)
T 3laf_A          350 GDVVI-----PSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK  401 (403)
T ss_dssp             TEECC-----CSSSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCC
T ss_pred             CEECC-----CCCcEEEecCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeC
Confidence            98764     22344455677899999999999999999999999999999998864

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=3.5e-33  Score=286.31  Aligned_cols=319  Identities=22%  Similarity=0.320  Sum_probs=230.1

Q ss_pred             cCCeeeeCCCc-eEEEcCCeEEEEEEEeccCCCeEEEEe-CCccCCC--CCeEEcccceEEEccCCCCC------CeEEE
Q psy15127         70 IKPFPISEPSD-ATVLSGSVVEFVCRVGGDPLPTILWRR-DDGKMPT--GRAKILDDRSLQIENVGPQD------EGLYI  139 (633)
Q Consensus        70 ~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~p~p~i~W~~-~~~~i~~--~~~~~~~~~~L~i~~v~~~d------~G~Y~  139 (633)
                      .+|.|+..|.+ +.+.+|+.++|.|.+.|.|.|.|+|+| +|..+..  .......+++|.|.+++.+|      +|.|+
T Consensus         2 ~~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~   81 (388)
T 2v5m_A            2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYA   81 (388)
T ss_dssp             EEEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEE
T ss_pred             CCCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEcCCceEEecccChhhccccccCceEE
Confidence            46888888876 557899999999999999999999999 7877754  23345567899999999987      99999


Q ss_pred             EEEEeCCceE-EEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCC---CCeEEEEECCEEeccC----CCeeE
Q psy15127        140 CDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQP---EPTLHWKKNGQFIDLE----SSKSL  211 (633)
Q Consensus       140 C~~~n~~g~~-s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p---~~~i~W~~~~~~~~~~----~~~~~  211 (633)
                      |.|.|..|.. +..+.|.|..+ |.+...+....+.+|+.+.|.|.+ .+.+   .+.+.|++++..+...    .....
T Consensus        82 C~a~n~~g~~~s~~~~v~v~~~-p~~~~~~~~~~v~~G~~v~l~C~~-~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~  159 (388)
T 2v5m_A           82 CLARNQFGSIISRDVHVRAVVA-QYYEADVNKEHVIRGNSAVIKCLI-PSFVADFVEVVSWHTDEEENYFPGAEYDGKYL  159 (388)
T ss_dssp             EEEEETTEEEECCCEEEEEECC-CCCCCBCCCEEEETTSCEEECCBC-CTTTTTTEEEEEEEETTCCEECSSSCBTTTEE
T ss_pred             EEEEccCCeEEecceEEEEccc-cccccCccceeeecCCcEEEEEEC-cCCCCCCcceEEEEeCCCcccccccCCCCcEE
Confidence            9999998874 56778888777 777777778889999999999995 4443   3799999998776432    11222


Q ss_pred             EeccceeeeEEE----e-eeEEEEeecCCCCCC-------cccc------------cccceeEEecCCceEEEEEEEeee
Q psy15127        212 DLSRRTLGWLRV----R-PLYWNVARPRANLNP-------RYIG------------RKMASLLIWNHPRVNRLSCFAEGS  267 (633)
Q Consensus       212 ~~~~~~~~~~~~----~-g~y~C~a~~~~~~~p-------~~~~------------~~~~~~~~~~~g~~~~l~C~~~g~  267 (633)
                      ......+.+..+    . |.|+|.+.+..+...       .+..            ........+..|+.++|.|.+.|.
T Consensus       160 ~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~  239 (388)
T 2v5m_A          160 VLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGF  239 (388)
T ss_dssp             ECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEE
T ss_pred             EccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCC
Confidence            223333333222    4 899999988653210       0100            001122346678999999999999


Q ss_pred             cCCeeEEEECCEEEEec-cCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEeccc---------
Q psy15127        268 PLPSVFWTQEGSQVLMF-PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCV---------  337 (633)
Q Consensus       268 p~~~v~W~~~g~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~---------  337 (633)
                      |.+.+.|++++..+... ......+.. ..++.|.|.++..+|+|.|+|.|.|..|..+..+.|.|...+.         
T Consensus       240 p~p~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~  318 (388)
T 2v5m_A          240 PAPSFRWYKFIEGTTRKQAVVLNDRVK-QVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQT  318 (388)
T ss_dssp             SCCEEEEEEECTTSSCEEECCCSSSEE-EETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSEEE
T ss_pred             CCCEEEEEecCCCCcccccccccCcee-cccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccCCCcEE
Confidence            99999999975322100 000112222 2456899999999999999999999999998888888875321         


Q ss_pred             ---------------CCCceEEeCCCccccCCCCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEe
Q psy15127        338 ---------------LPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSV  391 (633)
Q Consensus       338 ---------------~p~p~~~~~~~~~~~g~p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v  391 (633)
                                     .|.|.+.|.............+.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus       319 v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          319 VDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             ECTTSCEEEEEEEEEECCCEEEEEETTEECSCCSSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             ecCCCCEEEEEEeccccCCeEEEEECCEECccCCCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence                           123334443333322233345689999999999999999999999988888876

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=1.5e-32  Score=283.11  Aligned_cols=320  Identities=26%  Similarity=0.339  Sum_probs=238.2

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEec-cCCCeEEEEeCCccCC---CCCeEEcccceEEEccC-----CCCCCeEEE
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGG-DPLPTILWRRDDGKMP---TGRAKILDDRSLQIENV-----GPQDEGLYI  139 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~-~p~p~i~W~~~~~~i~---~~~~~~~~~~~L~i~~v-----~~~d~G~Y~  139 (633)
                      .....+..+|.++.+.+|+.++|.|.+.+ .|.+.++|+|+|..+.   ..+.....++.|.|.++     +.+|+|.|+
T Consensus        19 ~~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~D~G~Y~   98 (403)
T 3laf_A           19 RRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQ   98 (403)
T ss_dssp             CCSSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEECTTSCEEECSCCCBTTBCSSCEEEE
T ss_pred             ceeEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEecCCcEEEeeeeccCCCCCcceEEE
Confidence            34567789999999999999999999976 5788999999999885   34566667788999888     677999999


Q ss_pred             EEEEeCCce--EEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCC--CeeEEecc
Q psy15127        140 CDVENLVGS--ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES--SKSLDLSR  215 (633)
Q Consensus       140 C~~~n~~g~--~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~--~~~~~~~~  215 (633)
                      |.+.+..+.  .+..+.|.|..+ +.+...+....+.+|+.+.|.|. ..+.|.+.+.|++++..+....  ........
T Consensus        99 C~~~~~~~~~~~s~~~~l~v~~p-~~~~~~~~~~~~~~G~~v~l~C~-~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~  176 (403)
T 3laf_A           99 CEASLGDSGSIISRTAKVMVAGP-LRFLSQTESITAFMGDTVLLKCE-VIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPS  176 (403)
T ss_dssp             EEEECGGGCEEECCCEEEEECCC-CEECSCCCCEEEETTSCEEECCC-EECSSCCEEEEEESSSBCCCCTTCCSEEECTT
T ss_pred             EEEEeCCCccEEEEEEEEEecCC-CccccCCCcEEEEcCCeEEEEEE-EcccCCCeEEEEECCEeccccCCceEEEEcCC
Confidence            999965433  355677777776 77777788889999999999999 5788999999999998775322  22222223


Q ss_pred             ceeeeEEE----eeeEEEEeecCCCCCCc----ccc------------cccceeEEecCCceEEEEEEEeeecCCeeEEE
Q psy15127        216 RTLGWLRV----RPLYWNVARPRANLNPR----YIG------------RKMASLLIWNHPRVNRLSCFAEGSPLPSVFWT  275 (633)
Q Consensus       216 ~~~~~~~~----~g~y~C~a~~~~~~~p~----~~~------------~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~  275 (633)
                      ..+.+..+    .|.|+|.+.|..+....    +..            ........+..|+.++|.|.+.|.|.+.+.|+
T Consensus       177 ~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~  256 (403)
T 3laf_A          177 GALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWL  256 (403)
T ss_dssp             SCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEE
T ss_pred             ceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEE
Confidence            33333322    48999999987653210    000            01122344668999999999999999999999


Q ss_pred             ECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEeccc------------------
Q psy15127        276 QEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCV------------------  337 (633)
Q Consensus       276 ~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~------------------  337 (633)
                      +++..+..    ...+.....++.|.|.++..+|+|.|+|.|.|..|..+..+.|.|...+.                  
T Consensus       257 ~~~~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l  332 (403)
T 3laf_A          257 RGEEVIQL----RSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEF  332 (403)
T ss_dssp             ETTEECCC----SSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEECCTTCCEEE
T ss_pred             ECCeeccC----CCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCcceEEecCCeEEE
Confidence            99987642    22344555677899999999999999999999999999888888875331                  


Q ss_pred             ------CCCceEEeCCCccccC-C------CCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecC
Q psy15127        338 ------LPKGTFTLGQPNLATG-N------SDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPR  394 (633)
Q Consensus       338 ------~p~p~~~~~~~~~~~g-~------p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~  394 (633)
                            .|.|.+.|........ .      ....+.|..+..+|+|.|+|.|.|..|..+.++.|.|..+
T Consensus       333 ~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P  402 (403)
T 3laf_A          333 ECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP  402 (403)
T ss_dssp             CCEEEEESCCEEEEEETTEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred             EEEEeeccCCEEEEEECCEECCCCCcEEEecCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCC
Confidence                  1223333332221110 0      1123578899999999999999999999999999998764

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=4.6e-33  Score=284.73  Aligned_cols=316  Identities=22%  Similarity=0.311  Sum_probs=231.0

Q ss_pred             CcCCeeeeCCCceEE---EcCCeEEEEEEEeccCCCeEEEEeCCccCCCC--CeEEcccceEEEccCCC-CCCeEEEEEE
Q psy15127         69 LIKPFPISEPSDATV---LSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG--RAKILDDRSLQIENVGP-QDEGLYICDV  142 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~---~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~--~~~~~~~~~L~i~~v~~-~d~G~Y~C~~  142 (633)
                      ..+|.|...|.+..+   .+|+.++|.|.+.|.|.+.++|+|+|..+...  ......++.|.|.++.. +|+|.|+|.|
T Consensus         2 ~~~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a   81 (382)
T 1cs6_A            2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVA   81 (382)
T ss_dssp             CEEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEE
T ss_pred             CCCCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEeeCCeEEEecccccccCEEEEEEE
Confidence            357899999998877   78999999999999999999999999988642  33444577999999997 9999999999


Q ss_pred             EeCCceE-EEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCC--eeEEeccceee
Q psy15127        143 ENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS--KSLDLSRRTLG  219 (633)
Q Consensus       143 ~n~~g~~-s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~~~  219 (633)
                      .|..|.. +..+.|.|...+......+....+.+|+.+.|.|.+..+.|.+.+.|++++..+.....  .........+.
T Consensus        82 ~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~  161 (382)
T 1cs6_A           82 TNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLY  161 (382)
T ss_dssp             EETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEE
T ss_pred             EcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCceEEE
Confidence            9998874 44678888777333333456678999999999999667788899999999876532221  11111223333


Q ss_pred             eEEE----eeeEEEEeecCCCCC-------C-ccc-------------ccccceeEEecCCceEEEEEEEeeecCCeeEE
Q psy15127        220 WLRV----RPLYWNVARPRANLN-------P-RYI-------------GRKMASLLIWNHPRVNRLSCFAEGSPLPSVFW  274 (633)
Q Consensus       220 ~~~~----~g~y~C~a~~~~~~~-------p-~~~-------------~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W  274 (633)
                      +..+    .|.|+|.+.+..+..       . .+.             .........+..|+.+.|.|.+.|.|.+.+.|
T Consensus       162 i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W  241 (382)
T 1cs6_A          162 IAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKW  241 (382)
T ss_dssp             ESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEE
T ss_pred             EEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEE
Confidence            3222    489999998876310       0 000             00112245567899999999999999999999


Q ss_pred             EECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEeccc-----------------
Q psy15127        275 TQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCV-----------------  337 (633)
Q Consensus       275 ~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~-----------------  337 (633)
                      ++++..+..        ........|.|.++..+|+|.|+|.|.|..|.....+.|.|...+.                 
T Consensus       242 ~~~~~~~~~--------~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~  313 (382)
T 1cs6_A          242 RKLDGSQTS--------KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLR  313 (382)
T ss_dssp             EECCSCCSC--------CCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEEETTCCEE
T ss_pred             EECCccccc--------EEecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCccEEcCCCeEE
Confidence            998875421        0112456899999999999999999999999998888888875322                 


Q ss_pred             -------CCCceEEeCCCccccCC------CCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEee
Q psy15127        338 -------LPKGTFTLGQPNLATGN------SDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVE  392 (633)
Q Consensus       338 -------~p~p~~~~~~~~~~~g~------p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~  392 (633)
                             .|.|.+.|.........      ....+.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus       314 l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          314 WSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             EECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEeeeecCCEEEEEECCEECCCCceEEEECCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence                   12333444322211110      01246888999999999999999999999999999885

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=100.00  E-value=1.9e-32  Score=303.58  Aligned_cols=435  Identities=17%  Similarity=0.194  Sum_probs=221.6

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEE-EE--eCCccCCCCCeEEcc----cceEEEccCCCCCCeEEEEEE
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTIL-WR--RDDGKMPTGRAKILD----DRSLQIENVGPQDEGLYICDV  142 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~-W~--~~~~~i~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~~  142 (633)
                      .+|.|. .+.++.+.+|++++|.|.+.|.|.|.+. |+  ++|..+.........    .+.|.|.++...|+|.|+|.|
T Consensus       164 ~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A  242 (731)
T 2v5y_A          164 RTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMI  242 (731)
T ss_dssp             SSCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEE
T ss_pred             cccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEE
Confidence            457776 6778999999999999999999999887 88  677766433222221    258999999999999999999


Q ss_pred             EeCCce-EEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCC--C-CCCCeEEEEECCEEeccCCCeeEEecccee
Q psy15127        143 ENLVGS-ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPK--G-QPEPTLHWKKNGQFIDLESSKSLDLSRRTL  218 (633)
Q Consensus       143 ~n~~g~-~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~--~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~  218 (633)
                      .|..|. .+..+.|.|..+ |.....|.... .....+.|.|....  + .+...+                        
T Consensus       243 ~n~~G~~~s~~~~l~V~~~-P~~~~~p~~~~-~~~~~v~l~w~~~~~~g~~~i~~Y------------------------  296 (731)
T 2v5y_A          243 RTEGGVGISNYAELVVKEP-PVPIAPPQLAS-VGATYLWIQLNANSINGDGPIVAR------------------------  296 (731)
T ss_dssp             EETTEEEECCCEEEEEECC-CCBSSCCEEEE-ECSSCEEEECCCSSBSSCSCCCEE------------------------
T ss_pred             ECCCCCcceeeEEEEEecC-CCCCCCcceec-cCCceEEEEeCCcccCCCCccEEE------------------------
Confidence            999998 777788999887 65444443332 23456666665211  1 010000                        


Q ss_pred             eeEEEeeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCc
Q psy15127        219 GWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG  298 (633)
Q Consensus       219 ~~~~~~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~  298 (633)
                                                                          .+.|...+.        ...........
T Consensus       297 ----------------------------------------------------~v~~~~~~~--------~~~~~~~~~~~  316 (731)
T 2v5y_A          297 ----------------------------------------------------EVEYCTASG--------SWNDRQPVDST  316 (731)
T ss_dssp             ----------------------------------------------------EEEEEESSS--------SCEEEEECCSS
T ss_pred             ----------------------------------------------------EEEEEECCC--------CceEEeccCcc
Confidence                                                                111211110        00011122345


Q ss_pred             eEEEcCCCCCCCeEEEEEEE--eCCceeEEEEEEEEEecccCC--Cc-------------eEEeCCCcccc---------
Q psy15127        299 TLRIQGVQKEDAGFFVCSAL--SVAGSTTVRAFLQVREFCVLP--KG-------------TFTLGQPNLAT---------  352 (633)
Q Consensus       299 ~l~i~~~~~~d~G~Y~C~a~--n~~g~~~~~~~l~v~~~~~~p--~p-------------~~~~~~~~~~~---------  352 (633)
                      .+.|.++...+...|.|.|.  |..|....+..+.+......|  +|             .+.|.+.....         
T Consensus       317 ~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~~~~~y~  396 (731)
T 2v5y_A          317 SYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLT  396 (731)
T ss_dssp             EEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEEEEECSSCEEEEEECCCHHHHCSSSCEEE
T ss_pred             eEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCceeEEEeccCCeEEEEEECCCcccccceeeeEE
Confidence            78999999888888999999  998876544333333222221  11             23344321100         


Q ss_pred             ------C---------------CCCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCC
Q psy15127        353 ------G---------------NSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPG  411 (633)
Q Consensus       353 ------g---------------~p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~  411 (633)
                            +               .....+.+.+|.....|.|++.|.|..|... +..+.+......            |+
T Consensus       397 v~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S~~~~~~T~~~~------------P~  463 (731)
T 2v5y_A          397 VHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQELIVQTDEDL------------PG  463 (731)
T ss_dssp             EEEEEESSSSEEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-CCCEEEECCCCC------------CC
T ss_pred             EEEEEccCCCCccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-CceEEEEccCCC------------CC
Confidence                  0               1123457889999999999999999999763 444555443322            33


Q ss_pred             CCC--CcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCC-------eEEEEEeeeeceEEEecCCCCCeE
Q psy15127        412 PPA--APVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTG-------WVVAAHRITSTSITVSDLKPDTSY  482 (633)
Q Consensus       412 ~p~--~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~-------~~~~~~~~~~~~~~i~~L~p~~~Y  482 (633)
                      +|.  .+... ...+++.|+|++|...   ++.+.+|.|+|+..+....       ..........+.++|.+|.|++.|
T Consensus       464 ~p~~~~~~~~-~~~~si~l~W~~P~~~---~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y  539 (731)
T 2v5y_A          464 AVPTESIQGS-TFEEKIFLQWREPTQT---YGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTY  539 (731)
T ss_dssp             CCCTTTCEEE-EETTEEEEECCCCSCC---SSCCCEEEEEEEEEEECC---CCCCCEEEEEEETTCCEEEECSCCTTEEE
T ss_pred             CCCcceEEee-ecCCeEEEEEcCCCCC---CCCccceEEEEEECcCCCccccccCcceEEeecCCcceEEecCCCCCCEE
Confidence            343  33333 2478999999998743   5789999999998653221       222223345678999999999999


Q ss_pred             EEEEEEEeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchh
Q psy15127        483 MFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEA  562 (633)
Q Consensus       483 ~~~v~a~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~  562 (633)
                      .|+|+|.|..|.|+++..  .++|...+|..|+....              .....+.++|.|+|.+|        ...+
T Consensus       540 ~~~V~A~n~~G~g~~s~~--~~~T~~~~P~~p~~~~~--------------~~~~~~~~si~l~W~pp--------~~~~  595 (731)
T 2v5y_A          540 SFTIRASTAKGFGPPATN--QFTTKISAPSMPAYELE--------------TPLNQTDNTVTVMLKPA--------HSRG  595 (731)
T ss_dssp             EEEEEEEETTEEEEEEEE--EEECCCCCCCC-------------------------------------------------
T ss_pred             EEEEEEEeCCccCCCccc--EEEcCCCCCCCCCcccc--------------cccccCCceEEEEEeCC--------CCCC
Confidence            999999999999998842  47787777777664310              12346789999999965        5778


Q ss_pred             hhhcceeEEEEEEcCCCcccce--e-------eeeeccce---------------------eEeecCCccceEEeecccc
Q psy15127        563 RARLGTKVVNLRELIPTASTAV--R-------ITWEKYNM---------------------ATVMNAATTTSYTVTHLRK  612 (633)
Q Consensus       563 ~~i~~y~~i~~~~~~~~~~~~~--~-------~~w~~~~~---------------------~~~~~~~~~~~~~i~~L~~  612 (633)
                      |.|++| .|+|+..........  .       ..|.....                     ..+........|.+.+|+|
T Consensus       596 g~I~~Y-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aa~~~p~~~~~~~~~~vg~~~~~~~~~n~~L~p  674 (731)
T 2v5y_A          596 APVSVY-QIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLP  674 (731)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CceEEE-EEEEEecCCCCCccccccccCcccccCHHHHhhcCCcceEEEEcChhhCcccCCEEECCCCeECCEECCCCCC
Confidence            999999 999987654321100  0       01111100                     0000000112344556999


Q ss_pred             ceeEEEEEeccccccccccCC
Q psy15127        613 FTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       613 ~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      ++.|.|+|+|++.+|.|..++
T Consensus       675 ~~~Y~i~v~A~s~~g~~~~~~  695 (731)
T 2v5y_A          675 YKSYRIYFQAASRANGETKID  695 (731)
T ss_dssp             ---------------------
T ss_pred             CCceEEEEEEEEecCCCcEee
Confidence            999999999999999998753

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=6.7e-33  Score=284.93  Aligned_cols=320  Identities=19%  Similarity=0.240  Sum_probs=228.3

Q ss_pred             cCcCCeeeeCCCceEEEcCCeEEEEEEEec-cCCCeEEEEeCCccCCCCC--e-EEcccceEEEccCCCCCCeEEEEEEE
Q psy15127         68 ALIKPFPISEPSDATVLSGSVVEFVCRVGG-DPLPTILWRRDDGKMPTGR--A-KILDDRSLQIENVGPQDEGLYICDVE  143 (633)
Q Consensus        68 v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~-~p~p~i~W~~~~~~i~~~~--~-~~~~~~~L~i~~v~~~d~G~Y~C~~~  143 (633)
                      +..+|.|...|.++.+.+|+.++|.|.+.+ .|.+.++|+|+|..+....  . ....+++|.|.+++.+|+|.|+|.|.
T Consensus         3 v~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   82 (395)
T 1bih_A            3 VDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAE   82 (395)
T ss_dssp             --CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEE
T ss_pred             cCCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEEEE
Confidence            356899999999999999999999999998 8899999999999886542  2 23346789999999999999999999


Q ss_pred             eCCceEE-EEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCE---EeccC---CCeeEEeccc
Q psy15127        144 NLVGSIS-LRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ---FIDLE---SSKSLDLSRR  216 (633)
Q Consensus       144 n~~g~~s-~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~---~~~~~---~~~~~~~~~~  216 (633)
                      |..|... ..+.|.|... +.+...+....+.+|+.+.|.|.+..+.|.+.+.|++++.   .....   ..........
T Consensus        83 n~~g~~~s~~~~l~v~~~-~~p~~~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (395)
T 1bih_A           83 TPAGVASSRVISFRKTYL-IASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG  161 (395)
T ss_dssp             ETTEEEECCCEEEEEEEE-ECCCCEEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTS
T ss_pred             eCCCeEEeEEEEEEEEEe-ecCCcCCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCC
Confidence            9888753 4466666654 2223344566778999999999966789999999999861   11111   1222223344


Q ss_pred             eeeeEEEe----e---eEEEEeecCCCCCCccc--------------------ccccceeEEecCCceEEEEEEEeeecC
Q psy15127        217 TLGWLRVR----P---LYWNVARPRANLNPRYI--------------------GRKMASLLIWNHPRVNRLSCFAEGSPL  269 (633)
Q Consensus       217 ~~~~~~~~----g---~y~C~a~~~~~~~p~~~--------------------~~~~~~~~~~~~g~~~~l~C~~~g~p~  269 (633)
                      .+.+..+.    |   .|+|.+.|..+......                    .........+..|+.+.|.|.+.|.|.
T Consensus       162 ~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~l~C~~~g~p~  241 (395)
T 1bih_A          162 NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPM  241 (395)
T ss_dssp             CEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEEEEEEEECSSC
T ss_pred             cEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCceecCCceEEECCCcEEEEEEeccCCC
Confidence            55555543    7   99999999876421110                    000123356778999999999999999


Q ss_pred             CeeEEEECCEEEEeccCCccceEEE---ccCceEEEcCCCCCCCeEEEEEEEeCCceeEE-EEEEEEEecccC-------
Q psy15127        270 PSVFWTQEGSQVLMFPGNAYGHLHV---TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV-RAFLQVREFCVL-------  338 (633)
Q Consensus       270 ~~v~W~~~g~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~~~~-------  338 (633)
                      +.+.|+++|..+.....   .++..   .....|.|.++..+|+|.|+|.|.|..|.... .+.|.|...|.+       
T Consensus       242 ~~i~W~~~g~~~~~~~~---~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~  318 (395)
T 1bih_A          242 GYPNYFKNGKDVNGNPE---DRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKV  318 (395)
T ss_dssp             CCCEEEETTEECCCCTT---SSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSE
T ss_pred             CeEEEEECCEEcCCCCc---eeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcc
Confidence            99999999987743221   22221   12237999999999999999999999998655 778887753221       


Q ss_pred             ------------------CCceEEeCCCccccCC-----CCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEe
Q psy15127        339 ------------------PKGTFTLGQPNLATGN-----SDLRRIACDLRETDSGLYTCTASSESGETSWSASLSV  391 (633)
Q Consensus       339 ------------------p~p~~~~~~~~~~~g~-----p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v  391 (633)
                                        |.|.+.|.........     ....+.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus       319 ~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          319 IVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             EEECTTSCEEEECEEEEESCCCCEEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eEecCCCeEEEEEEECcccCCeeEEEECCEECCCCceEEECCEEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence                              2222222221111100     0114578899999999999999999999988888876

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=1.9e-31  Score=288.76  Aligned_cols=340  Identities=16%  Similarity=0.160  Sum_probs=237.2

Q ss_pred             eEEEcCCCC--CCeEEEEEEe------------cCcCCeeeeCCCceEEEcCCeEEEEEEEecc-CCCeEEEEeCCccCC
Q psy15127         49 VLGARGALS--DDQWKLIAKE------------ALIKPFPISEPSDATVLSGSVVEFVCRVGGD-PLPTILWRRDDGKMP  113 (633)
Q Consensus        49 ~L~i~~v~~--~G~Y~C~a~~------------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~-p~p~i~W~~~~~~i~  113 (633)
                      +|.|.+++.  +|.|+|.|.+            +..+|.+...+....+.+|+.++|.|.+.+. +.+.+.|+|++....
T Consensus        76 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~  155 (585)
T 2ocw_A           76 VVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYP  155 (585)
T ss_pred             EEEECCCCcccCEEEEEEcccCCCCceEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCc
Confidence            599999998  9999999987            5667888888888999999999999999864 456799999886431


Q ss_pred             --------------CCCeEEcccc------eEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEeeccccccCCCceEE
Q psy15127        114 --------------TGRAKILDDR------SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRV  173 (633)
Q Consensus       114 --------------~~~~~~~~~~------~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~  173 (633)
                                    .++..+..++      .|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..++      |....+
T Consensus       156 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~------p~~~~~  229 (585)
T 2ocw_A          156 VLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPE------PELVYE  229 (585)
T ss_pred             eEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCC------CceeEE
Confidence                          2333333322      79999999999999999999999988889999998763      344567


Q ss_pred             ecCCcEEEEEeCCCCCCC-CeEEEE-ECCEE---eccC-------CCeeEEec----cc--eeeeEEE----eeeEEEEe
Q psy15127        174 ASGETALLECGPPKGQPE-PTLHWK-KNGQF---IDLE-------SSKSLDLS----RR--TLGWLRV----RPLYWNVA  231 (633)
Q Consensus       174 ~~g~~~~l~C~~~~~~p~-~~i~W~-~~~~~---~~~~-------~~~~~~~~----~~--~~~~~~~----~g~y~C~a  231 (633)
                      .+|+.+.|.|.+....|. +.+.|+ ++|..   +...       ....+...    ..  .+.+..+    .|.|+|.|
T Consensus       230 ~~G~~v~l~C~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a  309 (585)
T 2ocw_A          230 DLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGA  309 (585)
T ss_pred             cCCCcEEEEEEcCCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEE
Confidence            899999999995333333 689997 88731   1110       01111111    12  2333322    48999999


Q ss_pred             ecCCCCC-----Ccc--c------ccccceeEEecCCceEEEEEEEeeecCCee----EEEE--CCE--EEEeccC----
Q psy15127        232 RPRANLN-----PRY--I------GRKMASLLIWNHPRVNRLSCFAEGSPLPSV----FWTQ--EGS--QVLMFPG----  286 (633)
Q Consensus       232 ~~~~~~~-----p~~--~------~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v----~W~~--~g~--~~~~~~~----  286 (633)
                      .|.....     ...  .      .........+..|+.+.|.|.+.|.|.+.+    .|++  +|.  .+.....    
T Consensus       310 ~n~g~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~  389 (585)
T 2ocw_A          310 HSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKA  389 (585)
T ss_pred             EcCCCccccCceeeEEEEEecccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeec
Confidence            9864322     110  0      011123445668999999999999999977    7999  887  4432111    


Q ss_pred             CccceEEEc---cCce--EEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEecc-------------------------
Q psy15127        287 NAYGHLHVT---QEGT--LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFC-------------------------  336 (633)
Q Consensus       287 ~~~~~~~~~---~~~~--l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~-------------------------  336 (633)
                      ....++.+.   .++.  |.|.++..+|+|.|+|.| |..|..+..+.|.|...+                         
T Consensus       390 ~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~  468 (585)
T 2ocw_A          390 QYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPC  468 (585)
T ss_pred             ccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCccccccCCceeEecCCcEEEEEEecC
Confidence            112333333   2333  999999999999999999 888988888888886421                         


Q ss_pred             ---cCCCceEEeCCCcccc------C-----------CCCCceEEecccccCCEEEEEEEEcCCcceeE-EEEEEeecCC
Q psy15127        337 ---VLPKGTFTLGQPNLAT------G-----------NSDLRRIACDLRETDSGLYTCTASSESGETSW-SASLSVEPRP  395 (633)
Q Consensus       337 ---~~p~p~~~~~~~~~~~------g-----------~p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~-~~~l~v~~~p  395 (633)
                         ..|.|.+.|.......      +           .....+.|.++..+|+|.|+|.|.|..|.... .+.|.|..+|
T Consensus       469 ~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p  548 (585)
T 2ocw_A          469 KFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK  548 (585)
T ss_pred             CCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence               2233344444332111      0           01135688999999999999999999997654 4899999876

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=1.7e-32  Score=282.71  Aligned_cols=321  Identities=23%  Similarity=0.281  Sum_probs=233.2

Q ss_pred             cCcCCeeee-CCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCC---CCeEE-cccceEEEc----cCCCCCCeEE
Q psy15127         68 ALIKPFPIS-EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT---GRAKI-LDDRSLQIE----NVGPQDEGLY  138 (633)
Q Consensus        68 v~~~p~~~~-~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~---~~~~~-~~~~~L~i~----~v~~~d~G~Y  138 (633)
                      +..+|.+.. .+....+.+|+.++|.|.+.|.|.+.++|+|+|..+..   .+... ..++.|.|.    +++.+|+|.|
T Consensus        13 ~~~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y   92 (404)
T 3p3y_A           13 LTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEY   92 (404)
T ss_dssp             CCCCCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEEE
T ss_pred             ccCCCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEEE
Confidence            456788775 46778899999999999999999999999999987742   22222 235667665    8889999999


Q ss_pred             EEEEEeCCceE-EEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccce
Q psy15127        139 ICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRT  217 (633)
Q Consensus       139 ~C~~~n~~g~~-s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~  217 (633)
                      +|.|.|..|.. +..+.|.|..++......+....+.+|+.+.|.|.+..+.|.+.+.|++++.................
T Consensus        93 ~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~  172 (404)
T 3p3y_A           93 QCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGD  172 (404)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECTTSC
T ss_pred             EEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcCCCc
Confidence            99999998885 57788999887333344455678999999999999658899999999998754433333332223333


Q ss_pred             eeeEEE-----eeeEEEEeecCCCCC---------------------Ccccccc-cceeEEecCCceEEEEEEEeeecCC
Q psy15127        218 LGWLRV-----RPLYWNVARPRANLN---------------------PRYIGRK-MASLLIWNHPRVNRLSCFAEGSPLP  270 (633)
Q Consensus       218 ~~~~~~-----~g~y~C~a~~~~~~~---------------------p~~~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~  270 (633)
                      +.+..+     .|.|+|.+.|..+..                     |.+.... ......+..|+.+.|.|.+.|.|.+
T Consensus       173 l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~  252 (404)
T 3p3y_A          173 LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTP  252 (404)
T ss_dssp             EEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCC
T ss_pred             EEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCC
Confidence            333222     379999998865521                     1111111 1234557789999999999999999


Q ss_pred             eeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEeccc-------------
Q psy15127        271 SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCV-------------  337 (633)
Q Consensus       271 ~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~-------------  337 (633)
                      .+.|+++|..+..     ........++.|.|.++..+|+|.|+|.|.|..|..+..+.|.|...+.             
T Consensus       253 ~v~W~~~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g  327 (404)
T 3p3y_A          253 DIAWYKKGGDLPS-----DKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPG  327 (404)
T ss_dssp             EEEEEETTBCCCT-----TTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEECCCCEEECTT
T ss_pred             cEEEEECCEECCC-----CcccccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeeccCCcceeecC
Confidence            9999999987631     1223344567899999999999999999999999998888888875331             


Q ss_pred             -----------CCCceEEeCCCcccc--CC-------CCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEeec
Q psy15127        338 -----------LPKGTFTLGQPNLAT--GN-------SDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEP  393 (633)
Q Consensus       338 -----------~p~p~~~~~~~~~~~--g~-------p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~  393 (633)
                                 .|.|.+.|.......  +.       ....+.|.++..+|+|.|+|.|.|..|..+.++.|.|.+
T Consensus       328 ~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~d  403 (404)
T 3p3y_A          328 EDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD  403 (404)
T ss_dssp             CCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             CcEEEEEEccccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence                       233344443322111  00       012458899999999999999999999999999988763

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=6.9e-32  Score=288.05  Aligned_cols=412  Identities=15%  Similarity=0.111  Sum_probs=262.5

Q ss_pred             CCeEEEEEEe-cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCe
Q psy15127         58 DDQWKLIAKE-ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEG  136 (633)
Q Consensus        58 ~G~Y~C~a~~-v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G  136 (633)
                      .|.....+.- +..+|.|...+....+.+|+.++|.|.+.+    .++|+|++..+.    .....+.|.|.+++.+|+|
T Consensus        22 ~g~~~~~i~l~v~~pP~i~~~~~~~~v~~G~~v~l~C~~~~----~v~W~~~~~~~~----~~~~~~~L~I~~~~~~D~G   93 (524)
T 2ec8_A           22 TGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDET----NENKQNEWITEKAEATNTG   93 (524)
T ss_dssp             -----------CCCCCEEESCCSEEECCTTSCEEEEEECTT----EEEEEEESSSCC----EEECSSEEEESSCCSTTCE
T ss_pred             cCCCCCeEEcCCCCCCccCCCCceEEEeCCCeEEEEEeCCc----eEEEcCCCcccc----ccCccceEEEcccchhhCE
Confidence            5655555543 788999988888899999999999999876    899999998772    3345678999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEE-CCEEeccCCCeeEEecc
Q psy15127        137 LYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKK-NGQFIDLESSKSLDLSR  215 (633)
Q Consensus       137 ~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~~~  215 (633)
                      .|+|.+.|  | .+..+.|.|..+ |.+...+....+.+|+.+.|.|. ..+.+.+.+.|++ +|..+.... .......
T Consensus        94 ~Y~C~a~n--g-~~~~~~l~V~~p-~~~~~~~~~~~v~~G~~v~l~C~-~~~~~~~~v~W~~~~g~~l~~~~-~~~~~~~  167 (524)
T 2ec8_A           94 KYTCTNKH--G-LSNSIYVFVRDP-AKLFLVDRSLYGKEDNDTLVRCP-LTDPEVTNYSLKGCQGKPLPKDL-RFIPDPK  167 (524)
T ss_dssp             EEEEEETT--S-CEEEEEEECCCS-SCSBCCCCCCCEETTSCEEECCC-BSCCCCSCEEEECSSSCCCCSSC-EEEEETT
T ss_pred             EEEEeecC--C-cceEEEEEECCC-CcccccccceEEEcCCeEEEECc-CCCCccceEEEEccCCcCcCCCC-ceeECCC
Confidence            99999998  4 377888888876 55557777788999999999999 4676678999988 776665332 2222233


Q ss_pred             ceeeeEEE----ee-eEEEEeecCCCCCCc----ccc----------cccceeEEecCCceEEEEEEEeeecCCe-eEEE
Q psy15127        216 RTLGWLRV----RP-LYWNVARPRANLNPR----YIG----------RKMASLLIWNHPRVNRLSCFAEGSPLPS-VFWT  275 (633)
Q Consensus       216 ~~~~~~~~----~g-~y~C~a~~~~~~~p~----~~~----------~~~~~~~~~~~g~~~~l~C~~~g~p~~~-v~W~  275 (633)
                      ..+.+..+    .| .|+|.+.|..+....    +..          ........+..|+.+.|.|.+.|.|.+. +.|+
T Consensus       168 ~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~  247 (524)
T 2ec8_A          168 AGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWK  247 (524)
T ss_dssp             TEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEE
T ss_pred             ccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEE
Confidence            44444433    48 999999887543211    100          0111223577899999999999999886 9999


Q ss_pred             ECCEEEEeccCCccceE----EEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEeccc--------------
Q psy15127        276 QEGSQVLMFPGNAYGHL----HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCV--------------  337 (633)
Q Consensus       276 ~~g~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~--------------  337 (633)
                      +++..+..... ....+    .....+.|.|.++..+|+|.|+|.|.|..|.....+.|.|...+.              
T Consensus       248 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~  326 (524)
T 2ec8_A          248 RENSQTKLQEK-YNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVN  326 (524)
T ss_dssp             ETTCSCCCCEE-EEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEEC
T ss_pred             eCCCCCccccc-cccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEc
Confidence            99976310000 00001    122346899999999999999999999999998888888864221              


Q ss_pred             -------------CCCce-EEeCCCccccCCC---------------CCceEEecccccCCEEEEEEEEcCCcceeEEEE
Q psy15127        338 -------------LPKGT-FTLGQPNLATGNS---------------DLRRIACDLRETDSGLYTCTASSESGETSWSAS  388 (633)
Q Consensus       338 -------------~p~p~-~~~~~~~~~~g~p---------------~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~  388 (633)
                                   .|.|. +.|..........               ...+.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus       327 ~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  406 (524)
T 2ec8_A          327 DGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFN  406 (524)
T ss_dssp             TTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             CCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEE
Confidence                         23444 6664443322111               124688899999999999999999999999999


Q ss_pred             EEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeee
Q psy15127        389 LSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS  468 (633)
Q Consensus       389 l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~  468 (633)
                      |.|..+|.......     ...+   .+.+.........+.|.....      .+..+.-.....+....-.   .....
T Consensus       407 l~V~~~P~i~~~~~-----~~~g---~l~C~~~g~P~p~i~W~~~~~------~~~~~~~~~~~~~~~~~~~---~~~~~  469 (524)
T 2ec8_A          407 VYVNTKPEILTYDR-----LVNG---MLQCVAAGFPEPTIDWYFCPG------TEQRCSASVLPVDVQTLNS---SGPPF  469 (524)
T ss_dssp             EEECEEEEEEEEEC-----CSSS---CEEEEEEEESCCEEECCCC----------------CCCCCCCCCCC----CCSS
T ss_pred             EEEecCCeEeeccc-----CcCc---EEEEEEEeecCCEEEEEECCC------cccccccccCCCCceeeee---ccCCC
Confidence            99987665422211     1112   555665555666899987531      1110000000000000000   00011


Q ss_pred             ceE----EEecCCCCCeEEEEEEEEeccccCCCCCCC
Q psy15127        469 TSI----TVSDLKPDTSYMFIVRAENSHGLGIPSPVS  501 (633)
Q Consensus       469 ~~~----~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~  501 (633)
                      ..+    .+......+.+.|+|.|.|..|....+...
T Consensus       470 g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~~~~~~l  506 (524)
T 2ec8_A          470 GKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNF  506 (524)
T ss_dssp             SCEEEEEEECCCSCCC-----CEEECSSCEEECCCCC
T ss_pred             CcceEEEEEEEEEccCCEEEEEEEEcCCCceEEEEEE
Confidence            112    233334578899999999999987655443

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=1.3e-30  Score=254.94  Aligned_cols=259  Identities=22%  Similarity=0.304  Sum_probs=201.2

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCe-EE---cccceEEEccCCCCCCeEEEEEEEe
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRA-KI---LDDRSLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~-~~---~~~~~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                      ..+|.|...|.++.+.+|+.++|.|.+.+.|.+.++|+|++..+..+.. ..   .....|.|.+++.+|+|.|+|.+.|
T Consensus         3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n   82 (284)
T 2rik_A            3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN   82 (284)
T ss_dssp             CCCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             cCCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEE
Confidence            4689999999999999999999999999999999999999998865432 22   1246899999999999999999999


Q ss_pred             CCceEEEEEEEEEEeeccccccCC-CceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEecc--ceeeeE
Q psy15127        145 LVGSISLRASLTVHLLRDDFRAEP-KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR--RTLGWL  221 (633)
Q Consensus       145 ~~g~~s~~~~l~V~~~~p~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~--~~~~~~  221 (633)
                      ..|..+..+.|.|..+ |.+...+ ....+.+|+.+.|.|. ..+.|.+.+.|++++..+............  ..+.+.
T Consensus        83 ~~g~~~~~~~l~V~~~-p~~~~~~~~~~~v~~g~~~~l~C~-~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~  160 (284)
T 2rik_A           83 VAGKDSCSAQLGVQEP-PRFIKKLEPSRIVKQDEHTRYECK-IGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMY  160 (284)
T ss_dssp             TTEEEEEEEEEEEECC-CEEEECCCSEEEEETTCCEEEEEE-EESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEEC
T ss_pred             CCceEEEEEEEEccCC-CcccccCCCceEecCCceEEEEEE-EeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEC
Confidence            9999999999999988 6655443 4456889999999999 578899999999999988765543332222  122222


Q ss_pred             E----EeeeEEEEeecCCCC-----------CCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccC
Q psy15127        222 R----VRPLYWNVARPRANL-----------NPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPG  286 (633)
Q Consensus       222 ~----~~g~y~C~a~~~~~~-----------~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~  286 (633)
                      .    ..|.|+|.+.|..+.           +|.+..  ......+..|+.+.|.|.+.|.|.+.+.|+++|..+...  
T Consensus       161 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~--~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~--  236 (284)
T 2rik_A          161 NLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRK--KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSG--  236 (284)
T ss_dssp             SCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCS--CCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBT--
T ss_pred             CCCcccCEEEEEEEEcCCCceeEEEEEEEecCCccee--CCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCC--
Confidence            2    248999999988662           222221  122345678999999999999999999999999987521  


Q ss_pred             CccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127        287 NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR  333 (633)
Q Consensus       287 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  333 (633)
                      .............|.|.++..+|.|.|+|.|.|..|..+..+.|.|.
T Consensus       237 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  283 (284)
T 2rik_A          237 KKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK  283 (284)
T ss_dssp             TTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence            11111112222479999999999999999999999999999888875

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=4.1e-32  Score=286.95  Aligned_cols=334  Identities=12%  Similarity=0.100  Sum_probs=211.8

Q ss_pred             ceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEccc---ceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEE
Q psy15127         80 DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDD---RSLQIENVGPQDEGLYICDVENLVGSISLRASLT  156 (633)
Q Consensus        80 ~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~  156 (633)
                      .+.+.+|++++|.|.+.+.+...+.|++++..+.........+   .+|.|.+++.+|+|.|+|.|.|..+.....+.|.
T Consensus        57 ~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~v~  136 (527)
T 3qs9_E           57 AVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVS  136 (527)
T ss_dssp             EEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEE
T ss_pred             eEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccCCCcceEEEEEECcCChhhCeeEEEEEEeccccEEEEEEEE
Confidence            6889999999999999888888999999988654322111111   2599999999999999999999888776666666


Q ss_pred             EEeeccccccCC-CceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCe---eEEeccceeeeEEEeeeEEEEee
Q psy15127        157 VHLLRDDFRAEP-KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK---SLDLSRRTLGWLRVRPLYWNVAR  232 (633)
Q Consensus       157 V~~~~p~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~y~C~a~  232 (633)
                      |.   |.+...+ .......|+.+.|.|. +.|.|.|.|.|++++..+......   .+......+ .....|.|+|.|.
T Consensus       137 v~---~~~~~~~~~p~~~~~~~~~~L~C~-a~G~P~P~i~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~G~Y~C~A~  211 (527)
T 3qs9_E          137 IR---NTLLYTLRRPYFRKMENQDALVCI-SESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVL-HELFGTDIRCCAR  211 (527)
T ss_dssp             EC--------CEEEEEEEECSSSSCEEEE-EEESSCCEEEEEEC-------------CEEECCSEE-CCCCSSCEEEEEE
T ss_pred             EC---CceeeccCCCcEEecCCceEEEEE-EceecCCeEEEEECCCCCccccccCCcEEEEeeeec-cccCCEEEEEEEE
Confidence            65   2222222 2223456888899999 699999999999988765422111   111111111 1234689999999


Q ss_pred             cCCCCCCcc--------cccccceeEEecCCceEEEEEEEe-eecCCeeEEEECCEEEEeccCCccceEE------EccC
Q psy15127        233 PRANLNPRY--------IGRKMASLLIWNHPRVNRLSCFAE-GSPLPSVFWTQEGSQVLMFPGNAYGHLH------VTQE  297 (633)
Q Consensus       233 ~~~~~~p~~--------~~~~~~~~~~~~~g~~~~l~C~~~-g~p~~~v~W~~~g~~~~~~~~~~~~~~~------~~~~  297 (633)
                      |..+.....        ..........+..|+.+.|.|.+. |.|.+.+.|+++|..+....  ......      ....
T Consensus       212 N~~G~~~~~~~~l~V~~~p~~~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~--~~~~~~~~~~~~~~~~  289 (527)
T 3qs9_E          212 NELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGN--YFEMSTYSTNRTMIRI  289 (527)
T ss_dssp             CSSCEEEEECEEEESSSCCCCSCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGG--EEEEEEEETTTEEEEE
T ss_pred             eCCCcccceEEEEEEeccCccCCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCc--eeeeeeeccCcceeeE
Confidence            987743110        011123456778899999999996 89999999999998653110  000001      1123


Q ss_pred             ceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEecc--------------------------cCCCceEEeCCCccc
Q psy15127        298 GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFC--------------------------VLPKGTFTLGQPNLA  351 (633)
Q Consensus       298 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~--------------------------~~p~p~~~~~~~~~~  351 (633)
                      +.|.|.++..+|+|.|+|.|.|.   .+..+.|.|...+                          ..|+|.+.|......
T Consensus       290 ~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~  366 (527)
T 3qs9_E          290 LFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKS  366 (527)
T ss_dssp             EEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEE
T ss_pred             EEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEE
Confidence            46999999999999999999987   5666666665322                          113344444333221


Q ss_pred             cCC------CCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCe
Q psy15127        352 TGN------SDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGS  425 (633)
Q Consensus       352 ~g~------p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~  425 (633)
                      ...      ....+.|.++..+|+|.|+|.|.|..|..+.++.|.|..+|.....   ..       -..+.+.......
T Consensus       367 l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i~~~---~~-------~~~l~C~a~g~P~  436 (527)
T 3qs9_E          367 FPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAE---AS-------ASQASCFSDGYPL  436 (527)
T ss_dssp             EECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEEEEC---CC-------CE---EEEECSSC
T ss_pred             CcCCcccccCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeEEEe---CC-------CCEEEEEEEEEcC
Confidence            100      1234578999999999999999999999998999999877643111   10       1123444445555


Q ss_pred             EEEEeCCC
Q psy15127        426 VTLGWGEP  433 (633)
Q Consensus       426 i~l~W~~~  433 (633)
                      ..+.|...
T Consensus       437 p~i~W~~~  444 (527)
T 3qs9_E          437 PSWTWKKC  444 (527)
T ss_dssp             CEEEEECC
T ss_pred             CeEEEEEC
Confidence            68888744

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=100.00  E-value=1.6e-30  Score=257.03  Aligned_cols=282  Identities=29%  Similarity=0.433  Sum_probs=207.1

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC--CeEEc--cc--ceEEEccCCCCCCeEEEEEEE
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG--RAKIL--DD--RSLQIENVGPQDEGLYICDVE  143 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~--~~~~~--~~--~~L~i~~v~~~d~G~Y~C~~~  143 (633)
                      .+|.|...|.++.+.+|+.++|.|.+.+.|.+.+.|+|++..+...  +....  .+  ..|.|.+++.+|+|.|+|.|.
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~   82 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEE
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEE
Confidence            5799999999999999999999999999999999999999988643  33222  22  389999999999999999999


Q ss_pred             eCCceEEEEEEEEEEeeccccc-----cCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEecccee
Q psy15127        144 NLVGSISLRASLTVHLLRDDFR-----AEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL  218 (633)
Q Consensus       144 n~~g~~s~~~~l~V~~~~p~~~-----~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~  218 (633)
                      |..|..+..+.|.|..+ |.+.     ..+....+..|+.+.|.|. ..+.|.+.+.|++++..+.....          
T Consensus        83 n~~g~~~~~~~l~V~~~-p~~~~~~~~~~~~~~~~~~g~~~~l~C~-~~g~p~p~i~W~~~~~~~~~~~~----------  150 (305)
T 2nzi_A           83 NQGGSVSGTASLEVEVP-AKIHLPKTLEGMGAVHALRGEVVSIKIP-FSGKPDPVITWQKGQDLIDNNGH----------  150 (305)
T ss_dssp             ETTEEEEEEEEEEECEE-EEECCCHHHHSSCCEEEETTCCEEEEEE-EEEESCCEEEEEESSSBCCSSSS----------
T ss_pred             cCCCCccceEEEEEecC-CccCCCccccccccEEecCCCEEEEEEE-ECCCCCCEEEEEECCEECCCCCc----------
Confidence            99999889999999876 4432     2234556777877777777 45666666666666543321100          


Q ss_pred             eeEEEeeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCc
Q psy15127        219 GWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG  298 (633)
Q Consensus       219 ~~~~~~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~  298 (633)
                                                                                            ..........
T Consensus       151 ----------------------------------------------------------------------~~~~~~~~~~  160 (305)
T 2nzi_A          151 ----------------------------------------------------------------------YQVIVTRSFT  160 (305)
T ss_dssp             ----------------------------------------------------------------------CEEEECSSEE
T ss_pred             ----------------------------------------------------------------------EEEEEcCCce
Confidence                                                                                  0000001234


Q ss_pred             eEEEcC-CCCCCCeEEEEEEEeCCceeEEEEEEEEEecccCCCceEEeCCCccccCCCCCceEEecccccCCEEEEEEEE
Q psy15127        299 TLRIQG-VQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTAS  377 (633)
Q Consensus       299 ~l~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~p~~~~~~~~~~~g~p~~~~~i~~~~~~d~g~y~c~a~  377 (633)
                      .|.|.+ +..+|.|.|+|.|.|..|..+..+.|.|..                                           
T Consensus       161 ~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~-------------------------------------------  197 (305)
T 2nzi_A          161 SLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD-------------------------------------------  197 (305)
T ss_dssp             EEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEB-------------------------------------------
T ss_pred             EEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEec-------------------------------------------
Confidence            688888 888888888888888888776666555542                                           


Q ss_pred             cCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCC
Q psy15127        378 SESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQT  457 (633)
Q Consensus       378 n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~  457 (633)
                                      .               |.+|..+.+.......+.|+|.+|...+  +.++..|.++++... ..
T Consensus       198 ----------------~---------------P~~p~~~~~~~~~~~~v~l~w~~p~~~g--~~~i~~y~v~~~~~~-~~  243 (305)
T 2nzi_A          198 ----------------V---------------PDPPRGVKVSDVSRDSVNLTWTEPASDG--GSKITNYIVEKCATT-AE  243 (305)
T ss_dssp             ----------------C---------------CCCCEEEEEESCCSSCEEEEEECCSCCS--BSCEEEEEEEEEETT-SC
T ss_pred             ----------------C---------------CCCCCCceeeeccCCEEEEEEcCCccCC--CCceeEEEEEEecCC-CC
Confidence                            2               1234444555567789999999986653  568999999998764 35


Q ss_pred             CeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCceeecCCCC
Q psy15127        458 GWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNS  511 (633)
Q Consensus       458 ~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~~p  511 (633)
                      .|...... ....++|.+|.+++.|.|+|.|.|..|.|.+|..+..+.+.+.+|
T Consensus       244 ~w~~~~~~-~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~~~~~~~t~~~~p  296 (305)
T 2nzi_A          244 RWLRVGQA-RETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKT  296 (305)
T ss_dssp             CEEEEEEE-SSSEEEECSCCSSCEEEEEEEEEETTEECCCCCCCCCEECCC---
T ss_pred             ccEECccc-cCceEEecCCCCCCeEEEEEEEEeCCcccCCcCCCCCEEcCCccc
Confidence            67755433 367899999999999999999999999999998876666655443

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=2.7e-31  Score=277.83  Aligned_cols=323  Identities=15%  Similarity=0.127  Sum_probs=211.0

Q ss_pred             ceEEEcCCCC-CCeEEEEEEe------------cCcCCeee-eCCCceEEEcCCeEEEEEEEeccCCC---eEEEEeCCc
Q psy15127         48 SVLGARGALS-DDQWKLIAKE------------ALIKPFPI-SEPSDATVLSGSVVEFVCRVGGDPLP---TILWRRDDG  110 (633)
Q Consensus        48 ~~L~i~~v~~-~G~Y~C~a~~------------v~~~p~~~-~~~~~~~~~~G~~~~L~C~~~~~p~p---~i~W~~~~~  110 (633)
                      +.|.|.+++. +| |+|.|.+            +..+|.+. ..+....+.+|+.+.|.|.+.+.|.+   .|+|+|++.
T Consensus        50 ~~l~i~~v~~d~g-Y~C~a~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~  128 (450)
T 1z7z_I           50 KVYELSNVQEDSQ-PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEK  128 (450)
T ss_dssp             EEEEEEEECSCBC-CEEEEEETTEEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTE
T ss_pred             eEEEEEecccCCe-eEEEEeCCCCcceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCE
Confidence            3699999988 88 9999977            44456554 66777889999999999999998887   899999998


Q ss_pred             cCCCCCeE-EcccceEEEccCCCCCCeEEEEEEEeCCceE--------EEEEEEEEEeeccccccCCCc---eEEecCCc
Q psy15127        111 KMPTGRAK-ILDDRSLQIENVGPQDEGLYICDVENLVGSI--------SLRASLTVHLLRDDFRAEPKD---TRVASGET  178 (633)
Q Consensus       111 ~i~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~--------s~~~~l~V~~~~p~~~~~~~~---~~~~~g~~  178 (633)
                      .+...... ...++.|.|.+++.+|+|.|+|.|.|..|..        +....|.|... |  ...|..   ..+.+|+.
T Consensus       129 ~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~-~--~~~p~~~~~~~v~~G~~  205 (450)
T 1z7z_I          129 ELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVL-P--ATPPQLVSPRVLEVDTQ  205 (450)
T ss_dssp             EEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCC-C--SSCCEEECCSEEETTSE
T ss_pred             EeecccccccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeecc-C--CCCCEecCceeEEeCCc
Confidence            87532211 1123589999999999999999999986642        23344555433 1  112222   67889999


Q ss_pred             EEEEEeCCCCC-C--CCeEEEEECCEEeccCCCeeEEeccceeee-------EEEee--eEEEEeecCCCCCCc---cc-
Q psy15127        179 ALLECGPPKGQ-P--EPTLHWKKNGQFIDLESSKSLDLSRRTLGW-------LRVRP--LYWNVARPRANLNPR---YI-  242 (633)
Q Consensus       179 ~~l~C~~~~~~-p--~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g--~y~C~a~~~~~~~p~---~~-  242 (633)
                      +.|.|.+ .|. |  .+.+.|++++..+...    .......+..       ....|  .|+|.+.|..+....   +. 
T Consensus       206 v~l~C~~-~g~~P~~~~~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V  280 (450)
T 1z7z_I          206 GTVVCSL-DGLFPVSEAQVHLALGDQRLNPT----VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI  280 (450)
T ss_dssp             EEEEEEE-ESCTTGGGCEEEEEETTEECCCE----EEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEe-eCCCCCCceEEEEeCCCEeCCce----EEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEE
Confidence            9999994 665 7  7899999999887651    1111111111       12247  999999998652200   00 


Q ss_pred             -----ccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEE
Q psy15127        243 -----GRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA  317 (633)
Q Consensus       243 -----~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  317 (633)
                           .........+.+|+.++|.|.+.  |.+.+.|  +|..+..          ......|.|..+..+|+|.|+|.|
T Consensus       281 ~~~~~p~i~~~~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~~----------~~~~~~L~i~~~~~~d~G~Y~C~a  346 (450)
T 1z7z_I          281 YSFPAPNVILTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQP----------LGPRAQLLLKATPEDNGRSFSCSA  346 (450)
T ss_dssp             ECCCCCEEEESCSEEETTCEEEEEEEC------------------------------CCCCCEEEECCGGGTTCEEEEEE
T ss_pred             ecCCCCeEecCCeeEeCCCcEEEEEecC--CCCEeEE--CCEEcCC----------CCceEEEEEecCcccCCceEEEEE
Confidence                 00001123567899999999997  8899999  7766521          112347999999999999999999


Q ss_pred             EeCCc-e---eEEEEEEEEEecccCCCc----eEEe------CCCccccCCCCCceE-------------EecccccCCE
Q psy15127        318 LSVAG-S---TTVRAFLQVREFCVLPKG----TFTL------GQPNLATGNSDLRRI-------------ACDLRETDSG  370 (633)
Q Consensus       318 ~n~~g-~---~~~~~~l~v~~~~~~p~p----~~~~------~~~~~~~g~p~~~~~-------------i~~~~~~d~g  370 (633)
                      .|..+ .   ....+.|.|...|.+...    .+..      .....+.|+|.+.+.             +..+..+|+|
T Consensus       347 ~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~g~~~~v~~~d~G  426 (450)
T 1z7z_I          347 TLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEG  426 (450)
T ss_dssp             EEEETTEEEEEEEEEECEEEEEEECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTSCEECCGGGCE
T ss_pred             EcCCCCcccccceeEEEEEecCCceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCCCCeEeEehhhCe
Confidence            97655 3   346677777765433221    1111      111123455544331             1257789999


Q ss_pred             EEEEEEEcCCcceeEEEEEEeec
Q psy15127        371 LYTCTASSESGETSWSASLSVEP  393 (633)
Q Consensus       371 ~y~c~a~n~~g~~~~~~~l~v~~  393 (633)
                      .|+|.|.|..|..+..+.|.|..
T Consensus       427 ~Y~C~a~N~~G~~~~~~~l~V~~  449 (450)
T 1z7z_I          427 TYLCRARSTQGEVTREVTVNVLS  449 (450)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEEeCCCceeEEEEEEEEc
Confidence            99999999999999999999874

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=2.7e-31  Score=271.43  Aligned_cols=303  Identities=21%  Similarity=0.257  Sum_probs=208.1

Q ss_pred             CCCCccccccceeeEEEEecccCCC--CCceEEeeCceEEEcCC-CC--CCeEEEEEEec-------------CcCCee-
Q psy15127         14 SSPRAEIEPATRTNRVSISGDPGFD--SRRSRSIFGSVLGARGA-LS--DDQWKLIAKEA-------------LIKPFP-   74 (633)
Q Consensus        14 ~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~i~~v-~~--~G~Y~C~a~~v-------------~~~p~~-   74 (633)
                      ++|.+.|+|       ..+|.+...  ..++. ..++.|.|.++ +.  +|.|+|.|.|.             ...+.+ 
T Consensus        34 g~P~p~i~W-------~k~g~~l~~~~~~~~~-~~~g~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~  105 (384)
T 3kld_A           34 GNPKPHIRW-------KLNGTDVDIGMDFRYS-VVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFK  105 (384)
T ss_dssp             EESCCEEEE-------EETTEECCC----CEE-EETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCS
T ss_pred             CCCCCEEEE-------EECCEECcCCCCccEE-EECCEEEEcCCCCcccCEEEEEEEEcCcccEEecceEEEEecccccc
Confidence            456667774       334544432  23443 34678888876 44  99999999991             111222 


Q ss_pred             eeCCCceEEEcCCeEEEEEEEe-ccCCCeEEEEeCCccCCCC-CeEE-cccceEEEccCCCCCCeEEEEEEEeCCceEEE
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKMPTG-RAKI-LDDRSLQIENVGPQDEGLYICDVENLVGSISL  151 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~-~~p~p~i~W~~~~~~i~~~-~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~  151 (633)
                      ...+..+.+.+|+.+.|.|.+. +.|.+.+.|++++.++... +... ..++.|.|.+++.+|+|.|+|.|.|..+....
T Consensus       106 ~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~  185 (384)
T 3kld_A          106 TRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKV  185 (384)
T ss_dssp             CCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEE
T ss_pred             cCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCCCcEEEeecCHHHCceEEEEEeccccccee
Confidence            2223457889999999999764 4567899999999877543 3332 34578999999999999999999998765321


Q ss_pred             ---EEEEEEEe------ecccc-ccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECC-EEeccCCCeeEEeccceeee
Q psy15127        152 ---RASLTVHL------LRDDF-RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNG-QFIDLESSKSLDLSRRTLGW  220 (633)
Q Consensus       152 ---~~~l~V~~------~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~-~~~~~~~~~~~~~~~~~~~~  220 (633)
                         ...+.+..      .+|.+ ...+....+.+|+.+.|.|. ..|.|.+.+.|++++ ..+...  .........|.+
T Consensus       186 ~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~-~~g~P~p~i~W~k~~~~~~~~~--~~~~~~~~~L~I  262 (384)
T 3kld_A          186 LGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECF-ALGNPVPTILWRRADGKPIARK--ARRHKSNGILEI  262 (384)
T ss_dssp             ECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEE-EEEESCCEEEEEETTCCCCCTT--CEECTTSCEEEE
T ss_pred             eCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEE-EeecCCCcEEEEeCCCcccccc--ceecCCCcEEEE
Confidence               12222221      11222 23456677889999999999 689999999999954 343321  111112223333


Q ss_pred             EEE----eeeEEEEeecCCCCCCc---cccc------ccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCC
Q psy15127        221 LRV----RPLYWNVARPRANLNPR---YIGR------KMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGN  287 (633)
Q Consensus       221 ~~~----~g~y~C~a~~~~~~~p~---~~~~------~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~  287 (633)
                      ..+    .|.|+|.|.|..+....   +...      .......+..|+.+.|.|.+.|.|.|.+.|+++|..+..    
T Consensus       263 ~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~----  338 (384)
T 3kld_A          263 PNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLT----  338 (384)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCC----
T ss_pred             CCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCC----
Confidence            222    58999999998774211   0000      112234567889999999999999999999999988742    


Q ss_pred             ccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127        288 AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR  333 (633)
Q Consensus       288 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  333 (633)
                       ..++.. .+++|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       339 -~~~~~~-~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~  382 (384)
T 3kld_A          339 -RDRIQI-EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI  382 (384)
T ss_dssp             -BTTEEE-ETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             -CccEEE-eCCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence             233333 45699999999999999999999999999999999885

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=1.4e-29  Score=274.14  Aligned_cols=401  Identities=17%  Similarity=0.218  Sum_probs=261.9

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccCCC---eEEEEeCCccCC---------------CCCeEEcc---c--ceEEEccCC
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDPLP---TILWRRDDGKMP---------------TGRAKILD---D--RSLQIENVG  131 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p~p---~i~W~~~~~~i~---------------~~~~~~~~---~--~~L~i~~v~  131 (633)
                      +..|..+.+.+|+.++|.|.+.+.+.+   .+.|+|++..+.               .++..+..   +  ..|.|.+++
T Consensus         4 i~~P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~   83 (585)
T 2ocw_A            4 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLS   83 (585)
T ss_pred             ccCcceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCC
Confidence            356778899999999999999887654   799999986431               12333322   1  369999999


Q ss_pred             CCCCeEEEEEEEeCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEec----c--
Q psy15127        132 PQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID----L--  205 (633)
Q Consensus       132 ~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~----~--  205 (633)
                      .+|+|.|+|.|.|..+..+..+.|.|..+ |.+...+....+.+|+.+.|.|.+..+.|.+.+.|++++....    .  
T Consensus        84 ~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~-p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~  162 (585)
T 2ocw_A           84 QDDSGRYKCGLGINSRGLSFDVSLEVSQG-PGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSS  162 (585)
T ss_pred             cccCEEEEEEcccCCCCceEEEEEEEecC-ccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCC
Confidence            99999999999998888888899999988 8888888888999999999999965556678999999875421    0  


Q ss_pred             -------CCCeeEEeccc-----eeeeEEE----eeeEEEEeecCCCCCCc---ccc-cccceeEEecCCceEEEEEEEe
Q psy15127        206 -------ESSKSLDLSRR-----TLGWLRV----RPLYWNVARPRANLNPR---YIG-RKMASLLIWNHPRVNRLSCFAE  265 (633)
Q Consensus       206 -------~~~~~~~~~~~-----~~~~~~~----~g~y~C~a~~~~~~~p~---~~~-~~~~~~~~~~~g~~~~l~C~~~  265 (633)
                             ..+..+.....     .|.+..+    .|.|+|.+.|..+....   +.. ...+..+.+..|+.+.|.|.+ 
T Consensus       163 ~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~~~~~~~G~~v~l~C~~-  241 (585)
T 2ocw_A          163 GYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCAL-  241 (585)
T ss_pred             cccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCCCceeEEcCCCcEEEEEEc-
Confidence                   11111111111     3433333    48999999988764211   111 122344567789999999997 


Q ss_pred             eecC---CeeEEE-ECCEE---EEeccC----CccceEEEcc---Cc--eEEEcCCCCCCCeEEEEEEEeCCceeE----
Q psy15127        266 GSPL---PSVFWT-QEGSQ---VLMFPG----NAYGHLHVTQ---EG--TLRIQGVQKEDAGFFVCSALSVAGSTT----  325 (633)
Q Consensus       266 g~p~---~~v~W~-~~g~~---~~~~~~----~~~~~~~~~~---~~--~l~i~~~~~~d~G~Y~C~a~n~~g~~~----  325 (633)
                      +.+.   +.+.|+ ++|..   +.....    ....++....   ++  .|.|.++..+|+|.|+|.|.|. |...    
T Consensus       242 ~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~~  320 (585)
T 2ocw_A          242 GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSD-GQLQEGSP  320 (585)
T ss_pred             CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcC-CCccccCc
Confidence            5554   678887 88742   211110    0123333322   34  7999999999999999999995 4433    


Q ss_pred             -EEEEEEEEecccC------------------------CCceE----EeCC--Ccc----c----------cCC------
Q psy15127        326 -VRAFLQVREFCVL------------------------PKGTF----TLGQ--PNL----A----------TGN------  354 (633)
Q Consensus       326 -~~~~l~v~~~~~~------------------------p~p~~----~~~~--~~~----~----------~g~------  354 (633)
                       ..+.|.|...+.+                        |.|.+    .|..  ...    .          .+.      
T Consensus       321 ~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~  400 (585)
T 2ocw_A          321 IQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEE  400 (585)
T ss_pred             eeeEEEEEecccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEecc
Confidence             6677777653322                        23333    4443  111    0          000      


Q ss_pred             ---CCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeC
Q psy15127        355 ---SDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWG  431 (633)
Q Consensus       355 ---p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~  431 (633)
                         ....+.|.++..+|+|.|+|.| |..|..+..+.|.|...|..            ...|.  .........+.|.|.
T Consensus       401 ~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~------------~~~~~--~~~v~~G~~v~L~C~  465 (585)
T 2ocw_A          401 PGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPN------------LKVPG--NVTAVLGETLKVPCH  465 (585)
T ss_pred             CCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCccc------------cccCC--ceeEecCCcEEEEEE
Confidence               0112678899999999999999 99998888899999764322            01121  122334567788887


Q ss_pred             CCCCCCCCCcceeEEEEEEEEecCCCC----------eEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCC
Q psy15127        432 EPEPRGGGVAPVIGYTVEYFSSDLQTG----------WVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIP  497 (633)
Q Consensus       432 ~~~~~~~~~~~i~~Y~v~~~~~~~~~~----------~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~  497 (633)
                      .....    .....+.+.|...+....          ............++|.++...+.+.|+|.|.|..|.+..
T Consensus       466 ~~~~~----~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  537 (585)
T 2ocw_A          466 FPCKF----SSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGET  537 (585)
T ss_pred             ecCCC----CCCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEE
Confidence            64311    111224455555432110          111000112357999999999999999999999997653

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.98  E-value=8.8e-31  Score=279.42  Aligned_cols=322  Identities=14%  Similarity=0.117  Sum_probs=205.9

Q ss_pred             ccCCCCCCCCCCccccccceee----EEEEecc---cCCCCCceEEee---CceEEEcCCCC--CCeEEEEEEe------
Q psy15127          6 DTNHAHPMSSPRAEIEPATRTN----RVSISGD---PGFDSRRSRSIF---GSVLGARGALS--DDQWKLIAKE------   67 (633)
Q Consensus         6 ~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~---~~~~~~~~~~~~---~~~L~i~~v~~--~G~Y~C~a~~------   67 (633)
                      .+.|.. .+.|.+.|.|+....    ...+...   ......|+....   .++|.|.+++.  +|.|+|.|.|      
T Consensus        19 ~L~C~~-~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~   97 (523)
T 2rcj_C           19 TISCTG-TSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDYYCASWNSSDNSY   97 (523)
T ss_pred             EEEEEE-eccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEEEEEEEccCCCccc
Confidence            334444 344677888766431    1111110   011124555432   24799999998  9999999987      


Q ss_pred             ---------c----CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCC--eEEEEeCCccCCCCCeEE----ccc------
Q psy15127         68 ---------A----LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRDDGKMPTGRAKI----LDD------  122 (633)
Q Consensus        68 ---------v----~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~~~~i~~~~~~~----~~~------  122 (633)
                               |    ..+|.+...+....+.+|+.++|.|.+.+.|++  .|+|+|+|..+..+....    ..+      
T Consensus        98 ~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~  177 (523)
T 2rcj_C           98 VFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAAS  177 (523)
T ss_pred             cccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEE
Confidence                     2    245666666666677889999999999987654  899999999886543221    111      


Q ss_pred             ceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEE---eeccccccCCCceEEecCCcEEEEEeCCCCCCCC-eEEEEE
Q psy15127        123 RSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH---LLRDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKK  198 (633)
Q Consensus       123 ~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~---~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~  198 (633)
                      ..|.|.+++.+|+|.|+|.|.|..+.....+.+.+.   ..+|.+...+....+.+|+.+.|.|.+....|.+ .|.|++
T Consensus       178 s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k  257 (523)
T 2rcj_C          178 SYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNS  257 (523)
T ss_pred             EEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEec
Confidence            369999999999999999999998876555554322   1124443333334567999999999954444877 999999


Q ss_pred             CCEEeccCCCeeEEecc------ceeeeE----EEeeeEEEEeecCCCCCC-----------cccccccceeEEecCCce
Q psy15127        199 NGQFIDLESSKSLDLSR------RTLGWL----RVRPLYWNVARPRANLNP-----------RYIGRKMASLLIWNHPRV  257 (633)
Q Consensus       199 ~~~~~~~~~~~~~~~~~------~~~~~~----~~~g~y~C~a~~~~~~~p-----------~~~~~~~~~~~~~~~g~~  257 (633)
                      +|..+............      ..+.+.    .. |.|+|.|.|..+...           .+..........+..|+.
T Consensus       258 ~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~  336 (523)
T 2rcj_C          258 GALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRT  336 (523)
T ss_pred             CCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCceEEecCCCchhhcccCCc
Confidence            99875432111111111      122222    23 999999999887531           111111111112567899


Q ss_pred             EEEEEEEeeecC----CeeEEEECCEEEEeccCCccceEE-----EccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127        258 NRLSCFAEGSPL----PSVFWTQEGSQVLMFPGNAYGHLH-----VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  328 (633)
Q Consensus       258 ~~l~C~~~g~p~----~~v~W~~~g~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  328 (633)
                      +.|.|.+.|.|+    +.|.|+|+|..+.....  .....     ....+.|.|..+..+|+|.|+|.|.|..+......
T Consensus       337 ~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~--~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  414 (523)
T 2rcj_C          337 PEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKT--KPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEK  414 (523)
T ss_pred             eEEEEEEecccCCCCceEEEEEECCeEccCCcc--CCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeE
Confidence            999999999764    49999999998752211  11110     11123588999999999999999999877664443


Q ss_pred             EEE
Q psy15127        329 FLQ  331 (633)
Q Consensus       329 ~l~  331 (633)
                      .+.
T Consensus       415 ~~~  417 (523)
T 2rcj_C          415 TIS  417 (523)
T ss_pred             EEE
Confidence            343

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.98  E-value=4e-31  Score=270.98  Aligned_cols=300  Identities=19%  Similarity=0.259  Sum_probs=212.2

Q ss_pred             CCCCccccccceeeEEEEecccCCCCC-ceEEeeCceEEEcCCCC--------CCeEEEEEEe-------------cCcC
Q psy15127         14 SSPRAEIEPATRTNRVSISGDPGFDSR-RSRSIFGSVLGARGALS--------DDQWKLIAKE-------------ALIK   71 (633)
Q Consensus        14 ~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~i~~v~~--------~G~Y~C~a~~-------------v~~~   71 (633)
                      +.|.+.|+|+..      +|.+..... ...+..+++|.|.+++.        +|.|+|.|.|             +..+
T Consensus        30 g~p~p~v~W~k~------~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~  103 (388)
T 2v5m_A           30 GNPMPEIIWIRS------DGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVA  103 (388)
T ss_dssp             EESCCEEEEEET------TSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECCCEEEEEECC
T ss_pred             CCCCCEEEEEcC------CCCccccCCCceEEcCCceEEecccChhhccccccCceEEEEEEccCCeEEecceEEEEccc
Confidence            345566663321      344443322 22345678999999885        6999999998             3345


Q ss_pred             CeeeeCCCceEEEcCCeEEEEEEEeccCC---CeEEEEeCCccCC------CCCeEEcccceEEEccCCCCCC-eEEEEE
Q psy15127         72 PFPISEPSDATVLSGSVVEFVCRVGGDPL---PTILWRRDDGKMP------TGRAKILDDRSLQIENVGPQDE-GLYICD  141 (633)
Q Consensus        72 p~~~~~~~~~~~~~G~~~~L~C~~~~~p~---p~i~W~~~~~~i~------~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~  141 (633)
                      |.+...+....+.+|+.++|.|.+.+.+.   +.+.|++++..+.      .++.....++.|.|.+++.+|+ |.|+|.
T Consensus       104 p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~  183 (388)
T 2v5m_A          104 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCR  183 (388)
T ss_dssp             CCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEE
T ss_pred             cccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCCcEEEecCCccccCeeEEEE
Confidence            66666677788999999999999987643   6899999987652      3455666678999999999999 999999


Q ss_pred             EEeCCceE-EEE---EEEEEEeec----cc-cccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEec----cCCC
Q psy15127        142 VENLVGSI-SLR---ASLTVHLLR----DD-FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID----LESS  208 (633)
Q Consensus       142 ~~n~~g~~-s~~---~~l~V~~~~----p~-~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~----~~~~  208 (633)
                      +.|..+.. ...   ..|.|..+.    |. .........+.+|+.+.|.|. ..|.|.+.+.|++++..+.    ....
T Consensus       184 ~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~-~~g~p~p~v~W~~~~~~~~~~~~~~~~  262 (388)
T 2v5m_A          184 TKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCP-AQGFPAPSFRWYKFIEGTTRKQAVVLN  262 (388)
T ss_dssp             EEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCC-CEEESCCEEEEEEECTTSSCEEECCCS
T ss_pred             eccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEE-CCCCCCCEEEEEecCCCCccccccccc
Confidence            99976442 221   356665431    21 122234457889999999999 6788999999999753221    1111


Q ss_pred             eeEEeccceeeeEEE----eeeEEEEeecCCCCCCcc---c------ccccceeEEecCCceEEEEEEEeeecCCeeEEE
Q psy15127        209 KSLDLSRRTLGWLRV----RPLYWNVARPRANLNPRY---I------GRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWT  275 (633)
Q Consensus       209 ~~~~~~~~~~~~~~~----~g~y~C~a~~~~~~~p~~---~------~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~  275 (633)
                      .........+.+..+    .|.|+|.|.|..+.....   .      .........+..|+.+.|.|.+.|.|.+.+.|+
T Consensus       263 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~  342 (388)
T 2v5m_A          263 DRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM  342 (388)
T ss_dssp             SSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEEE
T ss_pred             CceecccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCCeEEEE
Confidence            111222233333222    489999999987742110   0      011122345678999999999999999999999


Q ss_pred             ECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127        276 QEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       276 ~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      ++|..+..            .++.|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus       343 ~~g~~i~~------------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          343 KDGKAIGH------------SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             ETTEECSC------------CSSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             ECCEECcc------------CCCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence            99987631            2468999999999999999999999999999988876

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.98  E-value=6.7e-31  Score=269.99  Aligned_cols=308  Identities=17%  Similarity=0.236  Sum_probs=216.2

Q ss_pred             ccCCCCCCCCCCccccccceeeEEEEecccCCCCC-ceE-EeeCceEEEcCCCC--CCeEEEEEEec-------------
Q psy15127          6 DTNHAHPMSSPRAEIEPATRTNRVSISGDPGFDSR-RSR-SIFGSVLGARGALS--DDQWKLIAKEA-------------   68 (633)
Q Consensus         6 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~L~i~~v~~--~G~Y~C~a~~v-------------   68 (633)
                      .+.|..-...|.+.|+|       ..+|.+...+. ++. ...+++|.|.+++.  +|.|+|.|.|.             
T Consensus        25 ~l~C~~~~~~p~~~v~W-------~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v   97 (395)
T 1bih_A           25 VLECIIEGNDQGVKYSW-------KKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRK   97 (395)
T ss_dssp             EECCCEESCCSSCEEEE-------EESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEEEecCCCCceEEE-------EECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEEEEeCCCeEEeEEEEEEE
Confidence            34444444456677774       44565554443 222 23467899999998  99999999981             


Q ss_pred             --CcCCeeeeCCCceEEEcCCeEEEEEEE-eccCCCeEEEEeCCc---cCC-----CCCeEEcccceEEEccCCCCCCe-
Q psy15127         69 --LIKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDG---KMP-----TGRAKILDDRSLQIENVGPQDEG-  136 (633)
Q Consensus        69 --~~~p~~~~~~~~~~~~~G~~~~L~C~~-~~~p~p~i~W~~~~~---~i~-----~~~~~~~~~~~L~i~~v~~~d~G-  136 (633)
                        ...|.+  .+....+.+|+.+.|.|.+ .+.|.+.+.|++++.   +..     ..+.....++.|.|.+++.+|+| 
T Consensus        98 ~~~~~p~~--~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~  175 (395)
T 1bih_A           98 TYLIASPA--KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSD  175 (395)
T ss_dssp             EEEECCCC--EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCS
T ss_pred             EEeecCCc--CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCCcEEEEEEeeccCCC
Confidence              011222  2335567799999999996 788999999999862   221     34555566789999999999999 


Q ss_pred             --EEEEEEEeCCceEEEEEEEEEE---ee---------ccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEE
Q psy15127        137 --LYICDVENLVGSISLRASLTVH---LL---------RDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQF  202 (633)
Q Consensus       137 --~Y~C~~~n~~g~~s~~~~l~V~---~~---------~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~  202 (633)
                        .|+|.|.|..+...........   ..         .|.+  .+....+.+|+.+.|.|. ..|.|.+.+.|+++|..
T Consensus       176 ~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~v~l~C~-~~g~p~~~i~W~~~g~~  252 (395)
T 1bih_A          176 IYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDVTMIYCM-YGSNPMGYPNYFKNGKD  252 (395)
T ss_dssp             SEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSCEEEEEE-EECSSCCCCEEEETTEE
T ss_pred             ceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECCCcEEEEEE-eccCCCCeEEEEECCEE
Confidence              9999999988874333222111   11         1222  345678899999999999 58899999999999998


Q ss_pred             eccCCCeeEEeccc----eeeeEE----EeeeEEEEeecCCCCCCc----ccc-------cccceeEEecCCceEEEEEE
Q psy15127        203 IDLESSKSLDLSRR----TLGWLR----VRPLYWNVARPRANLNPR----YIG-------RKMASLLIWNHPRVNRLSCF  263 (633)
Q Consensus       203 ~~~~~~~~~~~~~~----~~~~~~----~~g~y~C~a~~~~~~~p~----~~~-------~~~~~~~~~~~g~~~~l~C~  263 (633)
                      +.......+.....    .+.+..    ..|.|+|.|.|..+....    +..       ........+..|+.++|.|.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~  332 (395)
T 1bih_A          253 VNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCK  332 (395)
T ss_dssp             CCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECE
T ss_pred             cCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEE
Confidence            86543332221111    222222    248999999998775321    100       01111255678999999999


Q ss_pred             EeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127        264 AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       264 ~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      +.|.|.+.+.|+++|..+..      .++... ++.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus       333 ~~g~p~p~v~W~~~g~~~~~------~~~~~~-~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          333 VTGLPAPNVVWSHNAKPLSG------GRATVT-DSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             EEEESCCCCEEEETTEECCS------SSEEEE-TTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ECcccCCeeEEEECCEECCC------CceEEE-CCEEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence            99999999999999988631      244443 459999999999999999999999999999888876

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.97  E-value=5.2e-32  Score=303.38  Aligned_cols=458  Identities=15%  Similarity=0.140  Sum_probs=102.0

Q ss_pred             cccCCCCCCCCCCccccccce--eeEEEEecccCCCCCceEEeeCceEEEcCCCC--CCeEEEEEEe-------------
Q psy15127          5 LDTNHAHPMSSPRAEIEPATR--TNRVSISGDPGFDSRRSRSIFGSVLGARGALS--DDQWKLIAKE-------------   67 (633)
Q Consensus         5 ~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~--~G~Y~C~a~~-------------   67 (633)
                      +.+.|...  .|.+.|+|+..  ....      ..++..+.......|.|.+++.  +|.|+|.+.+             
T Consensus       146 v~L~C~~~--~p~~~v~w~~~~~~~~~------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~~  217 (772)
T 3v2a_R          146 VVIPCLGS--ISNLNVSLCARYPEKRF------VPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVV  217 (772)
T ss_dssp             EEECCCCS--CSSCCEEEEEETTTEEE------CCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEEETTEEEECCEEEEE
T ss_pred             EEEEccCC--CCCcEEEEEecCCCccc------cCCCceeecCCCCCeEecCCChhhCeEEEEEEEECCceEEEEEEEEE
Confidence            33444443  36677775543  2222      2233444455567899999998  9999999987             


Q ss_pred             c--CcCCeeeeCC-CceEEEcCCeEEEEEEEec--cCCCeEEEEeCCccCCCCCeE------------EcccceEEEccC
Q psy15127         68 A--LIKPFPISEP-SDATVLSGSVVEFVCRVGG--DPLPTILWRRDDGKMPTGRAK------------ILDDRSLQIENV  130 (633)
Q Consensus        68 v--~~~p~~~~~~-~~~~~~~G~~~~L~C~~~~--~p~p~i~W~~~~~~i~~~~~~------------~~~~~~L~i~~v  130 (633)
                      +  ..+|.+...+ ....+.+|+.++|.|.+.+  .+.+.+.|++++..+......            ......|.|.++
T Consensus       218 v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v  297 (772)
T 3v2a_R          218 VVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV  297 (772)
T ss_dssp             EECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSC
T ss_pred             EecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcC
Confidence            1  1123333444 4478999999999999987  455689999999876442211            112357999999


Q ss_pred             CCCCCeEEEEEEEeCCceEEEEEEEEEEeeccccccCC---CceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCC
Q psy15127        131 GPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEP---KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES  207 (633)
Q Consensus       131 ~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~---~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~  207 (633)
                      +.+|+|.|+|.+.|..+..+..+.|.|..+ |.+...+   ....+.+|+.+.|.|. ..+.|.+.+.|+++|..+....
T Consensus       298 ~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~-p~~~~~~~~~~~~~v~~G~~v~l~C~-~~~~p~~~v~W~~~g~~l~~~~  375 (772)
T 3v2a_R          298 TRSDQGLYTCAASSGLMTKKNSTFVRVHEK-PFVAFGSGMESLVEATVGERVRIPAK-YLGYPPPEIKWYKNGIPLESNH  375 (772)
T ss_dssp             CSTTCSEEEEEEECSSCEEEEEEEEEEECC-CC-----------------------------------------------
T ss_pred             CcCCCeEEEEEEEcCCcceeEEEEEEEeCC-CeeEeccCCCCcEEEcCCCcEEEEEE-EeeeCCCeEEEEECCEeCCCCc
Confidence            999999999999999988888999999887 6544333   3457889999999999 5788999999999998876532


Q ss_pred             CeeEEeccceeeeE----EEeeeEEEEeecCCCCC-------------Ccccccccc-eeEEecCCceEEEEEEEeeecC
Q psy15127        208 SKSLDLSRRTLGWL----RVRPLYWNVARPRANLN-------------PRYIGRKMA-SLLIWNHPRVNRLSCFAEGSPL  269 (633)
Q Consensus       208 ~~~~~~~~~~~~~~----~~~g~y~C~a~~~~~~~-------------p~~~~~~~~-~~~~~~~g~~~~l~C~~~g~p~  269 (633)
                      ...   ....+.+.    ...|.|+|.|.|..+..             |.+...... ....+..|+.++|.|.+.|.|.
T Consensus       376 ~~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~  452 (772)
T 3v2a_R          376 TIK---AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPP  452 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEc---cceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCcEEEEeEeccCCC
Confidence            211   11222222    23589999999876532             111110000 1112567899999999999999


Q ss_pred             Ce-eEEEECCEEEEec-c-----------------------CC----ccceEEEc-----cCceEEEcCCCCCCCeEEEE
Q psy15127        270 PS-VFWTQEGSQVLMF-P-----------------------GN----AYGHLHVT-----QEGTLRIQGVQKEDAGFFVC  315 (633)
Q Consensus       270 ~~-v~W~~~g~~~~~~-~-----------------------~~----~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C  315 (633)
                      |. +.|++++...... .                       +.    ...+....     ....|.|.++  +|+|.|+|
T Consensus       453 p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C  530 (772)
T 3v2a_R          453 PHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKC  530 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEE
Confidence            96 9999974321000 0                       00    00000110     1136777776  68999999


Q ss_pred             EEEeCCceeEEEEEEEEEecccC-----------------------CCceEEeCCCcccc-----CC-------------
Q psy15127        316 SALSVAGSTTVRAFLQVREFCVL-----------------------PKGTFTLGQPNLAT-----GN-------------  354 (633)
Q Consensus       316 ~a~n~~g~~~~~~~l~v~~~~~~-----------------------p~p~~~~~~~~~~~-----g~-------------  354 (633)
                      .|.|..|..+..+.|.|...+.+                       |.+.+.|.......     +.             
T Consensus       531 ~a~N~~g~~~~~~~l~V~~~p~i~~~p~~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~  610 (772)
T 3v2a_R          531 EAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLW  610 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEccccccceeEEEEEECCceeeccCCcccccCCceEEEEeccCCCCCCcEEEEcCCcccccccCccccccccccccee
Confidence            99999998888887777643221                       22333443222100     00             


Q ss_pred             ------------CCCceEEecccccCCEEEEEEEEcCCccee--EEEEEEee--cCCCCCceecCCCCCCCCCCCCCcEE
Q psy15127        355 ------------SDLRRIACDLRETDSGLYTCTASSESGETS--WSASLSVE--PRPGPHAVHRMPDSGLFPGPPAAPVI  418 (633)
Q Consensus       355 ------------p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~--~~~~l~v~--~~p~~~~~~~~~~~~~~p~~p~~~~~  418 (633)
                                  ....+.|.++..+|+|.|+|.|.|..|...  ....|.|.  .+|..  .          ..+..  .
T Consensus       611 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~--~----------~~~~~--~  676 (772)
T 3v2a_R          611 KLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTI--T----------GNLEN--Q  676 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCCEe--e----------cCCCc--e
Confidence                        011267889999999999999999765443  33445553  22221  0          00111  0


Q ss_pred             EEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeE-EEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCC
Q psy15127        419 LNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWV-VAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIP  497 (633)
Q Consensus       419 ~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~  497 (633)
                      .......+.|.+....      .+..  .+.|...+..-.-. ..........+.|.++...+.+.|+|.|.|..|....
T Consensus       677 ~v~~g~~~~l~C~~~g------~P~p--~v~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~  748 (772)
T 3v2a_R          677 TTSIGESIEVSCTASG------NPPP--QIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKV  748 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEeCCCCEEEEEEeCc------cCCC--eEEEEECCeECcCCCCeEEcCCCcEEEECcCCHHHCEEEEEEEEeCCcceeE
Confidence            1111233444443221      0110  12222222100000 0001112467899999999999999999999998765


Q ss_pred             CC
Q psy15127        498 SP  499 (633)
Q Consensus       498 s~  499 (633)
                      +.
T Consensus       749 ~~  750 (772)
T 3v2a_R          749 EA  750 (772)
T ss_dssp             --
T ss_pred             EE
Confidence            43

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.97  E-value=5.9e-30  Score=267.67  Aligned_cols=375  Identities=14%  Similarity=0.164  Sum_probs=244.8

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeE-----EEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTI-----LWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i-----~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      +...|.+..+.+|+.++|.|.+.+ |.|.+     .|+|++..+...+.     ..|.|.+++. |+| |+|.|.+..+.
T Consensus         2 i~~~P~~~~v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~~~~~-----~~l~i~~v~~-d~g-Y~C~a~~~~~~   73 (450)
T 1z7z_I            2 TSVSPSKVILPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLPGNNR-----KVYELSNVQE-DSQ-PMCYSNCPDGQ   73 (450)
T ss_dssp             CEEESSEEEEETTEEEEEEEECCS-SCCCEEEECSSSCEEECCSSTTTE-----EEEEEEEECS-CBC-CEEEEEETTEE
T ss_pred             cccCCCceEEecCCcEEEEEEccC-CCcccccccceeeecceEecCCCc-----eEEEEEeccc-CCe-eEEEEeCCCCc
Confidence            456788899999999999999998 88888     99998876644332     3799999987 999 99999877777


Q ss_pred             EEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCC---eEEEEECCEEeccCCCeeEEeccceeeeEE---
Q psy15127        149 ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP---TLHWKKNGQFIDLESSKSLDLSRRTLGWLR---  222 (633)
Q Consensus       149 ~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~---~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~---  222 (633)
                      .+..+.|.|..++..+...+....+.+|+.+.|.|. ..+.|++   .|.|+|+|..+....... ......+.+..   
T Consensus        74 ~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~-~~g~~~~~~~~v~W~k~g~~l~~~~~~~-~~~~~~L~i~~~~~  151 (450)
T 1z7z_I           74 STAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQ-VEGGAPRANLTVVLLRGEKELKREPAVG-EPAEVTTTVLVRRD  151 (450)
T ss_dssp             EEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEE-EECCBCGGGEEEEEEETTEEEEEEECCT-TTEEEEEEEECCSS
T ss_pred             ceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEE-ecCCCCCcCcEEEEeeCCEEeecccccc-cccceEEEEEeecc
Confidence            888899999987344446777788999999999999 5676666   999999999886432110 00111233222   


Q ss_pred             -EeeeEEEEeecCCCCC----------C-cccc----ccccee---EEecCCceEEEEEEEeee-c--CCeeEEEECCEE
Q psy15127        223 -VRPLYWNVARPRANLN----------P-RYIG----RKMASL---LIWNHPRVNRLSCFAEGS-P--LPSVFWTQEGSQ  280 (633)
Q Consensus       223 -~~g~y~C~a~~~~~~~----------p-~~~~----~~~~~~---~~~~~g~~~~l~C~~~g~-p--~~~v~W~~~g~~  280 (633)
                       ..|.|+|.|.|..+..          + .+..    ...+..   ..+..|+.+.|.|.+.|. |  .+.+.|+++|..
T Consensus       152 ~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~  231 (450)
T 1z7z_I          152 HHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQR  231 (450)
T ss_dssp             CSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEE
T ss_pred             ccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEe
Confidence             2489999999885521          1 1100    011222   567789999999999999 6  689999999987


Q ss_pred             EEeccCCccceEEEccCceEEEc---CCCCCCCe--EEEEEEEeCCceeEEEEEEEEEeccc------------------
Q psy15127        281 VLMFPGNAYGHLHVTQEGTLRIQ---GVQKEDAG--FFVCSALSVAGSTTVRAFLQVREFCV------------------  337 (633)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d~G--~Y~C~a~n~~g~~~~~~~l~v~~~~~------------------  337 (633)
                      +..       ++....+. +.+.   ++..+|.|  .|+|.|.|..|..+..+.|.|...+.                  
T Consensus       232 ~~~-------~~~~~~~~-~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~~~~v~~G~~v~l  303 (450)
T 1z7z_I          232 LNP-------TVTYGNDS-FSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTV  303 (450)
T ss_dssp             CCC-------EEEEETTE-EEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEESCSEEETTCEEEE
T ss_pred             CCc-------eEEecCCc-eeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecCCeeEeCCCcEEE
Confidence            641       22222222 2222   67899999  99999999999998888888875211                  


Q ss_pred             ----CCCceEEeCCCccccCCCCCceEEecccccCCEEEEEEEEcCCc----ceeEEEEEEeecCCCCCceecCCCCCCC
Q psy15127        338 ----LPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESG----ETSWSASLSVEPRPGPHAVHRMPDSGLF  409 (633)
Q Consensus       338 ----~p~p~~~~~~~~~~~g~p~~~~~i~~~~~~d~g~y~c~a~n~~g----~~~~~~~l~v~~~p~~~~~~~~~~~~~~  409 (633)
                          .|.|.+.|.............+.|..+..+|.|.|+|.|.|..|    ..+.++.|.|..+|...           
T Consensus       304 ~C~~~p~p~i~W~g~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~-----------  372 (450)
T 1z7z_I          304 KCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLD-----------  372 (450)
T ss_dssp             EEEC----------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECC-----------
T ss_pred             EEecCCCCEeEECCEEcCCCCceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCcee-----------
Confidence                02233334000000111223578999999999999999997665    33466788887765441           


Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEE
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAE  489 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~  489 (633)
                       ..+............+.|.+....      .+..  .+.|...+.    .   .......+   .+...+.+.|+|.|.
T Consensus       373 -~~~~p~~~~~~~g~~~~l~C~~~g------~P~p--~i~W~~~g~----~---~~~~g~~~---~v~~~d~G~Y~C~a~  433 (450)
T 1z7z_I          373 -ERDCPGNWTWPENSQQTPMCQAWG------NPLP--ELKCLKDGT----F---PLPIGESV---TVTRDLEGTYLCRAR  433 (450)
T ss_dssp             -STTSCSEEEEETTCEECCCCCCEE------ESCC--EEEEEETTT----E---ECCTTSCE---ECCGGGCEEEEEEEE
T ss_pred             -eccCCCceeEcCCCeEEEEEeccc------CCCC--cEEEEECCc----c---cCCCCCeE---eEehhhCeEEEEEEE
Confidence             011001122334556666665422      1111  234444432    0   00111222   567788899999999


Q ss_pred             eccccCC
Q psy15127        490 NSHGLGI  496 (633)
Q Consensus       490 n~~G~g~  496 (633)
                      |..|...
T Consensus       434 N~~G~~~  440 (450)
T 1z7z_I          434 STQGEVT  440 (450)
T ss_dssp             ETTEEEE
T ss_pred             eCCCcee
Confidence            9999764

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.97  E-value=6e-31  Score=270.80  Aligned_cols=278  Identities=10%  Similarity=-0.002  Sum_probs=176.0

Q ss_pred             eEEEcCCCC--CCeEEEEEEe------------cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCC
Q psy15127         49 VLGARGALS--DDQWKLIAKE------------ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT  114 (633)
Q Consensus        49 ~L~i~~v~~--~G~Y~C~a~~------------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~  114 (633)
                      +|.|.+++.  +|.|+|.|.|            |..+|.+... ....+..|+.+.|.|.+.|.|.|.|+|+|++..+..
T Consensus       104 sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~-~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~  182 (423)
T 3qs7_E          104 SMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLR-RPYFRKMENQDALVCISESVPEPIVEWVLCDSQGES  182 (423)
T ss_dssp             EEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-----CEE-EEEEEECSSSSCEEEEEEESSCCEEEEEEC------
T ss_pred             EEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEecCcccccc-CCcEeccCCceEEEEEEeeecCCeEEEEECCCCCcc
Confidence            599999998  9999999999            3333433211 122356688899999999999999999999876532


Q ss_pred             CCeEEcccceEEEcc-CCCCCCeEEEEEEEeCCceEEE-EEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCC-CCC
Q psy15127        115 GRAKILDDRSLQIEN-VGPQDEGLYICDVENLVGSISL-RASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKG-QPE  191 (633)
Q Consensus       115 ~~~~~~~~~~L~i~~-v~~~d~G~Y~C~~~n~~g~~s~-~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~p~  191 (633)
                      ..... ....+.... ++..|+|.|+|.|.|..|.... .+.|.|... |.+  .+....+.+|+.+.|.|.+ .| .|.
T Consensus       183 ~~~~~-~~~~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~-p~~--~~~~~~v~~G~~v~L~C~~-~g~~p~  257 (423)
T 3qs7_E          183 CKEES-PAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQT-PQT--TLPQLFLKVGEPLWIRCKA-VHVNHG  257 (423)
T ss_dssp             --------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSC-CCS--STTEEEEETTSCEEEEEEE-EESSSC
T ss_pred             ccccc-cccccccceEEecccCeEEEEEEEcCCCCcceeeEEEEEecC-Ccc--CCCceEEeCCCeEEEEEEE-EcCCCC
Confidence            11000 000010101 1678999999999999988543 466666655 333  4557788999999999995 55 788


Q ss_pred             CeEEEEECCEEeccCCCe---eE-----EeccceeeeEEE----eeeEEEEeecCCC--------CCCcccccccceeEE
Q psy15127        192 PTLHWKKNGQFIDLESSK---SL-----DLSRRTLGWLRV----RPLYWNVARPRAN--------LNPRYIGRKMASLLI  251 (633)
Q Consensus       192 ~~i~W~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~----~g~y~C~a~~~~~--------~~p~~~~~~~~~~~~  251 (633)
                      +.|.|++++..+......   ..     ......|.+..+    .|.|+|.|.|...        ..|.+..........
T Consensus       258 p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~~~~~~L~V~~~p~i~~~~~~~~~~  337 (423)
T 3qs7_E          258 FGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYE  337 (423)
T ss_dssp             CCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTEEEEEEEEEEESSCEEEEC---CEEC
T ss_pred             cEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecCCCceEEEEEEeCCcceEcCCCccEE
Confidence            999999999876443111   00     111112222222    4899999999711        111111111123455


Q ss_pred             ecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy15127        252 WNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  331 (633)
Q Consensus       252 ~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  331 (633)
                      +.+|+.+.|.|.+.|+|.|.+.|+|+|..+......      ......+.+.....+|+|.|+|.|.|..|..+.++.|.
T Consensus       338 v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~------~~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~  411 (423)
T 3qs7_E          338 IDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG------LDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN  411 (423)
T ss_dssp             CCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCB------CSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC
T ss_pred             ecCCCeEEEEEEEEEcCCCeEEEEECCEECCCcccc------ccCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEE
Confidence            678999999999999999999999999988532100      00111222355677899999999999999999999999


Q ss_pred             EEecccC
Q psy15127        332 VREFCVL  338 (633)
Q Consensus       332 v~~~~~~  338 (633)
                      |...+..
T Consensus       412 v~~~p~~  418 (423)
T 3qs7_E          412 IRSGTKH  418 (423)
T ss_dssp             -------
T ss_pred             EecCCcc
Confidence            9865443

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.97  E-value=3.1e-30  Score=253.08  Aligned_cols=261  Identities=25%  Similarity=0.344  Sum_probs=198.1

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccC-CCeEEEEe-CCccCCCC--CeEEc----ccceEEEccCCCCCCeEEEEEE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDP-LPTILWRR-DDGKMPTG--RAKIL----DDRSLQIENVGPQDEGLYICDV  142 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p-~p~i~W~~-~~~~i~~~--~~~~~----~~~~L~i~~v~~~d~G~Y~C~~  142 (633)
                      ++.+...|.+..+.+|+.++|.|.+.+.+ .+.+.|+| +|..+...  +....    ....|.|.+++.+|+|.|+|.+
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~   81 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEE
Confidence            56788899999999999999999999876 68999999 77777532  33332    2468999999999999999999


Q ss_pred             EeCCce-EEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCe-eEEeccceeee
Q psy15127        143 ENLVGS-ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK-SLDLSRRTLGW  220 (633)
Q Consensus       143 ~n~~g~-~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~~  220 (633)
                      .|..|. .+..+.|.|..+ |.+...+....+.+|+.+.|.|. ..+.|.+.+.|++++..+...... ........+.+
T Consensus        82 ~n~~g~~~~~~~~l~v~~~-~~~~~~~~~~~~~~g~~v~l~C~-~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i  159 (291)
T 1qz1_A           82 TAEDGTQSEATVNVKIFQK-LMFKNAPTPQEFKEGEDAVIVCD-VVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI  159 (291)
T ss_dssp             ECTTSCEEEEEEEEEEECC-SEEEECCSSEEEETTSCEEECCE-EECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEE
T ss_pred             EcCCCCeeEEEEEEEeecc-ccccCCCCcccccCCCeEEEEEE-eccCCCCEEEEEECCEEcccCCCceEEEccCCcEEE
Confidence            998854 577888888877 77778888889999999999999 578899999999999877543322 22223333333


Q ss_pred             EE----EeeeEEEEeecCCCCC-------------CcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEe
Q psy15127        221 LR----VRPLYWNVARPRANLN-------------PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLM  283 (633)
Q Consensus       221 ~~----~~g~y~C~a~~~~~~~-------------p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~  283 (633)
                      ..    ..|.|+|.+.|..+..             |.+..........+..|+.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus       160 ~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~  239 (291)
T 1qz1_A          160 RGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIEN  239 (291)
T ss_dssp             TTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCC
T ss_pred             ccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcC
Confidence            22    2489999999865321             111111122234567899999999999999999999999998753


Q ss_pred             ccCCccceEEEc-cCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEe
Q psy15127        284 FPGNAYGHLHVT-QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE  334 (633)
Q Consensus       284 ~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  334 (633)
                      .... ..+.... ....|.|.++..+|+|.|+|.|.|..|..+..+.|.|..
T Consensus       240 ~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  290 (291)
T 1qz1_A          240 EEED-DEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA  290 (291)
T ss_dssp             C--C-CSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCCC-CcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence            2110 1233333 345799999999999999999999999999999988863

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.97  E-value=1.7e-30  Score=267.82  Aligned_cols=284  Identities=21%  Similarity=0.290  Sum_probs=204.4

Q ss_pred             eCceEEEc----CCCC--CCeEEEEEEe-------------cCcCCeee-eCCCceEEEcCCeEEEEEEE-eccCCCeEE
Q psy15127         46 FGSVLGAR----GALS--DDQWKLIAKE-------------ALIKPFPI-SEPSDATVLSGSVVEFVCRV-GGDPLPTIL  104 (633)
Q Consensus        46 ~~~~L~i~----~v~~--~G~Y~C~a~~-------------v~~~p~~~-~~~~~~~~~~G~~~~L~C~~-~~~p~p~i~  104 (633)
                      .+++|.|.    +++.  +|.|+|.|.|             +..+|.+. ..+....+.+|+.++|.|.+ .+.|.+.+.
T Consensus        71 ~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~  150 (404)
T 3p3y_A           71 RSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIF  150 (404)
T ss_dssp             SSCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEE
T ss_pred             CCceEEEEeccCCCCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEE
Confidence            45778775    6665  9999999988             33344432 33345789999999999999 788999999


Q ss_pred             EEeCCccC-CC-CCeEEcccceEEEccCCCCC-CeEEEEEEEeCCceE---EEEEEEEEEee------ccccccCC---C
Q psy15127        105 WRRDDGKM-PT-GRAKILDDRSLQIENVGPQD-EGLYICDVENLVGSI---SLRASLTVHLL------RDDFRAEP---K  169 (633)
Q Consensus       105 W~~~~~~i-~~-~~~~~~~~~~L~i~~v~~~d-~G~Y~C~~~n~~g~~---s~~~~l~V~~~------~p~~~~~~---~  169 (633)
                      |++++... .. .+.....++.|.|.+++.+| +|.|+|.+.|..+..   +..+.|.|...      +|.+...+   .
T Consensus       151 W~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~  230 (404)
T 3p3y_A          151 WMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTAS  230 (404)
T ss_dssp             EECTTSCBCCCCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEE
T ss_pred             EeCCCccccCCCCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCC
Confidence            99987543 33 34455567899999999999 599999999987763   22345666532      13333222   2


Q ss_pred             ceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEE----eeeEEEEeecCCCCCCcc---c
Q psy15127        170 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV----RPLYWNVARPRANLNPRY---I  242 (633)
Q Consensus       170 ~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~y~C~a~~~~~~~p~~---~  242 (633)
                      ...+.+|+.+.|.|. ..+.|.+.+.|+++|..+..... ........+.+..+    .|.|+|.|.|..+.....   .
T Consensus       231 ~~~~~~G~~v~l~C~-~~g~p~~~v~W~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  308 (404)
T 3p3y_A          231 SQMVLRGMDLLLECI-ASGVPTPDIAWYKKGGDLPSDKA-KFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVR  308 (404)
T ss_dssp             EEEEETTSCEEEECC-BCCSSCCEEEEEETTBCCCTTTE-EEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred             CceEecCCCEEEEEE-ECCCCCCcEEEEECCEECCCCcc-cccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEE
Confidence            356889999999999 68889999999999988765433 22222333333222    489999999987642110   0


Q ss_pred             c------cccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEE
Q psy15127        243 G------RKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS  316 (633)
Q Consensus       243 ~------~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  316 (633)
                      .      ........+..|+.++|.|.+.|.|.+.+.|+++|..+.....  .... ...++.|.|.++..+|+|.|+|.
T Consensus       309 V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~--~~~~-~~~~~~L~i~~v~~~d~G~Y~C~  385 (404)
T 3p3y_A          309 VKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPP--NPNR-EVAGDTIIFRDTQISSRAVYQCN  385 (404)
T ss_dssp             EEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCC--CTTE-EEETTEEEESSCCSSCCCEEEEE
T ss_pred             EeCCCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCC--CceE-EecCCEEEEeecCHHHCEEEEEE
Confidence            0      1112234567899999999999999999999999998753211  1122 22456899999999999999999


Q ss_pred             EEeCCceeEEEEEEEEEe
Q psy15127        317 ALSVAGSTTVRAFLQVRE  334 (633)
Q Consensus       317 a~n~~g~~~~~~~l~v~~  334 (633)
                      |.|..|.....+.|.|.+
T Consensus       386 a~N~~G~~~~~~~l~V~d  403 (404)
T 3p3y_A          386 TSNEHGYLLANAFVSVLD  403 (404)
T ss_dssp             EEETTEEEEEEEEEEEC-
T ss_pred             EEeCCCcEEEEEEEEEEe
Confidence            999999999999998864

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.97  E-value=1e-29  Score=251.00  Aligned_cols=258  Identities=27%  Similarity=0.418  Sum_probs=188.8

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEc--cc---ceEEEccCCC-CCCeEEEEEE
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL--DD---RSLQIENVGP-QDEGLYICDV  142 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~--~~---~~L~i~~v~~-~d~G~Y~C~~  142 (633)
                      ..+|.|...|.+..+.+|+.++|.|.+.|.|.+.|+|+|+|..+...+....  .+   ..|.|.+++. +|+|.|+|.|
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a   83 (304)
T 2yd9_A            4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVA   83 (304)
T ss_dssp             CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEE
T ss_pred             ccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEEE
Confidence            4689999999999999999999999999999999999999998877665443  22   5799999998 9999999999


Q ss_pred             EeCCceEEEEEEEEEEeec------cccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCC--eeEEec
Q psy15127        143 ENLVGSISLRASLTVHLLR------DDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS--KSLDLS  214 (633)
Q Consensus       143 ~n~~g~~s~~~~l~V~~~~------p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~--~~~~~~  214 (633)
                      .|..|..+..+.|.|...+      |.+...+....+.+|+.+.|.|. ..|.|.+.+.|++++..+.....  ......
T Consensus        84 ~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~-~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~  162 (304)
T 2yd9_A           84 QNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCA-ASGNPDPEITWFKDFLPVDPSASNGRIKQLR  162 (304)
T ss_dssp             ECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCE-EECSSCCEEEEEETTEECCGGGGTTSEEECT
T ss_pred             ECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEE-CccCCCCeEEEEECCEECcCCCCcceEEeCC
Confidence            9999998888999998752      45566677778999999999999 58889999999999998865322  111222


Q ss_pred             cceeeeEEE----eeeEEEEeecCCCCCC----ccccc---cc------ceeEEecCCceEEEEEEEeeecCCeeEEEEC
Q psy15127        215 RRTLGWLRV----RPLYWNVARPRANLNP----RYIGR---KM------ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQE  277 (633)
Q Consensus       215 ~~~~~~~~~----~g~y~C~a~~~~~~~p----~~~~~---~~------~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~  277 (633)
                      ...+.+..+    .|.|+|.|.|..+...    .+...   ..      .....+..|+.++|.|.+.|.|.|.+.|+++
T Consensus       163 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~  242 (304)
T 2yd9_A          163 SGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQG  242 (304)
T ss_dssp             TSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEET
T ss_pred             CeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEEC
Confidence            333333322    4899999999876421    11111   00      1112356789999999999999999999999


Q ss_pred             CEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEec
Q psy15127        278 GSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREF  335 (633)
Q Consensus       278 g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  335 (633)
                      |..+....     .. ......|.|.++  +|+|.|+|.|.|..|..+.++.|.|...
T Consensus       243 ~~~l~~~~-----~~-~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  292 (304)
T 2yd9_A          243 AEDLTPED-----DM-PVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSL  292 (304)
T ss_dssp             TEECSCSS-----SC-CBSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC----
T ss_pred             CEECCCcc-----cc-cCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecC
Confidence            98774211     11 112224777765  6899999999999999999999998753

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.97  E-value=7.2e-30  Score=261.02  Aligned_cols=299  Identities=22%  Similarity=0.284  Sum_probs=211.5

Q ss_pred             CCCccccccceeeEEEEecccCCC--CCceEEeeCceEEEcCCC--C-CCeEEEEEEe-------------cCcCCeee-
Q psy15127         15 SPRAEIEPATRTNRVSISGDPGFD--SRRSRSIFGSVLGARGAL--S-DDQWKLIAKE-------------ALIKPFPI-   75 (633)
Q Consensus        15 ~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~i~~v~--~-~G~Y~C~a~~-------------v~~~p~~~-   75 (633)
                      +|.+.|+|+       .+|.+...  ..++.+ .+++|.|.++.  . +|.|+|.|.|             +...|.+. 
T Consensus        34 ~p~~~v~W~-------k~g~~~~~~~~~~~~~-~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~  105 (382)
T 1cs6_A           34 NPPATYRWK-------MNGTELKMGPDSRYRL-VAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSA  105 (382)
T ss_dssp             ESCCEEEEE-------ETTEECCCSTTSSEEE-ETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCCS
T ss_pred             CCCCEEEEE-------ECCEECCcCCCccEEe-eCCeEEEecccccccCEEEEEEEEcCCcEEEecceEEEeeccccccc
Confidence            455666643       34444332  345544 46899999987  3 9999999998             11222222 


Q ss_pred             eCCCceEEEcCCeEEEEEEE-eccCCCeEEEEeCCccCC---CCCeEEc-ccceEEEccCCCCCCeEEEEEEEeCCceE-
Q psy15127         76 SEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMP---TGRAKIL-DDRSLQIENVGPQDEGLYICDVENLVGSI-  149 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~-~~~p~p~i~W~~~~~~i~---~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~-  149 (633)
                      ..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.   ..+.... .++.|.|.+++.+|+|.|+|.+.|..|.. 
T Consensus       106 ~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~  185 (382)
T 1cs6_A          106 EERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFIT  185 (382)
T ss_dssp             SCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             cCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCceEEEEEeeCcccCeeEEEEEEEcccccc
Confidence            23456789999999999996 456888999999998752   2333333 34789999999999999999999876432 


Q ss_pred             ----EEEEEEEEEee-----cccccc-CCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccC---CCeeEEeccc
Q psy15127        150 ----SLRASLTVHLL-----RDDFRA-EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLE---SSKSLDLSRR  216 (633)
Q Consensus       150 ----s~~~~l~V~~~-----~p~~~~-~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~---~~~~~~~~~~  216 (633)
                          +..+.|.|...     +|.+.. .+....+.+|+.+.|.|. ..+.|.+.+.|++++..+...   ....+.+.+.
T Consensus       186 ~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~-~~g~p~~~i~W~~~~~~~~~~~~~~~~~L~i~~~  264 (382)
T 1cs6_A          186 KSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECF-AFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNV  264 (382)
T ss_dssp             EEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECE-EEEESCCEEEEEECCSCCSCCCSBSSSEEEECSC
T ss_pred             ceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEE-EccCCCCEEEEEECCcccccEEecCCcEEEEccC
Confidence                22344554321     244433 456778899999999999 578899999999988765431   1122222222


Q ss_pred             eeeeEEEeeeEEEEeecCCCCC-----------CcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEecc
Q psy15127        217 TLGWLRVRPLYWNVARPRANLN-----------PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFP  285 (633)
Q Consensus       217 ~~~~~~~~g~y~C~a~~~~~~~-----------p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~  285 (633)
                      ...   ..|.|+|.|.|..+..           |.+..  ......+..|+.+.|.|.+.|.|.+.+.|+++|..+..  
T Consensus       265 ~~~---d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~--~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~--  337 (382)
T 1cs6_A          265 DFE---DEGTYECEAENIKGRDTYQGRIIIHAQPDWLD--VITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLAS--  337 (382)
T ss_dssp             CGG---GCEEEEEEEEETTEEEEEEEEEEEEEEEEEEE--CCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCC--
T ss_pred             Chh---hCEEEEEEEEcCCCeEEEEEEEEEecCCCccc--CCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCC--
Confidence            222   2589999999987642           11111  11234566899999999999999999999999988742  


Q ss_pred             CCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127        286 GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR  333 (633)
Q Consensus       286 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  333 (633)
                         ..++.. .++.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       338 ---~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          338 ---QNRIEV-SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             ---CSSEEE-ETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ---CceEEE-ECCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence               133333 35689999999999999999999999999999998885

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.97  E-value=3.5e-29  Score=256.55  Aligned_cols=331  Identities=19%  Similarity=0.205  Sum_probs=211.7

Q ss_pred             CCCCccccccceeeEEEEecccCCCCCceEEee---CceEEEcCCCC--CCeEEEEEEe------------cCcCCeeee
Q psy15127         14 SSPRAEIEPATRTNRVSISGDPGFDSRRSRSIF---GSVLGARGALS--DDQWKLIAKE------------ALIKPFPIS   76 (633)
Q Consensus        14 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~--~G~Y~C~a~~------------v~~~p~~~~   76 (633)
                      +.|.+.|+|+.......+.........|+.+..   +++|.|.+++.  +|.|+|.|.|            |..+|.+..
T Consensus        26 g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~P~~~~  105 (389)
T 2jll_A           26 GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFIS  105 (389)
T ss_dssp             CSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECC
T ss_pred             cccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCCCcceEEEEEEEeCCEEec
Confidence            456777886554212222222222245666543   46899999998  9999999988            566788877


Q ss_pred             CCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC---CeEEcc---cceEEEccCCCCCCeEEEEEEEeCCceEE
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILD---DRSLQIENVGPQDEGLYICDVENLVGSIS  150 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~---~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s  150 (633)
                      .+....+.+|+.+.|.|.+.|.|.+.++|+|++..+...   +.....   ...|.|.+++.+|+|.|+|.|.|..|..+
T Consensus       106 ~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~  185 (389)
T 2jll_A          106 NQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRF  185 (389)
T ss_dssp             SCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEE
T ss_pred             CcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEE
Confidence            666667899999999999999999999999999988653   333332   34799999999999999999999999988


Q ss_pred             EEEEEEEEeeccccccCCCceE--EecCCcEEEEEeCCC---CCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEEee
Q psy15127        151 LRASLTVHLLRDDFRAEPKDTR--VASGETALLECGPPK---GQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP  225 (633)
Q Consensus       151 ~~~~l~V~~~~p~~~~~~~~~~--~~~g~~~~l~C~~~~---~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  225 (633)
                      ..+.|.|..+ |.   .|....  ...+..+.|.|....   +.|...+                               
T Consensus       186 ~~~~l~v~~~-P~---~P~~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y-------------------------------  230 (389)
T 2jll_A          186 QEYILALADV-PS---SPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHY-------------------------------  230 (389)
T ss_dssp             EEEEEEECCC-CC---CCEEEEEEEECSSCEEEEEECCSCCTTSCEEEE-------------------------------
T ss_pred             EEEEEEecCC-CC---CCcceEEeeccCCEEEEEEeCCCCCCCcceEEE-------------------------------
Confidence            8888877655 32   222221  123456667665211   1111100                               


Q ss_pred             eEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEE-ccCceEEEcC
Q psy15127        226 LYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV-TQEGTLRIQG  304 (633)
Q Consensus       226 ~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~-~~~~~l~i~~  304 (633)
                                                                   .+.|.+++...       ...... .....|.|.+
T Consensus       231 ---------------------------------------------~v~~~~~~~~~-------~~~~~~~~~~~~~~i~~  258 (389)
T 2jll_A          231 ---------------------------------------------QVDVKEVASEI-------WKIVRSHGVQTMVVLNN  258 (389)
T ss_dssp             ---------------------------------------------EEEEEETTCSC-------CEEEECSTTCSEEEECS
T ss_pred             ---------------------------------------------EEEEEECCCcc-------cEEeeccCCcceEEECC
Confidence                                                         12333332200       000000 0223577777


Q ss_pred             CCCCCCeEEEEEEEeCCceeEEEEEEEEEecccCCCceEEeCCCccccCCCCCceEEecccccCCEEEEEEEEcCCccee
Q psy15127        305 VQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETS  384 (633)
Q Consensus       305 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~p~~~~~~~~~~~g~p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~  384 (633)
                      +...+.|.|.|.|.|..|....+..                                                       
T Consensus       259 l~~~~~y~~~v~A~N~~G~~~~s~~-------------------------------------------------------  283 (389)
T 2jll_A          259 LEPNTTYEIRVAAVNGKGQGDYSKI-------------------------------------------------------  283 (389)
T ss_dssp             CCTTCEEEEEEEEEESSCBCCCCCC-------------------------------------------------------
T ss_pred             ccCCCEEEEEEEEEcCCccCCCCcc-------------------------------------------------------
Confidence            7777777777777776664322211                                                       


Q ss_pred             EEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeE-EEE
Q psy15127        385 WSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWV-VAA  463 (633)
Q Consensus       385 ~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~-~~~  463 (633)
                          +.+...+.           ..|.+| .+.......+++.|+|.++.+   +++++.+|.|+|+..+. ..|. ...
T Consensus       284 ----~~~~t~~~-----------~~p~~p-~~~~~~~~~~~v~l~W~~p~~---~~~~i~~Y~v~~~~~~~-~~~~~~~~  343 (389)
T 2jll_A          284 ----EIFQTLPV-----------REPSPP-SIHGQPSSGKSFKLSITKQDD---GGAPILEYIVKYRSKDK-EDQWLEKK  343 (389)
T ss_dssp             ----EEEECCCC-----------CCCCCC-CEEEEEETTTEEEEEECCCCC---CSSCCCEEEEEEEC------CCBCCE
T ss_pred             ----eEEEecCC-----------CCCCCC-ccccccCcCCEEEEEEECCCC---CCCcccEEEEEEEeCCC-CcceeEee
Confidence                11111111           013344 345555688999999999863   36899999999998543 3343 222


Q ss_pred             EeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCceeecC
Q psy15127        464 HRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLG  508 (633)
Q Consensus       464 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~  508 (633)
                      .......++|.+|.|++.|.|+|+|.|..|.|+++...  ++|.+
T Consensus       344 ~~~~~~~~~i~~L~~~t~Y~~~V~A~n~~G~s~~s~~~--~~T~~  386 (389)
T 2jll_A          344 VQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYE--FSMPP  386 (389)
T ss_dssp             ECTTCCEEEECSCCTTCEEEEEEEEEC-CCBCCCEEEE--EECCC
T ss_pred             ccCCcceEEeCCcCCCCEEEEEEEEEcCCcCCCceeeE--ecCCC
Confidence            33456789999999999999999999999999988653  55533

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.97  E-value=2.7e-29  Score=246.46  Aligned_cols=257  Identities=23%  Similarity=0.330  Sum_probs=194.2

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEe-CCccCCCC-CeEEccc---ceEEEccCCCCCCeEEEEEEEe
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRR-DDGKMPTG-RAKILDD---RSLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~-~~~~i~~~-~~~~~~~---~~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                      .+|.+...+.++.+.+|+.++|.|.+.+.|. .+.|++ +|..+..+ +.....+   ..|.|.+++.+|+|.|+|.+.|
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n   81 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD   81 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEec
Confidence            4688999999999999999999999998774 899999 67766543 3333333   4899999999999999999999


Q ss_pred             CCceE-EEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCe-eEEeccceeeeEE
Q psy15127        145 LVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK-SLDLSRRTLGWLR  222 (633)
Q Consensus       145 ~~g~~-s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~  222 (633)
                      ..|.. +..+.|.|..+ |.+...+....+.+|+.+.|.|. ..+.|.+.+.|++++..+...... ........+.+..
T Consensus        82 ~~g~~~~~~~~l~v~~~-~~~~~~~~~~~v~~G~~v~l~C~-~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~  159 (291)
T 2wim_A           82 AKGQTQEATVVLEIYQK-LTFREVVSPQEFKQGEDAEVVCR-VSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN  159 (291)
T ss_dssp             SSSCEEEEEEEEEEECC-CBCCSCCCSEEEETTSCEEECCC-CBCSSCCEEEEECC----CBCCCSSEEECTTSCEEETT
T ss_pred             ccCceEEEEEEEEecCC-cceEeCCCChhhcCCCCEEEEEE-EccCCCCEEEEEECCccccccCCceEEEccCCCEEEEe
Confidence            88875 56778888877 77777778888999999999999 678899999999999887653322 2222333333322


Q ss_pred             E----eeeEEEEeecCCCC-------------CCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEecc
Q psy15127        223 V----RPLYWNVARPRANL-------------NPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFP  285 (633)
Q Consensus       223 ~----~g~y~C~a~~~~~~-------------~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~  285 (633)
                      +    .|.|+|.+.+..+.             +|.+..........+..|+.+.|.|.+.|.|.+.+.|+++|..+..  
T Consensus       160 v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~--  237 (291)
T 2wim_A          160 INKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEE--  237 (291)
T ss_dssp             CCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCC--
T ss_pred             cchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcC--
Confidence            2    48999999887632             2222222222234566899999999999999999999999987742  


Q ss_pred             CCccceEEEc-cCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEe
Q psy15127        286 GNAYGHLHVT-QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE  334 (633)
Q Consensus       286 ~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  334 (633)
                         ..+.... .+..|.|.++..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus       238 ---~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~  284 (291)
T 2wim_A          238 ---NEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV  284 (291)
T ss_dssp             ---TTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC--
T ss_pred             ---CccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEE
Confidence               1223332 356899999999999999999999999999999999875

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.97  E-value=2.4e-28  Score=260.62  Aligned_cols=312  Identities=15%  Similarity=0.162  Sum_probs=201.7

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccCC-------------CCCeEEcc---cceEEEccCCCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKMP-------------TGRAKILD---DRSLQIENVGPQDE  135 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i~-------------~~~~~~~~---~~~L~i~~v~~~d~  135 (633)
                      ++.+|..+.+.+|+.++|.|.+.+.|.+.+.|+|++  ..+.             .+++....   ...|.|.+++.+|+
T Consensus         3 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   82 (523)
T 2rcj_C            3 VLTQPPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDE   82 (523)
T ss_pred             ccccCCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhC
Confidence            345677889999999999999998889999999975  2211             12333221   24799999999999


Q ss_pred             eEEEEEEEeCCce---EEEEEEEEEEe---eccccccCCCceEEecCCcEEEEEeCCCCCCC--CeEEEEECCEEeccCC
Q psy15127        136 GLYICDVENLVGS---ISLRASLTVHL---LRDDFRAEPKDTRVASGETALLECGPPKGQPE--PTLHWKKNGQFIDLES  207 (633)
Q Consensus       136 G~Y~C~~~n~~g~---~s~~~~l~V~~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~i~W~~~~~~~~~~~  207 (633)
                      |.|+|.|.|..|.   ....+.|.|..   .+|.+...+....+.+|+.+.|.|.+ .|.|+  +.|.|+++|..+....
T Consensus        83 G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~-~g~~p~~~~v~W~k~g~~l~~~~  161 (523)
T 2rcj_C           83 SDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLI-SDFYPGAVTVAWKADGSPVKAGV  161 (523)
T ss_pred             EEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEe-ccccCCceEEEEecCCCCCCCce
Confidence            9999999997653   34556777742   22666666666677789999999995 55544  3999999998775432


Q ss_pred             CeeE--Eecc------ceeeeEE----EeeeEEEEeecCCCCCCcccc-------cccce------eEEecCCceEEEEE
Q psy15127        208 SKSL--DLSR------RTLGWLR----VRPLYWNVARPRANLNPRYIG-------RKMAS------LLIWNHPRVNRLSC  262 (633)
Q Consensus       208 ~~~~--~~~~------~~~~~~~----~~g~y~C~a~~~~~~~p~~~~-------~~~~~------~~~~~~g~~~~l~C  262 (633)
                      ....  ....      ..+.+..    ..|.|+|.|.|..+.......       ...+.      ......|+.+.|.|
T Consensus       162 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C  241 (523)
T 2rcj_C          162 ETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGC  241 (523)
T ss_pred             EeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEecCCCcccccCCceEEEE
Confidence            1110  0011      1233332    258999999997653211110       00011      11235789999999


Q ss_pred             EEeee-cCC-eeEEEECCEEEEeccCCccceEEE-----ccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEec
Q psy15127        263 FAEGS-PLP-SVFWTQEGSQVLMFPGNAYGHLHV-----TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREF  335 (633)
Q Consensus       263 ~~~g~-p~~-~v~W~~~g~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  335 (633)
                      .+.|. |.| .+.|+++|..+....   ..+...     ...+.|.|.++..+| |.|+|.|.|..|.......+.+...
T Consensus       242 ~~~g~~P~p~~v~W~k~g~~~~~~~---~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~  317 (523)
T 2rcj_C          242 LVKDYFPQPVTVSWNSGALTSGVHT---FPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSL  317 (523)
T ss_pred             EEeceeCCCeEEEEecCCcccceEe---CCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcC
Confidence            99887 777 899999997643110   011110     112379999999999 9999999999998765555543211


Q ss_pred             c--------------------------cC-CC---ceEEeCCCccccCCC---------C------CceEEecccccCCE
Q psy15127        336 C--------------------------VL-PK---GTFTLGQPNLATGNS---------D------LRRIACDLRETDSG  370 (633)
Q Consensus       336 ~--------------------------~~-p~---p~~~~~~~~~~~g~p---------~------~~~~i~~~~~~d~g  370 (633)
                      +                          .. |+   +.+.|..........         .      ..+.|..+..+|+|
T Consensus       318 P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G  397 (523)
T 2rcj_C          318 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGK  397 (523)
T ss_pred             ceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCC
Confidence            1                          00 11   244443332211000         0      11356667778999


Q ss_pred             EEEEEEEcCCcceeEEEEEE
Q psy15127        371 LYTCTASSESGETSWSASLS  390 (633)
Q Consensus       371 ~y~c~a~n~~g~~~~~~~l~  390 (633)
                      .|+|.|.|..|.......+.
T Consensus       398 ~Y~C~a~n~~~~~~~~~~~~  417 (523)
T 2rcj_C          398 EYKCKVSNKALPAPIEKTIS  417 (523)
T ss_pred             eEEEEEeCCCCCCceeEEEE
Confidence            99999999988765555554

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.97  E-value=5.3e-30  Score=259.89  Aligned_cols=296  Identities=12%  Similarity=0.111  Sum_probs=206.2

Q ss_pred             cccCCCCCCCCCCccccccceeeEEEEeccc-------CCCCCceEEee------CceEEEcCCCC--CCeEEEEEEec-
Q psy15127          5 LDTNHAHPMSSPRAEIEPATRTNRVSISGDP-------GFDSRRSRSIF------GSVLGARGALS--DDQWKLIAKEA-   68 (633)
Q Consensus         5 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~~~~~~~~~~------~~~L~i~~v~~--~G~Y~C~a~~v-   68 (633)
                      +.+.|... +.|.+.|+|+...........+       .....|+.+..      +++|.|.+++.  +|.|+|.|.|. 
T Consensus        12 v~L~C~~~-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~   90 (363)
T 1wio_A           12 VELTCTAS-QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQK   90 (363)
T ss_dssp             EEECCCCT-TCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEEEEEETTEE
T ss_pred             EEEEEEec-CCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEEEEEEEECC
Confidence            34455543 5678889977654321111111       12234555432      56799999998  99999999881 


Q ss_pred             -----CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEE
Q psy15127         69 -----LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVE  143 (633)
Q Consensus        69 -----~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~  143 (633)
                           ... .+...| ...+.+|+.++|.|.+.+.|.|.++|++++..+      ...+..|.|.+++.+|+|.|+|.|.
T Consensus        91 ~~~~l~V~-~~~~~~-~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~------~~~~~~L~i~~v~~~d~G~Y~C~a~  162 (363)
T 1wio_A           91 EEVQLLVF-GLTANS-DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN------IQGGKTLSVSQLELQDSGTWTCTVL  162 (363)
T ss_dssp             EEEEEEEE-EEEESS-CSSEESBSCEEEEEECCTTCCCCEEEECSSSCE------EEESSEEEECSBCGGGCEECEEEEE
T ss_pred             CcEEEEEE-eCCCCC-ceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc------cccceEEEEeeCChhcCCEEEEEEe
Confidence                 111 122333 346899999999999988999999999987653      3356799999999999999999999


Q ss_pred             eCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCC-----CCCCeEEEEECCEEeccC-------CCeeE
Q psy15127        144 NLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKG-----QPEPTLHWKKNGQFIDLE-------SSKSL  211 (633)
Q Consensus       144 n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-----~p~~~i~W~~~~~~~~~~-------~~~~~  211 (633)
                      |..+..+..+.|.|..+ |..   +....+.+|+.+.|.|.+ .+     .|.+.+.|+++|..+...       .....
T Consensus       163 ~~~~~~~~~~~l~v~~~-p~~---~~~~~~~~G~~v~l~C~~-~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~  237 (363)
T 1wio_A          163 QNQKKVEFKIDIVVLAF-QKA---SSIVYKKEGEQVEFSFPL-AFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVS  237 (363)
T ss_dssp             ETTEEEEECCEECEECC-SCS---EEEEEEETBCCEEEECCC-CCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEE
T ss_pred             cCCCeEEEEEEEEEecC-CCC---CCceEEecCCEEEEEEEE-ecccccCCCceeEEEecCCCCccceEEEEEecCCeee
Confidence            98777777778888765 332   255678899999999984 44     778899999999876542       22111


Q ss_pred             Ee-----------c--cceeeeEEE----eeeEEEEeecC--CCCCCcccccccceeEEecCCceEEEEEEEeeecCCe-
Q psy15127        212 DL-----------S--RRTLGWLRV----RPLYWNVARPR--ANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPS-  271 (633)
Q Consensus       212 ~~-----------~--~~~~~~~~~----~g~y~C~a~~~--~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~-  271 (633)
                      ..           .  ...+.+..+    .|.|+|.|.|.  .+...    ....-.+....|+.+.|.|.+.|.|+|. 
T Consensus       238 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~----~~~~l~V~~v~g~~~~l~C~~~g~p~p~~  313 (363)
T 1wio_A          238 VKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLH----QEVNLVVMRATQLQKNLTCEVWGPTSPKL  313 (363)
T ss_dssp             EEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEE----EEEEEEEEEECCCSSSEEEEEESSCCTTC
T ss_pred             ccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEE----EEEeEEEEEecCCCeeEEEEEccccCCCc
Confidence            10           1  113333222    48999999999  66321    1111111123489999999999999988 


Q ss_pred             -eEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127        272 -VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       272 -v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                       +.|+++|..+.             ....|.|.++..+|+|.|+|.|.|. |....+..+.|
T Consensus       314 ~i~W~~~~~~~~-------------~~~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V  361 (363)
T 1wio_A          314 MLSLKLENKEAK-------------VSKREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKV  361 (363)
T ss_dssp             CEEEECSSSSCS-------------EEESSSEEEESSCCSEEEEEEECSS-SSCCEEEEEEE
T ss_pred             cEEEEeCCCcee-------------eeeeeeeeeeccccceeEEEEEecC-CeEEEecceEe
Confidence             99999997553             1346788999999999999999964 55556666655

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.97  E-value=7.4e-31  Score=294.04  Aligned_cols=432  Identities=16%  Similarity=0.132  Sum_probs=101.0

Q ss_pred             CceEEEcCCCC--CCeEEEEEEe----------cC--cCCee---eeCCCceEEEcC--CeEEEEEEEeccCCCeEEEEe
Q psy15127         47 GSVLGARGALS--DDQWKLIAKE----------AL--IKPFP---ISEPSDATVLSG--SVVEFVCRVGGDPLPTILWRR  107 (633)
Q Consensus        47 ~~~L~i~~v~~--~G~Y~C~a~~----------v~--~~p~~---~~~~~~~~~~~G--~~~~L~C~~~~~p~p~i~W~~  107 (633)
                      .++|.|.+++.  +|.|+|.+..          +.  ..|.+   ...+..+.+.+|  +.++|.|.+.+ |.+.++|++
T Consensus        85 ~~~l~I~~~~~~d~G~Y~C~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~G~~~~v~L~C~~~~-p~~~v~w~~  163 (772)
T 3v2a_R           85 CKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSI-SNLNVSLCA  163 (772)
T ss_dssp             -----------------------------------------------CEEEEEEESSCCCEEEECCCCSC-SSCCEEEEE
T ss_pred             EEEEEECCCcHhhCEeEEEEEcCCCEEEEEEEEECCCCCCceEcCcccceeEEEecCCCCeEEEEccCCC-CCcEEEEEe
Confidence            45899999998  9999999865          11  12222   123455678889  99999999976 778999999


Q ss_pred             C--CccC-CCCC-eEEcccceEEEccCCCCCCeEEEEEEEeCCceE-EEEEEEEEEee-ccccccCCC-ceEEecCCcEE
Q psy15127        108 D--DGKM-PTGR-AKILDDRSLQIENVGPQDEGLYICDVENLVGSI-SLRASLTVHLL-RDDFRAEPK-DTRVASGETAL  180 (633)
Q Consensus       108 ~--~~~i-~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~-s~~~~l~V~~~-~p~~~~~~~-~~~~~~g~~~~  180 (633)
                      +  +..+ ..+. ........|.|.+++.+|+|.|+|.+.+..... +....+.+... .+.+.+.+. ...+.+|+.+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~  243 (772)
T 3v2a_R          164 RYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLV  243 (772)
T ss_dssp             ETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEEETTEEEECCEEEEEEECCCEEEEEEECCSCEEEETTCCEE
T ss_pred             cCCCccccCCCceeecCCCCCeEecCCChhhCeEEEEEEEECCceEEEEEEEEEEecCccceeeeCCCCceEEecCCcEE
Confidence            7  5544 3332 333445789999999999999999999765442 22244444432 233444443 46899999999


Q ss_pred             EEEeCCCC--CCCCeEEEEECCEEeccCCCeeE----------EeccceeeeEE----EeeeEEEEeecCCCCC------
Q psy15127        181 LECGPPKG--QPEPTLHWKKNGQFIDLESSKSL----------DLSRRTLGWLR----VRPLYWNVARPRANLN------  238 (633)
Q Consensus       181 l~C~~~~~--~p~~~i~W~~~~~~~~~~~~~~~----------~~~~~~~~~~~----~~g~y~C~a~~~~~~~------  238 (633)
                      |.|.+ .+  .+.+.+.|++++..+........          ......+.+..    ..|.|+|.+.|..+..      
T Consensus       244 L~C~~-~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l  322 (772)
T 3v2a_R          244 LNCTA-RTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFV  322 (772)
T ss_dssp             EEEEE-EECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEE
T ss_pred             EEEEE-ecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEE
Confidence            99995 44  55679999999887543221110          11111222211    1479999999876521      


Q ss_pred             -----Ccccccc-cceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeE
Q psy15127        239 -----PRYIGRK-MASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGF  312 (633)
Q Consensus       239 -----p~~~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  312 (633)
                           |.+.... ......+..|+.++|.|.+.|.|.+.+.|+++|..+..       +........|.|.++..+|+|.
T Consensus       323 ~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~-------~~~~~~~~~L~i~~v~~~d~G~  395 (772)
T 3v2a_R          323 RVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLES-------NHTIKAGHVLTIMEVSERDTGN  395 (772)
T ss_dssp             EEECCCC-------------------------------------------------------------------------
T ss_pred             EEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCC-------CceEccceeEEEecCChhcCce
Confidence                 2111111 12234567889999999999999999999999987742       2222245789999999999999


Q ss_pred             EEEEEEeCCceeE--EEEEEEEEecccC---------------------------CCce-EEeCCCcc------------
Q psy15127        313 FVCSALSVAGSTT--VRAFLQVREFCVL---------------------------PKGT-FTLGQPNL------------  350 (633)
Q Consensus       313 Y~C~a~n~~g~~~--~~~~l~v~~~~~~---------------------------p~p~-~~~~~~~~------------  350 (633)
                      |+|.|.|..|...  ..+.|.|...+.+                           |.|. +.|.....            
T Consensus       396 Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~  475 (772)
T 3v2a_R          396 YTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVS  475 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCcEEEEeEeccCCCCcEEEEEEcCCcccccccccccc
Confidence            9999999988653  3445555433222                           2222 44432100            


Q ss_pred             ----------------ccCCCC-----------------CceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCC
Q psy15127        351 ----------------ATGNSD-----------------LRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGP  397 (633)
Q Consensus       351 ----------------~~g~p~-----------------~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~  397 (633)
                                      ..|+..                 ..+.+..+  +|+|.|+|.|.|..|..+..+.|.|..+|..
T Consensus       476 ~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i  553 (772)
T 3v2a_R          476 VTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCEAVNKVGRGERVISFHVTRGPEI  553 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEEEEEccccccceeEEEEEECCcee
Confidence                            001100                 11233333  6899999999999999888888888865543


Q ss_pred             CceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEE-EEecCCCCeEEEEE---e--eeeceE
Q psy15127        398 HAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY-FSSDLQTGWVVAAH---R--ITSTSI  471 (633)
Q Consensus       398 ~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~-~~~~~~~~~~~~~~---~--~~~~~~  471 (633)
                      ..   .+......+....+.+.........+.|.......   .......+.. ........|.....   .  .....+
T Consensus       554 ~~---~p~~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  627 (772)
T 3v2a_R          554 TL---QPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQP---LPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIM  627 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ec---cCCcccccCCceEEEEeccCCCCCCcEEEEcCCcc---cccccCcccccccccccceeeccceeeecCCCceEEE
Confidence            11   11111112222222232222334456665432110   0000000000 00000000100000   0  012348


Q ss_pred             EEecCCCCCeEEEEEEEEeccccC
Q psy15127        472 TVSDLKPDTSYMFIVRAENSHGLG  495 (633)
Q Consensus       472 ~i~~L~p~~~Y~~~v~a~n~~G~g  495 (633)
                      .|.++...+.+.|+|.|.|..|..
T Consensus       628 ~i~~~~~~d~G~Y~C~a~n~~~~~  651 (772)
T 3v2a_R          628 ELKNASLQDQGDYVCLAQDRKTKK  651 (772)
T ss_dssp             ------------------------
T ss_pred             EECCCCccCCcEEEEEEEeCCCCe
Confidence            899999999999999999976554

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.96  E-value=2.8e-29  Score=249.52  Aligned_cols=258  Identities=17%  Similarity=0.227  Sum_probs=189.0

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEecc-CCCeEEEEeCCccCCCCCeEEc--ccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGD-PLPTILWRRDDGKMPTGRAKIL--DDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~-p~p~i~W~~~~~~i~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      ..+|.|.. +.+..+.+|+.++|.|.+.+. |.+.++|+|++..+..+.....  ....|.|.+++.+|+|.|+|.+.|.
T Consensus         5 ~~~P~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~   83 (317)
T 2y25_A            5 FTGPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDD   83 (317)
T ss_dssp             SSCCEEEE-EEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESS
T ss_pred             cCCCcEee-eeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECC
Confidence            35677774 446889999999999999887 7889999999998875433222  2368999999999999999999999


Q ss_pred             CceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCC----------CCCCeEEEEECCEEeccCCCeeEEecc
Q psy15127        146 VGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKG----------QPEPTLHWKKNGQFIDLESSKSLDLSR  215 (633)
Q Consensus       146 ~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~----------~p~~~i~W~~~~~~~~~~~~~~~~~~~  215 (633)
                      .|..+..+.|.|..+ |.+...+....+..|+.+.|.|. ..+          .|.+.+.|++++..+............
T Consensus        84 ~g~~~~~~~l~v~~~-~~~~~~~~~~~~~~g~~~~l~c~-~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~  161 (317)
T 2y25_A           84 RGKDKSRLKLVDEAF-KELMMEVCKKIALSATDLKIQST-AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTG  161 (317)
T ss_dssp             SCEEEEEECCSTHHH-HHHHHHHHHHHHTCBCCCEEEEC-SSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECS
T ss_pred             CCcEEEEEEEEEecC-ccccccCCceecccCCCeEEEee-ccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccC
Confidence            998877777776655 44333333444556777777776 344          789999999999888755443333222


Q ss_pred             ce--eeeEEE----eeeEEEEeecCCCCCCc------------------------------ccccccceeEEecCCceEE
Q psy15127        216 RT--LGWLRV----RPLYWNVARPRANLNPR------------------------------YIGRKMASLLIWNHPRVNR  259 (633)
Q Consensus       216 ~~--~~~~~~----~g~y~C~a~~~~~~~p~------------------------------~~~~~~~~~~~~~~g~~~~  259 (633)
                      ..  +.+..+    .|.|+|.+.|..+....                              ...........+..|+.+.
T Consensus       162 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~  241 (317)
T 2y25_A          162 EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALN  241 (317)
T ss_dssp             SEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBC
T ss_pred             CEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEE
Confidence            22  333222    48999999997652210                              0011122345677899999


Q ss_pred             EEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccC-c---eEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEe
Q psy15127        260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE-G---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE  334 (633)
Q Consensus       260 l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~-~---~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  334 (633)
                      |.|.+.|+|.+.+.|+++|..+..     ..+..+... +   .|.|.++..+|+|.|+|.|.|..|..+..+.|.|..
T Consensus       242 l~C~~~g~p~p~i~W~~~g~~~~~-----~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  315 (317)
T 2y25_A          242 LTCNVWGDPPPEVSWLKNEKALAS-----DDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI  315 (317)
T ss_dssp             EEEEEECSSCCEEEEEESSSEECC-----CSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEecCCCCEEEEEECCEeCCC-----CCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence            999999999999999999988742     123333322 3   899999999999999999999999999999998873

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.96  E-value=7.9e-29  Score=251.24  Aligned_cols=297  Identities=16%  Similarity=0.139  Sum_probs=204.8

Q ss_pred             ceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCC---------------CCCeEEc------ccceEEEccCCCCCCeEE
Q psy15127         80 DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP---------------TGRAKIL------DDRSLQIENVGPQDEGLY  138 (633)
Q Consensus        80 ~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~---------------~~~~~~~------~~~~L~i~~v~~~d~G~Y  138 (633)
                      .+.+.+|+.++|.|.+.+.|.+.+.|+|++..+.               ..+....      .+..|.|.+++.+|+|.|
T Consensus         3 ~v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   82 (363)
T 1wio_A            3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (363)
T ss_dssp             EEEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEE
T ss_pred             eEEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEE
Confidence            3578999999999999989999999999986421               1222222      245799999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEecccee
Q psy15127        139 ICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL  218 (633)
Q Consensus       139 ~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~  218 (633)
                      +|.|.|..    ..+.|.|...    ...|. ..+.+|+.+.|.|. ..+.|.+.+.|++++..+.. ....+.+.+...
T Consensus        83 ~C~~~n~~----~~~~l~V~~~----~~~~~-~~v~~G~~v~l~C~-~~~~p~~~v~W~~~~~~~~~-~~~~L~i~~v~~  151 (363)
T 1wio_A           83 ICEVEDQK----EEVQLLVFGL----TANSD-THLLQGQSLTLTLE-SPPGSSPSVQCRSPRGKNIQ-GGKTLSVSQLEL  151 (363)
T ss_dssp             EEEETTEE----EEEEEEEEEE----EESSC-SSEESBSCEEEEEE-CCTTCCCCEEEECSSSCEEE-ESSEEEECSBCG
T ss_pred             EEEEEECC----CcEEEEEEeC----CCCCc-eEEecCCCEEEEEE-cCCCCCCeEEEEcCCCcccc-cceEEEEeeCCh
Confidence            99998763    3566666653    12222 36789999999999 56789999999999765432 112233332222


Q ss_pred             eeEEEeeeEEEEeecCCCCC---Cccc---ccccceeEEecCCceEEEEEEEee-----ecCCeeEEEECCEEEEeccC-
Q psy15127        219 GWLRVRPLYWNVARPRANLN---PRYI---GRKMASLLIWNHPRVNRLSCFAEG-----SPLPSVFWTQEGSQVLMFPG-  286 (633)
Q Consensus       219 ~~~~~~g~y~C~a~~~~~~~---p~~~---~~~~~~~~~~~~g~~~~l~C~~~g-----~p~~~v~W~~~g~~~~~~~~-  286 (633)
                      .   ..|.|+|.|.+..+..   ..+.   .........+.+|+.+.|.|.+.+     .|.+.+.|+++|..+..... 
T Consensus       152 ~---d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~  228 (363)
T 1wio_A          152 Q---DSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWIT  228 (363)
T ss_dssp             G---GCEECEEEEEETTEEEEECCEECEECCSCSEEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEE
T ss_pred             h---cCCEEEEEEecCCCeEEEEEEEEEecCCCCCCceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEE
Confidence            2   2589999998764421   0111   111224556778999999998887     78899999999976532000 


Q ss_pred             --CccceEEEc-----------c--CceEEEcCCCCCCCeEEEEEEEeC--CceeEEEEEEEEEecc-----------cC
Q psy15127        287 --NAYGHLHVT-----------Q--EGTLRIQGVQKEDAGFFVCSALSV--AGSTTVRAFLQVREFC-----------VL  338 (633)
Q Consensus       287 --~~~~~~~~~-----------~--~~~l~i~~~~~~d~G~Y~C~a~n~--~g~~~~~~~l~v~~~~-----------~~  338 (633)
                        ....++...           .  ...|.|.++..+|+|.|+|.|.|.  .|..+..+.|.|..+.           ..
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v~g~~~~l~C~~~g~  308 (363)
T 1wio_A          229 FDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGP  308 (363)
T ss_dssp             EEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEEECCCSSSEEEEEESS
T ss_pred             EEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEEecCCCeeEEEEEccc
Confidence              001222221           2  348999999999999999999999  9998888888887432           33


Q ss_pred             CCce--EEeCCCccccCCCCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEee
Q psy15127        339 PKGT--FTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVE  392 (633)
Q Consensus       339 p~p~--~~~~~~~~~~g~p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~  392 (633)
                      |+|.  +.|........ ....+.|..+..+|+|.|+|.|.|. |....+..|.|.
T Consensus       309 p~p~~~i~W~~~~~~~~-~~~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V~  362 (363)
T 1wio_A          309 TSPKLMLSLKLENKEAK-VSKREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKVL  362 (363)
T ss_dssp             CCTTCCEEEECSSSSCS-EEESSSEEEESSCCSEEEEEEECSS-SSCCEEEEEEEC
T ss_pred             cCCCccEEEEeCCCcee-eeeeeeeeeeccccceeEEEEEecC-CeEEEecceEec
Confidence            4555  66655443221 1234578899999999999999964 455556666653

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.96  E-value=1.3e-27  Score=235.46  Aligned_cols=266  Identities=16%  Similarity=0.174  Sum_probs=183.6

Q ss_pred             EEecCCceEEEEEEEeee-------cCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127        250 LIWNHPRVNRLSCFAEGS-------PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG  322 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~-------p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  322 (633)
                      .++..|++++|.|.+.+.       |.+.+.|.++|..+..   .. .+......+.|.|.++...| |.|+|.|.+. |
T Consensus        14 ~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~---~~-~~~~~~~~~~L~i~~~~~~~-g~Y~C~a~~~-g   87 (303)
T 1i1r_A           14 PVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPK---EQ-YTIINRTASSVTFTDIASLN-IQLTCNILTF-G   87 (303)
T ss_dssp             CEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCG---GG-CEEEETTEEEEEECSCCCSE-EEEEEEEEET-T
T ss_pred             ceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECCh---hh-eeeeCCcEEEEEEcCcCCCc-eEEEEecccC-C
Confidence            457789999999999864       7789999999987631   11 11111123479999998874 8999998774 3


Q ss_pred             eeEEEEEEEEEecccCCCceEEeCCCccccCCCCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceec
Q psy15127        323 STTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHR  402 (633)
Q Consensus       323 ~~~~~~~l~v~~~~~~p~p~~~~~~~~~~~g~p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~  402 (633)
                      ......                                                        ..+.|.+..+        
T Consensus        88 ~~~~~~--------------------------------------------------------~~~~l~v~~~--------  103 (303)
T 1i1r_A           88 QLEQNV--------------------------------------------------------YGITIISGLP--------  103 (303)
T ss_dssp             TEEEEE--------------------------------------------------------EEEEEEEECC--------
T ss_pred             CcceEE--------------------------------------------------------EEEEEeccCC--------
Confidence            222111                                                        0122333333        


Q ss_pred             CCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecC-CCCCe
Q psy15127        403 MPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDL-KPDTS  481 (633)
Q Consensus       403 ~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L-~p~~~  481 (633)
                             |++|..+.+.....+++.++|.++...   + .+.+|.|+|+..+. ..|...........++|.+| .|++.
T Consensus       104 -------P~~P~~l~~~~~~~~~v~l~W~~~~~~---~-~~~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~L~~p~t~  171 (303)
T 1i1r_A          104 -------PEKPKNLSCIVNEGKKMRCEWDGGRET---H-LETNFTLKSEWATH-KFADCKAKRDTPTSCTVDYSTVYFVN  171 (303)
T ss_dssp             -------CCCCEEEEEEEETTSCCEEEEECCSCC---S-SCCEEEEEEEETTE-ECCCEECCSSCTTEEECSSCCCTTSC
T ss_pred             -------CCCCeeeEEEECCCCcEEEEccCCCCC---C-CCcCEEEEEEecCC-CCccCCCcCCCceEEEECCcCccccc
Confidence                   345777777777778999999999854   2 35799999986542 22222222334578999999 99999


Q ss_pred             EEEEEEEEeccccCCCCCCCCceeecC-CCCCCCcchHHHHHHHhCCceEEeeeeeec--ccceEEEEEEEecCCCcccc
Q psy15127        482 YMFIVRAENSHGLGIPSPVSPITRTLG-LNSLVPQHLLDEARARLGTKVVNLRELIPT--ASTAVRITWEVSWGSVPQHL  558 (633)
Q Consensus       482 Y~~~v~a~n~~G~g~~s~~~~~~~t~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~si~v~W~~p~~~~p~~~  558 (633)
                      |.|+|.|.|..|.+..+...  +.+.. .+|.+|..+                .+..+  +.+++.|+|++|        
T Consensus       172 Y~f~V~A~N~~G~~~s~~~~--~~~~~~~~p~pP~~~----------------~v~~~~~~~~sv~l~W~~p--------  225 (303)
T 1i1r_A          172 IEVWVEAENALGKVTSDHIN--FDPVYKVKPNPPHNL----------------SVINSEELSSILKLTWTNP--------  225 (303)
T ss_dssp             EEEEEEEEETTEEEECCCEE--ECGGGGEECCCCEEE----------------EEECCSSSSSCEEEEEECC--------
T ss_pred             EEEEEEEEcCCCCcccCCEE--ECHHHeEecCCCcce----------------EEEEecCCCCEEEEEECCC--------
Confidence            99999999999998643221  22222 234444433                45443  679999999965        


Q ss_pred             cchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        559 LDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       559 ~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      ...++.+++| .|+|+..+...       |.......  .....++++|.+|+|++.|.|+|+|.|.+|.|++|+
T Consensus       226 ~~~~~~i~~Y-~v~y~~~~~~~-------w~~~~~~~--~~~~~~~~~l~~L~p~t~Y~~rV~A~n~~G~G~~S~  290 (303)
T 1i1r_A          226 SIKSVIILKY-NIQYRTKDAST-------WSQIPPED--TASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSD  290 (303)
T ss_dssp             GGGGTSCEEE-EEEEEETTCSS-------CEECCGGG--GCSCCSEEEECSCCTTCEEEEEEEEEETTSCSCCCC
T ss_pred             CCCCcccEEE-EEEEEeCCCCC-------ceEEcccc--CCCceeEEEeCCCCCCCEEEEEEEeccCCCCCCcCC
Confidence            3457889999 99999886433       75432110  134578899999999999999999999999999985

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.95  E-value=9.6e-28  Score=237.93  Aligned_cols=252  Identities=18%  Similarity=0.236  Sum_probs=181.9

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCC-----eEEEEeCCccCC--------------CCCeEEc--------ccceEE
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLP-----TILWRRDDGKMP--------------TGRAKIL--------DDRSLQ  126 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p-----~i~W~~~~~~i~--------------~~~~~~~--------~~~~L~  126 (633)
                      ++..|..+.+..|++++|.|.+.+.+.+     .|+|+|++....              ..+....        .+.+|.
T Consensus         3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~   82 (313)
T 4fqp_A            3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR   82 (313)
T ss_dssp             EEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred             EEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence            5677888889999999999999876655     489999886431              1122221        235799


Q ss_pred             EccCCCCCCeEEEEEEEe-CCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEecc
Q psy15127        127 IENVGPQDEGLYICDVEN-LVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDL  205 (633)
Q Consensus       127 i~~v~~~d~G~Y~C~~~n-~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~  205 (633)
                      |.+++.+|+|.|+|.+.+ ..+..+..+.|.|... |.+...+....+..|+.+.+.|.+..+.|.+.+.|++++..+..
T Consensus        83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~-P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~  161 (313)
T 4fqp_A           83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK-PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPN  161 (313)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBC-CEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEE
T ss_pred             ECcCChhhCEEEEEEEeeccCcceeeeeeeeeccC-CcceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccc
Confidence            999999999999999864 4566778888888777 66666666667778899999998667899999999999876643


Q ss_pred             CCCeeEEecccee---eeEE-------EeeeEEEEeecCCCCCCccc-----cc-------ccceeEEecCCceEEEEEE
Q psy15127        206 ESSKSLDLSRRTL---GWLR-------VRPLYWNVARPRANLNPRYI-----GR-------KMASLLIWNHPRVNRLSCF  263 (633)
Q Consensus       206 ~~~~~~~~~~~~~---~~~~-------~~g~y~C~a~~~~~~~p~~~-----~~-------~~~~~~~~~~g~~~~l~C~  263 (633)
                      ..... .......   ..+.       ..|.|+|.|.|..+......     ..       ..........|+.++|.|.
T Consensus       162 ~~~~~-~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~  240 (313)
T 4fqp_A          162 TSQVP-GFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCD  240 (313)
T ss_dssp             EEEEE-CSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEE
T ss_pred             cceee-eecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEE
Confidence            21111 1111111   1111       13689999999765432110     00       0111223456789999999


Q ss_pred             EeeecCC-eeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEec
Q psy15127        264 AEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREF  335 (633)
Q Consensus       264 ~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  335 (633)
                      +.|+|.| .+.|+++|..+..        .....+++|.|.++..+|+|.|+|.|.|..|..+.++.|.|.+.
T Consensus       241 ~~g~P~p~~v~W~~~~~~l~~--------~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  305 (313)
T 4fqp_A          241 ARSNPEPTGYNWSTTMGPLPP--------FAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEG  305 (313)
T ss_dssp             EEEESCCCEEEEEETTBSCCT--------TEEEETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred             ecCCCCCcEEEEEECCEECCC--------ceEEeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeC
Confidence            9999999 6999999986631        12234568999999999999999999999999999999999863

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.95  E-value=2.8e-27  Score=231.88  Aligned_cols=252  Identities=15%  Similarity=0.163  Sum_probs=182.4

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      ..+|.|...+....+.+|+.++|.|.+.+    .++|+|++..+   ......++.|.|.+++.+|+|.|+|.|.|  |.
T Consensus        10 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~---~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n--g~   80 (290)
T 2o26_X           10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFN---EMVENKKNEWIQEKAEATRTGTYTCSNSN--GL   80 (290)
T ss_dssp             --CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSS---CEEEECSSEEEETTCCGGGCEEEEEEESS--SC
T ss_pred             CCCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCcce---eeecCCCceEEEeccCHHhCeEEEEEeeC--Cc
Confidence            35688888888899999999999999987    89999999877   22223347999999999999999999999  44


Q ss_pred             EEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCC-CeEEEE-ECCEEeccCCCeeEEeccceeeeEEE---
Q psy15127        149 ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPE-PTLHWK-KNGQFIDLESSKSLDLSRRTLGWLRV---  223 (633)
Q Consensus       149 ~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~i~W~-~~~~~~~~~~~~~~~~~~~~~~~~~~---  223 (633)
                       +..+.|.|..+ |.+...+....+.+|+.+.|.|.+ .+ |. +.+.|+ ++|..+.... .........+.+..+   
T Consensus        81 -~~~~~l~V~~~-~~~~~~~~~~~~~~g~~v~l~C~~-~~-p~~~~v~W~~~~g~~l~~~~-~~~~~~~~~L~i~~v~~~  155 (290)
T 2o26_X           81 -TSSIYVFVRDP-AKLFLVGLPLFGKEDSDALVRCPL-TD-PQVSQYSLIECDGKSLPTDL-TFVPNPKAGITIKNVKRA  155 (290)
T ss_dssp             -EEEEEEEEECS-SCCBCCCCCEEEETTSCEEECCCB-SC-CSCEEEEEEETTSCCCCTTC-EEEEETTTEEEEESCCGG
T ss_pred             -cEEEEEEEeCC-CcccccccceEEecCCeEEEeCcC-CC-CCCceEEEEeCCCcCCCCCC-ceeeCCCCCEEEecccHH
Confidence             77888999887 555566777888999999999995 45 77 899995 6777665432 222222334444333   


Q ss_pred             -ee-eEEEEeecCCCCCC--cccc------------cccceeEEecCCceEEEEEEEeeecCCe-eEEEECCEEE----E
Q psy15127        224 -RP-LYWNVARPRANLNP--RYIG------------RKMASLLIWNHPRVNRLSCFAEGSPLPS-VFWTQEGSQV----L  282 (633)
Q Consensus       224 -~g-~y~C~a~~~~~~~p--~~~~------------~~~~~~~~~~~g~~~~l~C~~~g~p~~~-v~W~~~g~~~----~  282 (633)
                       .| .|+|.|.|..+...  .+..            ........+..|+.++|.|.+.|.|.+. +.|+++|..+    .
T Consensus       156 d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~  235 (290)
T 2o26_X          156 YHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQ  235 (290)
T ss_dssp             GTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCC
T ss_pred             HCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCcccee
Confidence             48 99999998754310  0100            0111123566889999999999999996 9999999763    1


Q ss_pred             eccCCcc-ceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEe
Q psy15127        283 MFPGNAY-GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE  334 (633)
Q Consensus       283 ~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  334 (633)
                      ....... .+......+.|.|.++..+|+|.|+|.|.|..|..+..+.|.|.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  288 (290)
T 2o26_X          236 VKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVE  288 (290)
T ss_dssp             EECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred             ecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEe
Confidence            1110000 000223456899999999999999999999999999988888864

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.95  E-value=1.8e-28  Score=245.66  Aligned_cols=254  Identities=21%  Similarity=0.274  Sum_probs=114.5

Q ss_pred             eCCCceEEEcCCeEEEEEEEecc-CCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEE
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGD-PLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRAS  154 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~-p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~  154 (633)
                      ..+....+.+|+.++|.|.+.+. |.+.+.|+|+|..+..+.+....++.|.|.+++.+|+|.|+|.+.|. |..+..+.
T Consensus        13 ~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~~   91 (334)
T 1ry7_B           13 GQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLT-QRVLCHFS   91 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEeccceEEEeecccccCEEEEEEEEeC-CeEEEEEE
Confidence            34788889999999999999876 67899999999988765545556789999999999999999999998 77777888


Q ss_pred             EEEEeec---------------------cccccC----CCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCe
Q psy15127        155 LTVHLLR---------------------DDFRAE----PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK  209 (633)
Q Consensus       155 l~V~~~~---------------------p~~~~~----~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~  209 (633)
                      |.|...+                     |.+..+    +....+.+|+.+.|.|. ..|.|.+.+.|++++..+......
T Consensus        92 l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~-~~g~p~~~v~W~~~~~~~~~~~~~  170 (334)
T 1ry7_B           92 VRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCP-AAGNPTPSISWLKNGREFRGEHRI  170 (334)
T ss_dssp             ---------------------------CCCCSCCTTCCCCEEEEETTCCEEEECC-CCCSSCCEEECCBTTBCCCTTSST
T ss_pred             EEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEE-ccCCCCCeEEEEECCEECcccccc
Confidence            8887541                     222221    22357889999999999 678899999999999877644321


Q ss_pred             ---eEEeccceeeeEE----EeeeEEEEeecCCCCC--------------CcccccccceeEEecCCceEEEEEEEeeec
Q psy15127        210 ---SLDLSRRTLGWLR----VRPLYWNVARPRANLN--------------PRYIGRKMASLLIWNHPRVNRLSCFAEGSP  268 (633)
Q Consensus       210 ---~~~~~~~~~~~~~----~~g~y~C~a~~~~~~~--------------p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p  268 (633)
                         ........+.+..    ..|.|+|.+.|..+..              +............+..|+.+.|.|.+.|.|
T Consensus       171 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p  250 (334)
T 1ry7_B          171 GGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDA  250 (334)
T ss_dssp             TCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSS
T ss_pred             cceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCC
Confidence               1111122232222    2489999999876521              011111122345677899999999999999


Q ss_pred             CCeeEEEE----CCEEEEeccCCccceEEEc----------cCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEe
Q psy15127        269 LPSVFWTQ----EGSQVLMFPGNAYGHLHVT----------QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE  334 (633)
Q Consensus       269 ~~~v~W~~----~g~~~~~~~~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  334 (633)
                      .+.+.|++    +|..+....   .......          ....|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus       251 ~p~v~W~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  327 (334)
T 1ry7_B          251 QPHIQWLKHVEVNGSKVGPDG---TPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLP  327 (334)
T ss_dssp             CEEEEEEECCCGGGCSBCTTS---SBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEEC
T ss_pred             CCeEEEEECCcCCCccccCCC---CeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEE
Confidence            99999999    665543111   0011111          123799999999999999999999999999999999985

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.95  E-value=8.5e-28  Score=238.63  Aligned_cols=256  Identities=17%  Similarity=0.158  Sum_probs=186.5

Q ss_pred             CCCceEEEcCCeEEEEEEEeccC-CCeEEEEeCCccCC----CCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEE
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGDP-LPTILWRRDDGKMP----TGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISL  151 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~p-~p~i~W~~~~~~i~----~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~  151 (633)
                      ....+.+.+|+.+.|.|.+.+.+ .+.|.|+|++..+.    ...+....++.|.|.+++.+|+|.|+|.|.|..|....
T Consensus        11 ~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~   90 (315)
T 1itb_B           11 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRI   90 (315)
T ss_dssp             CCCCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCCCCE
T ss_pred             CceEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceEEEE
Confidence            34577899999999999998877 78999999987542    22233334569999999999999999999999888777


Q ss_pred             EEEEEEEeeccccccCCC---ceEEecCCcEEEEEeCC-----CCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEE
Q psy15127        152 RASLTVHLLRDDFRAEPK---DTRVASGETALLECGPP-----KGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV  223 (633)
Q Consensus       152 ~~~l~V~~~~p~~~~~~~---~~~~~~g~~~~l~C~~~-----~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (633)
                      .+.+.+...+|.+...+.   ...+..|+.+.|.|.+.     .|.|.+.+.|++++..+...... .......+.+..+
T Consensus        91 ~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~-~~~~~~~L~i~~v  169 (315)
T 1itb_B           91 KISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIH-FSGVKDRLIVMNV  169 (315)
T ss_dssp             ECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSS-EEEETTEEEESSC
T ss_pred             EEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccce-EeecCceEEEEec
Confidence            777776665465544433   35678999999999952     88999999999999998654332 2223334433322


Q ss_pred             ----eeeEEEEee-cCCCCC------------------CcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEE
Q psy15127        224 ----RPLYWNVAR-PRANLN------------------PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQ  280 (633)
Q Consensus       224 ----~g~y~C~a~-~~~~~~------------------p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~  280 (633)
                          .|.|+|.|. +..+..                  +............+..|+.+.|.|.+.|.|.|.+.|+++|..
T Consensus       170 ~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~  249 (315)
T 1itb_B          170 AEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSV  249 (315)
T ss_dssp             CGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEE
T ss_pred             eehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEE
Confidence                489999999 555422                  111111111224677899999999999999999999999998


Q ss_pred             EEeccCCcc-ceEEEc---------cCceEEEcCCCCCC-CeEEEEEEEeCCceeEEEEEEEEE
Q psy15127        281 VLMFPGNAY-GHLHVT---------QEGTLRIQGVQKED-AGFFVCSALSVAGSTTVRAFLQVR  333 (633)
Q Consensus       281 ~~~~~~~~~-~~~~~~---------~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~~~~~l~v~  333 (633)
                      +........ ......         ..+.|.|.++..+| +|.|+|.|.|..|....++.|.|.
T Consensus       250 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~  313 (315)
T 1itb_B          250 IDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP  313 (315)
T ss_dssp             CCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred             CCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence            753211110 111111         12379999999999 999999999999999999888774

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.95  E-value=1.7e-26  Score=228.91  Aligned_cols=249  Identities=14%  Similarity=0.128  Sum_probs=179.6

Q ss_pred             CCceEEEcCCeEEEEEEEe-ccCCCeEEEEeCCccCCCC-CeEEccc---ceEEEccCCCCCCeEEEEEEEeCCceEEEE
Q psy15127         78 PSDATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKMPTG-RAKILDD---RSLQIENVGPQDEGLYICDVENLVGSISLR  152 (633)
Q Consensus        78 ~~~~~~~~G~~~~L~C~~~-~~p~p~i~W~~~~~~i~~~-~~~~~~~---~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~  152 (633)
                      +..+.+.+|+.+.|.|... +.|.+.++|+|++..+..+ +.....+   ..|.|.+++.+|+|.|+|.+.|..|... .
T Consensus         8 ~~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s   86 (312)
T 2y23_A            8 EVVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-S   86 (312)
T ss_dssp             CCEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-E
T ss_pred             ceeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-E
Confidence            3456788999999999885 5788999999999998754 4443332   5899999999999999999999887544 5


Q ss_pred             EEEEEEee-----------ccccccCCC-ceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEec--cce-
Q psy15127        153 ASLTVHLL-----------RDDFRAEPK-DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLS--RRT-  217 (633)
Q Consensus       153 ~~l~V~~~-----------~p~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~--~~~-  217 (633)
                      +.|.|...           +|.+...+. ...+.+|+.+.|.|.+..+.|.+.+.|++++..+.......+...  ... 
T Consensus        87 ~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~  166 (312)
T 2y23_A           87 YLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGII  166 (312)
T ss_dssp             EEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEE
T ss_pred             EEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEE
Confidence            55665430           244444333 678889999999999655899999999999999876544333221  111 


Q ss_pred             -eeeEE----EeeeEEEEeecCCCCCCc----------------------ccccccc-----eeEEecCCceEEEEEEEe
Q psy15127        218 -LGWLR----VRPLYWNVARPRANLNPR----------------------YIGRKMA-----SLLIWNHPRVNRLSCFAE  265 (633)
Q Consensus       218 -~~~~~----~~g~y~C~a~~~~~~~p~----------------------~~~~~~~-----~~~~~~~g~~~~l~C~~~  265 (633)
                       +.+..    ..|.|+|.+.+.......                      ......+     ....+..|+.+.|.|.+.
T Consensus       167 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~l~C~~~  246 (312)
T 2y23_A          167 EMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVA  246 (312)
T ss_dssp             EEEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             EEEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEEEEEEEc
Confidence             22222    248999988764322100                      0000001     124677899999999999


Q ss_pred             eecCC-eeEEEECCEEEEeccCCccceEEE-ccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127        266 GSPLP-SVFWTQEGSQVLMFPGNAYGHLHV-TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       266 g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      |.|++ .+.|+++|..+....     +... .....|.|.++..+|+|.|+|.|.|..|..+.++.|.+
T Consensus       247 ~~p~~~~v~W~~~g~~~~~~~-----~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i  310 (312)
T 2y23_A          247 NIKKETHIVWYKDEREISVDE-----KHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  310 (312)
T ss_dssp             SCCSSCEEEEEETTEEEEEEC-----CC----CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECS
T ss_pred             CCCCCCEEEEeeCCEECCCCC-----cEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEe
Confidence            99998 999999999886321     2222 22358999999999999999999999999999888765

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.95  E-value=1.6e-26  Score=222.85  Aligned_cols=231  Identities=16%  Similarity=0.189  Sum_probs=174.2

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCC-eEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSI  149 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p-~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~  149 (633)
                      +|.|...|....+.+|+.+.|.|.+.+.|.+ .++|+|+|..+...      +..|.|.+++.+|+|.|+|.+.|..+. 
T Consensus         1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~~~~s-   73 (262)
T 3rjd_A            1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS------TPSYRITSASVNDSGEYRCQRGLSGRS-   73 (262)
T ss_dssp             CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC------SSEEEESSCCGGGCEEEEEEESSSCCC-
T ss_pred             CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc------CCeEEEecCCcccCeEEEEEEecCCcc-
Confidence            5889999999999999999999999988887 89999999988653      468999999999999999999876554 


Q ss_pred             EEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCC-CeeEEeccceeeeEEEeeeEE
Q psy15127        150 SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES-SKSLDLSRRTLGWLRVRPLYW  228 (633)
Q Consensus       150 s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~y~  228 (633)
                       ..+.|.|..+ + +...+....+.+|+.+.|.|.+..+.|.+.+.|++++..+.... ...+.+......   ..|.|+
T Consensus        74 -~~~~l~v~~~-~-~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~~~~~l~i~~~~~~---d~G~Y~  147 (262)
T 3rjd_A           74 -DPIQLEIHRG-W-LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNIS---HNGTYH  147 (262)
T ss_dssp             -CCEEEEEECS-S-EEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEEECCCEEESSCCGG---GCEEEE
T ss_pred             -ccEEEEEecc-c-eEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccCCCCeEEEEECChh---hCEEEE
Confidence             4566777654 3 34455566788999999999965788899999999999886432 222222222222   258999


Q ss_pred             EEeecCCCCCC---ccccc--------ccceeEEecCCceEEEEEEEeeecC-C----eeEEEECCEEEEeccCCccceE
Q psy15127        229 NVARPRANLNP---RYIGR--------KMASLLIWNHPRVNRLSCFAEGSPL-P----SVFWTQEGSQVLMFPGNAYGHL  292 (633)
Q Consensus       229 C~a~~~~~~~p---~~~~~--------~~~~~~~~~~g~~~~l~C~~~g~p~-~----~v~W~~~g~~~~~~~~~~~~~~  292 (633)
                      |.+.|..+...   .+...        .......+..|+.+.|.|.+.+.|. +    .+.|++++..+..         
T Consensus       148 C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~---------  218 (262)
T 3rjd_A          148 CSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRG---------  218 (262)
T ss_dssp             EEEESSSEEEEECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEE---------
T ss_pred             EEEeCCCCccccceEEEeccCCCCCeEeecCceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEecc---------
Confidence            99988764210   00000        0001223567899999999999986 4    3789999987741         


Q ss_pred             EEccCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127        293 HVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       293 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                       ......|.|.++..+|+|.|+|.|.|..|..
T Consensus       219 -~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~  249 (262)
T 3rjd_A          219 -RNTSSEYQILTARREDSGLYWCEAATEDGNV  249 (262)
T ss_dssp             -EESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred             -cCCCceEEEEEechhhCeEEEEEEEcccCce
Confidence             2245689999999999999999999999975

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.95  E-value=4.3e-27  Score=245.12  Aligned_cols=316  Identities=16%  Similarity=0.170  Sum_probs=198.7

Q ss_pred             eeeeCCCceEEEcCCeEEEEEEEeccCC----CeEEEEeCC--ccC-------------CCCCeEEcc---cceEEEccC
Q psy15127         73 FPISEPSDATVLSGSVVEFVCRVGGDPL----PTILWRRDD--GKM-------------PTGRAKILD---DRSLQIENV  130 (633)
Q Consensus        73 ~~~~~~~~~~~~~G~~~~L~C~~~~~p~----p~i~W~~~~--~~i-------------~~~~~~~~~---~~~L~i~~v  130 (633)
                      .+...|..+.+.+|++++|.|.+.+.+.    +.+.|+|++  ..+             ..+++....   ...|.|.++
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   82 (438)
T 1qgc_4            3 VLTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPV   82 (438)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSC
T ss_pred             ceEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCC
Confidence            3566688899999999999999988776    389999963  222             123333322   347999999


Q ss_pred             CCCCCeEEEEEEEeCCce-EEEEEEEEEEee--ccccccCCCceEEecCCcEEEEEeCCCCCCCC-eEEEEECCEEeccC
Q psy15127        131 GPQDEGLYICDVENLVGS-ISLRASLTVHLL--RDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFIDLE  206 (633)
Q Consensus       131 ~~~d~G~Y~C~~~n~~g~-~s~~~~l~V~~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~~~~~~~~  206 (633)
                      +.+|+|.|+|.|.|..+. ....+.|.|...  +|.+...+......+|+.+.|.|.+..+.|.+ .|.|+++|..+...
T Consensus        83 ~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~  162 (438)
T 1qgc_4           83 EADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNG  162 (438)
T ss_dssp             CGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTT
T ss_pred             cCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCC
Confidence            999999999999998764 244556666542  25544433333344688999999954447777 99999999988654


Q ss_pred             CCeeEEe---c------cceeeeEEE----eeeEEEEeecCCCCCCccc---------ccccceeEEecCCceEEEEEEE
Q psy15127        207 SSKSLDL---S------RRTLGWLRV----RPLYWNVARPRANLNPRYI---------GRKMASLLIWNHPRVNRLSCFA  264 (633)
Q Consensus       207 ~~~~~~~---~------~~~~~~~~~----~g~y~C~a~~~~~~~p~~~---------~~~~~~~~~~~~g~~~~l~C~~  264 (633)
                      .......   .      ...+.+..+    .|.|+|.|.|..+..+...         .........+.+|+.++|.|.+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~  242 (438)
T 1qgc_4          163 VLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTA  242 (438)
T ss_dssp             EEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETTC-CCEEEEECCEEECTTCCEEEEEEE
T ss_pred             ceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceecccccccceeEEecCCceEEecCCcEEEEEEE
Confidence            1110000   0      112222222    4899999999876532110         0011233457789999999999


Q ss_pred             eeec--CCeeEEEEC--CEEEEecc------------CCccceEEEcc-----CceEEEcCCCCCCCeEEEEEEEeCCc-
Q psy15127        265 EGSP--LPSVFWTQE--GSQVLMFP------------GNAYGHLHVTQ-----EGTLRIQGVQKEDAGFFVCSALSVAG-  322 (633)
Q Consensus       265 ~g~p--~~~v~W~~~--g~~~~~~~------------~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~a~n~~g-  322 (633)
                      .|.|  .+.+.|+++  |..+....            .....++....     ...|.|.++..+|+|.|+|.|.|..+ 
T Consensus       243 ~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~  322 (438)
T 1qgc_4          243 SGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGD  322 (438)
T ss_dssp             ESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSC
T ss_pred             cccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCC
Confidence            9998  679999997  54432110            00113333332     23799999999999999999998443 


Q ss_pred             ----eeEEEEEEEEEecc----------------------------c-CCCc-eEEeCCCccccCC---CC----C----
Q psy15127        323 ----STTVRAFLQVREFC----------------------------V-LPKG-TFTLGQPNLATGN---SD----L----  357 (633)
Q Consensus       323 ----~~~~~~~l~v~~~~----------------------------~-~p~p-~~~~~~~~~~~g~---p~----~----  357 (633)
                          .......+.|....                            . .|.| .+.|.......+.   +.    .    
T Consensus       323 ~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~~~~  402 (438)
T 1qgc_4          323 EGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTL  402 (438)
T ss_dssp             CCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCEEETTEEEE
T ss_pred             ccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCccccCCcEEE
Confidence                11122344443211                            1 1333 4444332221110   00    0    


Q ss_pred             --ceEEecccccCCEEEEEEEEcCCcceeEEEEE
Q psy15127        358 --RRIACDLRETDSGLYTCTASSESGETSWSASL  389 (633)
Q Consensus       358 --~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l  389 (633)
                        .+.|..+..+| |.|+|.|.|..|.......|
T Consensus       403 ~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i  435 (438)
T 1qgc_4          403 SSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI  435 (438)
T ss_dssp             EEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEEC
T ss_pred             EEEEEEehhhcCC-ceEEEEEEeCCCCcceeeec
Confidence              24566677778 99999999999976555443

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.95  E-value=7.7e-27  Score=228.62  Aligned_cols=256  Identities=16%  Similarity=0.159  Sum_probs=177.5

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceE
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSI  149 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~  149 (633)
                      .+|.+...+..+.+.+|+.++|.|.+.+    .+.|++++...... ........|.|.+++.+|+|.|+|.+.|..+..
T Consensus         3 p~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~   77 (289)
T 3ejj_X            3 PAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTL-DPESPGSTLTTRNATFKNTGTYRCTELEDPMAG   77 (289)
T ss_dssp             -CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSSEE-CCCSSCCEEEESSCCGGGCEEEEEECCC-----
T ss_pred             CCcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceEEE-eccCCccEEEEeeeccccCEEEEEEEeccCCcc
Confidence            4677878888899999999999999876    49999877543210 011234689999999999999999999988888


Q ss_pred             EEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCC-eEEEEE-CCEEeccCCCeeEEeccceeeeEEE----
Q psy15127        150 SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKK-NGQFIDLESSKSLDLSRRTLGWLRV----  223 (633)
Q Consensus       150 s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~----  223 (633)
                      +..+.|.|..++..+...+....+.+|+.+.|.|.+ .+.+.+ .+.|++ ++..+..... ........+.+..+    
T Consensus        78 ~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~-~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~d  155 (289)
T 3ejj_X           78 STTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLI-TDPALKDSVSLMREGGRQVLRKTV-YFFSPWRGFIIRKAKVLD  155 (289)
T ss_dssp             CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEE-SCGGGGGSEEEEEGGGEECCTTCC-EEEETTTEEEESSCCGGG
T ss_pred             eeEEEEEEeCCCcceecccceEEEecCCceEeEEEc-cCCCcceEEEEEecCCeecCCCcc-EEECCCCCEEEeeccccc
Confidence            889999999874446667778889999999999995 555555 599987 5555543322 22222333333222    


Q ss_pred             eeeEEEEeecC-CCC---------------CCcccccccceeEEecCCceEEEEEEEee-ecCCeeEEEECCEEEEeccC
Q psy15127        224 RPLYWNVARPR-ANL---------------NPRYIGRKMASLLIWNHPRVNRLSCFAEG-SPLPSVFWTQEGSQVLMFPG  286 (633)
Q Consensus       224 ~g~y~C~a~~~-~~~---------------~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~~v~W~~~g~~~~~~~~  286 (633)
                      .|.|+|.+.+. .+.               +|.+..  ......+..|+.+.|.|.+.+ .|.+.+.|++++..+.....
T Consensus       156 ~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~--~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~  233 (289)
T 3ejj_X          156 SNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKL--EPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLN  233 (289)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEE--ESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEE
T ss_pred             CEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEe--cCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCC
Confidence            48999999843 221               111111  112233467999999999998 78899999999987642110


Q ss_pred             CccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEe
Q psy15127        287 NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE  334 (633)
Q Consensus       287 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  334 (633)
                      ...........+.|.|.++..+|.|.|+|.|.|..|..+.++.|.+..
T Consensus       234 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~  281 (289)
T 3ejj_X          234 SDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE  281 (289)
T ss_dssp             EEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC-
T ss_pred             cccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEe
Confidence            000011112345899999999999999999999999999999988764

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.95  E-value=9.5e-28  Score=237.43  Aligned_cols=252  Identities=16%  Similarity=0.250  Sum_probs=174.1

Q ss_pred             CCceEEEcCCeEEEEEEEecc-CCCeEEEEeCCccCC------------------CCCeEEc----ccceEEEccCCCCC
Q psy15127         78 PSDATVLSGSVVEFVCRVGGD-PLPTILWRRDDGKMP------------------TGRAKIL----DDRSLQIENVGPQD  134 (633)
Q Consensus        78 ~~~~~~~~G~~~~L~C~~~~~-p~p~i~W~~~~~~i~------------------~~~~~~~----~~~~L~i~~v~~~d  134 (633)
                      ++++.+.+|++++|.|.+.+. +.+.|+|+|++....                  .++....    .+.+|.|.+++.+|
T Consensus         6 ~p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D   85 (308)
T 4fom_A            6 EPHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSD   85 (308)
T ss_dssp             CCSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGG
T ss_pred             CCEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHH
Confidence            346789999999999998644 445799999654321                  1122221    23579999999999


Q ss_pred             CeEEEEEEEeC-CceEEEEEEEEEEeeccc-cccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEE
Q psy15127        135 EGLYICDVENL-VGSISLRASLTVHLLRDD-FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLD  212 (633)
Q Consensus       135 ~G~Y~C~~~n~-~g~~s~~~~l~V~~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~  212 (633)
                      +|.|+|.|.|. .+..+..+.+.+...++. ....+.......|+.+.|.|.+..|.|.+.+.|++++..+.........
T Consensus        86 ~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~  165 (308)
T 4fom_A           86 SGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPN  165 (308)
T ss_dssp             CEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTT
T ss_pred             CEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeee
Confidence            99999999886 556777778887766222 2334445556678999999986788999999999998776432111000


Q ss_pred             ---eccceeeeEE----EeeeEEEEeecCCCCCCccc------------ccccceeEEecCCceEEEEEEEeeecCC-ee
Q psy15127        213 ---LSRRTLGWLR----VRPLYWNVARPRANLNPRYI------------GRKMASLLIWNHPRVNRLSCFAEGSPLP-SV  272 (633)
Q Consensus       213 ---~~~~~~~~~~----~~g~y~C~a~~~~~~~p~~~------------~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~v  272 (633)
                         .....+.+..    ..|.|+|.|.|..+......            ............|+.++|.|.+.|+|+| .+
T Consensus       166 ~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v  245 (308)
T 4fom_A          166 ETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKS  245 (308)
T ss_dssp             SCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEE
T ss_pred             ecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEE
Confidence               0001111111    13799999999765432110            0011122345567899999999999998 69


Q ss_pred             EEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEecc
Q psy15127        273 FWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFC  336 (633)
Q Consensus       273 ~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  336 (633)
                      .|+|++..+..       ......+..|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.+.|
T Consensus       246 ~W~k~~~~~~~-------~~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P  302 (308)
T 4fom_A          246 VWSRLDGQWPD-------GLLASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPP  302 (308)
T ss_dssp             ECCBSSSCCCS-------SCBCSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC
T ss_pred             EEEECCeECCC-------cEEEcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCC
Confidence            99999876531       1122234456788999999999999999999999999999998643

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.94  E-value=1.2e-26  Score=231.64  Aligned_cols=247  Identities=14%  Similarity=0.101  Sum_probs=178.0

Q ss_pred             CceEEEcCCeEEEEEEEecc---------CCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCe-EEEEEEEeCCce
Q psy15127         79 SDATVLSGSVVEFVCRVGGD---------PLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEG-LYICDVENLVGS  148 (633)
Q Consensus        79 ~~~~~~~G~~~~L~C~~~~~---------p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~~~n~~g~  148 (633)
                      ..+.+.+|+.+.|.|.+.+.         |.+.|+|+|++..+...... ..++.|.|.+++.+|+| .|+|.|.|..|.
T Consensus        37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~-~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~  115 (329)
T 3oq3_B           37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR-VKNGDLWIANYTSNDSHRRYLCTVTTKNGD  115 (329)
T ss_dssp             EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT-EETTEEEESSCCGGGGGCCEEEEEECTTSC
T ss_pred             ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce-eecceEEEcCCChHhCCCcEEEEEEeCCCc
Confidence            56679999999999999874         55789999999877532111 45789999999999999 999999999877


Q ss_pred             EEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCC-CCeEEEEECCEEeccCCCeeEEeccceeeeEEE----
Q psy15127        149 ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQP-EPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV----  223 (633)
Q Consensus       149 ~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----  223 (633)
                      ......+.|...+|.+...+....+.+|+.+.|.|. ..+.| .+.+.|++++..+.......... ...+.+..+    
T Consensus       116 ~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~-~~g~p~~~~i~W~k~~~~l~~~~~~~~~~-~~~L~I~~v~~~D  193 (329)
T 3oq3_B          116 CVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCG-ILYAKHYNNITWYKNNQELIIDGTKYSQS-GQNLIIHNPELED  193 (329)
T ss_dssp             EEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECC-CCSCCCCCEEEEEETTEECCCSSSSEEEE-TTEEEECSCCGGG
T ss_pred             eeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEec-cCCCCCCceEEEEECCccCCCCCceEecC-CCEEEEeecChhh
Confidence            544444444444344333333334567999999998 68888 89999999999986443333222 444444333    


Q ss_pred             eeeEEEEeecC--CCCCC-c------cccc---------ccceeEEecCCceEEEEEEEeeec---CC-eeEEEECCEEE
Q psy15127        224 RPLYWNVARPR--ANLNP-R------YIGR---------KMASLLIWNHPRVNRLSCFAEGSP---LP-SVFWTQEGSQV  281 (633)
Q Consensus       224 ~g~y~C~a~~~--~~~~p-~------~~~~---------~~~~~~~~~~g~~~~l~C~~~g~p---~~-~v~W~~~g~~~  281 (633)
                      .|.|+|.|.|.  .+... .      +...         .......+..|+.++|.|.+.|.|   ++ .+.|+++|..+
T Consensus       194 ~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i  273 (329)
T 3oq3_B          194 SGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWI  273 (329)
T ss_dssp             CEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCB
T ss_pred             CEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeee
Confidence            48999999986  33110 0      0000         022335677899999999999998   67 88999999874


Q ss_pred             EeccCCccceEEEc-------cCceEEEcCCCCCCCe-EEEEEEEeCCceeEEEEEEEE
Q psy15127        282 LMFPGNAYGHLHVT-------QEGTLRIQGVQKEDAG-FFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       282 ~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      ....    .+....       ..+.|.|.++..+|.| .|+|.|.|..|..+.++.|.|
T Consensus       274 ~~~~----~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          274 IGLD----FGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             CCBC----SSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred             eccC----CceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence            2111    111111       3458999999999999 999999999999998888776

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.94  E-value=9.9e-28  Score=240.81  Aligned_cols=263  Identities=17%  Similarity=0.227  Sum_probs=193.2

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEe-------ccCCCeEEEEeCCccC--CCC--CeEEcccceEEEccCCCCCCeE
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVG-------GDPLPTILWRRDDGKM--PTG--RAKILDDRSLQIENVGPQDEGL  137 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~-------~~p~p~i~W~~~~~~i--~~~--~~~~~~~~~L~i~~v~~~d~G~  137 (633)
                      ...|.+...|.+..+.+|+.+.|.|.+.       +.|.+.|.|+|++..+  ...  ......++.|.|.+++.+|+|.
T Consensus        16 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~   95 (339)
T 3o4o_C           16 RSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGT   95 (339)
T ss_dssp             --CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEE
T ss_pred             hhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCEE
Confidence            3458899999999999999999999997       8889999999999873  332  2334567899999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEEeecccc-ccCCCceEEecCCcEEEEEeC----CCCCCCCeEEEEECCEEeccCCCeeEE
Q psy15127        138 YICDVENLVGSISLRASLTVHLLRDDF-RAEPKDTRVASGETALLECGP----PKGQPEPTLHWKKNGQFIDLESSKSLD  212 (633)
Q Consensus       138 Y~C~~~n~~g~~s~~~~l~V~~~~p~~-~~~~~~~~~~~g~~~~l~C~~----~~~~p~~~i~W~~~~~~~~~~~~~~~~  212 (633)
                      |+|.+.|..|..+..+.|.|..+++.. ........+.+|+.+.|.|.+    ..+.|.+.+.|+++|..+.........
T Consensus        96 Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~  175 (339)
T 3o4o_C           96 YVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLS  175 (339)
T ss_dssp             EECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEE
T ss_pred             EEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEE
Confidence            999999999988899999998873221 122334578899999999995    577889999999999988765443332


Q ss_pred             ecc-ceeeeEEE----eeeEEEEeecCCCCC--------------------CcccccccceeEEecCCceEEEEEEE---
Q psy15127        213 LSR-RTLGWLRV----RPLYWNVARPRANLN--------------------PRYIGRKMASLLIWNHPRVNRLSCFA---  264 (633)
Q Consensus       213 ~~~-~~~~~~~~----~g~y~C~a~~~~~~~--------------------p~~~~~~~~~~~~~~~g~~~~l~C~~---  264 (633)
                      ... ..+.+..+    .|.|+|.+.|..+..                    |.+..  ......+..|+.+.|.|.+   
T Consensus       176 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~--~~~~~~v~~G~~v~L~C~~~~~  253 (339)
T 3o4o_C          176 VRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIIS--PLKTISASLGSRLTIPCKVFLG  253 (339)
T ss_dssp             CTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECC--CSCCCCCCCCSCCCCCCCEEES
T ss_pred             cCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEec--CCceeEeccCCCEEEEEEEECC
Confidence            222 23333322    489999999876521                    11111  1223345678999999999   


Q ss_pred             eeec-CCeeEEEECCEEEEeccC----CccceEEEccCc------eEEEcCCCCCCC-eEEEEEEEeCCceeEEEEEEEE
Q psy15127        265 EGSP-LPSVFWTQEGSQVLMFPG----NAYGHLHVTQEG------TLRIQGVQKEDA-GFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       265 ~g~p-~~~v~W~~~g~~~~~~~~----~~~~~~~~~~~~------~l~i~~~~~~d~-G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      .|.| ++.+.|+++|..+.....    ....+.....++      .|.|.++..+|. |.|+|.|.|..|..+..+.+.+
T Consensus       254 ~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~  333 (339)
T 3o4o_C          254 TGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKE  333 (339)
T ss_dssp             SSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCCC
T ss_pred             CCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhhH
Confidence            8999 789999999976532111    011222233334      799999999997 9999999999999988777655


Q ss_pred             E
Q psy15127        333 R  333 (633)
Q Consensus       333 ~  333 (633)
                      .
T Consensus       334 ~  334 (339)
T 3o4o_C          334 H  334 (339)
T ss_dssp             -
T ss_pred             h
Confidence            3

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.94  E-value=2.9e-26  Score=224.49  Aligned_cols=250  Identities=13%  Similarity=0.141  Sum_probs=167.0

Q ss_pred             CeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcc----cceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127         72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD----DRSLQIENVGPQDEGLYICDVENLVG  147 (633)
Q Consensus        72 p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~~~n~~g  147 (633)
                      |.|......+.+.+|+.++|.|.+.+.    ++|+|++..+.. +.....    .+.|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   75 (289)
T 3mjg_X            1 LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQ-EMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRG   75 (289)
T ss_dssp             CCBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSE-EEEECTTSCEEEEEEECSCCGGGCEEEEEECCC---
T ss_pred             CeecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCccc-ceeccCCCceeEEEEEccCChhhCEEEEEEEcccCC
Confidence            455556667889999999999999864    999999998742 222222    25899999999999999999999887


Q ss_pred             e---EEEEEEEEEEeeccccccCCCc---eEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeE
Q psy15127        148 S---ISLRASLTVHLLRDDFRAEPKD---TRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWL  221 (633)
Q Consensus       148 ~---~s~~~~l~V~~~~p~~~~~~~~---~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~  221 (633)
                      .   .+..+.|.|..+...+......   ..+.+|+.+.|.|.+.  .|.+.+.|++++........  . .....+...
T Consensus        76 ~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~--~p~~~v~w~~~~~~~~~~~~--~-~~~~~~~~~  150 (289)
T 3mjg_X           76 LETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT--DPQLVVTLHEKKGDVALPVP--Y-DHQRGFSGI  150 (289)
T ss_dssp             ---CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS--CTTSCEEEEESSCCSCCCCC--E-ETTTEEEEC
T ss_pred             CCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC--CCCceEEEEeCCCCCcccee--e-cCCcCeeee
Confidence            6   3445555555331222212212   5688999999999954  67788888886522221110  0 111111123


Q ss_pred             EEeeeEEEEeecCCCC--------------CCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCC
Q psy15127        222 RVRPLYWNVARPRANL--------------NPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGN  287 (633)
Q Consensus       222 ~~~g~y~C~a~~~~~~--------------~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~  287 (633)
                      ...|.|+|.|.+..+.              +|.+..  ......+..|+.+.|.|.+.|.|.+.+.|++++........ 
T Consensus       151 ~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~--~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~-  227 (289)
T 3mjg_X          151 FEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSV--NAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVE-  227 (289)
T ss_dssp             CCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEE--EESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCC-
T ss_pred             ccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEE--eCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCccc-
Confidence            3469999999865431              111111  11224467899999999999999999999987753211000 


Q ss_pred             ccceEEE------ccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEecc
Q psy15127        288 AYGHLHV------TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFC  336 (633)
Q Consensus       288 ~~~~~~~------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  336 (633)
                        .....      .....|.|.++..+|+|.|+|.|.|..|....++.|.|...+
T Consensus       228 --~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~  280 (289)
T 3mjg_X          228 --PVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVE  280 (289)
T ss_dssp             --CEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC
T ss_pred             --ccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEe
Confidence              01111      123589999999999999999999999999999999998654

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.94  E-value=2.3e-26  Score=231.84  Aligned_cols=254  Identities=17%  Similarity=0.146  Sum_probs=156.2

Q ss_pred             CCceEEEcCCeEEEEEEEeccCC-----------CeEEEEeCCcc------CC---CCCeEEcccceEEEccCCCCCCeE
Q psy15127         78 PSDATVLSGSVVEFVCRVGGDPL-----------PTILWRRDDGK------MP---TGRAKILDDRSLQIENVGPQDEGL  137 (633)
Q Consensus        78 ~~~~~~~~G~~~~L~C~~~~~p~-----------p~i~W~~~~~~------i~---~~~~~~~~~~~L~i~~v~~~d~G~  137 (633)
                      ..++.+.+|+.+.|.|.+.+.|.           +.|.|+|++..      +.   ...+....++.|.|.+++.+|+|.
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   93 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGN   93 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEE
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEE
Confidence            56788999999999999987654           89999998842      21   123334456799999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEEeeccccc---cCCCceEEecCCcEEEEEeC----CCCCCCCeEEEEECCEEeccCCCee
Q psy15127        138 YICDVENLVGSISLRASLTVHLLRDDFR---AEPKDTRVASGETALLECGP----PKGQPEPTLHWKKNGQFIDLESSKS  210 (633)
Q Consensus       138 Y~C~~~n~~g~~s~~~~l~V~~~~p~~~---~~~~~~~~~~g~~~~l~C~~----~~~~p~~~i~W~~~~~~~~~~~~~~  210 (633)
                      |+|.|.|..+.....+.|.|..++..+.   ..+....+.+|+.+.|.|.+    ..+.|.+.+.|++++..+...  ..
T Consensus        94 Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~--~~  171 (349)
T 4dep_C           94 YTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNF--NN  171 (349)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSC--SS
T ss_pred             EEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCc--cc
Confidence            9999999998888889999988632221   22345577899999999983    266899999999999988543  22


Q ss_pred             EEeccceeeeEEE----eeeEEEEeecCC-CCC--------------------CcccccccceeEEecCCceEEEEEEEe
Q psy15127        211 LDLSRRTLGWLRV----RPLYWNVARPRA-NLN--------------------PRYIGRKMASLLIWNHPRVNRLSCFAE  265 (633)
Q Consensus       211 ~~~~~~~~~~~~~----~g~y~C~a~~~~-~~~--------------------p~~~~~~~~~~~~~~~g~~~~l~C~~~  265 (633)
                      +......+.+..+    .|.|+|.|.|.. +..                    |.+..........+..|+.++|.|.+.
T Consensus       172 ~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~  251 (349)
T 4dep_C          172 VIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVY  251 (349)
T ss_dssp             EEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEE
T ss_pred             eeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEE
Confidence            2222233444333    489999999865 211                    111111111112566789999999999


Q ss_pred             ----eecCCeeEEEECCEEEEeccC-CccceEE-------EccCceEEEcCCCCCCC-eEEEEEEEeCCceeEEEEEEEE
Q psy15127        266 ----GSPLPSVFWTQEGSQVLMFPG-NAYGHLH-------VTQEGTLRIQGVQKEDA-GFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       266 ----g~p~~~v~W~~~g~~~~~~~~-~~~~~~~-------~~~~~~l~i~~~~~~d~-G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                          |.|.+.+.|+++|..+..... .......       ......|.|.++..+|. |.|+|.|.|..|.....+.|.|
T Consensus       252 ~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v  331 (349)
T 4dep_C          252 FSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ  331 (349)
T ss_dssp             ECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEEEEECC---
T ss_pred             EccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEee
Confidence                568899999999987753111 0000000       01123599999999999 9999999999999999988888


Q ss_pred             E
Q psy15127        333 R  333 (633)
Q Consensus       333 ~  333 (633)
                      .
T Consensus       332 ~  332 (349)
T 4dep_C          332 K  332 (349)
T ss_dssp             -
T ss_pred             e
Confidence            5

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.94  E-value=1.4e-25  Score=223.85  Aligned_cols=249  Identities=16%  Similarity=0.162  Sum_probs=162.3

Q ss_pred             CeeeeCCCceEEEcCCeEEEEEEEecc-CCCeEEEEeCCccCC----------CCCeEE--------cccceEEEccCCC
Q psy15127         72 PFPISEPSDATVLSGSVVEFVCRVGGD-PLPTILWRRDDGKMP----------TGRAKI--------LDDRSLQIENVGP  132 (633)
Q Consensus        72 p~~~~~~~~~~~~~G~~~~L~C~~~~~-p~p~i~W~~~~~~i~----------~~~~~~--------~~~~~L~i~~v~~  132 (633)
                      ..++..|..+.+.+|+++.|.|.+.+. |.+.|+|+|++....          ..+...        .....|.|.+++.
T Consensus         4 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~   83 (327)
T 2wng_A            4 LQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITP   83 (327)
T ss_dssp             CCEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCG
T ss_pred             eEEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCcc
Confidence            456777889999999999999999887 888999999986532          113332        2245799999999


Q ss_pred             CCCeEEEEEEEeCCce-----EEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCC--eEEEEECCEEecc
Q psy15127        133 QDEGLYICDVENLVGS-----ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP--TLHWKKNGQFIDL  205 (633)
Q Consensus       133 ~d~G~Y~C~~~n~~g~-----~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~i~W~~~~~~~~~  205 (633)
                      +|+|.|+|.|.|..+.     .+..+.|.|..++....+......+.+|+.+.|.|.+ .+.|++  .+.|+++|..+..
T Consensus        84 ~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~-~g~p~~~~~v~W~k~g~~l~~  162 (327)
T 2wng_A           84 ADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCES-HGFSPRDITLKWFKNGNELSD  162 (327)
T ss_dssp             GGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEE-EEEBSSCCEEEEEETTEECCC
T ss_pred             ccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEE-eCccCCCcEEEEEECCEEccc
Confidence            9999999999998653     2245678887763222222234567899999999995 565544  9999999988764


Q ss_pred             CCCeeEEe-ccce------eeeE----EEeeeEEEEeecCCCCCCc------c--cccccceeE----EecCCceEEEEE
Q psy15127        206 ESSKSLDL-SRRT------LGWL----RVRPLYWNVARPRANLNPR------Y--IGRKMASLL----IWNHPRVNRLSC  262 (633)
Q Consensus       206 ~~~~~~~~-~~~~------~~~~----~~~g~y~C~a~~~~~~~p~------~--~~~~~~~~~----~~~~g~~~~l~C  262 (633)
                      ........ ....      +.+.    ...|.|+|.|.|..+....      +  .....+...    .+.+|+.++|.|
T Consensus       163 ~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~G~~v~l~C  242 (327)
T 2wng_A          163 FQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTC  242 (327)
T ss_dssp             EEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEECCSSTTCCEEEE
T ss_pred             cccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCCcCCCCcEEEEE
Confidence            33111100 0111      1111    1138999999997654210      0  001111111    145899999999


Q ss_pred             EEeeecCC--eeEEEECCEEEEeccCCccceEEEccC------ceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127        263 FAEGSPLP--SVFWTQEGSQVLMFPGNAYGHLHVTQE------GTLRIQGVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       263 ~~~g~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                      .+.|.+++  .+.|+++|..+.....   .......+      ..|.|..+..+|.|.|+|.|.|..|..
T Consensus       243 ~~~g~~p~~~~v~W~k~g~~l~~~~~---~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~  309 (327)
T 2wng_A          243 QVRKFYPQRLQLTWLENGNVSRTETA---STVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPA  309 (327)
T ss_dssp             EEEEEBSSCEEEEEEETTEEEEEEEC---CSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCC
T ss_pred             EEccccCCCcEEEEEECCeEccCccc---CceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCC
Confidence            99996554  8999999998753211   11222222      258889999999999999999999875

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.94  E-value=4.3e-27  Score=245.11  Aligned_cols=285  Identities=14%  Similarity=0.195  Sum_probs=183.3

Q ss_pred             CceEEee---CceEEEcCCCC--CCeEEEEEEe-------------cC---cCCeeeeCCCceEEEcCCeEEEEEEEec-
Q psy15127         40 RRSRSIF---GSVLGARGALS--DDQWKLIAKE-------------AL---IKPFPISEPSDATVLSGSVVEFVCRVGG-   97 (633)
Q Consensus        40 ~~~~~~~---~~~L~i~~v~~--~G~Y~C~a~~-------------v~---~~p~~~~~~~~~~~~~G~~~~L~C~~~~-   97 (633)
                      .|+.+..   .++|.|.+++.  +|.|+|.|.|             +.   .+|.+...+....+.+|+.+.|.|.+.+ 
T Consensus        64 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~  143 (438)
T 1qgc_4           64 DRFSGSGSRTDFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNF  143 (438)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEE
T ss_pred             CcEEEEccCCcEEEEeCCCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccc
Confidence            4665543   24799999998  9999999988             11   2455444333333346889999999987 


Q ss_pred             cCCC-eEEEEeCCccCCCCCeE-----------EcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEeeccccc
Q psy15127         98 DPLP-TILWRRDDGKMPTGRAK-----------ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFR  165 (633)
Q Consensus        98 ~p~p-~i~W~~~~~~i~~~~~~-----------~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~  165 (633)
                      .|.+ .|+|+|+|..+..+...           ....+.|.|.+++.+|+|.|+|.|.|..+.......+.+..+ +...
T Consensus       144 ~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~-~~~~  222 (438)
T 1qgc_4          144 YPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC-EVML  222 (438)
T ss_dssp             BSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETTC--CCEE
T ss_pred             cCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceecccccccc-eeEE
Confidence            6777 89999999887654111           111247999999999999999999998876433333322222 2223


Q ss_pred             cCCCceEEecCCcEEEEEeCCCCCC--CCeEEEEEC--CEEecc-----------------CCCeeEEec----cceeee
Q psy15127        166 AEPKDTRVASGETALLECGPPKGQP--EPTLHWKKN--GQFIDL-----------------ESSKSLDLS----RRTLGW  220 (633)
Q Consensus       166 ~~~~~~~~~~g~~~~l~C~~~~~~p--~~~i~W~~~--~~~~~~-----------------~~~~~~~~~----~~~~~~  220 (633)
                      ..+....+.+|+.+.|.|. ..|.|  .+.+.|+|+  +..+..                 ..+..+...    ...|.+
T Consensus       223 ~~~~~~~v~~G~~v~L~C~-~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I  301 (438)
T 1qgc_4          223 VESGGGLVKPGGSLKLSCT-ASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQM  301 (438)
T ss_dssp             EEECCEEECTTCCEEEEEE-EESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEE
T ss_pred             ecCCceEEecCCcEEEEEE-EcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEE
Confidence            3455677899999999999 57777  679999996  543321                 111111110    112222


Q ss_pred             EEE----eeeEEEEeecCCC--------CCCccccc----ccceeE------EecCCceEEEEEEEeee-cCC-eeEEEE
Q psy15127        221 LRV----RPLYWNVARPRAN--------LNPRYIGR----KMASLL------IWNHPRVNRLSCFAEGS-PLP-SVFWTQ  276 (633)
Q Consensus       221 ~~~----~g~y~C~a~~~~~--------~~p~~~~~----~~~~~~------~~~~g~~~~l~C~~~g~-p~~-~v~W~~  276 (633)
                      ..+    .|.|+|.|.|..+        ....+...    ..+...      .+..|+.++|.|.+.|. |.+ .+.|++
T Consensus       302 ~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~  381 (438)
T 1qgc_4          302 SSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNS  381 (438)
T ss_dssp             CSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGG
T ss_pred             CCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEec
Confidence            222    4899999998332        11111111    011111      13468999999999997 877 999999


Q ss_pred             CCEEEEeccCCccceEEEc----cCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy15127        277 EGSQVLMFPGNAYGHLHVT----QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL  330 (633)
Q Consensus       277 ~g~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  330 (633)
                      +|..+...   ........    ..+.|.|.++..+| |.|+|.|.|..|.......+
T Consensus       382 ~g~~~~~~---~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i  435 (438)
T 1qgc_4          382 GSLSSGVH---TFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI  435 (438)
T ss_dssp             GTCCSSEE---ECCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEEC
T ss_pred             CCCCCcee---ecCccccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeec
Confidence            99765321   11111111    12368999988888 99999999999987665544

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.94  E-value=1.7e-25  Score=216.01  Aligned_cols=224  Identities=19%  Similarity=0.241  Sum_probs=165.3

Q ss_pred             EEEcCCeEEEEEEEec-cCCC--eEEEEeCCccCCCCCeEEcccceEEEccC---CCCCCeE--EEEEEEeCCceEEEEE
Q psy15127         82 TVLSGSVVEFVCRVGG-DPLP--TILWRRDDGKMPTGRAKILDDRSLQIENV---GPQDEGL--YICDVENLVGSISLRA  153 (633)
Q Consensus        82 ~~~~G~~~~L~C~~~~-~p~p--~i~W~~~~~~i~~~~~~~~~~~~L~i~~v---~~~d~G~--Y~C~~~n~~g~~s~~~  153 (633)
                      .+.+|+.++|.|.+.+ .|.+  .|+|+|+|..+..  .....+..|.+..+   +.+|+|.  |+|.+.|..|..+..+
T Consensus        14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~--~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~~   91 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQ   91 (265)
T ss_dssp             EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC--EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEEE
T ss_pred             eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc--eEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcEEEE
Confidence            6899999999999998 7777  9999999998865  23334456777666   7788885  9999999999988999


Q ss_pred             EEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEE----EeeeEEE
Q psy15127        154 SLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLR----VRPLYWN  229 (633)
Q Consensus       154 ~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~y~C  229 (633)
                      .|.|...++ ..+.+....+.+|+.+.|.|.+ .  |.+.+.|  +|..+......      ..+.+..    ..|.|+|
T Consensus        92 ~l~V~~~p~-p~~~~~~~~v~~G~~v~l~C~~-~--p~~~i~W--~g~~~~~~~~~------~~l~i~~~~~~~~g~Y~C  159 (265)
T 2oz4_A           92 TVTIYSFPA-PNVILTKPEVSEGTEVTVKCEA-H--PRAKVTL--NGVPAQPLGPR------AQLLLKATPEDNGRSFSC  159 (265)
T ss_dssp             EEEEECCCC-CEEEESCSEEETTCEEEEEEEC-C--TTSEEEE--SSCSSSCCSSE------ECCEEECCGGGTTEEEEE
T ss_pred             EEEEeCCCC-ceeecCCceecCCCcEEEEEEc-c--CCCEEEE--CCEEccCCCCc------EEEEEccccccCCceEEE
Confidence            999987522 3333456678899999999995 4  8899999  77766432211      1122111    1357999


Q ss_pred             EeecCC-CCC--------------CcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEE
Q psy15127        230 VARPRA-NLN--------------PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV  294 (633)
Q Consensus       230 ~a~~~~-~~~--------------p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~  294 (633)
                      .|.|.. +..              |.+..........+.+|+.++|.|.+.|+|.|.+.|+++|..+.            
T Consensus       160 ~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~------------  227 (265)
T 2oz4_A          160 SATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL------------  227 (265)
T ss_dssp             EEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEEC------------
T ss_pred             EEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcccC------------
Confidence            998643 321              22222222334567789999999999999999999999997321            


Q ss_pred             ccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEe
Q psy15127        295 TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE  334 (633)
Q Consensus       295 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  334 (633)
                       ..+.+.  .+..+|+|.|+|.|.|..|..+..+.|.|..
T Consensus       228 -~~g~~~--~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  264 (265)
T 2oz4_A          228 -PIGESV--TVTRDLEGTYLCRARSTQGEVTREVTVNVLS  264 (265)
T ss_dssp             -CTTSCE--ECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             -CCCcEE--EeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence             223333  3778999999999999999999999998863

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.94  E-value=1.5e-25  Score=221.84  Aligned_cols=264  Identities=13%  Similarity=0.133  Sum_probs=174.3

Q ss_pred             EEecCCceEEEEEEEeee-----cCCeeEEEECCEEEEeccCCccceEEEccC--ceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127        250 LIWNHPRVNRLSCFAEGS-----PLPSVFWTQEGSQVLMFPGNAYGHLHVTQE--GTLRIQGVQKEDAGFFVCSALSVAG  322 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~-----p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~a~n~~g  322 (633)
                      .++..|++++|.|.+.+.     |.+.+.|.++|..+.   .... +......  +.|.|.++...|+|.|+|.+.+..+
T Consensus        10 ~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~---~~~~-~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~   85 (313)
T 2d9q_B           10 PIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQP---GGRQ-QRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSL   85 (313)
T ss_dssp             SEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCT---TCEE-CCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSE
T ss_pred             cEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECC---ccce-EEEecCeEEEEEEEeccCCCccceEEeeecCCCc
Confidence            456789999999999997     578999999998652   1110 1011111  4688999988888888887754332


Q ss_pred             eeEEEEEEEEEecccCCCceEEeCCCccccCCCCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceec
Q psy15127        323 STTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHR  402 (633)
Q Consensus       323 ~~~~~~~l~v~~~~~~p~p~~~~~~~~~~~g~p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~  402 (633)
                      ....                                                           .+.|.|..+        
T Consensus        86 ~~~~-----------------------------------------------------------~~~l~v~~~--------   98 (313)
T 2d9q_B           86 QILD-----------------------------------------------------------QVELRAGYP--------   98 (313)
T ss_dssp             EEEE-----------------------------------------------------------EEEEEECCC--------
T ss_pred             eeEE-----------------------------------------------------------EEEEccCCC--------
Confidence            2111                                                           223333332        


Q ss_pred             CCCCCCCCCCCCCcEEEEe-eCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCC-----CCeEEEEEeeeeceEEEe--
Q psy15127        403 MPDSGLFPGPPAAPVILNT-TRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQ-----TGWVVAAHRITSTSITVS--  474 (633)
Q Consensus       403 ~~~~~~~p~~p~~~~~~~~-~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~-----~~~~~~~~~~~~~~~~i~--  474 (633)
                             |++|..+.+... ...++.++|+++.+.   +. ...|.|+|+..+..     ..|...........++|.  
T Consensus        99 -------P~~P~~l~c~~~~~~~~~~~~W~~~~~~---~~-~~~Y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (313)
T 2d9q_B           99 -------PAIPHNLSCLMNLTTSSLICQWEPGPET---HL-PTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRK  167 (313)
T ss_dssp             -------CCCCEEEEEEEETTTTEEEEEEECCSCC---SS-CCEEEEEEEECCTTSCSCCCCEEEECCCTTCSEEEEEGG
T ss_pred             -------CCCCccceeeECCCCccEEEEecCCCCC---CC-ceeEEEEEEecCCCcccCCcccccCCCCCCCcEEEECcc
Confidence                   344666766666 368999999998853   33 45699999876421     223322111223456664  


Q ss_pred             cCCCCCeEEEEEEEEeccccCCCCCCCCceeecCC-CCCCCcchHHHHHHHhCCceEEeeeeeec------ccceEEEEE
Q psy15127        475 DLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGL-NSLVPQHLLDEARARLGTKVVNLRELIPT------ASTAVRITW  547 (633)
Q Consensus       475 ~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~si~v~W  547 (633)
                      +|.+++.|.|+|.|.|..|.+..+ .. .+.+... .|.+|.++                .+...      ..+++.|+|
T Consensus       168 ~L~~~~~Y~f~V~A~N~~G~~~s~-~~-~~~~~~~~~p~pP~~~----------------~~~~~~~~~~~~~~~l~l~W  229 (313)
T 2d9q_B          168 HLLLYQNMGIWVQAENALGTSMSP-QL-CLDPMDVVKLEPPMLR----------------TMDPSPEAAPPQAGCLQLSW  229 (313)
T ss_dssp             GCCSSSCEEEEEEEEETTEEEECC-CE-EECGGGGEECCCCEEE----------------ECCC-------CCSCEEEEE
T ss_pred             ccccceeEEEEEEEECCCCCccCc-cE-EEehhheeccCcCcee----------------EEEEecccccCCCCeEEEEE
Confidence            599999999999999999997432 22 2333332 35444443                45544      468999999


Q ss_pred             EEecCCCcccccchhhhhcceeEEEEE-EcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccc
Q psy15127        548 EVSWGSVPQHLLDEARARLGTKVVNLR-ELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKT  626 (633)
Q Consensus       548 ~~p~~~~p~~~~~~~~~i~~y~~i~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~  626 (633)
                      ++|        ...++.+++| .|+|+ ..+..       .|+..+.    .....+.++|.+|+|++.|.|+|+|.|..
T Consensus       230 ~~p--------~~~~~~~l~Y-~v~y~~~~~~~-------~w~~~~~----~~~~~~~~~l~~L~p~t~Y~~rVra~~~~  289 (313)
T 2d9q_B          230 EPW--------QPGLHINQKC-ELRHKPQRGEA-------SWALVGP----LPLEALQYELCGLLPATAYTLQIRCIRWP  289 (313)
T ss_dssp             ECC--------GGGTTSCEEE-EEEEEESSSCC-------CCEEEEE----ECSCEEEEEECSCCSCCCEEEEEEEEECS
T ss_pred             CCC--------CCCCceeEEE-EEEEccCCCCC-------CcEEccc----ccCcceEEEEeCCCCCCeEEEEEEeeECC
Confidence            954        2234446899 99999 55443       3764421    12356889999999999999999999999


Q ss_pred             cccccCC
Q psy15127        627 VEGARLD  633 (633)
Q Consensus       627 g~g~~s~  633 (633)
                      |.|++|+
T Consensus       290 g~G~wS~  296 (313)
T 2d9q_B          290 LPGHWSD  296 (313)
T ss_dssp             SCCCCCC
T ss_pred             CCCccCC
Confidence            9998764

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.93  E-value=9e-26  Score=225.69  Aligned_cols=253  Identities=16%  Similarity=0.242  Sum_probs=175.1

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEecc----CCCeEEEEeCCcc---------------C---CCCCeEEc----ccce
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGD----PLPTILWRRDDGK---------------M---PTGRAKIL----DDRS  124 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~----p~p~i~W~~~~~~---------------i---~~~~~~~~----~~~~  124 (633)
                      ++.++..+..+.+.+|++++|.|.+.+.    +.+.+.|+|++..               +   ..++....    .+.+
T Consensus        14 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   93 (331)
T 3u83_A           14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGT   93 (331)
T ss_dssp             -------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCC
T ss_pred             CcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCce
Confidence            3455666778899999999999999775    4557999995421               1   12344433    2468


Q ss_pred             EEEccCCCCCCeEEEEE-EEeCCceEEEEEEEEEEeeccccc--cCCCceEEecC---CcEEEEEeCCCCCCCCeEEEEE
Q psy15127        125 LQIENVGPQDEGLYICD-VENLVGSISLRASLTVHLLRDDFR--AEPKDTRVASG---ETALLECGPPKGQPEPTLHWKK  198 (633)
Q Consensus       125 L~i~~v~~~d~G~Y~C~-~~n~~g~~s~~~~l~V~~~~p~~~--~~~~~~~~~~g---~~~~l~C~~~~~~p~~~i~W~~  198 (633)
                      |.|.+++.+|+|.|+|. +.+..+..+..+.|.|..+ |.+.  ..+....+.+|   +.+.|.|.+..+.|.+.+.|++
T Consensus        94 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~-p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~  172 (331)
T 3u83_A           94 IRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAK-PTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWET  172 (331)
T ss_dssp             EEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBC-CEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEE
T ss_pred             EEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecC-CcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEc
Confidence            99999999999999998 5566777888899999987 5442  34556678888   7799999756889999999999


Q ss_pred             CCEEeccCCCeeEEeccceeee---E-------EEeeeEEEEeecCCCCC-----------CcccccccceeEEecCCce
Q psy15127        199 NGQFIDLESSKSLDLSRRTLGW---L-------RVRPLYWNVARPRANLN-----------PRYIGRKMASLLIWNHPRV  257 (633)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~---~-------~~~g~y~C~a~~~~~~~-----------p~~~~~~~~~~~~~~~g~~  257 (633)
                      ++......  .........+.+   +       ...|.|+|.|.|..+..           |.+.. .......+..|+.
T Consensus       173 ~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~-~~~~~~~~~~g~~  249 (331)
T 3u83_A          173 RLKGEAEY--QEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTI-EGFDGNWYLQRMD  249 (331)
T ss_dssp             SSCCEEEE--EEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEE-ECCCSCCBTTCCC
T ss_pred             CCCCcccc--ceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEE-ecCCCceEeCCCe
Confidence            53221100  001111111111   1       12479999999986531           11110 1111123557899


Q ss_pred             EEEEEEEeeecCCe-eEEEECCEEEEeccCCccceEEEccCceEEEc-CCCCCCCeEEEEEEEeCCceeEEEEEEEEEec
Q psy15127        258 NRLSCFAEGSPLPS-VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQ-GVQKEDAGFFVCSALSVAGSTTVRAFLQVREF  335 (633)
Q Consensus       258 ~~l~C~~~g~p~~~-v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  335 (633)
                      +.|.|.+.|+|.+. +.|++++..+..       . ....+++|.|. ++..+|.|.|+|.|.|..|..+..+.|.|...
T Consensus       250 ~~l~C~~~g~p~p~~i~W~~~~~~~~~-------~-~~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  321 (331)
T 3u83_A          250 VKLTCKADANPPATEYHWTTLNGSLPK-------G-VEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEA  321 (331)
T ss_dssp             EEEEEEEEEESCCCEEEEEETTBSCCT-------T-EEEETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC-
T ss_pred             EEEEEeCcCCCCCCEEEEEECCCcccc-------c-ceecCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEecc
Confidence            99999999999998 999999986531       1 12245689999 99999999999999999999999999888754

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.93  E-value=2.5e-26  Score=225.31  Aligned_cols=258  Identities=16%  Similarity=0.134  Sum_probs=174.6

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcc---cceEEEccCCCCCCeEEEEEEEeC
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD---DRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      ..+|.|...+....+.+|+.++|.|.+.+.    +.|++++...    .....   .+.|.|.+++.+|+|.|+|.+.|.
T Consensus         2 ~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~   73 (292)
T 4dkd_C            2 GSIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSPH----WTLYSDGSSSILSTNNATFQNTGTYRCTEPGD   73 (292)
T ss_dssp             --CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCSS----CEECCBTTEEEEEESSCCGGGCSCEEECCCC-
T ss_pred             CCCceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCCc----eEEeccCceEEEEEcccccccCEEEEEEEccC
Confidence            357899999999999999999999999763    9999765432    12221   358999999999999999999998


Q ss_pred             CceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECC-EEeccCCCeeEEeccceeeeE---
Q psy15127        146 VGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNG-QFIDLESSKSLDLSRRTLGWL---  221 (633)
Q Consensus       146 ~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~-~~~~~~~~~~~~~~~~~~~~~---  221 (633)
                      .+..+..+.|.|..++..+...+....+.+|+.+.|.|.+....+.+.+.|++++ ..+.... .........+.+.   
T Consensus        74 ~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~-~~~~~~~~~L~i~~~~  152 (292)
T 4dkd_C           74 PLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHT-NYSFSPWHGFTIHRAK  152 (292)
T ss_dssp             ---CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESSGGGGSSEEEEEGGGCCCCSSC-CEECCSSSCCEETTCC
T ss_pred             CCCcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCCCCcceeEEEEecCCCccccCC-cccccCCceEEECCCC
Confidence            8888888999999874445667778889999999999995432222789999974 4333222 2211122223222   


Q ss_pred             -EEeeeEEEEeecCCCCCCc--c--ccc----------ccceeEEecCCceEEEEEEEeeecC-CeeEEEECCEEEEecc
Q psy15127        222 -RVRPLYWNVARPRANLNPR--Y--IGR----------KMASLLIWNHPRVNRLSCFAEGSPL-PSVFWTQEGSQVLMFP  285 (633)
Q Consensus       222 -~~~g~y~C~a~~~~~~~p~--~--~~~----------~~~~~~~~~~g~~~~l~C~~~g~p~-~~v~W~~~g~~~~~~~  285 (633)
                       ...|.|+|.+.|..+....  +  ...          .......+..|+.+.|.|.+.+.|+ +.+.|++++..+....
T Consensus       153 ~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~  232 (292)
T 4dkd_C          153 FIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQ  232 (292)
T ss_dssp             GGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCB
T ss_pred             HHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCc
Confidence             2258999999976552110  0  000          0111122357899999999998776 4788999887553211


Q ss_pred             CCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEec
Q psy15127        286 GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREF  335 (633)
Q Consensus       286 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  335 (633)
                      ............+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|...
T Consensus       233 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~  282 (292)
T 4dkd_C          233 QSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVES  282 (292)
T ss_dssp             EEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC---
T ss_pred             cceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeC
Confidence            10000001123358999999999999999999999999999999988754

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}

Probab=99.92  E-value=2.6e-26  Score=248.58  Aligned_cols=483  Identities=12%  Similarity=0.106  Sum_probs=269.8

Q ss_pred             eCCCceEEEcCCeEEEEEEEe-------ccCCCeEEEEeCCccCCCCCeEEcc--cceEEEccCCCCCCeEEEEEEEeCC
Q psy15127         76 SEPSDATVLSGSVVEFVCRVG-------GDPLPTILWRRDDGKMPTGRAKILD--DRSLQIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~-------~~p~p~i~W~~~~~~i~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      ..|.+..+..|++++|.|.+.       +.+.+.|.|+++|..++........  ...|+|.++...|++ |+|.+....
T Consensus         8 i~p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~~~i~W~~~~~~i~~~~~~~~~~~~~~l~i~~~~~~~~~-y~C~~~~~~   86 (589)
T 3l5h_A            8 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQ-LTCNILTFG   86 (589)
T ss_dssp             CSCSCCCCCSSSCCCCCC-CCTTTTTTTTCCTTTCCCBCSSSBSCGGGCBCCSSSCCBCCCCCCCSSCCC-CCCC-CCTT
T ss_pred             EecCCCEEeCCCCEEEEEEEeCccCccccccccceEEEeCCEECChHHccccCCcEeEEEEecCCCccee-eEEecccCC
Confidence            457778899999999999997       5667889999999888654333222  357999999998865 889886311


Q ss_pred             --ceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEE-------eccCC----CeeEEe
Q psy15127        147 --GSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQF-------IDLES----SKSLDL  213 (633)
Q Consensus       147 --g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~-------~~~~~----~~~~~~  213 (633)
                        ......+.|.|..+ |             +....|.|. ..+.....+.|......       +....    ......
T Consensus        87 ~~~~~~~~~~l~v~~p-P-------------~~P~nl~c~-~~~~~~~~~~W~~~~~~~~~~~y~l~~~~~~~~~~~c~~  151 (589)
T 3l5h_A           87 QLEQNVYGITIISGLP-P-------------EKPKNLSCI-VNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKA  151 (589)
T ss_dssp             CC-CCCCCCCCCC-CC-C-------------CCCEEEEEE-EETTSCEEEEEECCSCCSSCEEEEECCBCSSSBCCCEEC
T ss_pred             CcccEEEeEEEeccCC-C-------------CCCEeeEEE-ECCCceEEEEECCCCcCCcCceEEEEEEEcCCCcccCCC
Confidence              11222333444333 2             333456666 33344456666543210       00000    000000


Q ss_pred             c-----cceee-eEEE--eeeEEEEeecCCCCCCcccc-cccceeEEecCCceEEEEEEEeeecCCeeEEEECCE-----
Q psy15127        214 S-----RRTLG-WLRV--RPLYWNVARPRANLNPRYIG-RKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGS-----  279 (633)
Q Consensus       214 ~-----~~~~~-~~~~--~g~y~C~a~~~~~~~p~~~~-~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~-----  279 (633)
                      .     ...+. .+..  .-.|++.|.|..+....... ..........++..+.+.+.........+.|.....     
T Consensus       152 ~~~~~~~c~~~~~l~~~~~Y~~~v~a~n~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~v~l~W~~p~~~~~~~  231 (589)
T 3l5h_A          152 KRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVII  231 (589)
T ss_dssp             BTTBSSCCBCCSCCCSSSCEEECEEEEESSCCBCCCCEEECGGGSEECCCCCSCEEECTTTCTTCEEEECCCCGGGGTSC
T ss_pred             CCCCcEEEEECCCCchheeEEEEEEEEeCCCCcccccEEEccccEEEcCCCceEEEEecCCCCCeEEEEeCCCCCCCeee
Confidence            0     00000 0000  11356788887775311100 000001111122222222111111112333332110     


Q ss_pred             ---EEEec--cCCccceEE----EccCceEEEcCCCCCCCeEEEEEEEeCCceeEE---EEEEEEEecccCC---C----
Q psy15127        280 ---QVLMF--PGNAYGHLH----VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV---RAFLQVREFCVLP---K----  340 (633)
Q Consensus       280 ---~~~~~--~~~~~~~~~----~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~---~~~l~v~~~~~~p---~----  340 (633)
                         .+...  .........    ......+.+.++.......++..|.|..|....   +..+.+...+..|   +    
T Consensus       232 ~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~~~T~~~~P~~~p~~~~  311 (589)
T 3l5h_A          232 LKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWY  311 (589)
T ss_dssp             EEEEEEEEETTCSCCBCCCTTSSCSCCSEEEECSCCSSCCEEEEEEEEESSSCSCCCCCCCCBCCCCCCCCCCSCCCEEE
T ss_pred             EEEEEEECCCCCCCcEEEccccCcCceeEEEECCCCCCCEEEEEEEEEeCCCCCccCCCCCccccccCccCCCCCCcEEE
Confidence               00000  000000000    012246889999888888889999988764311   2222222111111   1    


Q ss_pred             ------------ceEEeCCCccc-cCCCCCce-------------------EEecccccCCEEEEEEEEcCCcceeEEEE
Q psy15127        341 ------------GTFTLGQPNLA-TGNSDLRR-------------------IACDLRETDSGLYTCTASSESGETSWSAS  388 (633)
Q Consensus       341 ------------p~~~~~~~~~~-~g~p~~~~-------------------~i~~~~~~d~g~y~c~a~n~~g~~~~~~~  388 (633)
                                  -.+.|.+.... .+.++..|                   .+..+.....|.+++.|.|..|....+. 
T Consensus       312 ~v~~~~~~~~~~v~l~W~p~~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~~~V~A~n~~G~~~~s~-  390 (589)
T 3l5h_A          312 KIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAV-  390 (589)
T ss_dssp             ECCSCSSTTSCCEEEEECCCCTTTSSSCCCEEEEEECCTTSCCCBCCCSSSCCEECCCSSCCCEEEEEEBTTBCCCCCC-
T ss_pred             EeecCcCCCcceEEEEEeeCCchhccCceeeEEEEEecCCCCceeeccCCceEEEEeCCCCEEEEEEEEeCCccCCCeE-
Confidence                        12334321110 01111111                   2223556778889999999988653321 


Q ss_pred             EEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCC----eEEEEE
Q psy15127        389 LSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTG----WVVAAH  464 (633)
Q Consensus       389 l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~----~~~~~~  464 (633)
                      +.+..           .....+.++..+..... .+++.|+|.++.      ..+.+|.|+|+..+....    |... .
T Consensus       391 ~~~~~-----------~~~~~~~p~~~l~~~~~-~~si~l~W~~p~------~~i~~Y~v~~~~~~~~~~~~~~~~~~-~  451 (589)
T 3l5h_A          391 LTIPA-----------CDFQATHPVMDLKAFPK-DNMLWVEWTTPR------ESVKKYILEWCVLSDKAPCITDWQQE-D  451 (589)
T ss_dssp             CCCCC-----------TTCCCCSCCCSCEEEEC-SSSEEEECCCCS------SCCSCBCCEEEEECSSSCCCEEECCB-C
T ss_pred             EEeec-----------ccccCCCCcceEEEEEC-CCeEEEEEECCC------CCccEEEEEEEECCCCCCCccCcEEe-e
Confidence            11111           11112344455655544 689999999987      268889999998764321    3211 1


Q ss_pred             eeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEE
Q psy15127        465 RITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVR  544 (633)
Q Consensus       465 ~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~  544 (633)
                      ......+.+.+|.|++.|.|+|+|.|..|.|.++..  .+.|.+.+|..++.+                .+..++.+++.
T Consensus       452 ~~~~~~~~~~~L~p~t~Y~~~V~A~~~~g~g~~~~~--~~~t~~~~P~~pp~l----------------~~~~~~~~sv~  513 (589)
T 3l5h_A          452 GTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESI--KAYLKQAPPSKGPTV----------------RTKKVGKNEAV  513 (589)
T ss_dssp             SSCCEEECCSCCCSSSEEEEEECBEETTEECCCEEE--EEESSCCCCSSCCCC----------------CEECCCSSCBE
T ss_pred             CCcceEEehhccccCcEEEEEEEEEeCCcccCCEEE--EEEeccCCCCCCCeE----------------EEeecccceEE
Confidence            112345667999999999999999999999987533  366777788887776                78888999999


Q ss_pred             EEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccc
Q psy15127        545 ITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFF  624 (633)
Q Consensus       545 v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n  624 (633)
                      |+|++|      +....+|.|++| .|+|+..+...       |      .+...+..++++|.+|+|++.|.|+|+|.|
T Consensus       514 l~W~~~------~~~~~~g~i~~Y-~v~~~~~~~~~-------~------~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~n  573 (589)
T 3l5h_A          514 LEWDQL------PVDVQNGFIRNY-TIFYRTIIGNE-------T------AVNVDSSHTEYTLSSLTSDTLYMVRMAAYT  573 (589)
T ss_dssp             EBCCCC------CHHHHCSCEEEE-EECCBCSSCCC-------C------CEEECTTCCBCCBCSCCSSCCEECCEEEEE
T ss_pred             EEecCC------CHHHcCccceeE-EEEEEeCCCCe-------E------EEEeCCcccEEEecCCCCCCEEEEEEEEEe
Confidence            999942      224678999999 99998766543       2      223456789999999999999999999999


Q ss_pred             cccccccCC
Q psy15127        625 KTVEGARLD  633 (633)
Q Consensus       625 ~~g~g~~s~  633 (633)
                      .+| |++|+
T Consensus       574 ~~G-~~~S~  581 (589)
T 3l5h_A          574 DEG-GKDGP  581 (589)
T ss_dssp             TTE-EEECC
T ss_pred             CCC-CCCCC
Confidence            999 88774

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.92  E-value=2.8e-23  Score=202.63  Aligned_cols=215  Identities=20%  Similarity=0.265  Sum_probs=165.3

Q ss_pred             CCCCccccccceeeEEEEecccCCCCCceEEe---eCceEEEcCCCC--CCeEEEEEEe------------cCcCCeeee
Q psy15127         14 SSPRAEIEPATRTNRVSISGDPGFDSRRSRSI---FGSVLGARGALS--DDQWKLIAKE------------ALIKPFPIS   76 (633)
Q Consensus        14 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~--~G~Y~C~a~~------------v~~~p~~~~   76 (633)
                      +.|.+.|+|       ..+|.+...+.++++.   .++.|.|.+++.  +|.|+|.|.|            +..+|.+..
T Consensus        31 g~p~~~v~W-------~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~  103 (284)
T 2rik_A           31 GTAPIKITW-------AKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIK  103 (284)
T ss_dssp             SSSCCEEEE-------EETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEE
T ss_pred             cCCCCEEEE-------EECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEECCceEEEEEEEEccCCCcccc
Confidence            345556663       3344444444454443   236799999998  9999999988            556777665


Q ss_pred             CCC-ceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEE----cccceEEEccCCCCCCeEEEEEEEeCCceEEE
Q psy15127         77 EPS-DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKI----LDDRSLQIENVGPQDEGLYICDVENLVGSISL  151 (633)
Q Consensus        77 ~~~-~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~  151 (633)
                      .+. ...+.+|+.+.|.|.+.+.|.+.+.|++++..+.......    .....|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus       104 ~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  183 (284)
T 2rik_A          104 KLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS  183 (284)
T ss_dssp             CCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             cCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeE
Confidence            544 4568999999999999999999999999999886543221    12467999999999999999999999999999


Q ss_pred             EEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEecc--ceeeeEEE----ee
Q psy15127        152 RASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR--RTLGWLRV----RP  225 (633)
Q Consensus       152 ~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~g  225 (633)
                      .+.|.|..+ |.+...+....+.+|+.+.|.|. ..|.|.+.+.|++++..+.......+....  ..+.+..+    .|
T Consensus       184 ~~~l~V~~~-p~~~~~~~~~~~~~g~~v~l~C~-~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G  261 (284)
T 2rik_A          184 STSLKVKEP-PVFRKKPHPVETLKGADVHLECE-LQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIG  261 (284)
T ss_dssp             EEEEEEECC-CBCCSCCCCEEECTTCCEEEEEE-CBSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             EEEEEEecC-CcceeCCCcceecCCCeEEEEEE-EEecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCE
Confidence            999999988 88888888888999999999999 688999999999999998766543332222  12222222    48


Q ss_pred             eEEEEeecCCCC
Q psy15127        226 LYWNVARPRANL  237 (633)
Q Consensus       226 ~y~C~a~~~~~~  237 (633)
                      .|+|.|.|..+.
T Consensus       262 ~Y~C~a~N~~G~  273 (284)
T 2rik_A          262 EYQCKASNDVGS  273 (284)
T ss_dssp             EEEEEEEETTEE
T ss_pred             EEEEEEEeCCCc
Confidence            999999998774

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.92  E-value=2.3e-24  Score=213.81  Aligned_cols=254  Identities=17%  Similarity=0.128  Sum_probs=161.1

Q ss_pred             cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCC-
Q psy15127         68 ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLV-  146 (633)
Q Consensus        68 v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~-  146 (633)
                      +..+|.|...|. ..+.+|+.++|.|.+.+. .+.+.|+|+|..+..........+.|.|.+++.+|+|.|+|.|.+.. 
T Consensus        21 ~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~   98 (316)
T 3vh8_G           21 GQDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHS   98 (316)
T ss_dssp             ---CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHHHCCBSSCEEECSCCGGGCEEEEEEEBCSSS
T ss_pred             CCCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeecCCcceEEEEECCCCcccCeEEEEEEEcCCC
Confidence            567899988887 568899999999999877 67899999998765422222245789999999999999999998632 


Q ss_pred             ----ceEEEEEEEEEEee--ccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEE---eccce
Q psy15127        147 ----GSISLRASLTVHLL--RDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLD---LSRRT  217 (633)
Q Consensus       147 ----g~~s~~~~l~V~~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~---~~~~~  217 (633)
                          +..+..+.|.|...  +|.+...+... +.+|+.++|.|.+  ..+.+.+.|++++..+.........   .....
T Consensus        99 ~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~--~~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~  175 (316)
T 3vh8_G           99 PTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWS--DIMFEHFFLHKEGISKDPSRLVGQIHDGVSKAN  175 (316)
T ss_dssp             SSSBCCCCCCEEEEEECSSCCCEEEEESCSE-EETTCCEEEEEEE--SSCCSEEEEEETTCCSCCEEEECEEETTEEEEE
T ss_pred             CcceecCCCcEEEEEecCCCCCeEEecCCCc-cCCCCeEEEEEcC--CCCCcEEEEEECCCccccceeeeeecCCCceEE
Confidence                22456677777654  24444444443 8899999999994  3456799999998766422111110   01122


Q ss_pred             eeeEE----EeeeEEEEeecCCCC------CCccc--cc---cccee-----EEecCCceEEEEEEEeeecCCeeEEEEC
Q psy15127        218 LGWLR----VRPLYWNVARPRANL------NPRYI--GR---KMASL-----LIWNHPRVNRLSCFAEGSPLPSVFWTQE  277 (633)
Q Consensus       218 ~~~~~----~~g~y~C~a~~~~~~------~p~~~--~~---~~~~~-----~~~~~g~~~~l~C~~~g~p~~~v~W~~~  277 (633)
                      +.+..    ..|.|+|.|.|..+.      ...+.  ..   .....     ..+.+|+.++|.|.+. .|.+.+.|+++
T Consensus       176 L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~-~~~~~~~W~k~  254 (316)
T 3vh8_G          176 FSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSR-SSYDMYHLSRE  254 (316)
T ss_dssp             EEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCSCCCTTSCCEEEEEES-SCCSEEEEEET
T ss_pred             EEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCCeecCCCcEEEEEECC-CCCcEEEEEEC
Confidence            22221    248999999988653      11111  00   00111     1346789999999997 47789999999


Q ss_pred             CEEEEeccCCccceEEEc---cCceEEEcCCCCCCCeEEEEEEEeCCce-----eEEEEEEEEE
Q psy15127        278 GSQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSALSVAGS-----TTVRAFLQVR  333 (633)
Q Consensus       278 g~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-----~~~~~~l~v~  333 (633)
                      |..+....    ......   ....|.|.+++  |+|.|+|.|.|..+.     .+..+.|.|.
T Consensus       255 g~~~~~~~----~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  312 (316)
T 3vh8_G          255 GGAHERRL----PAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVT  312 (316)
T ss_dssp             TSSCCEEE----ECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC---
T ss_pred             CCcCCCce----eceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEe
Confidence            97543110    000011   12479999999  999999999997663     2444455554

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.91  E-value=9.6e-25  Score=227.54  Aligned_cols=248  Identities=15%  Similarity=0.128  Sum_probs=158.2

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCC--ccC------------------CCCCeEEcc-----cceEEE
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDD--GKM------------------PTGRAKILD-----DRSLQI  127 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~--~~i------------------~~~~~~~~~-----~~~L~i  127 (633)
                      +.+|..+.+.+|++++|.|.+.+.+  .+.+.|+|+.  ..+                  ..+++....     +.+|.|
T Consensus         4 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (444)
T 1igt_B            4 LQESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQM   83 (444)
T ss_dssp             EEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EecCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEE
Confidence            3456678899999999999998764  5689999853  221                  123444432     358999


Q ss_pred             ccCCCCCCeEEEEEEEeCCce---EEEEEEEEEEee---ccccccCCCceEEecCCcEEEEEeCCCCCCCC-eEEEEECC
Q psy15127        128 ENVGPQDEGLYICDVENLVGS---ISLRASLTVHLL---RDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNG  200 (633)
Q Consensus       128 ~~v~~~d~G~Y~C~~~n~~g~---~s~~~~l~V~~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~~  200 (633)
                      .+++.+|+|.|+|.+.+..+.   ....+.|.|...   +|.+...+....+.+|+.+.|.|.+....|.+ .+.|++++
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~  163 (444)
T 1igt_B           84 SRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGS  163 (444)
T ss_dssp             CSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             CCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCC
Confidence            999999999999999987543   223457777631   13333222222357899999999954445776 99999988


Q ss_pred             EEeccCCCeeEEec-----cceeeeEEE---eeeEEEEeecCCCCCCc---cc------------------cccccee--
Q psy15127        201 QFIDLESSKSLDLS-----RRTLGWLRV---RPLYWNVARPRANLNPR---YI------------------GRKMASL--  249 (633)
Q Consensus       201 ~~~~~~~~~~~~~~-----~~~~~~~~~---~g~y~C~a~~~~~~~p~---~~------------------~~~~~~~--  249 (633)
                      ..+...........     ...+.+...   .|.|+|.|.|..+....   +.                  .......  
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~dg~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~  243 (444)
T 1igt_B          164 LSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFI  243 (444)
T ss_dssp             BCTTEEECCCEEETTEEEEEEEEEECSTTTTTSCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEE
T ss_pred             CCCCeEecCccccCCcEEEEEEEEEchhhcCCCeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEe
Confidence            75321100000000     011111111   18999999998764210   00                  0000111  


Q ss_pred             -----EE-ecCCceEEEEEEEeeec---C-CeeEEEECCEEEEeccCCccceEEE-----ccCceEEEcCCCCCCCeEEE
Q psy15127        250 -----LI-WNHPRVNRLSCFAEGSP---L-PSVFWTQEGSQVLMFPGNAYGHLHV-----TQEGTLRIQGVQKEDAGFFV  314 (633)
Q Consensus       250 -----~~-~~~g~~~~l~C~~~g~p---~-~~v~W~~~g~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~  314 (633)
                           .. +..|++++|.|.+.|.+   + +.+.|+++|..+.....  ......     ...+.|.|.++..+|+|.|+
T Consensus       244 ~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~--~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~  321 (444)
T 1igt_B          244 FPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQT--QTHREDYNSTLRVVSALPIQHQDWMSGKEFK  321 (444)
T ss_dssp             ECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTC--BCCEEECSSSEEEEEEEECCHHHHHTTCEEE
T ss_pred             cCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCccc--ccceeCCCCcEEEEEEEEEcHHHhccCCcEE
Confidence                 11 36789999999999984   3 59999999987642111  001111     12347999999999999999


Q ss_pred             EEEEeCCcee
Q psy15127        315 CSALSVAGST  324 (633)
Q Consensus       315 C~a~n~~g~~  324 (633)
                      |.|.|..|..
T Consensus       322 C~a~n~~~~~  331 (444)
T 1igt_B          322 CKVNNKDLPA  331 (444)
T ss_dssp             EEEECTTCSS
T ss_pred             EEEEcCCCCC
Confidence            9999998866

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.91  E-value=3.4e-24  Score=224.24  Aligned_cols=277  Identities=14%  Similarity=0.170  Sum_probs=173.3

Q ss_pred             CceEEeeC-----ceEEEcCCCC--CCeEEEEEEecC------------------------c----CCeeeeCCCceEEE
Q psy15127         40 RRSRSIFG-----SVLGARGALS--DDQWKLIAKEAL------------------------I----KPFPISEPSDATVL   84 (633)
Q Consensus        40 ~~~~~~~~-----~~L~i~~v~~--~G~Y~C~a~~v~------------------------~----~p~~~~~~~~~~~~   84 (633)
                      .|+.+..+     .+|.|.+++.  +|.|+|.|.+..                        .    +|.+...+....+.
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~  145 (457)
T 1hzh_H           66 DRVTFTADTSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKST  145 (457)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCC
T ss_pred             CceEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCcccccc
Confidence            46666432     4799999998  999999996521                        1    34443333333467


Q ss_pred             cCCeEEEEEEEecc-CC-CeEEEEeCCccCCCCC--eEEcc------cceEEEccCCCCCCeEEEEEEEeCCceEEEEEE
Q psy15127         85 SGSVVEFVCRVGGD-PL-PTILWRRDDGKMPTGR--AKILD------DRSLQIENVGPQDEGLYICDVENLVGSISLRAS  154 (633)
Q Consensus        85 ~G~~~~L~C~~~~~-p~-p~i~W~~~~~~i~~~~--~~~~~------~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~  154 (633)
                      +|+.++|.|.+.+. |. +.|+|+|++..+....  .....      ...|.|.+++.+| |.|+|.|.|..+.......
T Consensus       146 ~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~  224 (457)
T 1hzh_H          146 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKK  224 (457)
T ss_dssp             TTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEE
T ss_pred             CCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEE
Confidence            89999999999886 64 7899999997653111  11111      2379999999999 9999999998776555554


Q ss_pred             EEEEee----------------cccc-ccCCCceE-EecCCcEEEEEeCCCCCCC----CeEEEEECCEEeccCCCe-eE
Q psy15127        155 LTVHLL----------------RDDF-RAEPKDTR-VASGETALLECGPPKGQPE----PTLHWKKNGQFIDLESSK-SL  211 (633)
Q Consensus       155 l~V~~~----------------~p~~-~~~~~~~~-~~~g~~~~l~C~~~~~~p~----~~i~W~~~~~~~~~~~~~-~~  211 (633)
                      |.+...                +|.+ ...|.... +.+|+++.|.|.+ .|.|+    ..|.|++++..+...... ..
T Consensus       225 v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~-~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~  303 (457)
T 1hzh_H          225 AEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVV-VDVSHEDPEVKFNWYVDGVEVHNAKTKPRE  303 (457)
T ss_dssp             CCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEE-ECCCTTCCCCEEEEEETTEEECCCEEEEEE
T ss_pred             ecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEE-EcccCCCCceEEEEEeCCccccccccccce
Confidence            443321                1332 22333222 5679999999995 56543    299999999887533211 11


Q ss_pred             EeccceeeeEEE----------eeeEEEEeecCCCCCCcc-cc------cccceeEE-------ecCCceEEEEEEEeee
Q psy15127        212 DLSRRTLGWLRV----------RPLYWNVARPRANLNPRY-IG------RKMASLLI-------WNHPRVNRLSCFAEGS  267 (633)
Q Consensus       212 ~~~~~~~~~~~~----------~g~y~C~a~~~~~~~p~~-~~------~~~~~~~~-------~~~g~~~~l~C~~~g~  267 (633)
                      ...++.+.+...          .|.|+|.|.|.....+.. ..      ...+...+       +..|+ ++|.|.+.|.
T Consensus       304 ~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~  382 (457)
T 1hzh_H          304 EQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGF  382 (457)
T ss_dssp             ECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEE
T ss_pred             ecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECCCccccCCCc-EEEEEEEEeE
Confidence            222233322211          589999999765432211 00      01111111       12344 9999999997


Q ss_pred             cCC--eeEEEECCEEEEeccCCccceEEEccCc------eEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127        268 PLP--SVFWTQEGSQVLMFPGNAYGHLHVTQEG------TLRIQGVQKEDAGFFVCSALSVAG  322 (633)
Q Consensus       268 p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~G~Y~C~a~n~~g  322 (633)
                      +++  .+.|+++|..+....   ........++      .|.|.....+|.|.|+|.|.|...
T Consensus       383 ~p~~~~v~W~k~g~~l~~~~---~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  442 (457)
T 1hzh_H          383 YPSDIAVEWESNGQPENNYK---TTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  442 (457)
T ss_dssp             BSSCCEEEEEETTEECCCEE---ECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             ECCCCEEEEEECCEECccee---ecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCC
Confidence            654  899999998774211   1111222333      355655555789999999999753

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.91  E-value=5.5e-24  Score=221.79  Aligned_cols=277  Identities=14%  Similarity=0.136  Sum_probs=174.1

Q ss_pred             CceEEee-----CceEEEcCCCC--CCeEEEEEEe---------------cC----cCCeeeeCCCceEEEcCCeEEEEE
Q psy15127         40 RRSRSIF-----GSVLGARGALS--DDQWKLIAKE---------------AL----IKPFPISEPSDATVLSGSVVEFVC   93 (633)
Q Consensus        40 ~~~~~~~-----~~~L~i~~v~~--~G~Y~C~a~~---------------v~----~~p~~~~~~~~~~~~~G~~~~L~C   93 (633)
                      .|+.+..     +++|.|.+++.  +|.|+|.|.+               +.    .+|.+...+....+.+|+.++|.|
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C  145 (444)
T 1igt_B           66 GRFTISRDNAKNTLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGC  145 (444)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEE
T ss_pred             CceEEEEeCCCCeEEEEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEE
Confidence            4666653     35899999998  9999999987               11    134443322233357899999999


Q ss_pred             EEecc-CCC-eEEEEeCCccCCC---CC----eEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEE------
Q psy15127         94 RVGGD-PLP-TILWRRDDGKMPT---GR----AKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH------  158 (633)
Q Consensus        94 ~~~~~-p~p-~i~W~~~~~~i~~---~~----~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~------  158 (633)
                      .+.|. |.| .|+|+|++..+..   ..    ......+.|.|.+++.+| |.|+|.|.|..+.......+.+.      
T Consensus       146 ~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~  224 (444)
T 1igt_B          146 LVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKP  224 (444)
T ss_dssp             EEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCC
T ss_pred             EEcceeCCCcEEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCccc
Confidence            99875 776 9999999876421   00    111123579999999999 99999999998875544444331      


Q ss_pred             ---------e--ecccc-ccCCCceE-EecCCcEEEEEeCCCCC---C-CCeEEEEECCEEeccCCCee-EEecc-----
Q psy15127        159 ---------L--LRDDF-RAEPKDTR-VASGETALLECGPPKGQ---P-EPTLHWKKNGQFIDLESSKS-LDLSR-----  215 (633)
Q Consensus       159 ---------~--~~p~~-~~~~~~~~-~~~g~~~~l~C~~~~~~---p-~~~i~W~~~~~~~~~~~~~~-~~~~~-----  215 (633)
                               .  .+|.+ ..+|.... +.+|+++.|.|.+ .|.   | .+.|.|++++..+....... ....+     
T Consensus       225 ~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~-~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~  303 (444)
T 1igt_B          225 CPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVV-VDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRV  303 (444)
T ss_dssp             CCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEE-EEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEE
T ss_pred             CCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEE-eecccCCCCeEEEEEECCccccCcccccceeCCCCcEEE
Confidence                     0  02443 33333333 5789999999995 465   3 46999999998875432221 11111     


Q ss_pred             -ceeeeEE----EeeeEEEEeecCCCCCCcc-cc------cccceeEEec------CCceEEEEEEEeee-cCC-eeEEE
Q psy15127        216 -RTLGWLR----VRPLYWNVARPRANLNPRY-IG------RKMASLLIWN------HPRVNRLSCFAEGS-PLP-SVFWT  275 (633)
Q Consensus       216 -~~~~~~~----~~g~y~C~a~~~~~~~p~~-~~------~~~~~~~~~~------~g~~~~l~C~~~g~-p~~-~v~W~  275 (633)
                       ..|.+..    ..|.|+|.|.|..+..+.. ..      ...+...+..      .+..++|.|.+.|. |++ .+.|+
T Consensus       304 ~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~  383 (444)
T 1igt_B          304 VSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWT  383 (444)
T ss_dssp             EEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCChHHccCCeEEEEEEEEeeeCCCCEEEEE
Confidence             1222211    1379999999987754211 00      0111111111      23459999999995 555 89999


Q ss_pred             ECCEEEEeccCCccceEEEccCc------eEEEcCCCCCCCeEEEEEEEeCC
Q psy15127        276 QEGSQVLMFPGNAYGHLHVTQEG------TLRIQGVQKEDAGFFVCSALSVA  321 (633)
Q Consensus       276 ~~g~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~G~Y~C~a~n~~  321 (633)
                      ++|..+...   .........++      .|.|.....+|.|.|+|.|.|..
T Consensus       384 k~g~~l~~~---~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~  432 (444)
T 1igt_B          384 NNGKTELNY---KNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG  432 (444)
T ss_dssp             ETTEECSSE---EECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             ECCEEcccc---ccccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCC
Confidence            999876311   11111122333      35666666677999999999975

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.91  E-value=7.6e-23  Score=190.11  Aligned_cols=188  Identities=30%  Similarity=0.519  Sum_probs=139.9

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEc-----ccceEEEccC-CCCCCeEEEEEE
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL-----DDRSLQIENV-GPQDEGLYICDV  142 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~-----~~~~L~i~~v-~~~d~G~Y~C~~  142 (633)
                      ..+|.|...|.+..+.+|+.+.|.|.+.|.|.+.|.|+|++..+..++....     ....|.|.++ +.+|+|.|+|.|
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a   83 (212)
T 2yd6_A            4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA   83 (212)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEE
T ss_pred             CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEE
Confidence            4678999999999999999999999999999999999999999877654443     2356999999 599999999999


Q ss_pred             EeCCceEEEEEEEEEEeec------cccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccc
Q psy15127        143 ENLVGSISLRASLTVHLLR------DDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRR  216 (633)
Q Consensus       143 ~n~~g~~s~~~~l~V~~~~------p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~  216 (633)
                      .|..|..+..+.|.|....      |.+...+....+.+|+.+.|.|. ..|.|.+.+.|+++|..+......       
T Consensus        84 ~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~-~~g~p~p~v~W~~~g~~l~~~~~~-------  155 (212)
T 2yd6_A           84 SNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCA-ASGNPDPEITWFKDFLPVDTSNNN-------  155 (212)
T ss_dssp             EETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEE-EECSSCCEEEEEETTEEC-------------
T ss_pred             EcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEE-ecCCCCCeEEEEECCccccCcCCC-------
Confidence            9999998888999998642      33444555566667777777777 456666677777766654321100       


Q ss_pred             eeeeEEEeeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEcc
Q psy15127        217 TLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ  296 (633)
Q Consensus       217 ~~~~~~~~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~  296 (633)
                                                                                            ..........
T Consensus       156 ----------------------------------------------------------------------~~~~~~~~~~  165 (212)
T 2yd6_A          156 ----------------------------------------------------------------------GRIKQLRSES  165 (212)
T ss_dssp             ----------------------------------------------------------------------CCEEEEEETT
T ss_pred             ----------------------------------------------------------------------ceEEEEecCC
Confidence                                                                                  0000011112


Q ss_pred             CceEEEcCCCCCCCeEEEEEEEeCCceeE-EEEEEEEEe
Q psy15127        297 EGTLRIQGVQKEDAGFFVCSALSVAGSTT-VRAFLQVRE  334 (633)
Q Consensus       297 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~  334 (633)
                      .+.|.|.++..+|.|.|+|.|.|..|... ..+.|.|..
T Consensus       166 ~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~  204 (212)
T 2yd6_A          166 IGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRG  204 (212)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             eEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEe
Confidence            35899999999999999999999999874 446666653

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.91  E-value=3.8e-24  Score=223.82  Aligned_cols=247  Identities=15%  Similarity=0.173  Sum_probs=153.2

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeC--CccC------------------CCCCeEEcc-----cceEEE
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRD--DGKM------------------PTGRAKILD-----DRSLQI  127 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~--~~~i------------------~~~~~~~~~-----~~~L~i  127 (633)
                      +.+|..+.+.+|++++|.|.+.+.+  .+.+.|+|+  +...                  ..+++....     ...|.|
T Consensus         4 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (457)
T 1hzh_H            4 LVQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMEL   83 (457)
T ss_dssp             EEECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             EecCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEE
Confidence            3456678899999999999998775  678999984  2211                  023444432     247999


Q ss_pred             ccCCCCCCeEEEEEEEeCCc------------eEEEEEEEEEEee---ccccccCCCceEEecCCcEEEEEeCCCCCCC-
Q psy15127        128 ENVGPQDEGLYICDVENLVG------------SISLRASLTVHLL---RDDFRAEPKDTRVASGETALLECGPPKGQPE-  191 (633)
Q Consensus       128 ~~v~~~d~G~Y~C~~~n~~g------------~~s~~~~l~V~~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-  191 (633)
                      .+++.+|+|.|+|.+.|..|            .....+.|.|...   +|.+...+....+.+|+.+.|.|.+....|. 
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~  163 (457)
T 1hzh_H           84 RSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP  163 (457)
T ss_dssp             CSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCC
T ss_pred             CCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCCC
Confidence            99999999999999998764            2234556777652   2444333333446789999999996544475 


Q ss_pred             CeEEEEECCEEeccCCCeeEEeccc------eeeeEEEe---eeEEEEeecCCCCCCc---cc-----------------
Q psy15127        192 PTLHWKKNGQFIDLESSKSLDLSRR------TLGWLRVR---PLYWNVARPRANLNPR---YI-----------------  242 (633)
Q Consensus       192 ~~i~W~~~~~~~~~~~~~~~~~~~~------~~~~~~~~---g~y~C~a~~~~~~~p~---~~-----------------  242 (633)
                      +.|.|++++..+.............      .+.+....   |.|+|.|.|..+....   +.                 
T Consensus       164 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~dG~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  243 (457)
T 1hzh_H          164 VTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPE  243 (457)
T ss_dssp             CEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGTSCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCC
T ss_pred             eEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCCceEEEEEEeCCCCcceeEEecccCCCcccccCCCCCcc
Confidence            7999999985432110001111111      12221111   8999999987653110   00                 


Q ss_pred             cccccee-E-------EecCCceEEEEEEEeeecCC----eeEEEECCEEEEeccCCccceEEEccCceEEEcC---CCC
Q psy15127        243 GRKMASL-L-------IWNHPRVNRLSCFAEGSPLP----SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQG---VQK  307 (633)
Q Consensus       243 ~~~~~~~-~-------~~~~g~~~~l~C~~~g~p~~----~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~---~~~  307 (633)
                      ....... +       .+..|+.++|.|.+.|.|++    .+.|++++..+...   .........++.|.+..   +..
T Consensus       244 ~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~---~~~~~~~~~~g~~~~~~~l~i~~  320 (457)
T 1hzh_H          244 LLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNA---KTKPREEQYNSTYRVVSVLTVLH  320 (457)
T ss_dssp             CSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCC---EEEEEEECTTSCEEEEEEECCCH
T ss_pred             ccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCcccccc---ccccceecCCCcEEEEEEEEECH
Confidence            0000111 1       13468999999999998653    99999999876411   11111223344554442   335


Q ss_pred             CC---CeEEEEEEEeCCcee
Q psy15127        308 ED---AGFFVCSALSVAGST  324 (633)
Q Consensus       308 ~d---~G~Y~C~a~n~~g~~  324 (633)
                      .|   +|.|+|.|.|..+..
T Consensus       321 ~d~~d~G~Y~C~a~n~~~~~  340 (457)
T 1hzh_H          321 QDWLNGKEYKCKVSNKALPA  340 (457)
T ss_dssp             HHHHHTCCEEEEEECTTSSS
T ss_pred             HHccCCCcEEEEEeCCCCCC
Confidence            55   999999999876544

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.91  E-value=5e-23  Score=204.53  Aligned_cols=261  Identities=13%  Similarity=0.124  Sum_probs=172.3

Q ss_pred             eEEecCCceEEEEEEEeeec-CCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEE
Q psy15127        249 LLIWNHPRVNRLSCFAEGSP-LPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  327 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g~p-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  327 (633)
                      .+....|++++|.|.+.+.+ .+.|.|++++..+..    ...+. ...++.|.|.++...|+|.|+|.+   .|.....
T Consensus        15 ~v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~----~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~---~g~~~~~   86 (325)
T 1n26_A           15 VLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGS----HPSRW-AGMGRRLLLRSVQLHDSGNYSCYR---AGRPAGT   86 (325)
T ss_dssp             EEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSC----CCEEE-EEESSEEEECSCCGGGCEEEEEES---SSSCSCE
T ss_pred             cEECCCCCcEEEEeCCCCCCCCceEEEEECCccCCc----ccccc-ccccceEEecccchhhCeEeEEEe---CCEEeee
Confidence            34456899999999998765 679999998764310    11111 223467778777777777777762   3433333


Q ss_pred             EEEEEEecccCCCceEEeCCCccccCCCCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCC
Q psy15127        328 AFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSG  407 (633)
Q Consensus       328 ~~l~v~~~~~~p~p~~~~~~~~~~~g~p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~  407 (633)
                                                                                 +.|.|..+|.           
T Consensus        87 -----------------------------------------------------------~~L~V~~pP~-----------   96 (325)
T 1n26_A           87 -----------------------------------------------------------VHLLVDVPPE-----------   96 (325)
T ss_dssp             -----------------------------------------------------------EEEEECCCCC-----------
T ss_pred             -----------------------------------------------------------EEEEeccCCC-----------
Confidence                                                                       4444444332           


Q ss_pred             CCCCCCCCcEEEE-eeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEec-C-CCCeEEEEEe---eeeceEEEecCC-CCC
Q psy15127        408 LFPGPPAAPVILN-TTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSD-L-QTGWVVAAHR---ITSTSITVSDLK-PDT  480 (633)
Q Consensus       408 ~~p~~p~~~~~~~-~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~-~-~~~~~~~~~~---~~~~~~~i~~L~-p~~  480 (633)
                          .|. +.+.. .....+.+.|.++.+.    +....|.|.|+... . ...|......   .....++|..+. +++
T Consensus        97 ----~P~-l~c~~~~~~~~~~c~W~~~~~~----~~~~~y~l~~~~~~~~~~~~~~~~c~~~~~~~~~~c~i~~~~~~~~  167 (325)
T 1n26_A           97 ----EPQ-LSCFRKSPLSNVVCEWGPRSTP----SLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSS  167 (325)
T ss_dssp             ----CCC-CEEEBSSTTSCEEEEECCSSCC----CTTCEEEEEEEEESSSSCEEEEEEEEEETTTTEEEEEECCCTTCCC
T ss_pred             ----CCc-eeEEeecCCCcEEEEECCCCCC----CCCceEEEEEEEccCCCCCcccccCCCCCCCCCEEEEECCCcccCc
Confidence                344 44442 2356899999988743    24578999988652 1 1233222221   234577888876 889


Q ss_pred             eEEEEEEEEeccccCCCCCCCCceeec-CCCCCCCcchHHHHHHHhCCceEEeeeeeecc--cceEEEEEEEecCCCccc
Q psy15127        481 SYMFIVRAENSHGLGIPSPVSPITRTL-GLNSLVPQHLLDEARARLGTKVVNLRELIPTA--STAVRITWEVSWGSVPQH  557 (633)
Q Consensus       481 ~Y~~~v~a~n~~G~g~~s~~~~~~~t~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~si~v~W~~p~~~~p~~  557 (633)
                      .|.|+|.|.|..|.+.. ... .+.+. ...|.+|.++                .+..++  .+++.|+|++|      .
T Consensus       168 ~Y~f~v~A~N~~G~~~s-~~~-~~~~~~~v~P~pP~~l----------------~v~~~~~~~~sv~lsW~~p------~  223 (325)
T 1n26_A          168 FYIVSMCVASSVGSKFS-KTQ-TFQGCGILQPDPPANI----------------TVTAVARNPRWLSVTWQDP------H  223 (325)
T ss_dssp             EEEEEEEEEETTEEEEC-CCE-EEETTTCBCCCCCEEE----------------EEEECTTCTTCEEEEEECC------T
T ss_pred             EEEEEEEEEcCCCCccc-CcE-EEeeccccCCCCCcce----------------EEEEecCCCCEEEEEECCC------C
Confidence            99999999999999742 222 12222 2335555444                566654  36999999954      2


Q ss_pred             ccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        558 LLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       558 ~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      ..+.++.+++| .|+|+..+...       |+...     .....++++|.+|+|++.|.|+|+|.|..|.|++|+
T Consensus       224 ~~~~~~~~~~Y-~V~yr~~~~~~-------W~~~~-----~~~~~~~~~l~~L~p~t~Y~~rVrA~n~~g~G~~S~  286 (325)
T 1n26_A          224 SWNSSFYRLRF-ELRYRAERSKT-------FTTWM-----VKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSE  286 (325)
T ss_dssp             TCCCSSSCEEE-EEEEEETTCSC-------CEEEE-----CGGGCSEEEESSCCTTCCEEEEEEEEETTTBSCCCC
T ss_pred             ccCCCcEeEEE-EEEEEeCCCCC-------CEEEc-----ccCCceEEEEeCCCCCCeEEEEEEEecCCCCCCCcC
Confidence            22356778999 99999886543       76432     234568899999999999999999999999999985

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.91  E-value=1.1e-22  Score=189.12  Aligned_cols=184  Identities=31%  Similarity=0.541  Sum_probs=139.4

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCC--CCCeEEcc--c--ceEEEccCCC-CCCeEEEEEE
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP--TGRAKILD--D--RSLQIENVGP-QDEGLYICDV  142 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~--~~~~~~~~--~--~~L~i~~v~~-~d~G~Y~C~~  142 (633)
                      .+|.|...|.+..+.+|+.++|.|.+.+.|.+.+.|++++..+.  ..+.....  +  ..|.|.+++. +|+|.|+|.+
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~   84 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVA   84 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEE
Confidence            57999999999999999999999999999999999999999885  33443322  2  5899999999 9999999999


Q ss_pred             EeCCce-EEEEEEEEEEeec------cccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEecc
Q psy15127        143 ENLVGS-ISLRASLTVHLLR------DDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR  215 (633)
Q Consensus       143 ~n~~g~-~s~~~~l~V~~~~------p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~  215 (633)
                      .|..|. .+..+.|.|...+      |.+...+....+.+|+.+.|.|. ..+.|.+.+.|++++..+....        
T Consensus        85 ~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~-~~g~p~p~i~W~~~~~~~~~~~--------  155 (212)
T 2yd1_A           85 ENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCK-AIGNPTPNIYWIKNQTKVDMSN--------  155 (212)
T ss_dssp             ECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCE-EECSSCCEEEEEETTEECCTTS--------
T ss_pred             EeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEE-eccCCCCeEEEEECCeEcccCC--------
Confidence            999988 7888899998752      34444555556666777777776 3555666666666655443210        


Q ss_pred             ceeeeEEEeeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc
Q psy15127        216 RTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT  295 (633)
Q Consensus       216 ~~~~~~~~~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~  295 (633)
                                                                                                .+.. .
T Consensus       156 --------------------------------------------------------------------------~~~~-~  160 (212)
T 2yd1_A          156 --------------------------------------------------------------------------PRYS-L  160 (212)
T ss_dssp             --------------------------------------------------------------------------TTEE-E
T ss_pred             --------------------------------------------------------------------------CeEE-c
Confidence                                                                                      1111 1


Q ss_pred             cCceEEEcCCCCCCCeEEEEEEEeCCceeEEE-EEEEEEeccc
Q psy15127        296 QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR-AFLQVREFCV  337 (633)
Q Consensus       296 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~~~  337 (633)
                      .++.|.|.++..+|.|.|+|.|.|..|..... +.|.|.....
T Consensus       161 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~~  203 (212)
T 2yd1_A          161 KDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRV  203 (212)
T ss_dssp             ETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             cCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEeccc
Confidence            34589999999999999999999999998765 7888886543

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.91  E-value=1.2e-22  Score=185.88  Aligned_cols=181  Identities=24%  Similarity=0.348  Sum_probs=133.6

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC---CeEE-cc--cceEEEccCCCCCCeEEEEEE
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKI-LD--DRSLQIENVGPQDEGLYICDV  142 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~---~~~~-~~--~~~L~i~~v~~~d~G~Y~C~~  142 (633)
                      ..+|.|...+....+.+|+.++|.|.+.+.|.+.+.|+|++..+...   +... ..  ...|.|.+++.+|+|.|+|.+
T Consensus         3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   82 (194)
T 2a38_A            3 TQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKA   82 (194)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEE
Confidence            35788999999999999999999999999999999999999988653   2222 22  348999999999999999999


Q ss_pred             EeCCceEEEEEEEEEEe--eccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeee
Q psy15127        143 ENLVGSISLRASLTVHL--LRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGW  220 (633)
Q Consensus       143 ~n~~g~~s~~~~l~V~~--~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~  220 (633)
                      .|..+.....+.|.|..  .+|.+...+....+.+|+.+.|.|. ..+.|.+.+.|+++|..+...              
T Consensus        83 ~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~-~~g~p~~~v~W~~~~~~~~~~--------------  147 (194)
T 2a38_A           83 TNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVR-VTGIPTPVVKFYRDGAEIQSS--------------  147 (194)
T ss_dssp             EETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEE-EEEESCCEEEEEETTEECCCS--------------
T ss_pred             EcCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEE-EEEecCCeEEEEECCEECCCC--------------
Confidence            99999888888888874  2255555555555556666666665 244455555555554433211              


Q ss_pred             EEEeeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc---cC
Q psy15127        221 LRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT---QE  297 (633)
Q Consensus       221 ~~~~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~---~~  297 (633)
                                                                                           .+....   ..
T Consensus       148 ---------------------------------------------------------------------~~~~~~~~~~~  158 (194)
T 2a38_A          148 ---------------------------------------------------------------------LDFQISQEGDL  158 (194)
T ss_dssp             ---------------------------------------------------------------------SSEEEEEETTE
T ss_pred             ---------------------------------------------------------------------CcEEEEEcCCE
Confidence                                                                                 111111   12


Q ss_pred             ceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127        298 GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR  333 (633)
Q Consensus       298 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  333 (633)
                      ..|.|.++..+|.|.|+|.|.|..|..+.++.|.|+
T Consensus       159 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  194 (194)
T 2a38_A          159 YSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ  194 (194)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence            279999999999999999999999999988888763

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.91  E-value=1.3e-22  Score=186.17  Aligned_cols=187  Identities=23%  Similarity=0.302  Sum_probs=137.2

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC--CeEEc--cc--ceEEEccCCCCCCeEEEEEEE
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG--RAKIL--DD--RSLQIENVGPQDEGLYICDVE  143 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~--~~~~~--~~--~~L~i~~v~~~d~G~Y~C~~~  143 (633)
                      .+|.|...+....+.+|+.+.|.|.+.+.|.+.+.|+|++..+...  +....  .+  ..|.|.+++.+|+|.|+|.+.
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEE
Confidence            5789999999999999999999999999999999999999988643  33222  22  289999999999999999999


Q ss_pred             eCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEE
Q psy15127        144 NLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV  223 (633)
Q Consensus       144 n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (633)
                      |..|..+..+.|.|..+ |.+..++...                                                    
T Consensus        83 n~~g~~~~~~~l~V~~~-p~~~~~~~~~----------------------------------------------------  109 (197)
T 2j8h_A           83 NQGGSVSGTASLEVEVP-AKIHLPKTLE----------------------------------------------------  109 (197)
T ss_dssp             ETTEEEEEEEEEEEEEE-EEECCSSCBT----------------------------------------------------
T ss_pred             ECCCceeEEEEEEEcCC-CcCCCCcccc----------------------------------------------------
Confidence            99998888999999876 4332211000                                                    


Q ss_pred             eeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEc
Q psy15127        224 RPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQ  303 (633)
Q Consensus       224 ~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~  303 (633)
                                            ......+..|+.+.|.|.+.|.|.+.+.|++++..+..  ............+.|.|.
T Consensus       110 ----------------------~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~~~~~~~~L~i~  165 (197)
T 2j8h_A          110 ----------------------GMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDN--NGHYQVIVTRSFTSLVFP  165 (197)
T ss_dssp             ----------------------TBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECS--SSSCEEEECSSEEEEECT
T ss_pred             ----------------------ccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeec--CCCEEEEEcCCceEEEEe
Confidence                                  00112233455666666666666677777777665531  111111111234589999


Q ss_pred             C-CCCCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127        304 G-VQKEDAGFFVCSALSVAGSTTVRAFLQVR  333 (633)
Q Consensus       304 ~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  333 (633)
                      + +..+|.|.|+|.|.|..|..+..+.|.|.
T Consensus       166 ~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          166 NGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             TCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence            9 99999999999999999999999988886

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.91  E-value=2.7e-23  Score=204.92  Aligned_cols=187  Identities=24%  Similarity=0.359  Sum_probs=146.2

Q ss_pred             ceEEEcCCC--C-CCeEEEEEEe------------cCcC-------CeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEE
Q psy15127         48 SVLGARGAL--S-DDQWKLIAKE------------ALIK-------PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILW  105 (633)
Q Consensus        48 ~~L~i~~v~--~-~G~Y~C~a~~------------v~~~-------p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W  105 (633)
                      ..|.|.+++  . +|.|+|.|.|            +..+       |.+...+....+.+|+.+.|.|.+.+.|.+.+.|
T Consensus        63 ~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W  142 (304)
T 2yd9_A           63 AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITW  142 (304)
T ss_dssp             EEEEECSCCTTTTCSEEEEEEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEE
T ss_pred             eEEEEecccccCCCeEEEEEEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEE
Confidence            469999986  3 9999999988            2222       7788888888999999999999999999999999


Q ss_pred             EeCCccCCCC----CeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEE-EEEEEE--eeccccccCCCceEEecCCc
Q psy15127        106 RRDDGKMPTG----RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLR-ASLTVH--LLRDDFRAEPKDTRVASGET  178 (633)
Q Consensus       106 ~~~~~~i~~~----~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~-~~l~V~--~~~p~~~~~~~~~~~~~g~~  178 (633)
                      +|++..+...    +.....++.|.|.+++.+|+|.|+|.|.|..|..... +.|.|.  ..+|.+...+....+.+|+.
T Consensus       143 ~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~  222 (304)
T 2yd9_A          143 FKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGN  222 (304)
T ss_dssp             EETTEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCC
T ss_pred             EECCEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCe
Confidence            9999887542    4445567799999999999999999999998875422 455553  33477777788888999999


Q ss_pred             EEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeee--EEEeeeEEEEeecCCCC
Q psy15127        179 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGW--LRVRPLYWNVARPRANL  237 (633)
Q Consensus       179 ~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~y~C~a~~~~~~  237 (633)
                      +.|.|. +.|.|.+.+.|++++..+.......  .....+.+  ....|.|+|.|.|..+.
T Consensus       223 v~l~C~-~~g~p~p~v~W~~~~~~l~~~~~~~--~~~~~L~i~~~~d~G~Y~C~a~N~~G~  280 (304)
T 2yd9_A          223 VNITCV-AVGSPMPYVKWMQGAEDLTPEDDMP--VGRNVLELTDVKDSANYTCVAMSSLGV  280 (304)
T ss_dssp             EEEEEE-EEEESCCEEEEEETTEECSCSSSCC--BSEEEEEECSCCSCEEEEEEEEETTEE
T ss_pred             EEEEEE-EeeeCCCEEEEEECCEECCCccccc--CCcEEEEEcccccCEEEEEEEEeCCCc
Confidence            999999 5889999999999999886543211  11111111  12368999999998774

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.90  E-value=3.7e-22  Score=181.99  Aligned_cols=179  Identities=22%  Similarity=0.431  Sum_probs=140.0

Q ss_pred             cCCeeeeCCCceEEEc-CCeEEEEEEEeccCC--CeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCC
Q psy15127         70 IKPFPISEPSDATVLS-GSVVEFVCRVGGDPL--PTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~-G~~~~L~C~~~~~p~--p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      .+|.|... ....+.+ |+.+.|.|.+.+.|.  +.+.|+|++..+...+... .+..|.|.+++.+|+|.|+|.+.|. 
T Consensus         2 ~~P~i~~~-~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~n~-   78 (190)
T 2wv3_A            2 NEPRIVTS-EEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-SNMEYRINKPRAEDSGEYHCVYHFV-   78 (190)
T ss_dssp             -CCEEEEC-CCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-SEEEEEESSCCGGGCEEEEEEEEET-
T ss_pred             CCCccccc-ceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-ccEEEEEecCCcccCEEEEEEEEeC-
Confidence            46777764 4555666 999999999998877  7899999999887654333 5678999999999999999999999 


Q ss_pred             ceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEE--CCEEeccCCCeeEEeccceeeeEEEe
Q psy15127        147 GSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKK--NGQFIDLESSKSLDLSRRTLGWLRVR  224 (633)
Q Consensus       147 g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (633)
                      +..+..+.|.|..+ |.+...+....+.+|+.+.|.|. ..|.|.+.+.|++  ++..+....                 
T Consensus        79 ~~~~~~~~l~V~~~-p~~~~~~~~~~~~~g~~v~l~C~-~~g~p~p~i~W~~~~~g~~~~~~~-----------------  139 (190)
T 2wv3_A           79 SAPKANATIEVKAA-PDITGHKRSENKNEGQDAMMYCK-SVGYPHPEWMWRKKENGVFEEISN-----------------  139 (190)
T ss_dssp             TEEEEEEEEEEECC-CEEEEECSEEEEETTSCEEEEEE-EECSSCCEEEEEEEETTEEEECCC-----------------
T ss_pred             CcccccEEEEEecC-CcccccCCcceeeCCCcEEEEEE-eCccCCCceEEEEcCCCceeeeec-----------------
Confidence            88899999999987 77777777777888888888888 4777777888877  555443110                 


Q ss_pred             eeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc---cCceEE
Q psy15127        225 PLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT---QEGTLR  301 (633)
Q Consensus       225 g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~---~~~~l~  301 (633)
                                                                                     ...++...   ..+.|.
T Consensus       140 ---------------------------------------------------------------~~~~~~~~~~~~~~~L~  156 (190)
T 2wv3_A          140 ---------------------------------------------------------------SSGRFFIINKENYTELN  156 (190)
T ss_dssp             ---------------------------------------------------------------TTSCEEEEECSSEEEEE
T ss_pred             ---------------------------------------------------------------CCCeEEEecCCCeeEEE
Confidence                                                                           00111111   123799


Q ss_pred             EcCCC-CCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127        302 IQGVQ-KEDAGFFVCSALSVAGSTTVRAFLQVR  333 (633)
Q Consensus       302 i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~l~v~  333 (633)
                      |.++. .+|.|.|+|.|.|..|..+.++.|.|.
T Consensus       157 i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          157 IVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             ECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            99999 799999999999999999999888875

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.90  E-value=6.7e-23  Score=200.74  Aligned_cols=223  Identities=22%  Similarity=0.292  Sum_probs=163.0

Q ss_pred             cCCCCCCCCCCccccccceeeEEEEecccCC-CCCceEEe----eCceEEEcCCCC--CCeEEEEEEe------------
Q psy15127          7 TNHAHPMSSPRAEIEPATRTNRVSISGDPGF-DSRRSRSI----FGSVLGARGALS--DDQWKLIAKE------------   67 (633)
Q Consensus         7 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~L~i~~v~~--~G~Y~C~a~~------------   67 (633)
                      +.|......|.+.|+|+..      +|.+.. ...++.+.    .+++|.|.+++.  +|.|+|.|.|            
T Consensus        22 l~C~~~~~~~~~~i~W~~~------~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l   95 (291)
T 1qz1_A           22 FLCQVAGDAKDKDISWFSP------NGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNV   95 (291)
T ss_dssp             EEEEESSCCSCCEEEEECT------TSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEE
T ss_pred             EEEEeCCCCCCcEeEEECC------CCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEEEEEE
Confidence            3444333333567775442      243333 33455443    246899999998  9999999988            


Q ss_pred             -cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCC---CCeEEcccceEEEccCCCCCCeEEEEEEE
Q psy15127         68 -ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT---GRAKILDDRSLQIENVGPQDEGLYICDVE  143 (633)
Q Consensus        68 -v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~  143 (633)
                       +..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..   .+.....++.|.|.+++.+|+|.|+|.|.
T Consensus        96 ~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  175 (291)
T 1qz1_A           96 KIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGR  175 (291)
T ss_dssp             EEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEETTCCGGGCEEEEEEEE
T ss_pred             EeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCcEEEccCccccCeEEEEEEE
Confidence             45578888888888999999999999999999999999999987743   34555667899999999999999999999


Q ss_pred             eCCce--EEEEEEEEEEeeccccccCCC--ceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCC----eeEEecc
Q psy15127        144 NLVGS--ISLRASLTVHLLRDDFRAEPK--DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS----KSLDLSR  215 (633)
Q Consensus       144 n~~g~--~s~~~~l~V~~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~----~~~~~~~  215 (633)
                      |..+.  .+..+.|.|..+ |.+...+.  ...+.+|+.+.|.|. ..|.|.+.+.|+++|..+.....    .......
T Consensus       176 n~~~~~~~~~~~~l~v~~~-p~~~~~~~~~~~~~~~g~~v~l~C~-~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~  253 (291)
T 1qz1_A          176 ILARGEINFKDIQVIVNVP-PTVQARQSIVNATANLGQSVTLVCD-ADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS  253 (291)
T ss_dssp             EGGGTEEEEEEEEEEEEEE-EEEEESCSEEEEETTSCCCEEEEEE-EEEESCCEEEEEETTEECCCC--CCSSEEECTTS
T ss_pred             ecCCCceeeEEEEEEEecC-CcccccccccccccccCceEEEEEE-EEEeCCCcEEEEECCEECcCCCCCCcceEEcCCC
Confidence            87643  456777888777 66555443  446778999999999 57899999999999998876541    1111112


Q ss_pred             ceeeeEEE----eeeEEEEeecCCCC
Q psy15127        216 RTLGWLRV----RPLYWNVARPRANL  237 (633)
Q Consensus       216 ~~~~~~~~----~g~y~C~a~~~~~~  237 (633)
                      ..+.+..+    .|.|+|.|.|..+.
T Consensus       254 ~~L~i~~v~~~d~G~Y~C~a~N~~G~  279 (291)
T 1qz1_A          254 SELTIRNVDKNDEAEYVCIAENKAGE  279 (291)
T ss_dssp             CEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             cEEEEEecChhcCEEEEEEEEeCCCc
Confidence            22333222    48999999998774

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.90  E-value=7e-23  Score=200.59  Aligned_cols=212  Identities=22%  Similarity=0.305  Sum_probs=158.8

Q ss_pred             cccccceeeEEEEecccCCCCCceEEeeCc---eEEEcCCCC--CCeEEEEEEe-------------cCcCCeeeeCCCc
Q psy15127         19 EIEPATRTNRVSISGDPGFDSRRSRSIFGS---VLGARGALS--DDQWKLIAKE-------------ALIKPFPISEPSD   80 (633)
Q Consensus        19 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~--~G~Y~C~a~~-------------v~~~p~~~~~~~~   80 (633)
                      .|.|+..+      |.....+.++.+..++   .|.|.+++.  +|.|+|.+.+             +..+|.+...+..
T Consensus        34 ~v~W~~~~------g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~  107 (291)
T 2wim_A           34 SIDWYNPQ------GEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSP  107 (291)
T ss_dssp             EEECBCTT------CCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSCCCS
T ss_pred             ceEEECCC------CcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEecccCceEEEEEEEEecCCcceEeCCCC
Confidence            67755422      3444455666665544   799999999  9999999988             3456667777778


Q ss_pred             eEEEcCCeEEEEEEEeccCCCeEEEEeCCccCC---CCCeEEcccceEEEccCCCCCCeEEEEEEEeCCce--EEEEEEE
Q psy15127         81 ATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP---TGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS--ISLRASL  155 (633)
Q Consensus        81 ~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~---~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~--~s~~~~l  155 (633)
                      ..+.+|+.+.|.|.+.+.|.+.+.|++++..+.   ..+.....++.|.|.+++.+|+|.|+|.+.|..+.  ....+.|
T Consensus       108 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~  187 (291)
T 2wim_A          108 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV  187 (291)
T ss_dssp             EEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEE
T ss_pred             hhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEE
Confidence            889999999999999999999999999998774   34556666789999999999999999999998754  3566677


Q ss_pred             EEEeeccccccCCC--ceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEE----eeeEEE
Q psy15127        156 TVHLLRDDFRAEPK--DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV----RPLYWN  229 (633)
Q Consensus       156 ~V~~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~y~C  229 (633)
                      .|..+ |.+...+.  ...+.+|+.+.|.|. ..|.|.+.+.|+++|..+.......+......+.+..+    .|.|+|
T Consensus       188 ~v~~~-p~~~~~~~~~~~~~~~g~~~~l~C~-~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  265 (291)
T 2wim_A          188 IVNVP-PAISMPQKSFNATAERGEEMTFSCR-ASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVC  265 (291)
T ss_dssp             EEEBC-CCCBCSCSEEECCSSSCCEEEEECB-CCCBSCCEEEEEETTEECCCTTTEEECSTTCEEEEESCCSTTCEEEEE
T ss_pred             EeccC-CccccCcccccceecCCCeEEEEEE-eecCCCCeEEEEECCEECcCCccEEEcCCccEEEEeeCCcccCEEEEE
Confidence            77776 66655544  346778999999999 58889999999999998876554333333334444333    489999


Q ss_pred             EeecCCCCC
Q psy15127        230 VARPRANLN  238 (633)
Q Consensus       230 ~a~~~~~~~  238 (633)
                      .|.|..+..
T Consensus       266 ~a~N~~G~~  274 (291)
T 2wim_A          266 RATNKAGED  274 (291)
T ss_dssp             EEEETTEEE
T ss_pred             EEEECCCce
Confidence            999988743

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.90  E-value=1.2e-22  Score=185.48  Aligned_cols=182  Identities=29%  Similarity=0.503  Sum_probs=137.3

Q ss_pred             cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCC--CCeEEcc-cceEEEccCCCCCCeEEEEEEEe
Q psy15127         68 ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT--GRAKILD-DRSLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus        68 v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~--~~~~~~~-~~~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                      +..+|.|...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+..  .+..... +..|.|.+++.+|+|.|+|.+.|
T Consensus         4 ~~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (192)
T 2iep_A            4 LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANN   83 (192)
T ss_dssp             CCEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEEC
T ss_pred             cCCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEc
Confidence            35678888888889999999999999999999999999999988753  3444433 45799999999999999999999


Q ss_pred             CCce-EEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEE
Q psy15127        145 LVGS-ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV  223 (633)
Q Consensus       145 ~~g~-~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (633)
                      ..|. .+..+.|.|..+ |.+...+....+.+|+.+.|.|. ..+.|.+.+.|                           
T Consensus        84 ~~~~~~~~~~~l~v~~~-p~~~~~~~~~~~~~g~~~~l~C~-~~g~p~~~v~W---------------------------  134 (192)
T 2iep_A           84 GVGGAVESCGALQVKMK-PKITRPPINVKIIEGLKAVLPCT-TMGNPKPSVSW---------------------------  134 (192)
T ss_dssp             SSSCCEEEEEEEEEEEE-EEEEECCCCEEEETTSCEEECCE-EEEESCCEEEE---------------------------
T ss_pred             CCCceeEeEEEEEEEeC-CccccCCcceEEeCCCcEEEEEE-EeccCCceEEE---------------------------
Confidence            8877 567788888877 66666665566666666666666 34444444455                           


Q ss_pred             eeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEc
Q psy15127        224 RPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQ  303 (633)
Q Consensus       224 ~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~  303 (633)
                                                                         ++++..+.     ...+.....++.|.|.
T Consensus       135 ---------------------------------------------------~~~~~~~~-----~~~~~~~~~~~~L~i~  158 (192)
T 2iep_A          135 ---------------------------------------------------IKGDSALR-----ENSRIAVLESGSLRIH  158 (192)
T ss_dssp             ---------------------------------------------------EETTEECC-----CCSSEEECTTSCEEES
T ss_pred             ---------------------------------------------------EeCCEEcc-----CCCcEEEecCCcEEEe
Confidence                                                               44444332     1123344456689999


Q ss_pred             CCCCCCCeEEEEEEEeCCcee-EEEEEEEEEe
Q psy15127        304 GVQKEDAGFFVCSALSVAGST-TVRAFLQVRE  334 (633)
Q Consensus       304 ~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~  334 (633)
                      ++..+|+|.|+|.|.|..|.. +..+.|.|..
T Consensus       159 ~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~  190 (192)
T 2iep_A          159 NVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEV  190 (192)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             cCChhhCEEEEEEEEcCCCcEEEEEEEEEEEe
Confidence            999999999999999999987 4457777764

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1

Probab=99.90  E-value=1.5e-22  Score=186.91  Aligned_cols=186  Identities=21%  Similarity=0.299  Sum_probs=145.3

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEee--eeceEEEecCCCCCeEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI--TSTSITVSDLKPDTSYMFIV  486 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~--~~~~~~i~~L~p~~~Y~~~v  486 (633)
                      .|.+|..+.+.. +.+++.|+|+++.+   +++++.+|.|+|+.......|.......  ..+.+.+ +|.|++.|.|+|
T Consensus         5 ~P~~P~~~~~~~-~~~sv~l~W~~p~~---~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~-~L~p~t~Y~~~V   79 (205)
T 1cfb_A            5 VPNAPKLTGITC-QADKAEIHWEQQGD---NRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVV-QMSPWANYTFRV   79 (205)
T ss_dssp             CCCCCEEEEEEE-CSSEEEEEEECCCC---TTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEE-ECCSSEEEEEEE
T ss_pred             CCCCCCCcEEEe-cCCEEEEEEECccc---CCCceEEEEEEEecCCCCCCceeeeeccCCCceEEEE-eCCCCCEEEEEE
Confidence            356788888888 99999999999963   3678999999998775556675433332  3456777 999999999999


Q ss_pred             EEEeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhc
Q psy15127        487 RAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARL  566 (633)
Q Consensus       487 ~a~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~  566 (633)
                      +|.|..|.|.++.....++|.+..|..+|..+               .+...+.++|.|+|++|      ...+.+|.+.
T Consensus        80 ~A~n~~G~~~~s~~~~~~~T~~~~P~~~P~~~---------------~~~~~~~~sv~l~W~~p------~~~~~ng~i~  138 (205)
T 1cfb_A           80 IAFNKIGASPPSAHSDSCTTQPDVPFKNPDNV---------------VGQGTEPNNLVISWTPM------PEIEHNAPNF  138 (205)
T ss_dssp             EEEETTEECCCCCCCCCEEECCCCCSCCCSCC---------------EEECSSTTCEEEECCCC------CGGGTCSSSC
T ss_pred             EEEECCccCCCCCCceeEEcCCcCCCCCCeee---------------EeecCCCCeEEEEEECC------CccccCCCce
Confidence            99999999999854446888887776544332               77888899999999954      3336788999


Q ss_pred             ceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEecccccccccc
Q psy15127        567 GTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGAR  631 (633)
Q Consensus       567 ~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~  631 (633)
                      +| .|+|+..+...      .|....    ......++++|.+|++++.|.|+|+|.|..|.|++
T Consensus       139 ~Y-~v~~~~~~~~~------~~~~~~----~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~  192 (205)
T 1cfb_A          139 HY-YVSWKRDIPAA------AWENNN----IFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNV  192 (205)
T ss_dssp             EE-EEEEEESSTTC------CCEEEE----ECCTTCCEEEECSCCSSCEEEEEEEEEETTEECSS
T ss_pred             EE-EEEEEECCCCC------CcEEEE----ecCCCccEEEEcCCCCCcEEEEEEEEEcCCCcCCC
Confidence            99 99999876653      254221    12335789999999999999999999999999995

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A

Probab=99.90  E-value=1.3e-22  Score=188.26  Aligned_cols=190  Identities=15%  Similarity=0.154  Sum_probs=144.0

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCC-CCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPR-GGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVR  487 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~-~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~  487 (633)
                      ++.+|..+.+...+.+++.|+|++|... .+.++.+.+|.|+|+..+... +...........++|.+|.|++.|.|+|+
T Consensus         4 P~~~P~~l~~~~~~~~si~l~W~~p~~~~~~~~~~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~   82 (211)
T 3p4l_A            4 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPAN-TKYKNANATTLSYLVTGLKPNTLYEFSVM   82 (211)
T ss_dssp             CCCCCEEEEEEECSSSCEEEEEECTTSCTTCCCCSSCEEEEEEEECC----CCCEEEEESSSEEEECSCCTTCEEEEEEE
T ss_pred             CCCCCCCEEEEecCCCeEEEEEeCCCCCcccccCCCcEEEEEEEECCCCc-ceEEEeCCCceEEEecCcCCCCEEEEEEE
Confidence            4567888888888999999999997532 112467899999999865432 22222344567899999999999999999


Q ss_pred             EEeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeec--ccceEEEEEEEecCCCcccccchhhhh
Q psy15127        488 AENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPT--ASTAVRITWEVSWGSVPQHLLDEARAR  565 (633)
Q Consensus       488 a~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~si~v~W~~p~~~~p~~~~~~~~~i  565 (633)
                      |.|..|.|++|... .+.|.+..|..+|..+               .+...  +.+++.|+|++|        ...+|.+
T Consensus        83 A~n~~g~~~~S~~~-~~~t~~~~P~~~P~~~---------------~~~~~~~s~~sv~l~W~~p--------~~~~g~i  138 (211)
T 3p4l_A           83 VTKGRRSSTWSMTA-HGTTFELVPTSPPKDV---------------TVVSKEGKPKTIIVNWQPP--------SEANGKI  138 (211)
T ss_dssp             EEETTEECCCCCCE-EEECCCCCCCSCCEEE---------------EEEEETTEEEEEEEEEECC--------TTCCSCC
T ss_pred             EEcCCCCCccceeE-eeecccCCCCCCCcce---------------EEEecCCCCCEEEEEECCC--------CCCCCCE
Confidence            99999999988765 5777777776444321               56666  478999999955        4567899


Q ss_pred             cceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        566 LGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       566 ~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      .+| .|+|+.......    ..|.     .....+..++++|.+|+|++.|.|+|+|.|..|.|++|+
T Consensus       139 ~~Y-~v~~~~~~~~~~----~~~~-----~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  196 (211)
T 3p4l_A          139 TGY-IIYYSTDVNAEI----HDWV-----IEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSE  196 (211)
T ss_dssp             CEE-EEEEESCTTSCG----GGSE-----EEEEESSCSEEEECCCCTTCEEEEEEEEEETTEECCCCC
T ss_pred             EEE-EEEEEECCCCCC----CceE-----EEEecCCeeEEEEcCCCCCCEEEEEEEEEcCCccCCCCC
Confidence            999 999987655431    1121     122345788999999999999999999999999999985

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.90  E-value=3.6e-24  Score=222.44  Aligned_cols=278  Identities=13%  Similarity=0.136  Sum_probs=173.0

Q ss_pred             CceEEee-----CceEEEcCCCC--CCeEEEEEEe------------cC----cCCeeeeCCCceEEEcCCeEEEEEEEe
Q psy15127         40 RRSRSIF-----GSVLGARGALS--DDQWKLIAKE------------AL----IKPFPISEPSDATVLSGSVVEFVCRVG   96 (633)
Q Consensus        40 ~~~~~~~-----~~~L~i~~v~~--~G~Y~C~a~~------------v~----~~p~~~~~~~~~~~~~G~~~~L~C~~~   96 (633)
                      .|+.+..     +++|.|.+++.  +|.|+|.|.+            +.    .+|.+...+....+.+|+.++|.|.+.
T Consensus        65 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~  144 (434)
T 1igy_B           65 DKATLTRDRSSNTANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVK  144 (434)
T ss_dssp             TTEECCBCGGGCBBCEEECSBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEE
T ss_pred             ccEEEEEECCCCEEEEEECCCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEe
Confidence            4666543     24799999998  9999999976            21    235444333333457899999999998


Q ss_pred             cc-CCC-eEEEEeCCccCCCC-------CeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEe--------
Q psy15127         97 GD-PLP-TILWRRDDGKMPTG-------RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHL--------  159 (633)
Q Consensus        97 ~~-p~p-~i~W~~~~~~i~~~-------~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~--------  159 (633)
                      |. |.| .|.|+|++..+...       .......+.|.|.+++.+| |.|+|.|.|..+.......+.+..        
T Consensus       145 g~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~  223 (434)
T 1igy_B          145 GYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCIC  223 (434)
T ss_dssp             EEBSSCCEEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCC
T ss_pred             eecCCCeEEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccC
Confidence            86 776 99999998754210       0111123579999999999 999999999988744444443321        


Q ss_pred             -ec--ccc-ccCCCceE-EecCCcEEEEEeCCCCCC----CCeEEEEECCEEeccCCCeeEE-ec------cceeeeEE-
Q psy15127        160 -LR--DDF-RAEPKDTR-VASGETALLECGPPKGQP----EPTLHWKKNGQFIDLESSKSLD-LS------RRTLGWLR-  222 (633)
Q Consensus       160 -~~--p~~-~~~~~~~~-~~~g~~~~l~C~~~~~~p----~~~i~W~~~~~~~~~~~~~~~~-~~------~~~~~~~~-  222 (633)
                       ..  |.+ ..+|.... +.+|+.+.|.|.+. |.+    .+.|.|++++..+......... ..      ...+.+.. 
T Consensus       224 ~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~-g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  302 (434)
T 1igy_B          224 TVPEVSSVFIFPPKPKDTLLITVTPKVTCVVV-DISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQ  302 (434)
T ss_dssp             CCSSSCCEEEECCCHHHHHSTTSCCEEEEEEC-CCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHH
T ss_pred             CCCcCcEEEEeCCChHHhcccCCCcEEEEEEe-ccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHH
Confidence             00  222 22333222 78899999999964 553    4589999999776432111100 00      11222222 


Q ss_pred             ---EeeeEEEEeecCCCCCCc---cc----ccccceeEEe------cCCceEEEEEEEeeecCC--eeEEEECCEEEEec
Q psy15127        223 ---VRPLYWNVARPRANLNPR---YI----GRKMASLLIW------NHPRVNRLSCFAEGSPLP--SVFWTQEGSQVLMF  284 (633)
Q Consensus       223 ---~~g~y~C~a~~~~~~~p~---~~----~~~~~~~~~~------~~g~~~~l~C~~~g~p~~--~v~W~~~g~~~~~~  284 (633)
                         ..|.|+|.|.|..+..+.   +.    ....+.....      ..|+.++|.|.+.|.+++  .|.|+++|..+...
T Consensus       303 ~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~  382 (434)
T 1igy_B          303 DWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENY  382 (434)
T ss_dssp             HHHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCC
T ss_pred             HccCCCcEEEEEECCCCCCceeEEEeccCCCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCc
Confidence               248999999998774311   10    0111111111      246679999999996543  89999999876311


Q ss_pred             cCCccceEEEccC------ceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127        285 PGNAYGHLHVTQE------GTLRIQGVQKEDAGFFVCSALSVAG  322 (633)
Q Consensus       285 ~~~~~~~~~~~~~------~~l~i~~~~~~d~G~Y~C~a~n~~g  322 (633)
                         .........+      +.|.|.....+|.|.|+|.|.|...
T Consensus       383 ---~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  423 (434)
T 1igy_B          383 ---KNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  423 (434)
T ss_dssp             ---EECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTS
T ss_pred             ---eeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCC
Confidence               0000001122      2466777777789999999999754

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A

Probab=99.89  E-value=1.7e-22  Score=187.22  Aligned_cols=182  Identities=18%  Similarity=0.280  Sum_probs=142.0

Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEee----eeceEEEecCCCCCeEEEE
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI----TSTSITVSDLKPDTSYMFI  485 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~----~~~~~~i~~L~p~~~Y~~~  485 (633)
                      |++|..+.+...+. ++.|+|.+|...  ++.++.+|.|+|+..+. ..|.......    ....++|.+|.|++.|.|+
T Consensus         9 P~~P~~~~~~~~~~-s~~l~W~~p~~~--~g~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~   84 (209)
T 2vkw_A            9 PSSPSIDQVEPYSS-TAQVQFDEPEAT--GGVPILKYKAEWRAVGE-EVWHSKWYDAKEASMEGIVTIVGLKPETTYAVR   84 (209)
T ss_dssp             CCCCEEEEEEECSS-CEEEEEECCSCC--CSSCCCEEEEEEEESSC-CCCEEEEEEHHHHHHHSEEEECCCCTTCEEEEE
T ss_pred             CcCCcccEeeeccC-eEEEEEcCCCcC--CCcceeEEEEEEeeCCC-CCceEeEeeccCCCccceEEeCCCCCCCeEEEE
Confidence            55677777766666 689999998643  24569999999997653 4565443321    2468999999999999999


Q ss_pred             EEEEeccccCCCCCCCCceeecCC-CCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhh
Q psy15127        486 VRAENSHGLGIPSPVSPITRTLGL-NSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARA  564 (633)
Q Consensus       486 v~a~n~~G~g~~s~~~~~~~t~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~  564 (633)
                      |+|.|..|.|+++... .+.|.+. +|.+|..+                .+..++.++|.|+|++|        .+.++.
T Consensus        85 V~A~n~~G~~~~s~~~-~~~T~~~~~P~~P~~~----------------~~~~~~~~sv~l~W~~p--------~~~~~~  139 (209)
T 2vkw_A           85 LAALNGKGLGEISAAS-EFKTQPVREPSAPKLE----------------GQMGEDGNSIKVNLIKQ--------DDGGSP  139 (209)
T ss_dssp             EEEEETTEECCCCCCE-EEECCCSCSCCCCEEE----------------EEECTTSSCEEEEEECC--------CCTTSC
T ss_pred             EEEEcCCcccCCcccc-cccccCCCCCCCCccc----------------ccccccCCeEEEEEECc--------ccCCCC
Confidence            9999999999988766 3666665 66666655                77888999999999954        567899


Q ss_pred             hcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        565 RLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       565 i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      |.+| .|+|+. ...       .|...    ....+..++++|.+|++++.|.|+|+|.|..|.|++|+
T Consensus       140 i~~Y-~v~~~~-~~~-------~~~~~----~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~S~  195 (209)
T 2vkw_A          140 IRHY-LVRYRA-LSS-------EWKPE----IRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAH  195 (209)
T ss_dssp             CCEE-EEEEEE-TTS-------CCCCC----EEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE
T ss_pred             CceE-EEEEEC-CCC-------CCcee----eecCCCccEEEecCCCCCCEEEEEEEEEeCCccCCcch
Confidence            9999 999998 332       24432    22345678999999999999999999999999999984

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.89  E-value=3.8e-22  Score=186.15  Aligned_cols=190  Identities=40%  Similarity=0.636  Sum_probs=149.2

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC----CeEEcccceE----EEccCCCCCCeEEEE
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG----RAKILDDRSL----QIENVGPQDEGLYIC  140 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~----~~~~~~~~~L----~i~~v~~~d~G~Y~C  140 (633)
                      ..+|.|...|..+.+.+|+.+.|.|.+.+.|.+.|.|+|+|..+...    ......++.+    .|.+++.+|+|.|+|
T Consensus         7 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C   86 (217)
T 2vr9_A            7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC   86 (217)
T ss_dssp             CCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEE
T ss_pred             cCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEE
Confidence            45789999999999999999999999999999999999999988643    2333344443    688999999999999


Q ss_pred             EEEeCCceE-EEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceee
Q psy15127        141 DVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLG  219 (633)
Q Consensus       141 ~~~n~~g~~-s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~  219 (633)
                      .+.|..|.. +..+.|.|...+|.+...+....+.+|+.+.|.|.+..+.|.+.+.|++++..+.........       
T Consensus        87 ~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~-------  159 (217)
T 2vr9_A           87 VAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFG-------  159 (217)
T ss_dssp             EEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC----------
T ss_pred             EEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccc-------
Confidence            999988875 456778887765777778888889999999999995588899999999998876532110000       


Q ss_pred             eEEEeeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCce
Q psy15127        220 WLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT  299 (633)
Q Consensus       220 ~~~~~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~  299 (633)
                                                                                          ...+.....++.
T Consensus       160 --------------------------------------------------------------------~~~~~~~~~~~~  171 (217)
T 2vr9_A          160 --------------------------------------------------------------------ASSRVRIVDGGN  171 (217)
T ss_dssp             --------------------------------------------------------------------CCCSEEEETTTE
T ss_pred             --------------------------------------------------------------------cCCcEEecCCCc
Confidence                                                                                012223335568


Q ss_pred             EEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127        300 LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR  333 (633)
Q Consensus       300 l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  333 (633)
                      |.|.++..+|.|.|+|.|.|..|....+..+.+.
T Consensus       172 L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~  205 (217)
T 2vr9_A          172 LLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV  205 (217)
T ss_dssp             EEESSCCSTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEeeCCHHHCeEEEEEEEcccceeccccEEEEE
Confidence            9999999999999999999999998777655554

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.89  E-value=7.5e-22  Score=207.33  Aligned_cols=254  Identities=15%  Similarity=0.144  Sum_probs=156.8

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCC--ccC------------------CCCCeEEcc-----cceEE
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDD--GKM------------------PTGRAKILD-----DRSLQ  126 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~--~~i------------------~~~~~~~~~-----~~~L~  126 (633)
                      .+..|..+.+.+|++++|.|.+.+.+  .+.+.|+|+.  ..+                  ..+++....     +..|.
T Consensus         4 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   83 (475)
T 1iga_A            4 LLEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMG   83 (475)
T ss_pred             eeccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEE
Confidence            34567888999999999999998754  5689999953  211                  023333332     24799


Q ss_pred             EccCCCCCCeEEEEEEEeCCc------eEEEEEEEEEEee---ccccccCCCceEEecCCcEEEEEeCCCCCCC-C-eEE
Q psy15127        127 IENVGPQDEGLYICDVENLVG------SISLRASLTVHLL---RDDFRAEPKDTRVASGETALLECGPPKGQPE-P-TLH  195 (633)
Q Consensus       127 i~~v~~~d~G~Y~C~~~n~~g------~~s~~~~l~V~~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~-~i~  195 (633)
                      |.+++.+|+|.|.|.+.+..|      .....+.|.|...   +|.+...+ ...+.+|+.+.|.|.+....|. + .|.
T Consensus        84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~-~~~~~~g~~v~L~C~~~g~~P~~p~~v~  162 (475)
T 1iga_A           84 LSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLS-LCSTQPDGNVVIACLVQGFFPQEPLSVT  162 (475)
T ss_pred             ECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecC-ccccCCCCeEEEEEEEeeecCCCceEEE
Confidence            999999999999999998765      2334567777641   23333222 1223689999999995444466 5 999


Q ss_pred             EEECCEEeccCCCeeEE-eccc------eeeeE----EEeeeEEEEeecCCCCCCccccc--------------------
Q psy15127        196 WKKNGQFIDLESSKSLD-LSRR------TLGWL----RVRPLYWNVARPRANLNPRYIGR--------------------  244 (633)
Q Consensus       196 W~~~~~~~~~~~~~~~~-~~~~------~~~~~----~~~g~y~C~a~~~~~~~p~~~~~--------------------  244 (633)
                      |++++............ ....      .+.+.    ...|.|+|.|.|..+........                    
T Consensus       163 W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~  242 (475)
T 1iga_A          163 WSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSP  242 (475)
T ss_pred             EcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCC
Confidence            99988532211000000 0111      12222    12489999999987532100000                    


Q ss_pred             --cccee-------EEecCCceEEEEEEEeeecC---CeeEEEECCEEEEeccCCccceE---EEccCceEEEcCCCCCC
Q psy15127        245 --KMASL-------LIWNHPRVNRLSCFAEGSPL---PSVFWTQEGSQVLMFPGNAYGHL---HVTQEGTLRIQGVQKED  309 (633)
Q Consensus       245 --~~~~~-------~~~~~g~~~~l~C~~~g~p~---~~v~W~~~g~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d  309 (633)
                        .....       ..+..|+.++|.|.+.|.++   +.+.|  ++..+.........+.   .....+.|.|.++..+|
T Consensus       243 ~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d  320 (475)
T 1iga_A          243 SCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNH  320 (475)
T ss_pred             CCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhcc
Confidence              00111       11467899999999998865   69999  4443321100000000   01134479999999999


Q ss_pred             CeEEEEEEEeCCceeEEEEEE
Q psy15127        310 AGFFVCSALSVAGSTTVRAFL  330 (633)
Q Consensus       310 ~G~Y~C~a~n~~g~~~~~~~l  330 (633)
                      +|.|+|.|.|..|.......|
T Consensus       321 ~G~Y~C~a~n~~~~~~~~~~v  341 (475)
T 1iga_A          321 GKTFTCTAAYPESKTPLTATL  341 (475)
T ss_pred             CCcEEEEEEcCCCCCceEEEe
Confidence            999999999998875444344

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.89  E-value=6.7e-22  Score=181.29  Aligned_cols=181  Identities=23%  Similarity=0.372  Sum_probs=139.7

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEcccc---eEEEccCCCCCCeEEEEEEEe
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDDR---SLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~~~---~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                      ..+|.+...+.++.+.+|+.+.|.|.+.+.|.+.+.|+|++..+... +.....++   .|.|.+++.+|+|.|+|.+.|
T Consensus         5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   84 (197)
T 3lcy_A            5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATN   84 (197)
T ss_dssp             CEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEEC
T ss_pred             CCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEEC
Confidence            45788999999999999999999999999999999999999987654 33333333   799999999999999999999


Q ss_pred             CCceEEEEEEEEEEeecccccc---CCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeE
Q psy15127        145 LVGSISLRASLTVHLLRDDFRA---EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWL  221 (633)
Q Consensus       145 ~~g~~s~~~~l~V~~~~p~~~~---~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~  221 (633)
                      ..+.....+.|.|..+ |.+..   .+....+.+|+.+.|.|. ..+.|.+.+.|++++..+....              
T Consensus        85 ~~~~~~~~~~l~v~~~-p~~~~~~~~~~~~~~~~g~~~~l~C~-~~~~p~p~v~W~~~~~~~~~~~--------------  148 (197)
T 3lcy_A           85 EVGEVETSSKLLLQAT-PQFHPGYPLKEKYYGAVGSTLRLHVM-YIGRPVPAMTWFHGQKLLQNSE--------------  148 (197)
T ss_dssp             SSCEEEEEEEEEEEEE-EEECTTSCCCSEEEEETTSCEEEEEE-EEEESCCEEEEEETTEECCCCS--------------
T ss_pred             CCCceeEEEEEEEEcC-CCCCCCccCCcceeecCCCeEEEEEE-EeeeeCCeeEEeECCEECCCCC--------------
Confidence            9998888899999887 44332   123445667877777777 4566666666666665443211              


Q ss_pred             EEeeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc---cCc
Q psy15127        222 RVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT---QEG  298 (633)
Q Consensus       222 ~~~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~---~~~  298 (633)
                                                                                           +....   ...
T Consensus       149 ---------------------------------------------------------------------~~~~~~~~~~~  159 (197)
T 3lcy_A          149 ---------------------------------------------------------------------NITIENTEHYT  159 (197)
T ss_dssp             ---------------------------------------------------------------------SEEEEECSSEE
T ss_pred             ---------------------------------------------------------------------ceEEEEcCCEE
Confidence                                                                                 11111   124


Q ss_pred             eEEEcCCCC-CCCeEEEEEEEeCCceeEEEEEEEEEe
Q psy15127        299 TLRIQGVQK-EDAGFFVCSALSVAGSTTVRAFLQVRE  334 (633)
Q Consensus       299 ~l~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~l~v~~  334 (633)
                      .|.|.++.. +|.|.|+|.|.|..|..+..+.|.|.+
T Consensus       160 ~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          160 HLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             EEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             EEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence            799999985 899999999999999999999988864

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.89  E-value=1.6e-21  Score=177.59  Aligned_cols=179  Identities=26%  Similarity=0.399  Sum_probs=128.6

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCC---CCCeEEcccceEEEccCCCCCCeEEEEEEEeCC
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP---TGRAKILDDRSLQIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~---~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      .+|.|...|....+.+|+.+.|.|.+.+.|.+.+.|++++..+.   ..+.....++.|.|.+++.+|+|.|+|.+.+..
T Consensus         1 s~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   80 (189)
T 2v5t_A            1 SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEA   80 (189)
T ss_dssp             CCCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETT
T ss_pred             CCceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcC
Confidence            36889999999999999999999999999999999999998764   345666677899999999999999999999886


Q ss_pred             ce--EEEEEEEEEEeeccccccCCC--ceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEE
Q psy15127        147 GS--ISLRASLTVHLLRDDFRAEPK--DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLR  222 (633)
Q Consensus       147 g~--~s~~~~l~V~~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (633)
                      +.  ....+.|.|..+ |.+...+.  ...+.+|                                              
T Consensus        81 ~~~~~~~~~~l~v~~~-p~~~~~~~~~~~~~~~g----------------------------------------------  113 (189)
T 2v5t_A           81 RGEIDFRDIIVIVNVP-PAISMPQKSFNATAERG----------------------------------------------  113 (189)
T ss_dssp             TTEEEEEEEEEEEEEE-EEEECSCCEEEEETTSC----------------------------------------------
T ss_pred             CCceEEEEEEEEecCC-CCcccccccccccccCC----------------------------------------------
Confidence            44  345566667665 44433322  1223334                                              


Q ss_pred             EeeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEE-EccCceEE
Q psy15127        223 VRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLH-VTQEGTLR  301 (633)
Q Consensus       223 ~~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~-~~~~~~l~  301 (633)
                                                       +.+.|.|.+.|.|.+.+.|+++|..+..     ..+.. ...++.|.
T Consensus       114 ---------------------------------~~v~l~C~~~g~p~~~v~W~~~g~~~~~-----~~~~~~~~~~~~L~  155 (189)
T 2v5t_A          114 ---------------------------------EEMTFSCRASGSPEPAISWFRNGKLIEE-----NEKYILKGSNTELT  155 (189)
T ss_dssp             ---------------------------------CCEEEECEEEEESCCEEEEEETTEECCC-----SSSEEEETTTTEEE
T ss_pred             ---------------------------------CcEEEEEEEccCCCCeEEEEECCEECcC-----CCcEEEecCCCEEE
Confidence                                             4455555555555556666666654421     11112 22356899


Q ss_pred             EcCCCCCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127        302 IQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR  333 (633)
Q Consensus       302 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  333 (633)
                      |.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       156 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          156 VRNIINSDGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EcCCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence            99999999999999999999999998888875

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.89  E-value=1.3e-21  Score=178.51  Aligned_cols=179  Identities=25%  Similarity=0.387  Sum_probs=137.6

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccC-CCeEEEEe-CCccCCC--CCeEEc----ccceEEEccCCCCCCeEEEEEE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDP-LPTILWRR-DDGKMPT--GRAKIL----DDRSLQIENVGPQDEGLYICDV  142 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p-~p~i~W~~-~~~~i~~--~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~  142 (633)
                      ++.+...|.+..+.+|+.++|.|.+.+.+ .+.+.|++ ++..+..  .+....    ....|.|.+++.+|+|.|+|.+
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence            46778889999999999999999998876 78999999 8877653  233332    3468999999999999999999


Q ss_pred             EeCC-ceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeE
Q psy15127        143 ENLV-GSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWL  221 (633)
Q Consensus       143 ~n~~-g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~  221 (633)
                      .+.. +..+..+.|.|..+ |.+...+....+.+|+.+.|.|. ..+.|.+.+.|++++..+....              
T Consensus        82 ~~~~~~~~~~~~~l~v~~~-p~~~~~~~~~~~~~g~~~~l~C~-~~g~p~~~v~W~~~~~~~~~~~--------------  145 (191)
T 1epf_A           82 TAEDGTQSEATVNVKIFQK-LMFKNAPTPQEFKEGEDAVIVCD-VVSSLPPTIIWKHKGRDVILKK--------------  145 (191)
T ss_dssp             EETTTEEEEEEEEEEEECC-SEEEECCSSEECCTTSCEEECCE-EECSSCCEEEEEETTEEGGGGC--------------
T ss_pred             EcCCCcceEEEEEEEeecC-ceEecCCCcEeecCCCeEEEEEE-ECCCCCCEEEEEECCEEeeccC--------------
Confidence            9998 55778888888877 77777777777778888888887 4566667777777665543211              


Q ss_pred             EEeeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEE
Q psy15127        222 RVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLR  301 (633)
Q Consensus       222 ~~~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~  301 (633)
                                                                                         ..++....++.|.
T Consensus       146 -------------------------------------------------------------------~~~~~~~~~~~L~  158 (191)
T 1epf_A          146 -------------------------------------------------------------------DVRFIVLSNNYLQ  158 (191)
T ss_dssp             -------------------------------------------------------------------CTTEEECTTSCEE
T ss_pred             -------------------------------------------------------------------CceEEEecCCeEE
Confidence                                                                               1223344556899


Q ss_pred             EcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127        302 IQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       302 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      |.++..+|+|.|+|.|.|..|.......+.|
T Consensus       159 i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          159 IRGIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             ETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             ECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            9999999999999999999976666555554

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}

Probab=99.89  E-value=1.1e-23  Score=227.83  Aligned_cols=366  Identities=15%  Similarity=0.140  Sum_probs=223.4

Q ss_pred             cccCCCceEEecCCcEEEEEeCCC------CCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEE---eeeEEEEeecC
Q psy15127        164 FRAEPKDTRVASGETALLECGPPK------GQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV---RPLYWNVARPR  234 (633)
Q Consensus       164 ~~~~~~~~~~~~g~~~~l~C~~~~------~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~y~C~a~~~  234 (633)
                      ..+.|.+..+..|++++|.|.+..      +.+.+.|.|++||..+.......+......+.+..+   .+.|.|.+...
T Consensus         6 ~~i~p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~~~i~W~~~~~~i~~~~~~~~~~~~~~l~i~~~~~~~~~y~C~~~~~   85 (589)
T 3l5h_A            6 GYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTCNILTF   85 (589)
T ss_dssp             CCCSCSCCCCCSSSCCCCCC-CCTTTTTTTTCCTTTCCCBCSSSBSCGGGCBCCSSSCCBCCCCCCCSSCCCCCCC-CCT
T ss_pred             eEEecCCCEEeCCCCEEEEEEEeCccCccccccccceEEEeCCEECChHHccccCCcEeEEEEecCCCcceeeEEecccC
Confidence            345677788899999999999532      567789999999976654322221111122222222   35788987642


Q ss_pred             CCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEE
Q psy15127        235 ANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFV  314 (633)
Q Consensus       235 ~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  314 (633)
                      .......  ......+...++....|.|...+.....+.|.......              ....+.|.--. .+.....
T Consensus        86 ~~~~~~~--~~~~l~v~~pP~~P~nl~c~~~~~~~~~~~W~~~~~~~--------------~~~~y~l~~~~-~~~~~~~  148 (589)
T 3l5h_A           86 GQLEQNV--YGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETH--------------LETNFTLKSEW-ATHKFAD  148 (589)
T ss_dssp             TCC-CCC--CCCCCCC-CCCCCCEEEEEEEETTSCEEEEEECCSCCS--------------SCEEEEECCBC-SSSBCCC
T ss_pred             CCcccEE--EeEEEeccCCCCCCEeeEEEECCCceEEEEECCCCcCC--------------cCceEEEEEEE-cCCCccc
Confidence            2211000  00001111234556789999988877889998753210              00122222110 1111122


Q ss_pred             EEEEeCCceeEEEEEEEEEecccCCCceEEeCCCccccCCCCCceEEe-cccccCCEEEEEEEEcCCcceeE-EEEEEee
Q psy15127        315 CSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIAC-DLRETDSGLYTCTASSESGETSW-SASLSVE  392 (633)
Q Consensus       315 C~a~n~~g~~~~~~~l~v~~~~~~p~p~~~~~~~~~~~g~p~~~~~i~-~~~~~d~g~y~c~a~n~~g~~~~-~~~l~v~  392 (633)
                      |..... +                                 .....+. .+.....|.|+|.|.|..|.... ...+...
T Consensus       149 c~~~~~-~---------------------------------~~~c~~~~~l~~~~~Y~~~v~a~n~~G~~~s~~~~~~~~  194 (589)
T 3l5h_A          149 CKAKRD-T---------------------------------PTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPV  194 (589)
T ss_dssp             EECBTT-B---------------------------------SSCCBCCSCCCSSSCEEECEEEEESSCCBCCCCEEECGG
T ss_pred             CCCCCC-C---------------------------------cEEEEECCCCchheeEEEEEEEEeCCCCcccccEEEccc
Confidence            321100 0                                 0111122 45566789999999999997522 2222211


Q ss_pred             cCCCCCceecCCCCCCCCCCCCCcEEE--EeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEE---eee
Q psy15127        393 PRPGPHAVHRMPDSGLFPGPPAAPVIL--NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAH---RIT  467 (633)
Q Consensus       393 ~~p~~~~~~~~~~~~~~p~~p~~~~~~--~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~---~~~  467 (633)
                      .             ...|.+|..+.+.  ....+++.|+|++|...   ++.+..|.|+|+..+. ..|.....   ...
T Consensus       195 ~-------------~~~p~pP~~~~~~~~~~~~~~v~l~W~~p~~~---~~~~~~Y~v~~~~~~~-~~w~~~~~~~~~~~  257 (589)
T 3l5h_A          195 Y-------------KVKPNPPHNLSVINSEELSSILKLTWTNPSIK---SVIILKYNIQYRTKDA-STWSQIPPEDTAST  257 (589)
T ss_dssp             G-------------SEECCCCCSCEEECTTTCTTCEEEECCCCGGG---GTSCEEEEEEEEETTC-SCCBCCCTTSSCSC
T ss_pred             c-------------EEEcCCCceEEEEecCCCCCeEEEEeCCCCCC---CeeeEEEEEEECCCCC-CCcEEEccccCcCc
Confidence            1             1235678888773  46788999999998753   4688999999998753 45653211   223


Q ss_pred             eceEEEecCCCCCeEEEEEEEEeccccCCCCCCCC--ceeecCCCCCCCcchHHHHHHHhCCceEEeeee-eecccceEE
Q psy15127        468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP--ITRTLGLNSLVPQHLLDEARARLGTKVVNLREL-IPTASTAVR  544 (633)
Q Consensus       468 ~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~--~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~si~  544 (633)
                      ...++|.+|.|++.|.|+|+|.|..|.|.+|.++.  .+.|.+..|..+|...           ... .+ ...+.+++.
T Consensus       258 ~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~~~T~~~~P~~~p~~~-----------~~v-~~~~~~~~~~v~  325 (589)
T 3l5h_A          258 RSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFW-----------YKI-DPSHTQGYRTVQ  325 (589)
T ss_dssp             CSEEEECSCCSSCCEEEEEEEEESSSCSCCCCCCCCBCCCCCCCCCCSCCCEE-----------EEC-CSCSSTTSCCEE
T ss_pred             eeEEEECCCCCCCEEEEEEEEEeCCCCCccCCCCCccccccCccCCCCCCcEE-----------EEe-ecCcCCCcceEE
Confidence            57899999999999999999999999988865442  2467777775555421           000 11 356789999


Q ss_pred             EEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccc
Q psy15127        545 ITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFF  624 (633)
Q Consensus       545 v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n  624 (633)
                      |.|++      +.....+|.|.+| .|.|+..+..        |..       .....+.+++  |.+++.|.|+|.|.|
T Consensus       326 l~W~p------~~~~~~~g~i~~Y-~v~~~~~~~~--------~~~-------~~~~~~~~~~--l~~~~~Y~~~V~A~n  381 (589)
T 3l5h_A          326 LVWKT------LPPFEANGKILDY-EVTLTRWKSH--------LQN-------YTVNATKLTV--NLTNDRYLATLTVRN  381 (589)
T ss_dssp             EEECC------CCTTTSSSCCCEE-EEEECCTTSC--------CCB-------CCCSSSCCEE--CCCSSCCCEEEEEEB
T ss_pred             EEEee------CCchhccCceeeE-EEEEecCCCC--------cee-------eccCCceEEE--EeCCCCEEEEEEEEe
Confidence            99994      3335678999999 9999765543        221       1122344444  899999999999999


Q ss_pred             cccccccCC
Q psy15127        625 KTVEGARLD  633 (633)
Q Consensus       625 ~~g~g~~s~  633 (633)
                      ..|.|++|.
T Consensus       382 ~~G~~~~s~  390 (589)
T 3l5h_A          382 LVGKSDAAV  390 (589)
T ss_dssp             TTBCCCCCC
T ss_pred             CCccCCCeE
Confidence            999999874

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.89  E-value=9.1e-22  Score=182.77  Aligned_cols=185  Identities=38%  Similarity=0.645  Sum_probs=142.2

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC------CeEEcccceE-----EEccCCCCCCeE
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG------RAKILDDRSL-----QIENVGPQDEGL  137 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~------~~~~~~~~~L-----~i~~v~~~d~G~  137 (633)
                      ..+|.|...|..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+...      ......++.+     .|.+++.+|+|.
T Consensus         7 ~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   86 (212)
T 2v9r_A            7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV   86 (212)
T ss_dssp             CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEE
T ss_pred             cCCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeE
Confidence            35788999999999999999999999999999999999999887532      2333344444     445678999999


Q ss_pred             EEEEEEeCCceE-EEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccc
Q psy15127        138 YICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRR  216 (633)
Q Consensus       138 Y~C~~~n~~g~~-s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~  216 (633)
                      |+|.+.|..|.. +..+.|.|...++.+...+....+.+|+.+.|.|.+..+.|.+.+.|++++..+....         
T Consensus        87 Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~---------  157 (212)
T 2v9r_A           87 YVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKD---------  157 (212)
T ss_dssp             EEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTS---------
T ss_pred             EEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCc---------
Confidence            999999988874 5677888887756677777778888999999999844777777888887776554211         


Q ss_pred             eeeeEEEeeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEcc
Q psy15127        217 TLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ  296 (633)
Q Consensus       217 ~~~~~~~~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~  296 (633)
                                                                                               .+.. ..
T Consensus       158 -------------------------------------------------------------------------~~~~-~~  163 (212)
T 2v9r_A          158 -------------------------------------------------------------------------ERIT-IR  163 (212)
T ss_dssp             -------------------------------------------------------------------------TTEE-EE
T ss_pred             -------------------------------------------------------------------------ceEE-cc
Confidence                                                                                     0111 12


Q ss_pred             CceEEEcCCCCCCCeEEEEEEEeCCceeEEE-EEEEEEecc
Q psy15127        297 EGTLRIQGVQKEDAGFFVCSALSVAGSTTVR-AFLQVREFC  336 (633)
Q Consensus       297 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~~  336 (633)
                      ++.|.|.++..+|.|.|+|.|.|..|..... +.|.|.+.+
T Consensus       164 ~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P  204 (212)
T 2v9r_A          164 GGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERP  204 (212)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             CCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCc
Confidence            4589999999999999999999999987554 788887543

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A

Probab=99.88  E-value=8.7e-22  Score=183.19  Aligned_cols=186  Identities=24%  Similarity=0.307  Sum_probs=144.0

Q ss_pred             CCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEe------------eeeceEEEecCCC
Q psy15127        411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHR------------ITSTSITVSDLKP  478 (633)
Q Consensus       411 ~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~------------~~~~~~~i~~L~p  478 (633)
                      .+|..+.+...+.+++.|+|.++...   ++++.+|.|+|+..+....|......            .....+++.+|.|
T Consensus         3 ~pP~~~~~~~~~~~sv~l~W~~p~~~---~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p   79 (214)
T 2ibg_A            3 YPPTPPNVTRLSDESVMLRWMVPRND---GLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKP   79 (214)
T ss_dssp             CCCCCCEEEEEETTEEEEEEEEECCS---SCCEEEEEEEEEESSSSCCCEECSCCEECCSSSCSSSSEEEEEEEECSCCT
T ss_pred             CCCCCCEeeEecCCEEEEEEECCCCC---CCCceEEEEEEEECCCCCcCcccccccCccccccccccCcceeEEecCCcC
Confidence            46778888889999999999998854   47899999999987655677654321            3456889999999


Q ss_pred             CCeEEEEEEEEeccccCCCCCCCCceeecCCC----CCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCC
Q psy15127        479 DTSYMFIVRAENSHGLGIPSPVSPITRTLGLN----SLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSV  554 (633)
Q Consensus       479 ~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~  554 (633)
                      ++.|.|+|+|.|..|.|..+.....+.+....    |.+|..+                .+..++.++|.|+|++|    
T Consensus        80 ~t~Y~~~V~A~n~~g~~~~s~~s~~~~~~~~~~~~~~~~P~~~----------------~~~~~~~~sv~l~W~~p----  139 (214)
T 2ibg_A           80 QHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELL----------------EIEEYSETAVVLHWSLA----  139 (214)
T ss_dssp             TCEEEEEEEEEETTSCEEECCCCCCEECCCSTTSCCCCCCEEC----------------CCBCCSSSCEEEEEECC----
T ss_pred             CCEEEEEEEEEecCCCCCCCCCcccEEeccCcCCCCCCCCccc----------------EEEEccCCeEEEEEeCC----
Confidence            99999999999999998877654344544432    2233333                67788899999999954    


Q ss_pred             cccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        555 PQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       555 p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                        . ...++.+.+| .|+|+..+...      .|....   + .....++++|.+|+|++.|.|+|+|.|..|.|++|+
T Consensus       140 --~-~~~~~~i~~Y-~v~~~~~~~~~------~~~~~~---~-~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  204 (214)
T 2ibg_A          140 --S-DADEHLITGY-YAYYRPSSSAG------EYFKAT---I-EGAHARSFKIAPLETATMYEFKLQSFSAASASEFSA  204 (214)
T ss_dssp             --T-TCCGGGCCEE-EEEEEETTCCS------CCEEEE---E-ECTTCCEEEECSCCTTCEEEEEEEEECSSCBCCCCC
T ss_pred             --C-ccCCCCcceE-EEEEEECCCCc------ceEEee---c-cCCcceEEEeCCCCCCCEEEEEEEEEcCCccCCCcc
Confidence              2 3578999999 99999877622      254321   1 223468999999999999999999999999999985

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.88  E-value=1.3e-21  Score=179.22  Aligned_cols=173  Identities=25%  Similarity=0.404  Sum_probs=132.5

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEe-ccCCCeEEEEeCCccCCCCC---eEE--cc--------cceEEEccCCCCCCe
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKMPTGR---AKI--LD--------DRSLQIENVGPQDEG  136 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~-~~p~p~i~W~~~~~~i~~~~---~~~--~~--------~~~L~i~~v~~~d~G  136 (633)
                      +|.|+..|.+..+.+|+.+.|.|.+. +.|.+.+.|+|++..+....   ...  ..        .+.|.|.+++.+|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            68899999999999999999999998 89999999999999887552   111  11        358999999999999


Q ss_pred             EEEEEEEeCCceE-EEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCC-eEEEEECCEEeccCCCeeEEec
Q psy15127        137 LYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKSLDLS  214 (633)
Q Consensus       137 ~Y~C~~~n~~g~~-s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~  214 (633)
                      .|+|.+.+..+.. +..+.|.|..+ |.+...+....+.+|+.+.|.|. ..+.|.+ .+.|++++..+....       
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V~~~-p~~~~~~~~~~~~~g~~~~l~C~-~~g~p~p~~v~W~~~~~~~~~~~-------  152 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGLEGL-PYFLEEPEDRTVAANTPFNLSCQ-AQGPPEPVDLLWLQDAVPLATAP-------  152 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECCS-CEEEECCCCEEECTTCCEEEEEE-EECSSCCCEEEEEESSCBSSSST-------
T ss_pred             EEEEEEEeCCCceecccEEEEEecC-CeEEcCCCcEEEcCCCEEEEEeE-CCCCCCCCEEEEEECCEeccCCC-------
Confidence            9999999987764 34488888877 77666666666777777777777 3555655 666666554332110       


Q ss_pred             cceeeeEEEeeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEE
Q psy15127        215 RRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV  294 (633)
Q Consensus       215 ~~~~~~~~~~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~  294 (633)
                                                                                                 ..   
T Consensus       153 ---------------------------------------------------------------------------~~---  154 (195)
T 2c5d_C          153 ---------------------------------------------------------------------------GH---  154 (195)
T ss_dssp             ---------------------------------------------------------------------------TS---
T ss_pred             ---------------------------------------------------------------------------Cc---
Confidence                                                                                       00   


Q ss_pred             ccCceEEEcCCCCCCCeEEEEEEEeCCceeE-EEEEEEE
Q psy15127        295 TQEGTLRIQGVQKEDAGFFVCSALSVAGSTT-VRAFLQV  332 (633)
Q Consensus       295 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v  332 (633)
                      ..++.|.|.+++  |+|.|+|.|.|..|... ..+.|.|
T Consensus       155 ~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          155 GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            234578898887  78999999999999885 6888877

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.88  E-value=9.5e-25  Score=226.80  Aligned_cols=250  Identities=14%  Similarity=0.145  Sum_probs=158.6

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCC--ccC------------------CCCCeEEcc-----cceEEE
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDD--GKM------------------PTGRAKILD-----DRSLQI  127 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~--~~i------------------~~~~~~~~~-----~~~L~i  127 (633)
                      +..+..+.+.+|++++|.|.+.+.+  .+.|.|+|++  ..+                  ..+++....     ...|.|
T Consensus         3 l~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   82 (434)
T 1igy_B            3 LQESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHL   82 (434)
T ss_dssp             EECCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEE
T ss_pred             eECCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEE
Confidence            3556778899999999999998764  6689999963  221                  023444332     247999


Q ss_pred             ccCCCCCCeEEEEEEEeCCceEEEEEEEEEEee---ccccccCCCceEEecCCcEEEEEeCCCCCCCC-eEEEEECCEEe
Q psy15127        128 ENVGPQDEGLYICDVENLVGSISLRASLTVHLL---RDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFI  203 (633)
Q Consensus       128 ~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~~~~~  203 (633)
                      .+++.+|+|.|+|.+.|..+.....+.|.|...   +|.+...+....+.+|+.+.|.|.+....|.+ .|.|++++..+
T Consensus        83 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~  162 (434)
T 1igy_B           83 SSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS  162 (434)
T ss_dssp             CSBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCS
T ss_pred             CCCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCC
Confidence            999999999999999886544445567777631   24333222223457899999999954334776 99999998753


Q ss_pred             ccCCCeeEEe-----ccceeeeEEE---eeeEEEEeecCCCCCCccc-c--------------cccceeE--------Ee
Q psy15127        204 DLESSKSLDL-----SRRTLGWLRV---RPLYWNVARPRANLNPRYI-G--------------RKMASLL--------IW  252 (633)
Q Consensus       204 ~~~~~~~~~~-----~~~~~~~~~~---~g~y~C~a~~~~~~~p~~~-~--------------~~~~~~~--------~~  252 (633)
                      ..........     ....+.+...   .|.|+|.|.|..+...... .              .......        .+
T Consensus       163 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~dg~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v  242 (434)
T 1igy_B          163 GVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTL  242 (434)
T ss_dssp             SEEECCCEECSSCEEEEEEEEEETTTTTSSCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHH
T ss_pred             CeEecCceecCCcEEEEEEEEEcchhcCCCcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhc
Confidence            2110000000     0011222211   1899999999877532100 0              0001111        15


Q ss_pred             cCCceEEEEEEEeeec----CCeeEEEECCEEEEeccCCccceE---EEccCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127        253 NHPRVNRLSCFAEGSP----LPSVFWTQEGSQVLMFPGNAYGHL---HVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       253 ~~g~~~~l~C~~~g~p----~~~v~W~~~g~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                      ..|+.++|.|.+.|.+    .+.+.|+++|..+...........   .....+.|.|..+..+|.|.|+|.|.|..|..
T Consensus       243 ~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  321 (434)
T 1igy_B          243 LITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPA  321 (434)
T ss_dssp             STTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSS
T ss_pred             ccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCC
Confidence            6789999999999984    358999999976532110000000   01123479999999999999999999988754

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.88  E-value=7.4e-22  Score=183.34  Aligned_cols=189  Identities=22%  Similarity=0.371  Sum_probs=142.7

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccC------------CCCCeEEcccceEEEccCCCCCCeEE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM------------PTGRAKILDDRSLQIENVGPQDEGLY  138 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i------------~~~~~~~~~~~~L~i~~v~~~d~G~Y  138 (633)
                      |+.+...+..+.+.+|+.+.|.|.+.+.|.+.+.|+|++..+            ....+....+..|.|.+++.+|+|.|
T Consensus         1 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y   80 (212)
T 1f97_A            1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEY   80 (212)
T ss_dssp             CCEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEE
T ss_pred             CceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEE
Confidence            356777888999999999999999998899999999988763            11222333448999999999999999


Q ss_pred             EEEEEeCCc--eEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCE-EeccCCCeeEEecc
Q psy15127        139 ICDVENLVG--SISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ-FIDLESSKSLDLSR  215 (633)
Q Consensus       139 ~C~~~n~~g--~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~-~~~~~~~~~~~~~~  215 (633)
                      +|.+.+..|  ..+..+.|.|..+ |.+...+....+.+|+.+.|.|.+..+.|.+.+.|++++. .+..........  
T Consensus        81 ~C~~~~~~g~~~~~~~~~l~V~~~-p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~--  157 (212)
T 1f97_A           81 TCMVSEEGGQNYGEVSIHLTVLVP-PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAF--  157 (212)
T ss_dssp             EEEEEETTSSSEEEEEEEEEEEBC-CCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSC--
T ss_pred             EEEEEccCCCcccEEEEEEEEEcC-CCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccc--
Confidence            999999876  5678888999887 6655555556789999999999966889999999999987 554321110000  


Q ss_pred             ceeeeEEEeeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEE-
Q psy15127        216 RTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV-  294 (633)
Q Consensus       216 ~~~~~~~~~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~-  294 (633)
                                                                                              ...+... 
T Consensus       158 ------------------------------------------------------------------------~~~~~~~~  165 (212)
T 1f97_A          158 ------------------------------------------------------------------------MNSSFTID  165 (212)
T ss_dssp             ------------------------------------------------------------------------SSSCEEEC
T ss_pred             ------------------------------------------------------------------------cCceeEec
Confidence                                                                                    0011111 


Q ss_pred             ccCceEEEcCCCCCCCeEEEEEEEeCCcee--EEEEEEEEEe
Q psy15127        295 TQEGTLRIQGVQKEDAGFFVCSALSVAGST--TVRAFLQVRE  334 (633)
Q Consensus       295 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~  334 (633)
                      ...+.|.|.++..+|.|.|+|.|.|..|..  +..+.|.|.+
T Consensus       166 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          166 PKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             TTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             CCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence            235689999999999999999999999988  4556666653

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.88  E-value=1.9e-21  Score=204.21  Aligned_cols=279  Identities=13%  Similarity=0.082  Sum_probs=168.3

Q ss_pred             CceEEee-----CceEEEcCCCC--CCeEEEEEEecC----------------------cCCeeeeCCCceEEEcCCeEE
Q psy15127         40 RRSRSIF-----GSVLGARGALS--DDQWKLIAKEAL----------------------IKPFPISEPSDATVLSGSVVE   90 (633)
Q Consensus        40 ~~~~~~~-----~~~L~i~~v~~--~G~Y~C~a~~v~----------------------~~p~~~~~~~~~~~~~G~~~~   90 (633)
                      .|+.+..     +.+|.|.+++.  +|.|+|.+.+..                      .+|.+...+.. .+.+|+.++
T Consensus        67 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~g~~v~  145 (475)
T 1iga_A           67 GRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLC-STQPDGNVV  145 (475)
T ss_pred             CceEEEEcCCCCeEEEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCcc-ccCCCCeEE
Confidence            4666543     24799999998  999999997621                      12333222211 225899999


Q ss_pred             EEEEEecc-CC-C-eEEEEeCCccCCCC--C-------eEEcccceEEEccCCCCCCeEEEEEEEeCCce-EEEEEEEEE
Q psy15127         91 FVCRVGGD-PL-P-TILWRRDDGKMPTG--R-------AKILDDRSLQIENVGPQDEGLYICDVENLVGS-ISLRASLTV  157 (633)
Q Consensus        91 L~C~~~~~-p~-p-~i~W~~~~~~i~~~--~-------~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~s~~~~l~V  157 (633)
                      |.|.+.|. |. + .|.|++++......  .       ......+.|.|.+++.+|+|.|+|.|.|..+. .+..+.|.|
T Consensus       146 L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V  225 (475)
T 1iga_A          146 IACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPV  225 (475)
T ss_pred             EEEEEeeecCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEeccc
Confidence            99999986 65 5 89999988543110  0       01111236889999999999999999998764 233344333


Q ss_pred             Ee-----------------ecccc-ccCCCceEEecCCcEEEEEeCCCCCCC---CeEEEEECCEEeccCCCe-eEEe--
Q psy15127        158 HL-----------------LRDDF-RAEPKDTRVASGETALLECGPPKGQPE---PTLHWKKNGQFIDLESSK-SLDL--  213 (633)
Q Consensus       158 ~~-----------------~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~~p~---~~i~W~~~~~~~~~~~~~-~~~~--  213 (633)
                      ..                 .+|.+ ...|....+.+|+.+.|.|.+ .|.++   +.|.|  ++..+...... ....  
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~-~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~  302 (475)
T 1iga_A          226 PSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTL-TGLRDASGVTFTW--TPSSGKSAVQGPPERDLC  302 (475)
T ss_pred             ccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEE-EcccCCCceEEEE--CCCCcCCccccCceECCC
Confidence            11                 11333 333333446899999999995 45433   69999  44433221110 0000  


Q ss_pred             ----ccceeeeE----EEeeeEEEEeecCCCCCCcc-cc-----cccceeE-------EecCCceEEEEEEEeeecC--C
Q psy15127        214 ----SRRTLGWL----RVRPLYWNVARPRANLNPRY-IG-----RKMASLL-------IWNHPRVNRLSCFAEGSPL--P  270 (633)
Q Consensus       214 ----~~~~~~~~----~~~g~y~C~a~~~~~~~p~~-~~-----~~~~~~~-------~~~~g~~~~l~C~~~g~p~--~  270 (633)
                          ....+.+.    ...|.|+|.|.|..+..... ..     ...+...       .+..|+.+.|.|.+.|.++  +
T Consensus       303 g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~  382 (475)
T 1iga_A          303 GCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDV  382 (475)
T ss_pred             CCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCC
Confidence                11122222    22489999999987754210 00     1111111       1346788999999999744  4


Q ss_pred             eeEEEECCEEEEeccCCccceEEEc---c------CceEEEcCCCCCCCeEEEEEEEeCCce
Q psy15127        271 SVFWTQEGSQVLMFPGNAYGHLHVT---Q------EGTLRIQGVQKEDAGFFVCSALSVAGS  323 (633)
Q Consensus       271 ~v~W~~~g~~~~~~~~~~~~~~~~~---~------~~~l~i~~~~~~d~G~Y~C~a~n~~g~  323 (633)
                      .|.|+++|..+..... ........   .      .+.|.|.....+|.|.|+|.|.|....
T Consensus       383 ~v~W~k~g~~l~~~~~-~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~  443 (475)
T 1iga_A          383 LVRWLQGSQELPREKY-LTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  443 (475)
T ss_pred             EEEEEECCEECCCCce-eecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence            9999999987642110 00000111   1      235778888888999999999997543

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.88  E-value=6e-21  Score=188.16  Aligned_cols=269  Identities=17%  Similarity=0.184  Sum_probs=179.3

Q ss_pred             eEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccC--ceEEEcCCCCCCCeEEEEEEEeCCceeEE
Q psy15127        249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE--GTLRIQGVQKEDAGFFVCSALSVAGSTTV  326 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  326 (633)
                      ...+..|+.++|.|.+.|.|.+.+.|+++|..+....  ...++....+  ..|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus        13 ~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~   90 (305)
T 2nzi_A           13 NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG--LKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG   90 (305)
T ss_dssp             CEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCS--SSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTEEEEE
T ss_pred             ceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCC--CeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCCCccc
Confidence            4667889999999999999999999999998874211  1111222222  38999999999999999999999999888


Q ss_pred             EEEEEEEecccCCCceEEeCCCccccCCCCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCC
Q psy15127        327 RAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDS  406 (633)
Q Consensus       327 ~~~l~v~~~~~~p~p~~~~~~~~~~~g~p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~  406 (633)
                      .+.|.|...+....+.....+..            ..+...+.-.+.|.+.                             
T Consensus        91 ~~~l~V~~~p~~~~~~~~~~~~~------------~~~~~g~~~~l~C~~~-----------------------------  129 (305)
T 2nzi_A           91 TASLEVEVPAKIHLPKTLEGMGA------------VHALRGEVVSIKIPFS-----------------------------  129 (305)
T ss_dssp             EEEEEECEEEEECCCHHHHSSCC------------EEEETTCCEEEEEEEE-----------------------------
T ss_pred             eEEEEEecCCccCCCcccccccc------------EEecCCCEEEEEEEEC-----------------------------
Confidence            88888875433222111000000            0111223334444431                             


Q ss_pred             CCCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEec-CCCCCeEEEE
Q psy15127        407 GLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSD-LKPDTSYMFI  485 (633)
Q Consensus       407 ~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~-L~p~~~Y~~~  485 (633)
                                     ......+.|......      +.          ....... ........+.|.+ +.+.+.|.|+
T Consensus       130 ---------------g~p~p~i~W~~~~~~------~~----------~~~~~~~-~~~~~~~~l~i~~~~~~~d~G~Y~  177 (305)
T 2nzi_A          130 ---------------GKPDPVITWQKGQDL------ID----------NNGHYQV-IVTRSFTSLVFPNGVERKDAGFYV  177 (305)
T ss_dssp             ---------------EESCCEEEEEESSSB------CC----------SSSSCEE-EECSSEEEEEETTCCCSTTCEEEE
T ss_pred             ---------------CCCCCEEEEEECCEE------CC----------CCCcEEE-EEcCCceEEEEecCCccCccEEEE
Confidence                           111235667653321      10          0011110 1112345788888 9999999999


Q ss_pred             EEEEeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhh
Q psy15127        486 VRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARAR  565 (633)
Q Consensus       486 v~a~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i  565 (633)
                      |.|.|..|....+..    ......|.+|...                .+..+..+++.|+|.+|       ..+++..+
T Consensus       178 C~a~N~~G~~~~~~~----l~v~~~P~~p~~~----------------~~~~~~~~~v~l~w~~p-------~~~g~~~i  230 (305)
T 2nzi_A          178 VCAKNRFGIDQKTVE----LDVADVPDPPRGV----------------KVSDVSRDSVNLTWTEP-------ASDGGSKI  230 (305)
T ss_dssp             EEEEETTEEEEEEEE----EEEEBCCCCCEEE----------------EEESCCSSCEEEEEECC-------SCCSBSCE
T ss_pred             EEEEeCCCceeeEEE----EEEecCCCCCCCc----------------eeeeccCCEEEEEEcCC-------ccCCCCce
Confidence            999999998754322    2233455555544                67778899999999954       12456689


Q ss_pred             cceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        566 LGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       566 ~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      ..| .++|+.....       .|......      ....++|.+|.+++.|.|+++|.|..|.|.+|+
T Consensus       231 ~~y-~v~~~~~~~~-------~w~~~~~~------~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~  284 (305)
T 2nzi_A          231 TNY-IVEKCATTAE-------RWLRVGQA------RETRYTVINLFGKTSYQFRVIAENKFGLSKPSE  284 (305)
T ss_dssp             EEE-EEEEEETTSC-------CEEEEEEE------SSSEEEECSCCSSCEEEEEEEEEETTEECCCCC
T ss_pred             eEE-EEEEecCCCC-------ccEECccc------cCceEEecCCCCCCeEEEEEEEEeCCcccCCcC
Confidence            999 9999887654       37654321      267899999999999999999999999999985

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.88  E-value=5e-22  Score=182.81  Aligned_cols=171  Identities=18%  Similarity=0.250  Sum_probs=123.4

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCe-EEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPT-ILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVG  147 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~-i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g  147 (633)
                      ..+|.+...|....+.+|+.++|.|.+.+.|.+. +.|+|+|..+....      +.|.|.+++.+|+|.|+|.+.|.  
T Consensus         5 ~p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~------~~L~i~~v~~~D~G~Y~C~a~n~--   76 (204)
T 3sgj_C            5 LPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA------SSYFIDAATVDDSGEYRCQTQLS--   76 (204)
T ss_dssp             -CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS------SEEEESSCCGGGCEEEEEEETTS--
T ss_pred             CCCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc------cEEEEecccccCCEEEEEEeCCC--
Confidence            3568888888888999999999999999888775 99999998876543      68999999999999999999874  


Q ss_pred             eEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEEeeeE
Q psy15127        148 SISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLY  227 (633)
Q Consensus       148 ~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y  227 (633)
                      ..+..+.|.|..+ |.+...+. ..+.+|+.+.|.|.+..+.|.+.+.|+++|.                          
T Consensus        77 ~~s~~~~l~V~~~-p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~--------------------------  128 (204)
T 3sgj_C           77 TLSDPVQLEVHIG-WLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGK--------------------------  128 (204)
T ss_dssp             BCCCCEEEEEECS-SEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTE--------------------------
T ss_pred             cccccEEEEEecC-ceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCc--------------------------
Confidence            3455677788766 44333333 4556666666666632333444555555544                          


Q ss_pred             EEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCC
Q psy15127        228 WNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQK  307 (633)
Q Consensus       228 ~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  307 (633)
                                                                          .+..          ...++.|.|.++..
T Consensus       129 ----------------------------------------------------~~~~----------~~~~~~L~i~~v~~  146 (204)
T 3sgj_C          129 ----------------------------------------------------GRKY----------FHHNSDFYIPKATL  146 (204)
T ss_dssp             ----------------------------------------------------EEEE----------EEECCCEEESSCCG
T ss_pred             ----------------------------------------------------Eeec----------ccCCceEEECcCCc
Confidence                                                                3310          11245899999999


Q ss_pred             CCCeEEEEEEEeC-CceeEEEEEEEEEeccc
Q psy15127        308 EDAGFFVCSALSV-AGSTTVRAFLQVREFCV  337 (633)
Q Consensus       308 ~d~G~Y~C~a~n~-~g~~~~~~~l~v~~~~~  337 (633)
                      +|+|.|+|.|.|. .+..+..+.|.|.+.+.
T Consensus       147 ~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~  177 (204)
T 3sgj_C          147 KDSGSYFCRGLVGSKNVSSETVQITITQGLA  177 (204)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             ccCEEEEEEEEeCCCceecCcEEEEEeCcCC
Confidence            9999999999994 45556777888876433

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A

Probab=99.88  E-value=5.2e-22  Score=187.31  Aligned_cols=185  Identities=17%  Similarity=0.200  Sum_probs=146.4

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRA  488 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a  488 (633)
                      ++++|..+.+...+.+++.|+|+++.      +.+.+|.|+|+..+...... .......+.++|.+|.|++.|.|+|+|
T Consensus         5 p~~~P~~l~~~~~~~~si~l~W~~p~------g~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~~V~A   77 (234)
T 3f7q_A            5 DLGAPQNPNAKAAGSRKIHFNWLPPS------GKPMGYRVKYWIQGDSESEA-HLLDSKVPSVELTNLYPYCDYEMKVCA   77 (234)
T ss_dssp             CCCCCEEEEEEECSSSCEEEEEECCS------SCCCEEEEEEEETTSCGGGC-EEEEESSSEEEECSCCTTCEEEEEEEE
T ss_pred             CCCCCcceEEEEcCCCEEEEEEECCC------CccceEEEEEEECCCCccce-EEEcCCccEEEECCCCCCCEEEEEEEE
Confidence            45678888888899999999999983      47899999999765433221 123346788999999999999999999


Q ss_pred             EeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcce
Q psy15127        489 ENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGT  568 (633)
Q Consensus       489 ~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y  568 (633)
                      .|..|.|+++... .++|....|.+|..+                ++..++.+++.|+|++|        ...+|.|.+|
T Consensus        78 ~n~~G~g~~s~~~-~~~T~~~~P~~P~~l----------------~~~~~~~~sv~l~W~~p--------~~~~g~i~~Y  132 (234)
T 3f7q_A           78 YGAQGEGPYSSLV-SCRTHQEVPSEPGRL----------------AFNVVSSTVTQLSWAEP--------AETNGEITAY  132 (234)
T ss_dssp             EETTEECCCCCCE-EEECCCCCCCCCCCC----------------EEEECSSSCEEEECCCC--------SCCSSCCCEE
T ss_pred             EeCCCcCCCCCeE-EEEcCCCCCCCCCcc----------------EEEEecCCEEEEEEcCC--------CCCCCceeEE
Confidence            9999999988766 577888888887776                78889999999999955        4567899999


Q ss_pred             eEEEEEEcCCCcccceeeeeeccceeEee-cCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        569 KVVNLRELIPTASTAVRITWEKYNMATVM-NAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       569 ~~i~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                       .|+|+..+.....  ...|.     .+. .....++++|.+|+|++.|.|+|+|.|..|.|++|+
T Consensus       133 -~v~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  190 (234)
T 3f7q_A          133 -EVCYGLVNDDNRP--IGPMK-----KVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPERE  190 (234)
T ss_dssp             -EEEEEEBCTTSCB--SSCCE-----ECCCSCTTCCEEEEECCCTTCCEEEEEEEEETTEECCCEE
T ss_pred             -EEEEEECCCCCCc--cCcce-----EEEecCCcceEEEeCCCCCCCeEEEEEEEECCCccCCCcC
Confidence             9999987655410  01121     121 234568999999999999999999999999999873

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}

Probab=99.88  E-value=1.6e-21  Score=178.88  Aligned_cols=184  Identities=26%  Similarity=0.390  Sum_probs=146.1

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRA  488 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a  488 (633)
                      .|++|..+.+.....+++.|+|.++....  +.++.+|.|+|+..+ ...|...........+++.+|.|++.|.|+|+|
T Consensus         5 ~P~~P~~l~~~~~~~~sv~l~W~~p~~~~--~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a   81 (197)
T 3lpw_A            5 TPGPPQDLKVKEVTKTSVTLTWDPPLLDG--GSKIKNYIVEKREST-RKAYSTVATNCHKTSWKVDQLQEGCSYYFRVLA   81 (197)
T ss_dssp             SCCCCEEEEEEEECSSCEEEEEECCSCCT--TSCCCEEEEEEEETT-CSSCEEEEEEECSSEEEECCCCTTCEEEEEEEE
T ss_pred             CCCCCCCcEEEEecCCEEEEEEcCCccCC--CCcccEEEEEEEECC-CCccEEeecCCCccEEEEcCCCCCCEEEEEEEE
Confidence            36678888888889999999999986442  456999999998765 345665555556789999999999999999999


Q ss_pred             EeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcce
Q psy15127        489 ENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGT  568 (633)
Q Consensus       489 ~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y  568 (633)
                      .|..|.|.++... ...+...+|.+|..+                .+...+.+++.|+|++|      . ...++.+.+|
T Consensus        82 ~~~~g~~~~s~~~-~~~t~~~~p~~p~~~----------------~~~~~~~~~v~l~W~~p------~-~~~~~~i~~Y  137 (197)
T 3lpw_A           82 ENEYGIGLPAETA-ESVKASERPLPPGKI----------------TLMDVTRNSVSLSWEKP------E-HDGGSRILGY  137 (197)
T ss_dssp             EETTEECCCEECS-SCEESCCCCCCCSCE----------------EEEEECSSCEEEEECCC------S-CCTTSCCCEE
T ss_pred             EcCccccCCCCCc-cceecCCCCCCCccc----------------EEEeccCCeEEEEecCC------C-cCCCCcccEE
Confidence            9999999887665 355666667766665                77788899999999954      1 2234589999


Q ss_pred             eEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        569 KVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       569 ~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                       .|+|+..+...       |...      .....++++|.+|++++.|.|+|+|.|..|.|++|+
T Consensus       138 -~v~~~~~~~~~-------~~~~------~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G~s~~S~  188 (197)
T 3lpw_A          138 -IVEMQTKGSDK-------WATC------ATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQ  188 (197)
T ss_dssp             -EEEEEETTCSC-------CEEE------EEESSSEEEECCCCTTCEEEEEEEEEETTEECCCEE
T ss_pred             -EEEEEeCCCCc-------eEEe------ecccccEEEeCCcCCCCEEEEEEEEEeCCccCCCcc
Confidence             99999876543       4432      123578899999999999999999999999999874

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.88  E-value=1.5e-22  Score=185.34  Aligned_cols=120  Identities=15%  Similarity=0.225  Sum_probs=88.7

Q ss_pred             ceEEEcCCeEEEEEE---EeccCCCeEEEEeCCccCCC------------------CCeEE---cccceEEEccCCCCCC
Q psy15127         80 DATVLSGSVVEFVCR---VGGDPLPTILWRRDDGKMPT------------------GRAKI---LDDRSLQIENVGPQDE  135 (633)
Q Consensus        80 ~~~~~~G~~~~L~C~---~~~~p~p~i~W~~~~~~i~~------------------~~~~~---~~~~~L~i~~v~~~d~  135 (633)
                      ++.+..|+.++|.|.   +.+.|.+.|+|+|+|..+..                  ++...   .....|.|.+++.+|+
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            567899999999996   45778999999998764421                  11111   1234799999999999


Q ss_pred             eEEEEEEEeCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCE
Q psy15127        136 GLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ  201 (633)
Q Consensus       136 G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~  201 (633)
                      |.|+|.|.|..|..+..+.|.|..| |.+...+....+.+|+.+.|.|. +.|.|.|.|.|++++.
T Consensus        82 G~Y~C~a~n~~g~~~~~~~l~V~~p-~~~~~~~~~~~v~~g~~~~l~C~-~~G~P~P~v~W~~~~~  145 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTKQEHLSVVKP-LTLSVHSERSQFPDFSVLTVTCT-VNAFPHPHVQWLMPEG  145 (203)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEE-EEEEEEEEECCSSCSCCEEEEEE-EEEESCCEEEECCC--
T ss_pred             eEEEEEEEcCCCcEEEEEEEEecCC-ceeeecceeEEEcCCCEEEEEEE-cCCCCCCEEEEEECCe
Confidence            9999999999999999999999887 66666666666666777777776 3556666666655443

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.88  E-value=3.8e-22  Score=197.45  Aligned_cols=221  Identities=14%  Similarity=0.102  Sum_probs=153.7

Q ss_pred             cCCCCCCCCCCccccccceeeEEEEecccCCCCCceEEeeC---ceEEEcCCCC--CCeEEEEEEe-----------cCc
Q psy15127          7 TNHAHPMSSPRAEIEPATRTNRVSISGDPGFDSRRSRSIFG---SVLGARGALS--DDQWKLIAKE-----------ALI   70 (633)
Q Consensus         7 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~L~i~~v~~--~G~Y~C~a~~-----------v~~   70 (633)
                      +.+.+..+.|.+.|+|       ..+|.+...+.|+.+...   ..|.|.+++.  +|.|+|.|.|           +..
T Consensus        21 l~~~~~~~~p~~~v~W-------~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~s~~l~v~~   93 (312)
T 2y23_A           21 LNFECDKMTPKSEFSW-------SKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEE   93 (312)
T ss_dssp             EEEECSSCCTTCCEEE-------EETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCEEEEECHHH
T ss_pred             EEEEEeCCCCCcEEEE-------EECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEEEEEEEEee
Confidence            3444446678888884       446666666777777654   3899999998  9999999987           111


Q ss_pred             ------------CCeeeeCCC-ceEEEcCCeEEEEEEEe-ccCCCeEEEEeCCccCCCC-CeEEccc-----ceEEEccC
Q psy15127         71 ------------KPFPISEPS-DATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKMPTG-RAKILDD-----RSLQIENV  130 (633)
Q Consensus        71 ------------~p~~~~~~~-~~~~~~G~~~~L~C~~~-~~p~p~i~W~~~~~~i~~~-~~~~~~~-----~~L~i~~v  130 (633)
                                  +|.+...+. ...+.+|+.+.|.|.+. +.|.+.++|++++..+..+ +..+..+     ..|.|.++
T Consensus        94 ~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~  173 (312)
T 2y23_A           94 LKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKL  173 (312)
T ss_dssp             HHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCC
T ss_pred             eeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccC
Confidence                        555544443 77899999999999998 8899999999999988654 3333322     24999999


Q ss_pred             CCCCCeEEEEEEEeCCceEEEEEEEEEEe--------------------eccccccCCCceEEecCCcEEEEEeCCCCCC
Q psy15127        131 GPQDEGLYICDVENLVGSISLRASLTVHL--------------------LRDDFRAEPKDTRVASGETALLECGPPKGQP  190 (633)
Q Consensus       131 ~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~--------------------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p  190 (633)
                      +.+|+|.|+|.+.+.....  ...+.+..                    .+|.+.. +....+.+|+.+.|.|. ..+.|
T Consensus       174 ~~~d~G~Y~C~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~v~~G~~~~l~C~-~~~~p  249 (312)
T 2y23_A          174 QDEDEGTYTFQLQDGKATN--HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE-YLSWEVTGECNVLLKCK-VANIK  249 (312)
T ss_dssp             CGGGCEEEEEEEESSSCEE--EEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEE-EEEEEEETTTEEEEEEE-EESCC
T ss_pred             CcccCEeEEEEEEeCCceE--EEEEEEcchhhhhhcccccccccchhhccCCceee-cceEEEeCCCEEEEEEE-EcCCC
Confidence            9999999999998754443  33333311                    1122221 12357889999999999 57888


Q ss_pred             CC-eEEEEECCEEeccCCCeeEEeccceeeeEEE----eeeEEEEeecCCCCC
Q psy15127        191 EP-TLHWKKNGQFIDLESSKSLDLSRRTLGWLRV----RPLYWNVARPRANLN  238 (633)
Q Consensus       191 ~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~y~C~a~~~~~~~  238 (633)
                      .+ .+.|++++..+.......+......|.+..+    .|.|+|.|.|..+..
T Consensus       250 ~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~  302 (312)
T 2y23_A          250 KETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKD  302 (312)
T ss_dssp             SSCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEEEEEEEESTTCCE
T ss_pred             CCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCce
Confidence            77 9999999999875433322211123332222    489999999998743

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.88  E-value=4.2e-22  Score=198.60  Aligned_cols=212  Identities=17%  Similarity=0.136  Sum_probs=147.0

Q ss_pred             CCCccccccceeeEEEEecccCCCCCceEEeeCceEEEcCCCC--CC-eEEEEEEe-------------cCcCCeeeeCC
Q psy15127         15 SPRAEIEPATRTNRVSISGDPGFDSRRSRSIFGSVLGARGALS--DD-QWKLIAKE-------------ALIKPFPISEP   78 (633)
Q Consensus        15 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~--~G-~Y~C~a~~-------------v~~~p~~~~~~   78 (633)
                      +|.+.|+|+.       +|.+.....+.  ..+++|.|.+++.  +| .|+|.|.|             +..+|.+...+
T Consensus        65 ~p~~~v~W~k-------~~~~~~~~~~~--~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~~~  135 (329)
T 3oq3_B           65 DKDNVVNWEK-------IGKTRRPLNRR--VKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPET  135 (329)
T ss_dssp             CTTCEEEEEE-------CSSSCEECSTT--EETTEEEESSCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSCEEEE
T ss_pred             CCCCeeEEEE-------CCCCccccCce--eecceEEEcCCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcEeccc
Confidence            4666788544       33333222333  4578999999998  99 99999998             12233333333


Q ss_pred             CceEEEcCCeEEEEEEEeccC-CCeEEEEeCCccCCC-CCeEEcccceEEEccCCCCCCeEEEEEEEeC--Cce----EE
Q psy15127         79 SDATVLSGSVVEFVCRVGGDP-LPTILWRRDDGKMPT-GRAKILDDRSLQIENVGPQDEGLYICDVENL--VGS----IS  150 (633)
Q Consensus        79 ~~~~~~~G~~~~L~C~~~~~p-~p~i~W~~~~~~i~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~--~g~----~s  150 (633)
                      ....+.+|+.+.|.|.+.+.| .+.++|+|++..+.. +......++.|.|.+++.+|+|.|+|.|.|.  .|.    .+
T Consensus       136 ~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s  215 (329)
T 3oq3_B          136 YELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVS  215 (329)
T ss_dssp             EETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEE
T ss_pred             cceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEE
Confidence            333456799999999999999 899999999998853 2233333689999999999999999999986  544    34


Q ss_pred             EEEEEEEEeecc---ccccCCCceEEecCCcEEEEEeCCCCCC---CC-eEEEEECCEEeccCCCeeEEe-------ccc
Q psy15127        151 LRASLTVHLLRD---DFRAEPKDTRVASGETALLECGPPKGQP---EP-TLHWKKNGQFIDLESSKSLDL-------SRR  216 (633)
Q Consensus       151 ~~~~l~V~~~~p---~~~~~~~~~~~~~g~~~~l~C~~~~~~p---~~-~i~W~~~~~~~~~~~~~~~~~-------~~~  216 (633)
                      ..+.|.|..++.   .+. .+....+.+|+.+.|.|. +.+.|   .+ .+.|+++|..+..........       ...
T Consensus       216 ~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~~l~C~-~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~  293 (329)
T 3oq3_B          216 RCKILTVIPSQDHRFKLI-LDPKINVTIGEPANITCT-AVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEA  293 (329)
T ss_dssp             EEEEEEEECCCCCCEEEE-CCSEEEECTTSCEEEEEE-EEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEE
T ss_pred             eeEEEEEECCCCCCCcee-cCCeeEEecCCCEEEEEE-EEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEe
Confidence            457788887631   222 666788999999999999 56666   67 899999998753322211111       112


Q ss_pred             eeeeEEE----ee-eEEEEeecCCCC
Q psy15127        217 TLGWLRV----RP-LYWNVARPRANL  237 (633)
Q Consensus       217 ~~~~~~~----~g-~y~C~a~~~~~~  237 (633)
                      .|.+..+    .| .|+|.|.|..+.
T Consensus       294 ~L~I~~v~~~D~G~~Y~C~a~N~~G~  319 (329)
T 3oq3_B          294 TLYFENVTEEYIGNTYTCRGHNYYFD  319 (329)
T ss_dssp             EEEESSCCGGGTTCEEEEEEECSSCE
T ss_pred             EEEEEeccHHHCCCcEEEEEEecCCc
Confidence            2222222    38 999999998774

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.87  E-value=1.1e-22  Score=204.31  Aligned_cols=244  Identities=16%  Similarity=0.227  Sum_probs=153.0

Q ss_pred             eCCCceEEEcCCeEEEEEEEecc--CCCeEEEEeC--CccC------------------CCCCeEEcc-----cceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGD--PLPTILWRRD--DGKM------------------PTGRAKILD-----DRSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~--p~p~i~W~~~--~~~i------------------~~~~~~~~~-----~~~L~i~  128 (633)
                      ..|..+.+.+|++++|.|.+.+.  +.+.|.|+|+  +..+                  ..++..+..     ..+|.|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (344)
T 1za6_B            5 VQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELS   84 (344)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             eCCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEEC
Confidence            45667889999999999999876  3678999996  3322                  123444432     2489999


Q ss_pred             cCCCCCCeEEEEEEEeCCceEEEEEEEEEEee---ccccccCCCceEEecCCcEEEEEeCCCCCCC-CeEEEEECCEEec
Q psy15127        129 NVGPQDEGLYICDVENLVGSISLRASLTVHLL---RDDFRAEPKDTRVASGETALLECGPPKGQPE-PTLHWKKNGQFID  204 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~i~W~~~~~~~~  204 (633)
                      +++.+|+|.|+|.|.|..+.....+.|.|...   +|.+...+....+.+|+.+.|.|.+....|. +.|.|+++|..+.
T Consensus        85 ~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~  164 (344)
T 1za6_B           85 SLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSG  164 (344)
T ss_dssp             SCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTT
T ss_pred             CCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCc
Confidence            99999999999999986655555677888742   2333333323345789999999995433465 7999999987532


Q ss_pred             cCCCeeEEecc------ceeeeEEE---eeeEEEEeecCCCCCCc---c------------------------cccccce
Q psy15127        205 LESSKSLDLSR------RTLGWLRV---RPLYWNVARPRANLNPR---Y------------------------IGRKMAS  248 (633)
Q Consensus       205 ~~~~~~~~~~~------~~~~~~~~---~g~y~C~a~~~~~~~p~---~------------------------~~~~~~~  248 (633)
                      ...........      ..+.+...   .|.|+|.|.|..+....   +                        .....+.
T Consensus       165 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~dG~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~  244 (344)
T 1za6_B          165 VHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQ  244 (344)
T ss_dssp             EEECCCEECTTSCEEEEEEEEEETTHHHHBCEEEEEEEGGGTEEEEEEECCCCC--------------------CCBCCE
T ss_pred             eeECCCeECCCCCEEEEEEEEEcHHHcCCCcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcCCE
Confidence            11000000011      12222211   28999999987663110   0                        0001111


Q ss_pred             eEEe------cCCceEEEEEEEeeecC--CeeEEEECCEEEEeccCCccceEEEccCc------eEEEcCCCCCCCeEEE
Q psy15127        249 LLIW------NHPRVNRLSCFAEGSPL--PSVFWTQEGSQVLMFPGNAYGHLHVTQEG------TLRIQGVQKEDAGFFV  314 (633)
Q Consensus       249 ~~~~------~~g~~~~l~C~~~g~p~--~~v~W~~~g~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~G~Y~  314 (633)
                      ..+.      ..|+.++|.|.+.|.++  +.+.|+++|..+....   ..+.....++      .|.|.....+|.|.|+
T Consensus       245 v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~---~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~Yt  321 (344)
T 1za6_B          245 VYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYK---TTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFS  321 (344)
T ss_dssp             EEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEE---ECCCEECTTSCEEEEEEEEECHHHHHTTCEEE
T ss_pred             EEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcE---ecceEECCCCcEEEEEEEEEChHHccCCCeEE
Confidence            1111      13566999999999644  5899999998663110   0111122232      3566666667799999


Q ss_pred             EEEEeCCc
Q psy15127        315 CSALSVAG  322 (633)
Q Consensus       315 C~a~n~~g  322 (633)
                      |.|.|...
T Consensus       322 C~a~~~~l  329 (344)
T 1za6_B          322 CSVMHEAL  329 (344)
T ss_dssp             EEEECTTS
T ss_pred             EEEEcCCC
Confidence            99999754

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.87  E-value=2.3e-21  Score=182.63  Aligned_cols=198  Identities=24%  Similarity=0.403  Sum_probs=147.0

Q ss_pred             cCcCCeeeeCC----CceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCC-----eEEcccceEEEccCCCCCCeEE
Q psy15127         68 ALIKPFPISEP----SDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR-----AKILDDRSLQIENVGPQDEGLY  138 (633)
Q Consensus        68 v~~~p~~~~~~----~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~-----~~~~~~~~L~i~~v~~~d~G~Y  138 (633)
                      ...+|.|...+    ....+.+|+.+.|.|.+.+.|.+.+.|+|++..+....     ........|.|.+++.+|+|.|
T Consensus        12 ~~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y   91 (231)
T 3ojm_B           12 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNY   91 (231)
T ss_dssp             -CEEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEE
T ss_pred             CccCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEE
Confidence            34567776555    77889999999999999999999999999999875321     2333456899999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEEeec---cccc-cCCCceEEecCCcEEEEEeCCCCCCCCeEEEEE----CCEEeccCCCee
Q psy15127        139 ICDVENLVGSISLRASLTVHLLR---DDFR-AEPKDTRVASGETALLECGPPKGQPEPTLHWKK----NGQFIDLESSKS  210 (633)
Q Consensus       139 ~C~~~n~~g~~s~~~~l~V~~~~---p~~~-~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~----~~~~~~~~~~~~  210 (633)
                      +|.+.|..+.....+.|.|...+   |.+. ..+....+.+|+.+.|.|. ..+.|.+.+.|++    +|..+.......
T Consensus        92 ~C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~-~~~~p~p~v~W~~~~~~~g~~~~~~~~~~  170 (231)
T 3ojm_B           92 TCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCK-VYSDAQPHIQWIKHVEKNGSKYGPDGLPY  170 (231)
T ss_dssp             EEEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECC-EECSSCCEEEEEEECCBTTBSBCTTSCBC
T ss_pred             EEEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEE-EecCCCCEEEEEECCCCCCccccCCCcce
Confidence            99999999998888899998642   2222 2356678899999999999 5788889999998    555443221111


Q ss_pred             EEeccceeeeEEEeeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccc
Q psy15127        211 LDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYG  290 (633)
Q Consensus       211 ~~~~~~~~~~~~~~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~  290 (633)
                      ...                                                            ...             .
T Consensus       171 ~~~------------------------------------------------------------~~~-------------~  177 (231)
T 3ojm_B          171 LKV------------------------------------------------------------LKH-------------S  177 (231)
T ss_dssp             EEE------------------------------------------------------------EEE-------------C
T ss_pred             EeE------------------------------------------------------------ecc-------------c
Confidence            000                                                            000             0


Q ss_pred             eEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEecccCC
Q psy15127        291 HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLP  339 (633)
Q Consensus       291 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p  339 (633)
                      .......+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|...+..|
T Consensus       178 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p  226 (231)
T 3ojm_B          178 GINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAP  226 (231)
T ss_dssp             STTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC---
T ss_pred             ccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCCC
Confidence            0011134579999999999999999999999999999999998765544

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.87  E-value=2.8e-21  Score=174.77  Aligned_cols=131  Identities=31%  Similarity=0.430  Sum_probs=99.1

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcc------cceEEEccCCCCCCeEEEEEEEe
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD------DRSLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                      +|.|...|..+.+.+|+.+.|.|.+.+.|.+.+.|+|++..+.........      .+.|.|.+++.+|+|.|+|.+.+
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   81 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED   81 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEc
Confidence            577888899999999999999999999999999999999988765322221      25899999999999999999999


Q ss_pred             CCce-EEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCC-eEEEEECCEEe
Q psy15127        145 LVGS-ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFI  203 (633)
Q Consensus       145 ~~g~-~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~~~~~  203 (633)
                      ..+. .+..+.|.|..+ |.+...+....+.+|+.+.|.|. ..+.|.+ .+.|++++..+
T Consensus        82 ~~~~~~~~~~~l~V~~~-p~~~~~~~~~~~~~g~~~~l~C~-~~g~p~p~~v~W~~~~~~~  140 (182)
T 1rhf_A           82 GGETEISQPVWLTVEGV-PFFTVEPKDLAVPPNAPFQLSCE-AVGPPEPVTIVWWRGTTKI  140 (182)
T ss_dssp             CTTCEECCCEEEEEECS-CEEEECCCCEEECTTCCEEEEEE-EECSSSCCEEEEEETTEEC
T ss_pred             CCCcEEEEEEEEEEecC-CeEEecCcceEecCCCEEEEEeE-ecCCCCCCEEEEEcCCeEC
Confidence            8765 567888999887 77776676667777777777777 3555555 66666655433

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.87  E-value=3e-21  Score=180.10  Aligned_cols=191  Identities=21%  Similarity=0.350  Sum_probs=132.7

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceE
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSI  149 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~  149 (633)
                      ..+.|...|..+.+.+|+.+.|.|.+.+.|.+.+.|+|++..+...     .+..|.|.+++.+|+|.|+|.+.|..+..
T Consensus        17 ~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~   91 (218)
T 3k0w_A           17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG-----NTSELIFNAVHVKDAGFYVCRVNNNFTFE   91 (218)
T ss_dssp             --CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC-----CSSEEEETTCCGGGCEEEEEEEECTTCCE
T ss_pred             CCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC-----CCCEEEEccCChhhCeEeEEEEEcCCCCc
Confidence            4578889999999999999999999999999999999999988654     24689999999999999999999987753


Q ss_pred             -EEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEEeeeEE
Q psy15127        150 -SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYW  228 (633)
Q Consensus       150 -s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~  228 (633)
                       +..+.|.|...+..+......  +              ....+.+.-.                               
T Consensus        92 ~s~~~~l~V~~~~~~~~~~~~~--~--------------~~~~p~~~~~-------------------------------  124 (218)
T 3k0w_A           92 FSQWSQLDVCDIPESFQRSVDG--V--------------SESKLQICVE-------------------------------  124 (218)
T ss_dssp             ECCCEEEEEECCCGGGCTTCCS--B--------------CCSSCEEEEC-------------------------------
T ss_pred             eeeEEEEEEEccCccccccccc--c--------------cCCCceEEEC-------------------------------
Confidence             666788887762221100000  0              0000111100                               


Q ss_pred             EEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCC
Q psy15127        229 NVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKE  308 (633)
Q Consensus       229 C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  308 (633)
                                        .....+..|+.+.|.|.+.|.|.+.+.|+++|..+..           .....|.|.++..+
T Consensus       125 ------------------~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~-----------~~~~~L~i~~v~~~  175 (218)
T 3k0w_A          125 ------------------PTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTH-----------ETKKLYMVPYVDLE  175 (218)
T ss_dssp             ------------------CCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTT-----------CCSSEEEESSCCGG
T ss_pred             ------------------CCceeecCCCcEEEEEEecccCCCeEEEEECCEECCC-----------CCCCEEEEeecChh
Confidence                              0011233457777778787888888888888776531           12347999999999


Q ss_pred             CCeEEEEEEEeCCce-eEEEEEEEEEecccCCCc
Q psy15127        309 DAGFFVCSALSVAGS-TTVRAFLQVREFCVLPKG  341 (633)
Q Consensus       309 d~G~Y~C~a~n~~g~-~~~~~~l~v~~~~~~p~p  341 (633)
                      |.|.|+|.|.|..|. .+..+.|.|.+...+..|
T Consensus       176 d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~~~~~P  209 (218)
T 3k0w_A          176 HQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHP  209 (218)
T ss_dssp             GCEEEEEEEECSSCEEECCCEEEEECC-------
T ss_pred             cCEEEEEEEEcCCCCceeeeEEEEEeCCccCCCC
Confidence            999999999999887 566777877764444343

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.87  E-value=2.9e-21  Score=183.36  Aligned_cols=201  Identities=24%  Similarity=0.393  Sum_probs=142.2

Q ss_pred             cCCeeeeC----CCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-----CeEEcccceEEEccCCCCCCeEEEE
Q psy15127         70 IKPFPISE----PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-----RAKILDDRSLQIENVGPQDEGLYIC  140 (633)
Q Consensus        70 ~~p~~~~~----~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-----~~~~~~~~~L~i~~v~~~d~G~Y~C  140 (633)
                      .+|.|+..    +..+.+.+|+.+.|.|.+.+.|.+.+.|+|++..+...     .........|.|.+++.+|+|.|+|
T Consensus        10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C   89 (241)
T 3grw_A           10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC   89 (241)
T ss_dssp             -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred             CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEE
Confidence            35666533    44678999999999999999999999999999987532     1233445789999999999999999


Q ss_pred             EEEeCCceEEEEEEEEEEeecc---c-cccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEE----CCEEeccCCCeeEE
Q psy15127        141 DVENLVGSISLRASLTVHLLRD---D-FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKK----NGQFIDLESSKSLD  212 (633)
Q Consensus       141 ~~~n~~g~~s~~~~l~V~~~~p---~-~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~----~~~~~~~~~~~~~~  212 (633)
                      .+.|..+..+..+.|.|....+   . ....+....+.+|+.+.|.|. ..+.|.+.+.|++    ++..+.........
T Consensus        90 ~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~-~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~  168 (241)
T 3grw_A           90 VVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCK-VYSDAQPHIQWLKHVEVNGSKVGPDGTPYVT  168 (241)
T ss_dssp             EEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEE-EECSSCCEEEEEEECCSSSCSSCTTTCCCEE
T ss_pred             EEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEE-EecCCCCEEEEEEcccCCCcccCCCCceeee
Confidence            9999999888888999886422   2 223456677889999999999 5888999999999    66544322211110


Q ss_pred             eccceeeeEEEeeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceE
Q psy15127        213 LSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHL  292 (633)
Q Consensus       213 ~~~~~~~~~~~~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~  292 (633)
                      ...                                                         .+...               
T Consensus       169 ~~~---------------------------------------------------------~~~~~---------------  176 (241)
T 3grw_A          169 VLK---------------------------------------------------------SWISE---------------  176 (241)
T ss_dssp             EEE---------------------------------------------------------EEECS---------------
T ss_pred             eee---------------------------------------------------------Eeeee---------------
Confidence            000                                                         00000               


Q ss_pred             EEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEecccCCCceE
Q psy15127        293 HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTF  343 (633)
Q Consensus       293 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~p~~  343 (633)
                      .....+.|.|.++..+|.|.|+|.|.|..|..+.++.|.|...+..+...+
T Consensus       177 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~v  227 (241)
T 3grw_A          177 SVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELV  227 (241)
T ss_dssp             BSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC-----------
T ss_pred             ecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCCCccce
Confidence            001234799999999999999999999999999999999987665554433

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.87  E-value=1.5e-21  Score=179.85  Aligned_cols=174  Identities=18%  Similarity=0.232  Sum_probs=113.1

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEe-ccCCCeEEEEeCCccCCCC-CeEEccc-----ceEEEccCCCCCCeEEEEEEE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKMPTG-RAKILDD-----RSLQIENVGPQDEGLYICDVE  143 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~-~~p~p~i~W~~~~~~i~~~-~~~~~~~-----~~L~i~~v~~~d~G~Y~C~~~  143 (633)
                      .|+|.... +..+.+|+.+.|.|.+. +.|.|.|+|+|||.++..+ +..+..+     ..|.|.+++.+|+|.|+|.|.
T Consensus         3 ~p~~~~~~-~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~   81 (207)
T 3rbs_A            3 DPFTKSEL-AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQ   81 (207)
T ss_dssp             ---CCEEE-EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEE
T ss_pred             CCeeecCC-ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEE
Confidence            46665543 67899999999999996 4799999999999998654 3333222     269999999999999999999


Q ss_pred             eCCceEEEEEEEEEEee--------------------ccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEe
Q psy15127        144 NLVGSISLRASLTVHLL--------------------RDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI  203 (633)
Q Consensus       144 n~~g~~s~~~~l~V~~~--------------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~  203 (633)
                      |  |..+....+.+...                    +|.+...+ ...+.+|+.+.|.|.                   
T Consensus        82 N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~-------------------  139 (207)
T 3rbs_A           82 D--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCK-------------------  139 (207)
T ss_dssp             E--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEE-------------------
T ss_pred             C--CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEE-------------------
Confidence            9  44444444332110                    12222211 233444555555554                   


Q ss_pred             ccCCCeeEEeccceeeeEEEeeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeee-cCCeeEEEECCEEEE
Q psy15127        204 DLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGS-PLPSVFWTQEGSQVL  282 (633)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~~v~W~~~g~~~~  282 (633)
                                                                                  +.|. |.|.+.|+|+|..+.
T Consensus       140 ------------------------------------------------------------v~g~~P~p~i~W~k~g~~l~  159 (207)
T 3rbs_A          140 ------------------------------------------------------------VANIKKETHIVWYKDEREIS  159 (207)
T ss_dssp             ------------------------------------------------------------EESCCTTCEEEEEETTEEEC
T ss_pred             ------------------------------------------------------------EeCCCCCCEEEEEECCEECC
Confidence                                                                        4444 445555555554442


Q ss_pred             eccCCccceEEE-ccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127        283 MFPGNAYGHLHV-TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       283 ~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      ..     .++.. ....+|.|.++..+|+|.|+|.|.|..|..+.++.|..
T Consensus       160 ~~-----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          160 VD-----EKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  205 (207)
T ss_dssp             CC-----CCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             CC-----CceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence            10     01111 12236999999999999999999999999999888754

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.86  E-value=2.3e-22  Score=199.92  Aligned_cols=236  Identities=15%  Similarity=0.177  Sum_probs=145.7

Q ss_pred             CeEEEEEEEecc-C-CCeEEEEeCCccCCCCCe---EEccc------ceEEEccCCCCCCeEEEEEEEeCCceEEEEEEE
Q psy15127         87 SVVEFVCRVGGD-P-LPTILWRRDDGKMPTGRA---KILDD------RSLQIENVGPQDEGLYICDVENLVGSISLRASL  155 (633)
Q Consensus        87 ~~~~L~C~~~~~-p-~p~i~W~~~~~~i~~~~~---~~~~~------~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l  155 (633)
                      +.+.|.|.+.+. | .+.|+|+|+|..+..+..   ....+      +.|.|.++..+|+|.|+|.|.|..+.....+.+
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~  104 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKK  104 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEECC
T ss_pred             CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeeec
Confidence            699999999875 4 468999999998864321   11112      357888888889999999999988765544332


Q ss_pred             EEEe--eccc-cccCCCceEEecCCcEEEEEeCCCCCCCC---eEEEEECC-EEeccCCCeeEEecc------ceeeeEE
Q psy15127        156 TVHL--LRDD-FRAEPKDTRVASGETALLECGPPKGQPEP---TLHWKKNG-QFIDLESSKSLDLSR------RTLGWLR  222 (633)
Q Consensus       156 ~V~~--~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~p~~---~i~W~~~~-~~~~~~~~~~~~~~~------~~~~~~~  222 (633)
                      .+..  ..|. +...|....+.+|+++.|.|.+....|.+   .|.|++++ ..+............      ..|.+..
T Consensus       105 ~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~  184 (323)
T 2wqr_A          105 CADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGT  184 (323)
T ss_dssp             CCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCH
T ss_pred             CCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECH
Confidence            1111  1122 23445555678899999999954445666   99999975 433221111100111      1122221


Q ss_pred             ----EeeeEEEEeecCCCCCC-ccccc------ccceeEEe------cCCceEEEEEEEeeecC-C-eeEEEECCEEEEe
Q psy15127        223 ----VRPLYWNVARPRANLNP-RYIGR------KMASLLIW------NHPRVNRLSCFAEGSPL-P-SVFWTQEGSQVLM  283 (633)
Q Consensus       223 ----~~g~y~C~a~~~~~~~p-~~~~~------~~~~~~~~------~~g~~~~l~C~~~g~p~-~-~v~W~~~g~~~~~  283 (633)
                          ..|.|+|.|.|...... .....      ..+...+.      ..|+.++|.|.+.|.++ + .+.|+++|..+..
T Consensus       185 ~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~  264 (323)
T 2wqr_A          185 RDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPD  264 (323)
T ss_dssp             HHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCG
T ss_pred             HHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCC
Confidence                13799999999863221 11110      11111111      12899999999999544 3 8999999987642


Q ss_pred             ccCCccceEEEc------cCceEEEcCCCCCCCeEEEEEEEeCCce
Q psy15127        284 FPGNAYGHLHVT------QEGTLRIQGVQKEDAGFFVCSALSVAGS  323 (633)
Q Consensus       284 ~~~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  323 (633)
                      ... ........      ..+.|.|..+..+|+|.|+|.|.|..+.
T Consensus       265 ~~~-~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          265 ARH-STTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             GGE-EECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             Cce-eecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            100 00000111      1236999999999999999999998765

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A

Probab=99.86  E-value=1.2e-20  Score=184.57  Aligned_cols=214  Identities=14%  Similarity=0.146  Sum_probs=156.2

Q ss_pred             EecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCC
Q psy15127        361 ACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGV  440 (633)
Q Consensus       361 i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~  440 (633)
                      +..+.....|.+++.|.|..|....+ .+.+.....           ..+.++..+..... .+++.|+|.++.     .
T Consensus        65 ~~~l~p~t~Y~~~V~A~n~~G~s~~s-~~~~~~~~~-----------~~~~p~~~~~~~~~-~~si~l~W~~p~-----~  126 (290)
T 3l5i_A           65 LTVNLTNDRYLATLTVRNLVGKSDAA-VLTIPACDF-----------QATHPVMDLKAFPK-DNMLWVEWTTPR-----E  126 (290)
T ss_dssp             EEEEECSSCEEEEEEEEESSCBCCCE-EEEECCTTC-----------CCCCCCEEEEEEEE-TTEEEEEEECCS-----S
T ss_pred             EEEEcCCceEEEEEEEEcCCCCCCCc-eEEeecccc-----------cCCCccceeEEEeC-CCeEEEEEeCCC-----C
Confidence            34555678899999999999976433 222222100           11233334444444 479999999987     2


Q ss_pred             cceeEEEEEEEEecCCC----CeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCceeecCCCCCCCcc
Q psy15127        441 APVIGYTVEYFSSDLQT----GWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQH  516 (633)
Q Consensus       441 ~~i~~Y~v~~~~~~~~~----~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~~p~~~~~  516 (633)
                       .+.+|.|+|+..+...    .|... .......+.+.+|.|++.|.|+|+|.|..|.|... .. ...|....|..++.
T Consensus       127 -~i~~Y~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~g~g~~~-~~-~~~t~~~~P~~~p~  202 (290)
T 3l5i_A          127 -SVKKYILEWCVLSDKAPCITDWQQE-DGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPE-SI-KAYLKQAPPSKGPT  202 (290)
T ss_dssp             -CCCEEEEEEEEECSSSCCCCEEEEE-ETTCSEEECCSCCCTTCEEEEEEEEEETTEECCCE-EE-EEESSCCCCSSCCC
T ss_pred             -CCCcEEEEEEECCCCCCCCcCeEEc-cCCCcceEEecCcCCccEEEEEEEEEeCCcccccE-EE-EeEccccCCCCCCe
Confidence             7899999999875442    35433 23345678889999999999999999999999842 22 35677777877777


Q ss_pred             hHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEe
Q psy15127        517 LLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATV  596 (633)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~  596 (633)
                      +                .+..++.+++.|+|++|    |  ....+|.|++| .|+|+..+...        .     .+
T Consensus       203 ~----------------~~~~~~~~sv~l~W~~~----~--~~~~~g~i~~Y-~v~~~~~~~~~--------~-----~~  246 (290)
T 3l5i_A          203 V----------------RTKKVGKNEAVLEWDQL----P--VDVQNGFIRNY-TIFYRTIIGNE--------T-----AV  246 (290)
T ss_dssp             E----------------EEEEECSSCEEEEECCC----C--HHHHSSCCCEE-EEEEEETTSCC--------E-----EE
T ss_pred             e----------------eEeeccCCEEEEEEcCC----C--hhccCCEEEEE-EEEEEeCCCCe--------E-----EE
Confidence            6                67888999999999932    2  25678999999 99999875432        2     22


Q ss_pred             ecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        597 MNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       597 ~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      ...+..++++|.+|++++.|.|+|+|.|.+| |++|.
T Consensus       247 ~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G-g~~s~  282 (290)
T 3l5i_A          247 NVDSSHTEYTLSSLTSDTLYMVRMAAYTDEG-GKDGP  282 (290)
T ss_dssp             EEETTCSEEEECSCCTTCEEEEEEEEEETTE-EEECC
T ss_pred             EeCCCceEEEeCCCCCCCEEEEEEEEEeCCC-CCCCC
Confidence            2456788999999999999999999999999 77763

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B

Probab=99.86  E-value=3.4e-19  Score=181.13  Aligned_cols=269  Identities=12%  Similarity=0.102  Sum_probs=192.1

Q ss_pred             cCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEecccCCCc-------------eEEeCCCcc--c---------
Q psy15127        296 QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKG-------------TFTLGQPNL--A---------  351 (633)
Q Consensus       296 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~p-------------~~~~~~~~~--~---------  351 (633)
                      ....+.|.++.......|...|.|..|...........   ..|.|             .+.|.+...  .         
T Consensus        57 ~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~~~~~---~~p~p~~l~~~~~~~~si~l~W~~~~~~~i~~Y~v~~~~  133 (375)
T 3t1w_A           57 DQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIP---EVPQLTDLSFVDITDSSIGLRWTPLNSSTIIGYRITVVA  133 (375)
T ss_dssp             TCCEEEECCCCTTCCEEEEEEEEETTEECCCEEEEECC---CCCCCSCCEEECCCSSEEEEECCCCCCTTEEEEEEEEEE
T ss_pred             CccEEEEcCCcCCCEEEEEEEEEcCCCCCCcEEeeEcC---CCCCCceEEEEecCCCeEEEEEECCCCCCceEEEEEEEE
Confidence            34578899999888888888888887754333222222   22222             244544321  0         


Q ss_pred             cCC-----------CCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEE
Q psy15127        352 TGN-----------SDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILN  420 (633)
Q Consensus       352 ~g~-----------p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~  420 (633)
                      .+.           ....+.+.+|.....|.|++.|.|..|....... .....               +.+|..+.+..
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~~-~~~t~---------------~~~p~~l~~~~  197 (375)
T 3t1w_A          134 AGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTL-TQQTA---------------VPPPTDLRFTN  197 (375)
T ss_dssp             SSSCCSCEEEEECTTCCEEEEECCCTTCEEEEEEEEEETTEECCCEEE-EEECC---------------CCCCEEEEEES
T ss_pred             CCCCCceeEEEcCCCcceEEEeCCCCCCEEEEEEEEEeCCcccCCeee-eeecC---------------CCCCceeEEEe
Confidence            011           1234478899999999999999999986543332 22211               23466677777


Q ss_pred             eeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCC
Q psy15127        421 TTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPV  500 (633)
Q Consensus       421 ~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~  500 (633)
                      ...+++.|+|.++.     ++.+.+|.|+|+..+....|...........++|.+|.|++.|.|+|+|.|..|.|.++..
T Consensus       198 ~~~~si~l~W~~p~-----~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~~  272 (375)
T 3t1w_A          198 IGPDTMRVTWAPPP-----SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRG  272 (375)
T ss_dssp             CCSSCEEEEEECCS-----SCCCCEEEEEEEEGGGTTCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEE
T ss_pred             cccCEEEEEEcCCC-----CCCccEEEEEEEeCCCCCCcEEEEcCCCcCEEEeCCCCCCCEEEEEEEEEcCCCcCCceee
Confidence            78899999999985     3678999999998775556665555555689999999999999999999999999876532


Q ss_pred             CCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCc
Q psy15127        501 SPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTA  580 (633)
Q Consensus       501 ~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~  580 (633)
                      .  ..|   .|.+|..+                .+..++.+++.|+|++|           .+.+.+| .|+|+..+...
T Consensus       273 ~--~~t---~p~~P~~l----------------~~~~~~~~sv~l~W~~p-----------~~~~~~Y-~v~~~~~~~~~  319 (375)
T 3t1w_A          273 R--QKT---GLDSPTGI----------------DFSDITANSFTVHWIAP-----------RATITGY-RIRHHPEHFSG  319 (375)
T ss_dssp             E--EEC---CCCCCEEE----------------EEESCCSSCEEEEEECC-----------SSCCSEE-EEEEEETTCCS
T ss_pred             E--Eec---CCCCCCcc----------------EeeeccCCEEEEEECCC-----------CcceeeE-EEEEEECCCCC
Confidence            2  333   34445544                67788899999999943           3789999 99999876522


Q ss_pred             ccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccC
Q psy15127        581 STAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       581 ~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s  632 (633)
                            .|.     ........++++|.+|+|++.|.|+|+|.|..|+|+|.
T Consensus       320 ------~~~-----~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~s~p~  360 (375)
T 3t1w_A          320 ------RPR-----EDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLL  360 (375)
T ss_dssp             ------SCE-----EEEEETTCCEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             ------cce-----eEEcCCCccEEEECCCCCCCEEEEEEEEECCCCCCCce
Confidence                  121     22344668899999999999999999999999999984

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.86  E-value=7.2e-22  Score=197.55  Aligned_cols=225  Identities=20%  Similarity=0.277  Sum_probs=121.3

Q ss_pred             cccCCCCCCCCCCccccccceeeEEEEecccCCCCCceEEeeCceEEEcCCCC--CCeEEEEEEe-----------cCc-
Q psy15127          5 LDTNHAHPMSSPRAEIEPATRTNRVSISGDPGFDSRRSRSIFGSVLGARGALS--DDQWKLIAKE-----------ALI-   70 (633)
Q Consensus         5 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~--~G~Y~C~a~~-----------v~~-   70 (633)
                      +.+.|......|.+.|+|+.       +|.+...+.++.+ .+++|.|.+++.  +|.|+|.|.|           +.. 
T Consensus        26 v~l~C~~~~~~p~~~v~W~k-------~g~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~~~l~V~~~   97 (334)
T 1ry7_B           26 VELSCPPPGGGPMGPTVWVK-------DGTGLVPSERVLV-GPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDA   97 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEeeCCCCCCCcceEEEE-------CCeeCCCcccEEe-ccceEEEeecccccCEEEEEEEEeCCeEEEEEEEEEecc
Confidence            44555555444667888554       3444444455544 457899999998  9999999987           211 


Q ss_pred             ---------------------CCeeeeC----CCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCe-----EEc
Q psy15127         71 ---------------------KPFPISE----PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRA-----KIL  120 (633)
Q Consensus        71 ---------------------~p~~~~~----~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~-----~~~  120 (633)
                                           +|.+...    +....+.+|+.+.|.|.+.|.|.+.+.|+|++..+.....     ...
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~  177 (334)
T 1ry7_B           98 PSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH  177 (334)
T ss_dssp             ---------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCCT
T ss_pred             CccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccceeccc
Confidence                                 3443322    1236788999999999999999999999999988764321     112


Q ss_pred             ccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEeec---ccccc-CCCceEEecCCcEEEEEeCCCCCCCCeEEE
Q psy15127        121 DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLR---DDFRA-EPKDTRVASGETALLECGPPKGQPEPTLHW  196 (633)
Q Consensus       121 ~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~---p~~~~-~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W  196 (633)
                      ....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|...+   |.+.. .+....+.+|+.+.|.|. ..+.|.+.+.|
T Consensus       178 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~-~~g~p~p~v~W  256 (334)
T 1ry7_B          178 QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCK-VYSDAQPHIQW  256 (334)
T ss_dssp             TTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCC-CBCSSCEEEEE
T ss_pred             ceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEE-EecCCCCeEEE
Confidence            34689999999999999999999999998888999998742   22322 356678899999999999 57899999999


Q ss_pred             EE----CCEEeccCCCeeEEecc-----------ceeeeEE----EeeeEEEEeecCCCCC
Q psy15127        197 KK----NGQFIDLESSKSLDLSR-----------RTLGWLR----VRPLYWNVARPRANLN  238 (633)
Q Consensus       197 ~~----~~~~~~~~~~~~~~~~~-----------~~~~~~~----~~g~y~C~a~~~~~~~  238 (633)
                      ++    +|..+............           ..|.+..    ..|.|+|.|.|..+..
T Consensus       257 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  317 (334)
T 1ry7_B          257 LKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFS  317 (334)
T ss_dssp             EECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCE
T ss_pred             EECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeE
Confidence            99    66666543322111100           1233222    2489999999988743

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.86  E-value=4.7e-22  Score=197.26  Aligned_cols=214  Identities=15%  Similarity=0.128  Sum_probs=146.4

Q ss_pred             CCccccccceeeEEEEecccCCCCCceEEee-CceEEEcCCCC--CCeEEEEEEe------------cCcCCeeeeCCCc
Q psy15127         16 PRAEIEPATRTNRVSISGDPGFDSRRSRSIF-GSVLGARGALS--DDQWKLIAKE------------ALIKPFPISEPSD   80 (633)
Q Consensus        16 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~i~~v~~--~G~Y~C~a~~------------v~~~p~~~~~~~~   80 (633)
                      |.+.|+|+.       +|.+...+.++.+.. ++.|.|.+++.  +|.|+|.|.|            +..+|.+...+..
T Consensus        35 p~~~v~W~~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~~~~~  107 (317)
T 2y25_A           35 KETHIVWYK-------DEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCK  107 (317)
T ss_dssp             TTCEEEEEE-------TTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSSCEEEEEECCSTHHHHHHHHHHHH
T ss_pred             CCCEEEEEE-------CCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCCCcEEEEEEEEEecCccccccCCc
Confidence            566777443       344444444444433 35899999999  9999999988            1222323333334


Q ss_pred             eEEEcCCeEEEEEEEec----------cCCCeEEEEeCCccCCCCC-eEEccc---ceEEEccCCCCCCeEEEEEEEeCC
Q psy15127         81 ATVLSGSVVEFVCRVGG----------DPLPTILWRRDDGKMPTGR-AKILDD---RSLQIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus        81 ~~~~~G~~~~L~C~~~~----------~p~p~i~W~~~~~~i~~~~-~~~~~~---~~L~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      ..+.+|+.+.|.|.+.+          .|.+.+.|++++..+..+. ......   ..|.|.+++.+|+|.|+|.|.|..
T Consensus       108 ~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  187 (317)
T 2y25_A          108 KIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGK  187 (317)
T ss_dssp             HHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSS
T ss_pred             eecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCC
Confidence            44556777777777665          6889999999999886543 332222   359999999999999999999999


Q ss_pred             ceEEEEEEEEEEee-------------------cccccc-CCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccC
Q psy15127        147 GSISLRASLTVHLL-------------------RDDFRA-EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLE  206 (633)
Q Consensus       147 g~~s~~~~l~V~~~-------------------~p~~~~-~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~  206 (633)
                      |..+..+.|.|...                   .|.+.. .+....+.+|+.+.|.|. ..|.|.+.+.|+++|..+...
T Consensus       188 g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~-~~g~p~p~i~W~~~g~~~~~~  266 (317)
T 2y25_A          188 TGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCN-VWGDPPPEVSWLKNEKALASD  266 (317)
T ss_dssp             CEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEE-EECSSCCEEEEEESSSEECCC
T ss_pred             ceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEE-EecCCCCEEEEEECCEeCCCC
Confidence            98888877776421                   122222 345568899999999999 579999999999999988765


Q ss_pred             CCeeEEeccc---eeeeEEE----eeeEEEEeecCCCC
Q psy15127        207 SSKSLDLSRR---TLGWLRV----RPLYWNVARPRANL  237 (633)
Q Consensus       207 ~~~~~~~~~~---~~~~~~~----~g~y~C~a~~~~~~  237 (633)
                      ....+.....   .+.+..+    .|.|+|.|.|..+.
T Consensus       267 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  304 (317)
T 2y25_A          267 DHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS  304 (317)
T ss_dssp             SSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEE
T ss_pred             CcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCe
Confidence            5433332222   2333222    48999999998774

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.86  E-value=7.5e-21  Score=188.40  Aligned_cols=229  Identities=15%  Similarity=0.156  Sum_probs=156.3

Q ss_pred             cccCCCCCCCCCCccccccceeeEEEEecccCCCCCceEEeeCceEEEcCCCC--CCeEEEEEEe-------------cC
Q psy15127          5 LDTNHAHPMSSPRAEIEPATRTNRVSISGDPGFDSRRSRSIFGSVLGARGALS--DDQWKLIAKE-------------AL   69 (633)
Q Consensus         5 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~--~G~Y~C~a~~-------------v~   69 (633)
                      +.+.|..-...|.+.|+|+.......   .......++.. .+++|.|.+++.  +|.|+|.|.|             +.
T Consensus        23 v~L~C~~~~~~~~~~v~W~k~~~~~~---~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v~~   98 (315)
T 1itb_B           23 DVRPCPLNPNEHKGTITWYKDDSKTP---VSTEQASRIHQ-HKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVE   98 (315)
T ss_dssp             CCCBCCCCSCCCSSCCCEECTTSCSC---SCCCTTSSSEE-CSSBEECTTCCGGGCSCCEECCCSSSCCCCEECCCEEEC
T ss_pred             EEEEeeccCcCCCceEEEEeCCCcCc---cccccCCcEec-cCCeEEECCCChhhCEEEEEEEeCCceEEEEEEEEEEeC
Confidence            34455444444467888654332110   01123445544 357899999998  9999999998             11


Q ss_pred             cCCeeeeCC---CceEEEcCCeEEEEEEE------eccCCCeEEEEeCCccCCCC-CeEEcccceEEEccCCCCCCeEEE
Q psy15127         70 IKPFPISEP---SDATVLSGSVVEFVCRV------GGDPLPTILWRRDDGKMPTG-RAKILDDRSLQIENVGPQDEGLYI  139 (633)
Q Consensus        70 ~~p~~~~~~---~~~~~~~G~~~~L~C~~------~~~p~p~i~W~~~~~~i~~~-~~~~~~~~~L~i~~v~~~d~G~Y~  139 (633)
                      .+|.+...+   ....+.+|+.+.|.|.+      .+.|.+.+.|+|++..+..+ ......++.|.|.+++.+|+|.|+
T Consensus        99 ~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  178 (315)
T 1itb_B           99 NEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYT  178 (315)
T ss_dssp             CCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEE
T ss_pred             CCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCceEEEEeceehhCcEEE
Confidence            223222221   12568899999999998      78899999999999988543 334455679999999999999999


Q ss_pred             EEEE-eCCceE---EEEEEEEEEe----eccccccCCCc-eEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCe-
Q psy15127        140 CDVE-NLVGSI---SLRASLTVHL----LRDDFRAEPKD-TRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK-  209 (633)
Q Consensus       140 C~~~-n~~g~~---s~~~~l~V~~----~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~-  209 (633)
                      |.|. |..|..   +..+.+.+..    .+|.+...+.. ..+.+|+.+.|.|. +.|.|.+.+.|+++|..+...... 
T Consensus       179 C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~-~~g~P~p~i~W~~~g~~i~~~~~~~  257 (315)
T 1itb_B          179 CHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICN-VTGQLSDIAYWKWNGSVIDEDDPVL  257 (315)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEE-EEECTTSEEEEEETTEECCTTCSSE
T ss_pred             EEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEE-EecCCCCeeEEEECCEECCcccccc
Confidence            9999 788875   4455555542    23666555554 46889999999999 588999999999999998765431 


Q ss_pred             ---eEEecc----------ceeeeE----EE-eeeEEEEeecCCCCC
Q psy15127        210 ---SLDLSR----------RTLGWL----RV-RPLYWNVARPRANLN  238 (633)
Q Consensus       210 ---~~~~~~----------~~~~~~----~~-~g~y~C~a~~~~~~~  238 (633)
                         +.....          ..|.+.    .. .|.|+|.|.|..+..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~  304 (315)
T 1itb_B          258 GEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGID  304 (315)
T ss_dssp             EEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCE
T ss_pred             cccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCce
Confidence               111111          122222    12 588999999998754

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.86  E-value=7.7e-20  Score=193.25  Aligned_cols=247  Identities=17%  Similarity=0.201  Sum_probs=151.2

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCC----CeEEEEeC--CccC-----------------CCCCeEEcc-----cceEEE
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPL----PTILWRRD--DGKM-----------------PTGRAKILD-----DRSLQI  127 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~----p~i~W~~~--~~~i-----------------~~~~~~~~~-----~~~L~i  127 (633)
                      .+|..+.+.+|++++|.|.+.+.+.    ..+.|||+  |..+                 ..+|+....     +.+|.|
T Consensus         5 ~qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (512)
T 1zvo_C            5 QESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNL   84 (512)
T ss_pred             ECCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEE
Confidence            4577889999999999999986543    67999986  3211                 023444332     258999


Q ss_pred             ccCCCCCCeEEEEEEEeCCc-----------e--EEEEEEEEEEee---ccccc-cCCCceEEecCCcEEEEEeCCCCCC
Q psy15127        128 ENVGPQDEGLYICDVENLVG-----------S--ISLRASLTVHLL---RDDFR-AEPKDTRVASGETALLECGPPKGQP  190 (633)
Q Consensus       128 ~~v~~~d~G~Y~C~~~n~~g-----------~--~s~~~~l~V~~~---~p~~~-~~~~~~~~~~g~~~~l~C~~~~~~p  190 (633)
                      .+++.+|+|.|.|.+.+..+           .  ....+.|.|...   +|.+. ..+.......|+.+.|.|.+....|
T Consensus        85 ~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P  164 (512)
T 1zvo_C           85 RSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHP  164 (512)
T ss_pred             CcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeec
Confidence            99999999999999987642           1  234467777742   13332 1222110234689999999655557


Q ss_pred             CC-eEEEEECCEEeccCCCeeEEecc------ceeeeEEE---eeeEEEEeecCCCCCCcc--------------ccc--
Q psy15127        191 EP-TLHWKKNGQFIDLESSKSLDLSR------RTLGWLRV---RPLYWNVARPRANLNPRY--------------IGR--  244 (633)
Q Consensus       191 ~~-~i~W~~~~~~~~~~~~~~~~~~~------~~~~~~~~---~g~y~C~a~~~~~~~p~~--------------~~~--  244 (633)
                      .+ .|.|++++...............      ..+.+...   .|.|+|.|.|..+....-              ...  
T Consensus       165 ~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~p  244 (512)
T 1zvo_C          165 TSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWRQGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQ  244 (512)
T ss_pred             CceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcCCceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeCC
Confidence            65 99999976432110000000001      11222111   589999999976532110              000  


Q ss_pred             --------------------------------------------------ccceeEE-------ecCCceEEEEEEEeee
Q psy15127        245 --------------------------------------------------KMASLLI-------WNHPRVNRLSCFAEGS  267 (633)
Q Consensus       245 --------------------------------------------------~~~~~~~-------~~~g~~~~l~C~~~g~  267 (633)
                                                                        ......+       +..|+.++|.|.+.|.
T Consensus       245 p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v~g~  324 (512)
T 1zvo_C          245 PQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGS  324 (512)
T ss_pred             CchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEEEece
Confidence                                                              0011111       2358999999999987


Q ss_pred             cC--CeeEEEECCEEEEeccCCccceEEEcc------CceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127        268 PL--PSVFWTQEGSQVLMFPGNAYGHLHVTQ------EGTLRIQGVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       268 p~--~~v~W~~~g~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                      .+  ..|+|+++|..+..  ...........      .+.|.|.....+|.|.|+|.|.|..+..
T Consensus       325 ~P~~~~i~W~k~g~~~~~--~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~  387 (512)
T 1zvo_C          325 DLKDAHLTWEVAGKVPTG--GVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPP  387 (512)
T ss_pred             ECCCeEEEEEECCEeccC--ceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCC
Confidence            44  38999999987531  00001111111      2369999999999999999999987643

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.85  E-value=2.6e-19  Score=189.25  Aligned_cols=283  Identities=16%  Similarity=0.124  Sum_probs=168.9

Q ss_pred             CceEEee-----CceEEEcCCCC--CCeEEEEEEecC-----------------------------cCCeeee-CCCceE
Q psy15127         40 RRSRSIF-----GSVLGARGALS--DDQWKLIAKEAL-----------------------------IKPFPIS-EPSDAT   82 (633)
Q Consensus        40 ~~~~~~~-----~~~L~i~~v~~--~G~Y~C~a~~v~-----------------------------~~p~~~~-~~~~~~   82 (633)
                      .|+.+..     +.+|.|.+++.  +|.|.|.+.+..                             .+|.+.. .+....
T Consensus        67 ~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~  146 (512)
T 1zvo_C           67 GRVTISVDTSRNQFSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRH  146 (512)
T ss_pred             CceEEEecCCCCEEEEEECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCccc
Confidence            4666543     25799999998  999999986421                             1122221 111110


Q ss_pred             EEcCCeEEEEEEEecc-CCC-eEEEEeCCccCC--CCCeEE------cccceEEEccCCCCCCeEEEEEEEeCCceEEEE
Q psy15127         83 VLSGSVVEFVCRVGGD-PLP-TILWRRDDGKMP--TGRAKI------LDDRSLQIENVGPQDEGLYICDVENLVGSISLR  152 (633)
Q Consensus        83 ~~~G~~~~L~C~~~~~-p~p-~i~W~~~~~~i~--~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~  152 (633)
                      ...|+.++|.|.+.+. |.| .|+|++++....  ......      ...+.|.|..+..+ .|.|+|.|.|..+.....
T Consensus       147 ~~~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~  225 (512)
T 1zvo_C          147 PKDNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKE  225 (512)
T ss_pred             ccCCCeEEEEEEEEeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEE
Confidence            2246899999999876 665 899999764321  000011      11235889888877 999999999988775444


Q ss_pred             E-----------EEEEEee---------------------------------------------------cccc-ccCCC
Q psy15127        153 A-----------SLTVHLL---------------------------------------------------RDDF-RAEPK  169 (633)
Q Consensus       153 ~-----------~l~V~~~---------------------------------------------------~p~~-~~~~~  169 (633)
                      +           .|.|..+                                                   +|.+ ...|.
T Consensus       226 ~~~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~  305 (512)
T 1zvo_C          226 IFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPA  305 (512)
T ss_pred             EecCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCC
Confidence            3           2344322                                                   0222 22333


Q ss_pred             ceEEecCCcEEEEEeCCCCCCC-CeEEEEECCEEeccCCC-e-eEEeccc------eeeeEE----EeeeEEEEeecCCC
Q psy15127        170 DTRVASGETALLECGPPKGQPE-PTLHWKKNGQFIDLESS-K-SLDLSRR------TLGWLR----VRPLYWNVARPRAN  236 (633)
Q Consensus       170 ~~~~~~g~~~~l~C~~~~~~p~-~~i~W~~~~~~~~~~~~-~-~~~~~~~------~~~~~~----~~g~y~C~a~~~~~  236 (633)
                      ...+.+|+.+.|.|.+...+|. ..|.|+++|..+..... . .....++      .+.+..    ..|.|+|.|.|...
T Consensus       306 ~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~  385 (512)
T 1zvo_C          306 VQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSL  385 (512)
T ss_pred             hHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCC
Confidence            3446679999999995444453 49999999987652111 1 1111111      122221    23799999999876


Q ss_pred             CCCcccc-c-------ccceeEEec---CCceEE-EEEEEeeecCC--eeEEEECCEEEEeccCCccceEEEccC-----
Q psy15127        237 LNPRYIG-R-------KMASLLIWN---HPRVNR-LSCFAEGSPLP--SVFWTQEGSQVLMFPGNAYGHLHVTQE-----  297 (633)
Q Consensus       237 ~~p~~~~-~-------~~~~~~~~~---~g~~~~-l~C~~~g~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~-----  297 (633)
                      ..+.... .       ..+......   .|+.+. |.|.+.|.+++  .+.|.|+|..+.... ..........+     
T Consensus       386 ~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~-~~~~~~~~~~dg~~~~  464 (512)
T 1zvo_C          386 PPQRLMALREPAAQAPVKLSLNLLASSDPPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSG-FAPARPPPQPGSTTFW  464 (512)
T ss_pred             CCCceeEEeecCCCCCCCCEEEEEccCcCCCCceEEEEEEeeeCCCCcEEEEEECCeECcCcc-ccccceeECCCCCEEE
Confidence            5431111 0       011222221   478899 99999996554  689999999874211 00011112222     


Q ss_pred             --ceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127        298 --GTLRIQGVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       298 --~~l~i~~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                        ..|.|.....+|.|.|+|.|.|.....
T Consensus       465 ~~s~L~v~~~~~~~~g~YtC~v~h~~l~~  493 (512)
T 1zvo_C          465 AWSVLRVPAPPSPQPATYTCVVSHEDSRT  493 (512)
T ss_pred             EEEEEEECchhcCCCCeEEEEEEecCCCC
Confidence              246777777778999999999986543

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.85  E-value=1.9e-21  Score=180.18  Aligned_cols=134  Identities=20%  Similarity=0.351  Sum_probs=108.7

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccC------------C-CCCeEEcccceEEEccCCCCCCe
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM------------P-TGRAKILDDRSLQIENVGPQDEG  136 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i------------~-~~~~~~~~~~~L~i~~v~~~d~G  136 (633)
                      .++.+...+..+.+.+|+.+.|.|.+.+.|.+.+.|+|++..+            . ..+... ....|.|.+++.+|+|
T Consensus         3 ~~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~L~i~~~~~~d~G   81 (209)
T 1nbq_A            3 GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTF-LPTGITFKSVTREDTG   81 (209)
T ss_dssp             CCCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEE-ETTEEECSCCCTTSCS
T ss_pred             ceEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEe-eccEEEEeeCCHHHCc
Confidence            4567778888999999999999999999899999999987652            1 123332 3478999999999999


Q ss_pred             EEEEEEEeCCc--eEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEecc
Q psy15127        137 LYICDVENLVG--SISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDL  205 (633)
Q Consensus       137 ~Y~C~~~n~~g--~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~  205 (633)
                      .|+|.+.+..|  ..+..+.|.|..+ |.+...+....+.+|+.+.|.|.+..+.|.+.+.|++++..+..
T Consensus        82 ~Y~C~~~~~~g~~~~~~~~~l~V~~~-p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~  151 (209)
T 1nbq_A           82 TYTCMVSEEGGNSYGEVKVKLIVLVP-PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPT  151 (209)
T ss_dssp             EEEEEEEETTSSCEECCEEECCEEBC-CCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCS
T ss_pred             EEEEEEecCCCCccceEEEEEEEecC-CcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCC
Confidence            99999999865  3566778888887 66665566677899999999999558899999999999876543

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.85  E-value=3.1e-21  Score=194.22  Aligned_cols=194  Identities=16%  Similarity=0.146  Sum_probs=123.0

Q ss_pred             EeeCceEEEcCCCC--CCeEEEEEEe------------cCcCCee----eeCCCceEEEcCCeEEEEEEE-----eccCC
Q psy15127         44 SIFGSVLGARGALS--DDQWKLIAKE------------ALIKPFP----ISEPSDATVLSGSVVEFVCRV-----GGDPL  100 (633)
Q Consensus        44 ~~~~~~L~i~~v~~--~G~Y~C~a~~------------v~~~p~~----~~~~~~~~~~~G~~~~L~C~~-----~~~p~  100 (633)
                      ...+++|.|.+++.  +|.|+|.|.|            +..+|.+    ...+....+.+|+.+.|.|.+     .+.|.
T Consensus        75 ~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~  154 (349)
T 4dep_C           75 SKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVK  154 (349)
T ss_dssp             EEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSC
T ss_pred             eecCCEEEEccCChhhCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCC
Confidence            34578999999998  9999999998            2222221    122345578899999999985     67899


Q ss_pred             CeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCC-ceE---EEEEEEEEEee-----ccccccCCCce
Q psy15127        101 PTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLV-GSI---SLRASLTVHLL-----RDDFRAEPKDT  171 (633)
Q Consensus       101 p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~-g~~---s~~~~l~V~~~-----~p~~~~~~~~~  171 (633)
                      +.++|+|++..+.........+..|.|.+++.+|+|.|+|.|.|.. |..   +..+.|.|..+     +|.+...+...
T Consensus       155 ~~v~W~k~~~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~  234 (349)
T 4dep_C          155 PTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHV  234 (349)
T ss_dssp             CEEEEEETTEECCSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC------
T ss_pred             ceEEEeeCCEECCCccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCce
Confidence            9999999999986654444455789999999999999999999986 543   67777777764     25444444332


Q ss_pred             --EEecCCcEEEEEeCCC---CCCCCeEEEEECCEEeccCCCe-eE-----------EeccceeeeE----EEe-eeEEE
Q psy15127        172 --RVASGETALLECGPPK---GQPEPTLHWKKNGQFIDLESSK-SL-----------DLSRRTLGWL----RVR-PLYWN  229 (633)
Q Consensus       172 --~~~~g~~~~l~C~~~~---~~p~~~i~W~~~~~~~~~~~~~-~~-----------~~~~~~~~~~----~~~-g~y~C  229 (633)
                        .+.+|+.+.|.|.+..   +.|.+.+.|+++|..+...... ..           ......+.+.    ... |.|+|
T Consensus       235 ~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C  314 (349)
T 4dep_C          235 VYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVC  314 (349)
T ss_dssp             ----------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEE
T ss_pred             eEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEE
Confidence              6789999999999532   5788999999999887652111 00           0001112222    235 89999


Q ss_pred             EeecCCCC
Q psy15127        230 VARPRANL  237 (633)
Q Consensus       230 ~a~~~~~~  237 (633)
                      .|.|..+.
T Consensus       315 ~a~N~~G~  322 (349)
T 4dep_C          315 HARSAKGE  322 (349)
T ss_dssp             EEECSSCE
T ss_pred             EEEcCCCc
Confidence            99998874

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A

Probab=99.85  E-value=2.3e-20  Score=171.70  Aligned_cols=173  Identities=16%  Similarity=0.230  Sum_probs=135.7

Q ss_pred             CCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEec
Q psy15127        412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENS  491 (633)
Q Consensus       412 ~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~  491 (633)
                      +|..+.+...+.+++.|+|.++.     ++.+.+|.|+|+..+....+...........++|.+|.|++.|.|+|+|.|.
T Consensus        25 ~P~~l~~~~~~~~sv~lsW~~p~-----~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~   99 (203)
T 2gee_A           25 QPTDLSFVDITDSSIGLRWTPLN-----SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKN   99 (203)
T ss_dssp             CCEEEEEECCTTTCEEEEEECCS-----SSSCCEEEEEEEESSSSSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEESS
T ss_pred             CCCccEEEecCCCEEEEEecCCC-----CCCccEEEEEEEECCCCCCceeEEcCCCccEEEeCCCCCCCEEEEEEEEEeC
Confidence            56777777888999999999987     3578999999998765444444334456788999999999999999999999


Q ss_pred             cccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEE
Q psy15127        492 HGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVV  571 (633)
Q Consensus       492 ~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i  571 (633)
                      .|.|.++    .+.+...+| +|.++                ++..++.+++.|+|++|          .++.+.+| .|
T Consensus       100 ~g~s~~~----~~~t~~~~p-~P~~l----------------~~~~~~~~sv~l~W~~p----------~~~~i~~Y-~v  147 (203)
T 2gee_A          100 GGESTPT----TLTQQTAVP-PPTDL----------------RFTNIGPDTMRVTWAPP----------PSIDLTNF-LV  147 (203)
T ss_dssp             SCBCCCE----EEEEECCCC-CCEEE----------------EEEEEETTEEEEEEECC----------SSCCCSEE-EE
T ss_pred             CCccccE----eeeecCCCc-CCCce----------------EEEEcCCCEEEEEEcCC----------CCCCccEE-EE
Confidence            9987654    244444444 44444                77888999999999954          24689999 99


Q ss_pred             EEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccC
Q psy15127        572 NLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       572 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s  632 (633)
                      +|+......      .|.     .+...+..++++|.+|+|++.|.|+|+|.|..|+|+|+
T Consensus       148 ~~~~~~~~~------~~~-----~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~  197 (203)
T 2gee_A          148 RYSPVKNEE------DVA-----ELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL  197 (203)
T ss_dssp             EEEETTCGG------GCE-----EEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             EEEECCCCC------ccE-----EEEcCCCcCEEEECCCCCCCEEEEEEEEecCCCcCCCe
Confidence            999865432      122     33345678999999999999999999999999999985

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.85  E-value=1.1e-20  Score=169.63  Aligned_cols=167  Identities=18%  Similarity=0.239  Sum_probs=120.7

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCe-EEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPT-ILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVG  147 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~-i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g  147 (633)
                      ..+|.+...|....+.+|+.++|.|.+.+.|.+. +.|+|++..+..      ..+.|.|.+++.+|+|.|+|.+.|..+
T Consensus         5 ~~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~~~n~~~   78 (175)
T 1fnl_A            5 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS------QASSYFIDAATVNDSGEYRCQTNLSTL   78 (175)
T ss_dssp             CCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES------SCSEEEESSCCGGGCEEEEEECSSSCC
T ss_pred             CCCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC------CceEEEEeCCCcccCEEEEEEeeCCcc
Confidence            4578898999888999999999999999887776 899999987653      346899999999999999999988554


Q ss_pred             eEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEEeeeE
Q psy15127        148 SISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLY  227 (633)
Q Consensus       148 ~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y  227 (633)
                        +..+.|.|..+ +.. ..+....+.+|+.+.|.|.+..+.|.+.+.|+++|..+                        
T Consensus        79 --s~~~~l~V~~~-~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~------------------------  130 (175)
T 1fnl_A           79 --SDPVQLEVHIG-WLL-LQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDR------------------------  130 (175)
T ss_dssp             --CCCEEEEEECS-SEE-EECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEE------------------------
T ss_pred             --cccEEEEEeCC-Cce-eeCCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEc------------------------
Confidence              45566777644 322 22233456677777777763222233366666555433                        


Q ss_pred             EEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCC
Q psy15127        228 WNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQK  307 (633)
Q Consensus       228 ~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  307 (633)
                                                                            ..          ......|.|.++..
T Consensus       131 ------------------------------------------------------~~----------~~~~~~L~i~~v~~  146 (175)
T 1fnl_A          131 ------------------------------------------------------KY----------FHHNSDFHIPKATL  146 (175)
T ss_dssp             ------------------------------------------------------EE----------EEECCCEEESSCCG
T ss_pred             ------------------------------------------------------cC----------CCCCCEEEEcccCh
Confidence                                                                  10          11245899999999


Q ss_pred             CCCeEEEEEEEeCCce-eEEEEEEEEE
Q psy15127        308 EDAGFFVCSALSVAGS-TTVRAFLQVR  333 (633)
Q Consensus       308 ~d~G~Y~C~a~n~~g~-~~~~~~l~v~  333 (633)
                      +|+|.|+|.|.|..|. .+..+.|.|.
T Consensus       147 ~d~G~Y~C~a~n~~~~~~s~~~~l~V~  173 (175)
T 1fnl_A          147 KDSGSYFCRGLVGSKNVSSETVNITIT  173 (175)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             hhCeEEEEEEEcCCCCccCccEEEEEe
Confidence            9999999999997664 4556666665

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.85  E-value=7.1e-21  Score=186.16  Aligned_cols=205  Identities=12%  Similarity=-0.008  Sum_probs=148.5

Q ss_pred             EEEEecccCCCCCceEEeeCceEEEcCCCC--CCeEEEEEEe---------cCcCCeeeeCCCceEEEcCCeEEEEEEEe
Q psy15127         28 RVSISGDPGFDSRRSRSIFGSVLGARGALS--DDQWKLIAKE---------ALIKPFPISEPSDATVLSGSVVEFVCRVG   96 (633)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~--~G~Y~C~a~~---------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~   96 (633)
                      .|..+|.+.    ......+++|.|.+++.  +|.|+|.|.|         +..+|.+...+....+.+|+.+.|.|.+.
T Consensus        41 ~W~~~~~~~----~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ng~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~  116 (290)
T 2o26_X           41 RWTFKTYFN----EMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLT  116 (290)
T ss_dssp             EEEEECSSS----CEEEECSSEEEETTCCGGGCEEEEEEESSSCEEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBS
T ss_pred             EEecCCcce----eeecCCCceEEEeccCHHhCeEEEEEeeCCccEEEEEEEeCCCcccccccceEEecCCeEEEeCcCC
Confidence            344455443    22334458899999998  9999999965         44555555667788899999999999998


Q ss_pred             ccCC-CeEEE-EeCCccCCCCCe-EEcccceEEEccCCCCCCe-EEEEEEEeCCceE-EEEEEEEEEe---eccccccCC
Q psy15127         97 GDPL-PTILW-RRDDGKMPTGRA-KILDDRSLQIENVGPQDEG-LYICDVENLVGSI-SLRASLTVHL---LRDDFRAEP  168 (633)
Q Consensus        97 ~~p~-p~i~W-~~~~~~i~~~~~-~~~~~~~L~i~~v~~~d~G-~Y~C~~~n~~g~~-s~~~~l~V~~---~~p~~~~~~  168 (633)
                      + |. +.++| +++|..+..+.. ....++.|.|.+++.+|+| .|+|.|.|..+.. +..+.|.|..   .+|.+...+
T Consensus       117 ~-p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~  195 (290)
T 2o26_X          117 D-PQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPE  195 (290)
T ss_dssp             C-CSCEEEEEEETTSCCCCTTCEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSC
T ss_pred             C-CCCceEEEEeCCCcCCCCCCceeeCCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCC
Confidence            5 77 89999 568888866543 3444679999999999999 9999999986553 4457888872   237777777


Q ss_pred             CceEEecCCcEEEEEeCCCCCCCCe-EEEEECCEEe----ccCCCeeEE-----eccceeeeEE----EeeeEEEEeecC
Q psy15127        169 KDTRVASGETALLECGPPKGQPEPT-LHWKKNGQFI----DLESSKSLD-----LSRRTLGWLR----VRPLYWNVARPR  234 (633)
Q Consensus       169 ~~~~~~~g~~~~l~C~~~~~~p~~~-i~W~~~~~~~----~~~~~~~~~-----~~~~~~~~~~----~~g~y~C~a~~~  234 (633)
                      ....+.+|+.+.|.|. ..+.|.+. +.|++++..+    .......+.     .....|.+..    ..|.|+|.|.|.
T Consensus       196 ~~~~v~~G~~v~l~C~-~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~  274 (290)
T 2o26_X          196 TSHLLKKGDTFTVVCT-IKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNT  274 (290)
T ss_dssp             SBCCCCTTCCEEEEEE-EEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECS
T ss_pred             CcceEecCCcEEEEEE-EecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCC
Confidence            7778999999999999 46888886 9999998763    222221111     1112222221    248999999998


Q ss_pred             CCCC
Q psy15127        235 ANLN  238 (633)
Q Consensus       235 ~~~~  238 (633)
                      .+..
T Consensus       275 ~g~~  278 (290)
T 2o26_X          275 FGSA  278 (290)
T ss_dssp             SCEE
T ss_pred             CCcE
Confidence            7743

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.85  E-value=1.7e-19  Score=177.27  Aligned_cols=128  Identities=23%  Similarity=0.338  Sum_probs=93.0

Q ss_pred             eEEecc-cccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEe--eCCeEEEEeCCCCC
Q psy15127        359 RIACDL-RETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNT--TRGSVTLGWGEPEP  435 (633)
Q Consensus       359 ~~i~~~-~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~--~~~~i~l~W~~~~~  435 (633)
                      ..+.++ .....|.|+|.|.|..|..... .+.+...           ....|.+|..+.+...  +.+++.|+|++|..
T Consensus       160 ~~i~~L~~p~t~Y~f~V~A~N~~G~~~s~-~~~~~~~-----------~~~~p~pP~~~~v~~~~~~~~sv~l~W~~p~~  227 (303)
T 1i1r_A          160 CTVDYSTVYFVNIEVWVEAENALGKVTSD-HINFDPV-----------YKVKPNPPHNLSVINSEELSSILKLTWTNPSI  227 (303)
T ss_dssp             EECSSCCCTTSCEEEEEEEEETTEEEECC-CEEECGG-----------GGEECCCCEEEEEECCSSSSSCEEEEEECCGG
T ss_pred             EEECCcCcccccEEEEEEEEcCCCCcccC-CEEECHH-----------HeEecCCCcceEEEEecCCCCEEEEEECCCCC
Confidence            345567 6778899999999999976321 1112110           0123456666665543  66899999999985


Q ss_pred             CCCCCcceeEEEEEEEEecCCCCeEEEEE---eeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCC
Q psy15127        436 RGGGVAPVIGYTVEYFSSDLQTGWVVAAH---RITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP  502 (633)
Q Consensus       436 ~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~---~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~  502 (633)
                      .   ++++.+|.|+|+..+ ...|.....   ......++|.+|.|++.|.|+|+|.|..|.|++|.++.
T Consensus       228 ~---~~~i~~Y~v~y~~~~-~~~w~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rV~A~n~~G~G~~S~wS~  293 (303)
T 1i1r_A          228 K---SVIILKYNIQYRTKD-ASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSE  293 (303)
T ss_dssp             G---GTSCEEEEEEEEETT-CSSCEECCGGGGCSCCSEEEECSCCTTCEEEEEEEEEETTSCSCCCCCCC
T ss_pred             C---CcccEEEEEEEEeCC-CCCceEEccccCCCceeEEEeCCCCCCCEEEEEEEeccCCCCCCcCCCCC
Confidence            3   468999999999876 356765432   23457899999999999999999999999999987763

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A

Probab=99.85  E-value=2e-18  Score=174.95  Aligned_cols=268  Identities=15%  Similarity=0.118  Sum_probs=186.6

Q ss_pred             CceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEecccCCCc-------------eEEeCCCcc--cc---------
Q psy15127        297 EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKG-------------TFTLGQPNL--AT---------  352 (633)
Q Consensus       297 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~p-------------~~~~~~~~~--~~---------  352 (633)
                      ...+.+.++.......|...|.|..|..... ...+.  +..|+|             .+.|.+...  ..         
T Consensus        57 ~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~-~~~~~--~~~~~p~~l~~~~~~~~si~l~W~~p~~~~~~~Y~v~~~~~  133 (368)
T 1fnf_A           57 QSSCTFDNLSPGLEYNVSVYTVKDDKESVPI-SDTII--PAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPV  133 (368)
T ss_dssp             CCEEECCCCCTTSCEEEEEEEEETTEECCCE-EEEEC--CCCCCCEEEEEESCCSSCEEEEEECCTTCCCSEEEEEEEET
T ss_pred             cCEEEECCCCCCCEEEEEEEEEcCCCccCce-eeeec--CCCcCCceeEEEEcCCCeEEEEeeCCCCCCCcEEEEEEEEC
Confidence            3468888888888888888899988754322 12222  222222             234433311  00         


Q ss_pred             -CC----------CCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEe
Q psy15127        353 -GN----------SDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNT  421 (633)
Q Consensus       353 -g~----------p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~  421 (633)
                       +.          ....+.+.+|.....|.|++.|.|..|.... .......               .+.+|..+.+...
T Consensus       134 ~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~-~~~~~~~---------------~~~~P~~l~~~~~  197 (368)
T 1fnf_A          134 KNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTP-LRGRQKT---------------GLDSPTGIDFSDI  197 (368)
T ss_dssp             TCTTCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCC-EEEEEEC---------------CCCCCEEEEEESC
T ss_pred             CCCCccEEEEcCCCcceEEecCCCCCCEEEEEEEEEeCCCCCCC-eEeeecC---------------CCCCCCccEEEEc
Confidence             10          1234478888999999999999999885432 2222221               1335666667777


Q ss_pred             eCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCC
Q psy15127        422 TRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVS  501 (633)
Q Consensus       422 ~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~  501 (633)
                      ..+++.|+|.++.      +.+.+|.|+|+..+....+...........++|.+|.|++.|.|+|+|.|..|.|+++.  
T Consensus       198 ~~~sv~l~W~~p~------~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~~~--  269 (368)
T 1fnf_A          198 TANSFTVHWIAPR------ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLI--  269 (368)
T ss_dssp             CSSEEEEEEECCS------SCCSEEEEEEECSCCSSCCEEEEEETTCCEEEEESCCTTCEEEEEEEEEETTEECCCEE--
T ss_pred             cCCEEEEEEeCCC------CCcCEEEEEEecCCCCCCccEEEeCCCcCEEEECCCCCCCEEEEEEEEEeCCccCCccc--
Confidence            8899999999875      46899999999876544555444445678899999999999999999999999987642  


Q ss_pred             CceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcc
Q psy15127        502 PITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTAS  581 (633)
Q Consensus       502 ~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~  581 (633)
                         .+...+|.+|..+                .+..++.+++.|+|++|        .   +.+.+| .|+|+..+....
T Consensus       270 ---~~~~t~p~~P~~l----------------~~~~~~~~sv~l~W~~p--------~---~~i~~Y-~v~~~~~~~~~~  318 (368)
T 1fnf_A          270 ---GQQSTVSDVPRDL----------------EVVAATPTSLLISWDAP--------A---VTVRYY-RITYGETGGNSP  318 (368)
T ss_dssp             ---EEEECCCCSCEEE----------------EEEEEETTEEEEEEECC--------S---SCCSEE-EEEEEETTCCSC
T ss_pred             ---ccccCCCCCCCee----------------EEEecCCCEEEEEeeCC--------C---CccceE-EEEEEECCCCCc
Confidence               2233445555544                67778899999999954        1   248999 999988765320


Q ss_pred             cceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        582 TAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       582 ~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                            +     ..+...+..+.+++.+|++++.|.|+|+|.|..|.|++|+
T Consensus       319 ------~-----~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~~~~G~g~~s~  359 (368)
T 1fnf_A          319 ------V-----QEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASS  359 (368)
T ss_dssp             ------C-----EEEEEETTCCEEEECSCCTTCCEEEEEEEECCCSSSCCBC
T ss_pred             ------c-----EEEEcCCCeeEEEecCCCCCCEEEEEEEEeCCCCcCcccC
Confidence                  1     1222345688999999999999999999999999999874

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}

Probab=99.85  E-value=1.3e-20  Score=193.89  Aligned_cols=259  Identities=14%  Similarity=0.067  Sum_probs=172.4

Q ss_pred             EEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEE
Q psy15127        250 LIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF  329 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  329 (633)
                      .++..|++++|.|.+.   .+.+.|.++|..+..      .++ ....+.|.|.++...|.|.|.|.+.+.  ..     
T Consensus       213 ~~v~~Gs~vtl~C~a~---~~~I~W~~ng~~i~~------~ri-~~~~~~L~I~nl~~sd~g~y~~~C~~~--~~-----  275 (488)
T 2q7n_A          213 KVVLAGSNMTICCMSP---TKVLSGQIGNTLRPL------IHL-YGQTVAIHILNIPVSENSGTNIIFITD--DD-----  275 (488)
T ss_dssp             CEEESSCCCEEEECCS---SCEEEEEETTEECCC------EEC-SSSCEEEECCSCCCCCSSCEEEEEEES--SC-----
T ss_pred             CEEcCCCCEEEEEECC---CCEEEEEECCEECch------hhc-cceEEEEEEeCCCcccCCcEEEEEEcC--Ce-----
Confidence            3457899999999998   469999999987632      111 123347889999998888887766421  11     


Q ss_pred             EEEEecccCCCceEEeCCCccccCCCCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCC
Q psy15127        330 LQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLF  409 (633)
Q Consensus       330 l~v~~~~~~p~p~~~~~~~~~~~g~p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~  409 (633)
                                                                            ...+.|.+..+               
T Consensus       276 ------------------------------------------------------i~~~~l~v~~p---------------  286 (488)
T 2q7n_A          276 ------------------------------------------------------VYGTVVFAGYP---------------  286 (488)
T ss_dssp             ------------------------------------------------------EEEEEEEEECC---------------
T ss_pred             ------------------------------------------------------EEEEEEEeeCC---------------
Confidence                                                                  11234444433               


Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEe-eeeceEEEecCCCCCeEEEEEEE
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHR-ITSTSITVSDLKPDTSYMFIVRA  488 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~~~Y~~~v~a  488 (633)
                      |++|..+.+.......+.++|.++....-++.++..|.|.|+..+....|...... .....+++..+...+.|.|+|.|
T Consensus       287 P~~P~nl~C~~~~~~svtcsW~pg~~~~l~G~~~t~Y~L~y~~~g~~~~c~~~~~~~~~~~~ct~~l~~~~t~Y~f~V~A  366 (488)
T 2q7n_A          287 PDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTG  366 (488)
T ss_dssp             CCCCCSCEEEBSSSSEEEEEECCCSCCCCCTTSSCEEEEEETTTCCEEEEECSSCCCSSCEEEEEECCSSCCCCEEEEEE
T ss_pred             CCCCcccEEEEcCCCEEEEEEeCCCcCCCCCCCceeEEEEEEECCCCCCCccccccCCceEEEEEcCCCCccEEEEEEEE
Confidence            34588888888788999999999885421124678999998765432223211110 12345666555446999999999


Q ss_pred             EeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcce
Q psy15127        489 ENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGT  568 (633)
Q Consensus       489 ~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y  568 (633)
                      .|..|.++ + ...+..+....|.+|.++                ++..++.+++.|+|++|        ...++.+.+|
T Consensus       367 ~N~~G~~~-S-~~~~~~~~~v~P~PP~nl----------------~v~~~s~~sl~LsW~pP--------~~~~g~~l~Y  420 (488)
T 2q7n_A          367 RNPLGQAQ-S-AVVINVTERVAPHDPTSL----------------KVKDINSTVVTFSWYLP--------GNFTKINLLC  420 (488)
T ss_dssp             EETTEEEE-E-EEECCGGGTBCCCCCEEE----------------EEEECSTTCEEEEEEEE--------EECSSSEEEE
T ss_pred             EeCCCCcc-c-eEEEEecCCCCCCCCeEE----------------EEEecCCCEEEEEEeCC--------CCCCCcceEE
Confidence            99999964 3 221122233345555555                77788899999999976        3346789999


Q ss_pred             eEEEEEEcCCCcccceeeeeeccceeEeecCCccceE--EeeccccceeEEEEEeccccccccccC
Q psy15127        569 KVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSY--TVTHLRKFTKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       569 ~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~--~i~~L~~~t~Y~~~v~a~n~~g~g~~s  632 (633)
                       .|+|+..+...       |+. + ..+. ....+.+  +|.+|+|++.|.|+|+|.| .|.|.+|
T Consensus       421 -eV~Yr~~~~~~-------w~~-~-~~~~-~~~~~~~~v~l~~L~P~T~Y~~rVRA~~-~g~G~WS  474 (488)
T 2q7n_A          421 -QIEICKANSKK-------EVR-N-ATIR-GAEDSTYHVAVDKLNPYTAYTFRVRCSS-KTFWKWS  474 (488)
T ss_dssp             -EEEEBCTTSCC-------EEE-E-EEEE-CCEEEEEEEEECSCCSSCCBBCCEEEEE-SSCSSCC
T ss_pred             -EEEEEECCCCC-------ceE-E-EEEe-cCCCcEEEEEeCCCCCCceEEEEEEEEE-CCCCCCC
Confidence             99999875532       532 1 1111 1123455  9999999999999999999 9996444

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.85  E-value=6.6e-21  Score=177.12  Aligned_cols=177  Identities=20%  Similarity=0.292  Sum_probs=129.0

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccC----CCeEEEEeC----------------CccCC------CCCeEEcc------
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDP----LPTILWRRD----------------DGKMP------TGRAKILD------  121 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p----~p~i~W~~~----------------~~~i~------~~~~~~~~------  121 (633)
                      +...+..+.+.+|++++|.|.+.+.+    .+.+.|+|+                +..+.      .++.....      
T Consensus         3 i~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   82 (214)
T 3jz7_A            3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSG   82 (214)
T ss_dssp             ---CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGT
T ss_pred             eecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCC
Confidence            34455677899999999999998776    468999983                33332      33444432      


Q ss_pred             cceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCE
Q psy15127        122 DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ  201 (633)
Q Consensus       122 ~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~  201 (633)
                      +.+|.|.+++.+|+|.|+|.+.+..+..+..+.|.|..+ |.+...+....+.+|+.+.|.|.+..+.|.+.+.|++++.
T Consensus        83 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~-p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~  161 (214)
T 3jz7_A           83 DASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK-PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSD  161 (214)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC-CBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECST
T ss_pred             cccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcC-CCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCC
Confidence            467999999999999999999999998899999999987 5554444444467788888888843677777777777432


Q ss_pred             EeccCCCeeEEeccceeeeEEEeeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEE
Q psy15127        202 FIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQV  281 (633)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~  281 (633)
                      ......                                                                          
T Consensus       162 ~~~~~~--------------------------------------------------------------------------  167 (214)
T 3jz7_A          162 SQTMPT--------------------------------------------------------------------------  167 (214)
T ss_dssp             TCCCCG--------------------------------------------------------------------------
T ss_pred             CCccCc--------------------------------------------------------------------------
Confidence            111000                                                                          


Q ss_pred             EeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127        282 LMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR  333 (633)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  333 (633)
                              .......++.|.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus       168 --------~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  211 (214)
T 3jz7_A          168 --------PWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV  211 (214)
T ss_dssp             --------GGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred             --------cceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence                    00011134589999999999999999999999999988888776

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.85  E-value=8.5e-20  Score=167.55  Aligned_cols=129  Identities=14%  Similarity=0.221  Sum_probs=90.5

Q ss_pred             eeeCCCceE-EEcCCeEEEEEEEeccCCCeEEEEeCC-ccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEE
Q psy15127         74 PISEPSDAT-VLSGSVVEFVCRVGGDPLPTILWRRDD-GKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISL  151 (633)
Q Consensus        74 ~~~~~~~~~-~~~G~~~~L~C~~~~~p~p~i~W~~~~-~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~  151 (633)
                      +...|.+.. +.+|+.++|.|.+.|.|.|.|.|+++. ..+............|.|.+++.+|+|.|+|.|.|..+..+.
T Consensus         3 v~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~   82 (202)
T 1vca_A            3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEK   82 (202)
T ss_dssp             EEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEE
T ss_pred             EEECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEee
Confidence            445555544 459999999999999999999999843 222211111223457999999999999999999999988888


Q ss_pred             EEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCC--CeEEEEECCEEe
Q psy15127        152 RASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPE--PTLHWKKNGQFI  203 (633)
Q Consensus       152 ~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~i~W~~~~~~~  203 (633)
                      .+.|.|..++..+.+.+. ..+.+|+.++|.|.+..+.|.  ++|.|++++..+
T Consensus        83 ~~~l~V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l  135 (202)
T 1vca_A           83 GIQVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLM  135 (202)
T ss_dssp             EEEEEEEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEE
T ss_pred             EEEEEEEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeEC
Confidence            999999987333333333 456777777777774333333  256777766544

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.85  E-value=6.4e-21  Score=171.27  Aligned_cols=169  Identities=18%  Similarity=0.194  Sum_probs=120.4

Q ss_pred             cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCC-eEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCC
Q psy15127         68 ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus        68 v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p-~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      +..+|.+...|....+.+|+.++|.|.+.+.+.+ .++|+|++..+...      ++.|.|.+++.+|+|.|+|.+.|..
T Consensus         1 v~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~~~~~~   74 (176)
T 1f2q_A            1 VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET------NSSLNIVNAKFEDSGEYKCQHQQVN   74 (176)
T ss_dssp             ---CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC------SSEEEECSCCGGGCEEEEEECTTSS
T ss_pred             CCCCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC------ceEEEEeccceecCEEEEEEcCCcc
Confidence            3567889999999899999999999999888775 69999999887643      4689999999999999999998765


Q ss_pred             ceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEEeee
Q psy15127        147 GSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPL  226 (633)
Q Consensus       147 g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  226 (633)
                      +  +..+.|.|..+ +. ...+....+.+|+.+.|.|.+..+.|.+.+.|+++|..+..                     
T Consensus        75 ~--s~~~~l~V~~~-~~-~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~---------------------  129 (176)
T 1f2q_A           75 E--SEPVYLEVFSD-WL-LLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKY---------------------  129 (176)
T ss_dssp             C--CCCEEEEEECS-SE-EEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCS---------------------
T ss_pred             c--cccEEEEEeCc-ce-eecCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEee---------------------
Confidence            4  34566666633 22 22223345667777777777434455556666665543310                     


Q ss_pred             EEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCC
Q psy15127        227 YWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ  306 (633)
Q Consensus       227 y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~  306 (633)
                                                                                         ...+..|.|.++.
T Consensus       130 -------------------------------------------------------------------~~~~~~L~i~~v~  142 (176)
T 1f2q_A          130 -------------------------------------------------------------------WYENHNISITNAT  142 (176)
T ss_dssp             -------------------------------------------------------------------CCCSSEEEESSCC
T ss_pred             -------------------------------------------------------------------ecCCCeEEECCCC
Confidence                                                                               0123589999999


Q ss_pred             CCCCeEEEEEEEeCCce-eEEEEEEEEEe
Q psy15127        307 KEDAGFFVCSALSVAGS-TTVRAFLQVRE  334 (633)
Q Consensus       307 ~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~  334 (633)
                      .+|+|.|+|.|.|..+. .+..+.|.|..
T Consensus       143 ~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  171 (176)
T 1f2q_A          143 VEDSGTYYCTGKVWQLDYESEPLNITVIK  171 (176)
T ss_dssp             GGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             cccCEEEEEEEEeCCcceEecCEEEEEec
Confidence            99999999999997544 45557777774

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.85  E-value=5.5e-20  Score=169.03  Aligned_cols=178  Identities=24%  Similarity=0.301  Sum_probs=127.5

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEE-EeccCC-CeEEEEeCCccCC---CCCeE-EcccceEEEccCCCCCCeEEEEEEEe
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCR-VGGDPL-PTILWRRDDGKMP---TGRAK-ILDDRSLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~-~~~~p~-p~i~W~~~~~~i~---~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                      +++....+..+.+.+|+.+.|.|. +.+.|. +.+.|+|++..+.   ..+.. ...++.|.|.+++.+|+|.|+|.+.+
T Consensus         8 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   87 (201)
T 3s97_C            8 DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSS   87 (201)
T ss_dssp             CCCCSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CccCcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEe
Confidence            344445567889999999999999 788888 9999999998873   22333 33467899999999999999999998


Q ss_pred             CCceEEE---EEEEEEEee------ccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEecc
Q psy15127        145 LVGSISL---RASLTVHLL------RDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR  215 (633)
Q Consensus       145 ~~g~~s~---~~~l~V~~~------~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~  215 (633)
                      ..+....   .+.+.+...      +|.+...+.                                              
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----------------------------------------------  121 (201)
T 3s97_C           88 PSITKSVFSKFIPLIPIPERTTKPYPADIVVQFK----------------------------------------------  121 (201)
T ss_dssp             GGGTEEEECCCEEEEEECCSSCCCEEEEEEEECC----------------------------------------------
T ss_pred             cCCCcchhhcccceeeccccccCCCCCceEecCC----------------------------------------------
Confidence            7655332   222222211      011111111                                              


Q ss_pred             ceeeeEEEeeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc
Q psy15127        216 RTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT  295 (633)
Q Consensus       216 ~~~~~~~~~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~  295 (633)
                                                       ...+..|+.++|.|.+.|.|.+.+.|++++..+..      ......
T Consensus       122 ---------------------------------~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~------~~~~~~  162 (201)
T 3s97_C          122 ---------------------------------DVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPS------TAEIST  162 (201)
T ss_dssp             ---------------------------------CEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCT------TCEEET
T ss_pred             ---------------------------------ceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCC------ceeecC
Confidence                                             22334567777888888888888888888875421      122233


Q ss_pred             cCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127        296 QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR  333 (633)
Q Consensus       296 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  333 (633)
                      .++.|.|.++..+|.|.|+|.|.|..|..+.++.|.|.
T Consensus       163 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          163 SGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            56689999999999999999999999999999888875

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.84  E-value=2.1e-21  Score=194.97  Aligned_cols=198  Identities=18%  Similarity=0.223  Sum_probs=142.6

Q ss_pred             CCeEEEEEEe--------cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC--CeEEcccceEEE
Q psy15127         58 DDQWKLIAKE--------ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG--RAKILDDRSLQI  127 (633)
Q Consensus        58 ~G~Y~C~a~~--------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~--~~~~~~~~~L~i  127 (633)
                      .|.|+|.+.+        ...+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+...  ......++.|.|
T Consensus       137 ~~~~~C~~~~~l~~l~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i  216 (347)
T 2ifg_A          137 EQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL  216 (347)
T ss_dssp             GGCCCCSSSSCSSCCCCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEE
T ss_pred             ccCCCCCCChHHhcCCcccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceecccceEEE
Confidence            6899998876        335789999999999999999999999999999999999998765321  112334578999


Q ss_pred             ccCCCCCCe-EEEEEEEeCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccC
Q psy15127        128 ENVGPQDEG-LYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLE  206 (633)
Q Consensus       128 ~~v~~~d~G-~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~  206 (633)
                      .+++.+|+| .|+|.|.|..|..+..+.|.|..+ |.+    ....+.+|+.+.|.|. +.|.|.+.|.|+++|..+...
T Consensus       217 ~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~-P~i----~~~~~~~g~~v~l~C~-~~g~P~p~i~W~~~g~~l~~~  290 (347)
T 2ifg_A          217 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFP-ASV----QLHTAVEMHHWCIPFS-VDGQPAPSLRWLFNGSVLNET  290 (347)
T ss_dssp             ESCCSTTTTCCEEECCEETTEECCEEECCCCBEE-EEE----EECCCEESSSEEEEEE-EEEESCCEEEEEETTEECCCC
T ss_pred             eeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCC-Cee----eeccCccCceEEEEEE-eeecCCCcEEEEeCCEECCCC
Confidence            999999999 999999999998888888888776 543    1112345666666666 355566666666665544321


Q ss_pred             CCeeEEeccceeeeEEEeeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccC
Q psy15127        207 SSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPG  286 (633)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~  286 (633)
                      ........                                                             ..+        
T Consensus       291 ~~~~~~~~-------------------------------------------------------------~~~--------  301 (347)
T 2ifg_A          291 SFIFTEFL-------------------------------------------------------------EPA--------  301 (347)
T ss_dssp             SSEEEEEC-------------------------------------------------------------CCC--------
T ss_pred             cceeeEEE-------------------------------------------------------------eec--------
Confidence            11000000                                                             000        


Q ss_pred             CccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEe
Q psy15127        287 NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE  334 (633)
Q Consensus       287 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  334 (633)
                          ......+++|.|.++..+|+|.|+|.|.|..|..+.++.|.|.+
T Consensus       302 ----~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  345 (347)
T 2ifg_A          302 ----ANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD  345 (347)
T ss_dssp             ----TTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCC
T ss_pred             ----CCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecC
Confidence                00001245799999999999999999999999999998888764

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*

Probab=99.84  E-value=5.4e-21  Score=197.97  Aligned_cols=210  Identities=19%  Similarity=0.204  Sum_probs=144.3

Q ss_pred             cccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCccee
Q psy15127        365 RETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVI  444 (633)
Q Consensus       365 ~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~  444 (633)
                      ...+.|.|.|.+.|..+........       .       .-...|++|..+. ..++.+++.|+|++|...+  +.++.
T Consensus       303 ~s~~~Gs~~C~C~ng~~ra~~d~~~-------~-------~ct~pPsaP~nl~-~~vs~tSv~LsW~pP~~~g--G~~i~  365 (536)
T 3fl7_A          303 LPSPEGATSCECEEGFFRAPQDPAS-------M-------PCTRPPSAPHYLT-AVGMGAKVELRWTPPQDSG--GREDI  365 (536)
T ss_dssp             ECCCTTCSSCEECTTCBCCTTCCTT-------S-------CCBCCCCCBSCEE-EECCTTSEEEEECCBSCCC--SCSCC
T ss_pred             CCCCCCccEEEEeccccccCCCccc-------c-------ccccCCCcccceE-EEecCCEEEEEEeCCcCCC--CCcee
Confidence            3567899999999999865321110       0       0011356777774 4688899999999998653  45799


Q ss_pred             EEEEEEEEecCC-CCeE---------EEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCC---CCCCCceeecCCCC
Q psy15127        445 GYTVEYFSSDLQ-TGWV---------VAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIP---SPVSPITRTLGLNS  511 (633)
Q Consensus       445 ~Y~v~~~~~~~~-~~~~---------~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~---s~~~~~~~t~~~~p  511 (633)
                      +|.|+|+..+.. ..|.         ........+.++|.+|.|++.|.|+|+|.|..|.+.+   +... .+.|.+.+ 
T Consensus       366 ~Y~V~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ts~tI~gL~P~T~Y~frV~A~N~~G~~sps~~s~~v-~v~T~~~~-  443 (536)
T 3fl7_A          366 VYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTA-SVSINQTE-  443 (536)
T ss_dssp             EEEEEEEEECC-CCCEEECCTTCEESSCSSSBCSSEEEEECCCTTCEEEEEEEEECTTGGGCSCCCEEEE-EEECCSCC-
T ss_pred             EEEEEEEeccCCCCcccccCCCceEEEeecCCccceeEeCCCCCCCEEEEEEEEEecCCCCCCCCcccee-EEeecccC-
Confidence            999999974321 1221         1111234678999999999999999999999998543   2222 23443333 


Q ss_pred             CCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeecc
Q psy15127        512 LVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKY  591 (633)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~  591 (633)
                        |...                .+..++.++|.|+|++|        ...++.|++| .|+|+..+...      .|.  
T Consensus       444 --Ps~~----------------~~~~~s~tSV~LsW~pP--------~~~ng~I~~Y-~V~y~~~~~~~------~~~--  488 (536)
T 3fl7_A          444 --PPKV----------------RLEGRSTTSLSVSWSIP--------PPQQSRVWKY-EVTYRKKGDSN------SYN--  488 (536)
T ss_dssp             --CCEE----------------EEEECCC-CCEEEEECC--------TTTTTTCSEE-EEEEEEC--CC------CCE--
T ss_pred             --CCCC----------------ceeeccCCeEEEEEECC--------cCCCCcccEE-EEEEEECCCCc------eEE--
Confidence              3333                44677899999999955        5678999999 99998875431      111  


Q ss_pred             ceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        592 NMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       592 ~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                         .  .....++++|++|+|++.|.|+|+|.|.+|.|++|+
T Consensus       489 ---~--v~~~~ts~~l~gL~P~T~Y~frVrA~n~~G~Gp~S~  525 (536)
T 3fl7_A          489 ---V--RRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSK  525 (536)
T ss_dssp             ---E--EEESSSEEECCSCCSSCEEEEEEEEECC---CEECC
T ss_pred             ---E--EcCCCCEEEECCCCCCCEEEEEEEEEcCCcccCCCC
Confidence               1  234678999999999999999999999999999985

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.84  E-value=2.6e-20  Score=181.98  Aligned_cols=192  Identities=18%  Similarity=0.161  Sum_probs=144.3

Q ss_pred             CceEEEcCCCC--CCeEEEEEEe------------cCcCCe-eeeCCCceEEEcCCeEEEEEEEeccCCCe-EEEEe-CC
Q psy15127         47 GSVLGARGALS--DDQWKLIAKE------------ALIKPF-PISEPSDATVLSGSVVEFVCRVGGDPLPT-ILWRR-DD  109 (633)
Q Consensus        47 ~~~L~i~~v~~--~G~Y~C~a~~------------v~~~p~-~~~~~~~~~~~~G~~~~L~C~~~~~p~p~-i~W~~-~~  109 (633)
                      +++|.|.+++.  +|.|+|.+.+            +..+|. +...+....+.+|+.+.|.|.+.+.+.+. +.|++ ++
T Consensus        50 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~  129 (289)
T 3ejj_X           50 GSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGG  129 (289)
T ss_dssp             CCEEEESSCCGGGCEEEEEECCC-----CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGG
T ss_pred             ccEEEEeeeccccCEEEEEEEeccCCcceeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCC
Confidence            46899999998  9999999876            444444 56677888899999999999998877665 99986 66


Q ss_pred             ccCCCC-CeEEcccceEEEccCCCCCCeEEEEEEE-eCCceEEEEEEEEEEe---eccccccCCCceEEecCCcEEEEEe
Q psy15127        110 GKMPTG-RAKILDDRSLQIENVGPQDEGLYICDVE-NLVGSISLRASLTVHL---LRDDFRAEPKDTRVASGETALLECG  184 (633)
Q Consensus       110 ~~i~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~~~-n~~g~~s~~~~l~V~~---~~p~~~~~~~~~~~~~g~~~~l~C~  184 (633)
                      ..+..+ +.....++.|.|.+++.+|+|.|+|.+. +..+..+..+.|.|..   .+|.+...+....+.+|+.+.|.|.
T Consensus       130 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~  209 (289)
T 3ejj_X          130 RQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCS  209 (289)
T ss_dssp             EECCTTCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEE
T ss_pred             eecCCCccEEECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEE
Confidence            666543 4555567899999999999999999999 4455567788888884   2377777777777889999999999


Q ss_pred             CCCCCCCCeEEEEECCEEeccCCCeeE----EeccceeeeEE----EeeeEEEEeecCCCCC
Q psy15127        185 PPKGQPEPTLHWKKNGQFIDLESSKSL----DLSRRTLGWLR----VRPLYWNVARPRANLN  238 (633)
Q Consensus       185 ~~~~~p~~~i~W~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~g~y~C~a~~~~~~~  238 (633)
                      +..+.|.+.+.|++++..+........    ......+.+..    ..|.|+|.|.|..+..
T Consensus       210 ~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  271 (289)
T 3ejj_X          210 ATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTR  271 (289)
T ss_dssp             EEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEE
T ss_pred             eCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCc
Confidence            543389999999999988764322111    00111222221    2489999999998743

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.84  E-value=6.2e-20  Score=170.32  Aligned_cols=170  Identities=19%  Similarity=0.229  Sum_probs=128.5

Q ss_pred             EEcCCeEEEEEEEecc-CCCeEEEEeCCccCCCC-CeEEccc---ceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127         83 VLSGSVVEFVCRVGGD-PLPTILWRRDDGKMPTG-RAKILDD---RSLQIENVGPQDEGLYICDVENLVGSISLRASLTV  157 (633)
Q Consensus        83 ~~~G~~~~L~C~~~~~-p~p~i~W~~~~~~i~~~-~~~~~~~---~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V  157 (633)
                      ...++.+.|.|.+.+. |.+.++|+|+|..+..+ +.....+   ..|.|.+++.+|+|.|+|.+.|..+.....+.|.|
T Consensus        14 ~c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v   93 (212)
T 2r15_A           14 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG   93 (212)
T ss_dssp             EECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECH
T ss_pred             EEcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEE
Confidence            3467888899988774 58899999999988764 3333222   35999999999999999999998888777777766


Q ss_pred             Ee--------------------eccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccce
Q psy15127        158 HL--------------------LRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRT  217 (633)
Q Consensus       158 ~~--------------------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~  217 (633)
                      ..                    .++.+...+....+.+|+.+.|.|. ..|.|.+.+.|++++..+.......+.     
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~-~~g~p~p~v~W~~~~~~~~~~~~~~~~-----  167 (212)
T 2r15_A           94 QAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCN-VWGDPPPEVSWLKNEKALAQTDHCNLK-----  167 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEE-EECSSCCEEEEEETTEEECCCSSEEEE-----
T ss_pred             eeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEE-EcCCCCceEEEEECCeECccCCCEEEE-----
Confidence            52                    2122333455678899999999999 578888889999888766532211000     


Q ss_pred             eeeEEEeeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEE-cc
Q psy15127        218 LGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV-TQ  296 (633)
Q Consensus       218 ~~~~~~~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~-~~  296 (633)
                                                                                                 .. ..
T Consensus       168 ---------------------------------------------------------------------------~~~~~  172 (212)
T 2r15_A          168 ---------------------------------------------------------------------------FEAGR  172 (212)
T ss_dssp             ---------------------------------------------------------------------------EETTT
T ss_pred             ---------------------------------------------------------------------------EcCCC
Confidence                                                                                       00 11


Q ss_pred             CceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127        297 EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR  333 (633)
Q Consensus       297 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  333 (633)
                      ...|.|.++..+|.|.|+|.|.|..|..+..+.|.|.
T Consensus       173 ~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  209 (212)
T 2r15_A          173 TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF  209 (212)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEE
Confidence            2379999999999999999999999999999888886

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.84  E-value=1.4e-19  Score=173.94  Aligned_cols=181  Identities=15%  Similarity=0.143  Sum_probs=137.8

Q ss_pred             CceEEEcCCCC--CCeEEEEEEe----------cCcCCeeeeCCCceEEEcCCeEEEEEEE-eccCCCeEEEEeCCccCC
Q psy15127         47 GSVLGARGALS--DDQWKLIAKE----------ALIKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMP  113 (633)
Q Consensus        47 ~~~L~i~~v~~--~G~Y~C~a~~----------v~~~p~~~~~~~~~~~~~G~~~~L~C~~-~~~p~p~i~W~~~~~~i~  113 (633)
                      ++.|.|.+++.  +|.|+|.+.+          +..++ +...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.
T Consensus        47 ~~~l~i~~~~~~d~G~Y~C~~~~~~~s~~~~l~v~~~~-~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~  125 (262)
T 3rjd_A           47 TPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGW-LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFK  125 (262)
T ss_dssp             SSEEEESSCCGGGCEEEEEEESSSCCCCCEEEEEECSS-EEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEE
T ss_pred             CCeEEEecCCcccCeEEEEEEecCCccccEEEEEeccc-eEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccc
Confidence            56799999998  9999999988          33333 3445556778999999999999 677888999999998763


Q ss_pred             CCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEee--ccccccCCCceEEecCCcEEEEEeCCCCCCC
Q psy15127        114 TGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLL--RDDFRAEPKDTRVASGETALLECGPPKGQPE  191 (633)
Q Consensus       114 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~  191 (633)
                      .    ...+..|.|.+++.+|+|.|+|.+.|..+..+..+.|.|...  +|.+...+ ...+.+|+.+.|.|. ..+.|.
T Consensus       126 ~----~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~-~~~~~~g~~~~l~C~-~~~~p~  199 (262)
T 3rjd_A          126 F----FHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASV-TSPLLEGNLVTLSCE-TKLLLQ  199 (262)
T ss_dssp             E----EEECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESS-CSSEETTCCEEEEEE-CCCCCC
T ss_pred             c----cCCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeecC-ceeecCCCeEEEEeE-cccCCC
Confidence            2    123568999999999999999999999988888889999864  24444444 556889999999999 566664


Q ss_pred             -C----eEEEEECCEEeccCC-CeeEEeccceeeeEEEeeeEEEEeecCCCC
Q psy15127        192 -P----TLHWKKNGQFIDLES-SKSLDLSRRTLGWLRVRPLYWNVARPRANL  237 (633)
Q Consensus       192 -~----~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~y~C~a~~~~~~  237 (633)
                       +    .+.|++++..+.... ...+.+.......   .|.|+|.|.|..+.
T Consensus       200 ~p~~~~~~~w~~~~~~~~~~~~~~~L~i~~v~~~d---~G~Y~C~a~n~~G~  248 (262)
T 3rjd_A          200 RPGLQLYFSFYMGSKTLRGRNTSSEYQILTARRED---SGLYWCEAATEDGN  248 (262)
T ss_dssp             -----EEEEEEETTEEEEEEESCCEEEESSCCGGG---CEEEEEEEEETTSS
T ss_pred             CCCccEEEEEEeCCcEecccCCCceEEEEEechhh---CeEEEEEEEcccCc
Confidence             4    478999999876422 2233333332222   58999999998884

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.83  E-value=5.3e-20  Score=164.26  Aligned_cols=165  Identities=21%  Similarity=0.261  Sum_probs=116.8

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccC-CCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDP-LPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p-~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      .+|.+...|....+.+|+.+.|.|.+.+.| .+.+.|+|++..+...      ...+.|.+++.+|+|.|+|.+.+..  
T Consensus         3 p~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~------~~~~~~~~~~~~d~G~Y~C~~~~~~--   74 (170)
T 3ry4_A            3 PKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH------TQPSYRFKANNNDSGEYTCQTGQTS--   74 (170)
T ss_dssp             CBCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC------CSSEEEEECCGGGCEEEEEEETTSB--
T ss_pred             CCCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC------ccceEEEecccccCeEEEEEEeCCC--
Confidence            467888888888899999999999998876 5689999999988653      3467788999999999999998643  


Q ss_pred             EEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEEeeeEE
Q psy15127        149 ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYW  228 (633)
Q Consensus       149 ~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~  228 (633)
                      .+..+.|.|..+ +.+.. +....+.+|+.+.|.|.+..+.|.+.+.|+                               
T Consensus        75 ~s~~~~l~v~~~-~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~-------------------------------  121 (170)
T 3ry4_A           75 LSDPVHLTVLFE-WLVLQ-TPHLEFQEGETIMLRCHSWKDKPLVKVTFF-------------------------------  121 (170)
T ss_dssp             CCCCEEEEEECC-SEEEE-CSCSEECTTCCEEEEEEEGGGCCEEEEEEE-------------------------------
T ss_pred             ceEeEEEEEECC-ceEec-CCCceeecCCeEEEEEECCCCCCCceEEEE-------------------------------
Confidence            344567777765 32222 223345566666666663233344445554                               


Q ss_pred             EEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCC
Q psy15127        229 NVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKE  308 (633)
Q Consensus       229 C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  308 (633)
                                                                     ++|..+..          ...+..|.|.++..+
T Consensus       122 -----------------------------------------------~~g~~~~~----------~~~~~~L~i~~v~~~  144 (170)
T 3ry4_A          122 -----------------------------------------------QNGKSQKF----------SHLDPTFSIPQANHS  144 (170)
T ss_dssp             -----------------------------------------------ETTEEEEE----------ESSCCEEEESSCCGG
T ss_pred             -----------------------------------------------ECCeEccc----------cCCCCeEEEEecccc
Confidence                                                           44443321          113457999999999


Q ss_pred             CCeEEEEEEEeCCce-eEEEEEEEE
Q psy15127        309 DAGFFVCSALSVAGS-TTVRAFLQV  332 (633)
Q Consensus       309 d~G~Y~C~a~n~~g~-~~~~~~l~v  332 (633)
                      |+|.|+|.|.|..|. .+..+.|.|
T Consensus       145 d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          145 HSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCEEEEEEEEeCcCccccccEEEEE
Confidence            999999999999986 344455544

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A

Probab=99.83  E-value=2.2e-20  Score=173.75  Aligned_cols=184  Identities=21%  Similarity=0.176  Sum_probs=133.2

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecC-CCCCeEEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDL-KPDTSYMFIVR  487 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L-~p~~~Y~~~v~  487 (633)
                      .|++|..+.+......++.|+|+++...   + ...+|.|+|+..+.. .+.........+.++|.+| .+++.|.|+|.
T Consensus         7 pP~~P~~l~~~~~~~~sv~l~W~~p~~~---~-~~~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~i~~L~~~~t~Y~~~V~   81 (215)
T 1bqu_A            7 PPEKPKNLSCIVNEGKKMRCEWDGGRET---H-LETNFTLKSEWATHK-FADCKAKRDTPTSCTVDYSTVYFVNIEVWVE   81 (215)
T ss_dssp             CCCCCEEEEEEEETTSCCEEEEECCSCC---S-SCCEEEEEEEETTEE-CCCEECCSSCTTEEECSSCCCTTSCEEEEEE
T ss_pred             CCCCCEeeEeEECCCCcEEEEcCCCCCC---C-CCceEEEEEEEcCCC-ccccccccCCcceEEEcCCccccccEEEEEE
Confidence            4667888888888889999999999854   2 347999999865421 1211112234578999999 99999999999


Q ss_pred             EEeccccCCCCCCCCceeecC-CCCCCCcchHHHHHHHhCCceEEeeeeeec--ccceEEEEEEEecCCCcccccchhhh
Q psy15127        488 AENSHGLGIPSPVSPITRTLG-LNSLVPQHLLDEARARLGTKVVNLRELIPT--ASTAVRITWEVSWGSVPQHLLDEARA  564 (633)
Q Consensus       488 a~n~~G~g~~s~~~~~~~t~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~si~v~W~~p~~~~p~~~~~~~~~  564 (633)
                      |.|..|.+. +... .+.+.. ..|.+|.++                .+..+  +.+++.|+|++|        ...++.
T Consensus        82 A~n~~G~~~-s~~~-~~~~~~~~~p~pP~~~----------------~~~~~~~~~~sv~l~W~~p--------~~~~~~  135 (215)
T 1bqu_A           82 AENALGKVT-SDHI-NFDPVYKVKPNPPHNL----------------SVINSEELSSILKLTWTNP--------SIKSVI  135 (215)
T ss_dssp             EEETTEEEE-CCCE-EECGGGSEECCCCEEE----------------EEECC--CCSCEEEEEECC--------GGGGTS
T ss_pred             EEecccCcc-CCcE-EecccccCcCCCCCce----------------EEEEecCCCceEEEEEeCC--------CCCCcc
Confidence            999999986 3222 232222 244444443                55544  779999999965        345788


Q ss_pred             hcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        565 RLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       565 i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.+| .|+|+..+...       |......  ......++++|.+|++++.|.|+|+|.|..|.|++|+
T Consensus       136 i~~Y-~v~y~~~~~~~-------~~~~~~~--~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~g~~S~  194 (215)
T 1bqu_A          136 ILKY-NIQYRTKDAST-------WSQIPPE--DTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSD  194 (215)
T ss_dssp             CEEE-EEEEEETTCSS-------CEECCGG--GGCSCCSEEEECSCCSSEEEEEEEEEEETTSCSCCCC
T ss_pred             eEEE-EEEEccCCCCC-------ceEeccc--cccCccceEEeCCCCCCCEEEEEEEEccCCCCCccCC
Confidence            9999 99999876433       6533211  1245678999999999999999999999999988764

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.83  E-value=1.1e-20  Score=186.64  Aligned_cols=186  Identities=13%  Similarity=0.139  Sum_probs=135.2

Q ss_pred             CceEEEcCCCC--CCeEEEEEEe-------------cCcCC--eeeeCCCceEEEcCCeEEEEEEE-eccCCCeEEEEeC
Q psy15127         47 GSVLGARGALS--DDQWKLIAKE-------------ALIKP--FPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRD  108 (633)
Q Consensus        47 ~~~L~i~~v~~--~G~Y~C~a~~-------------v~~~p--~~~~~~~~~~~~~G~~~~L~C~~-~~~p~p~i~W~~~  108 (633)
                      +++|.|.+++.  +|.|+|.|.+             +...|  .+...+.......|+.+.|.|.+ .|.|.+.|+|+++
T Consensus        73 ~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~  152 (308)
T 4fom_A           73 DATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGD  152 (308)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCC
T ss_pred             ceEEEEccCCHHHCEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEEC
Confidence            46799999999  9999999987             22233  33455566666778999999986 5889999999999


Q ss_pred             CccCCCCCeEEc-----ccceEEEccCCCCCCeEEEEEEEeCCce--EEEEEEEEEEeeccccccCCC-ceEEecCCcEE
Q psy15127        109 DGKMPTGRAKIL-----DDRSLQIENVGPQDEGLYICDVENLVGS--ISLRASLTVHLLRDDFRAEPK-DTRVASGETAL  180 (633)
Q Consensus       109 ~~~i~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~n~~g~--~s~~~~l~V~~~~p~~~~~~~-~~~~~~g~~~~  180 (633)
                      +..+........     ..+.|.|.++..+|+|.|+|.|.|..+.  .+..+.|.|..+ |.+...+. ...+..|+.+.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~-P~~~~~~~~~~~~~~g~~v~  231 (308)
T 4fom_A          153 LGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYA-PEVSVTGYDGNWFVGRKGVN  231 (308)
T ss_dssp             SSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEE-EEECCBCCCSCEETTCCSCE
T ss_pred             CcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecC-CeeEEcccceeeeeccccEE
Confidence            988754322221     1247999999999999999999998765  456677777777 66554443 45667889999


Q ss_pred             EEEeCCCCCCCC-eEEEEECCEEeccCCC----eeEEeccceeeeEEEeeeEEEEeecCCCC
Q psy15127        181 LECGPPKGQPEP-TLHWKKNGQFIDLESS----KSLDLSRRTLGWLRVRPLYWNVARPRANL  237 (633)
Q Consensus       181 l~C~~~~~~p~~-~i~W~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~y~C~a~~~~~~  237 (633)
                      |.|. +.|.|.+ .+.|+|++..+.....    ..+.+.....   ...|.|+|.|.|..|.
T Consensus       232 l~C~-~~g~P~p~~v~W~k~~~~~~~~~~~~~~~~l~i~~v~~---~d~G~Y~C~A~N~~G~  289 (308)
T 4fom_A          232 LKCN-ADANPPPFKSVWSRLDGQWPDGLLASDNTLHFVHPLTF---NYSGVYICKVTNSLGQ  289 (308)
T ss_dssp             EECC-EEEESCEEEEECCBSSSCCCSSCBCSTTEEECCSCCCS---CCCSEEEEEEEETTEE
T ss_pred             EEEE-EecCCCCcEEEEEECCeECCCcEEEcCCeEEEECCCCh---hhCEEEEEEEEeCCCc
Confidence            9999 5888888 7999999877643211    1111111111   2358999999998874

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1

Probab=99.83  E-value=3.9e-19  Score=173.05  Aligned_cols=207  Identities=18%  Similarity=0.174  Sum_probs=156.8

Q ss_pred             CceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCC
Q psy15127        357 LRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPR  436 (633)
Q Consensus       357 ~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~  436 (633)
                      ..+.+.+|.....|.+++.|.|..|... ...+.+...               |.+|..+.+.....+++.|+|.++.  
T Consensus        68 ~~~~i~~L~p~t~Y~~~V~a~~~~g~s~-~~~~~~~t~---------------p~~P~~l~~~~~~~~sv~l~W~~p~--  129 (283)
T 1tdq_A           68 SQYSVQALRPGSRYEVSISAVRGTNESD-ASSTQFTTE---------------IDAPKNLRVGSRTATSLDLEWDNSE--  129 (283)
T ss_dssp             SEEEECSCCTTCEEEEEEEEEETTEECC-CEEEEEECC---------------CCCCEEEEEEEECSSCEEEEEECCS--
T ss_pred             CEEEecCCCCCCEEEEEEEEECCCCCCC-CeeEEEECC---------------CCCCCceEEEecCCCeEEEEecCCC--
Confidence            3456779999999999999999887653 233333322               3457777888888999999999986  


Q ss_pred             CCCCcceeEEEEEEEEecCCCCeEEEEEeee---eceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCceeecCCCCCC
Q psy15127        437 GGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT---STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLV  513 (633)
Q Consensus       437 ~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~---~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~~p~~  513 (633)
                          +.+.+|.|+|+..+. ..+........   ...++|.+|.|++.|.|+|+|.|..|.|.+..    ..+ ...|.+
T Consensus       130 ----~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~~----~~~-~t~~~~  199 (283)
T 1tdq_A          130 ----AEAQEYKVVYSTLAG-EQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPAT----MNA-RTELDS  199 (283)
T ss_dssp             ----SCCSEEEEEEEETTC-CCCEEEEEECCSSSEEEEEECSCCTTCEEEEEEEEEETTEECCCEE----EEE-ECCCCC
T ss_pred             ----CCccEEEEEEEeCCC-CcceEEECCCCCcccceEEEecCCCCCEEEEEEEEEeCCCCCcceE----EEe-cCCCCC
Confidence                368999999988754 34433333334   67899999999999999999999999886532    222 223334


Q ss_pred             CcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccce
Q psy15127        514 PQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNM  593 (633)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~  593 (633)
                      |.++                .+..++.+++.|+|++|           ++.+.+| .|+|+..+...        .    
T Consensus       200 P~~l----------------~~~~~~~~sv~l~W~~p-----------~~~i~~Y-~v~~~~~~~~~--------~----  239 (283)
T 1tdq_A          200 PRDL----------------MVTASSETSISLIWTKA-----------SGPIDHY-RITFTPSSGIS--------S----  239 (283)
T ss_dssp             CEEE----------------EEEEECSSCEEEEEECC-----------CSCCSEE-EEEEECSSSCC--------E----
T ss_pred             CCcc----------------EEeEecCCEEEEEEeCC-----------CCcccEE-EEEEEcCCCCe--------e----
Confidence            4444                77888899999999942           4789999 99998765432        1    


Q ss_pred             eEeecCCccceEEeeccccceeEEEEEeccccccccccC
Q psy15127        594 ATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       594 ~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s  632 (633)
                       .+......++++|.+|+|++.|.|+|+|.|..|+|+++
T Consensus       240 -~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~  277 (283)
T 1tdq_A          240 -EVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLES  277 (283)
T ss_dssp             -EEEEESSCSEEEECCCCTTCCEEEEEEEEETTEECCCE
T ss_pred             -EEEeCCCccEEEECCCCCCCEEEEEEEEEcCCCCCcce
Confidence             22334668899999999999999999999999999986

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.83  E-value=2.7e-20  Score=170.44  Aligned_cols=128  Identities=22%  Similarity=0.268  Sum_probs=91.8

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEE---cccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKI---LDDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      ..+|.|...|.. .+.+|++++|.|.+.+ +.+.+.|+|++..+.......   ...+.|.|.+++.+|+|.|+|.|.|.
T Consensus         3 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (196)
T 3p2t_A            3 LPKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSP   80 (196)
T ss_dssp             BCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCC
Confidence            357888888877 7999999999999987 678999999998875422111   23468999999999999999999999


Q ss_pred             Cce--EEEEEEEEEEee--ccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCE
Q psy15127        146 VGS--ISLRASLTVHLL--RDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ  201 (633)
Q Consensus       146 ~g~--~s~~~~l~V~~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~  201 (633)
                      .|.  .+..+.|.|...  +|.+...+.. .+.+|+.++|.|.+ .+ +.+.+.|+|+|.
T Consensus        81 ~g~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~  137 (196)
T 3p2t_A           81 VGWSQPSDPLELVMTGAYSKPTLSALPSP-LVTSGKSVTLLCQS-RS-PMDTFLLCKERA  137 (196)
T ss_dssp             TEEBCCCCCEEEEEECSSCCCEEEEESCS-EECTTCCEEEEEEE-EE-EEEEEEEEETTC
T ss_pred             CcccCCCccEEEEecCCCCCCEEEeCCcc-eecCCCeEEEEEec-CC-CCCEEEEEeCCC
Confidence            873  466677777653  2333333332 55677777777763 33 233566666554

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.83  E-value=1.4e-19  Score=178.69  Aligned_cols=285  Identities=17%  Similarity=0.190  Sum_probs=168.1

Q ss_pred             CCceEEEcCCeEEEEEEEecc-----CCCeEEEEeCCccCCCCCeEEcc-c---ceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         78 PSDATVLSGSVVEFVCRVGGD-----PLPTILWRRDDGKMPTGRAKILD-D---RSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        78 ~~~~~~~~G~~~~L~C~~~~~-----p~p~i~W~~~~~~i~~~~~~~~~-~---~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      |.+..+..|++++|.|.+.+.     |.+.|.|+++|..+..++..... +   +.|+|.+++..|+|.|.|.+.+..+.
T Consensus         7 p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~~   86 (313)
T 2d9q_B            7 VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQ   86 (313)
T ss_dssp             ESCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTCEECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSEE
T ss_pred             CCCcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCccceEEEecCeEEEEEEEeccCCCccceEEeeecCCCce
Confidence            456779999999999999886     56889999999988655332222 2   56999999999999999998766555


Q ss_pred             EEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCC-CCCeEEEEECCEEeccCCCeeEEeccceeeeEEEeeeE
Q psy15127        149 ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQ-PEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLY  227 (633)
Q Consensus       149 ~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y  227 (633)
                      ....+.|.|..+ |.             ....|.|. ..+. ....+.|...... .. .                    
T Consensus        87 ~~~~~~l~v~~~-P~-------------~P~~l~c~-~~~~~~~~~~~W~~~~~~-~~-~--------------------  129 (313)
T 2d9q_B           87 ILDQVELRAGYP-PA-------------IPHNLSCL-MNLTTSSLICQWEPGPET-HL-P--------------------  129 (313)
T ss_dssp             EEEEEEEEECCC-CC-------------CCEEEEEE-EETTTTEEEEEEECCSCC-SS-C--------------------
T ss_pred             eEEEEEEccCCC-CC-------------CCccceee-ECCCCccEEEEecCCCCC-CC-c--------------------
Confidence            556666766654 22             23456676 2322 2345556432110 00 0                    


Q ss_pred             EEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCC
Q psy15127        228 WNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQK  307 (633)
Q Consensus       228 ~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  307 (633)
                                                  ....|.+.            +.+.                        ....
T Consensus       130 ----------------------------~~Y~l~~~------------~~~~------------------------~~~~  145 (313)
T 2d9q_B          130 ----------------------------TSFTLKSF------------KSRG------------------------NCQT  145 (313)
T ss_dssp             ----------------------------CEEEEEEE------------ECCT------------------------TSCS
T ss_pred             ----------------------------eeEEEEEE------------ecCC------------------------Cccc
Confidence                                        00001111            0000                        0000


Q ss_pred             CCCeEEEEEEEeCCceeEEEEEEEEEecccCCCceEEeCCCccccCCCCCceEEecccccCCEEEEEEEEcCCcceeEEE
Q psy15127        308 EDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSA  387 (633)
Q Consensus       308 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~p~~~~~~~~~~~g~p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~  387 (633)
                      .....+.|..  ..+..  ...+                             ....+.....|.++|.|.|..|..... 
T Consensus       146 ~~~~~~~~~~--~~~~~--~~~~-----------------------------~~~~L~~~~~Y~f~V~A~N~~G~~~s~-  191 (313)
T 2d9q_B          146 QGDSILDCVP--KDGQS--HCSI-----------------------------PRKHLLLYQNMGIWVQAENALGTSMSP-  191 (313)
T ss_dssp             CCCCEEEECC--CTTCS--EEEE-----------------------------EGGGCCSSSCEEEEEEEEETTEEEECC-
T ss_pred             CCcccccCCC--CCCCc--EEEE-----------------------------CccccccceeEEEEEEEECCCCCccCc-
Confidence            0112223321  00110  0011                             011356677889999999999975321 


Q ss_pred             EEEeecCCCCCceecCCCCCCCCCCCCCcEEEEe------eCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEE
Q psy15127        388 SLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNT------TRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVV  461 (633)
Q Consensus       388 ~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~------~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~  461 (633)
                      .+.+...           ....|.+|..+.+...      ..+.+.|+|++|...   +..+++|.|+|+.......|..
T Consensus       192 ~~~~~~~-----------~~~~p~pP~~~~~~~~~~~~~~~~~~l~l~W~~p~~~---~~~~l~Y~v~y~~~~~~~~w~~  257 (313)
T 2d9q_B          192 QLCLDPM-----------DVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPG---LHINQKCELRHKPQRGEASWAL  257 (313)
T ss_dssp             CEEECGG-----------GGEECCCCEEEECCC-------CCSCEEEEEECCGGG---TTSCEEEEEEEEESSSCCCCEE
T ss_pred             cEEEehh-----------heeccCcCceeEEEEecccccCCCCeEEEEECCCCCC---CceeEEEEEEEccCCCCCCcEE
Confidence            1222111           0123455655544433      467999999998742   3446899999994333456775


Q ss_pred             EEEe-eeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCC--ceeecCCCC
Q psy15127        462 AAHR-ITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP--ITRTLGLNS  511 (633)
Q Consensus       462 ~~~~-~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~--~~~t~~~~p  511 (633)
                      .... .....++|.+|.|++.|.|+|+|.|..|.|.+|.++.  .++|.+.+|
T Consensus       258 ~~~~~~~~~~~~l~~L~p~t~Y~~rVra~~~~g~G~wS~wS~~~~~~T~~~~P  310 (313)
T 2d9q_B          258 VGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAA  310 (313)
T ss_dssp             EEEECSCEEEEEECSCCSCCCEEEEEEEEECSSCCCCCCCCCCEEECCCC---
T ss_pred             cccccCcceEEEEeCCCCCCeEEEEEEeeECCCCCccCCCCCccceeCCccCC
Confidence            4322 2456799999999999999999999999998776652  345555443

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens}

Probab=99.83  E-value=4.2e-20  Score=169.84  Aligned_cols=180  Identities=16%  Similarity=0.139  Sum_probs=130.4

Q ss_pred             CCCCcEEEEee--CCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEE
Q psy15127        412 PPAAPVILNTT--RGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAE  489 (633)
Q Consensus       412 ~p~~~~~~~~~--~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~  489 (633)
                      +|..+.+..+.  .+++.|+|.+|.     ++.+.+|.|+|+..+....|...........++|.+|.|++.|.|+|+|.
T Consensus         2 ~P~~l~v~~v~~~~~si~l~W~~p~-----~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   76 (201)
T 2ha1_A            2 GPVEVFITETPSQPNSHPIQWNAPQ-----PSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISI   76 (201)
T ss_dssp             CCCEEECCSCSCCSSCEEEEEECCS-----STTCCEEEEEEEETTCSSCCEEEEECTTCCEEEECSCCTTEEEEEEEEEE
T ss_pred             CceeEEEEecCCCCCEEEEEEeCCC-----CCCceEEEEEEEECCCCCceEEEecCCCccEEEecCCCCCCEEEEEEEEE
Confidence            35566666666  889999999984     56899999999986554567655555557899999999999999999999


Q ss_pred             eccccCCCCCCCCceee-----------cCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccc
Q psy15127        490 NSHGLGIPSPVSPITRT-----------LGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHL  558 (633)
Q Consensus       490 n~~G~g~~s~~~~~~~t-----------~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~  558 (633)
                      |..|.|.++..  .+.|           ....|.+++.++       +.   ++ ++..++.+++.|+|++|        
T Consensus        77 n~~G~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~p~~~-------~~---~l-~~~~~~~~sv~l~W~~p--------  135 (201)
T 2ha1_A           77 QQYGHQEVTRF--DFTTTSTSTPVTSNTVTGETTPFSPLV-------AT---SE-SVTEITASSFVVSWVSA--------  135 (201)
T ss_dssp             CTTSCEEEEEE--EEEECCCCCTTCSCCCCCSCCCCCCSC-------SC---CS-SCCCCCSCCEEEECCCS--------
T ss_pred             ecccccCceeE--EEecCCCCCCcccccccCCCCCCCCcc-------CC---ce-EEEecCCCeEEEEEeCC--------
Confidence            99999875311  1111           111222222110       00   00 57778899999999943        


Q ss_pred             cchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccC
Q psy15127        559 LDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       559 ~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s  632 (633)
                         .+.+.+| .|.|+......       |.    ..+...+..++++|.+|+|++.|.|+|+|.|..|+|++.
T Consensus       136 ---~~~i~~Y-~v~~~~~~~~~-------~~----~~~~v~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~~~~~  194 (201)
T 2ha1_A          136 ---SDTVSGF-RVEYELSEEGD-------EP----QYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLI  194 (201)
T ss_dssp             ---CTTEEEE-EEEEEETTTCC-------CC----EEEEEETTCCEEEECSCCTTCEEEEEEEEEETTSCEEEE
T ss_pred             ---CCCccEE-EEEEEECCCCC-------ce----eEEEcCCceeEEEeCCCCCCCEEEEEEEEEcCCCCcccE
Confidence               3589999 99998754432       22    122334678999999999999999999999999999874

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.83  E-value=7e-20  Score=167.94  Aligned_cols=130  Identities=22%  Similarity=0.287  Sum_probs=97.1

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCC---CCeEEcccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT---GRAKILDDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      ..+|.|...|. ..+.+|++++|.|.+.+.|. .+.|+|++..+..   ........+.|.|.+++.+|+|.|+|.+.|.
T Consensus         3 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (198)
T 1ugn_A            3 LPKPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSD   80 (198)
T ss_dssp             CCCCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECC
Confidence            45788888876 47999999999999988765 6999999987732   1111234578999999999999999999998


Q ss_pred             C-c--eEEEEEEEEEEee--ccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEe
Q psy15127        146 V-G--SISLRASLTVHLL--RDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI  203 (633)
Q Consensus       146 ~-g--~~s~~~~l~V~~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~  203 (633)
                      . |  ..+..+.|.|...  +|.+...+ ...+.+|+.++|.|. ..+. .+.+.|+|+|..+
T Consensus        81 ~~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~-~~~~-~~~v~W~k~g~~~  140 (198)
T 1ugn_A           81 TAGRSESSDPLELVVTGAYIKPTLSAQP-SPVVNSGGNVTLQCD-SQVA-FDGFILCKEGEDE  140 (198)
T ss_dssp             TTEECCCCCCEEEEEECSSCCCEEEEES-CSEEETTCCEEEEEE-CSSC-CSEEEEEEC----
T ss_pred             CCCcccCCccEEEEEcccccCCccccCC-ccccCCCCcEEEEEe-cCCC-CcEEEEEECCCcc
Confidence            7 5  3466788888873  13333333 357889999999999 4565 6799999987754

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.83  E-value=2.1e-20  Score=187.28  Aligned_cols=221  Identities=15%  Similarity=0.168  Sum_probs=152.5

Q ss_pred             CCCCccccccceeeEEEEecccCCCCCceEEeeCceEEEcCCCC--CCeEEEEEEe------------cCcCCeee--eC
Q psy15127         14 SSPRAEIEPATRTNRVSISGDPGFDSRRSRSIFGSVLGARGALS--DDQWKLIAKE------------ALIKPFPI--SE   77 (633)
Q Consensus        14 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~--~G~Y~C~a~~------------v~~~p~~~--~~   77 (633)
                      +.|.+.|.|+.......+.+   ....++. ..+++|.|.+++.  +|.|+|.+.|            +..+|...  ..
T Consensus        51 ~~p~~~v~W~k~~~~~~~~~---~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~  126 (339)
T 3o4o_C           51 VSPRINLTWHKNDSARTVPG---EEETRMW-AQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFI  126 (339)
T ss_dssp             TSSCCBCCCEESSCCSCCSC---CSSSCEE-EETTEEEESSBCTTCCEEEECCEEETTEEEEEEEEEEEECSCGGGHHHH
T ss_pred             CCCCceEEEEECCCCcccCc---cccccEE-eeCCeEEECCCCcccCEEEEEEEECCcceEEEEEEEEEEcCCCcccccc
Confidence            66788888654332111111   1123443 5678999999998  9999999998            22222110  11


Q ss_pred             CCceEEEcCCeEEEEEE-----EeccCCCeEEEEeCCccCCCC--CeEEccc-ceEEEccCCCCCCeEEEEEEEeCCc--
Q psy15127         78 PSDATVLSGSVVEFVCR-----VGGDPLPTILWRRDDGKMPTG--RAKILDD-RSLQIENVGPQDEGLYICDVENLVG--  147 (633)
Q Consensus        78 ~~~~~~~~G~~~~L~C~-----~~~~p~p~i~W~~~~~~i~~~--~~~~~~~-~~L~i~~v~~~d~G~Y~C~~~n~~g--  147 (633)
                      .....+.+|+.+.|.|.     +.+.|.+.+.|+|++..+...  +.....+ +.|.|.+++.+|+|.|+|.|.|..|  
T Consensus       127 ~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  206 (339)
T 3o4o_C          127 SYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQ  206 (339)
T ss_dssp             CEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTB
T ss_pred             ccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCe
Confidence            12346889999999999     788899999999999988654  3333333 5899999999999999999999876  


Q ss_pred             --eEEEEEEEEEEee----ccccccCCCceEEecCCcEEEEEeCC--CCCC-CCeEEEEECCEEeccCCC-------eeE
Q psy15127        148 --SISLRASLTVHLL----RDDFRAEPKDTRVASGETALLECGPP--KGQP-EPTLHWKKNGQFIDLESS-------KSL  211 (633)
Q Consensus       148 --~~s~~~~l~V~~~----~p~~~~~~~~~~~~~g~~~~l~C~~~--~~~p-~~~i~W~~~~~~~~~~~~-------~~~  211 (633)
                        ..+..+.|.|...    +|.+...+....+.+|+.+.|.|.+.  .|.| .+.+.|++++..+.....       ...
T Consensus       207 ~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~  286 (339)
T 3o4o_C          207 QYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQ  286 (339)
T ss_dssp             CCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCE
T ss_pred             EEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceE
Confidence              4677888888753    25566666667889999999999942  7888 889999999987643211       011


Q ss_pred             Eec-cc------eeeeE----EEe-eeEEEEeecCCCCC
Q psy15127        212 DLS-RR------TLGWL----RVR-PLYWNVARPRANLN  238 (633)
Q Consensus       212 ~~~-~~------~~~~~----~~~-g~y~C~a~~~~~~~  238 (633)
                      ... .+      .|.+.    ... |.|+|.|.|..|..
T Consensus       287 ~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~  325 (339)
T 3o4o_C          287 EYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQ  325 (339)
T ss_dssp             ECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEE
T ss_pred             EecccCceEEEEEEEEEEechhhcCccEEEEEEeccCce
Confidence            111 11      22222    123 78999999998854

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.83  E-value=6.1e-20  Score=168.02  Aligned_cols=130  Identities=20%  Similarity=0.266  Sum_probs=90.5

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCe---EEcccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRA---KILDDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~---~~~~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      ..+|.|...|.. .+.+|++++|.|.+.+.|. .+.|+|++..+.....   ....++.|.|.+++.+|+|.|+|.|.|.
T Consensus         3 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (196)
T 2d3v_A            3 LSKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSP   80 (196)
T ss_dssp             CCBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCC
Confidence            467888888874 7999999999999987765 9999999987753211   1223568999999999999999999998


Q ss_pred             CceE--EEEEEEEEEee--ccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEe
Q psy15127        146 VGSI--SLRASLTVHLL--RDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI  203 (633)
Q Consensus       146 ~g~~--s~~~~l~V~~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~  203 (633)
                      .|..  +..+.|.|...  +|.+...+ ...+.+|+.++|.|. ..+.| +.+.|+|+|..+
T Consensus        81 ~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~-~~~~p-~~~~W~k~g~~~  139 (196)
T 2d3v_A           81 AGWSEPSDPLELVVTGFYNKPTLSALP-SPVVTSGENVTLQCG-SRLRF-DRFILTEEGDHK  139 (196)
T ss_dssp             TEECBCCCCEEEEEECSSCCCEEEC------------CEEEEE-ESSCC-SEEEEEEC---C
T ss_pred             CCcCCcCccEEEEecCCCCCCeEEccC-CccccCCCcEEEEEE-cCCCC-CEEEEEccCCcc
Confidence            7642  56677888763  24444333 357889999999999 56767 889999987654

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.82  E-value=1.4e-18  Score=172.31  Aligned_cols=123  Identities=15%  Similarity=0.170  Sum_probs=89.1

Q ss_pred             cCCEEEEEEEEcCCcceeE-EEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEee--CCeEEEEeCCCCCCCCCCcce
Q psy15127        367 TDSGLYTCTASSESGETSW-SASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTT--RGSVTLGWGEPEPRGGGVAPV  443 (633)
Q Consensus       367 ~d~g~y~c~a~n~~g~~~~-~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~--~~~i~l~W~~~~~~~~~~~~i  443 (633)
                      ...|.|+|.|.|..|.... ...+.+..             ...|.+|..+.+....  ++++.|+|++|.... .++.+
T Consensus       166 ~~~Y~f~v~A~N~~G~~~s~~~~~~~~~-------------~v~P~pP~~l~v~~~~~~~~sv~lsW~~p~~~~-~~~~~  231 (325)
T 1n26_A          166 SSFYIVSMCVASSVGSKFSKTQTFQGCG-------------ILQPDPPANITVTAVARNPRWLSVTWQDPHSWN-SSFYR  231 (325)
T ss_dssp             CCEEEEEEEEEETTEEEECCCEEEETTT-------------CBCCCCCEEEEEEECTTCTTCEEEEEECCTTCC-CSSSC
T ss_pred             CcEEEEEEEEEcCCCCcccCcEEEeecc-------------ccCCCCCcceEEEEecCCCCEEEEEECCCCccC-CCcEe
Confidence            3467888999999997532 22222111             1235667777666654  368999999998642 24678


Q ss_pred             eEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCce
Q psy15127        444 IGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT  504 (633)
Q Consensus       444 ~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~  504 (633)
                      ..|.|+|+..+ ...|...........++|.+|.|++.|.|+|+|.|..|.|.+|.++...
T Consensus       232 ~~Y~V~yr~~~-~~~W~~~~~~~~~~~~~l~~L~p~t~Y~~rVrA~n~~g~G~~S~wS~~~  291 (325)
T 1n26_A          232 LRFELRYRAER-SKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEA  291 (325)
T ss_dssp             EEEEEEEEETT-CSCCEEEECGGGCSEEEESSCCTTCCEEEEEEEEETTTBSCCCCCCCCE
T ss_pred             EEEEEEEEeCC-CCCCEEEcccCCceEEEEeCCCCCCeEEEEEEEecCCCCCCCcCCCCcc
Confidence            99999999875 3567765444456789999999999999999999999999999877433

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.82  E-value=5.4e-20  Score=170.97  Aligned_cols=130  Identities=16%  Similarity=0.178  Sum_probs=95.5

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEE---cccc--eEEEccCCCCCCeEEEEEEE
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKI---LDDR--SLQIENVGPQDEGLYICDVE  143 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~---~~~~--~L~i~~v~~~d~G~Y~C~~~  143 (633)
                      ..+|.|...|. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+.......   ....  .|.|.+++.+|+|.|+|.+.
T Consensus         7 ~~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   84 (218)
T 1uct_A            7 FPMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYR   84 (218)
T ss_dssp             SCCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEE
Confidence            46788888887 57999999999999976 678999999988764321111   2235  89999999999999999999


Q ss_pred             eCCce--EEEEEEEEEEee--ccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEE
Q psy15127        144 NLVGS--ISLRASLTVHLL--RDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQF  202 (633)
Q Consensus       144 n~~g~--~s~~~~l~V~~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~  202 (633)
                      |..+.  .+..+.|.|...  +|.+...+ ...+.+|+.++|.|. ..+.|.+.+.|+|+|..
T Consensus        85 n~~~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~-~~~~~~~~~~W~k~g~~  145 (218)
T 1uct_A           85 IGHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCS-SAHIPFDRFSLAKEGEL  145 (218)
T ss_dssp             ETTTEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEE-CSSSCCSEEEEEETTCS
T ss_pred             cCCCceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEe-CCCCCCCEEEEEECCCc
Confidence            98654  345577777752  24444444 456788999999996 35556677888877653

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.82  E-value=6.2e-20  Score=182.81  Aligned_cols=228  Identities=14%  Similarity=0.144  Sum_probs=142.3

Q ss_pred             cccCCCCCCCCCCccccccceee--EEEEecccCCCCCceEE--------eeCceEEEcCCCC--CCeEEEEEEec----
Q psy15127          5 LDTNHAHPMSSPRAEIEPATRTN--RVSISGDPGFDSRRSRS--------IFGSVLGARGALS--DDQWKLIAKEA----   68 (633)
Q Consensus         5 ~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~L~i~~v~~--~G~Y~C~a~~v----   68 (633)
                      +.+.|......|.+.|+|+....  ...+.........|+..        ..+++|.|.+++.  +|.|+|.|.|.    
T Consensus        21 v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~  100 (327)
T 2wng_A           21 AILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYYCVKFRKGSPD  100 (327)
T ss_dssp             EEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEEEEEEEESSTTC
T ss_pred             EEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEEEEEeecCCCcc
Confidence            34455544444667888665321  11111000011234443        2346799999998  99999999871    


Q ss_pred             -------------CcC---CeeeeCCCceEEEcCCeEEEEEEEeccCCC--eEEEEeCCccCCCCCeEEc---------c
Q psy15127         69 -------------LIK---PFPISEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRDDGKMPTGRAKIL---------D  121 (633)
Q Consensus        69 -------------~~~---p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~~~~i~~~~~~~~---------~  121 (633)
                                   ..+   |.+ ..| ...+.+|+.+.|.|.+.+.|.+  .++|+|+|..+........         .
T Consensus       101 ~~~~~~~~~~l~V~~~p~~p~i-~~~-~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~  178 (327)
T 2wng_A          101 TEFKSGAGTELSVRAKPSAPVV-SGP-AARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSI  178 (327)
T ss_dssp             EEEEECCCEEEEEEBCCCCCEE-ECC-SSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEECSSCCSCEEE
T ss_pred             eeEeecCcEEEEEEecCCCcee-ecc-ccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccccccccccCCCceEE
Confidence                         111   222 222 3567899999999999988766  8999999998865432211         1


Q ss_pred             cceEEEccCCCCCCeEEEEEEEeCCce---EEEEEEE--EEEeeccccccCCCceEEecCCcEEEEEeCCCC-CCCC-eE
Q psy15127        122 DRSLQIENVGPQDEGLYICDVENLVGS---ISLRASL--TVHLLRDDFRAEPKDTRVASGETALLECGPPKG-QPEP-TL  194 (633)
Q Consensus       122 ~~~L~i~~v~~~d~G~Y~C~~~n~~g~---~s~~~~l--~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~p~~-~i  194 (633)
                      ...|.|.....+|+|.|+|.|.|..+.   ....+.+  .+..+ |.+...+..  +.+|+.+.|.|.+ .| .|++ .|
T Consensus       179 ~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~-P~i~~~~~~--~~~G~~v~l~C~~-~g~~p~~~~v  254 (327)
T 2wng_A          179 HSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVP-PTLEVTQQP--VRAENQVNVTCQV-RKFYPQRLQL  254 (327)
T ss_dssp             EEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBC-CEEEEEEEC--CSSTTCCEEEEEE-EEEBSSCEEE
T ss_pred             EEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCC-CEEEEecCC--cCCCCcEEEEEEE-ccccCCCcEE
Confidence            235788877778889999999998765   2334444  23344 555444333  6799999999995 56 4555 89


Q ss_pred             EEEECCEEeccCCCeeE-Eeccc------eeeeE----EEeeeEEEEeecCCCCC
Q psy15127        195 HWKKNGQFIDLESSKSL-DLSRR------TLGWL----RVRPLYWNVARPRANLN  238 (633)
Q Consensus       195 ~W~~~~~~~~~~~~~~~-~~~~~------~~~~~----~~~g~y~C~a~~~~~~~  238 (633)
                      .|+++|..+........ .....      .+.+.    ...|.|+|.|.|.++..
T Consensus       255 ~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~  309 (327)
T 2wng_A          255 TWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPA  309 (327)
T ss_dssp             EEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCC
T ss_pred             EEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCC
Confidence            99999998864321111 11111      12221    24689999999998755

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.82  E-value=1.1e-19  Score=181.43  Aligned_cols=192  Identities=13%  Similarity=0.135  Sum_probs=141.6

Q ss_pred             CceEEe----eCceEEEcCCCC--CCeEEEEEEe-------------cCcCCee--eeCCCceEEEcC---CeEEEEEE-
Q psy15127         40 RRSRSI----FGSVLGARGALS--DDQWKLIAKE-------------ALIKPFP--ISEPSDATVLSG---SVVEFVCR-   94 (633)
Q Consensus        40 ~~~~~~----~~~~L~i~~v~~--~G~Y~C~a~~-------------v~~~p~~--~~~~~~~~~~~G---~~~~L~C~-   94 (633)
                      .|+.+.    .+++|.|.+++.  +|.|+|.+.+             +..+|.+  ...+..+.+.+|   +.+.|.|. 
T Consensus        80 ~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~  159 (331)
T 3u83_A           80 ERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTS  159 (331)
T ss_dssp             TTEEESSCSSSBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEE
T ss_pred             CceEecccCCCCceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEe
Confidence            455543    357899999999  9999999543             4556665  335667788888   88999998 


Q ss_pred             EeccCCCeEEEEeCCccCCC------CCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEeecccccc-C
Q psy15127         95 VGGDPLPTILWRRDDGKMPT------GRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRA-E  167 (633)
Q Consensus        95 ~~~~p~p~i~W~~~~~~i~~------~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~-~  167 (633)
                      +.+.|.+.++|++++.....      ..........|.|.++..+|+|.|+|.|.|..+..+..+.|.|..+ |.+.. .
T Consensus       160 ~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~-P~~~~~~  238 (331)
T 3u83_A          160 ANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYE-PEVTIEG  238 (331)
T ss_dssp             EEEBSCCEEEEEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEE-EEEEEEC
T ss_pred             cCCcCCceEEEEcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecC-CeEEEec
Confidence            78899999999996432211      1111112246889999999999999999999999999999999888 55553 4


Q ss_pred             CCceEEecCCcEEEEEeCCCCCCCCe-EEEEECCEEeccCCCeeEEeccceeeeE-EE----eeeEEEEeecCCCC
Q psy15127        168 PKDTRVASGETALLECGPPKGQPEPT-LHWKKNGQFIDLESSKSLDLSRRTLGWL-RV----RPLYWNVARPRANL  237 (633)
Q Consensus       168 ~~~~~~~~g~~~~l~C~~~~~~p~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~g~y~C~a~~~~~~  237 (633)
                      +....+.+|+.+.|.|. ..+.|.+. +.|++++..+....    ......+.+. .+    .|.|+|.|.|..+.
T Consensus       239 ~~~~~~~~g~~~~l~C~-~~g~p~p~~i~W~~~~~~~~~~~----~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~  309 (331)
T 3u83_A          239 FDGNWYLQRMDVKLTCK-ADANPPATEYHWTTLNGSLPKGV----EAQNRTLFFKGPINYSLAGTYICEATNPIGT  309 (331)
T ss_dssp             CCSCCBTTCCCEEEEEE-EEEESCCCEEEEEETTBSCCTTE----EEETTEEEECSCCCGGGCEEEEEEEEETTEE
T ss_pred             CCCceEeCCCeEEEEEe-CcCCCCCCEEEEEECCCcccccc----eecCcEEEEeCCCccccCeEEEEEEEecccc
Confidence            44556889999999999 58889887 99999998765431    1122333333 22    48999999998774

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.82  E-value=2.3e-19  Score=165.93  Aligned_cols=172  Identities=19%  Similarity=0.269  Sum_probs=123.8

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCC--------------------CCCeEEcccceEEEccCCCCC
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP--------------------TGRAKILDDRSLQIENVGPQD  134 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~--------------------~~~~~~~~~~~L~i~~v~~~d  134 (633)
                      ...+....+.+|+.++|.|.+.+.+.+.+.|++++....                    .++.....++.|.|.+++.+|
T Consensus         3 ~i~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D   82 (208)
T 3r4d_A            3 TIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKD   82 (208)
T ss_dssp             EEEEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGG
T ss_pred             cccCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccC
Confidence            344556779999999999998888888999999754221                    234455556789999999999


Q ss_pred             CeEEEEEEEeCC-ceEEEEEEEEEEeecc--ccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeE
Q psy15127        135 EGLYICDVENLV-GSISLRASLTVHLLRD--DFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSL  211 (633)
Q Consensus       135 ~G~Y~C~~~n~~-g~~s~~~~l~V~~~~p--~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~  211 (633)
                      +|.|+|.+.+.. +..+..+.|.|..+++  .+...+..  +.+|+.+.|.|. ..+.| +.+.|++++..+....    
T Consensus        83 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~-~~~~p-p~i~W~~~g~~l~~~~----  154 (208)
T 3r4d_A           83 MGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCL-SNDIG-ANIQWLFNSQSLQLTE----  154 (208)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEE-CSCTT-CEEEEEETTEECCCCS----
T ss_pred             CeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEE-CCCCC-CceEEEECCEeCCCCC----
Confidence            999999999985 5577888888876532  22222222  777888888888 45544 6777777766553211    


Q ss_pred             EeccceeeeEEEeeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccce
Q psy15127        212 DLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGH  291 (633)
Q Consensus       212 ~~~~~~~~~~~~~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~  291 (633)
                                                                                                     +
T Consensus       155 -------------------------------------------------------------------------------~  155 (208)
T 3r4d_A          155 -------------------------------------------------------------------------------R  155 (208)
T ss_dssp             -------------------------------------------------------------------------------S
T ss_pred             -------------------------------------------------------------------------------C
Confidence                                                                                           1


Q ss_pred             EEE-ccCceEEEcCCCCCCCeEEEEEEEeCCceeE-EEEEEEEE
Q psy15127        292 LHV-TQEGTLRIQGVQKEDAGFFVCSALSVAGSTT-VRAFLQVR  333 (633)
Q Consensus       292 ~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~  333 (633)
                      ... ..++.|.|.++..+|.|.|+|.|.|..|... ..+.|.|.
T Consensus       156 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~  199 (208)
T 3r4d_A          156 MTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII  199 (208)
T ss_dssp             EEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC
T ss_pred             eEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEE
Confidence            111 1336899999999999999999999999864 34455544

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.82  E-value=6.9e-20  Score=164.08  Aligned_cols=81  Identities=20%  Similarity=0.263  Sum_probs=64.3

Q ss_pred             ceEEEcCCeEEEEEEEec--cCCCeEEEEeCCccC-----------CCCCeEEcccceEEEccCCCCCCeEEEEEEEeCC
Q psy15127         80 DATVLSGSVVEFVCRVGG--DPLPTILWRRDDGKM-----------PTGRAKILDDRSLQIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus        80 ~~~~~~G~~~~L~C~~~~--~p~p~i~W~~~~~~i-----------~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      .+.+.+|++++|.|...+  .+.+.|.|+|++..+           ..++..+..++.|.|.+++.+|+|.|+|.|.|..
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~   84 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTN   84 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETT
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCC
Confidence            467899999999995433  556789999998643           2345566667789999999999999999999998


Q ss_pred             ceE--EEEEEEEEEee
Q psy15127        147 GSI--SLRASLTVHLL  160 (633)
Q Consensus       147 g~~--s~~~~l~V~~~  160 (633)
                      |..  +..+.|.|..+
T Consensus        85 g~~~~~~~~~l~V~~~  100 (176)
T 1hng_A           85 GTRILNKALDLRILEM  100 (176)
T ss_dssp             CCEEEEEEEEEEEECC
T ss_pred             CCEEEEEEEEEEEeCC
Confidence            886  66777777764

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.82  E-value=5e-19  Score=160.15  Aligned_cols=165  Identities=19%  Similarity=0.302  Sum_probs=123.8

Q ss_pred             eEEEcCCeEEEEEEEeccCCC--eEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy15127         81 ATVLSGSVVEFVCRVGGDPLP--TILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH  158 (633)
Q Consensus        81 ~~~~~G~~~~L~C~~~~~p~p--~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~  158 (633)
                      ..+.+|+.++|.|.+.+.|.|  .+.|+|++..+...... .....|.|.  +.+|+|.|+|.+.|..   +..+.|.|.
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~-~~~~~l~i~--~~~d~G~Y~C~~~n~~---~~~~~l~V~   81 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-GQKTEFKVD--SDDQWGEYSCVFLPEP---MGTANIQLH   81 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-CSEEEEEEC--GGGCCEEEEEEEESTT---SCEEEEEEC
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc-CCcEEEEEe--chhhCeEEEEEEECCc---CcEEEEEEe
Confidence            457899999999999887777  89999999887654321 112356665  6899999999999832   356788888


Q ss_pred             eeccccccCCCceEEecCCcEEEEEeCCCCCC-CCeEEEEE---CCEEeccCCCeeEEeccceeeeEEEeeeEEEEeecC
Q psy15127        159 LLRDDFRAEPKDTRVASGETALLECGPPKGQP-EPTLHWKK---NGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPR  234 (633)
Q Consensus       159 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~i~W~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~a~~~  234 (633)
                      .+ |.+...+....+.+|+.+.|.|. ..+.| .+.+.|++   ++..+.....                          
T Consensus        82 ~~-P~~~~~~~~~~~~~g~~~~l~C~-~~g~p~~~~i~W~~~~~~~~~~~~~~~--------------------------  133 (184)
T 3b5h_A           82 GP-PRVKAVKSSEHINEGETAMLVCK-SESVPPVTDWAWYKITDSEDKALMNGS--------------------------  133 (184)
T ss_dssp             CS-CCCEESCSEEEECTTSCEEEEEE-CCCSSCCCEEEEEECCSSSCEECCTTG--------------------------
T ss_pred             cC-CceeecCCCcEEcCCCcEEEEEE-ECCCCCCCeEEEEEcCCCCCEEeecCC--------------------------
Confidence            77 78777777778899999999999 57777 78999998   3332211000                          


Q ss_pred             CCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEE---ccCceEEEcCCC-CCCC
Q psy15127        235 ANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV---TQEGTLRIQGVQ-KEDA  310 (633)
Q Consensus       235 ~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~---~~~~~l~i~~~~-~~d~  310 (633)
                                                                            ..++.+   .....|.|.++. .+|.
T Consensus       134 ------------------------------------------------------~~~~~~~~~~~~~~L~i~~v~~~~d~  159 (184)
T 3b5h_A          134 ------------------------------------------------------ESRFFVSSSQGRSELHIENLNMEADP  159 (184)
T ss_dssp             ------------------------------------------------------GGTEEEEEETTEEEEEECSCCTTTSS
T ss_pred             ------------------------------------------------------CCEEEEEecCCeeEEEEeeccccccC
Confidence                                                                  001111   122379999999 8999


Q ss_pred             eEEEEEEEeCCceeEEEEEEEEE
Q psy15127        311 GFFVCSALSVAGSTTVRAFLQVR  333 (633)
Q Consensus       311 G~Y~C~a~n~~g~~~~~~~l~v~  333 (633)
                      |.|+|.|.|..|.....+.|.|.
T Consensus       160 G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          160 GQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEC
T ss_pred             ceEEEEEEeCCCcceEEEEEEEe
Confidence            99999999999999998888875

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.82  E-value=2.1e-18  Score=160.41  Aligned_cols=175  Identities=21%  Similarity=0.361  Sum_probs=125.2

Q ss_pred             EEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc---cCceEEEcCCCCCCCeEEEEEEEeCCceeEE
Q psy15127        250 LIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSALSVAGSTTV  326 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  326 (633)
                      +.+..|+.+.|.|.+.|.|.+.+.|+++|..+...   ...++.+.   ..+.|.|.++..+|.|.|+|.|.|..|..+.
T Consensus        28 ~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  104 (215)
T 3mtr_A           28 VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSS---NYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESL  104 (215)
T ss_dssp             EEECTTCCEEEEEEEEEESCCEEEEEETTEESSCS---SSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEEEE
T ss_pred             EEEECCCCEEEEEEEeecCCCEEEEEECCeECCCC---CCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCceEE
Confidence            66778999999999999999999999999876421   11222222   2446777777777777777777777766555


Q ss_pred             EEEEEEEecccCCCceEEeCCCccccCCCCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCC
Q psy15127        327 RAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDS  406 (633)
Q Consensus       327 ~~~l~v~~~~~~p~p~~~~~~~~~~~g~p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~  406 (633)
                      .+.|.|.                                                           ..|           
T Consensus       105 ~~~l~v~-----------------------------------------------------------~~P-----------  114 (215)
T 3mtr_A          105 EFILVQA-----------------------------------------------------------DTP-----------  114 (215)
T ss_dssp             EEEEEEC-----------------------------------------------------------CCC-----------
T ss_pred             EEEEEEC-----------------------------------------------------------CCC-----------
Confidence            5444443                                                           222           


Q ss_pred             CCCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeee----eceEEEecCCCCCeE
Q psy15127        407 GLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT----STSITVSDLKPDTSY  482 (633)
Q Consensus       407 ~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~----~~~~~i~~L~p~~~Y  482 (633)
                          .+|..+.. ......+.|+|.++...+  +.++..|.|+|+..+. ..|........    ...++|.+|.+++.|
T Consensus       115 ----~~p~~~~~-~~~~~~~~l~w~~p~~~~--~~pi~~y~v~~~~~~~-~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y  186 (215)
T 3mtr_A          115 ----SSPSIDQV-EPYSSTAQVQFDEPEATG--GVPILKYKAEWRAVGE-EVWHSKWYDAKEASMEGIVTIVGLKPETTY  186 (215)
T ss_dssp             ----CCCEEEEE-EEETTEEEEEEECCSCCC--SSCEEEEEEEEEETTC-CCCEEEEEEHHHHHHHTEEEEECCCTTCEE
T ss_pred             ----CCCcceEE-EEecceEEEEEecCCccC--CCceEEEEEEEEECCC-CcccccccccccccccccEEECCCCCCCEE
Confidence                22333333 345678999999877553  6789999999998764 46665433322    278999999999999


Q ss_pred             EEEEEEEeccccCCCCCCCCceee
Q psy15127        483 MFIVRAENSHGLGIPSPVSPITRT  506 (633)
Q Consensus       483 ~~~v~a~n~~G~g~~s~~~~~~~t  506 (633)
                      .|+|.|.|.+|.|.+|... .++|
T Consensus       187 ~~~~~A~N~~G~s~~S~~~-~v~T  209 (215)
T 3mtr_A          187 AVRLAALNGKGLGEISAAS-EFKT  209 (215)
T ss_dssp             EEEEEEEESSCBCCCCCCE-EEEC
T ss_pred             EEEEEEEeCCcccCcccce-eeEe
Confidence            9999999999999998766 3555

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1

Probab=99.82  E-value=4.1e-19  Score=160.96  Aligned_cols=171  Identities=16%  Similarity=0.177  Sum_probs=130.4

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRA  488 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a  488 (633)
                      .|++|..+.+...+.+++.|+|.++.      +.+.+|.|+|+..+  ..+...........++|.+|.|++.|.|+|+|
T Consensus         6 ~p~~P~~l~~~~~~~~sv~l~W~~p~------~~i~~Y~v~~~~~~--~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a   77 (186)
T 1qr4_A            6 DLDNPKDLEVSDPTETTLSLRWRRPV------AKFDRYRLTYVSPS--GKKNEMEIPVDSTSFILRGLDAGTEYTISLVA   77 (186)
T ss_dssp             --CCCEEEEEESCCSSEEEEEEECCS------SCCSEEEEEEECTT--CCEEEEEECTTCSEEEEESCCSSCEEEEEEEE
T ss_pred             CCcCCCceEEEecCCCEEEEEEeCCC------CCccEEEEEEEeCC--CCeeEEECCCCCCEEEECCCCCCCEEEEEEEE
Confidence            36678888888889999999999985      36889999998543  34443334445688999999999999999999


Q ss_pred             EeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcce
Q psy15127        489 ENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGT  568 (633)
Q Consensus       489 ~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y  568 (633)
                      .|..|.+.+...  .+.|   .|.+|.++                ++..++.+++.|+|++|           .+.+.+|
T Consensus        78 ~~~~~~s~~~~~--~~~t---~p~~P~~l----------------~~~~~~~~sv~l~W~~p-----------~~~i~~Y  125 (186)
T 1qr4_A           78 EKGRHKSKPTTI--KGST---VVGSPKGI----------------SFSDITENSATVSWTPP-----------RSRVDSY  125 (186)
T ss_dssp             ESSSCBCCCEEE--EEEC---CCCCCSCE----------------EEESCCSSCEEEEECCC-----------SSCCSEE
T ss_pred             EcCCccCCCEEE--EEEC---CCCCCCcc----------------EEEEeCCCEEEEEEECC-----------CCcccEE
Confidence            998777654322  2333   24445455                77888999999999943           2579999


Q ss_pred             eEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccC
Q psy15127        569 KVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       569 ~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s  632 (633)
                       .|.|+..+...       |.     .+...+..++++|.+|+|++.|.|+|+|.|..|+|+|.
T Consensus       126 -~v~~~~~~~~~-------~~-----~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~  176 (186)
T 1qr4_A          126 -RVSYVPITGGT-------PN-----VVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPI  176 (186)
T ss_dssp             -EEEEEETTCCC-------CE-----EEEEETTCCEEEECSCCSSCEEEEEEEEEETTEECCCE
T ss_pred             -EEEEEeCCCCC-------ce-----EEEcCCCcCEEEEcCCCCCCEEEEEEEEEcCCCcCcCE
Confidence             99999876543       11     22344568999999999999999999999999999874

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}

Probab=99.82  E-value=4.9e-19  Score=193.30  Aligned_cols=219  Identities=20%  Similarity=0.214  Sum_probs=152.7

Q ss_pred             cccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCC-CCcEEEEeeCCeEEEEeCCCCCCCCCCcce
Q psy15127        365 RETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPP-AAPVILNTTRGSVTLGWGEPEPRGGGVAPV  443 (633)
Q Consensus       365 ~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p-~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i  443 (633)
                      .....|.+.| +.|..|..-......+..               .|.+| ..+.+...+.+++.|+|.++...+  +.++
T Consensus       131 d~~c~g~~~C-c~n~cG~~C~~P~~~~~~---------------~P~~P~~~l~v~~~~~~sv~l~W~pp~~~~--~~~i  192 (680)
T 1zlg_A          131 DNECSGVKKC-CSNGCGHTCQVPKTLYKG---------------VPLKPRKELRFTELQSGQLEVKWSSKFNIS--IEPV  192 (680)
T ss_pred             cccCCCcccc-ccccccccccccceeeec---------------ccccccccceEEeccCceEEEEEeCCCCCC--CCCE
Confidence            3456778888 566677643222222222               24557 688888899999999999986432  4567


Q ss_pred             eEEEEEEEEecC-------CCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCceeecC--CCCCCC
Q psy15127        444 IGYTVEYFSSDL-------QTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLG--LNSLVP  514 (633)
Q Consensus       444 ~~Y~v~~~~~~~-------~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~--~~p~~~  514 (633)
                      . |.|+|+....       ...|..... .....++|.+|.|++.|.|+|.|.|..|.+.++.....++|..  .+|.+|
T Consensus       193 ~-Y~V~~r~~~g~~~~~~~~~~w~~v~~-~~~~~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~pp~~P  270 (680)
T 1zlg_A          193 I-YVVQRRWNYGIHPSEDDATHWQTVAQ-TTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAP  270 (680)
T ss_pred             E-EEEEEEECCCCCcCccccCceEEEEe-cCCCeEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccceEcCCCCCCCCCC
Confidence            7 9999997632       146765433 3567899999999999999999999999443333333456644  355566


Q ss_pred             cchHHHHHHHhCCceEEeeeeeec--ccc---eEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeee
Q psy15127        515 QHLLDEARARLGTKVVNLRELIPT--AST---AVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE  589 (633)
Q Consensus       515 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~---si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~  589 (633)
                      .++                ++..+  +.+   +|.|+|++|        ...++.|.+| .|+|+.............|.
T Consensus       271 ~~l----------------~~~~~~~~~~g~~sv~l~W~pP--------~~~~g~i~~Y-~V~~~~~~~~~~~~~~~~~~  325 (680)
T 1zlg_A          271 ANL----------------RLANSTVNSDGSVTVTIVWDLP--------EEPDIPVHHY-KVFWSWMVSSKSLVPTKKKR  325 (680)
T ss_pred             Cce----------------EeeeeeecCCCceEEEEEecCC--------CCCCCceeEE-EEEEEecccccccCCccceE
Confidence            555                66666  778   999999965        3467999999 99998321111001112354


Q ss_pred             ccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        590 KYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       590 ~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      .     ....+..++++|.+|+|++.|.|+|.|.|..|.|++|+
T Consensus       326 ~-----~~v~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~  364 (680)
T 1zlg_A          326 R-----KTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKS  364 (680)
T ss_pred             E-----EEEcCCeeEEEeCCCCCCCEEEEEEEEEECCCcCCCCC
Confidence            2     22345678999999999999999999999999998874

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A

Probab=99.82  E-value=1.8e-18  Score=168.87  Aligned_cols=210  Identities=16%  Similarity=0.220  Sum_probs=157.9

Q ss_pred             CceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCC
Q psy15127        357 LRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPR  436 (633)
Q Consensus       357 ~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~  436 (633)
                      ..+.+.+|.....|.|++.|.|..|...... ..+...+.             +.+|..+.+.....+++.|+|.++.  
T Consensus        74 ~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~-~~~~t~~~-------------~~~P~~l~~~~~~~~sv~l~W~~p~--  137 (290)
T 3r8q_A           74 SSVVVSGLMVATKYEVSVYALKDTLTSRPAQ-GVVTTLEN-------------VSPPRRARVTDATETTITISWRTKT--  137 (290)
T ss_dssp             CEEEECSCCSSCEEEEEEEEEETTEECCCEE-EEEECCCC-------------CCCCEEEEEEEECSSCEEEEEECCS--
T ss_pred             cEEEeCCCCCCCEEEEEEEEEeCCCCCCCcc-eeEecCCC-------------CCCCceeEEEEcCCCeEEEEEeCCC--
Confidence            3557789999999999999999998764432 22222211             2457777788888999999999974  


Q ss_pred             CCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCceeecCCCCCCCcc
Q psy15127        437 GGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQH  516 (633)
Q Consensus       437 ~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~~p~~~~~  516 (633)
                          +.+.+|.|+|+..+....+. .........++|.+|.|++.|.|+|+|.|..|.|.+...  ...|   .|.+|.+
T Consensus       138 ----~~~~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~~~--~~~t---~p~~P~~  207 (290)
T 3r8q_A          138 ----ETITGFQVDAVPANGQTPIQ-RTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVI--DAST---AIDAPSN  207 (290)
T ss_dssp             ----CCCCEEEEEEEESSSCCCEE-EEECTTCSEEEECSCCTTCEEEEEEEEEETTEECCCEEE--EEEC---CCCCCEE
T ss_pred             ----CcccEEEEEEEECCCCcceE-EecCCCccEEEECCCCCCCEEEEEEEEEeCCcccCCEEE--EecC---CCCCCCc
Confidence                47899999999876443333 334445678999999999999999999999999875422  1223   3445555


Q ss_pred             hHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEe
Q psy15127        517 LLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATV  596 (633)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~  596 (633)
                      +                .+..++.+++.|+|++|           .+.+.+| .|+|+..+...       |...    .
T Consensus       208 l----------------~~~~~~~~sv~l~W~~p-----------~~~~~~Y-~v~~~~~~~~~-------~~~~----~  248 (290)
T 3r8q_A          208 L----------------RFLATTPNSLLVSWQPP-----------RARITGY-IIKYEKPGSPP-------REVV----P  248 (290)
T ss_dssp             E----------------EEEEEETTEEEEEEECC-----------SSCCCEE-EEEEECTTSCC-------EECS----S
T ss_pred             c----------------EEEeeCCCEEEEEEeCC-----------CCcccEE-EEEEEeCCCCc-------ceeE----e
Confidence            5                77788999999999954           1589999 99999876543       3211    1


Q ss_pred             ecCCccceEEeeccccceeEEEEEecccccccccc
Q psy15127        597 MNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGAR  631 (633)
Q Consensus       597 ~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~  631 (633)
                      ...+..++++|.+|+|++.|.|+|+|.|..|.|+|
T Consensus       249 ~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p  283 (290)
T 3r8q_A          249 RPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEP  283 (290)
T ss_dssp             CCCTTCCEEEECSCCTTCEEEEEEEEEETTEECCC
T ss_pred             ccCCCccEEEECCCCCCCEEEEEEEEEeCCCcCCc
Confidence            13356889999999999999999999999999987

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.81  E-value=2.5e-19  Score=170.87  Aligned_cols=131  Identities=21%  Similarity=0.359  Sum_probs=98.9

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEec---cCCCeEEEEeCCccCC-------------------------------CCCeEE
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGG---DPLPTILWRRDDGKMP-------------------------------TGRAKI  119 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~---~p~p~i~W~~~~~~i~-------------------------------~~~~~~  119 (633)
                      +...+..+.+.+|++++|.|.+.+   .|.+.|.|+|++....                               .++..+
T Consensus         5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   84 (250)
T 2fbo_J            5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV   84 (250)
T ss_dssp             EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred             EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence            445566788999999999999987   7888999999875431                               122222


Q ss_pred             cc--cceEEEccCCCCCCeEEEEEEEeCCce-----EEEEEEEEEEee--cccccc-CCCceEEecCCcEEEEEeCCCCC
Q psy15127        120 LD--DRSLQIENVGPQDEGLYICDVENLVGS-----ISLRASLTVHLL--RDDFRA-EPKDTRVASGETALLECGPPKGQ  189 (633)
Q Consensus       120 ~~--~~~L~i~~v~~~d~G~Y~C~~~n~~g~-----~s~~~~l~V~~~--~p~~~~-~~~~~~~~~g~~~~l~C~~~~~~  189 (633)
                      ..  +..|.|.+++.+|+|.|+|.+.+..+.     .+..+.|.|..+  ++.+.. .+....+.+|+.+.|.|. ..+.
T Consensus        85 ~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~-~~g~  163 (250)
T 2fbo_J           85 ANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCP-CTDC  163 (250)
T ss_dssp             SCTTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCC-EESC
T ss_pred             ccCCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEE-ecCC
Confidence            22  358999999999999999999987664     366788888764  233333 344566778999999999 5788


Q ss_pred             CCCeEEEEECCEEecc
Q psy15127        190 PEPTLHWKKNGQFIDL  205 (633)
Q Consensus       190 p~~~i~W~~~~~~~~~  205 (633)
                      |.+.|.|++++..+..
T Consensus       164 p~p~v~W~k~~~~~~~  179 (250)
T 2fbo_J          164 ANANVTWYTGPTFFEN  179 (250)
T ss_dssp             TTCEEEEEEEEECSSC
T ss_pred             CCCeeEEEeCCCcccc
Confidence            8889999999876643

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}

Probab=99.81  E-value=1.6e-18  Score=189.18  Aligned_cols=231  Identities=16%  Similarity=0.146  Sum_probs=158.1

Q ss_pred             ceEEecccccCCEEEEEEEEcCCcce---eEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEe--eCC---eEEEE
Q psy15127        358 RRIACDLRETDSGLYTCTASSESGET---SWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNT--TRG---SVTLG  429 (633)
Q Consensus       358 ~~~i~~~~~~d~g~y~c~a~n~~g~~---~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~--~~~---~i~l~  429 (633)
                      .+.+.+|.....|.|++.|.|..|..   +....+.....+            ..|++|..+.+...  +.+   ++.|+
T Consensus       224 ~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~------------~pp~~P~~l~~~~~~~~~~g~~sv~l~  291 (680)
T 1zlg_A          224 RVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDP------------SAPPAPANLRLANSTVNSDGSVTVTIV  291 (680)
T ss_pred             eEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccceEcCCCC------------CCCCCCCceEeeeeeecCCCceEEEEE
Confidence            45788899999999999999998832   222222221111            23677888888777  777   99999


Q ss_pred             eCCCCCCCCCCcceeEEEEEEEEe-c-----CCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCC--C
Q psy15127        430 WGEPEPRGGGVAPVIGYTVEYFSS-D-----LQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPV--S  501 (633)
Q Consensus       430 W~~~~~~~~~~~~i~~Y~v~~~~~-~-----~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~--~  501 (633)
                      |.+|...   ++++.+|.|+|+.. +     ....|.........+.++|.+|.|++.|.|+|+|.|..|.|+++..  .
T Consensus       292 W~pP~~~---~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~  368 (680)
T 1zlg_A          292 WDLPEEP---DIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVS  368 (680)
T ss_pred             ecCCCCC---CCceeEEEEEEEecccccccCCccceEEEEEcCCeeEEEeCCCCCCCEEEEEEEEEECCCcCCCCCCcee
Confidence            9988743   57999999999832 1     1224655444445578999999999999999999999999988766  1


Q ss_pred             CceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEE-----------EEEEecCCCcccccchhhhhcceeE
Q psy15127        502 PITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRI-----------TWEVSWGSVPQHLLDEARARLGTKV  570 (633)
Q Consensus       502 ~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v-----------~W~~p~~~~p~~~~~~~~~i~~y~~  570 (633)
                      ..+.|...+|. |.++                .+..++.+++.|           .|.+|        . ..+.+.+| .
T Consensus       369 v~~~T~~~~P~-p~~l----------------~~~~~s~tsi~lp~~~~~~~~~l~W~~P--------~-~~~~~~~y-~  421 (680)
T 1zlg_A          369 LHFTSTHATNN-KEQL----------------VKTRKGGIQTQLPFQRRRPTRPLEVGAP--------F-YQDGQLQV-K  421 (680)
T ss_pred             EEEECCCCCCC-cccc----------------ccccccCccccccccccCCCccccccCC--------c-ccCCcceE-E
Confidence            25677777666 4444                566667777766           99954        1 22346688 8


Q ss_pred             EEEEEcCCCcccceeeeeeccc--------eeEeecCCccceEEeeccccceeEEEEEeccccccccc
Q psy15127        571 VNLRELIPTASTAVRITWEKYN--------MATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGA  630 (633)
Q Consensus       571 i~~~~~~~~~~~~~~~~w~~~~--------~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~  630 (633)
                      |.|.......-..=...|....        ..........++++|.+|+|++.|.|+|+|.|..|.|+
T Consensus       422 v~w~~~~~~~v~~Y~V~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~s~  489 (680)
T 1zlg_A          422 VYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSK  489 (680)
T ss_pred             EEEeCCCCCccceEEEEEeeeecccCCCCcceeeeeeccCceEEecCCCCCCeEEEEEEEecCCCCCC
Confidence            8887665432000011221110        01111234578899999999999999999999999553

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.81  E-value=3.5e-19  Score=165.32  Aligned_cols=185  Identities=17%  Similarity=0.197  Sum_probs=121.9

Q ss_pred             CCCceEEEcC--CeEEEEEEEeccCCCeEEEEeC---CccCCCCC-eEEcccceEEEccCCCCCCeEEEEEEEeCCceE-
Q psy15127         77 EPSDATVLSG--SVVEFVCRVGGDPLPTILWRRD---DGKMPTGR-AKILDDRSLQIENVGPQDEGLYICDVENLVGSI-  149 (633)
Q Consensus        77 ~~~~~~~~~G--~~~~L~C~~~~~p~p~i~W~~~---~~~i~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~-  149 (633)
                      .|..+.+.+|  +.++|.|.+.+ |.+.++|+++   +..+..+. ........|.|.+++.+|+|.|+|.|.|..+.. 
T Consensus        13 ~p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~   91 (213)
T 2x1w_L           13 QHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQ   91 (213)
T ss_dssp             -CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEE
T ss_pred             CceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeEE
Confidence            4578889999  99999999976 7789999884   66665543 333456789999999999999999998854432 


Q ss_pred             EEEEEEEEEee-ccccccCC-CceEEecCCcEEEEEeCCCCCC--CCeEEEEECCEEeccCCCeeEEeccceeeeEEEee
Q psy15127        150 SLRASLTVHLL-RDDFRAEP-KDTRVASGETALLECGPPKGQP--EPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP  225 (633)
Q Consensus       150 s~~~~l~V~~~-~p~~~~~~-~~~~~~~g~~~~l~C~~~~~~p--~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  225 (633)
                      +..+.|.|... +|.+...+ ....+.+|++++|.|. ..|.|  .+.+.|++++..+...   ....            
T Consensus        92 s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~-~~g~p~~~~~i~W~~~g~~~~~~---~~~~------------  155 (213)
T 2x1w_L           92 SIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCT-ARTELNVGIDFNWEYPSSKHQHK---KLVN------------  155 (213)
T ss_dssp             CCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEE-EEECTTBCCEEEEECSCSSCCSE---EEEE------------
T ss_pred             EEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEE-EECCCCCceEEEEEecCCccceE---EEec------------
Confidence            33366666431 13344333 3347888888888888 45433  3478888776533210   0000            


Q ss_pred             eEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCC
Q psy15127        226 LYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGV  305 (633)
Q Consensus       226 ~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~  305 (633)
                                                                     . ..+.        ...... ....+.|.|.++
T Consensus       156 -----------------------------------------------~-~~~~--------~~~~~~-~~~~~~L~I~~v  178 (213)
T 2x1w_L          156 -----------------------------------------------R-DLKT--------QSGSEM-KKFLSTLTIDGV  178 (213)
T ss_dssp             -----------------------------------------------E-EECC--------CSSCSC-EEEEEEEEESSC
T ss_pred             -----------------------------------------------c-cccc--------ccCccc-eeeeEEEEECCC
Confidence                                                           0 0000        000000 011247999999


Q ss_pred             CCCCCeEEEEEEEeCCceeEEEEEEEEEec
Q psy15127        306 QKEDAGFFVCSALSVAGSTTVRAFLQVREF  335 (633)
Q Consensus       306 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  335 (633)
                      +.+|+|.|+|.|.|..|..+..+.|.|.+.
T Consensus       179 ~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~  208 (213)
T 2x1w_L          179 TRSDQGLYTCAASSGLMTKKNSTFVRVHED  208 (213)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEEEEEC-
T ss_pred             CcccCEEEEEEEecCCCcEEEEEEEEEecc
Confidence            999999999999999999999999999863

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.81  E-value=8.4e-20  Score=165.14  Aligned_cols=124  Identities=21%  Similarity=0.191  Sum_probs=93.0

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      ..+|.+...|.. .+.+|++++|.|.+.+ +.+.+.|+|++..      ....++.|.|.+++.+|+|.|+|.+.|..|.
T Consensus         6 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   77 (184)
T 2gi7_A            6 LPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSS------RYQDQAVLFIPAMKRSLAGRYRCSYQNGSLW   77 (184)
T ss_dssp             BCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTC------CEESSSEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcc------ccCcccEEEECcCChhhCceEEEEEEcCCCc
Confidence            457888888775 7999999999999987 7789999999876      2234678999999999999999999998764


Q ss_pred             --EEEEEEEEEEee--ccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEe
Q psy15127        149 --ISLRASLTVHLL--RDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI  203 (633)
Q Consensus       149 --~s~~~~l~V~~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~  203 (633)
                        .+..+.|.|...  +|.+...+ ...+.+|+.+.|.|. ..+.| +.+.|+|+|..+
T Consensus        78 ~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~l~C~-~~~~~-~~~~w~k~g~~~  133 (184)
T 2gi7_A           78 SLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQ-TRYGF-DQFALYKEGDPA  133 (184)
T ss_dssp             BCCCCCEEEEEESSSCCCEEEEEC-CCSSCCTTCEEEEEE-CSSCC-CEEEEEECCCCT
T ss_pred             cCCCCCEEEEecCcCCCCEEEeCC-CceecCCCcEEEEEE-cCCCC-cEEEEEECCCcC
Confidence              355677777543  24444444 345667888888888 34433 577787776543

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.81  E-value=4e-19  Score=160.79  Aligned_cols=157  Identities=21%  Similarity=0.330  Sum_probs=115.3

Q ss_pred             ceEEEcCCeEEEEEEEeccCCCeEEEEeCCccC--C-------------CCCeEEc----c--cceEEEccCCCCCCeEE
Q psy15127         80 DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM--P-------------TGRAKIL----D--DRSLQIENVGPQDEGLY  138 (633)
Q Consensus        80 ~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i--~-------------~~~~~~~----~--~~~L~i~~v~~~d~G~Y  138 (633)
                      .+.+.+|++++|.|.+.+.|.+.+.|+|++..+  .             .++....    .  ...|.|.+++.+|+|.|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            467899999999999998888999999998631  1             1122222    1  34599999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEecccee
Q psy15127        139 ICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL  218 (633)
Q Consensus       139 ~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~  218 (633)
                      +|.+.+..+    .+.|.|... +    .+....+.+|+.+.|.|. ..+.|.+.+.|++++.                 
T Consensus        84 ~C~~~~~~~----~~~l~V~~~-~----~~~~~~v~~g~~~~l~C~-~~~~p~~~v~W~~~~~-----------------  136 (184)
T 2ny1_B           84 ICEVEDQKE----EVQLLVFGL-T----ANSDTHLLQGQSLTLTLE-SPPGSSPSVQCRSPRG-----------------  136 (184)
T ss_dssp             EEEETTEEE----EEEEEEEEE-E----ESSCSEEETTCCEEEEEE-CCTTCCCEEEEECTTS-----------------
T ss_pred             EEEEEcCCC----cEEEEEEEe-c----CCCCceeecCCCEEEEEE-cCCCCCCEEEEEeCCC-----------------
Confidence            999987644    455666543 1    123346677888888887 4445666666665532                 


Q ss_pred             eeEEEeeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCc
Q psy15127        219 GWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG  298 (633)
Q Consensus       219 ~~~~~~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~  298 (633)
                                                                                   .+            ....+
T Consensus       137 -------------------------------------------------------------~~------------~~~~~  143 (184)
T 2ny1_B          137 -------------------------------------------------------------KN------------IQGGK  143 (184)
T ss_dssp             -------------------------------------------------------------CE------------EEESS
T ss_pred             -------------------------------------------------------------cc------------ccCce
Confidence                                                                         11            11345


Q ss_pred             eEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEecc
Q psy15127        299 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFC  336 (633)
Q Consensus       299 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  336 (633)
                      .|.|.++..+|+|.|+|.|.|..|..+..+.|.|...+
T Consensus       144 ~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p  181 (184)
T 2ny1_B          144 TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ  181 (184)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             EEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecC
Confidence            89999999999999999999999999999999998643

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B

Probab=99.81  E-value=2.7e-18  Score=174.43  Aligned_cols=212  Identities=15%  Similarity=0.174  Sum_probs=161.6

Q ss_pred             CceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCC
Q psy15127        357 LRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPR  436 (633)
Q Consensus       357 ~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~  436 (633)
                      ..+.+.+|.....|.|++.|.|..|...... +...  +.            .| +|..+.+...+.+++.|+|.++.  
T Consensus        59 ~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~-~~~~--~~------------~p-~p~~l~~~~~~~~si~l~W~~~~--  120 (375)
T 3t1w_A           59 SSCTFDNLSPGLEYNVSVYTVKDDKESVPIS-DTII--PE------------VP-QLTDLSFVDITDSSIGLRWTPLN--  120 (375)
T ss_dssp             CEEEECCCCTTCCEEEEEEEEETTEECCCEE-EEEC--CC------------CC-CCSCCEEECCCSSEEEEECCCCC--
T ss_pred             cEEEEcCCcCCCEEEEEEEEEcCCCCCCcEE-eeEc--CC------------CC-CCceEEEEecCCCeEEEEEECCC--
Confidence            4457788999999999999999887543322 2111  11            12 37778888889999999999986  


Q ss_pred             CCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCceeecCCCCCCCcc
Q psy15127        437 GGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQH  516 (633)
Q Consensus       437 ~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~~p~~~~~  516 (633)
                         ++.+.+|.|+|+..+....+...........++|.+|.|++.|.|+|+|.|..|.|.++...  ..|   .|.+|..
T Consensus       121 ---~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~~~--~~t---~~~~p~~  192 (375)
T 3t1w_A          121 ---SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLT--QQT---AVPPPTD  192 (375)
T ss_dssp             ---CTTEEEEEEEEEESSSCCSCEEEEECTTCCEEEEECCCTTCEEEEEEEEEETTEECCCEEEE--EEC---CCCCCEE
T ss_pred             ---CCCceEEEEEEEECCCCCceeEEEcCCCcceEEEeCCCCCCEEEEEEEEEeCCcccCCeeee--eec---CCCCCce
Confidence               46899999999987655445444444567889999999999999999999999999876532  333   3334444


Q ss_pred             hHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEe
Q psy15127        517 LLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATV  596 (633)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~  596 (633)
                      +                .+..++.+++.|+|++|          .++.+.+| .|+|+..+...      .|.     .+
T Consensus       193 l----------------~~~~~~~~si~l~W~~p----------~~~~i~~Y-~v~~~~~~~~~------~~~-----~~  234 (375)
T 3t1w_A          193 L----------------RFTNIGPDTMRVTWAPP----------PSIDLTNF-LVRYSPVKNEE------DVA-----EL  234 (375)
T ss_dssp             E----------------EEESCCSSCEEEEEECC----------SSCCCCEE-EEEEEEGGGTT------CCE-----EE
T ss_pred             e----------------EEEecccCEEEEEEcCC----------CCCCccEE-EEEEEeCCCCC------CcE-----EE
Confidence            4                67788899999999943          24779999 99999876433      132     33


Q ss_pred             ecCCccceEEeeccccceeEEEEEeccccccccccC
Q psy15127        597 MNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       597 ~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s  632 (633)
                      ...+..++++|.+|++++.|.|+|+|.|..|.|+++
T Consensus       235 ~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~  270 (375)
T 3t1w_A          235 SISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL  270 (375)
T ss_dssp             EECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             EcCCCcCEEEeCCCCCCCEEEEEEEEEcCCCcCCce
Confidence            345667999999999999999999999999999874

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.80  E-value=5e-20  Score=176.29  Aligned_cols=147  Identities=16%  Similarity=0.184  Sum_probs=93.9

Q ss_pred             CCeEEEEEEe---------cCcCCeeeeCCCceEEEcCCeEEEEEEEeccC-----CCeEEEEeCC--ccC---------
Q psy15127         58 DDQWKLIAKE---------ALIKPFPISEPSDATVLSGSVVEFVCRVGGDP-----LPTILWRRDD--GKM---------  112 (633)
Q Consensus        58 ~G~Y~C~a~~---------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p-----~p~i~W~~~~--~~i---------  112 (633)
                      +|.|+|.|..         +..++.+...|..+.+.+|++++|.|.+.+.|     .+.|.|+|++  ..+         
T Consensus        16 sg~Y~C~a~g~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~   95 (254)
T 2c1o_A           16 SVKLSCKASGYSFTNYWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSK   95 (254)
T ss_dssp             ----------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTE
T ss_pred             cEEEEEcCchhhhhhhhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccc
Confidence            9999999987         23356777778899999999999999998887     4889999843  222         


Q ss_pred             -C---CCCeEEcc---cceEEEccCCCCCCeEEEEEEEeCCce-EEEEEEEEEEee--ccccccCCCceEEecCCcEEEE
Q psy15127        113 -P---TGRAKILD---DRSLQIENVGPQDEGLYICDVENLVGS-ISLRASLTVHLL--RDDFRAEPKDTRVASGETALLE  182 (633)
Q Consensus       113 -~---~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~s~~~~l~V~~~--~p~~~~~~~~~~~~~g~~~~l~  182 (633)
                       .   .+++....   ...|.|.+++.+|+|.|+|.|.|..+. ....+.|.|...  +|.+...+.......|+.+.|.
T Consensus        96 ~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~  175 (254)
T 2c1o_A           96 LDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVV  175 (254)
T ss_dssp             ECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEE
T ss_pred             cCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEE
Confidence             0   13443332   238999999999999999999987554 223345666542  2555443333333468899999


Q ss_pred             EeCCCCCCC-CeEEEEECCEEec
Q psy15127        183 CGPPKGQPE-PTLHWKKNGQFID  204 (633)
Q Consensus       183 C~~~~~~p~-~~i~W~~~~~~~~  204 (633)
                      |.+....|. +.+.|+++|..+.
T Consensus       176 C~~~g~~p~~~~v~W~k~g~~l~  198 (254)
T 2c1o_A          176 CFLNNFYPKDINVKWKIDGSERQ  198 (254)
T ss_dssp             EEEEEEBSSCCEEEEEESSSEEC
T ss_pred             EEEecccCCCcEEEEEECCCccc
Confidence            995333454 5799999987664

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.80  E-value=9.1e-19  Score=164.21  Aligned_cols=121  Identities=21%  Similarity=0.295  Sum_probs=87.5

Q ss_pred             CCceEEEcCCeEEEEEEEeccCCC---eEEEEeCCccCC------------------CCCeEEcc------cceEEEccC
Q psy15127         78 PSDATVLSGSVVEFVCRVGGDPLP---TILWRRDDGKMP------------------TGRAKILD------DRSLQIENV  130 (633)
Q Consensus        78 ~~~~~~~~G~~~~L~C~~~~~p~p---~i~W~~~~~~i~------------------~~~~~~~~------~~~L~i~~v  130 (633)
                      +..+.+.+|++++|.|.+.+.+.+   .|+|+|++....                  ..+.....      +..|.|.++
T Consensus        11 ~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   90 (226)
T 4f80_A           11 SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNV   90 (226)
T ss_dssp             SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSC
T ss_pred             CCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeC
Confidence            345789999999999999866544   699999764320                  11222221      347999999


Q ss_pred             CCCCCeEEEEEEEeCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCE
Q psy15127        131 GPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ  201 (633)
Q Consensus       131 ~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~  201 (633)
                      +.+|+|.|+|.|.|..|..+..+.+.+.   +.....+....+.+|+.+.|.|.+..+.|.++|.|++++.
T Consensus        91 ~~~D~G~Y~C~a~n~~~~~~~~v~~~~~---~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~  158 (226)
T 4f80_A           91 TASDSGKYLCYFQDGDFYEKALVELKVA---ALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKG  158 (226)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEE---BCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTS
T ss_pred             chHHCeeEEEEEECCCcEEEEEEEEeec---cceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCc
Confidence            9999999999999988876655544443   3334444556788999999999954446888999988654

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.80  E-value=3e-19  Score=176.61  Aligned_cols=186  Identities=17%  Similarity=0.176  Sum_probs=137.6

Q ss_pred             CceEEEcCCCC--CCeEEEEEEe-------------cCcCCeeeeCCCceEEEcCCeEEEEEEEe-ccCCCeEEEEeCCc
Q psy15127         47 GSVLGARGALS--DDQWKLIAKE-------------ALIKPFPISEPSDATVLSGSVVEFVCRVG-GDPLPTILWRRDDG  110 (633)
Q Consensus        47 ~~~L~i~~v~~--~G~Y~C~a~~-------------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~-~~p~p~i~W~~~~~  110 (633)
                      +++|.|.+++.  +|.|+|.+.+             +..+|.+...+....+..|+.+.|.|.+. +.|.+.++|++++.
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~  157 (313)
T 4fqp_A           78 NASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLG  157 (313)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTC
T ss_pred             ceEEEECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCc
Confidence            46799999998  9999999865             45677777777777788899999999875 78999999999988


Q ss_pred             cCCCCCeEEc-c------cceEEEccCCCCCCeEEEEEEEeCCce--EEEEEEEEEEeeccccccCC-CceEEecCCcEE
Q psy15127        111 KMPTGRAKIL-D------DRSLQIENVGPQDEGLYICDVENLVGS--ISLRASLTVHLLRDDFRAEP-KDTRVASGETAL  180 (633)
Q Consensus       111 ~i~~~~~~~~-~------~~~L~i~~v~~~d~G~Y~C~~~n~~g~--~s~~~~l~V~~~~p~~~~~~-~~~~~~~g~~~~  180 (633)
                      .+........ .      .+.|.|.++..+|+|.|+|.|.|..+.  .+..+.|.|..+ |.+.+.+ ....+.+|+.+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~-P~v~~~~~~~~~~~~g~~v~  236 (313)
T 4fqp_A          158 GMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYP-PEVSISGYDNNWYLGQNEAT  236 (313)
T ss_dssp             CEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEE-EEEEEECCCSCEETTCCCEE
T ss_pred             cccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccC-CccccccccceeecCCCeEE
Confidence            7643221111 1      236899999999999999999997655  456667777777 6665443 444667789999


Q ss_pred             EEEeCCCCCCCC-eEEEEECCEEeccCC---CeeEEeccceeeeEEEeeeEEEEeecCCCC
Q psy15127        181 LECGPPKGQPEP-TLHWKKNGQFIDLES---SKSLDLSRRTLGWLRVRPLYWNVARPRANL  237 (633)
Q Consensus       181 l~C~~~~~~p~~-~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~y~C~a~~~~~~  237 (633)
                      |.|. +.|+|.+ .|.|+++|..+....   ...+.+.+....   ..|.|+|.|.|..|.
T Consensus       237 l~C~-~~g~P~p~~v~W~~~~~~l~~~~~~~~~~L~i~~v~~~---d~G~Y~C~a~N~~G~  293 (313)
T 4fqp_A          237 LTCD-ARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKP---INTTLICNVTNALGA  293 (313)
T ss_dssp             EEEE-EEEESCCCEEEEEETTBSCCTTEEEETTEEEECCCSSC---CEEEEEEEEECSSCE
T ss_pred             EEEE-ecCCCCCcEEEEEECCEECCCceEEeCCEEEECcCChh---hCEEEEEEEEeCCCc
Confidence            9999 5888888 799999998765321   112222222222   258999999998773

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.80  E-value=2.2e-19  Score=162.98  Aligned_cols=128  Identities=19%  Similarity=0.195  Sum_probs=91.6

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCC---CCeEEcccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT---GRAKILDDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      ..+|.|...|.. .+.+|++++|.|.+.+ +.+.+.|+|+|..+..   .......+..|.|.+++.+|+|.|+|.+.|.
T Consensus         2 l~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   79 (188)
T 1oll_A            2 LPKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVG   79 (188)
T ss_dssp             CCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCC
Confidence            357888888877 7999999999999875 3568999999986531   1111123468999999999999999999887


Q ss_pred             Cce--EEEEEEEEEEee--ccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCE
Q psy15127        146 VGS--ISLRASLTVHLL--RDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ  201 (633)
Q Consensus       146 ~g~--~s~~~~l~V~~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~  201 (633)
                      .+.  .+..+.|.|...  +|.+...+ ...+.+|+.++|.|.+ .+ +.+.+.|+|+|.
T Consensus        80 ~~~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~  136 (188)
T 1oll_A           80 ELWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRL-DT-ATSMFLLLKEGR  136 (188)
T ss_dssp             TEECCCCCCEEEEEESCSCCCEEEEES-CSEEETTCEEEEEEEC-SS-SCSEEEEEEESS
T ss_pred             CCCCCCCCceEEEecccCCCCeEEECC-CCccccCCEEEEEEEc-CC-CCCEEEEEECCc
Confidence            553  356677777642  24444444 3457788888888883 33 345777777654

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.80  E-value=1.9e-19  Score=176.19  Aligned_cols=189  Identities=13%  Similarity=0.079  Sum_probs=138.8

Q ss_pred             ceEEEcCCCC--CCeEEEEEEe------------cCcCCe-eeeCCCceEEEcCCeEEEEEEEeccCC--CeEEEEeC-C
Q psy15127         48 SVLGARGALS--DDQWKLIAKE------------ALIKPF-PISEPSDATVLSGSVVEFVCRVGGDPL--PTILWRRD-D  109 (633)
Q Consensus        48 ~~L~i~~v~~--~G~Y~C~a~~------------v~~~p~-~~~~~~~~~~~~G~~~~L~C~~~~~p~--p~i~W~~~-~  109 (633)
                      +.|.|.+++.  +|.|+|.+.|            +..+|. +...+....+.+|+.+.|.|.+.+ |.  +.++|+++ +
T Consensus        51 ~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~  129 (292)
T 4dkd_C           51 SILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRG  129 (292)
T ss_dssp             EEEEESSCCGGGCSCEEECCCC----CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGG
T ss_pred             EEEEEcccccccCEEEEEEEccCCCCcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCC
Confidence            4899999998  9999999988            344444 456677888999999999999987 44  68999997 5


Q ss_pred             ccCCCC-CeEEcccceEEEccCCCCCCeEEEEEEEeCCceE-EEEEEEEEEe---eccccccCCCceEEecCCcEEEEEe
Q psy15127        110 GKMPTG-RAKILDDRSLQIENVGPQDEGLYICDVENLVGSI-SLRASLTVHL---LRDDFRAEPKDTRVASGETALLECG  184 (633)
Q Consensus       110 ~~i~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~-s~~~~l~V~~---~~p~~~~~~~~~~~~~g~~~~l~C~  184 (633)
                      ..+... +.....++.|.|.+++.+|+|.|+|.+.|..+.. +..+.|.|..   .+|.+...+....+.+|+.+.|.|.
T Consensus       130 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~  209 (292)
T 4dkd_C          130 RPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCS  209 (292)
T ss_dssp             CCCCSSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEE
T ss_pred             CccccCCcccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEE
Confidence            555444 3344445679999999999999999999887754 4578888886   1377777777777789999999999


Q ss_pred             CCCCCCCCeEEEEECCEEeccCCCeeEEec----cceeeeEEE----eeeEEEEeecCCCC
Q psy15127        185 PPKGQPEPTLHWKKNGQFIDLESSKSLDLS----RRTLGWLRV----RPLYWNVARPRANL  237 (633)
Q Consensus       185 ~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~g~y~C~a~~~~~~  237 (633)
                      +....+...+.|++++..+...........    ...+.+..+    .|.|+|.|.|..+.
T Consensus       210 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  270 (292)
T 4dkd_C          210 ASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGK  270 (292)
T ss_dssp             EEESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCE
T ss_pred             ecCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCC
Confidence            543344468999999876654333221111    112222222    48999999998774

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.79  E-value=2.8e-19  Score=166.06  Aligned_cols=133  Identities=16%  Similarity=0.129  Sum_probs=98.0

Q ss_pred             CeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC--CccC-------------CCCCeEE---cccceEEEccCCCC
Q psy15127         72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD--DGKM-------------PTGRAKI---LDDRSLQIENVGPQ  133 (633)
Q Consensus        72 p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~--~~~i-------------~~~~~~~---~~~~~L~i~~v~~~  133 (633)
                      |.+...| .+.+.+|++++|.|.+.+.+.+.+.|+|+  +...             ..+++..   ..+..|.|.+++.+
T Consensus         2 ~~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   80 (213)
T 3mj8_L            2 YTLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAG   80 (213)
T ss_dssp             CCBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eeEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChh
Confidence            4455556 88999999999999999889999999993  2211             1123332   23457999999999


Q ss_pred             CCeEEEEEEEeCCc---eEEEEEEEEEEee---ccccccCCCceEEecCCcEEEEEeCCCCCCC-CeEEEEECCEEecc
Q psy15127        134 DEGLYICDVENLVG---SISLRASLTVHLL---RDDFRAEPKDTRVASGETALLECGPPKGQPE-PTLHWKKNGQFIDL  205 (633)
Q Consensus       134 d~G~Y~C~~~n~~g---~~s~~~~l~V~~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~i~W~~~~~~~~~  205 (633)
                      |+|.|+|.|.+..+   .....+.|.|...   +|.+...+....+.+|+.+.|.|.+....|+ +.+.|+++|..+..
T Consensus        81 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  159 (213)
T 3mj8_L           81 DEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQ  159 (213)
T ss_dssp             GCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             hCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCC
Confidence            99999999999887   4566678888831   2556555555555589999999995433344 49999999887753

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.79  E-value=7.4e-19  Score=174.05  Aligned_cols=181  Identities=16%  Similarity=0.189  Sum_probs=128.0

Q ss_pred             eCceEEEcCCCC--CCeEEEEEEe-----------------c---CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeE
Q psy15127         46 FGSVLGARGALS--DDQWKLIAKE-----------------A---LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTI  103 (633)
Q Consensus        46 ~~~~L~i~~v~~--~G~Y~C~a~~-----------------v---~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i  103 (633)
                      .++.|.|.+++.  +|.|+|.|.+                 +   ..+|.+...+... +.+|+.++|.|.+. .+.+.+
T Consensus        72 ~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~  149 (316)
T 3vh8_G           72 FQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWSD-IMFEHF  149 (316)
T ss_dssp             BSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSE-EETTCCEEEEEEES-SCCSEE
T ss_pred             ceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEE
Confidence            457899999998  9999999874                 1   2346666665554 88999999999995 456789


Q ss_pred             EEEeCCccCCCCCeE---E--cccceEEEccCCCCCCeEEEEEEEeCCce-----EEEEEEEEEEee--ccccccCCCce
Q psy15127        104 LWRRDDGKMPTGRAK---I--LDDRSLQIENVGPQDEGLYICDVENLVGS-----ISLRASLTVHLL--RDDFRAEPKDT  171 (633)
Q Consensus       104 ~W~~~~~~i~~~~~~---~--~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-----~s~~~~l~V~~~--~p~~~~~~~~~  171 (633)
                      .|+|++..+......   .  .....|.|.+++.+|+|.|+|.|.|..|.     .+..+.|.|...  +|.+...+. .
T Consensus       150 ~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~-~  228 (316)
T 3vh8_G          150 FLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPG-P  228 (316)
T ss_dssp             EEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESC-S
T ss_pred             EEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCC-C
Confidence            999999877532111   1  13468999999999999999999998763     256667777643  244444443 3


Q ss_pred             EEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCC----------eeEEeccceeeeEEEeeeEEEEeecCCC
Q psy15127        172 RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS----------KSLDLSRRTLGWLRVRPLYWNVARPRAN  236 (633)
Q Consensus       172 ~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~g~y~C~a~~~~~  236 (633)
                      .+.+|+.++|.|.+ . .|.+.+.|+++|..+.....          ..+.+....     ..|.|+|.|.|..+
T Consensus       229 ~v~~G~~v~L~C~~-~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~-----D~G~Y~C~a~n~~~  296 (316)
T 3vh8_G          229 KVQAGESVTLSCSS-R-SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT-----HGGTYRCFGSFRHS  296 (316)
T ss_dssp             CCCTTSCCEEEEEE-S-SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC----------CEEEEEEEBTTB
T ss_pred             eecCCCcEEEEEEC-C-CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC-----CCEEEEEEeecCCC
Confidence            57899999999995 3 47789999999876542111          112222211     67999999999754

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.79  E-value=1.2e-18  Score=158.62  Aligned_cols=85  Identities=16%  Similarity=0.222  Sum_probs=67.2

Q ss_pred             eCCCceEEEcCCeEEEEEEEec-cCCCeEEEEeCCccCC---C----------------CCeEEcccceEEEccCCCCCC
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGG-DPLPTILWRRDDGKMP---T----------------GRAKILDDRSLQIENVGPQDE  135 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~-~p~p~i~W~~~~~~i~---~----------------~~~~~~~~~~L~i~~v~~~d~  135 (633)
                      ..|..+.+.+|++++|.|.+.+ .+.+.|.|+|++..+.   .                ++..+..+++|+|.+++.+|+
T Consensus         3 ~~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~   82 (193)
T 2if7_A            3 LTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDT   82 (193)
T ss_dssp             CCCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGC
T ss_pred             CCCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccC
Confidence            3567788999999999999875 4557899999876431   0                133344567899999999999


Q ss_pred             eEEEEEEEeCCceEEEEEEEEEEee
Q psy15127        136 GLYICDVENLVGSISLRASLTVHLL  160 (633)
Q Consensus       136 G~Y~C~~~n~~g~~s~~~~l~V~~~  160 (633)
                      |.|+|.+.+..+.....+.|.|..+
T Consensus        83 G~Y~C~~~~~~~~~~~~~~L~V~~~  107 (193)
T 2if7_A           83 GSYRAQISTKTSAKLSSYTLRILRQ  107 (193)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEECC
T ss_pred             ceEEEEEEecCCCeEEEEEEEEEcc
Confidence            9999999998887777888888765

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.79  E-value=2e-19  Score=169.34  Aligned_cols=132  Identities=21%  Similarity=0.356  Sum_probs=104.2

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccCC-CeEEEEeCCccCC--------------CCCeE----------EcccceEEEcc
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDPL-PTILWRRDDGKMP--------------TGRAK----------ILDDRSLQIEN  129 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p~-p~i~W~~~~~~i~--------------~~~~~----------~~~~~~L~i~~  129 (633)
                      +..|..+.+.+|+.+.|.|.+.+.+. +.+.|+|++....              .++..          ...++.|.|.+
T Consensus         4 v~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~   83 (231)
T 2pet_A            4 LSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAE   83 (231)
T ss_dssp             CCCCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESS
T ss_pred             ccCCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcc
Confidence            45677889999999999999998885 8999998765422              12222          44456799999


Q ss_pred             CCCCCCeEEEEEEEeCC-ceEEEEEEEEEEeec--cccccCCCceEEecCCcE-EEEEeCCCCCCCCeEEEEECCEEecc
Q psy15127        130 VGPQDEGLYICDVENLV-GSISLRASLTVHLLR--DDFRAEPKDTRVASGETA-LLECGPPKGQPEPTLHWKKNGQFIDL  205 (633)
Q Consensus       130 v~~~d~G~Y~C~~~n~~-g~~s~~~~l~V~~~~--p~~~~~~~~~~~~~g~~~-~l~C~~~~~~p~~~i~W~~~~~~~~~  205 (633)
                      ++.+|+|.|+|.+.+.. +..+..+.|.|..++  |.+...+....+.+|+.+ .|.|.+..+.|.+.+.|++++..+..
T Consensus        84 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~  163 (231)
T 2pet_A           84 AQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEV  163 (231)
T ss_dssp             CCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCC
T ss_pred             cCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCcc
Confidence            99999999999999987 778888999998763  233444555567789988 99999548899999999999998765


Q ss_pred             C
Q psy15127        206 E  206 (633)
Q Consensus       206 ~  206 (633)
                      .
T Consensus       164 ~  164 (231)
T 2pet_A          164 P  164 (231)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.79  E-value=2.7e-19  Score=161.97  Aligned_cols=170  Identities=15%  Similarity=0.265  Sum_probs=107.0

Q ss_pred             ceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEcc-CCCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy15127         80 DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIEN-VGPQDEGLYICDVENLVGSISLRASLTVH  158 (633)
Q Consensus        80 ~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~-v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~  158 (633)
                      -..+.+|+.+.|.|.+.+ +. .|+|+|+|..+...     .+++|.|.+ ++.+|+|.|+|.|.|..|..+..+.+.|.
T Consensus         8 ~~v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~-----~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~   80 (186)
T 1jbj_A            8 YKVSISGTSVELTCPLDS-DE-NLKWEKNGQELPQK-----HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVG   80 (186)
T ss_dssp             CEEEEETTEEEEECSSCC-CT-TCEEEETTEEECSC-----CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCC
T ss_pred             EEEEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCC-----CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEe
Confidence            345678999999999987 43 49999999988653     345899999 99999999999999998876555555554


Q ss_pred             eeccccccCCCc-eEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEEeeeEEEEeecCCCC
Q psy15127        159 LLRDDFRAEPKD-TRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANL  237 (633)
Q Consensus       159 ~~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~a~~~~~~  237 (633)
                      ...+.. ..+.. ..........+.+.....                   ...                           
T Consensus        81 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~---------------------------  113 (186)
T 1jbj_A           81 SADDAK-KDAAKKDDAKKDDAKKDGSQTNKA-------------------KNL---------------------------  113 (186)
T ss_dssp             SCCCCC-CCCCCCCCCSCCSSSTTCCSCCCC-------------------SSC---------------------------
T ss_pred             cccccc-cccccccccccCCccccccccccc-------------------ccc---------------------------
Confidence            331110 00000 000000000000000000                   000                           


Q ss_pred             CCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEE
Q psy15127        238 NPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA  317 (633)
Q Consensus       238 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  317 (633)
                               .....+..|+.+.|.|.+   |.|.+.|+|+|..+....         ...+.|.|.++..+|+|.|+|.|
T Consensus       114 ---------~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~---------~~~~~L~i~~v~~~D~G~Y~C~a  172 (186)
T 1jbj_A          114 ---------VQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLN---------ATKNTWNLGNNAKDPRGTYQCQG  172 (186)
T ss_dssp             ---------CEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSS---------CCSSCCEEEETTSCCEEEEEEEE
T ss_pred             ---------ccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccC---------CCcceEEECCCCcCcCEEEEEEE
Confidence                     000112356777777776   667778888777653110         14558999999999999999999


Q ss_pred             EeCCcee
Q psy15127        318 LSVAGST  324 (633)
Q Consensus       318 ~n~~g~~  324 (633)
                      .|..|..
T Consensus       173 ~N~~g~~  179 (186)
T 1jbj_A          173 AKETSNP  179 (186)
T ss_dssp             SSCEEEE
T ss_pred             EcCcCCc
Confidence            9998876

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A

Probab=99.79  E-value=6e-18  Score=171.42  Aligned_cols=211  Identities=14%  Similarity=0.129  Sum_probs=158.3

Q ss_pred             CceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCC
Q psy15127        357 LRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPR  436 (633)
Q Consensus       357 ~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~  436 (633)
                      ..+.+.+|.....|.|++.|.|..|..... ...+.  +.             +.+|..+.....+..++.|+|+++.  
T Consensus        58 ~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~-~~~~~--~~-------------~~~p~~l~~~~~~~~si~l~W~~p~--  119 (368)
T 1fnf_A           58 SSCTFDNLSPGLEYNVSVYTVKDDKESVPI-SDTII--PA-------------VPPPTDLRFTNIGPDTMRVTWAPPP--  119 (368)
T ss_dssp             CEEECCCCCTTSCEEEEEEEEETTEECCCE-EEEEC--CC-------------CCCCEEEEEESCCSSCEEEEEECCT--
T ss_pred             CEEEECCCCCCCEEEEEEEEEcCCCccCce-eeeec--CC-------------CcCCceeEEEEcCCCeEEEEeeCCC--
Confidence            345677899999999999999998865322 22221  11             1256667777778999999999996  


Q ss_pred             CCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCceeecCCCCCCCcc
Q psy15127        437 GGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQH  516 (633)
Q Consensus       437 ~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~~p~~~~~  516 (633)
                         ++.+.+|.|+|+..+....|...........++|.+|.|++.|.|+|+|.|..|.+.+..    . ....+|.+|.+
T Consensus       120 ---~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~----~-~~~~~~~~P~~  191 (368)
T 1fnf_A          120 ---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR----G-RQKTGLDSPTG  191 (368)
T ss_dssp             ---TCCCSEEEEEEEETTCTTCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE----E-EEECCCCCCEE
T ss_pred             ---CCCCcEEEEEEEECCCCCccEEEEcCCCcceEEecCCCCCCEEEEEEEEEeCCCCCCCeE----e-eecCCCCCCCc
Confidence               357899999999876555666554555678899999999999999999999999876532    1 12233444444


Q ss_pred             hHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEe
Q psy15127        517 LLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATV  596 (633)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~  596 (633)
                      +                .+..++.+++.|+|++|           .+.+.+| .|+|+......      .|.     ..
T Consensus       192 l----------------~~~~~~~~sv~l~W~~p-----------~~~i~~Y-~v~~~~~~~~~------~~~-----~~  232 (368)
T 1fnf_A          192 I----------------DFSDITANSFTVHWIAP-----------RATITGY-RIRHHPEHFSG------RPR-----ED  232 (368)
T ss_dssp             E----------------EEESCCSSEEEEEEECC-----------SSCCSEE-EEEEECSCCSS------CCE-----EE
T ss_pred             c----------------EEEEccCCEEEEEEeCC-----------CCCcCEE-EEEEecCCCCC------Ccc-----EE
Confidence            4                67788899999999943           2689999 99998775432      121     22


Q ss_pred             ecCCccceEEeeccccceeEEEEEeccccccccccC
Q psy15127        597 MNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       597 ~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s  632 (633)
                      ......++++|.+|++++.|.|+|+|.|..|.|+++
T Consensus       233 ~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~~  268 (368)
T 1fnf_A          233 RVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLL  268 (368)
T ss_dssp             EEETTCCEEEEESCCTTCEEEEEEEEEETTEECCCE
T ss_pred             EeCCCcCEEEECCCCCCCEEEEEEEEEeCCccCCcc
Confidence            234568899999999999999999999999999875

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A

Probab=99.79  E-value=2.8e-18  Score=167.61  Aligned_cols=175  Identities=19%  Similarity=0.213  Sum_probs=139.1

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRA  488 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a  488 (633)
                      .|.+|..+.+...+.+++.|+|.++.      +.+.+|.|+|+..+....|...........++|.+|.|++.|.|+|+|
T Consensus        20 ~p~~P~~l~~~~~~~~sv~l~W~~p~------~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a   93 (290)
T 3r8q_A           20 AIPAPTDLKFTQVTPTSLSAQWTPPN------VQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYA   93 (290)
T ss_dssp             CCCCCEEEEEEEECSSCEEEEEECCS------SCCCEEEEEEEESSSSSCCEEEEECTTCCEEEECSCCSSCEEEEEEEE
T ss_pred             CCCCCCceEEEECCCCEEEEEEeCCC------CCeeEEEEEEEeCCCCCceEEEEcCCCccEEEeCCCCCCCEEEEEEEE
Confidence            35677788888899999999999984      478899999998765566766555556789999999999999999999


Q ss_pred             EeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcce
Q psy15127        489 ENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGT  568 (633)
Q Consensus       489 ~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y  568 (633)
                      .|..|.|.++..  .+.|...+ .+|.++                .+..++.+++.|+|++|           ++.+.+|
T Consensus        94 ~~~~g~s~~s~~--~~~t~~~~-~~P~~l----------------~~~~~~~~sv~l~W~~p-----------~~~~~~Y  143 (290)
T 3r8q_A           94 LKDTLTSRPAQG--VVTTLENV-SPPRRA----------------RVTDATETTITISWRTK-----------TETITGF  143 (290)
T ss_dssp             EETTEECCCEEE--EEECCCCC-CCCEEE----------------EEEEECSSCEEEEEECC-----------SCCCCEE
T ss_pred             EeCCCCCCCcce--eEecCCCC-CCCcee----------------EEEEcCCCeEEEEEeCC-----------CCcccEE
Confidence            999999987643  35554433 444444                77888999999999942           4689999


Q ss_pred             eEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccC
Q psy15127        569 KVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       569 ~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s  632 (633)
                       .|+|+..+...       +     .........++++|.+|+|++.|.|+|+|.|..|.|+++
T Consensus       144 -~v~~~~~~~~~-------~-----~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~  194 (290)
T 3r8q_A          144 -QVDAVPANGQT-------P-----IQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPV  194 (290)
T ss_dssp             -EEEEEESSSCC-------C-----EEEEECTTCSEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             -EEEEEECCCCc-------c-----eEEecCCCccEEEECCCCCCCEEEEEEEEEeCCcccCCE
Confidence             99998876543       1     122344578899999999999999999999999998764

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.78  E-value=1e-18  Score=168.33  Aligned_cols=174  Identities=15%  Similarity=0.162  Sum_probs=126.3

Q ss_pred             eeCceEEEcCC---CC--CC--eEEEEEEe------------cCc--CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeE
Q psy15127         45 IFGSVLGARGA---LS--DD--QWKLIAKE------------ALI--KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTI  103 (633)
Q Consensus        45 ~~~~~L~i~~v---~~--~G--~Y~C~a~~------------v~~--~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i  103 (633)
                      ..++.|.|..+   +.  +|  .|+|.|.|            +..  +|.+.  +....+.+|+.++|.|.+.  |.+.+
T Consensus        53 ~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~~~l~V~~~p~p~~~--~~~~~v~~G~~v~l~C~~~--p~~~i  128 (265)
T 2oz4_A           53 YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVI--LTKPEVSEGTEVTVKCEAH--PRAKV  128 (265)
T ss_dssp             ECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEE--ESCSEEETTCEEEEEEECC--TTSEE
T ss_pred             eCCCeEEEEeecccccccCCcceEEEEEecCCCCcEEEEEEEEeCCCCceee--cCCceecCCCcEEEEEEcc--CCCEE
Confidence            34456777766   33  66  59999998            322  34444  3456688999999999987  88999


Q ss_pred             EEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCC-ceEE---EEEEEEEEeeccccccC--CCceEEecCC
Q psy15127        104 LWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLV-GSIS---LRASLTVHLLRDDFRAE--PKDTRVASGE  177 (633)
Q Consensus       104 ~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~-g~~s---~~~~l~V~~~~p~~~~~--~~~~~~~~g~  177 (633)
                      +|  +|..+....    ..+.|.|..+..+|+|.|+|.|.|.. |...   ..+.|.|..+ |.+...  |....+.+|+
T Consensus       129 ~W--~g~~~~~~~----~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~-p~~~~~~~p~~~~v~~g~  201 (265)
T 2oz4_A          129 TL--NGVPAQPLG----PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYG-PRLDERDCPGNWTWPENS  201 (265)
T ss_dssp             EE--SSCSSSCCS----SEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEE-EECCGGGSCSEEEEETTC
T ss_pred             EE--CCEEccCCC----CcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeC-CccccccCCCccEEcCCC
Confidence            99  777774322    22578899999999999999998544 6544   7788999887 554433  5567889999


Q ss_pred             cEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEEeeeEEEEeecCCCC
Q psy15127        178 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANL  237 (633)
Q Consensus       178 ~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~a~~~~~~  237 (633)
                      .+.|.|. +.|.|.+.+.|++++..+...... +.+      .....|.|+|.|.|..+.
T Consensus       202 ~~~l~C~-~~g~P~p~i~W~~~~~~~~~~g~~-~~v------~~~d~G~Y~C~a~N~~G~  253 (265)
T 2oz4_A          202 QQTPMCQ-AWGNPLPELKCLKDGTFPLPIGES-VTV------TRDLEGTYLCRARSTQGE  253 (265)
T ss_dssp             EECCCCC-CEEESCCEEEEEETTTEECCTTSC-EEC------CGGGCEEEEEEEEETTEE
T ss_pred             eEEEEeE-CccCCCCeEEEEECCcccCCCCcE-EEe------ehhhCeEEEEEEECCCCc
Confidence            9999999 699999999999998833222111 111      112358999999998763

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.77  E-value=5.5e-18  Score=158.37  Aligned_cols=124  Identities=23%  Similarity=0.332  Sum_probs=91.2

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCC-----CeEEEEeCCccC---------C-------CCCeEEccc------ceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPL-----PTILWRRDDGKM---------P-------TGRAKILDD------RSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~-----p~i~W~~~~~~i---------~-------~~~~~~~~~------~~L~i~  128 (633)
                      ..+..+.+.+|+++.|.|.+.+.|.     +.+.|+|++..+         .       .++.....+      ..|.|.
T Consensus         6 ~p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~   85 (222)
T 3sbw_C            6 VPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQIT   85 (222)
T ss_dssp             CSCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEES
T ss_pred             cCCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEc
Confidence            4456678999999999999877663     389999975322         1       133333322      489999


Q ss_pred             cCCCCCCeEEEEEEEeCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEEC-CEE
Q psy15127        129 NVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKN-GQF  202 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~-~~~  202 (633)
                      +++.+|+|.|+|.+.+ .+.....+.|.|..+ +..........+.+|+.+.|.|. +.|.|.+.+.|+++ +..
T Consensus        86 ~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~-~~~~~~~~~~~~~~g~~v~L~C~-~~g~P~p~i~W~~~~g~~  157 (222)
T 3sbw_C           86 DVKLQDAGVYRCMISY-GGADYKRITVKVNAP-YNKINQRILVVDPVTSEHELTCQ-AEGYPKAEVIWTSSDHQV  157 (222)
T ss_dssp             SCCGGGCEEEEEEEES-SSEEEEEEEEEEEBC-CCCCEEEEEEEETTTTEEEEEEE-EEEBSCCEEEEEETTCCE
T ss_pred             CcccccCeEEEEEEEe-CCCceeEEEEEEECC-CCCCCceeeeeecCCCcEEEEEE-ecCCCCCeEEEEECCCce
Confidence            9999999999999998 566777888888876 33222222225678999999999 47789999999998 443

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.77  E-value=1.8e-18  Score=160.92  Aligned_cols=178  Identities=17%  Similarity=0.210  Sum_probs=113.2

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCC---eEEEEeCCccCCCC-------------------CeEEc------ccceEEE
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLP---TILWRRDDGKMPTG-------------------RAKIL------DDRSLQI  127 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p---~i~W~~~~~~i~~~-------------------~~~~~------~~~~L~i  127 (633)
                      ..|..+.+.+|++++|.|.+.+.|.+   .|+|+|++..+...                   +....      .+.+|.|
T Consensus         4 ~~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I   83 (218)
T 4frw_A            4 ETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLL   83 (218)
T ss_dssp             ECCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEE
T ss_pred             eCCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEE
Confidence            45678899999999999999887765   48999987654311                   11111      1357999


Q ss_pred             ccCCCCCCeEEEEEEEeCCce-EEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccC
Q psy15127        128 ENVGPQDEGLYICDVENLVGS-ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLE  206 (633)
Q Consensus       128 ~~v~~~d~G~Y~C~~~n~~g~-~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~  206 (633)
                      .+++.+|+|.|.|.+.+..+. ......+.+..+++.....+....+..|+.+.|.|. ..+.|.+.|.|++++.     
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~-~~g~p~p~i~W~~~~~-----  157 (218)
T 4frw_A           84 RNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCT-AEGSPAPSVTWDTEVK-----  157 (218)
T ss_dssp             SSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEE-EEEBSCCEEEEEESSC-----
T ss_pred             eeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeee-ccCCcCceEEEEECCc-----
Confidence            999999999999999887665 344444555444222233333334445555555555 3445555555555443     


Q ss_pred             CCeeEEeccceeeeEEEeeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccC
Q psy15127        207 SSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPG  286 (633)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~  286 (633)
                                                                                               .+.....
T Consensus       158 -------------------------------------------------------------------------~~~~~~~  164 (218)
T 4frw_A          158 -------------------------------------------------------------------------GTTSSRS  164 (218)
T ss_dssp             -------------------------------------------------------------------------CEEEEEE
T ss_pred             -------------------------------------------------------------------------ccccCce
Confidence                                                                                     3221000


Q ss_pred             CccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127        287 NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR  333 (633)
Q Consensus       287 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  333 (633)
                      .... ......+.|.|..+..+|.|.|+|.|.|..|..+..+.+.|.
T Consensus       165 ~~~~-~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~  210 (218)
T 4frw_A          165 FKHS-RSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH  210 (218)
T ss_dssp             EECS-SSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred             EecC-CcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence            0000 001122479999999999999999999999988776666654

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1

Probab=99.77  E-value=1.4e-17  Score=162.09  Aligned_cols=173  Identities=16%  Similarity=0.167  Sum_probs=134.3

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRA  488 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a  488 (633)
                      .|.+|..+.+...+.+++.|+|+++.      +.+.+|.|+|+.......|...........++|.+|.|++.|.|+|+|
T Consensus        14 ~p~~P~~l~~~~~~~~sv~l~W~~~~------~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a   87 (283)
T 1tdq_A           14 VIDGPTQILVRDVSDTVAFVEWTPPR------AKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISA   87 (283)
T ss_dssp             SSCCCEEEEEEEECSSCEEEEEECCS------SCCSEEEEEEEESSSSCCCEEEEECTTCSEEEECSCCTTCEEEEEEEE
T ss_pred             CCCCCcEEEEEecCCCeEEEEEECCC------CceeEEEEEEEEecCCCCcEEEEeCCCCCEEEecCCCCCCEEEEEEEE
Confidence            35678888888889999999999987      368899999987654455654444456788999999999999999999


Q ss_pred             EeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcce
Q psy15127        489 ENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGT  568 (633)
Q Consensus       489 ~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y  568 (633)
                      .|..|.+.+...  .+.   .+|.+|.++                .+..++.+++.|+|++|           .+.+.+|
T Consensus        88 ~~~~g~s~~~~~--~~~---t~p~~P~~l----------------~~~~~~~~sv~l~W~~p-----------~~~i~~Y  135 (283)
T 1tdq_A           88 VRGTNESDASST--QFT---TEIDAPKNL----------------RVGSRTATSLDLEWDNS-----------EAEAQEY  135 (283)
T ss_dssp             EETTEECCCEEE--EEE---CCCCCCEEE----------------EEEEECSSCEEEEEECC-----------SSCCSEE
T ss_pred             ECCCCCCCCeeE--EEE---CCCCCCCce----------------EEEecCCCeEEEEecCC-----------CCCccEE
Confidence            999998754221  122   345555555                78888999999999954           1689999


Q ss_pred             eEEEEEEcCCCcccceeeeeeccceeEeecCCc---cceEEeeccccceeEEEEEeccccccccccC
Q psy15127        569 KVVNLRELIPTASTAVRITWEKYNMATVMNAAT---TTSYTVTHLRKFTKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       569 ~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~---~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s  632 (633)
                       .|+|+..+...       |.     .+.....   .++++|.+|+|++.|.|+|+|.|..|+|+++
T Consensus       136 -~v~~~~~~~~~-------~~-----~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~  189 (283)
T 1tdq_A          136 -KVVYSTLAGEQ-------YH-----EVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPA  189 (283)
T ss_dssp             -EEEEEETTCCC-------CE-----EEEEECCSSSEEEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             -EEEEEeCCCCc-------ce-----EEECCCCCcccceEEEecCCCCCEEEEEEEEEeCCCCCcce
Confidence             99998876543       22     2222334   7899999999999999999999999998764

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.77  E-value=3.9e-18  Score=156.86  Aligned_cols=137  Identities=14%  Similarity=0.189  Sum_probs=108.2

Q ss_pred             CCCCccccccceeeEEEEecccCCCCCceEEeeCc-----eEEEcCCCC--CCeEEEEEEe--------cC---------
Q psy15127         14 SSPRAEIEPATRTNRVSISGDPGFDSRRSRSIFGS-----VLGARGALS--DDQWKLIAKE--------AL---------   69 (633)
Q Consensus        14 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~L~i~~v~~--~G~Y~C~a~~--------v~---------   69 (633)
                      +.|.+.|+       |..+|.++..+.++++..++     .|.|.+++.  +|.|+|.|.|        +.         
T Consensus        29 ~~P~p~i~-------W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~Ng~a~~~~~~~~~~~~~~~~  101 (207)
T 3rbs_A           29 LSGNAKVN-------YIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKL  101 (207)
T ss_dssp             CCSCCEEE-------EEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEETTEEEEEEEEECTHHHHHH
T ss_pred             CCCCCEEE-------EEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEECCCeEEEEEEEEEccchhhh
Confidence            45778888       55666666666676665443     599999998  9999998776        10         


Q ss_pred             --------------cCCeeeeCCCceEEEcCCeEEEEEEEecc-CCCeEEEEeCCccCCCCCeEEcc--cceEEEccCCC
Q psy15127         70 --------------IKPFPISEPSDATVLSGSVVEFVCRVGGD-PLPTILWRRDDGKMPTGRAKILD--DRSLQIENVGP  132 (633)
Q Consensus        70 --------------~~p~~~~~~~~~~~~~G~~~~L~C~~~~~-p~p~i~W~~~~~~i~~~~~~~~~--~~~L~i~~v~~  132 (633)
                                    .+|.|...+ ...+.+|+.+.|.|.+.|. |.|.|+|+|+|..+..+......  ...|.|.+++.
T Consensus       102 ~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~  180 (207)
T 3rbs_A          102 QKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSK  180 (207)
T ss_dssp             HHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCCCCSSEEEEEEETTCCG
T ss_pred             cccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCceEcCCCEEEEEECCCCc
Confidence                          257776555 4788999999999999998 99999999999988654332222  24699999999


Q ss_pred             CCCeEEEEEEEeCCceEEEEEEEEEE
Q psy15127        133 QDEGLYICDVENLVGSISLRASLTVH  158 (633)
Q Consensus       133 ~d~G~Y~C~~~n~~g~~s~~~~l~V~  158 (633)
                      +|+|.|+|.|.|..|..+..+.|.+.
T Consensus       181 ~D~G~Y~C~a~N~~G~~~~~~~L~~~  206 (207)
T 3rbs_A          181 KDAGIYEVILKDDRGKDKSRLKLVDE  206 (207)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred             ccCEEEEEEEEcCCCEEEEEEEEecC
Confidence            99999999999999999888887653

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.76  E-value=1e-17  Score=161.52  Aligned_cols=197  Identities=21%  Similarity=0.339  Sum_probs=127.3

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEe---ccCCCeEEEEeCCccCCC-------------------CCeEEc-----ccc
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVG---GDPLPTILWRRDDGKMPT-------------------GRAKIL-----DDR  123 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~---~~p~p~i~W~~~~~~i~~-------------------~~~~~~-----~~~  123 (633)
                      .+.+...+..+.+.+|+.++|.|.+.   +.+.+.|.|+|++.....                   ++....     .+.
T Consensus         5 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   84 (268)
T 3mj6_A            5 LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDG   84 (268)
T ss_dssp             -------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBC
T ss_pred             ccccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEE
Confidence            35566778889999999999999997   677778999996653321                   233221     236


Q ss_pred             eEEEccCCCCCCeEEEEEEEeCCceE--EEEEEEEEEeeccccccCCCceEEecCCcEEEEEeC--CCCCCCCeEEEEEC
Q psy15127        124 SLQIENVGPQDEGLYICDVENLVGSI--SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGP--PKGQPEPTLHWKKN  199 (633)
Q Consensus       124 ~L~i~~v~~~d~G~Y~C~~~n~~g~~--s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~--~~~~p~~~i~W~~~  199 (633)
                      .|.|.+++.+|+|.|+|.+.+..+..  +..+.|.|...      .|....+.+|+.+.|.|.+  ..+.|.+.+.|+++
T Consensus        85 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~------~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~  158 (268)
T 3mj6_A           85 SLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPE------EPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFS  158 (268)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECC------CCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEE
T ss_pred             EEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEecc------CCCccccccCCcEEEEEEecCCCCCCccceEEEec
Confidence            89999999999999999999875543  44555555422      4557789999999999995  26789999999984


Q ss_pred             CEEeccCCCeeEEeccceeeeEEEeeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCE
Q psy15127        200 GQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGS  279 (633)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~  279 (633)
                      +...... ...+....                                                  +.+.  ..-..++ 
T Consensus       159 ~~~~~~~-~~~~~~~~--------------------------------------------------~~~~--~~~~~~~-  184 (268)
T 3mj6_A          159 SGSHTEE-ETVLSYDS--------------------------------------------------NMRS--GKFQSLG-  184 (268)
T ss_dssp             CTTCSSC-EEEEEEET--------------------------------------------------TSSS--CEEECSS-
T ss_pred             CCCCCcc-eeEEEecC--------------------------------------------------CCCc--ccccccc-
Confidence            3211000 00000000                                                  0000  0000000 


Q ss_pred             EEEeccCCccceEEE-----ccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEe
Q psy15127        280 QVLMFPGNAYGHLHV-----TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE  334 (633)
Q Consensus       280 ~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  334 (633)
                             .-..++..     ..++.|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus       185 -------~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~  237 (268)
T 3mj6_A          185 -------RFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ  237 (268)
T ss_dssp             -------TTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             -------ccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEc
Confidence                   00011122     2355899999999999999999999999988888888853

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E

Probab=99.76  E-value=2.1e-19  Score=201.70  Aligned_cols=227  Identities=14%  Similarity=0.091  Sum_probs=161.8

Q ss_pred             CceEEecccccCCEEEEEEE-EcCCcce----eEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeC
Q psy15127        357 LRRIACDLRETDSGLYTCTA-SSESGET----SWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWG  431 (633)
Q Consensus       357 ~~~~i~~~~~~d~g~y~c~a-~n~~g~~----~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~  431 (633)
                      ..+.+.+|.+...|.|++.| .|..|..    ..+..+.+...+.            .|++|..+.....+++++.|+|+
T Consensus       549 ~~~~l~~L~P~T~Y~~~V~A~~n~~G~~~~~~~~S~~v~~~T~~~------------~Ps~P~~l~~~~~s~tsI~LsW~  616 (897)
T 2dtg_E          549 PGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDAT------------NPSVPLDPISVSNSSSQIILKWK  616 (897)
T ss_dssp             CEEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCCCC------------CCCCCEEEEEEECSSSCEEEEEE
T ss_pred             cceEeCCCCCCcEEEEEEEEEEeccCCccccCCccceEEEECCCC------------CCcCCcceEEEeCCCCEEEEEEe
Confidence            45678899999999999999 8988862    2222233332222            35677778888888999999999


Q ss_pred             CCCCCCCCCcceeEEEEEEEEecCCC------------------------------------------------------
Q psy15127        432 EPEPRGGGVAPVIGYTVEYFSSDLQT------------------------------------------------------  457 (633)
Q Consensus       432 ~~~~~~~~~~~i~~Y~v~~~~~~~~~------------------------------------------------------  457 (633)
                      +|...   ++.+.+|.|+|+..+...                                                      
T Consensus       617 pP~~~---nG~I~~Y~V~~~~~~~~~~~~~~~~~~~~~l~p~t~Y~~~V~A~~~~~~s~~~~~~~~~~~~~~p~~p~~~~  693 (897)
T 2dtg_E          617 PPSDP---NGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQIL  693 (897)
T ss_dssp             CCCCS---SSSCSEEECCEEEECCCCSCTTCSSSCSCCCCCC--------------------------------------
T ss_pred             CCCCC---CCCeeEEEEEEEECCCCccceecccccCCCcCCccccceeeecccccCcccccccccCCCccCCcCcccchh
Confidence            99643   578999999988643210                                                      


Q ss_pred             ----------CeEEEE--------------------------------EeeeeceEEEecCCCCCeEEEEEEEEeccccC
Q psy15127        458 ----------GWVVAA--------------------------------HRITSTSITVSDLKPDTSYMFIVRAENSHGLG  495 (633)
Q Consensus       458 ----------~~~~~~--------------------------------~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g  495 (633)
                                .|....                                .....+.++|.+|.|++.|.|+|+|.|..|.|
T Consensus       694 ~~~~~~s~~~~W~~~~~n~v~~~~p~~~r~~l~~~~n~t~~~~~~~~~~~~~~t~~~i~gL~p~t~Y~~~V~A~n~~G~g  773 (897)
T 2dtg_E          694 KELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPE  773 (897)
T ss_dssp             ------------------------------------------CCSCSCEECSCSEEEECSSCSSCEEEECCEEESCSSSS
T ss_pred             hhhhhhheeeeEEEccCceEEccCCCcccccccccccccCccccceEEecCCceEEEECCCCCCcEEEEEEEEEeCCCCC
Confidence                      111000                                00123689999999999999999999999998


Q ss_pred             CC-CC-CCCceeecC--CCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEE
Q psy15127        496 IP-SP-VSPITRTLG--LNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVV  571 (633)
Q Consensus       496 ~~-s~-~~~~~~t~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i  571 (633)
                      ++ +. ....++|.+  .+|.+|..+                .+..++.++|.|+|++|        ...+|.|.+| .|
T Consensus       774 ~~~s~s~~v~~~T~~~~~~p~~P~~l----------------~~~~~~~~sv~LsW~~P--------~~~nG~I~~Y-~V  828 (897)
T 2dtg_E          774 ERCSVAAYVSARTMPEAKADDIVGPV----------------THEIFENNVVHLMWQEP--------KEPNGLIVLY-EV  828 (897)
T ss_dssp             CCBCCCCCEEEECCCCCCCCCCCCCC----------------CCCSSSSSCCCCCCCCC--------CSCSSCEEEE-CC
T ss_pred             CCCCCCceeEEeccCccCCCCCCcce----------------EEEeCCCCEEEEEECCC--------CCCCCCEEEE-EE
Confidence            75 22 222456665  345666655                67788899999999965        4578899999 99


Q ss_pred             EEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        572 NLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       572 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +|+..+. +       |... ..........+.++|.+|+|+ .|.|+|+|.|.+|.|++|+
T Consensus       829 ~y~~~~~-~-------~~~~-~~~~~~~~~~~~~~l~~L~pg-tY~~rV~A~n~~G~G~~S~  880 (897)
T 2dtg_E          829 SYRRYGD-E-------ELHL-CDTRKHFALERGCRLRGLSPG-NYSVRIRATSLAGNGSWTE  880 (897)
T ss_dssp             CCBSSSB-C-------CCCC-CCCSSSCCCTTCCCCCSCCSS-EECCCCCEEETTBCCCCCC
T ss_pred             EEEECCC-c-------ceEE-EEeeeeecccCcEEECCCCCC-cEEEEEEEEeCCcccCCCC
Confidence            9987654 2       1110 011112346788999999999 5999999999999999985

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.76  E-value=2.3e-17  Score=155.94  Aligned_cols=126  Identities=22%  Similarity=0.370  Sum_probs=93.4

Q ss_pred             eeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC----------------CCCCeEEcc----cceEEEccC
Q psy15127         73 FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM----------------PTGRAKILD----DRSLQIENV  130 (633)
Q Consensus        73 ~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i----------------~~~~~~~~~----~~~L~i~~v  130 (633)
                      .+...|..+.+.+|++++|.|. .+.|.+.|.|+|+.  ..+                ..+++....    ..+|.|.++
T Consensus         2 ~v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v   80 (238)
T 2p1y_A            2 AVTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELA   80 (238)
T ss_dssp             CEEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSC
T ss_pred             cceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecC
Confidence            3556788899999999999999 67888999999952  110                123443332    347999999


Q ss_pred             CCCCCeEEEEEEEeCCce-----EEEEEEEEEEeecc-----------ccccCCCceEEecCCcEEEEEeCCCCCCCCeE
Q psy15127        131 GPQDEGLYICDVENLVGS-----ISLRASLTVHLLRD-----------DFRAEPKDTRVASGETALLECGPPKGQPEPTL  194 (633)
Q Consensus       131 ~~~d~G~Y~C~~~n~~g~-----~s~~~~l~V~~~~p-----------~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i  194 (633)
                      +.+|+|.|.|.+.|..+.     ....+.|.|...++           .+...|....+.+|++++|.|. ..+.|.+.+
T Consensus        81 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~-~~~~p~~~i  159 (238)
T 2p1y_A           81 TPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCS-YENSAFDYF  159 (238)
T ss_dssp             CGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEE-CCCTTCCEE
T ss_pred             CcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEE-EecCCCCcE
Confidence            999999999999987542     12345777776532           4555677788999999999999 578888999


Q ss_pred             EEEECC
Q psy15127        195 HWKKNG  200 (633)
Q Consensus       195 ~W~~~~  200 (633)
                      .|+|++
T Consensus       160 ~W~k~~  165 (238)
T 2p1y_A          160 PWYQQF  165 (238)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999863

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.76  E-value=4.6e-18  Score=160.29  Aligned_cols=128  Identities=19%  Similarity=0.193  Sum_probs=92.3

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCC---CCeEEcccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT---GRAKILDDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      ..+|.|...|.. .+.+|++++|.|.+.+ +.+.+.|+|++..+..   .......+..|.|.+++.+|+|.|+|.+.+.
T Consensus         5 ~~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   82 (242)
T 1p6f_A            5 LPKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVG   82 (242)
T ss_dssp             CCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecC
Confidence            457888888877 7999999999999864 4568999999986531   1111123468999999999999999999886


Q ss_pred             Cce--EEEEEEEEEEee--ccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCE
Q psy15127        146 VGS--ISLRASLTVHLL--RDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ  201 (633)
Q Consensus       146 ~g~--~s~~~~l~V~~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~  201 (633)
                      .+.  .+..+.|.|...  +|.+...+ ...+.+|++++|.|.+ .+. .+.+.|+|+|.
T Consensus        83 ~~~s~~S~~~~L~V~~~~~~P~i~~~p-~~~v~~G~~vtL~C~~-~~~-~~~~~w~k~g~  139 (242)
T 1p6f_A           83 ELWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRL-DTA-TSMFLLLKEGR  139 (242)
T ss_dssp             TEECCCCCCEEEEEECCSCCCEEEEES-CSEEETTCEEEEEEEC-TTS-CSEEEEEECSS
T ss_pred             CccccCCcceEEEeecccCCCceEccC-CCccCCCCcEEEEEec-CCC-CCEEEEEECCC
Confidence            543  356677888753  24444444 3457889999999984 333 34777877764

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.75  E-value=2.1e-18  Score=160.15  Aligned_cols=133  Identities=19%  Similarity=0.263  Sum_probs=95.9

Q ss_pred             eeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCc--cC----------C---CCCeEEcc---cceEEEccCCCCC
Q psy15127         73 FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG--KM----------P---TGRAKILD---DRSLQIENVGPQD  134 (633)
Q Consensus        73 ~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~--~i----------~---~~~~~~~~---~~~L~i~~v~~~d  134 (633)
                      .++..|..+.+.+|++++|.|.+.+.|.+.|.|+|++.  .+          .   .++.....   ...|.|.+++.+|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (213)
T 3d9a_L            3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED   82 (213)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhh
Confidence            34566788899999999999999998888999998542  11          0   13443332   2489999999999


Q ss_pred             CeEEEEEEEeCCceE-EEEEEEEEEee--ccccccCCCceEEecCCcEEEEEeCCCCCCCC-eEEEEECCEEecc
Q psy15127        135 EGLYICDVENLVGSI-SLRASLTVHLL--RDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFIDL  205 (633)
Q Consensus       135 ~G~Y~C~~~n~~g~~-s~~~~l~V~~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~~~~~~~  205 (633)
                      +|.|+|.|.|..+.. ...+.|.|...  +|.+...+.......|+.+.|.|.+....|.+ .+.|+++|..+..
T Consensus        83 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~  157 (213)
T 3d9a_L           83 FGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQN  157 (213)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             CEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcc
Confidence            999999999887653 33446777652  25555434333345799999999954336665 8999999987753

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A

Probab=99.75  E-value=1.1e-17  Score=155.32  Aligned_cols=184  Identities=14%  Similarity=0.131  Sum_probs=124.7

Q ss_pred             CCCCCCCCcEEEEe-eCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCC-----CCeEEEEEe--eeeceEEEecCCCC
Q psy15127        408 LFPGPPAAPVILNT-TRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQ-----TGWVVAAHR--ITSTSITVSDLKPD  479 (633)
Q Consensus       408 ~~p~~p~~~~~~~~-~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~-----~~~~~~~~~--~~~~~~~i~~L~p~  479 (633)
                      .+|++|..+.+... ...++.++|+++.+.   +. ...|.|.|+..+..     ..+......  .....+.+.+|.++
T Consensus         3 ~pP~~P~~l~c~~~~~~~~~~~~W~p~~~~---~~-~~~Y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~   78 (215)
T 1cd9_B            3 YPPASPSNLSCLMHLTTNSLVCQWEPGPET---HL-PTSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLY   78 (215)
T ss_dssp             CCCCCCEEEEEEEETTTTEEEEEEECCSCC---SS-CCEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTT
T ss_pred             CCCCCCeeeeeecCCCcccEEEEecCCCCC---CC-ceeEEEEEEecCCcccccccccccCCCCCCCcEEEECCcccccc
Confidence            35677877777766 578999999998743   33 45699999875421     112211111  12345677799999


Q ss_pred             CeEEEEEEEEeccccCCCCCCCCceeecC-CCCCCCcchHHHHHHHhCCceEEeeeeeec------ccceEEEEEEEecC
Q psy15127        480 TSYMFIVRAENSHGLGIPSPVSPITRTLG-LNSLVPQHLLDEARARLGTKVVNLRELIPT------ASTAVRITWEVSWG  552 (633)
Q Consensus       480 ~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~si~v~W~~p~~  552 (633)
                      +.|.|+|.|.|..|.+.. ... .+.+.. ..|.+|.++                .+...      +.+++.|+|++|  
T Consensus        79 ~~Y~~~V~A~N~~G~~~s-~~~-~~~~~~~v~p~pP~~~----------------~~~~~~~~~~~~~~~~~l~W~~p--  138 (215)
T 1cd9_B           79 QYMAIWVQAENMLGSSES-PKL-CLDPMDVVKLEPPMLQ----------------ALDIGPDVVSHQPGCLWLSWKPW--  138 (215)
T ss_dssp             SCEEEEEEEEETTEEEEC-CCE-EECGGGGBCCCCCEEE----------------ECCC-------CCSCEEEEEECC--
T ss_pred             eEEEEEEEEECCCCCccC-ccE-EEchHHceEeCCCcEE----------------EEEEeccccCCCCCeEEEEEeCC--
Confidence            999999999999998742 222 233333 234444444                55555      678999999954  


Q ss_pred             CCcccccchhhhhcceeEEEEE-EcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEecccccccccc
Q psy15127        553 SVPQHLLDEARARLGTKVVNLR-ELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGAR  631 (633)
Q Consensus       553 ~~p~~~~~~~~~i~~y~~i~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~  631 (633)
                            ...+..+.+| .|+|+ ..+..       .|..+..    ..+..+.++|.+|+|++.|.|+|+|.|..|.|.+
T Consensus       139 ------~~~~~~~l~Y-~v~y~~~~~~~-------~w~~~~~----~~~~~~~~~l~~L~p~t~Y~~~Vra~~~~g~G~w  200 (215)
T 1cd9_B          139 ------KPSEYMEQEC-ELRYQPQLKGA-------NWTLVFH----LPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFW  200 (215)
T ss_dssp             ------GGGTTSCEEE-EEEEEESSTTC-------CCEEEEE----EESCEEEEEECCCCSCSCEEEEEEEEESSSCCCC
T ss_pred             ------CCCCeEEEEE-EEEEccCCCCC-------CcEEEec----ccCcceEEEEcCCCCCCEEEEEEEeeECCCCCCC
Confidence                  2233344899 99999 55443       3754321    1234688999999999999999999999999876


Q ss_pred             CC
Q psy15127        632 LD  633 (633)
Q Consensus       632 s~  633 (633)
                      |+
T Consensus       201 S~  202 (215)
T 1cd9_B          201 SP  202 (215)
T ss_dssp             CC
T ss_pred             cC
Confidence            64

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.74  E-value=3.8e-18  Score=157.98  Aligned_cols=130  Identities=18%  Similarity=0.241  Sum_probs=92.9

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC-------------CCCCeEEcc---cceEEEccCCCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM-------------PTGRAKILD---DRSLQIENVGPQDE  135 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i-------------~~~~~~~~~---~~~L~i~~v~~~d~  135 (633)
                      +.. |..+.+.+|++++|.|.+.+.|.+.|.|+|++  ..+             ..+++....   ...|.|.+++.+|+
T Consensus         4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   82 (210)
T 1lk3_L            4 LTQ-PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDT   82 (210)
T ss_dssp             EEC-CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEC-CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHC
Confidence            444 88899999999999999999888899999953  221             013433332   24899999999999


Q ss_pred             eEEEEEEEeCCceE-EEEEEEEEEee--ccccccCCCceEEecCCcEEEEEeCCCCCCCC-eEEEEECCEEec
Q psy15127        136 GLYICDVENLVGSI-SLRASLTVHLL--RDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFID  204 (633)
Q Consensus       136 G~Y~C~~~n~~g~~-s~~~~l~V~~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~~~~~~  204 (633)
                      |.|+|.|.|..+.. ...+.|.|...  +|.+...+....+..|+.+.|.|.+....|.+ .|.|+++|..+.
T Consensus        83 G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~  155 (210)
T 1lk3_L           83 AIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERR  155 (210)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             eEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCC
Confidence            99999999876642 33446777652  25554433333345799999999954335554 899999988764

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.74  E-value=4.9e-17  Score=145.57  Aligned_cols=83  Identities=16%  Similarity=0.259  Sum_probs=66.1

Q ss_pred             CCceEEEcCCeEEEEEEEe--ccCCCeEEEEe--CCccC-----------CCCCeEEcccceEEEccCCCCCCeEEEEEE
Q psy15127         78 PSDATVLSGSVVEFVCRVG--GDPLPTILWRR--DDGKM-----------PTGRAKILDDRSLQIENVGPQDEGLYICDV  142 (633)
Q Consensus        78 ~~~~~~~~G~~~~L~C~~~--~~p~p~i~W~~--~~~~i-----------~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~  142 (633)
                      +..+.+.+|++++|.|...  +.+.+.|.|+|  ++..|           ..++..+..+++|.|.+++.+|+|.|+|.+
T Consensus         6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~   85 (182)
T 1hnf_A            6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSI   85 (182)
T ss_dssp             CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred             ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEE
Confidence            4457789999999999542  24567899999  88765           345777778889999999999999999999


Q ss_pred             EeCCceE--EEEEEEEEEee
Q psy15127        143 ENLVGSI--SLRASLTVHLL  160 (633)
Q Consensus       143 ~n~~g~~--s~~~~l~V~~~  160 (633)
                      .|..|..  +..+.|.|..+
T Consensus        86 ~n~~g~~~~~~~~~L~V~~~  105 (182)
T 1hnf_A           86 YDTKGKNVLEKIFDLKIQER  105 (182)
T ss_dssp             EETTSCEEEEEEEEEEEECC
T ss_pred             EeCCCceeEEEEEEEEEcCc
Confidence            9988764  35667777754

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.74  E-value=4.4e-18  Score=158.56  Aligned_cols=132  Identities=24%  Similarity=0.348  Sum_probs=94.4

Q ss_pred             CeeeeCCCceEEEcCCeEEEEEEEecc-CCCeEEEEeCC--ccC-----------------CCCCeEEc---ccceEEEc
Q psy15127         72 PFPISEPSDATVLSGSVVEFVCRVGGD-PLPTILWRRDD--GKM-----------------PTGRAKIL---DDRSLQIE  128 (633)
Q Consensus        72 p~~~~~~~~~~~~~G~~~~L~C~~~~~-p~p~i~W~~~~--~~i-----------------~~~~~~~~---~~~~L~i~  128 (633)
                      |.+...| .+.+.+|++++|.|.+.+. |.+.+.|+|+.  ...                 ..+++...   .+.+|.|.
T Consensus         2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   80 (218)
T 3s96_B            2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSIS   80 (218)
T ss_dssp             CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEES
T ss_pred             CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEc
Confidence            4555566 8899999999999999988 88999999932  110                 01233322   23569999


Q ss_pred             cCCCCCCeEEEEEEEeCCc-----eEEEEEEEEEEee---ccccccCCCceEEecCCcEEEEEeCCCCCCCC-eEEEEEC
Q psy15127        129 NVGPQDEGLYICDVENLVG-----SISLRASLTVHLL---RDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKN  199 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~n~~g-----~~s~~~~l~V~~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~  199 (633)
                      +++.+|+|.|.|.|.+..|     .....+.|.|...   +|.+...+....+..|+.+.|.|.+..+.|.+ .|.|+++
T Consensus        81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~  160 (218)
T 3s96_B           81 NIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKAN  160 (218)
T ss_dssp             SCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             cCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEEC
Confidence            9999999999999998775     3345567888742   24554444444455689999999954336766 8999999


Q ss_pred             CEEec
Q psy15127        200 GQFID  204 (633)
Q Consensus       200 ~~~~~  204 (633)
                      |..+.
T Consensus       161 g~~l~  165 (218)
T 3s96_B          161 GTPIT  165 (218)
T ss_dssp             TEEC-
T ss_pred             CEECc
Confidence            88765

>4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}

Probab=99.74  E-value=1.6e-18  Score=162.42  Aligned_cols=166  Identities=14%  Similarity=0.064  Sum_probs=101.5

Q ss_pred             CcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCceeecCCCCCCCcchHH
Q psy15127        440 VAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLD  519 (633)
Q Consensus       440 ~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~  519 (633)
                      +..+..|.|++....  ..+.........+.+++.+|.|++.|.|+|+|.|..|.|+++.... +.+....|..++..  
T Consensus        19 ~~~Vt~Y~~~~~~~~--~~~~~~~~~~~~t~~~~~~L~p~t~Y~frV~A~n~~G~g~~s~~~~-~~t~~~~~~~~~~~--   93 (232)
T 4go6_B           19 NVMVTHYFLPPDDAV--PSDDDLGTVPDYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISA-FKTCLPGFPGAPCA--   93 (232)
T ss_dssp             EEEECEEECCCC--------------------CEEECCTTCEEEEEEEEEETTEEEEECCCEE-EECCCTTSCCCCEE--
T ss_pred             CEEEEEEEEEeeCCC--CCcEEEEECCCccEEEeCCCCCCCEEEEEEEEEeCCCcccccccee-eeecCCCCCCCCee--
Confidence            567888988765432  2222222333457899999999999999999999999999887763 44433333333333  


Q ss_pred             HHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccc------eeeeeeccce
Q psy15127        520 EARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTA------VRITWEKYNM  593 (633)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~------~~~~w~~~~~  593 (633)
                                    .....+.+++.|+|.+|        ...+|.|++| .|+|+.........      ....|.....
T Consensus        94 --------------~~~~~~~~sv~l~W~~P--------~~~~G~i~~Y-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (232)
T 4go6_B           94 --------------IKISKSPDGAHLTWEPP--------SVTSGKIIEY-SVYLAIQSSQAGGELKSSTPAQLAFMRVYC  150 (232)
T ss_dssp             --------------EEEEEETTEEEEEEECC--------SCCSSCCCEE-EEEEEEC-------------CCEEEEEEEE
T ss_pred             --------------eEEecCCCEEEEEEeCC--------CCCCCceeeE-EEEEEECCCCCcceeeeccCCceeeEEEEe
Confidence                          34556789999999965        5668899999 99998765543110      0112332211


Q ss_pred             eE---eecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        594 AT---VMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       594 ~~---~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      ..   .........+.+.+|.+++.|.|+|+|.|.+|.|++|+
T Consensus       151 ~~~~~~~~~~~~l~~~~~~L~~~t~Y~frV~A~N~~G~Gp~S~  193 (232)
T 4go6_B          151 GPSPSCLVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQ  193 (232)
T ss_dssp             ESSSEEEEEHHHHTTBCBEESSSEEEEEEEEEECSSCBCCCEE
T ss_pred             ccCceEEEEccccEEeeecCccCCceEEEEEEECCCcCCCCcc
Confidence            10   11112233445678999999999999999999999874

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.74  E-value=4.4e-17  Score=149.53  Aligned_cols=148  Identities=24%  Similarity=0.302  Sum_probs=116.6

Q ss_pred             cccCCCCCCCCCC-ccccccceeeEEEEecccCC---CCCceEEeeCceEEEcCCCC--CCeEEEEEEe-----------
Q psy15127          5 LDTNHAHPMSSPR-AEIEPATRTNRVSISGDPGF---DSRRSRSIFGSVLGARGALS--DDQWKLIAKE-----------   67 (633)
Q Consensus         5 ~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~L~i~~v~~--~G~Y~C~a~~-----------   67 (633)
                      +.+.|....+.|. +.|+|       ..++.+..   +.++.....+++|.|.+++.  +|.|+|.+.+           
T Consensus        26 v~L~C~~~~~~p~~~~v~W-------~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~   98 (201)
T 3s97_C           26 MVLLCDPPYHFPDDLSYRW-------LLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKF   98 (201)
T ss_dssp             EEECCCCCSEESSCCEEEE-------EESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEEEECCC
T ss_pred             EEEeccccccCCCceEEEE-------EECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcchhhcc
Confidence            3344443445565 67774       44555542   33444445578899999998  9999999998           


Q ss_pred             -----------cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCe
Q psy15127         68 -----------ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEG  136 (633)
Q Consensus        68 -----------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G  136 (633)
                                 ...+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.........++.|.|.+++.+|+|
T Consensus        99 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G  178 (201)
T 3s97_C           99 IPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEG  178 (201)
T ss_dssp             EEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEETTTTEEEECSCCGGGCE
T ss_pred             cceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceeecCCCCEEEEccCChhhCE
Confidence                       013566666667888999999999999999999999999999988776666666789999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEEe
Q psy15127        137 LYICDVENLVGSISLRASLTVHL  159 (633)
Q Consensus       137 ~Y~C~~~n~~g~~s~~~~l~V~~  159 (633)
                      .|+|.|.|..|..+..+.|.|.+
T Consensus       179 ~Y~C~a~n~~g~~~~~~~l~V~a  201 (201)
T 3s97_C          179 IYECEAENIRGKDKHQARIYVQA  201 (201)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEEecCCceeeeEEEEEeC
Confidence            99999999999999999888863

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.74  E-value=5.6e-18  Score=156.94  Aligned_cols=129  Identities=17%  Similarity=0.169  Sum_probs=93.8

Q ss_pred             eeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC--CccC-------------CCCCeEEc---ccceEEEccCCCCC
Q psy15127         73 FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD--DGKM-------------PTGRAKIL---DDRSLQIENVGPQD  134 (633)
Q Consensus        73 ~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~--~~~i-------------~~~~~~~~---~~~~L~i~~v~~~d  134 (633)
                      .+...| .+.+.+|++++|.|.+.  +.+.+.|+|+  +..+             ..+++...   .+.+|.|.+++.+|
T Consensus         3 ~v~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   79 (211)
T 3tv3_L            3 ALTQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDD   79 (211)
T ss_dssp             CCBCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGG
T ss_pred             eEEeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhH
Confidence            344445 88899999999999998  7889999994  2222             11233322   23579999999999


Q ss_pred             CeEEEEEEEeCCc--eEEEEEEEEEEe---eccccccCCCceEEecCCcEEEEEeCCCCC-CCCeEEEEECCEEec
Q psy15127        135 EGLYICDVENLVG--SISLRASLTVHL---LRDDFRAEPKDTRVASGETALLECGPPKGQ-PEPTLHWKKNGQFID  204 (633)
Q Consensus       135 ~G~Y~C~~~n~~g--~~s~~~~l~V~~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~-p~~~i~W~~~~~~~~  204 (633)
                      +|.|+|.+.+..+  .....+.|.|..   .+|.+...+....+..|+.+.|.|.+.... |.+.+.|+++|..+.
T Consensus        80 ~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~  155 (211)
T 3tv3_L           80 EAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVK  155 (211)
T ss_dssp             CEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             CEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecC
Confidence            9999999999887  355667788873   125555555554455799999999953323 357999999988775

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.73  E-value=2.5e-17  Score=156.83  Aligned_cols=126  Identities=17%  Similarity=0.161  Sum_probs=91.0

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCCe-----EEEEeCCccCCC---------C-------CeEE------cccceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLPT-----ILWRRDDGKMPT---------G-------RAKI------LDDRSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p~-----i~W~~~~~~i~~---------~-------~~~~------~~~~~L~i~  128 (633)
                      ..|..+.+.+|++++|.|.+.+.|.+.     |.|+|++.....         .       +...      ..+.+|.|.
T Consensus         8 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~   87 (248)
T 3pv7_A            8 MAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLP   87 (248)
T ss_dssp             STTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEES
T ss_pred             eCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeC
Confidence            456677899999999999998887765     999997543211         0       1000      012459999


Q ss_pred             cCCCCCCeEEEEEEEeCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCC-eEEEEECCEEe
Q psy15127        129 NVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFI  203 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~~~~~  203 (633)
                      +++.+|+|.|+|.+.+..+.....+.|.|..+ |.+...+. ..+..|+.+.|.|.+..+.|.+ .|.|+++|..+
T Consensus        88 ~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~-P~v~~~~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l  161 (248)
T 3pv7_A           88 GIQLEEAGEYRCEVVVTPLKAQGTVQLEVVAS-PASRLLLD-QVGMKENEDKYMCESSGFYPEAINITWEKQTQKF  161 (248)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEEBC-CEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSS
T ss_pred             CCCHHHCeEEEEEEEeCCccceeEEEEEEecC-CceEEecC-CccccCCCcEEEEEEccEECCCeEEEEEECCccC
Confidence            99999999999999999888888899999986 66665554 3345677888999954338888 99999998644

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.73  E-value=1.6e-17  Score=159.45  Aligned_cols=251  Identities=13%  Similarity=0.141  Sum_probs=102.8

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccCCCe-EEEEeC--CccC-CCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEE
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDPLPT-ILWRRD--DGKM-PTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSIS  150 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p~p~-i~W~~~--~~~i-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s  150 (633)
                      ...|+...+.+|+++.|.|.+. .+.|. +.|.-.  ...+ ..+.    ....|.|.+++.+  |.|+|.+.......+
T Consensus         3 ~v~P~~~~V~~G~sv~l~Cs~~-c~~p~~~~~~t~l~~~~~~~~g~----~~~~~~l~~v~~~--~~y~C~~~~~~~~~~   75 (291)
T 1mq8_A            3 SVSPSKVILPRGGSVLVTCSTS-CDQPKLLGIETPLPKKELLLPGN----NRKVYELSNVQED--SQPMCYSNCPDGQST   75 (291)
T ss_dssp             EEECSEEEECTTCEEEEEEEEC-CSSCSEEEEECSSCCCCCCCSCS----SEEEEEEESCCSC--CCCEEEEECSSCEEE
T ss_pred             EEeCCccEEcCCCeEEEEEeCC-CCCCccceEEecCCCcccccCCC----ceEEEEEEecccC--CeEEEEEEcCCccEE
Confidence            4567788999999999999996 45554 888642  1111 1111    1125788888853  469999975444577


Q ss_pred             EEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCC--eEEEEECCEEeccCCCeeEEeccceeee----EEEe
Q psy15127        151 LRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP--TLHWKKNGQFIDLESSKSLDLSRRTLGW----LRVR  224 (633)
Q Consensus       151 ~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  224 (633)
                      +.+.|.|..+|..+.+.+....+.+|+.++|.|.+..+.|..  .|+|+|+++.+...... .......+.+    ....
T Consensus        76 ~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~-~~~~~~~l~~~~~~~D~g  154 (291)
T 1mq8_A           76 AKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV-GEPAEVTTTVLVRRDHHG  154 (291)
T ss_dssp             EECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECC-BTTEEEEEECCCSSSCSS
T ss_pred             EEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCC-CCCceEEEEeeeeeccCC
Confidence            888999998855566666656688999999999977777765  69999999877533210 0000011111    1112


Q ss_pred             eeEEEEeecCCCC----------CCccc-cccc--c-e----eEEecCCceEEEEEEEeeecCC---eeEEEECCEEEEe
Q psy15127        225 PLYWNVARPRANL----------NPRYI-GRKM--A-S----LLIWNHPRVNRLSCFAEGSPLP---SVFWTQEGSQVLM  283 (633)
Q Consensus       225 g~y~C~a~~~~~~----------~p~~~-~~~~--~-~----~~~~~~g~~~~l~C~~~g~p~~---~v~W~~~g~~~~~  283 (633)
                      +.|+|.|.+..+.          .+... +.-.  . .    ...+.+|+.++|.|.+.|++++   .+.|+++|+.+..
T Consensus       155 ~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~  234 (291)
T 1mq8_A          155 ANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP  234 (291)
T ss_dssp             CEEEEEEEEECGGGTSCEEEECCCCEECBC--------------------------------------------------
T ss_pred             ceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCc
Confidence            5999999986441          10000 0000  0 0    0135689999999999998665   6999999987742


Q ss_pred             ccCCccceEEEccCceEEEcCC---CCCC--CeEEEEEEEeCCceeEEEEEEEEEecccCCCceEE
Q psy15127        284 FPGNAYGHLHVTQEGTLRIQGV---QKED--AGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFT  344 (633)
Q Consensus       284 ~~~~~~~~~~~~~~~~l~i~~~---~~~d--~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~p~~~  344 (633)
                      .       . ......+.+...   ..++  .+.|+|.|.+.....+....|.|.+   .|.|.++
T Consensus       235 ~-------~-~~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~---~~~~~~~  289 (291)
T 1mq8_A          235 T-------V-TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS---FPAPNVI  289 (291)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             e-------e-eecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEc---CCCccEE
Confidence            1       0 111223444333   2433  5677788877544455666666653   4555443

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.73  E-value=1.9e-17  Score=152.06  Aligned_cols=129  Identities=20%  Similarity=0.259  Sum_probs=92.2

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCe---EE--cccceEEEccCCCCCCeEEEEEEE
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRA---KI--LDDRSLQIENVGPQDEGLYICDVE  143 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~---~~--~~~~~L~i~~v~~~d~G~Y~C~~~  143 (633)
                      ..+|.|...|. ..+.+|++++|.|.+. .+.+.+.|+|+|..+.....   ..  ..++.|.|.+++.+|+|.|+|.+.
T Consensus         6 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~   83 (201)
T 1nkr_A            6 HRKPSLLAHPG-PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGS   83 (201)
T ss_dssp             -CCCEEEEESC-SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCeEEEEcC-CccCCCCcEEEEEecc-CCCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEe
Confidence            45788887776 6789999999999997 46789999999987642111   01  134689999999999999999998


Q ss_pred             eCC-----ceEEEEEEEEEEee--ccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEE
Q psy15127        144 NLV-----GSISLRASLTVHLL--RDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQF  202 (633)
Q Consensus       144 n~~-----g~~s~~~~l~V~~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~  202 (633)
                      +..     ...+..+.|.|...  +|.+...+. ..+.+|+.++|.|.+ .+ +.+.+.|+|+|..
T Consensus        84 ~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~  146 (201)
T 1nkr_A           84 VTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSS-RS-SYDMYHLSREGEA  146 (201)
T ss_dssp             BTTBTTCCCCCCCCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEE-SS-CCSEEEEEETTCS
T ss_pred             cCCCCccccCCCCCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeC-CC-CCceEEEEECCcc
Confidence            642     12356677777753  244444443 467788888888883 43 4567888877653

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.73  E-value=8.8e-17  Score=149.19  Aligned_cols=124  Identities=27%  Similarity=0.401  Sum_probs=86.9

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEecc-------CCCeEEEEeCCcc------C------------CCCCeEEcc-----cc
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGD-------PLPTILWRRDDGK------M------------PTGRAKILD-----DR  123 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~-------p~p~i~W~~~~~~------i------------~~~~~~~~~-----~~  123 (633)
                      .+..|..+.+.+|++++|.|.+.+.       +.+.+.|+|++..      +            ..++.....     +.
T Consensus         3 ~~~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   82 (214)
T 2zg1_A            3 ELQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNC   82 (214)
T ss_dssp             EEECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBC
T ss_pred             eeeCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeE
Confidence            4566788999999999999999754       4678999998652      1            123444432     34


Q ss_pred             eEEEccCCCCCCeEEEEEEEeCCce-E---EEEEEEEEEeec--cccccCCCceEEecCCcEEEEEeCCCC---CCCCeE
Q psy15127        124 SLQIENVGPQDEGLYICDVENLVGS-I---SLRASLTVHLLR--DDFRAEPKDTRVASGETALLECGPPKG---QPEPTL  194 (633)
Q Consensus       124 ~L~i~~v~~~d~G~Y~C~~~n~~g~-~---s~~~~l~V~~~~--p~~~~~~~~~~~~~g~~~~l~C~~~~~---~p~~~i  194 (633)
                      +|.|.+++.+|+|.|.|.+.+..+. .   +..+.|.|..++  |.+.. +.  .+.+|+.++|.|.+...   .|.+.+
T Consensus        83 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~--~~~~G~~v~L~C~~~~~~~~~p~p~v  159 (214)
T 2zg1_A           83 SLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-LE--PLESGRPTRLSCSLPGSCEAGPPLTF  159 (214)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---C--CCCTTCCEEEEEECTTCCSCSSCCEE
T ss_pred             EEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec-Cc--cccCCCeEEEEEEeccCCCCCCCceE
Confidence            7999999999999999999987633 2   246778887752  33322 22  25688999999984322   366777


Q ss_pred             EEEECC
Q psy15127        195 HWKKNG  200 (633)
Q Consensus       195 ~W~~~~  200 (633)
                      .|++++
T Consensus       160 ~W~~~~  165 (214)
T 2zg1_A          160 SWTGNA  165 (214)
T ss_dssp             EEESST
T ss_pred             EEeCCC
Confidence            777765

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.73  E-value=1.7e-17  Score=161.91  Aligned_cols=184  Identities=16%  Similarity=0.139  Sum_probs=120.7

Q ss_pred             ceEEEcCCCC--CCeEEEEEEe-------------cCc----CCeeeeCCCc--eEEEcCCeEEEEEEEeccCCCeEEEE
Q psy15127         48 SVLGARGALS--DDQWKLIAKE-------------ALI----KPFPISEPSD--ATVLSGSVVEFVCRVGGDPLPTILWR  106 (633)
Q Consensus        48 ~~L~i~~v~~--~G~Y~C~a~~-------------v~~----~p~~~~~~~~--~~~~~G~~~~L~C~~~~~p~p~i~W~  106 (633)
                      ++|.|.+++.  +|.|+|.|.|             +..    .|.+...+..  +.+.+|+.+.|.|.+. .|.+.++|+
T Consensus        51 ~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~  129 (289)
T 3mjg_X           51 SVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLH  129 (289)
T ss_dssp             EEEEECSCCGGGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEE
T ss_pred             EEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEE
Confidence            5799999998  9999999987             111    1111111111  5688999999999998 678899999


Q ss_pred             eCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceE-EEEEEEEEEe-eccccccCCCceEEecCCcEEEEEe
Q psy15127        107 RDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSI-SLRASLTVHL-LRDDFRAEPKDTRVASGETALLECG  184 (633)
Q Consensus       107 ~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~-s~~~~l~V~~-~~p~~~~~~~~~~~~~g~~~~l~C~  184 (633)
                      +++........... ...+.    ...|+|.|+|.|.|..+.. +..+.|.|.. .+|.+...+....+.+|+.+.|.|.
T Consensus       130 ~~~~~~~~~~~~~~-~~~~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~  204 (289)
T 3mjg_X          130 EKKGDVALPVPYDH-QRGFS----GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCI  204 (289)
T ss_dssp             ESSCCSCCCCCEET-TTEEE----ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEE
T ss_pred             eCCCCCccceeecC-CcCee----eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEE
Confidence            87532222111111 11222    3679999999999877653 4445677765 2366666666778999999999999


Q ss_pred             CCCCCCCCeEEEEECCEEeccCCCeeEEe-------ccceeeeE----EEeeeEEEEeecCCCCC
Q psy15127        185 PPKGQPEPTLHWKKNGQFIDLESSKSLDL-------SRRTLGWL----RVRPLYWNVARPRANLN  238 (633)
Q Consensus       185 ~~~~~p~~~i~W~~~~~~~~~~~~~~~~~-------~~~~~~~~----~~~g~y~C~a~~~~~~~  238 (633)
                       +.+.|.+.+.|++++.............       ....|.+.    ...|.|+|.|.|..+..
T Consensus       205 -~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~  268 (289)
T 3mjg_X          205 -VIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDH  268 (289)
T ss_dssp             -EESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTE
T ss_pred             -ECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCc
Confidence             5789999999998765433211111111       01122221    12489999999998754

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.73  E-value=1.4e-17  Score=153.06  Aligned_cols=121  Identities=22%  Similarity=0.392  Sum_probs=88.2

Q ss_pred             ceEEEcCCeEEEEEEEe----ccCCCeEEEEeCCccCC-------------CCCeEE--cccceEEEccCCCCCCeEEEE
Q psy15127         80 DATVLSGSVVEFVCRVG----GDPLPTILWRRDDGKMP-------------TGRAKI--LDDRSLQIENVGPQDEGLYIC  140 (633)
Q Consensus        80 ~~~~~~G~~~~L~C~~~----~~p~p~i~W~~~~~~i~-------------~~~~~~--~~~~~L~i~~v~~~d~G~Y~C  140 (633)
                      .+.+.+|++++|.|.+.    +.|.+.+.|++++..+.             .++...  ..+..|.|.+++.+|+|.|+|
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C   82 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence            46789999999999985    34677899999988652             122222  234689999999999999999


Q ss_pred             EEEeCCceE-----EEEEEEEEEeeccccccCCCce--EEecCCcEEEEEeCCCCCCCCeEEEEECCEEec
Q psy15127        141 DVENLVGSI-----SLRASLTVHLLRDDFRAEPKDT--RVASGETALLECGPPKGQPEPTLHWKKNGQFID  204 (633)
Q Consensus       141 ~~~n~~g~~-----s~~~~l~V~~~~p~~~~~~~~~--~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~  204 (633)
                      .|.|..|..     ...+.|.|..+.+    .|...  ....|+.+.|.|.+..|.|.|.|.|+++|..+.
T Consensus        83 ~~~~~~g~~~~~~~~~~~~l~V~~~~~----~p~~~~~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~  149 (201)
T 1dr9_A           83 VVLKYEKDAFKREHLAEVTLSVKADFP----TPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELN  149 (201)
T ss_dssp             EEEECCTTSCEEEEEEEEEEEEECCCC----CCEEEEEECSSTTEEEEEEEEEEESSCEEEEEEESSCEEC
T ss_pred             EEEcCCCCccccccccEEEEEEcCCCC----CCceEeccCCCCCeEEEEEecCCccCCCEEEEEECCEECc
Confidence            999976542     4566677765421    11111  124588899999954688999999999887665

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.73  E-value=7.6e-17  Score=154.13  Aligned_cols=126  Identities=17%  Similarity=0.291  Sum_probs=94.6

Q ss_pred             CeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC--------------CCCCeEEc-----ccceEEEccC
Q psy15127         72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM--------------PTGRAKIL-----DDRSLQIENV  130 (633)
Q Consensus        72 p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i--------------~~~~~~~~-----~~~~L~i~~v  130 (633)
                      ..+...|..+.+.+|++++|.|.+.+.|.+.+.|+|..  ...              ..+++...     .+.+|.|.++
T Consensus         4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   83 (256)
T 3tf7_C            4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASV   83 (256)
T ss_dssp             CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSC
T ss_pred             cEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCC
Confidence            45667788899999999999999998899999999843  111              02233331     2347999999


Q ss_pred             CCCCCeEEEEEEEeCCce----EEEEEEEEEEe-------------------eccccccCCCceEEecCCcEEEEEeCCC
Q psy15127        131 GPQDEGLYICDVENLVGS----ISLRASLTVHL-------------------LRDDFRAEPKDTRVASGETALLECGPPK  187 (633)
Q Consensus       131 ~~~d~G~Y~C~~~n~~g~----~s~~~~l~V~~-------------------~~p~~~~~~~~~~~~~g~~~~l~C~~~~  187 (633)
                      +.+|+|.|.|.+.+..+.    ....+.|.|..                   .++.+...|....+.+|+.++|.|.+ .
T Consensus        84 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~-~  162 (256)
T 3tf7_C           84 HRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQ-T  162 (256)
T ss_dssp             CGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEE-C
T ss_pred             CcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEc-C
Confidence            999999999999987542    23345677775                   23567777888888899999999995 4


Q ss_pred             CCCCCeEEEEEC
Q psy15127        188 GQPEPTLHWKKN  199 (633)
Q Consensus       188 ~~p~~~i~W~~~  199 (633)
                      +. .+.+.|+|.
T Consensus       163 ~~-~~~v~W~k~  173 (256)
T 3tf7_C          163 NS-HNYMYWYRQ  173 (256)
T ss_dssp             SC-CSEEEEEEE
T ss_pred             CC-ceEEEEEEE
Confidence            54 679999984

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.73  E-value=2.4e-16  Score=142.53  Aligned_cols=127  Identities=18%  Similarity=0.311  Sum_probs=98.7

Q ss_pred             CeeeeCCCc-eEEEcCCeEEEEEEEeccCCC--eEEEEeCCccCCCCCeE-EcccceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127         72 PFPISEPSD-ATVLSGSVVEFVCRVGGDPLP--TILWRRDDGKMPTGRAK-ILDDRSLQIENVGPQDEGLYICDVENLVG  147 (633)
Q Consensus        72 p~~~~~~~~-~~~~~G~~~~L~C~~~~~p~p--~i~W~~~~~~i~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g  147 (633)
                      +.....+.. +.+..|++++|.|.+ +.|.|  .|+|++.+..+  ++.. ......|.|.+++.+|+|.|.|.|.|..+
T Consensus         7 ~~~V~pp~~~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l--~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~   83 (210)
T 1gsm_A            7 PLQVEPPEPVVAVALGASRQLTCRL-ACADRGASVQWRGLDTSL--GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGR   83 (210)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT--CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CEEEeCCCCceEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc--CcEEecCCccEEEECccCcccCceEEEEEEeCCC
Confidence            343444433 589999999999999 88888  99999976665  3322 23356899999999999999999999988


Q ss_pred             eEEEEEEEEEEeecccc-ccCCCceEEecCCcEEEEEeCCCCCCC----CeEEEEECCEEecc
Q psy15127        148 SISLRASLTVHLLRDDF-RAEPKDTRVASGETALLECGPPKGQPE----PTLHWKKNGQFIDL  205 (633)
Q Consensus       148 ~~s~~~~l~V~~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~~p~----~~i~W~~~~~~~~~  205 (633)
                      ..+..+.|+|..+ |.. .+.+.  ....|+.+ |.|.+....|.    ++|.|+|++..+..
T Consensus        84 ~~~~~~~ltV~~~-P~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~  142 (210)
T 1gsm_A           84 TFQHTVQLLVYAF-PNQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEG  142 (210)
T ss_dssp             EEEEEEEEEEEBC-CSEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTT
T ss_pred             ceEEEEEEEEEec-CCCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEccc
Confidence            8889999999998 543 33332  56678888 99995444574    49999999998853

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.73  E-value=6.1e-18  Score=155.33  Aligned_cols=56  Identities=16%  Similarity=0.316  Sum_probs=46.5

Q ss_pred             EEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEe
Q psy15127         83 VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus        83 ~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                      +.+|++++|.|.+   |.+.|+|+|+|..+...   ...+++|.|.+++.+|+|.|+|.+.+
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~---~~~~~~L~i~~v~~~DsG~Y~C~~~~   70 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL---TEDKKKWNLGSNAKDPRGMYQCKGSQ   70 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEE---ESSCCCEEEEEGGGCCEEEEEEESSS
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCC---CCCCCeEEeCCCCcCCCEEEEEEecC
Confidence            3689999999988   78899999999877432   12456899999999999999999754

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.73  E-value=1.5e-17  Score=155.55  Aligned_cols=125  Identities=21%  Similarity=0.367  Sum_probs=86.9

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCC---eEEEEeCCccCC-----------------CCCeEE----------cccceE
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLP---TILWRRDDGKMP-----------------TGRAKI----------LDDRSL  125 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p---~i~W~~~~~~i~-----------------~~~~~~----------~~~~~L  125 (633)
                      ..|+.+.+..|++++|.|.+.+.+.+   .|+|+|++..+.                 .++...          ..+.+|
T Consensus         6 ~vp~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL   85 (225)
T 4fmk_A            6 RVLPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATL   85 (225)
T ss_dssp             ECCSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCE
T ss_pred             EeCCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEE
Confidence            44667889999999999999877665   389999875331                 111111          123579


Q ss_pred             EEccCCCCCCeEEEEEEEeCCceE-EEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCE
Q psy15127        126 QIENVGPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ  201 (633)
Q Consensus       126 ~i~~v~~~d~G~Y~C~~~n~~g~~-s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~  201 (633)
                      .|.+++.+|+|.|+|.|.+..+.. .....+.+..+ |.....+.......++.+.+.|.+..+.|++.+.|++++.
T Consensus        86 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~  161 (225)
T 4fmk_A           86 AFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQ-PENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLG  161 (225)
T ss_dssp             EECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBC-CEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSC
T ss_pred             EEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecC-CceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCc
Confidence            999999999999999999887764 44444555554 5444444445556677777777756677777888877654

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.73  E-value=4.2e-18  Score=159.20  Aligned_cols=175  Identities=19%  Similarity=0.323  Sum_probs=119.5

Q ss_pred             CceEEEcCCeEEEEEEEeccCC-----CeEEEEeCCccC--------------CCCCeEEcc------cceEEEccCCCC
Q psy15127         79 SDATVLSGSVVEFVCRVGGDPL-----PTILWRRDDGKM--------------PTGRAKILD------DRSLQIENVGPQ  133 (633)
Q Consensus        79 ~~~~~~~G~~~~L~C~~~~~p~-----p~i~W~~~~~~i--------------~~~~~~~~~------~~~L~i~~v~~~  133 (633)
                      ..+.+.+|++++|.|.+.+.+.     +.+.|++++...              ..++.....      +..|.|.+++.+
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~   82 (222)
T 4i0k_A            3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT   82 (222)
T ss_dssp             CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGG
T ss_pred             CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccc
Confidence            3566889999999999987654     689999987543              123333333      568999999999


Q ss_pred             CCeEEEEEEEeCCceEEEEEEEEEEeec--cccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEEC-CEEeccCCCee
Q psy15127        134 DEGLYICDVENLVGSISLRASLTVHLLR--DDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKN-GQFIDLESSKS  210 (633)
Q Consensus       134 d~G~Y~C~~~n~~g~~s~~~~l~V~~~~--p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~-~~~~~~~~~~~  210 (633)
                      |+|.|+|.+.+. +..+..+.|.|..++  |.+...+ ...+.+|+.+.|.|.+..+.|.+.+.|+++ +..+.....  
T Consensus        83 D~G~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~--  158 (222)
T 4i0k_A           83 DEGSYTCFVSIQ-DFDSAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVT--  158 (222)
T ss_dssp             GCSCEEEEEEEC-CCCCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEE--
T ss_pred             cCEEEEEEEEeC-CCceEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcc--
Confidence            999999999985 344555666666542  3333333 346778999999999547888899999873 332210000  


Q ss_pred             EEeccceeeeEEEeeeEEEEeecCCCCCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccc
Q psy15127        211 LDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYG  290 (633)
Q Consensus       211 ~~~~~~~~~~~~~~g~y~C~a~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~  290 (633)
                                                                                   .                  
T Consensus       159 -------------------------------------------------------------~------------------  159 (222)
T 4i0k_A          159 -------------------------------------------------------------T------------------  159 (222)
T ss_dssp             -------------------------------------------------------------E------------------
T ss_pred             -------------------------------------------------------------e------------------
Confidence                                                                         0                  


Q ss_pred             eEEEccCc---eEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEecc
Q psy15127        291 HLHVTQEG---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFC  336 (633)
Q Consensus       291 ~~~~~~~~---~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~  336 (633)
                      ......++   .|.|.++..+|.|.|+|.|.|..|.....+.|.|.+.+
T Consensus       160 ~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  208 (222)
T 4i0k_A          160 SQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQP  208 (222)
T ss_dssp             EEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC--
T ss_pred             eEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCc
Confidence            00001111   36788889999999999999999999999999887543

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.72  E-value=4.7e-17  Score=155.68  Aligned_cols=122  Identities=19%  Similarity=0.273  Sum_probs=89.5

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCC--ccC-----------------CCCCeEEcc-----cceEEEcc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDD--GKM-----------------PTGRAKILD-----DRSLQIEN  129 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~--~~i-----------------~~~~~~~~~-----~~~L~i~~  129 (633)
                      .+|....+.+|++++|.|.+.+.|  .+.|.|+|++  ..+                 ..+++....     ..+|+|.+
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   84 (257)
T 1f3r_B            5 LESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNS   84 (257)
T ss_dssp             EEECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEES
T ss_pred             ECCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECC
Confidence            445567899999999999999875  6789999962  211                 123444432     24899999


Q ss_pred             CCCCCCeEEEEEEEeCCc-------e--EEEEEEEEEEeec--------------cccccCCCceEEecCCcEEEEEeCC
Q psy15127        130 VGPQDEGLYICDVENLVG-------S--ISLRASLTVHLLR--------------DDFRAEPKDTRVASGETALLECGPP  186 (633)
Q Consensus       130 v~~~d~G~Y~C~~~n~~g-------~--~s~~~~l~V~~~~--------------p~~~~~~~~~~~~~g~~~~l~C~~~  186 (633)
                      ++.+|+|.|.|.|.|..|       .  ....+.|.|...+              +.+...+....+.+|++++|.|. .
T Consensus        85 v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~-~  163 (257)
T 1f3r_B           85 LQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCK-G  163 (257)
T ss_dssp             CCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEE-C
T ss_pred             CCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEE-E
Confidence            999999999999998853       1  2234577777641              23444566667889999999999 5


Q ss_pred             CCCCCCeEEEEE
Q psy15127        187 KGQPEPTLHWKK  198 (633)
Q Consensus       187 ~~~p~~~i~W~~  198 (633)
                      .+.|.+.+.|+|
T Consensus       164 ~~~~~~~v~W~k  175 (257)
T 1f3r_B          164 SQNINNYLAWYQ  175 (257)
T ss_dssp             SSCCBTCEEEEE
T ss_pred             CCcCCCcEEEEE
Confidence            777778999998

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.72  E-value=5.5e-17  Score=154.29  Aligned_cols=122  Identities=20%  Similarity=0.342  Sum_probs=90.7

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCCc--cC------------------CCCCeEEcc-----cceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDDG--KM------------------PTGRAKILD-----DRSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~~--~i------------------~~~~~~~~~-----~~~L~i~  128 (633)
                      .+|..+.+.+|++++|.|.+.+.|  .+.|.|+|+..  .+                  ..++.....     ..+|.|.
T Consensus         7 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   86 (247)
T 2ghw_B            7 VQSGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMN   86 (247)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             EecCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEEC
Confidence            344568899999999999999876  57899998431  10                  123444332     2479999


Q ss_pred             cCCCCCCeEEEEEEEeCCce--EEEEEEEEEEee--------------ccccccCCCceEEecCCcEEEEEeCCCCCCCC
Q psy15127        129 NVGPQDEGLYICDVENLVGS--ISLRASLTVHLL--------------RDDFRAEPKDTRVASGETALLECGPPKGQPEP  192 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~n~~g~--~s~~~~l~V~~~--------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~  192 (633)
                      +++.+|+|.|+|.|.|..+.  ....+.|.|...              ++.+...+....+.+|++++|.|. ..+.|.+
T Consensus        87 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~-~~~~~~~  165 (247)
T 2ghw_B           87 SLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCR-ASQSVRS  165 (247)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEE-ESSCCTT
T ss_pred             cCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEE-eCCCccc
Confidence            99999999999999987332  234457777753              233455666778899999999999 5777888


Q ss_pred             eEEEEE
Q psy15127        193 TLHWKK  198 (633)
Q Consensus       193 ~i~W~~  198 (633)
                      .+.|+|
T Consensus       166 ~v~W~k  171 (247)
T 2ghw_B          166 NLAWYQ  171 (247)
T ss_dssp             CEEEEE
T ss_pred             eEEEEE
Confidence            999998

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.72  E-value=1.3e-16  Score=152.13  Aligned_cols=127  Identities=20%  Similarity=0.279  Sum_probs=91.3

Q ss_pred             CeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccC---------------CCCCeEEcc---cceEEEccCCCC
Q psy15127         72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM---------------PTGRAKILD---DRSLQIENVGPQ  133 (633)
Q Consensus        72 p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i---------------~~~~~~~~~---~~~L~i~~v~~~  133 (633)
                      +.+...|..+.+.+|++++|.|.+.+.|.+.+.|+|+....               ..+++....   +.+|.|.+++.+
T Consensus         5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   84 (250)
T 3esu_F            5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQE   84 (250)
T ss_dssp             CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChh
Confidence            45667788889999999999999999999999999953210               122332222   237999999999


Q ss_pred             CCeEEEEEEEeCCce-EEEEEEEEEEee------------------ccccccCCCceEEecCCcEEEEEeCCCCCC--CC
Q psy15127        134 DEGLYICDVENLVGS-ISLRASLTVHLL------------------RDDFRAEPKDTRVASGETALLECGPPKGQP--EP  192 (633)
Q Consensus       134 d~G~Y~C~~~n~~g~-~s~~~~l~V~~~------------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~  192 (633)
                      |+|.|.|.+.|..+. ......|.|..+                  ++.+...+....+.+|+.++|.|. ..+.+  .+
T Consensus        85 D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~-~~~~~~~~~  163 (250)
T 3esu_F           85 DIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCK-DSGYAFSSS  163 (250)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEE-CCSTTGGGS
T ss_pred             hCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEE-ecCCcccCC
Confidence            999999999987554 234446677653                  133444556677889999999999 56655  67


Q ss_pred             eEEEEEC
Q psy15127        193 TLHWKKN  199 (633)
Q Consensus       193 ~i~W~~~  199 (633)
                      .+.|+|+
T Consensus       164 ~v~W~k~  170 (250)
T 3esu_F          164 WMNWVKQ  170 (250)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999986

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.72  E-value=8.7e-17  Score=148.95  Aligned_cols=144  Identities=18%  Similarity=0.207  Sum_probs=110.2

Q ss_pred             CCCCCCCCccccccceeeEEEEecccCCCCCceEEeeC---ceEEEcCCCC--CCeEEEEEEe----------c--Cc--
Q psy15127         10 AHPMSSPRAEIEPATRTNRVSISGDPGFDSRRSRSIFG---SVLGARGALS--DDQWKLIAKE----------A--LI--   70 (633)
Q Consensus        10 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~L~i~~v~~--~G~Y~C~a~~----------v--~~--   70 (633)
                      .....+|.+.|+|       ..+|.+...+.++.+...   ..|.|.+++.  +|.|+|.|.|          +  ..  
T Consensus        25 ~~~~~~p~~~i~W-------~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~~~~   97 (212)
T 2r15_A           25 FVTYYVEDLKVNW-------SHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYD   97 (212)
T ss_dssp             EBSSCCSSCEEEE-------EETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHH
T ss_pred             EEeccCCCceEEE-------EECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEeecc
Confidence            3333346777774       445666666667665443   3499999999  9999999988          1  10  


Q ss_pred             ------------------CCee-eeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcc-----cceEE
Q psy15127         71 ------------------KPFP-ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD-----DRSLQ  126 (633)
Q Consensus        71 ------------------~p~~-~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~-----~~~L~  126 (633)
                                        +|.+ ...|....+.+|+.+.|.|.+.+.|.|.+.|+|++..+..+......     ...|.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~  177 (212)
T 2r15_A           98 EAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFT  177 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTTEEEEE
T ss_pred             chhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCCEEEEE
Confidence                              3434 34466678999999999999999999999999999988754332222     13899


Q ss_pred             EccCCCCCCeEEEEEEEeCCceEEEEEEEEEEee
Q psy15127        127 IENVGPQDEGLYICDVENLVGSISLRASLTVHLL  160 (633)
Q Consensus       127 i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~  160 (633)
                      |.+++.+|+|.|+|.|.|..|..+..+.|.|..|
T Consensus       178 i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  211 (212)
T 2r15_A          178 INGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP  211 (212)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEcc
Confidence            9999999999999999999999999999988764

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.71  E-value=4.1e-17  Score=155.77  Aligned_cols=125  Identities=18%  Similarity=0.314  Sum_probs=92.2

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeC--CccC------------------CCCCeEEccc-----ceEE
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRD--DGKM------------------PTGRAKILDD-----RSLQ  126 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~--~~~i------------------~~~~~~~~~~-----~~L~  126 (633)
                      ++..|..+.+.+|++++|.|.+.+.+  .+.+.|+|.  +..+                  ..+++....+     .+|.
T Consensus         4 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   83 (253)
T 3uzq_A            4 LLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLH   83 (253)
T ss_dssp             CEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             eEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEE
Confidence            45677888999999999999998754  678999993  2111                  1134443322     2499


Q ss_pred             EccCCCCCCeEEEEEEEeCCceE-EEEEEEEEEee--------------ccccccCCCceEEecCCcEEEEEeCCCCCCC
Q psy15127        127 IENVGPQDEGLYICDVENLVGSI-SLRASLTVHLL--------------RDDFRAEPKDTRVASGETALLECGPPKGQPE  191 (633)
Q Consensus       127 i~~v~~~d~G~Y~C~~~n~~g~~-s~~~~l~V~~~--------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~  191 (633)
                      |.+++.+|+|.|.|.+.|..+.. ...+.|.|...              ++.+...|....+.+|++++|.|. ..+.+.
T Consensus        84 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~-~~~~~~  162 (253)
T 3uzq_A           84 LSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCR-ASENVD  162 (253)
T ss_dssp             ECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEE-ESSCCE
T ss_pred             eCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEE-ecCccc
Confidence            99999999999999999865543 35566777642              356666777788999999999999 466666


Q ss_pred             C----eEEEEEC
Q psy15127        192 P----TLHWKKN  199 (633)
Q Consensus       192 ~----~i~W~~~  199 (633)
                      +    .+.|+|+
T Consensus       163 ~~~~~~v~W~r~  174 (253)
T 3uzq_A          163 RYGNSFMHWYQQ  174 (253)
T ss_dssp             ETTEECEEEEEE
T ss_pred             cCCCcEEEEEEE
Confidence            5    8999984

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.71  E-value=3.7e-17  Score=151.55  Aligned_cols=131  Identities=21%  Similarity=0.234  Sum_probs=92.1

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccC---CCeEEEEeCC--ccC-------------CCCCeEEcc---cceEEEccCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDP---LPTILWRRDD--GKM-------------PTGRAKILD---DRSLQIENVGP  132 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p---~p~i~W~~~~--~~i-------------~~~~~~~~~---~~~L~i~~v~~  132 (633)
                      +.. |..+.+.+|++++|.|.+.+.|   .+.|.|+|++  ..+             ..+++....   ...|.|.+++.
T Consensus         4 v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   82 (212)
T 1q0x_L            4 VTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQT   82 (212)
T ss_dssp             EEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             EEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCc
Confidence            445 8888999999999999998877   4789999963  221             123433322   24899999999


Q ss_pred             CCCeEEEEEEEeCCce-EEEEEEEEEEe---eccccccCCCceEEecCCcEEEEEeCCCCCCCC-eEEEEECCEEecc
Q psy15127        133 QDEGLYICDVENLVGS-ISLRASLTVHL---LRDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFIDL  205 (633)
Q Consensus       133 ~d~G~Y~C~~~n~~g~-~s~~~~l~V~~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~~~~~~~  205 (633)
                      +|+|.|.|.+.|..+. ....+.|.|..   .+|.+...+....+..|+.+.|.|.+....|.+ .|.|+++|..+..
T Consensus        83 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~  160 (212)
T 1q0x_L           83 EDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTA  160 (212)
T ss_dssp             GGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             cCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCC
Confidence            9999999999987664 23445666642   225554433333345789999999954334544 8999999887653

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.71  E-value=1.1e-16  Score=152.77  Aligned_cols=122  Identities=18%  Similarity=0.333  Sum_probs=91.9

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCC--ccC------------------CCCCeEEcc-----cceEEE
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDD--GKM------------------PTGRAKILD-----DRSLQI  127 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~--~~i------------------~~~~~~~~~-----~~~L~i  127 (633)
                      +..|..+.+.+|++++|.|.+.+.|  .+.|.|+|++  ..+                  ..+++....     ..+|.|
T Consensus         4 l~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (256)
T 1nqb_A            4 LQQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQL   83 (256)
T ss_dssp             EEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEE
Confidence            3556778899999999999998775  5789999942  211                  023444432     247999


Q ss_pred             ccCCCCCCeEEEEEEEeCCce-----EEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCC-----eEEEE
Q psy15127        128 ENVGPQDEGLYICDVENLVGS-----ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP-----TLHWK  197 (633)
Q Consensus       128 ~~v~~~d~G~Y~C~~~n~~g~-----~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-----~i~W~  197 (633)
                      .+++.+|+|.|.|.+.|..|.     ....+.|.|... +.+...|....+.+|++++|.|. ..+.|.+     .+.|+
T Consensus        84 ~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~-~~v~~~p~~~~v~~G~~v~L~C~-~~~~~~~~~~~~~v~W~  161 (256)
T 1nqb_A           84 SSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSD-IELTQTPLSLPVSLGDQASISCR-SSQSIVHSNGNTYLEWY  161 (256)
T ss_dssp             CSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCC-CCEEEECSEEEECTTCCEEEEEE-ESSCCBCTTSCBCEEEE
T ss_pred             CcCChhhCEEEEEEEeeccCccceeEEcCceeeeeccc-ccEEecCcEEEEecCCcEEEEeE-ecCcccccccceEEEEE
Confidence            999999999999999988652     234567777765 66666777788899999999999 4665554     89999


Q ss_pred             E
Q psy15127        198 K  198 (633)
Q Consensus       198 ~  198 (633)
                      |
T Consensus       162 k  162 (256)
T 1nqb_A          162 L  162 (256)
T ss_dssp             E
T ss_pred             E
Confidence            8

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.71  E-value=1.8e-17  Score=153.83  Aligned_cols=133  Identities=18%  Similarity=0.213  Sum_probs=95.6

Q ss_pred             CeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCc--cC-------------CCCCeEEc---ccceEEEccCCCC
Q psy15127         72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG--KM-------------PTGRAKIL---DDRSLQIENVGPQ  133 (633)
Q Consensus        72 p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~--~i-------------~~~~~~~~---~~~~L~i~~v~~~  133 (633)
                      |.+...|..+.+.+|++++|.|.+.+.|.+.+.|+|++.  ..             ..+++...   .+..|.|.+++.+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESE   81 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcc
Confidence            456677888999999999999999988889999998431  11             12233332   2348999999999


Q ss_pred             CCeEEEEEEEeCCce-EEEEEEEEEEe--eccccccCCCceEEecCCcEEEEEeCCCCCC-CCeEEEEECCEEec
Q psy15127        134 DEGLYICDVENLVGS-ISLRASLTVHL--LRDDFRAEPKDTRVASGETALLECGPPKGQP-EPTLHWKKNGQFID  204 (633)
Q Consensus       134 d~G~Y~C~~~n~~g~-~s~~~~l~V~~--~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~i~W~~~~~~~~  204 (633)
                      |+|.|+|.|.+..+. ....+.|.|..  .+|.+...+....+..|+.+.|.|.+....| .+.+.|+++|..+.
T Consensus        82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~  156 (213)
T 3r06_A           82 DIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKR  156 (213)
T ss_dssp             GCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             cCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccC
Confidence            999999999887543 34445677732  1255555555555567889999999543343 34899999988775

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.71  E-value=5.5e-18  Score=168.25  Aligned_cols=189  Identities=16%  Similarity=0.112  Sum_probs=118.2

Q ss_pred             eEEEcCCCC--CCeEEEEEEe--------cC-------cCCee-eeCCCceEEEcCCeEEEEEEEecc-CCC---eEEEE
Q psy15127         49 VLGARGALS--DDQWKLIAKE--------AL-------IKPFP-ISEPSDATVLSGSVVEFVCRVGGD-PLP---TILWR  106 (633)
Q Consensus        49 ~L~i~~v~~--~G~Y~C~a~~--------v~-------~~p~~-~~~~~~~~~~~G~~~~L~C~~~~~-p~p---~i~W~  106 (633)
                      .|.|.+.+.  +|.|+|.|.|        +.       ..|.+ +..|....+.+|+.++|.|.+.+. |.+   .|+|+
T Consensus        73 ~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~  152 (323)
T 2wqr_A           73 ELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWS  152 (323)
T ss_dssp             EEEEEHHHHHTTCCEEEEEEETTEEEEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEE
T ss_pred             EEEEcHHHcCCCCcEEEEEEeCCCCcceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEE
Confidence            577777665  8999999998        11       13433 445555567889999999999875 556   89999


Q ss_pred             eCC-ccCCCCCeE--------EcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEE---eeccccccCCCceEEe
Q psy15127        107 RDD-GKMPTGRAK--------ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH---LLRDDFRAEPKDTRVA  174 (633)
Q Consensus       107 ~~~-~~i~~~~~~--------~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~---~~~p~~~~~~~~~~~~  174 (633)
                      |++ ..+......        ....+.|.|.+++.+|+|.|+|.|.|..+.......|.+.   ..+|.+.+.+......
T Consensus       153 k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~  232 (323)
T 2wqr_A          153 RASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPG  232 (323)
T ss_dssp             ETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEEECCCCTT
T ss_pred             ECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCCChHHh
Confidence            975 444322111        1123479999999999999999999986443222222211   1224443322222222


Q ss_pred             cCCcEEEEEeCCCCCCCC-eEEEEECCEEeccCCCe---eEEeccc------eeeeEEE----eeeEEEEeecCCCC
Q psy15127        175 SGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSK---SLDLSRR------TLGWLRV----RPLYWNVARPRANL  237 (633)
Q Consensus       175 ~g~~~~l~C~~~~~~p~~-~i~W~~~~~~~~~~~~~---~~~~~~~------~~~~~~~----~g~y~C~a~~~~~~  237 (633)
                      .|+.++|.|.+....|.+ .|.|+++|..+......   .....+.      .+.+...    .|.|+|.|.|.+..
T Consensus       233 ~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          233 SRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             CTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             cCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            399999999953335544 89999999987643111   0011111      1222111    37999999998764

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.71  E-value=1.9e-16  Score=151.56  Aligned_cols=127  Identities=22%  Similarity=0.325  Sum_probs=91.4

Q ss_pred             CeeeeCCCceEEEcCCeEEEEEEEecc--CCCeEEEEeCC--cc---C--------------CCCCeEEcc-----cceE
Q psy15127         72 PFPISEPSDATVLSGSVVEFVCRVGGD--PLPTILWRRDD--GK---M--------------PTGRAKILD-----DRSL  125 (633)
Q Consensus        72 p~~~~~~~~~~~~~G~~~~L~C~~~~~--p~p~i~W~~~~--~~---i--------------~~~~~~~~~-----~~~L  125 (633)
                      ...+..|....+.+|++++|.|.+.+.  +.+.+.|+|..  ..   +              ..+++....     ..+|
T Consensus         9 ~v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   88 (257)
T 3gkz_A            9 EVQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYL   88 (257)
T ss_dssp             CEEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEE
T ss_pred             cEEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEE
Confidence            344566777889999999999999874  47789999943  11   1              112333332     2369


Q ss_pred             EEccCCCCCCeEEEEEEEeC----CceEEEEEEEEEEee-------------ccccccCCCceEEecCCcEEEEEeCCCC
Q psy15127        126 QIENVGPQDEGLYICDVENL----VGSISLRASLTVHLL-------------RDDFRAEPKDTRVASGETALLECGPPKG  188 (633)
Q Consensus       126 ~i~~v~~~d~G~Y~C~~~n~----~g~~s~~~~l~V~~~-------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~  188 (633)
                      .|.+++.+|+|.|.|.+.|.    .......+.|.|..+             ++.+...+....+.+|++++|.|. ..+
T Consensus        89 ~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~-~~~  167 (257)
T 3gkz_A           89 QLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCS-ASS  167 (257)
T ss_dssp             EECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEE-ESS
T ss_pred             EECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEE-Ecc
Confidence            99999999999999999986    222344566777754             245666677788999999999999 466


Q ss_pred             CCCC-eEEEEEC
Q psy15127        189 QPEP-TLHWKKN  199 (633)
Q Consensus       189 ~p~~-~i~W~~~  199 (633)
                      .+.+ .+.|+|.
T Consensus       168 ~~~~~~v~W~k~  179 (257)
T 3gkz_A          168 SVSSSHLYWYQQ  179 (257)
T ss_dssp             CCCGGGEEEEEE
T ss_pred             CccceEEEEEEE
Confidence            6666 9999984

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.71  E-value=2.5e-16  Score=141.18  Aligned_cols=116  Identities=16%  Similarity=0.240  Sum_probs=77.0

Q ss_pred             CCceEEEcCCeEEEEEEEec-cCCCeEEEEeC-CccC-------------CC--CCeEE-cccceEEEccCCCCCCeEEE
Q psy15127         78 PSDATVLSGSVVEFVCRVGG-DPLPTILWRRD-DGKM-------------PT--GRAKI-LDDRSLQIENVGPQDEGLYI  139 (633)
Q Consensus        78 ~~~~~~~~G~~~~L~C~~~~-~p~p~i~W~~~-~~~i-------------~~--~~~~~-~~~~~L~i~~v~~~d~G~Y~  139 (633)
                      ...+.+.+|++++|.|.+.+ .+.+.|.|+|+ +..+             ..  +|..+ ..+++|.|.+++.+|+|.|+
T Consensus         6 ~~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~   85 (180)
T 2dru_A            6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYY   85 (180)
T ss_dssp             CCEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEE
T ss_pred             cceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEE
Confidence            34678999999999998854 34678999994 3221             11  34444 45678999999999999999


Q ss_pred             EEEEeCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCE
Q psy15127        140 CDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ  201 (633)
Q Consensus       140 C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~  201 (633)
                      |.+.+.. ..+..+.|.|..+.+.      ......+..+.|.|.+..+ |.+.|.|++++.
T Consensus        86 C~v~~~~-~~~~~~~L~V~~~~~~------P~i~~~~~~v~L~C~~~~g-p~p~i~W~~~~~  139 (180)
T 2dru_A           86 MRMLHET-EDQWKITMEVYEMVSK------PMIYWECSNATLTCEVLEG-TDVELKLYQGKE  139 (180)
T ss_dssp             EEEESSS-EEEEEEEEEEECCCCC------CEEEEEGGGTEEEEECSSC-TTCEEEEEETTE
T ss_pred             EEEEcCC-eEEEEEEEEEECCCCC------CEEEecCCCEEEEEEeCCC-CCCEEEEEECCe
Confidence            9998766 6677788888765111      1111233456666663234 555555555544

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.70  E-value=3.1e-17  Score=152.93  Aligned_cols=126  Identities=21%  Similarity=0.323  Sum_probs=90.6

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeC--CccCC------------------CCCeEEcc-----cceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRD--DGKMP------------------TGRAKILD-----DRSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~--~~~i~------------------~~~~~~~~-----~~~L~i~  128 (633)
                      .+|..+.+.+|++++|.|.+.+.+  .+.+.|+|+  +..+.                  .+++....     +.+|.|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (219)
T 1c1e_H            5 VQSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQIN   84 (219)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEEC
T ss_pred             eCCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEEC
Confidence            456778899999999999998765  678999997  33221                  23444332     3589999


Q ss_pred             cCCCCCCeEEEEEEEeCCc----eEEEEEEEEEEee---ccccccCCCceEEecCCcEEEEEeCCCC-CCCC-eEEEEEC
Q psy15127        129 NVGPQDEGLYICDVENLVG----SISLRASLTVHLL---RDDFRAEPKDTRVASGETALLECGPPKG-QPEP-TLHWKKN  199 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~n~~g----~~s~~~~l~V~~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~p~~-~i~W~~~  199 (633)
                      +++.+|+|.|+|.+.+..+    .....+.|.|...   +|.+...+....+.+|+.+.|.|.+ .+ .|.+ .|.|+++
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~-~g~~P~p~~v~W~~~  163 (219)
T 1c1e_H           85 NLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLV-KGYFPEPVTVTWNSG  163 (219)
T ss_dssp             SCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEE-EEEBSSCCEEEEGGG
T ss_pred             CCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEc-ccccCCCeEEEEEeC
Confidence            9999999999999998763    2234567777653   1333333323345689999999995 55 8888 9999988


Q ss_pred             CEE
Q psy15127        200 GQF  202 (633)
Q Consensus       200 ~~~  202 (633)
                      |..
T Consensus       164 g~~  166 (219)
T 1c1e_H          164 SLS  166 (219)
T ss_dssp             TBC
T ss_pred             Ccc
Confidence            764

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.70  E-value=1.6e-16  Score=141.12  Aligned_cols=78  Identities=23%  Similarity=0.311  Sum_probs=61.8

Q ss_pred             ceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCC-------------CCCeEEc-ccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         80 DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP-------------TGRAKIL-DDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        80 ~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~-------------~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      .+.+.+|++++|.|.+. .|.+.|.|+|++..+.             .++.... .+++|.|.+++.+|+|.|+|.+.|.
T Consensus         4 ~v~~~~G~~VtL~c~~~-~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~   82 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (171)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEcCCCEEEcCCCC-CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence            46789999999999985 4788999999886431             1233332 4579999999999999999999887


Q ss_pred             CceEEEEEEEEEEee
Q psy15127        146 VGSISLRASLTVHLL  160 (633)
Q Consensus       146 ~g~~s~~~~l~V~~~  160 (633)
                      .+  +..+.|.|..+
T Consensus        83 ~~--~~~~~L~V~~~   95 (171)
T 1ccz_A           83 TD--TMKFFLYVLEM   95 (171)
T ss_dssp             CS--CEEEEEEEECC
T ss_pred             CC--cEEEEEEEECc
Confidence            77  67778888765

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.70  E-value=2.8e-16  Score=150.19  Aligned_cols=123  Identities=17%  Similarity=0.342  Sum_probs=90.9

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCC--ccC------------------CCCCeEEcc-----cceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDD--GKM------------------PTGRAKILD-----DRSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~--~~i------------------~~~~~~~~~-----~~~L~i~  128 (633)
                      ..+....+.+|++++|.|.+.+.+  .+.+.|+|..  ..+                  ..+++....     ...|.|.
T Consensus         7 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   86 (256)
T 3umt_A            7 QQSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELR   86 (256)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             EccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEEC
Confidence            445567799999999999998765  6789999843  111                  113333332     2349999


Q ss_pred             cCCCCCCeEEEEEEEeC----CceEEEEEEEEEEee---------------ccccccCCCceEEecCCcEEEEEeCCCCC
Q psy15127        129 NVGPQDEGLYICDVENL----VGSISLRASLTVHLL---------------RDDFRAEPKDTRVASGETALLECGPPKGQ  189 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~n~----~g~~s~~~~l~V~~~---------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~~  189 (633)
                      +++.+|+|.|.|.+.+.    .+.....+.|.|...               ++.+...|....+.+|++++|.|. ..+.
T Consensus        87 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~-~~~~  165 (256)
T 3umt_A           87 SLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCR-ASQD  165 (256)
T ss_dssp             SCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEE-ESSC
T ss_pred             CCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEE-EecC
Confidence            99999999999999987    333455667777752               366667777788899999999999 5667


Q ss_pred             CCCeEEEEEC
Q psy15127        190 PEPTLHWKKN  199 (633)
Q Consensus       190 p~~~i~W~~~  199 (633)
                      |.+.+.|+|+
T Consensus       166 ~~~~v~W~k~  175 (256)
T 3umt_A          166 IGSNLNWLQQ  175 (256)
T ss_dssp             CTTCEEEEEE
T ss_pred             CCcEEEEEEE
Confidence            7779999884

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens}

Probab=99.70  E-value=1.5e-16  Score=155.69  Aligned_cols=219  Identities=15%  Similarity=0.133  Sum_probs=135.5

Q ss_pred             ccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCCCC---CC
Q psy15127        364 LRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGG---GV  440 (633)
Q Consensus       364 ~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~---~~  440 (633)
                      +.....|.++..|.| .|.+..+....+.           +.....+++|. +.+.. ...+|.|+|.|+...+.   -.
T Consensus        68 l~~~~~Y~~rV~A~n-~~~S~~s~~~~f~-----------~~~~~~~~pP~-v~~~~-~~~si~v~w~P~~~~~~~~~~~  133 (306)
T 3s98_A           68 LNVYEEIKLRIRAEK-ENTSSWYEVDSFT-----------PFRKAQIGPPE-VHLEA-EDKAIVIHISPGTKDSVMWALD  133 (306)
T ss_dssp             -CTTSCEEEEEEEEC-SSCEEEEECCCBC-----------HHHHCBCCCCE-EEEEE-CSSCEEEEEECC---CCCC---
T ss_pred             cCCCCcEEEEEEEEe-CCcCCCEeeeeEe-----------chhhCccCCCe-EEEEE-cCCEEEEEEECCCCCCcceecc
Confidence            456678899999999 6644322111111           01111234554 44443 44689999997654210   02


Q ss_pred             cceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEe--ccccCCCCCCCCceeecCCCCCCCcchH
Q psy15127        441 APVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAEN--SHGLGIPSPVSPITRTLGLNSLVPQHLL  518 (633)
Q Consensus       441 ~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n--~~G~g~~s~~~~~~~t~~~~p~~~~~~~  518 (633)
                      +.+.+|.|.|+..+....|.   .....+.++|.+|.|++.|.|+|+|.|  ..|.|++|... .+.|.++.|.++|..+
T Consensus       134 g~~l~Y~v~y~~~~~~~~~~---~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~~~g~g~~S~~~-~~~T~~~~p~~~P~~v  209 (306)
T 3s98_A          134 GLSFTYSLVIWKNSSGVEER---IENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVH-CIKTTVENELPPPENI  209 (306)
T ss_dssp             --CCEEEEEEEETTTCCCEE---EEEECTEEEECSCCTTCEEEEEEEEEEGGGTEECCCCCCE-EEECCSCCSSCCCEEE
T ss_pred             CCcEEEEEEEEECCCCCeEE---EecccceEEEccCCCCCeEEEEEEEEEccCCCCCCCCCcE-eeEecCCCcCCCCceE
Confidence            57899999999887655565   233467899999999999999999999  78999998876 4667666665555442


Q ss_pred             HHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCC-cccceeeeeecc-ceeEe
Q psy15127        519 DEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPT-ASTAVRITWEKY-NMATV  596 (633)
Q Consensus       519 ~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~-~~~~~~~~w~~~-~~~~~  596 (633)
                                     .+... .+++.|+|++|        .. +   .+| .+.|...-.- ...+....|.+. +... 
T Consensus       210 ---------------~~~~~-~~s~~l~W~~p--------~~-~---~~~-~v~~~~gy~~~~~~~~~~~W~~~~~c~~-  259 (306)
T 3s98_A          210 ---------------EVSVQ-NQNYVLKWDYT--------YA-N---MTF-QVQWLHAFLKRNPGNHLYKWKQIPDCEN-  259 (306)
T ss_dssp             ---------------EEEEE-TTEEEEEEECS--------SS-S---CEE-EEEEEEGGGGSCC----CCCEECGGGTT-
T ss_pred             ---------------EEEEe-cCEEEEEeCCC--------CC-c---EEE-EEEEehhhhhccccccccCceECCCcee-
Confidence                           55444 47899999954        11 1   234 4444321000 000112358754 2222 


Q ss_pred             ecCCccceEEeecc-ccceeEEEEEeccccccccccCC
Q psy15127        597 MNAATTTSYTVTHL-RKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       597 ~~~~~~~~~~i~~L-~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                         ...+.+.+.+| .+...|.|||+|.|..|.|.+|+
T Consensus       260 ---~~~~~c~~~~~~~~~~~Y~~RV~A~n~~~~s~~s~  294 (306)
T 3s98_A          260 ---VKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSE  294 (306)
T ss_dssp             ---BSSSEEEEEGGGSCSSEEEEEEEEECSSCBCCCCC
T ss_pred             ---CCCccccCchhhcccCCEEEEEEEccCCCcccccc
Confidence               24677888884 45559999999999999999885

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A

Probab=99.70  E-value=1.5e-16  Score=146.92  Aligned_cols=182  Identities=16%  Similarity=0.125  Sum_probs=125.8

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEe--eeeceEEE--ecCCCCCeEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHR--ITSTSITV--SDLKPDTSYMF  484 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~--~~~~~~~i--~~L~p~~~Y~~  484 (633)
                      +|++|.++.+......++.++|.++.+.   +. ...|.|.|+..+. ..|......  .....+.|  .+|.+++.|.|
T Consensus         3 pP~~P~nl~c~~~~~~~~~c~W~p~~~~---~~-~~~Y~l~y~~~~~-~~~~~c~~~~~~~~~~c~~~~~~l~~~~~Y~~   77 (210)
T 3n06_B            3 PPGKPEIFKCRSPNKETFTCWWRPGTDG---GL-PTNYSLTYHREGE-TLMHECPDYITGGPNSCHFGKQYTSMWRTYIM   77 (210)
T ss_dssp             CCCCCEEEEEEBSSSSCEEEEEECCSSS---CC-CSEEEEEEEETTC-CCCEECSCSSTTCTTEEEECGGGCCSSSCEEE
T ss_pred             CCCCCeEeEEEeCCCCeEEEEECCCCCC---CC-CceEEEEEEECCC-CccccCCCCCCCCCeEEEeCCCCcccceeEEE
Confidence            3677888888888899999999998843   23 4689999997653 345432111  12234555  57999999999


Q ss_pred             EEEEEeccccCCCCCCCCceeecCC-CCCCCcchHHHHHHHhCCceEEeeeeeecc----cceEEEEEEEecCCCccccc
Q psy15127        485 IVRAENSHGLGIPSPVSPITRTLGL-NSLVPQHLLDEARARLGTKVVNLRELIPTA----STAVRITWEVSWGSVPQHLL  559 (633)
Q Consensus       485 ~v~a~n~~G~g~~s~~~~~~~t~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~si~v~W~~p~~~~p~~~~  559 (633)
                      +|.|.|..|.+.. ... .+.+... .|.+|.++                .+....    .+++.|+|++|      ...
T Consensus        78 ~V~A~N~~G~~~s-~~~-~~~~~~~v~p~pP~~l----------------~~~~~~~~~~~~~l~l~W~~p------~~~  133 (210)
T 3n06_B           78 MVNATNQMGSSFS-DEL-YVDVTYIVQPDPPLEL----------------AVEVKQPEDRKPYLWIKWSPP------TLI  133 (210)
T ss_dssp             EEEEEETTEEEEC-CCE-EECGGGCBCCCCCEEE----------------EEEEECCSSSCCEEEEEEECC------TTC
T ss_pred             EEEEEcCCCCeeC-CcE-EEchhheEecCCCceE----------------EEEEecCcCCCceEEEEcCCC------CCc
Confidence            9999999999853 222 2333333 34444333                555443    58999999954      222


Q ss_pred             c-hhh-hhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccc-cccCC
Q psy15127        560 D-EAR-ARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVE-GARLD  633 (633)
Q Consensus       560 ~-~~~-~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~-g~~s~  633 (633)
                      . .+| .+.+| .|+|+..+...       |+..      .....++++|.+|+|++.|.|+|+|.|..|. |++|+
T Consensus       134 ~~~~g~~~~~Y-~v~y~~~~~~~-------~~~~------~~~~~~~~~l~~L~p~t~Y~v~Vra~~~~g~wS~wS~  196 (210)
T 3n06_B          134 DLKTGWFTLLY-EIRLKPEKAAE-------WEIH------FAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSP  196 (210)
T ss_dssp             CCTTSSCCEEE-EEEEECTTCSS-------CEEE------EEETCSEEEECCCCTTCEEEEEEEEEESSSCCCCCCC
T ss_pred             cccCCeEEEEE-EEEEecCCCCC-------CEEE------eccCceEEEEeccCCCCEEEEEEEEecCCCcccCCCC
Confidence            2 123 47999 99999876543       6421      1234688999999999999999999998887 77764

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.70  E-value=2.4e-17  Score=165.23  Aligned_cols=196  Identities=14%  Similarity=0.113  Sum_probs=123.6

Q ss_pred             CceEEee-----CceEEEcCCCC--CCeEEEEEEe------------cC----cCCeeeeCCCceEEEcCCeEEEEEEEe
Q psy15127         40 RRSRSIF-----GSVLGARGALS--DDQWKLIAKE------------AL----IKPFPISEPSDATVLSGSVVEFVCRVG   96 (633)
Q Consensus        40 ~~~~~~~-----~~~L~i~~v~~--~G~Y~C~a~~------------v~----~~p~~~~~~~~~~~~~G~~~~L~C~~~   96 (633)
                      .|+.+..     +++|.|.+++.  +|.|+|.|.+            |.    .+|.+...++...+.+|+.++|.|.+.
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~  145 (344)
T 1za6_B           66 GKATLTADTSASTAYVELSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVK  145 (344)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEE
T ss_pred             CcEEEEEecCCCEEEEEECCCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEe
Confidence            4666653     24799999998  9999999977            22    345554444344457899999999998


Q ss_pred             cc-CC-CeEEEEeCCccCCCC--C------eEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEE--E-------
Q psy15127         97 GD-PL-PTILWRRDDGKMPTG--R------AKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLT--V-------  157 (633)
Q Consensus        97 ~~-p~-p~i~W~~~~~~i~~~--~------~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~--V-------  157 (633)
                      |. |. +.|+|+|++..+...  .      ......+.|.|.+++.+| |.|+|.|.|..+.......+.  |       
T Consensus       146 g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~  224 (344)
T 1za6_B          146 DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTC  224 (344)
T ss_dssp             EEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC------
T ss_pred             eEECCCeEEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeeccccccccccc
Confidence            86 65 699999999764210  0      011112479999998888 999999999887643333222  1       


Q ss_pred             --------------EeeccccccCCCceEEecCCcEEEEEeCCCC-CC-CCeEEEEECCEEeccCCCeeE-Eeccceee-
Q psy15127        158 --------------HLLRDDFRAEPKDTRVASGETALLECGPPKG-QP-EPTLHWKKNGQFIDLESSKSL-DLSRRTLG-  219 (633)
Q Consensus       158 --------------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~p-~~~i~W~~~~~~~~~~~~~~~-~~~~~~~~-  219 (633)
                                    ...+|.+...+.......|..+.|.|.+ .| .| .+.+.|+++|..+........ ....+.+. 
T Consensus       225 ~~~~~~~~l~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~-~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~  303 (344)
T 1za6_B          225 PPCGGGSSGGGSGGQPREPQVYTLPPSRDELTKNQVSLTCLV-KGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFL  303 (344)
T ss_dssp             --------------CCBCCEEEEECCCGGGGGSSSEEEEEEE-EEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEE
T ss_pred             CCCCCCccccccCCCCcCCEEEEeCCChHhccCCcEEEEEEE-eeEECCCeEEEEEECCeECCCcEecceEECCCCcEEE
Confidence                          1112443332222223357779999994 55 45 469999999987753211111 11222221 


Q ss_pred             --eEEE-------eeeEEEEeecCCCC
Q psy15127        220 --WLRV-------RPLYWNVARPRANL  237 (633)
Q Consensus       220 --~~~~-------~g~y~C~a~~~~~~  237 (633)
                        .+.+       .|.|+|.|.|....
T Consensus       304 ~s~l~i~~~~~~~~g~YtC~a~~~~l~  330 (344)
T 1za6_B          304 YSKLTVDKSRWQQGNVFSCSVMHEALH  330 (344)
T ss_dssp             EEEEEECHHHHHTTCEEEEEEECTTST
T ss_pred             EEEEEEChHHccCCCeEEEEEEcCCCC
Confidence              1122       47899999997654

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.70  E-value=4e-17  Score=154.21  Aligned_cols=134  Identities=18%  Similarity=0.257  Sum_probs=95.7

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC-------------CCCCeEEc---ccceEEEccCCC
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM-------------PTGRAKIL---DDRSLQIENVGP  132 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i-------------~~~~~~~~---~~~~L~i~~v~~  132 (633)
                      .+.+...|..+.+.+|++++|.|.+.+.+.+.+.|+|++  ...             ..+++...   .+..|.|.+++.
T Consensus        24 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  103 (237)
T 3sob_L           24 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP  103 (237)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             cceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCCh
Confidence            455667788899999999999999998888899999943  111             12333332   245799999999


Q ss_pred             CCCeEEEEEEEeCCce-EEEEEEEEEEee--ccccccCCCceEEecCCcEEEEEeCCCCCC-CCeEEEEECCEEec
Q psy15127        133 QDEGLYICDVENLVGS-ISLRASLTVHLL--RDDFRAEPKDTRVASGETALLECGPPKGQP-EPTLHWKKNGQFID  204 (633)
Q Consensus       133 ~d~G~Y~C~~~n~~g~-~s~~~~l~V~~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~i~W~~~~~~~~  204 (633)
                      +|+|.|+|.+.+..+. ....+.|.|...  +|.+...+....+.+|+.+.|.|.+..+.| .+.+.|+++|..+.
T Consensus       104 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~  179 (237)
T 3sob_L          104 EDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQS  179 (237)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             hhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCC
Confidence            9999999999876653 333445666432  244444444444456889999999544466 68999999988765

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.70  E-value=3.1e-17  Score=153.26  Aligned_cols=127  Identities=20%  Similarity=0.250  Sum_probs=86.9

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCC--ccC--------------------CCCCeEEcc-----cceEE
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDD--GKM--------------------PTGRAKILD-----DRSLQ  126 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~--~~i--------------------~~~~~~~~~-----~~~L~  126 (633)
                      .+|..+.+.+|++++|.|.+.+.+  .+.+.|+|+.  ...                    ..++.....     +.+|+
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   84 (222)
T 1q9r_B            5 VESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQ   84 (222)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEE
T ss_pred             ecCCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEE
Confidence            445677899999999999998765  6789999853  211                    013444432     24899


Q ss_pred             EccCCCCCCeEEEEEEEeCCc-----eEEEEEEEEEEee---ccccccCCCceEEecCCcEEEEEeCCCCCCCC-eEEEE
Q psy15127        127 IENVGPQDEGLYICDVENLVG-----SISLRASLTVHLL---RDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWK  197 (633)
Q Consensus       127 i~~v~~~d~G~Y~C~~~n~~g-----~~s~~~~l~V~~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~  197 (633)
                      |.+++.+|+|.|.|.+.+..+     .....+.|.|...   +|.+...+....+.+|+.+.|.|.+....|.+ .+.|+
T Consensus        85 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  164 (222)
T 1q9r_B           85 MNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWN  164 (222)
T ss_dssp             ECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEG
T ss_pred             ECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEe
Confidence            999999999999999998654     2223456777642   24433333223356789999999953334777 89998


Q ss_pred             ECCEE
Q psy15127        198 KNGQF  202 (633)
Q Consensus       198 ~~~~~  202 (633)
                      ++|..
T Consensus       165 ~~g~~  169 (222)
T 1q9r_B          165 SGSLS  169 (222)
T ss_dssp             GGTBC
T ss_pred             cCCeE
Confidence            87654

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.69  E-value=8.8e-17  Score=150.53  Aligned_cols=128  Identities=20%  Similarity=0.274  Sum_probs=85.1

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCC--ccC------C------------CCCeEEcc-----cceEEE
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDD--GKM------P------------TGRAKILD-----DRSLQI  127 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~--~~i------~------------~~~~~~~~-----~~~L~i  127 (633)
                      +.+|..+.+.+|++++|.|.+.+.+  .+.+.|+|++  ..+      .            .+++....     +.+|.|
T Consensus         4 l~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   83 (227)
T 1mju_H            4 LQQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQL   83 (227)
T ss_dssp             EECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EcCCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEE
Confidence            3557788899999999999998766  6789999964  211      0            23444432     358999


Q ss_pred             ccCCCCCCeEEEEEEEeCCce-EEEEEEEEEEee---ccccccCCCceEEecCCcEEEEEeCCCCCCCC-eEEEEECCEE
Q psy15127        128 ENVGPQDEGLYICDVENLVGS-ISLRASLTVHLL---RDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQF  202 (633)
Q Consensus       128 ~~v~~~d~G~Y~C~~~n~~g~-~s~~~~l~V~~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~~~~  202 (633)
                      .+++.+|+|.|.|.+.+..+. ....+.|.|...   +|.+...+....+.+|+.++|.|.+....|.+ .+.|++++..
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~  163 (227)
T 1mju_H           84 SSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLS  163 (227)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             CCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCc
Confidence            999999999999999986432 223457777652   23333322223466899999999954335766 9999988764

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.69  E-value=4.1e-16  Score=149.08  Aligned_cols=129  Identities=14%  Similarity=0.280  Sum_probs=94.8

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEecc--CCCeEEEEeCC--ccC------------------CCCCeEEcc-----c
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGD--PLPTILWRRDD--GKM------------------PTGRAKILD-----D  122 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~--p~p~i~W~~~~--~~i------------------~~~~~~~~~-----~  122 (633)
                      .+|.+...+..+.+.+|++++|.|.+.+.  +.+.+.|+|..  ..+                  ..+++....     .
T Consensus         5 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   84 (256)
T 3juy_B            5 HHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT   84 (256)
T ss_dssp             --CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred             cceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence            35677888899999999999999999873  67789999843  111                  013444432     1


Q ss_pred             ceEEEccCCCCCCeEEEEEEEeC------------CceEEEEEEEEEEee--------------ccccccCCCceEEecC
Q psy15127        123 RSLQIENVGPQDEGLYICDVENL------------VGSISLRASLTVHLL--------------RDDFRAEPKDTRVASG  176 (633)
Q Consensus       123 ~~L~i~~v~~~d~G~Y~C~~~n~------------~g~~s~~~~l~V~~~--------------~p~~~~~~~~~~~~~g  176 (633)
                      .+|+|.+++.+|+|.|.|.+.+.            .+.....+.|.|...              ++.+...+....+.+|
T Consensus        85 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G  164 (256)
T 3juy_B           85 AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPG  164 (256)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTT
T ss_pred             EEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCC
Confidence            36999999999999999999986            333445567777764              2455666777888899


Q ss_pred             CcEEEEEeCCCCCCC-CeEEEEEC
Q psy15127        177 ETALLECGPPKGQPE-PTLHWKKN  199 (633)
Q Consensus       177 ~~~~l~C~~~~~~p~-~~i~W~~~  199 (633)
                      ++++|.|.+ .+.+. +.+.|+|.
T Consensus       165 ~~v~L~C~~-~~~~~~~~v~W~k~  187 (256)
T 3juy_B          165 ERATFSCRS-SHSIRSRRVAWYQH  187 (256)
T ss_dssp             SCEEEEEEE-SSCCTTCCEEEEEE
T ss_pred             CCEEEEEEE-CCCcCCeeEEEEEE
Confidence            999999994 55555 89999873

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.69  E-value=2e-16  Score=150.17  Aligned_cols=161  Identities=17%  Similarity=0.169  Sum_probs=110.7

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeE-----EcccceEEEccCCCCCCeEEEEEEE
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAK-----ILDDRSLQIENVGPQDEGLYICDVE  143 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~~~  143 (633)
                      ..+|.|...|. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+......     ...+..|.|.+++.+|+|.|+|.+.
T Consensus         5 ~~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   82 (257)
T 1b6u_A            5 HRKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGS   82 (257)
T ss_dssp             CCCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEE
T ss_pred             CCCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEe
Confidence            45788887776 67999999999999974 56789999999865321100     1234689999999999999999998


Q ss_pred             eCC-----ceEEEEEEEEEEee--ccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEE---e
Q psy15127        144 NLV-----GSISLRASLTVHLL--RDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLD---L  213 (633)
Q Consensus       144 n~~-----g~~s~~~~l~V~~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~---~  213 (633)
                      +..     ...+..+.|.|...  +|.+...+. ..+.+|++++|.|. +.+. .+.|.|+|+|..+.........   .
T Consensus        83 ~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~-~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~  159 (257)
T 1b6u_A           83 VTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCS-SRSS-YDMYHLSREGEAHERRFSAGPKVNGT  159 (257)
T ss_dssp             CSSCTTSCCCCCCCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEE-CSSC-CSEEEEEETTSSCEECCBCBCCSSSC
T ss_pred             ccCCCccccccCCCEEEecccCCCCcceEccCC-CccCCCCEEEEEEe-CCCC-CcEEEEEECCcccCcccccccccCCc
Confidence            642     12466778888763  245554544 46789999999999 4554 4699999999766532211000   0


Q ss_pred             ccceeeeEE--EeeeEEEEeecC
Q psy15127        214 SRRTLGWLR--VRPLYWNVARPR  234 (633)
Q Consensus       214 ~~~~~~~~~--~~g~y~C~a~~~  234 (633)
                      ....+.+..  ..|.|+|.|.+.
T Consensus       160 ~~~~l~I~~v~D~G~Y~C~a~~~  182 (257)
T 1b6u_A          160 FQADFPLGPATHGGTYRCFGSFR  182 (257)
T ss_dssp             CBEEEEEEECCSCEEEEEEEECS
T ss_pred             eeEEEEecccccCEEEEEEEEcC
Confidence            112222222  569999999875

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.69  E-value=4.6e-17  Score=148.82  Aligned_cols=104  Identities=18%  Similarity=0.096  Sum_probs=83.7

Q ss_pred             ceEEEcCCCC--CCeEEEEEEe------------cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCC
Q psy15127         48 SVLGARGALS--DDQWKLIAKE------------ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP  113 (633)
Q Consensus        48 ~~L~i~~v~~--~G~Y~C~a~~------------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~  113 (633)
                      ..|.|.+++.  +|.|+|.|.|            |..||.+...+....+.+|+.++|.|.+.|.|.|.|+|++++..+.
T Consensus        69 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~  148 (203)
T 4fa8_A           69 FFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEP  148 (203)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC-----
T ss_pred             EEEEEccCCHHHCeEEEEEEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeec
Confidence            4699999999  9999999998            5667777777888888999999999999999999999998776442


Q ss_pred             -----CCCeEEcccceEE---EccCCCCCCeEEEEEEEeCCceEEE
Q psy15127        114 -----TGRAKILDDRSLQ---IENVGPQDEGLYICDVENLVGSISL  151 (633)
Q Consensus       114 -----~~~~~~~~~~~L~---i~~v~~~d~G~Y~C~~~n~~g~~s~  151 (633)
                           ..+.....+++|.   |.+++.+|+|.|+|.|.|..|.+..
T Consensus       149 ~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          149 APTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             -------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             CcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence                 2345555666554   4689999999999999999998664

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.69  E-value=6e-17  Score=150.57  Aligned_cols=128  Identities=16%  Similarity=0.189  Sum_probs=88.0

Q ss_pred             CCCceEEEcCCeEEEEEEE-eccC-CCeEEEEeCCc--cC-------------CCCCeEEcc---cceEEEccCCCCCCe
Q psy15127         77 EPSDATVLSGSVVEFVCRV-GGDP-LPTILWRRDDG--KM-------------PTGRAKILD---DRSLQIENVGPQDEG  136 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~-~~~p-~p~i~W~~~~~--~i-------------~~~~~~~~~---~~~L~i~~v~~~d~G  136 (633)
                      +|..+.+.+|++++|.|.+ .+.+ .+.|.|+|++.  .+             ..+++....   ...|.|.+++.+|+|
T Consensus         6 qp~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   85 (216)
T 2xzc_L            6 QPPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEA   85 (216)
T ss_dssp             CCSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCE
Confidence            3778899999999999995 4442 57899999542  21             022433332   348999999999999


Q ss_pred             EEEEEEEeCCc--eEEEEEEEEEEee--ccccccCCCceEEecCCcEEEEEeCCCCCCCC-eEEEEECCEEec
Q psy15127        137 LYICDVENLVG--SISLRASLTVHLL--RDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFID  204 (633)
Q Consensus       137 ~Y~C~~~n~~g--~~s~~~~l~V~~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~~~~~~  204 (633)
                      .|+|.|.|..+  .....+.|.|...  +|.+...+.......|+.+.|.|.+..+.|.+ .|.|+++|..+.
T Consensus        86 ~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~  158 (216)
T 2xzc_L           86 DYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQS  158 (216)
T ss_dssp             EEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             EEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecC
Confidence            99999999876  2333456777532  24444433222234688999999954335664 899999988664

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.68  E-value=1.6e-16  Score=153.70  Aligned_cols=128  Identities=19%  Similarity=0.309  Sum_probs=88.9

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCcc-----C----------CCCCeEEcc---cceEEEccCCC
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK-----M----------PTGRAKILD---DRSLQIENVGP  132 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~-----i----------~~~~~~~~~---~~~L~i~~v~~  132 (633)
                      .+.+...|..+.+.+|++++|.|.+.+.|.+.|.|+|++..     +          ..+++....   ..+|.|.+++.
T Consensus        12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   91 (276)
T 3auv_A           12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP   91 (276)
T ss_dssp             CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence            35677778888999999999999999888889999996421     1          022433332   23899999999


Q ss_pred             CCCeEEEEEEEeCCce-EEEEEEEEEEeec------------cc-cccCCCceEEecCCcEEEEEeCCCCCC--CCeEEE
Q psy15127        133 QDEGLYICDVENLVGS-ISLRASLTVHLLR------------DD-FRAEPKDTRVASGETALLECGPPKGQP--EPTLHW  196 (633)
Q Consensus       133 ~d~G~Y~C~~~n~~g~-~s~~~~l~V~~~~------------p~-~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~i~W  196 (633)
                      +|+|.|.|.+.|..+. ....+.|.|...+            |. ....|....+.+|++++|.|.+ .+.+  .+.+.|
T Consensus        92 ~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~-~g~~~~~~~v~W  170 (276)
T 3auv_A           92 EDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAA-SGFTISDYWIHW  170 (276)
T ss_dssp             GGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEE-ESSCGGGSEEEE
T ss_pred             hhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEe-cCccCCCCEEEE
Confidence            9999999999987543 3334566666541            12 2233455677788888888884 4444  478888


Q ss_pred             EEC
Q psy15127        197 KKN  199 (633)
Q Consensus       197 ~~~  199 (633)
                      +|+
T Consensus       171 ~k~  173 (276)
T 3auv_A          171 VRQ  173 (276)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            875

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.68  E-value=4.2e-17  Score=150.88  Aligned_cols=126  Identities=19%  Similarity=0.263  Sum_probs=87.7

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCC--ccC-----------------CCCCeEEcc-----cceEEEcc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDD--GKM-----------------PTGRAKILD-----DRSLQIEN  129 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~--~~i-----------------~~~~~~~~~-----~~~L~i~~  129 (633)
                      .+|..+.+.+|++++|.|.+.+.+  .+.+.|+|++  ...                 ..++.....     +.+|.|.+
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   84 (210)
T 3d9a_H            5 QESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNS   84 (210)
T ss_dssp             EEESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             ecCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECC
Confidence            346778899999999999998765  4789999853  211                 123444432     23899999


Q ss_pred             CCCCCCeEEEEEEEeCCceEEEEEEEEEEee---ccccccCCCceEEecCCcEEEEEeCCCCCCCC-eEEEEECCEE
Q psy15127        130 VGPQDEGLYICDVENLVGSISLRASLTVHLL---RDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQF  202 (633)
Q Consensus       130 v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~~~~  202 (633)
                      ++.+|+|.|.|.+.+.. .....+.|.|...   +|.+...+....+.+|+.+.|.|.+....|.+ .+.|++++..
T Consensus        85 v~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~  160 (210)
T 3d9a_H           85 VTTEDTATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  160 (210)
T ss_dssp             CCGGGCEEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             CCcccCEEEEEEEecCc-ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcc
Confidence            99999999999998863 2223356666631   24443333333467899999999954334877 9999988764

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.68  E-value=2.6e-16  Score=143.15  Aligned_cols=139  Identities=24%  Similarity=0.344  Sum_probs=110.5

Q ss_pred             CCCccccccceeeEEEEecccCCC-CCceEEeeC-ceEEEcCCCC--CCeEEEEEEe-------------cCcCCeeeeC
Q psy15127         15 SPRAEIEPATRTNRVSISGDPGFD-SRRSRSIFG-SVLGARGALS--DDQWKLIAKE-------------ALIKPFPISE   77 (633)
Q Consensus        15 ~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~L~i~~v~~--~G~Y~C~a~~-------------v~~~p~~~~~   77 (633)
                      .|.+.|+|+       .+|.+... ..++.+..+ ++|.|.+++.  +|.|+|.+.+             +..+|.+...
T Consensus        34 ~p~~~i~W~-------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~  106 (192)
T 2iep_A           34 YPQPEISWT-------RNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRP  106 (192)
T ss_dssp             ESCCEEEEE-------ETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEEEEEEEEEC
T ss_pred             CCCCeEEEE-------ECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEEeCCccccC
Confidence            455566643       33433332 456665544 4699999998  9999999987             4567788888


Q ss_pred             CCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEcccceEEEccCCCCCCeEEEEEEEeCCceE-EEEEEE
Q psy15127         78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDDRSLQIENVGPQDEGLYICDVENLVGSI-SLRASL  155 (633)
Q Consensus        78 ~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~-s~~~~l  155 (633)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+..+ +.....++.|.|.+++.+|+|.|+|.|.|..|.. +..+.|
T Consensus       107 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l  186 (192)
T 2iep_A          107 PINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKL  186 (192)
T ss_dssp             CCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred             CcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEE
Confidence            88889999999999999999999999999999988654 4455567799999999999999999999999986 567888


Q ss_pred             EEEee
Q psy15127        156 TVHLL  160 (633)
Q Consensus       156 ~V~~~  160 (633)
                      .|..+
T Consensus       187 ~V~~p  191 (192)
T 2iep_A          187 EVEVF  191 (192)
T ss_dssp             EEEC-
T ss_pred             EEEeC
Confidence            88876

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.68  E-value=2e-16  Score=149.76  Aligned_cols=126  Identities=20%  Similarity=0.276  Sum_probs=92.8

Q ss_pred             eeeeCCCceEEEcCCeEEEEEEEeccC----CCeEEEEeCC--ccC-------------CCCCeEEcc---cceEEEccC
Q psy15127         73 FPISEPSDATVLSGSVVEFVCRVGGDP----LPTILWRRDD--GKM-------------PTGRAKILD---DRSLQIENV  130 (633)
Q Consensus        73 ~~~~~~~~~~~~~G~~~~L~C~~~~~p----~p~i~W~~~~--~~i-------------~~~~~~~~~---~~~L~i~~v  130 (633)
                      .+...|..+.+.+|++++|.|.+.+.|    .+.|.|+|++  ..+             ..+++....   ..+|.|.++
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   82 (240)
T 1moe_A            3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPV   82 (240)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCC
Confidence            456678888999999999999999887    7789999963  211             012333322   237999999


Q ss_pred             CCCCCeEEEEEEEeCCce-EEEEEEEEEEeec-----cccccCCCceEEecCCcEEEEEeCCCCCC--CCeEEEEEC
Q psy15127        131 GPQDEGLYICDVENLVGS-ISLRASLTVHLLR-----DDFRAEPKDTRVASGETALLECGPPKGQP--EPTLHWKKN  199 (633)
Q Consensus       131 ~~~d~G~Y~C~~~n~~g~-~s~~~~l~V~~~~-----p~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~i~W~~~  199 (633)
                      +.+|+|.|+|.|.|..+. ....+.|.|...+     +.+...+....+.+|+.++|.|. ..+.|  .+.+.|+|+
T Consensus        83 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~-~~g~p~~~~~v~W~k~  158 (240)
T 1moe_A           83 EADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCT-ASGFNIKDTYMHWVKQ  158 (240)
T ss_dssp             CGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEE-EESSCGGGSCEEEEEE
T ss_pred             ChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEE-EcCccCCCCEEEEEEE
Confidence            999999999999987654 4455677887642     22334566677889999999999 45555  468999885

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.68  E-value=1e-15  Score=139.05  Aligned_cols=126  Identities=21%  Similarity=0.312  Sum_probs=101.5

Q ss_pred             EecccCCCCCceEEeeCceEEEcCCCC--CCeEEEEEEe-----------cCcCCeeeeCCCceEEEcCCeEEEEEEEec
Q psy15127         31 ISGDPGFDSRRSRSIFGSVLGARGALS--DDQWKLIAKE-----------ALIKPFPISEPSDATVLSGSVVEFVCRVGG   97 (633)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~L~i~~v~~--~G~Y~C~a~~-----------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~   97 (633)
                      .+|.+...+.+..  .++.|.|.+++.  +|.|+|.|.|           +..+|.+...+....+.+|+.+.|.|.+.|
T Consensus        41 ~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g  118 (190)
T 2wv3_A           41 KNGVELTATRKNA--SNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVG  118 (190)
T ss_dssp             ETTEECTTCCBCC--SEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEEC
T ss_pred             ECCEECcccceEe--ccEEEEEecCCcccCEEEEEEEEeCCcccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCc
Confidence            3444444433321  457899999999  9999999987           567888888888889999999999999999


Q ss_pred             cCCCeEEEEe--CCccCC----CCCeEEccc---ceEEEccCC-CCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy15127         98 DPLPTILWRR--DDGKMP----TGRAKILDD---RSLQIENVG-PQDEGLYICDVENLVGSISLRASLTVH  158 (633)
Q Consensus        98 ~p~p~i~W~~--~~~~i~----~~~~~~~~~---~~L~i~~v~-~~d~G~Y~C~~~n~~g~~s~~~~l~V~  158 (633)
                      .|.|.+.|++  ++..+.    .++.....+   +.|.|.+++ .+|+|.|+|.|.|..|..+..+.|.|.
T Consensus       119 ~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          119 YPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             SSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             cCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            9999999999  676552    334444332   379999999 799999999999999999888888876

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.68  E-value=1.9e-17  Score=153.48  Aligned_cols=128  Identities=24%  Similarity=0.304  Sum_probs=88.7

Q ss_pred             CCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccCC-------------CCCeEEcc---cceEEEccCCCCCCeEEE
Q psy15127         78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKMP-------------TGRAKILD---DRSLQIENVGPQDEGLYI  139 (633)
Q Consensus        78 ~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i~-------------~~~~~~~~---~~~L~i~~v~~~d~G~Y~  139 (633)
                      |..+.+.+|++++|.|.+.+.|.+.|.|+|++  ..+.             .+++....   ...|.|.+++.+|+|.|+
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   85 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence            78889999999999999988888889999853  2220             23433332   248999999999999999


Q ss_pred             EEEEeC-Cce--EEEEEEEEEEe---eccccccCCCceEEecCCcEEEEEeCCCCCCC-CeEEEEECCEEecc
Q psy15127        140 CDVENL-VGS--ISLRASLTVHL---LRDDFRAEPKDTRVASGETALLECGPPKGQPE-PTLHWKKNGQFIDL  205 (633)
Q Consensus       140 C~~~n~-~g~--~s~~~~l~V~~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~i~W~~~~~~~~~  205 (633)
                      |.|.|. .+.  ......|.|..   .+|.+...+....+.+|+.+.|.|.+....|. +.|.|+++|..+..
T Consensus        86 C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~  158 (212)
T 1nfd_E           86 CLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATIND  158 (212)
T ss_dssp             EEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECS
T ss_pred             EEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCC
Confidence            999973 222  23335566642   22455444443445578899999985333354 68888888877653

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.67  E-value=8.9e-16  Score=148.91  Aligned_cols=123  Identities=20%  Similarity=0.372  Sum_probs=86.7

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCCc--cC------------------CCCCeEEcc-----cceEE
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDDG--KM------------------PTGRAKILD-----DRSLQ  126 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~~--~i------------------~~~~~~~~~-----~~~L~  126 (633)
                      +...|..+.+.+|++++|.|.+.+.+  .+.+.|+|++.  .+                  ..+++....     ..+|.
T Consensus        29 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~  108 (282)
T 1qok_A           29 KLQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQ  108 (282)
T ss_dssp             EEEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEE
T ss_pred             EEECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEE
Confidence            34567788999999999999998774  57899999642  11                  023444332     25799


Q ss_pred             EccCCCCCCeEEEEEEEeCCc---e--EEEEEEEEEEeec--------------cccccCCCceEEecCCcEEEEEeCCC
Q psy15127        127 IENVGPQDEGLYICDVENLVG---S--ISLRASLTVHLLR--------------DDFRAEPKDTRVASGETALLECGPPK  187 (633)
Q Consensus       127 i~~v~~~d~G~Y~C~~~n~~g---~--~s~~~~l~V~~~~--------------p~~~~~~~~~~~~~g~~~~l~C~~~~  187 (633)
                      |.+++.+|+|.|.|.+.|..|   .  ....+.|.|...+              +.+...|....+.+|++++|.|. ..
T Consensus       109 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~-~~  187 (282)
T 1qok_A          109 LSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCS-AS  187 (282)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEE-ES
T ss_pred             ECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEE-ec
Confidence            999999999999999998865   1  2234567777641              23344555666778888888888 45


Q ss_pred             CCCCCeEEEEE
Q psy15127        188 GQPEPTLHWKK  198 (633)
Q Consensus       188 ~~p~~~i~W~~  198 (633)
                      +.+ +.+.|+|
T Consensus       188 ~~~-~~v~W~k  197 (282)
T 1qok_A          188 SSV-SYMHWFQ  197 (282)
T ss_dssp             SCC-SCCEEEE
T ss_pred             CCC-ceEEEEE
Confidence            556 7788877

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.67  E-value=3.5e-16  Score=141.87  Aligned_cols=148  Identities=22%  Similarity=0.322  Sum_probs=109.5

Q ss_pred             ccCCCCCCCCCCccccccceeeEEEEecccCCCCCceEEeeCceEEEcCCCC--CCeEEEEEEe--------------cC
Q psy15127          6 DTNHAHPMSSPRAEIEPATRTNRVSISGDPGFDSRRSRSIFGSVLGARGALS--DDQWKLIAKE--------------AL   69 (633)
Q Consensus         6 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~--~G~Y~C~a~~--------------v~   69 (633)
                      .+.|.. .+.|.+.|.|+......     ......++.+..+++|.|.+++.  +|.|+|.+.+              +.
T Consensus        21 ~l~C~~-~~~p~~~v~W~~~~~~~-----~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~   94 (189)
T 2v5t_A           21 EVVCRV-SSSPAPAVSWLYHNEEV-----TTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN   94 (189)
T ss_dssp             EECCEE-ECSSCCEEEEEC----------CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred             EEEEEE-cCCCCCEEEEEECCccc-----eeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCCCceEEEEEEEEec
Confidence            344433 34466677755432211     11245677777788999999998  9999999987              33


Q ss_pred             cCCeeeeCCC--ceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEc--ccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         70 IKPFPISEPS--DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL--DDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        70 ~~p~~~~~~~--~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      .+|.+...+.  ...+.+|+.+.|.|.+.+.|.+.+.|+++|..+........  .+..|.|.+++.+|+|.|+|.|.|.
T Consensus        95 ~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  174 (189)
T 2v5t_A           95 VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNK  174 (189)
T ss_dssp             EEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTTTEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCCCEEEEcCCChhhCeeEEEEEEeC
Confidence            4555554444  34567899999999999999999999999998876543322  3568999999999999999999999


Q ss_pred             CceEEEEEEEEEEe
Q psy15127        146 VGSISLRASLTVHL  159 (633)
Q Consensus       146 ~g~~s~~~~l~V~~  159 (633)
                      .|..+..+.|.|..
T Consensus       175 ~g~~~~~~~l~V~v  188 (189)
T 2v5t_A          175 AGEDEKQAFLQVFV  188 (189)
T ss_dssp             TEEEEEEEEEEEEC
T ss_pred             CCceeEEEEEEEEe
Confidence            99988888888763

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.67  E-value=2.4e-16  Score=151.01  Aligned_cols=129  Identities=14%  Similarity=0.148  Sum_probs=84.7

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccCC------------------CCCeEEc-----ccceE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKMP------------------TGRAKIL-----DDRSL  125 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i~------------------~~~~~~~-----~~~~L  125 (633)
                      +|.+...|..+.+.+|++++|.|.+.+.+.+.+.|+|..  ....                  .+++...     .+.+|
T Consensus         2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (259)
T 3omz_A            2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM   81 (259)
T ss_dssp             ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred             ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence            466777888999999999999999998888899999932  1110                  0011111     13469


Q ss_pred             EEccCCCCCCeEEEEEEEeCCc---eEEEEEEEEEEee----------------ccccccCCCceEEecCCcEEEEEeCC
Q psy15127        126 QIENVGPQDEGLYICDVENLVG---SISLRASLTVHLL----------------RDDFRAEPKDTRVASGETALLECGPP  186 (633)
Q Consensus       126 ~i~~v~~~d~G~Y~C~~~n~~g---~~s~~~~l~V~~~----------------~p~~~~~~~~~~~~~g~~~~l~C~~~  186 (633)
                      .|.+++.+|+|.|.|.+.+..+   .....+.|.|...                .+.+...|....+.+|++++|.|.+.
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~  161 (259)
T 3omz_A           82 ILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYE  161 (259)
T ss_dssp             EESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEE
T ss_pred             EECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECC
Confidence            9999999999999999998765   3445567777764                24556677778899999999999843


Q ss_pred             CCCCCCeEEEEEC
Q psy15127        187 KGQPEPTLHWKKN  199 (633)
Q Consensus       187 ~~~p~~~i~W~~~  199 (633)
                      ...+.+.+.|+|.
T Consensus       162 ~~~~~~~v~W~k~  174 (259)
T 3omz_A          162 TSWWSYYIFWYKR  174 (259)
T ss_dssp             CCCSSCEEEEEEE
T ss_pred             CccCCceEEEeee
Confidence            3347889999984

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.67  E-value=7.1e-17  Score=153.99  Aligned_cols=134  Identities=19%  Similarity=0.231  Sum_probs=94.4

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccC-----CCeEEEEeCCc--cC-------------CCCCeEEcc---cceEEE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDP-----LPTILWRRDDG--KM-------------PTGRAKILD---DRSLQI  127 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p-----~p~i~W~~~~~--~i-------------~~~~~~~~~---~~~L~i  127 (633)
                      .+.+...|..+.+.+|++++|.|.+.+.+     .+.|.|+|++.  .+             ..+++....   +.+|.|
T Consensus        34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I  113 (252)
T 3bkj_L           34 DVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRI  113 (252)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred             ccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEE
Confidence            45666778888999999999999998877     58899999642  11             023433332   238999


Q ss_pred             ccCCCCCCeEEEEEEEeCCce-EEEEEEEEEEee--ccccccCCCceEEecCCcEEEEEeCCCCCCCC-eEEEEECCEEe
Q psy15127        128 ENVGPQDEGLYICDVENLVGS-ISLRASLTVHLL--RDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFI  203 (633)
Q Consensus       128 ~~v~~~d~G~Y~C~~~n~~g~-~s~~~~l~V~~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~~~~~  203 (633)
                      .+++.+|+|.|.|.+.+..+. ....+.|.|...  +|.+...+....+.+|+.++|.|.+....|.+ .|.|+++|..+
T Consensus       114 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~  193 (252)
T 3bkj_L          114 SRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER  193 (252)
T ss_dssp             SSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             CCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeec
Confidence            999999999999999887553 223356777642  25544433333344789999999954335554 89999998866


Q ss_pred             c
Q psy15127        204 D  204 (633)
Q Consensus       204 ~  204 (633)
                      .
T Consensus       194 ~  194 (252)
T 3bkj_L          194 Q  194 (252)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.67  E-value=3.8e-16  Score=126.17  Aligned_cols=92  Identities=25%  Similarity=0.459  Sum_probs=80.8

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEE-cc---cceEEEccCCCCCCeEEEEEEEe
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKI-LD---DRSLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~-~~---~~~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                      ..+|.|+..|.++.+.+|+.+.|.|.+.|.|.|.|+|+|+|..|..+.+.. ..   ..+|.|.+++.+|+|.|+|.|.|
T Consensus        11 ~~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   90 (107)
T 3knb_B           11 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN   90 (107)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEE
Confidence            357899999999999999999999999999999999999999997654333 22   24799999999999999999999


Q ss_pred             CCceEEEEEEEEEEee
Q psy15127        145 LVGSISLRASLTVHLL  160 (633)
Q Consensus       145 ~~g~~s~~~~l~V~~~  160 (633)
                      ..|..+..+.|.|..+
T Consensus        91 ~~G~~~~~~~l~V~~p  106 (107)
T 3knb_B           91 AAGEAYAAAAVTVLEP  106 (107)
T ss_dssp             TTEEEEEEEEEEEEC-
T ss_pred             CCCEEEEEEEEEEEcC
Confidence            9999999999999876

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.67  E-value=4.2e-16  Score=148.18  Aligned_cols=126  Identities=18%  Similarity=0.239  Sum_probs=87.4

Q ss_pred             eeeeCCCceEEEcCCeEEEEEEEeccC-----CCeEEEEeCC--ccC-------------CCCCeEEcc---cceEEEcc
Q psy15127         73 FPISEPSDATVLSGSVVEFVCRVGGDP-----LPTILWRRDD--GKM-------------PTGRAKILD---DRSLQIEN  129 (633)
Q Consensus        73 ~~~~~~~~~~~~~G~~~~L~C~~~~~p-----~p~i~W~~~~--~~i-------------~~~~~~~~~---~~~L~i~~  129 (633)
                      .+...|..+.+.+|++++|.|.+.+.+     .+.+.|+|+.  ..+             ..+++....   ...|.|.+
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   82 (247)
T 1svz_A            3 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISR   82 (247)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred             cEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECC
Confidence            456678888999999999999998877     6889999953  211             023433322   24799999


Q ss_pred             CCCCCCeEEEEEEEeCCce-EEEEEEEEEEeec------------cccccCCCceEEecCCcEEEEEeCCCCCC--CCeE
Q psy15127        130 VGPQDEGLYICDVENLVGS-ISLRASLTVHLLR------------DDFRAEPKDTRVASGETALLECGPPKGQP--EPTL  194 (633)
Q Consensus       130 v~~~d~G~Y~C~~~n~~g~-~s~~~~l~V~~~~------------p~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~i  194 (633)
                      ++.+|+|.|.|.+.|..+. ....+.|.|..++            +.....+....+.+|++++|.|.+ .+.+  .+.+
T Consensus        83 v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~v  161 (247)
T 1svz_A           83 VEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKA-TNYAFTDYSM  161 (247)
T ss_dssp             CCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEE-ESSCGGGSCE
T ss_pred             CCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEE-cCcccCCcEE
Confidence            9999999999999987553 3334677776641            112233334458889999999984 4443  5688


Q ss_pred             EEEEC
Q psy15127        195 HWKKN  199 (633)
Q Consensus       195 ~W~~~  199 (633)
                      .|+|+
T Consensus       162 ~W~k~  166 (247)
T 1svz_A          162 HWVKQ  166 (247)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            89875

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.67  E-value=1.3e-16  Score=148.66  Aligned_cols=126  Identities=25%  Similarity=0.361  Sum_probs=88.6

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCC--cc---C----C-------------CCCeEEcc-----cceEE
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDD--GK---M----P-------------TGRAKILD-----DRSLQ  126 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~--~~---i----~-------------~~~~~~~~-----~~~L~  126 (633)
                      .+|..+.+.+|++++|.|.+.+.+  .+.+.|+|++  ..   +    .             .++.....     +..|.
T Consensus         5 ~~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   84 (220)
T 1pz5_B            5 EESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQ   84 (220)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred             eccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEE
Confidence            446778899999999999998765  6789999953  11   1    0             23444432     23899


Q ss_pred             EccCCCCCCeEEEEEEEeCCce---EEEEEEEEEEee---ccccccCCCceEEecCCcEEEEEeCCCCCCCC-eEEEEEC
Q psy15127        127 IENVGPQDEGLYICDVENLVGS---ISLRASLTVHLL---RDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKN  199 (633)
Q Consensus       127 i~~v~~~d~G~Y~C~~~n~~g~---~s~~~~l~V~~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~  199 (633)
                      |.+++.+|+|.|.|.+.+..+.   ....+.|.|...   +|.+...+....+.+|+.+.|.|.+....|.+ .+.|+++
T Consensus        85 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  164 (220)
T 1pz5_B           85 MNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYG  164 (220)
T ss_dssp             ECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             EccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecC
Confidence            9999999999999999987532   123467777632   24443333333457899999999954334888 9999987


Q ss_pred             CE
Q psy15127        200 GQ  201 (633)
Q Consensus       200 ~~  201 (633)
                      +.
T Consensus       165 ~~  166 (220)
T 1pz5_B          165 AL  166 (220)
T ss_dssp             TC
T ss_pred             Cc
Confidence            65

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.67  E-value=4.8e-17  Score=153.31  Aligned_cols=132  Identities=20%  Similarity=0.204  Sum_probs=89.9

Q ss_pred             CeeeeCCCceEEEcCCeEEEEEEEeccC-CC-eEEEEeCC--ccC-------------CCCCeEEc---ccceEEEccCC
Q psy15127         72 PFPISEPSDATVLSGSVVEFVCRVGGDP-LP-TILWRRDD--GKM-------------PTGRAKIL---DDRSLQIENVG  131 (633)
Q Consensus        72 p~~~~~~~~~~~~~G~~~~L~C~~~~~p-~p-~i~W~~~~--~~i-------------~~~~~~~~---~~~~L~i~~v~  131 (633)
                      +.+.. |..+.+.+|++++|.|.+.+.+ .+ .+.|+|++  ..+             ..+++...   .+..|.|.+++
T Consensus        21 ~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   99 (234)
T 2j6e_L           21 SVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLR   99 (234)
T ss_dssp             CCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCC
T ss_pred             cEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCC
Confidence            33444 7788899999999999998754 34 69999963  221             01233332   23489999999


Q ss_pred             CCCCeEEEEEEEeCCc---eEEEEEEEEEEe---eccccccCCCceEEecCCcEEEEEeCCCCCCC-CeEEEEECCEEec
Q psy15127        132 PQDEGLYICDVENLVG---SISLRASLTVHL---LRDDFRAEPKDTRVASGETALLECGPPKGQPE-PTLHWKKNGQFID  204 (633)
Q Consensus       132 ~~d~G~Y~C~~~n~~g---~~s~~~~l~V~~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~i~W~~~~~~~~  204 (633)
                      .+|+|.|+|.|.+..+   .....+.|.|..   .+|.+...+.......|+.+.|.|.+....|. +.|.|+++|..+.
T Consensus       100 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~  179 (234)
T 2j6e_L          100 SEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVK  179 (234)
T ss_dssp             STTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECC
T ss_pred             HHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECC
Confidence            9999999999999877   233345666642   12444443333334468899999995433454 4899999988764

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.67  E-value=8.9e-16  Score=142.20  Aligned_cols=144  Identities=15%  Similarity=0.039  Sum_probs=103.3

Q ss_pred             CCCccccccceeeEEEEecccCCCCCceEEeeCceEEEcCCCC--CCeEEEEEEe-------------cCc--CCeeeeC
Q psy15127         15 SPRAEIEPATRTNRVSISGDPGFDSRRSRSIFGSVLGARGALS--DDQWKLIAKE-------------ALI--KPFPISE   77 (633)
Q Consensus        15 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~--~G~Y~C~a~~-------------v~~--~p~~~~~   77 (633)
                      .|.+.|+|+++..    +|.+..++.++....++.|.|.+++.  +|.|+|.|.|             +..  +|.+...
T Consensus        35 ~p~~~v~w~~~~~----~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~  110 (213)
T 2x1w_L           35 ISNLNVSLCARYP----EKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLS  110 (213)
T ss_dssp             STTCCEEEEEETT----TEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEECCCEEEEECBCCEEEEEEE
T ss_pred             CCCcEEEEEhhcC----CCccccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEc
Confidence            3667888655300    13334445566666778899999998  9999999987             211  3444444


Q ss_pred             CC-ceEEEcCCeEEEEEEEeccC--CCeEEEEeCCccCCCCCe---E---------EcccceEEEccCCCCCCeEEEEEE
Q psy15127         78 PS-DATVLSGSVVEFVCRVGGDP--LPTILWRRDDGKMPTGRA---K---------ILDDRSLQIENVGPQDEGLYICDV  142 (633)
Q Consensus        78 ~~-~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~~~i~~~~~---~---------~~~~~~L~i~~v~~~d~G~Y~C~~  142 (633)
                      +. .+.+.+|++++|.|.+.+.|  .+.++|++++..+.....   .         ....+.|.|.+++.+|+|.|+|.|
T Consensus       111 ~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  190 (213)
T 2x1w_L          111 PSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAA  190 (213)
T ss_dssp             SCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEE
Confidence            44 44899999999999999854  347999999887533211   0         111346999999999999999999


Q ss_pred             EeCCceEEEEEEEEEEeeccc
Q psy15127        143 ENLVGSISLRASLTVHLLRDD  163 (633)
Q Consensus       143 ~n~~g~~s~~~~l~V~~~~p~  163 (633)
                      .|..|..+..+.|.|... |.
T Consensus       191 ~N~~g~~~~~~~l~V~~~-p~  210 (213)
T 2x1w_L          191 SSGLMTKKNSTFVRVHED-PI  210 (213)
T ss_dssp             ECSSCEEEEEEEEEEEC----
T ss_pred             ecCCCcEEEEEEEEEecc-cc
Confidence            999999999999999886 54

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.67  E-value=7.6e-16  Score=140.52  Aligned_cols=108  Identities=24%  Similarity=0.397  Sum_probs=94.4

Q ss_pred             CceEEEcCCCC--CCeEEEEEEe-------------cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCC-eEEEEeCCc
Q psy15127         47 GSVLGARGALS--DDQWKLIAKE-------------ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDG  110 (633)
Q Consensus        47 ~~~L~i~~v~~--~G~Y~C~a~~-------------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p-~i~W~~~~~  110 (633)
                      +++|.|.+++.  +|.|+|.|.+             +..+|.+...+....+.+|+.+.|.|.+.+.|.| .+.|+|++.
T Consensus        67 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~  146 (195)
T 2c5d_C           67 VSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAV  146 (195)
T ss_dssp             EEEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSC
T ss_pred             ccEEEEEeccccCCcEEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCE
Confidence            36899999998  9999999988             5677888888888999999999999999999999 999999999


Q ss_pred             cCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEE-EEEEEEE
Q psy15127        111 KMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSIS-LRASLTV  157 (633)
Q Consensus       111 ~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s-~~~~l~V  157 (633)
                      .+...... ..++.|.|.+++  |+|.|+|.|.|..|... ..+.|.|
T Consensus       147 ~~~~~~~~-~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          147 PLATAPGH-GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             BSSSSTTS-SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             eccCCCCc-CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            88654322 456789999997  89999999999999874 7888888

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.66  E-value=3.6e-16  Score=149.47  Aligned_cols=124  Identities=19%  Similarity=0.273  Sum_probs=80.8

Q ss_pred             eeCCCceEEEcCCeEEEEEEEecc--CCCeEEEEeCC--ccC-------------CCCCeEEcc---cceEEEccCCCCC
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGD--PLPTILWRRDD--GKM-------------PTGRAKILD---DRSLQIENVGPQD  134 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~--p~p~i~W~~~~--~~i-------------~~~~~~~~~---~~~L~i~~v~~~d  134 (633)
                      +..|..+.+.+|++++|.|.+.+.  +.+.+.|+|+.  ...             ..+++....   ...|.|.+++.+|
T Consensus         6 v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   85 (256)
T 3ux9_B            6 LTQPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSED   85 (256)
T ss_dssp             CBCCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             EecCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhh
Confidence            345667889999999999999876  77889999953  211             112333322   2379999999999


Q ss_pred             CeEEEEEEEeCCce---EEEEEEEEEEeeccc-------------------cccCCCceEEecCCcEEEEEeCCCCCC--
Q psy15127        135 EGLYICDVENLVGS---ISLRASLTVHLLRDD-------------------FRAEPKDTRVASGETALLECGPPKGQP--  190 (633)
Q Consensus       135 ~G~Y~C~~~n~~g~---~s~~~~l~V~~~~p~-------------------~~~~~~~~~~~~g~~~~l~C~~~~~~p--  190 (633)
                      +|.|.|.+.+..+.   ....+.|.|..++..                   ....+....+.+|++++|.|.+ .+.+  
T Consensus        86 sG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~  164 (256)
T 3ux9_B           86 EADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAA-SGFTFS  164 (256)
T ss_dssp             CEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEE-ESSCGG
T ss_pred             CEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEE-eCCccc
Confidence            99999999986542   334567777765210                   1122223346677777777773 4444  


Q ss_pred             CCeEEEEEC
Q psy15127        191 EPTLHWKKN  199 (633)
Q Consensus       191 ~~~i~W~~~  199 (633)
                      .+.+.|+|+
T Consensus       165 ~~~v~W~r~  173 (256)
T 3ux9_B          165 SYAMSWVRQ  173 (256)
T ss_dssp             GSEEEEEEE
T ss_pred             ccEEEEEEE
Confidence            567777764

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.66  E-value=1.2e-15  Score=141.33  Aligned_cols=140  Identities=26%  Similarity=0.391  Sum_probs=107.7

Q ss_pred             CCCCccccccceeeEEEEecccCC-CCCceEEee--C--ceEEEcCCCC---CCeEEEEEEe-------------cCc--
Q psy15127         14 SSPRAEIEPATRTNRVSISGDPGF-DSRRSRSIF--G--SVLGARGALS---DDQWKLIAKE-------------ALI--   70 (633)
Q Consensus        14 ~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~--~--~~L~i~~v~~---~G~Y~C~a~~-------------v~~--   70 (633)
                      +.|.+.|+|+       .+|.+.. ...++.+..  +  .+|.|.+++.   +|.|+|.|.|             +..  
T Consensus        32 g~p~~~v~W~-------~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~  104 (212)
T 2yd1_A           32 GDPPPSIVWR-------KNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGD  104 (212)
T ss_dssp             CSSCCEEEEE-------ETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTT
T ss_pred             cCCCCeEEEE-------ECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEeccc
Confidence            3455566633       3444443 344555432  3  4799999863   9999999988             222  


Q ss_pred             -----CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCC-CCeEEcccceEEEccCCCCCCeEEEEEEEe
Q psy15127         71 -----KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT-GRAKILDDRSLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus        71 -----~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                           .|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. .......++.|.|.+++.+|+|.|+|.|.|
T Consensus       105 ~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  184 (212)
T 2yd1_A          105 KTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAEN  184 (212)
T ss_dssp             CSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEETTEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccCCeEEEccCChhhCEEEEEEeec
Confidence                 27788888888899999999999999999999999999998864 334455677999999999999999999999


Q ss_pred             CCceEEEE-EEEEEEee
Q psy15127        145 LVGSISLR-ASLTVHLL  160 (633)
Q Consensus       145 ~~g~~s~~-~~l~V~~~  160 (633)
                      ..|..... +.|.|...
T Consensus       185 ~~G~~~s~~~~l~V~~~  201 (212)
T 2yd1_A          185 SMGTEHSKATNLYVKVR  201 (212)
T ss_dssp             TTEEEECCCEEEEEEC-
T ss_pred             CCCceeEEEEEEEEEec
Confidence            99987654 88888875

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.66  E-value=6.3e-16  Score=146.32  Aligned_cols=126  Identities=18%  Similarity=0.200  Sum_probs=86.0

Q ss_pred             eeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC-------------CCCCeEEcc---cceEEEccCCCCC
Q psy15127         73 FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM-------------PTGRAKILD---DRSLQIENVGPQD  134 (633)
Q Consensus        73 ~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i-------------~~~~~~~~~---~~~L~i~~v~~~d  134 (633)
                      .+...|..+.+.+|++++|.|.+.+.|.+.+.|+|+.  ...             ..+++....   ..+|.|.+++.+|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (242)
T 2znx_A            3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED   82 (242)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             cEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHH
Confidence            4667788899999999999999998888899999953  111             123433322   3479999999999


Q ss_pred             CeEEEEEEEeCCce-EEEEEEEEEEeecc------------ccccCCCceEEecCCcEEEEEeCCCCCC--CCeEEEEEC
Q psy15127        135 EGLYICDVENLVGS-ISLRASLTVHLLRD------------DFRAEPKDTRVASGETALLECGPPKGQP--EPTLHWKKN  199 (633)
Q Consensus       135 ~G~Y~C~~~n~~g~-~s~~~~l~V~~~~p------------~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~i~W~~~  199 (633)
                      +|.|.|.+.|..+. ....+.|.|..++.            .....+....+.+|++++|.|.+ .+.|  .+.+.|+|+
T Consensus        83 ~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~-~g~~~~~~~v~W~k~  161 (242)
T 2znx_A           83 FGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSV-TGDSITSDYXSXIRK  161 (242)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEE-ESSCGGGSCEEEEEE
T ss_pred             CEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEE-EccccCCcceeeEee
Confidence            99999999987543 23445677776521            12222233457778888888873 4444  467888774

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.66  E-value=6.9e-16  Score=140.26  Aligned_cols=145  Identities=20%  Similarity=0.227  Sum_probs=108.7

Q ss_pred             cCCCCCCCCCCccccccceeeEEEEecccCC-CCCceEEe----eCceEEEcCCCC--CCeEEEEEEe------------
Q psy15127          7 TNHAHPMSSPRAEIEPATRTNRVSISGDPGF-DSRRSRSI----FGSVLGARGALS--DDQWKLIAKE------------   67 (633)
Q Consensus         7 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~L~i~~v~~--~G~Y~C~a~~------------   67 (633)
                      +.|......|.+.|+|+..+      |.+.. ...++.+.    .++.|.|.+++.  +|.|+|.+.+            
T Consensus        22 l~C~~~~~~~~~~v~W~~~~------g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l   95 (191)
T 1epf_A           22 FLCQVAGDAKDKDISWFSPN------GEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNV   95 (191)
T ss_dssp             EEEEECCCSCCCEEEEECTT------SCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEE
T ss_pred             EEEECCCCCCCceEEEEeCC------CccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            33443333346677755422      22222 33455543    246899999998  9999999988            


Q ss_pred             -cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCC---CCCeEEcccceEEEccCCCCCCeEEEEEEE
Q psy15127         68 -ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP---TGRAKILDDRSLQIENVGPQDEGLYICDVE  143 (633)
Q Consensus        68 -v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~---~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~  143 (633)
                       +..+|.+...+....+.+|+.+.|.|.+.+.|.|.+.|++++..+.   ..+.....++.|.|.+++.+|+|.|+|.|.
T Consensus        96 ~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  175 (191)
T 1epf_A           96 KIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGR  175 (191)
T ss_dssp             EEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEE
T ss_pred             EeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCCeEEECCCChhhCEEEEEEEE
Confidence             4567888888888899999999999999999999999999998874   335566667799999999999999999999


Q ss_pred             eCCceEEEEEEEEE
Q psy15127        144 NLVGSISLRASLTV  157 (633)
Q Consensus       144 n~~g~~s~~~~l~V  157 (633)
                      |..+.......+.|
T Consensus       176 n~~~~~~~~~~i~v  189 (191)
T 1epf_A          176 ILARGEINFKDIQV  189 (191)
T ss_dssp             EGGGTEEEEEEEEE
T ss_pred             EecceeEEEEEEEE
Confidence            98865444444443

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.66  E-value=2e-15  Score=140.15  Aligned_cols=111  Identities=25%  Similarity=0.328  Sum_probs=86.5

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC---CeEEc---ccceEEEccCCCCCCeEEEEEE
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKIL---DDRSLQIENVGPQDEGLYICDV  142 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~---~~~~~---~~~~L~i~~v~~~d~G~Y~C~~  142 (633)
                      ..+|.| ..|.++.+.+|+.+.|.|.+.|.|.|.|+|+|+|..+...   +..+.   ..+.|.|.+++.+|+|.|+|.|
T Consensus        17 ~~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a   95 (215)
T 3mtr_A           17 MYAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTA   95 (215)
T ss_dssp             CEEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEE
T ss_pred             ecCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEE
Confidence            456777 5777889999999999999999999999999999988654   22332   2468999999999999999999


Q ss_pred             EeCCceEEEEEEEEEEeeccccccCCCceE-EecCCcEEEEEe
Q psy15127        143 ENLVGSISLRASLTVHLLRDDFRAEPKDTR-VASGETALLECG  184 (633)
Q Consensus       143 ~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~-~~~g~~~~l~C~  184 (633)
                      .|..|..+..+.|.|..+ |..   |.... ...+..+.|.|.
T Consensus        96 ~n~~g~~~~~~~l~v~~~-P~~---p~~~~~~~~~~~~~l~w~  134 (215)
T 3mtr_A           96 VNRIGQESLEFILVQADT-PSS---PSIDQVEPYSSTAQVQFD  134 (215)
T ss_dssp             ECSSCEEEEEEEEEECCC-CCC---CEEEEEEEETTEEEEEEE
T ss_pred             EECCCceEEEEEEEECCC-CCC---CcceEEEEecceEEEEEe
Confidence            999999988899988876 332   22221 234566677775

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.66  E-value=1.7e-15  Score=137.95  Aligned_cols=111  Identities=27%  Similarity=0.366  Sum_probs=95.0

Q ss_pred             ceEEEcCCCC--CCeEEEEEEe------------cC---cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCc
Q psy15127         48 SVLGARGALS--DDQWKLIAKE------------AL---IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG  110 (633)
Q Consensus        48 ~~L~i~~v~~--~G~Y~C~a~~------------v~---~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~  110 (633)
                      ..|.|.+++.  +|.|+|.+.+            +.   .+|.+...+....+.+|+.+.|.|.+.+.|.+.++|++++.
T Consensus        63 ~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~  142 (194)
T 2a38_A           63 AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGA  142 (194)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTE
T ss_pred             EEEEECCCCcccCEEEEEEEEcCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCE
Confidence            4799999998  9999999987            22   56778888888899999999999999999999999999999


Q ss_pred             cCCCCC-eEEccc---ceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy15127        111 KMPTGR-AKILDD---RSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH  158 (633)
Q Consensus       111 ~i~~~~-~~~~~~---~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~  158 (633)
                      .+..+. .....+   ..|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus       143 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  194 (194)
T 2a38_A          143 EIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ  194 (194)
T ss_dssp             ECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             ECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence            886543 333322   279999999999999999999999998888888773

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A

Probab=99.66  E-value=8.4e-16  Score=149.95  Aligned_cols=177  Identities=13%  Similarity=0.190  Sum_probs=118.9

Q ss_pred             CCCCCCcEEEEe-----eCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEE
Q psy15127        410 PGPPAAPVILNT-----TRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMF  484 (633)
Q Consensus       410 p~~p~~~~~~~~-----~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~  484 (633)
                      |+.|..+.....     ..+++.|+|+++.... +++.+.+|.|+|+..+..  +.    ........+.+|.|++.|.|
T Consensus         4 Ps~p~~~~~~~~~~~~~g~~sv~l~W~p~~~~~-~~g~i~~Y~V~~~~~~~~--~~----~~~~~~~~~~~l~p~t~Y~~   76 (290)
T 3l5i_A            4 PSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFE-ANGKILDYEVTLTRWKSH--LQ----NYTVNATKLTVNLTNDRYLA   76 (290)
T ss_dssp             CSSCCCEEEEEEECSSTTCEEEEEEECCCCHHH-HCSCEEEEEEEEEETTSC--CE----EEEESSSEEEEEECSSCEEE
T ss_pred             CCCCCceeEEecccccCCCceEEEEEccCCchh-cCCceEeEEEEEEeCCcC--ce----eEecCCcEEEEEcCCceEEE
Confidence            455555543322     3589999999854321 257899999999987532  22    11233457789999999999


Q ss_pred             EEEEEeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhh
Q psy15127        485 IVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARA  564 (633)
Q Consensus       485 ~v~a~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~  564 (633)
                      +|+|.|..|.|+++...  ..+....+..++..+               .+.... +++.|+|++|        .   +.
T Consensus        77 ~V~A~n~~G~s~~s~~~--~~~~~~~~~~p~~~~---------------~~~~~~-~si~l~W~~p--------~---~~  127 (290)
T 3l5i_A           77 TLTVRNLVGKSDAAVLT--IPACDFQATHPVMDL---------------KAFPKD-NMLWVEWTTP--------R---ES  127 (290)
T ss_dssp             EEEEEESSCBCCCEEEE--ECCTTCCCCCCCEEE---------------EEEEET-TEEEEEEECC--------S---SC
T ss_pred             EEEEEcCCCCCCCceEE--eecccccCCCcccee---------------EEEeCC-CeEEEEEeCC--------C---CC
Confidence            99999999999766321  111111222222221               444444 7999999954        1   28


Q ss_pred             hcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEecccccccccc
Q psy15127        565 RLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGAR  631 (633)
Q Consensus       565 i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~  631 (633)
                      +.+| .|+|+.......  ....|...      .......+++.+|+|++.|.|+|+|.|..|.|++
T Consensus       128 i~~Y-~v~~~~~~~~~~--~~~~~~~~------~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~g~g~~  185 (290)
T 3l5i_A          128 VKKY-ILEWCVLSDKAP--CITDWQQE------DGTVHRTYLRGNLAESKCYLITVTPVYADGPGSP  185 (290)
T ss_dssp             CCEE-EEEEEEECSSSC--CCCEEEEE------ETTCSEEECCSCCCTTCEEEEEEEEEETTEECCC
T ss_pred             CCcE-EEEEEECCCCCC--CCcCeEEc------cCCCcceEEecCcCCccEEEEEEEEEeCCccccc
Confidence            9999 999988765531  01134322      2345678889999999999999999999999875

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.65  E-value=5.9e-16  Score=144.13  Aligned_cols=126  Identities=19%  Similarity=0.258  Sum_probs=88.8

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCC--cc---C---------------CCCCeEEcc-----cceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDD--GK---M---------------PTGRAKILD-----DRSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~--~~---i---------------~~~~~~~~~-----~~~L~i~  128 (633)
                      .+|..+.+.+|++++|.|.+.+.+  .+.+.|+|+.  ..   +               ..+++....     +..|+|.
T Consensus         5 ~q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (220)
T 2fbj_H            5 LESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMS   84 (220)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEEC
T ss_pred             ecCCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEEC
Confidence            345678899999999999998765  5789999853  21   1               123444432     2489999


Q ss_pred             cCCCCCCeEEEEEEEeCCce---EEEEEEEEEEee---ccccccCCCceEEecCCcEEEEEeCCCCCCC--CeEEEEECC
Q psy15127        129 NVGPQDEGLYICDVENLVGS---ISLRASLTVHLL---RDDFRAEPKDTRVASGETALLECGPPKGQPE--PTLHWKKNG  200 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~n~~g~---~s~~~~l~V~~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~i~W~~~~  200 (633)
                      +++.+|+|.|.|.+.+..+.   ....+.|.|...   +|.+...+ ...+..|+.++|.|.+....|.  +.+.|++++
T Consensus        85 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~  163 (220)
T 2fbj_H           85 KVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSG  163 (220)
T ss_dssp             SCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCC
T ss_pred             CCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecCC
Confidence            99999999999999987542   223457777742   24443333 3345789999999995444476  799999987


Q ss_pred             EE
Q psy15127        201 QF  202 (633)
Q Consensus       201 ~~  202 (633)
                      ..
T Consensus       164 ~~  165 (220)
T 2fbj_H          164 KD  165 (220)
T ss_dssp             SS
T ss_pred             Ee
Confidence            54

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.65  E-value=3.1e-16  Score=147.02  Aligned_cols=126  Identities=20%  Similarity=0.318  Sum_probs=86.1

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCC----CeEEEEeCC--ccCC-----------------CCCeEEcc-----cceEEE
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPL----PTILWRRDD--GKMP-----------------TGRAKILD-----DRSLQI  127 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~----p~i~W~~~~--~~i~-----------------~~~~~~~~-----~~~L~i  127 (633)
                      .+|..+.+.+|++++|.|.+.+.+.    +.+.|+|+.  ..+.                 .+++....     +..|.|
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   84 (228)
T 3bae_H            5 KESGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKI   84 (228)
T ss_dssp             EEECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEE
T ss_pred             eCCCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEE
Confidence            3467788999999999999988764    789999853  2210                 12333332     258999


Q ss_pred             ccCCCCCCeEEEEEEEeCCc------e---EEEEEEEEEEee---ccccccCCCceEEecCCcEEEEEeCCCCCCCC-eE
Q psy15127        128 ENVGPQDEGLYICDVENLVG------S---ISLRASLTVHLL---RDDFRAEPKDTRVASGETALLECGPPKGQPEP-TL  194 (633)
Q Consensus       128 ~~v~~~d~G~Y~C~~~n~~g------~---~s~~~~l~V~~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i  194 (633)
                      .+++.+|+|.|.|.+.+..|      .   ....+.|.|...   +|.+...+....+.+|+.+.|.|.+....|.+ .+
T Consensus        85 ~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v  164 (228)
T 3bae_H           85 TSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTL  164 (228)
T ss_dssp             CSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEE
T ss_pred             cCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEE
Confidence            99999999999999998764      1   123467777741   24443333233467899999999954344777 99


Q ss_pred             EEEECCE
Q psy15127        195 HWKKNGQ  201 (633)
Q Consensus       195 ~W~~~~~  201 (633)
                      .|++++.
T Consensus       165 ~W~~~~~  171 (228)
T 3bae_H          165 TWNSGSL  171 (228)
T ss_dssp             EEGGGTC
T ss_pred             EEeeCCc
Confidence            9998765

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E

Probab=99.65  E-value=2.4e-16  Score=176.88  Aligned_cols=140  Identities=17%  Similarity=0.213  Sum_probs=110.0

Q ss_pred             CCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEec-------------CCCCeEEEEEee----------e
Q psy15127        411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSD-------------LQTGWVVAAHRI----------T  467 (633)
Q Consensus       411 ~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~-------------~~~~~~~~~~~~----------~  467 (633)
                      ..|..+.+..++++++.|+|.+|....  +.++.+|.|+|+...             ....|.......          .
T Consensus       470 ~~~~~l~v~~~s~~sv~LsW~~p~~~~--~~~i~gY~V~y~~~~~~n~t~~~~~~~c~~~~w~~~~~~~~~~~~~~~~~~  547 (897)
T 2dtg_E          470 NELLKFSYIRTSFDKILLRWEPYWPPD--FRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQN  547 (897)
T ss_dssp             CCBCCCSEEEECSSCEEEECCCCCSSS--CCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSS
T ss_pred             cceeEEEEEEEecCeEEEEecCCCCCC--CceeeeEEEEEEeCCCCCcccccCccccCCCcceEEecCCCcccccccccc
Confidence            445677888899999999999997542  468999999998651             123465322211          1


Q ss_pred             eceEEEecCCCCCeEEEEEEE-Eecccc----CCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccce
Q psy15127        468 STSITVSDLKPDTSYMFIVRA-ENSHGL----GIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTA  542 (633)
Q Consensus       468 ~~~~~i~~L~p~~~Y~~~v~a-~n~~G~----g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  542 (633)
                      ...++|.+|.|++.|.|+|+| .|..|.    |++|... .++|...+|++|..+                .+...++++
T Consensus       548 ~~~~~l~~L~P~T~Y~~~V~A~~n~~G~~~~~~~~S~~v-~~~T~~~~Ps~P~~l----------------~~~~~s~ts  610 (897)
T 2dtg_E          548 HPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDII-YVQTDATNPSVPLDP----------------ISVSNSSSQ  610 (897)
T ss_dssp             CCEEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCB-CCBCCCCCCCCCEEE----------------EEEECSSSC
T ss_pred             ccceEeCCCCCCcEEEEEEEEEEeccCCccccCCccceE-EEECCCCCCcCCcce----------------EEEeCCCCE
Confidence            477999999999999999999 999998    6777665 578888888877766                788899999


Q ss_pred             EEEEEEEecCCCcccccchhhhhcceeEEEEEEcCC
Q psy15127        543 VRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIP  578 (633)
Q Consensus       543 i~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~  578 (633)
                      |.|+|++|        ...+|.|++| .|+|+....
T Consensus       611 I~LsW~pP--------~~~nG~I~~Y-~V~~~~~~~  637 (897)
T 2dtg_E          611 IILKWKPP--------SDPNGNITHY-LVFWERQAE  637 (897)
T ss_dssp             EEEEEECC--------CCSSSSCSEE-ECCEEEECC
T ss_pred             EEEEEeCC--------CCCCCCeeEE-EEEEEECCC
Confidence            99999955        5678889999 999987543

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.65  E-value=2.7e-16  Score=147.05  Aligned_cols=126  Identities=24%  Similarity=0.337  Sum_probs=88.7

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCC--ccC------------------CCCCeEEcc-----cceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDD--GKM------------------PTGRAKILD-----DRSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~--~~i------------------~~~~~~~~~-----~~~L~i~  128 (633)
                      .+|..+.+.+|++++|.|.+.+.+  .+.+.|+|+.  ..+                  ..+++....     +..|.|.
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (225)
T 1op3_H            5 VESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMH   84 (225)
T ss_dssp             EEECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             EcCCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEEC
Confidence            446678899999999999998766  6789999853  211                  123444432     3589999


Q ss_pred             cCCCCCCeEEEEEEEeCCc-----e---EEEEEEEEEEee---cccccc-CCCceEEecCCcEEEEEeCCCCCCCC-eEE
Q psy15127        129 NVGPQDEGLYICDVENLVG-----S---ISLRASLTVHLL---RDDFRA-EPKDTRVASGETALLECGPPKGQPEP-TLH  195 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~n~~g-----~---~s~~~~l~V~~~---~p~~~~-~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~  195 (633)
                      +++.+|+|.|.|.+.+..+     .   ....+.|.|...   +|.+.. .+.. .+.+|+.+.|.|.+....|.+ .|.
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~  163 (225)
T 1op3_H           85 KMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTVS  163 (225)
T ss_dssp             SCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCT-TCCCCCEEEEEEEEEEEBSSCCEEE
T ss_pred             CCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccc-cccCCCcEEEEEEEEeEECCCeEEE
Confidence            9999999999999998764     1   223467888752   133332 3322 356899999999954334766 999


Q ss_pred             EEECCEE
Q psy15127        196 WKKNGQF  202 (633)
Q Consensus       196 W~~~~~~  202 (633)
                      |++++..
T Consensus       164 W~~~~~~  170 (225)
T 1op3_H          164 WNSGALT  170 (225)
T ss_dssp             CCTTSCC
T ss_pred             EecCCCc
Confidence            9988753

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.65  E-value=6.8e-16  Score=166.41  Aligned_cols=127  Identities=21%  Similarity=0.368  Sum_probs=98.9

Q ss_pred             CceEEEcCCeEEEEEEE-eccCCCeEEEEeCCccCC-------------CCCeEEcccceEEEccCCCCCCeEEEEEEEe
Q psy15127         79 SDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMP-------------TGRAKILDDRSLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus        79 ~~~~~~~G~~~~L~C~~-~~~p~p~i~W~~~~~~i~-------------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                      ....+.+|++++|.|.+ .+.|.+.|+|+|++..+.             .++.....+++|.|.+++.+|+|.|+|.+.|
T Consensus       374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n  453 (581)
T 3o3u_N          374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMN  453 (581)
T ss_dssp             EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEEC
T ss_pred             cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEc
Confidence            34678999999999999 778899999999876331             2345556667999999999999999999999


Q ss_pred             CCceE-EEEEEEEEEeeccccccCCCceEEecCCcE-EEEEeCCCCCCCCeEEEEECCEEecc
Q psy15127        145 LVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETA-LLECGPPKGQPEPTLHWKKNGQFIDL  205 (633)
Q Consensus       145 ~~g~~-s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~-~l~C~~~~~~p~~~i~W~~~~~~~~~  205 (633)
                      ..+.. +..+.|.|..++....+.+....+.+|+.. .|.|.+..+.|.+.|.|+++|..+..
T Consensus       454 ~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~  516 (581)
T 3o3u_N          454 RNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVP  516 (581)
T ss_dssp             TTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCT
T ss_pred             CCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCC
Confidence            98886 788999998863333333334446666655 56999544479999999999998865

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}

Probab=99.65  E-value=1.1e-14  Score=150.01  Aligned_cols=116  Identities=19%  Similarity=0.198  Sum_probs=82.4

Q ss_pred             CCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEE
Q psy15127        368 DSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYT  447 (633)
Q Consensus       368 d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~  447 (633)
                      ..|.|+|.|.|..|....  .+.+...           ....|.+|..+.+.....+.+.|+|++|...   ++.++.|.
T Consensus       358 t~Y~f~V~A~N~~G~~~S--~~~~~~~-----------~~v~P~PP~nl~v~~~s~~sl~LsW~pP~~~---~g~~l~Ye  421 (488)
T 2q7n_A          358 EIHNFTLTGRNPLGQAQS--AVVINVT-----------ERVAPHDPTSLKVKDINSTVVTFSWYLPGNF---TKINLLCQ  421 (488)
T ss_dssp             CCCEEEEEEEETTEEEEE--EEECCGG-----------GTBCCCCCEEEEEEECSTTCEEEEEEEEEEC---SSSEEEEE
T ss_pred             cEEEEEEEEEeCCCCccc--eEEEEec-----------CCCCCCCCeEEEEEecCCCEEEEEEeCCCCC---CCcceEEE
Confidence            567889999999997433  3333211           1134677888887777889999999999643   46789999


Q ss_pred             EEEEEecCCCCeEEEEEee--eeceE--EEecCCCCCeEEEEEEEEeccccCCCCCCC
Q psy15127        448 VEYFSSDLQTGWVVAAHRI--TSTSI--TVSDLKPDTSYMFIVRAENSHGLGIPSPVS  501 (633)
Q Consensus       448 v~~~~~~~~~~~~~~~~~~--~~~~~--~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~  501 (633)
                      |+|+..+. ..|.......  ....+  +|.+|.|++.|.|+|+|.| .|.|.+|.++
T Consensus       422 V~Yr~~~~-~~w~~~~~~~~~~~~~~~v~l~~L~P~T~Y~~rVRA~~-~g~G~WS~WS  477 (488)
T 2q7n_A          422 IEICKANS-KKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSS-KTFWKWSRWS  477 (488)
T ss_dssp             EEEBCTTS-CCEEEEEEEECCEEEEEEEEECSCCSSCCBBCCEEEEE-SSCSSCCCCC
T ss_pred             EEEEECCC-CCceEEEEEecCCCcEEEEEeCCCCCCceEEEEEEEEE-CCCCCCCCCc
Confidence            99998753 4553211111  13445  9999999999999999999 8987555544

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.64  E-value=1.7e-15  Score=140.17  Aligned_cols=113  Identities=29%  Similarity=0.341  Sum_probs=91.9

Q ss_pred             ceEEEcCCC-C--CCeEEEEEEe------------cC-------cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEE
Q psy15127         48 SVLGARGAL-S--DDQWKLIAKE------------AL-------IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILW  105 (633)
Q Consensus        48 ~~L~i~~v~-~--~G~Y~C~a~~------------v~-------~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W  105 (633)
                      ..|.|.+++ .  +|.|+|.|.|            +.       ..|.+...+....+.+|+.+.|.|.+.|.|.|.+.|
T Consensus        63 ~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W  142 (212)
T 2yd6_A           63 SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITW  142 (212)
T ss_dssp             EEEEECSCCTTTTCEEEEEEEEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEE
T ss_pred             eEEEEeccCCCCCCeEEEEEEEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEE
Confidence            469999994 5  9999999988            22       227788888888899999999999999999999999


Q ss_pred             EeCCccCCCC----CeEEcc---cceEEEccCCCCCCeEEEEEEEeCCceE-EEEEEEEEEee
Q psy15127        106 RRDDGKMPTG----RAKILD---DRSLQIENVGPQDEGLYICDVENLVGSI-SLRASLTVHLL  160 (633)
Q Consensus       106 ~~~~~~i~~~----~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n~~g~~-s~~~~l~V~~~  160 (633)
                      +|++..+...    +.....   .+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|...
T Consensus       143 ~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~  205 (212)
T 2yd6_A          143 FKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGT  205 (212)
T ss_dssp             EETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred             EECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEec
Confidence            9999988643    333322   3789999999999999999999999985 56678888765

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.64  E-value=1.7e-15  Score=138.31  Aligned_cols=131  Identities=15%  Similarity=0.200  Sum_probs=102.2

Q ss_pred             EEEecccCCCCCceEEeeCc---eEEEcCCCC--CCeEEEEEEe------------cCcCCeeeeC---CCceEEEcCCe
Q psy15127         29 VSISGDPGFDSRRSRSIFGS---VLGARGALS--DDQWKLIAKE------------ALIKPFPISE---PSDATVLSGSV   88 (633)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~--~G~Y~C~a~~------------v~~~p~~~~~---~~~~~~~~G~~   88 (633)
                      |..++.+...+.++.+..++   +|.|.+++.  +|.|+|.+.+            +..+|.+...   +....+.+|+.
T Consensus        41 W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~  120 (197)
T 3lcy_A           41 WYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGST  120 (197)
T ss_dssp             EEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSC
T ss_pred             EEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCe
Confidence            33445555556677666655   799999998  9999999988            3344444322   34567889999


Q ss_pred             EEEEEEEeccCCCeEEEEeCCccCCCCCeEEc-cc---ceEEEccCCC-CCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy15127         89 VEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL-DD---RSLQIENVGP-QDEGLYICDVENLVGSISLRASLTVHL  159 (633)
Q Consensus        89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~-~~---~~L~i~~v~~-~d~G~Y~C~~~n~~g~~s~~~~l~V~~  159 (633)
                      +.|.|.+.+.|.|.+.|++++..+..+..... ..   ..|.|.++.. +|+|.|+|.|.|..|..+..+.|.|..
T Consensus       121 ~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          121 LRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             EEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             EEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence            99999999999999999999998876543332 22   6799999995 899999999999999999998888864

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.64  E-value=1.8e-15  Score=145.05  Aligned_cols=128  Identities=17%  Similarity=0.248  Sum_probs=89.2

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccC------CCeEEEEeCC--ccC-------------CCCCeEEcc---cceEE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDP------LPTILWRRDD--GKM-------------PTGRAKILD---DRSLQ  126 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p------~p~i~W~~~~--~~i-------------~~~~~~~~~---~~~L~  126 (633)
                      .+.+...|..+.+.+|++++|.|.+.+.+      .+.+.|+|+.  ..+             ..+++....   ...|+
T Consensus         5 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~   84 (264)
T 2gjj_A            5 DIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLT   84 (264)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred             ccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEE
Confidence            35677778889999999999999998876      6789999952  221             023444332   34899


Q ss_pred             EccCCCCCCeEEEEEEEeCCce-EEEEEEEEEEeec-----------------ccc-ccCCCceEEecCCcEEEEEeCCC
Q psy15127        127 IENVGPQDEGLYICDVENLVGS-ISLRASLTVHLLR-----------------DDF-RAEPKDTRVASGETALLECGPPK  187 (633)
Q Consensus       127 i~~v~~~d~G~Y~C~~~n~~g~-~s~~~~l~V~~~~-----------------p~~-~~~~~~~~~~~g~~~~l~C~~~~  187 (633)
                      |.+++.+|+|.|.|.+.+..+. ....+.|.|..++                 +.+ ...+....+.+|++++|.|.+ .
T Consensus        85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~-~  163 (264)
T 2gjj_A           85 IGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKA-S  163 (264)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEE-E
T ss_pred             ECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEE-e
Confidence            9999999999999999887543 2344577787651                 122 122233467788888888884 4


Q ss_pred             CCC--CCeEEEEEC
Q psy15127        188 GQP--EPTLHWKKN  199 (633)
Q Consensus       188 ~~p--~~~i~W~~~  199 (633)
                      +.+  .+.+.|+|+
T Consensus       164 ~~~~~~~~v~W~r~  177 (264)
T 2gjj_A          164 GYSFTGYFINWVKK  177 (264)
T ss_dssp             SSCGGGSEEEEEEE
T ss_pred             CCccCCeEEEEEEE
Confidence            444  368888875

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.64  E-value=3.1e-16  Score=148.95  Aligned_cols=132  Identities=23%  Similarity=0.340  Sum_probs=93.8

Q ss_pred             eeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEe----------------CCccCCC----CCeEEcc----cceEEEc
Q psy15127         73 FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRR----------------DDGKMPT----GRAKILD----DRSLQIE  128 (633)
Q Consensus        73 ~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~----------------~~~~i~~----~~~~~~~----~~~L~i~  128 (633)
                      .+...|..+.+.+|++++|.|.+.+.+.+.|.|+|                ++.....    +++....    +.+|.|.
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~   82 (246)
T 4dzb_B            3 VVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVT   82 (246)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEEC
T ss_pred             ccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEEC
Confidence            45677888899999999999999988889999999                2222211    2333322    3479999


Q ss_pred             cCCCCCCeEEEEEEEeCCc----eEEEEEEEEEEe-----eccccc-cCCCceEEecCCcEEEEEeCCCCCCC-C-eEEE
Q psy15127        129 NVGPQDEGLYICDVENLVG----SISLRASLTVHL-----LRDDFR-AEPKDTRVASGETALLECGPPKGQPE-P-TLHW  196 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~n~~g----~~s~~~~l~V~~-----~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~~p~-~-~i~W  196 (633)
                      +++.+|+|.|.|.+.+..+    .....+.|.|..     .+|.+. ..+....+.+|+.++|.|.+ .+.|+ + .+.|
T Consensus        83 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~-~g~~p~~~~v~W  161 (246)
T 4dzb_B           83 SAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLA-TGFYPDHVELSW  161 (246)
T ss_dssp             SCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEE-EEEBSSCEEEEE
T ss_pred             CCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEE-ccCcCCceEEEE
Confidence            9999999999999987643    233455677764     123332 33444455679999999994 55443 3 9999


Q ss_pred             EECCEEecc
Q psy15127        197 KKNGQFIDL  205 (633)
Q Consensus       197 ~~~~~~~~~  205 (633)
                      +++|..+..
T Consensus       162 ~k~g~~l~~  170 (246)
T 4dzb_B          162 WVNGKEVHS  170 (246)
T ss_dssp             EETTEEECT
T ss_pred             EECCEECCC
Confidence            999987753

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.64  E-value=2.8e-15  Score=135.02  Aligned_cols=132  Identities=20%  Similarity=0.292  Sum_probs=103.5

Q ss_pred             CCCCccccccceeeEEEEecccCCCCCceEEee-----CceEEEcCCCC--CCeEEEEEEe-------------cCcCCe
Q psy15127         14 SSPRAEIEPATRTNRVSISGDPGFDSRRSRSIF-----GSVLGARGALS--DDQWKLIAKE-------------ALIKPF   73 (633)
Q Consensus        14 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~L~i~~v~~--~G~Y~C~a~~-------------v~~~p~   73 (633)
                      +.|.+.|+|+       .+|.+.....+..+..     ++.|.|.+++.  +|.|+|.+.+             +..+|.
T Consensus        28 ~~p~~~v~W~-------k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~  100 (182)
T 1rhf_A           28 GMEEPDIQWV-------KDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPF  100 (182)
T ss_dssp             SCSSCCEEEE-------ETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEECSCE
T ss_pred             CCCCCeEEEE-------ECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEEEEEEEEEecCCe
Confidence            3466667743       3444444444433332     26899999998  9999999987             566788


Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCC-eEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEE-E
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSIS-L  151 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p-~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s-~  151 (633)
                      +...+....+.+|+.+.|.|.+.+.|.| .+.|++++..+.....   ....|.|.++  +|+|.|+|.|.|..|... .
T Consensus       101 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~---~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~  175 (182)
T 1rhf_A          101 FTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP---SPSVLNVTGV--TQSTMFSCEAHNLKGLASSR  175 (182)
T ss_dssp             EEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE---SSEEEEECCC--SSCEEEEEEEEETTEEEECC
T ss_pred             EEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC---CceEEEEecc--ccCeEEEEEEECCCCCcccc
Confidence            8888888899999999999999999999 9999999998865432   5578999998  589999999999999864 4


Q ss_pred             EEEEEE
Q psy15127        152 RASLTV  157 (633)
Q Consensus       152 ~~~l~V  157 (633)
                      .+.|.|
T Consensus       176 ~~~l~V  181 (182)
T 1rhf_A          176 TATVHL  181 (182)
T ss_dssp             CEEEEE
T ss_pred             eEEEEe
Confidence            777766

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.64  E-value=1.2e-15  Score=142.30  Aligned_cols=129  Identities=19%  Similarity=0.263  Sum_probs=88.3

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCC--cc---C---------------CCCCeEEcc-----cceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDD--GK---M---------------PTGRAKILD-----DRSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~--~~---i---------------~~~~~~~~~-----~~~L~i~  128 (633)
                      .+|..+.+.+|++++|.|.+.+.+  .+.+.|+|+.  ..   +               ..+|+....     +..|.|.
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (223)
T 1dee_B            5 VESGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMN   84 (223)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             EcCCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEEC
Confidence            345678899999999999998765  4689999853  21   1               023444432     2479999


Q ss_pred             cCCCCCCeEEEEEEEeCCc------eEEEEEEEEEEee---ccccccCCCceEEecCCcEEEEEeCCCCCCCC-eEEEEE
Q psy15127        129 NVGPQDEGLYICDVENLVG------SISLRASLTVHLL---RDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKK  198 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~n~~g------~~s~~~~l~V~~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~  198 (633)
                      +++.+|+|.|.|.+.+..+      .....+.|.|...   +|.+...+....+.+|+.++|.|.+....|.+ .+.|++
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  164 (223)
T 1dee_B           85 SLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKY  164 (223)
T ss_dssp             SCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             CCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEc
Confidence            9999999999999998653      1223457888741   23333221122356899999999954444776 999999


Q ss_pred             -CCEEec
Q psy15127        199 -NGQFID  204 (633)
Q Consensus       199 -~~~~~~  204 (633)
                       +|..+.
T Consensus       165 ~~g~~l~  171 (223)
T 1dee_B          165 KNNSDIS  171 (223)
T ss_dssp             TTSCBCS
T ss_pred             cCCCccc
Confidence             776553

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.64  E-value=6.2e-16  Score=143.28  Aligned_cols=122  Identities=20%  Similarity=0.239  Sum_probs=95.6

Q ss_pred             CCceEEee------CceEEEcCCCC--CCeEEEEEEe------------cCcCCeeeeCCCceEEEcCCeEEEEEEE-ec
Q psy15127         39 SRRSRSIF------GSVLGARGALS--DDQWKLIAKE------------ALIKPFPISEPSDATVLSGSVVEFVCRV-GG   97 (633)
Q Consensus        39 ~~~~~~~~------~~~L~i~~v~~--~G~Y~C~a~~------------v~~~p~~~~~~~~~~~~~G~~~~L~C~~-~~   97 (633)
                      ..|+.+..      +++|.|.+++.  +|.|+|.+.+            |..+|.+...+....+.+|+.++|.|.+ .+
T Consensus        69 ~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g  148 (214)
T 3jz7_A           69 KGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEG  148 (214)
T ss_dssp             TTTEEESCSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBC
T ss_pred             ccceEEeccCccCCcccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCC
Confidence            34555543      57899999998  9999999988            4455554444444457889999999999 78


Q ss_pred             cCCCeEEEEeCCc--cCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEee
Q psy15127         98 DPLPTILWRRDDG--KMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLL  160 (633)
Q Consensus        98 ~p~p~i~W~~~~~--~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~  160 (633)
                      .|.+.+.|++++.  .+.........++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..|
T Consensus       149 ~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  213 (214)
T 3jz7_A          149 SLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP  213 (214)
T ss_dssp             CSSCEEEEEECSTTCCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCC
T ss_pred             CCCCEEEEEECCCCCccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCC
Confidence            9999999999544  33333333334579999999999999999999999999999998888754

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.63  E-value=7.2e-17  Score=148.80  Aligned_cols=130  Identities=18%  Similarity=0.158  Sum_probs=88.7

Q ss_pred             eeeCCCceE-EEcCCeEEEEEEEeccC----CCeEEEEeCCccCCCCC---------eEEcccceEEEccCCCCCCeEEE
Q psy15127         74 PISEPSDAT-VLSGSVVEFVCRVGGDP----LPTILWRRDDGKMPTGR---------AKILDDRSLQIENVGPQDEGLYI  139 (633)
Q Consensus        74 ~~~~~~~~~-~~~G~~~~L~C~~~~~p----~p~i~W~~~~~~i~~~~---------~~~~~~~~L~i~~v~~~d~G~Y~  139 (633)
                      ++..|.... +.+|++++|.|.+.+.+    .+.|+|+|++..+....         ........|.|.+++.+|+|.|+
T Consensus         5 ~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~   84 (207)
T 2vol_A            5 FIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFK   84 (207)
T ss_dssp             EEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEE
T ss_pred             EEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEE
Confidence            344555444 88999999999998874    24899999997664321         01112347999999999999999


Q ss_pred             EEEEeCCceE--EEEEEE--EEEeeccccccCCCceEEecCCcEEEEEeCCCCCCC-CeEEEEECCEEec
Q psy15127        140 CDVENLVGSI--SLRASL--TVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPE-PTLHWKKNGQFID  204 (633)
Q Consensus       140 C~~~n~~g~~--s~~~~l--~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~i~W~~~~~~~~  204 (633)
                      |.|.|..+..  ++.+.+  .+..+ |.+.+.+.......|+.+.|.|.+....|. ..+.|+++|..+.
T Consensus        85 C~a~~~~~~~~~~~~v~~~~~~~~~-P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~  153 (207)
T 2vol_A           85 CRVNSAAFPAPIEKTISKTKGRPKA-PQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAE  153 (207)
T ss_dssp             EEEECTTCSSCEEEEECCCCCCCBC-CEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             EEEEccCCCCceEEEeccCCCCCcC-CeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEecc
Confidence            9999987753  333333  33334 555444333223369999999995433555 4899999988653

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.63  E-value=2.4e-15  Score=137.39  Aligned_cols=138  Identities=19%  Similarity=0.251  Sum_probs=103.0

Q ss_pred             CCCCccccccceeeEEEEecccCCC-CCceEEee--Cc--eEEEcCCCC--CCeEEEEEEe------------cCcCCee
Q psy15127         14 SSPRAEIEPATRTNRVSISGDPGFD-SRRSRSIF--GS--VLGARGALS--DDQWKLIAKE------------ALIKPFP   74 (633)
Q Consensus        14 ~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~--~L~i~~v~~--~G~Y~C~a~~------------v~~~p~~   74 (633)
                      +.|.+.|+|+.       +|.+... +.++.+..  ++  .|.|.+++.  +|.|+|.|.|            +..+|.+
T Consensus        30 ~~p~~~v~W~~-------~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~  102 (197)
T 2j8h_A           30 GHPKPIVKWYR-------QGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI  102 (197)
T ss_dssp             CSSCCEEEEEE-------TTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEEEEEE
T ss_pred             ecCCCEEEEEE-------CCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCceeEEEEEEEcCCCcC
Confidence            44556666433       3443332 34554432  33  899999999  9999999988            3333433


Q ss_pred             e-----eCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEc---ccceEEEcc-CCCCCCeEEEEEEEe
Q psy15127         75 I-----SEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKIL---DDRSLQIEN-VGPQDEGLYICDVEN  144 (633)
Q Consensus        75 ~-----~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~---~~~~L~i~~-v~~~d~G~Y~C~~~n  144 (633)
                      .     ..+....+.+|+.+.|.|.+.+.|.|.+.|+|++..+... +....   ....|.|.+ ++.+|+|.|+|.|.|
T Consensus       103 ~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N  182 (197)
T 2j8h_A          103 HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKN  182 (197)
T ss_dssp             CCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEE
T ss_pred             CCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEe
Confidence            2     2234567889999999999999999999999999988643 33332   236899999 999999999999999


Q ss_pred             CCceEEEEEEEEEE
Q psy15127        145 LVGSISLRASLTVH  158 (633)
Q Consensus       145 ~~g~~s~~~~l~V~  158 (633)
                      ..|..+..+.|.|.
T Consensus       183 ~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          183 RFGIDQKTVELDVA  196 (197)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCcEeEEEEEEEe
Confidence            99999988888886

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.63  E-value=2.2e-15  Score=120.14  Aligned_cols=90  Identities=30%  Similarity=0.469  Sum_probs=78.8

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC---CeEEcc---cceEEEccCCCCCCeEEEEEEE
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILD---DRSLQIENVGPQDEGLYICDVE  143 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~---~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~  143 (633)
                      .||.|...|.++.+.+|+.+.|.|.+.|.|.|.|+|+|+|..+...   +..+..   ..+|.|.+++.+|+|.|+|.|.
T Consensus         4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   83 (100)
T 3knb_A            4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLG   83 (100)
T ss_dssp             EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEE
Confidence            4788988999999999999999999999999999999999988643   333332   2479999999999999999999


Q ss_pred             eCCceEEEEEEEEEEe
Q psy15127        144 NLVGSISLRASLTVHL  159 (633)
Q Consensus       144 n~~g~~s~~~~l~V~~  159 (633)
                      |..|..+..+.|.|..
T Consensus        84 N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           84 NEFGSDSATVNIHIRS   99 (100)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             ECCCEEEEEEEEEEEE
Confidence            9999999999998874

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C*

Probab=99.63  E-value=9.4e-15  Score=144.04  Aligned_cols=186  Identities=11%  Similarity=0.031  Sum_probs=119.0

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEE---EEeeeeceEEEecCC----CCCe
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVA---AHRITSTSITVSDLK----PDTS  481 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~---~~~~~~~~~~i~~L~----p~~~  481 (633)
                      +|.+|..+.+.......+.++|.++...    +.+..|.|.|+..+.. .+..-   ........+.+..+.    .++.
T Consensus        97 pp~~P~~l~c~~~~~~~~~c~W~~~~~~----~~~~~Y~l~y~~~~~~-~~~~C~~~~~~~~~~~c~~~~~~~~~~~~~~  171 (314)
T 3bpo_C           97 PESAVTELQCIWHNLSYMKCSWLPGRNT----SPDTNYTLYYWHRSLE-KIHQCENIFREGQYFGCSFDLTKVKDSSFEQ  171 (314)
T ss_dssp             CCSSCEEEEEEEETTTEEEEEEECCC-------CCCCEEEEEEESSCS-SCEECCCEEEETTEEEEEEECCC--------
T ss_pred             CCCCCEeceEEECCCCeEEEEECCCCCC----CCCccEEEEEEeCCCC-ccccCcCeecCCCeEEEEECCCCccccceeE
Confidence            4567778888888889999999998753    3578899998876432 22211   111123567777665    4789


Q ss_pred             EEEEEEEEeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccch
Q psy15127        482 YMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDE  561 (633)
Q Consensus       482 Y~~~v~a~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~  561 (633)
                      |.|+|.|.|..|.+..+... +..+....|.+|.++                ++. +..+++.|+|++|        ...
T Consensus       172 y~~~V~a~n~~G~~~~~~~~-~~~~~~v~P~pP~~l----------------~~~-~~~~~l~lsW~~P--------~~~  225 (314)
T 3bpo_C          172 HSVQIMVKDNAGKIKPSFNI-VPLTSRVKPDPPHIK----------------NLS-FHNDDLYVQWENP--------QNF  225 (314)
T ss_dssp             CCEEEEEEETTSCSCCEEEE-ECSSSSEECCCCEEE----------------EEE-EETTEEEEEEECC--------TTC
T ss_pred             EEEEEEEEcCCCceecccEE-EehhheEeeCCCCEE----------------EEE-EcCCcEEEEEeCC--------Ccc
Confidence            99999999999998654321 111222346656555                565 6778999999965        223


Q ss_pred             hhhhcceeEEEEEEcCCCcccceeeeeecccee-------Ee-ecCCccceEEeeccccceeEEEEEeccccc----ccc
Q psy15127        562 ARARLGTKVVNLRELIPTASTAVRITWEKYNMA-------TV-MNAATTTSYTVTHLRKFTKYEFFLVPFFKT----VEG  629 (633)
Q Consensus       562 ~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~-------~~-~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~----g~g  629 (633)
                      ++.+.+| .|+|+..+...       |+.....       .+ ......++++|.+|+|++.|.|+|+|.+..    +.|
T Consensus       226 ~~~~l~Y-ev~y~~~~~~~-------w~~~~~~~~~c~~~~~~~~~~~~~~~~l~~L~p~t~Y~~qVra~~~~~~~~~~g  297 (314)
T 3bpo_C          226 ISRCLFY-EVEVNNSQTET-------HNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYEDDK  297 (314)
T ss_dssp             CGGGEEE-EEEEEC--CCC-------EEEEEESCCCCCCTTSSCCCSSEEEEEEESCCTTSCEEEEEEEEECTTTSCCCC
T ss_pred             CCceEEE-EEEEEECCCCc-------ceEEecccccccccccccccCCceEEEEccCCCCCEEEEEEEeeecccccCCCC
Confidence            4557899 99999876543       6432110       00 012357889999999999999999999963    355


Q ss_pred             ccCC
Q psy15127        630 ARLD  633 (633)
Q Consensus       630 ~~s~  633 (633)
                      .+|+
T Consensus       298 ~WS~  301 (314)
T 3bpo_C          298 LWSN  301 (314)
T ss_dssp             CCCC
T ss_pred             eeCC
Confidence            5443

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.62  E-value=4.8e-15  Score=144.31  Aligned_cols=123  Identities=18%  Similarity=0.359  Sum_probs=86.4

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCC--ccCC------------------CCCeEEcc-----cceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDD--GKMP------------------TGRAKILD-----DRSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~--~~i~------------------~~~~~~~~-----~~~L~i~  128 (633)
                      ..|..+.+.+|++++|.|.+.+.+  .+.+.|+|+.  ..+.                  .+++....     ..+|+|.
T Consensus        27 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~  106 (291)
T 2gki_A           27 QQSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELS  106 (291)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEEC
T ss_pred             EcCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEEC
Confidence            456688899999999999998766  5789999953  2110                  13333321     2479999


Q ss_pred             cCCCCCCeEEEEEEEeCC-c--e--EEEEEEEEEEee---------------ccccccCCCceEEecCCcEEEEEeCCCC
Q psy15127        129 NVGPQDEGLYICDVENLV-G--S--ISLRASLTVHLL---------------RDDFRAEPKDTRVASGETALLECGPPKG  188 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~n~~-g--~--~s~~~~l~V~~~---------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~  188 (633)
                      +++.+|+|.|.|.+.+.. |  .  ....+.|.|..+               ++.+...|....+.+|++++|.|. ..+
T Consensus       107 ~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~-~~~  185 (291)
T 2gki_A          107 SLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCK-SSQ  185 (291)
T ss_dssp             SCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEE-ESS
T ss_pred             cCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEE-cCC
Confidence            999999999999999874 2  1  123346777661               233445566677888999999998 455


Q ss_pred             CCCC------eEEEEEC
Q psy15127        189 QPEP------TLHWKKN  199 (633)
Q Consensus       189 ~p~~------~i~W~~~  199 (633)
                      .+.+      .+.|+|+
T Consensus       186 ~~~~~~~~~~~v~W~k~  202 (291)
T 2gki_A          186 SLFNSRTRKNYLAWYQQ  202 (291)
T ss_dssp             CCEETTTTEECEEEEEE
T ss_pred             ccccccccceeEEEEEE
Confidence            5554      8889875

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.62  E-value=1.9e-16  Score=147.23  Aligned_cols=168  Identities=15%  Similarity=0.111  Sum_probs=108.8

Q ss_pred             CcCCeeeeCCCceE--EEcCCeEEEEEEEecc---CC-CeEEEEeCCccCCCCCe---------EEcccceEEEccCCCC
Q psy15127         69 LIKPFPISEPSDAT--VLSGSVVEFVCRVGGD---PL-PTILWRRDDGKMPTGRA---------KILDDRSLQIENVGPQ  133 (633)
Q Consensus        69 ~~~p~~~~~~~~~~--~~~G~~~~L~C~~~~~---p~-p~i~W~~~~~~i~~~~~---------~~~~~~~L~i~~v~~~  133 (633)
                      ..+|.+...|+...  +.+|++++|.|.+.+.   |. +.|+|+|++..+.....         .....+.|.|.+++.+
T Consensus         7 ~~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   86 (218)
T 2rgs_A            7 EGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWM   86 (218)
T ss_dssp             --CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHH
T ss_pred             CCCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcC
Confidence            45677766666655  7899999999999876   33 78999999987653211         1112357999999999


Q ss_pred             CCeEEEEEEEeCCceE--EEEEEE--EEEeeccccccCCCceEEecCCcEEEEEeCCCC-CCCC-eEEEEECCEEeccCC
Q psy15127        134 DEGLYICDVENLVGSI--SLRASL--TVHLLRDDFRAEPKDTRVASGETALLECGPPKG-QPEP-TLHWKKNGQFIDLES  207 (633)
Q Consensus       134 d~G~Y~C~~~n~~g~~--s~~~~l--~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~p~~-~i~W~~~~~~~~~~~  207 (633)
                      |+|.|+|.|.|..+..  ...+.+  .+..+ |.+.+.+.......|+.+.|.|.+ .| +|.+ .|.|+++|..+....
T Consensus        87 D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~-P~v~~~~~~~~~~~g~~~~L~C~~-~g~~P~~~~v~W~k~g~~~~~~~  164 (218)
T 2rgs_A           87 SGKEFKCKVNNKDLPSPIERTISKIKGLVRA-PQVYILPPPAEQLSRKDVSLTCLV-VGFNPGDISVEWTSNGHTEENYK  164 (218)
T ss_dssp             TTCCEEEEEEETTCSSCEEEEECCCCCCCBC-CEEEEECCCGGGTTSSEEEEEEEE-EEEBSSCCEEEEEETTEEECCEE
T ss_pred             CCCeEEEEEECCcCCCcceEEEeecCCCCCC-CEEEEECCChHHhcCCceEEEEEE-EeeeCCCcEEEEEECCEeccCce
Confidence            9999999999987643  333322  23333 554443333222359999999995 55 6765 999999999874321


Q ss_pred             Ce-eEEeccceeeeE---EE-------eeeEEEEeecCCCCC
Q psy15127        208 SK-SLDLSRRTLGWL---RV-------RPLYWNVARPRANLN  238 (633)
Q Consensus       208 ~~-~~~~~~~~~~~~---~~-------~g~y~C~a~~~~~~~  238 (633)
                      .. .....++.+.+.   .+       .|.|+|.|.|.....
T Consensus       165 ~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~~  206 (218)
T 2rgs_A          165 DTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLKN  206 (218)
T ss_dssp             ECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSGG
T ss_pred             ecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCCC
Confidence            11 111222222221   11       479999999987643

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.62  E-value=2.9e-15  Score=140.58  Aligned_cols=128  Identities=19%  Similarity=0.233  Sum_probs=83.7

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCC--ccC-----------------CCCCeEEcc-----cceEEEcc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDD--GKM-----------------PTGRAKILD-----DRSLQIEN  129 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~--~~i-----------------~~~~~~~~~-----~~~L~i~~  129 (633)
                      .+|..+.+.+|++++|.|.+.+.+  .+.+.|+|+.  ...                 ..+++....     +..|+|.+
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   84 (232)
T 1dn0_B            5 QQWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSS   84 (232)
T ss_dssp             EEECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             ECCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECC
Confidence            446678899999999999998764  5689999853  211                 023444432     23899999


Q ss_pred             CCCCCCeEEEEEEEe--CCc----eEEEEEEEEEEee---cccccc-CCCceEEecC-CcEEEEEeCCCCCCCC-eEEEE
Q psy15127        130 VGPQDEGLYICDVEN--LVG----SISLRASLTVHLL---RDDFRA-EPKDTRVASG-ETALLECGPPKGQPEP-TLHWK  197 (633)
Q Consensus       130 v~~~d~G~Y~C~~~n--~~g----~~s~~~~l~V~~~---~p~~~~-~~~~~~~~~g-~~~~l~C~~~~~~p~~-~i~W~  197 (633)
                      ++.+|+|.|.|.+.+  ..+    .....+.|.|...   +|.+.. .|. ..+..| +.++|.|.+....|.+ .+.|+
T Consensus        85 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~-~~~~~g~~~v~L~C~~~g~~P~p~~v~W~  163 (232)
T 1dn0_B           85 VTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSC-ENSPSDTSSVAVGCLAQDFLPDSITFSWK  163 (232)
T ss_dssp             CCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC-------CCSEEEEEEEEEEBSSCCEEEEE
T ss_pred             CCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccc-cccCCCCCcEEEEEEEEEEeCCCeEEEEE
Confidence            999999999999983  211    1223457778652   133322 222 234578 9999999954445776 99999


Q ss_pred             E-CCEEec
Q psy15127        198 K-NGQFID  204 (633)
Q Consensus       198 ~-~~~~~~  204 (633)
                      + +|..+.
T Consensus       164 ~~~g~~l~  171 (232)
T 1dn0_B          164 YKNNSDIS  171 (232)
T ss_dssp             ETTSCEEC
T ss_pred             cCCCCcee
Confidence            9 877654

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.62  E-value=3.1e-15  Score=135.06  Aligned_cols=150  Identities=14%  Similarity=0.188  Sum_probs=107.0

Q ss_pred             ccccCCCCCCCCCCccccccceeeEEEEeccc-------CCCCCceEEe----e--CceEEEcCCCC--CCeEEEEEEec
Q psy15127          4 HLDTNHAHPMSSPRAEIEPATRTNRVSISGDP-------GFDSRRSRSI----F--GSVLGARGALS--DDQWKLIAKEA   68 (633)
Q Consensus         4 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~~~~~~~~~----~--~~~L~i~~v~~--~G~Y~C~a~~v   68 (633)
                      .+.+.|... +.|.+.|.|+...........+       .....|+.+.    .  +.+|.|.+++.  +|.|+|.+.+.
T Consensus        12 ~v~L~C~~~-~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~   90 (184)
T 2ny1_B           12 TVELTCTAS-QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQ   90 (184)
T ss_dssp             CEEECCBCS-SSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEEEETTE
T ss_pred             CEEEEEEEc-CCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEEEEEEEcC
Confidence            344555544 5677888876643321111100       0112334333    2  34599999999  99999999881


Q ss_pred             ----CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEe
Q psy15127         69 ----LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus        69 ----~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                          .........+....+.+|+.++|.|.+.+.|.+.++|++++..+      ......|.|.+++.+|+|.|+|.|.|
T Consensus        91 ~~~~~l~V~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~------~~~~~~L~i~~v~~~d~G~Y~C~a~n  164 (184)
T 2ny1_B           91 KEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN------IQGGKTLSVSQLELQDSGTWTCTVLQ  164 (184)
T ss_dssp             EEEEEEEEEEEEESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCE------EEESSEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCcEEEEEEEecCCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc------ccCceEEEEecCCcCCCeEEEEEEEE
Confidence                11111122355668999999999999988999999999987654      33567999999999999999999999


Q ss_pred             CCceEEEEEEEEEEee
Q psy15127        145 LVGSISLRASLTVHLL  160 (633)
Q Consensus       145 ~~g~~s~~~~l~V~~~  160 (633)
                      ..+..+..+.|.|...
T Consensus       165 ~~~~~~~~~~l~V~~~  180 (184)
T 2ny1_B          165 NQKKVEFKIDIVVLAF  180 (184)
T ss_dssp             TTEEEEEEEEEEEECC
T ss_pred             CCceEEEEEEEEEEec
Confidence            9999999999999876

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.62  E-value=7e-16  Score=148.72  Aligned_cols=147  Identities=18%  Similarity=0.206  Sum_probs=92.5

Q ss_pred             CCeEEEEEEe------cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC------CC---------
Q psy15127         58 DDQWKLIAKE------ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM------PT---------  114 (633)
Q Consensus        58 ~G~Y~C~a~~------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i------~~---------  114 (633)
                      .+.|.|.|.+      ......+...|..+.+.+|++++|.|.+.+ +.+.+.|+|..  ...      ..         
T Consensus         8 ~~~y~~~~~~~~g~~~~~~~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~   86 (270)
T 3qib_D            8 LIAYLKQATKGGGGSGGGGGMKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDM   86 (270)
T ss_dssp             --------------------CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHH
T ss_pred             HHHHHHHHhccCCccccccceeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCc
Confidence            7899999988      234466777788899999999999999865 67899999832  111      00         


Q ss_pred             -C-CeEEcc----cceEEEccCCCCCCeEEEEEEEeCC----ceEEEEEEEEEEee-----ccccc-cCCCceEEecCCc
Q psy15127        115 -G-RAKILD----DRSLQIENVGPQDEGLYICDVENLV----GSISLRASLTVHLL-----RDDFR-AEPKDTRVASGET  178 (633)
Q Consensus       115 -~-~~~~~~----~~~L~i~~v~~~d~G~Y~C~~~n~~----g~~s~~~~l~V~~~-----~p~~~-~~~~~~~~~~g~~  178 (633)
                       + ++....    +.+|.|.+++.+|+|.|.|.+.+..    ......+.|.|...     +|.+. ..+....+..|+.
T Consensus        87 ~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~  166 (270)
T 3qib_D           87 TEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQK  166 (270)
T ss_dssp             HHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSE
T ss_pred             cCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCc
Confidence             0 222221    3579999999999999999998642    22334456777752     13322 2233334456999


Q ss_pred             EEEEEeCCCCCCCC-eEEEEECCEEecc
Q psy15127        179 ALLECGPPKGQPEP-TLHWKKNGQFIDL  205 (633)
Q Consensus       179 ~~l~C~~~~~~p~~-~i~W~~~~~~~~~  205 (633)
                      ++|.|.+....|.+ .+.|+++|..+..
T Consensus       167 v~L~C~~~g~~P~~~~v~W~k~g~~l~~  194 (270)
T 3qib_D          167 ATLVCLATGFYPDHVELSWWVNGKEVHS  194 (270)
T ss_dssp             EEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             eEEEEEecceeCCCeEEEEEECCEECCC
Confidence            99999954437766 8999999998864

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.62  E-value=2.3e-15  Score=142.37  Aligned_cols=130  Identities=18%  Similarity=0.260  Sum_probs=90.7

Q ss_pred             CeeeeCCCceEEEcCCeEEEEEEEecc--CCCeEEEEeCC--ccC------------------CCCCeEEcc-----cce
Q psy15127         72 PFPISEPSDATVLSGSVVEFVCRVGGD--PLPTILWRRDD--GKM------------------PTGRAKILD-----DRS  124 (633)
Q Consensus        72 p~~~~~~~~~~~~~G~~~~L~C~~~~~--p~p~i~W~~~~--~~i------------------~~~~~~~~~-----~~~  124 (633)
                      +.+...|..+.+.+|++++|.|.+.+.  +.+.+.|+|+.  ..+                  ..+++....     +.+
T Consensus         2 ~~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   81 (242)
T 1hxm_B            2 GHLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTST   81 (242)
T ss_dssp             CEEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEE
T ss_pred             CccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEE
Confidence            345667888999999999999999875  56789999853  211                  123444432     357


Q ss_pred             EEEccCCCCCCeEEEEEEEeCCc-----e--EEEEEEEEEEee------cccccc-CCCceEEecCCcEEEEEeCCCCCC
Q psy15127        125 LQIENVGPQDEGLYICDVENLVG-----S--ISLRASLTVHLL------RDDFRA-EPKDTRVASGETALLECGPPKGQP  190 (633)
Q Consensus       125 L~i~~v~~~d~G~Y~C~~~n~~g-----~--~s~~~~l~V~~~------~p~~~~-~~~~~~~~~g~~~~l~C~~~~~~p  190 (633)
                      |.|.+++.+|+|.|.|.+.+...     .  ....+.|.|...      +|...+ .+....+.+|+.++|.|.+....|
T Consensus        82 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P  161 (242)
T 1hxm_B           82 LTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFP  161 (242)
T ss_dssp             EEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESS
T ss_pred             EEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEEC
Confidence            99999999999999999987631     1  223467888753      122222 244344567999999999543346


Q ss_pred             C-CeEEEEECCE
Q psy15127        191 E-PTLHWKKNGQ  201 (633)
Q Consensus       191 ~-~~i~W~~~~~  201 (633)
                      . +.+.|++++.
T Consensus       162 ~~~~v~W~~~~~  173 (242)
T 1hxm_B          162 DVIKIHWEEKKS  173 (242)
T ss_dssp             CCEEEEEEESSS
T ss_pred             CCeEEEEEcCCC
Confidence            5 6999999875

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.61  E-value=2.4e-15  Score=143.59  Aligned_cols=129  Identities=19%  Similarity=0.303  Sum_probs=88.5

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCC--ccC------C------------CCCeEEcc-----cceEE
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDD--GKM------P------------TGRAKILD-----DRSLQ  126 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~--~~i------~------------~~~~~~~~-----~~~L~  126 (633)
                      .+..|..+.+.+|++++|.|.+.+.+  .+.+.|+|+.  ..+      .            .+++....     +..|+
T Consensus         9 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   88 (261)
T 2xqy_G            9 QLQQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQ   88 (261)
T ss_dssp             EEECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred             eEECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEE
Confidence            34557788899999999999998766  5789999863  211      0            23444432     34899


Q ss_pred             EccCCCCCCeEEEEEEEeCCc---eEEEEEEEEEEee---ccccccCCCceEEecCCcEEEEEeCCCCCCCC-eEEEEEC
Q psy15127        127 IENVGPQDEGLYICDVENLVG---SISLRASLTVHLL---RDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKN  199 (633)
Q Consensus       127 i~~v~~~d~G~Y~C~~~n~~g---~~s~~~~l~V~~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~  199 (633)
                      |.+++.+|+|.|.|.+.+..+   .....+.|.|...   +|.+...+....+..|+.++|.|.+....|.+ .|.|+++
T Consensus        89 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~  168 (261)
T 2xqy_G           89 LSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSG  168 (261)
T ss_dssp             ECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             EcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecC
Confidence            999999999999999998643   1223457777751   24433322223466899999999954335766 9999988


Q ss_pred             CEE
Q psy15127        200 GQF  202 (633)
Q Consensus       200 ~~~  202 (633)
                      +..
T Consensus       169 g~~  171 (261)
T 2xqy_G          169 SLS  171 (261)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            754

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.60  E-value=5.8e-15  Score=142.06  Aligned_cols=90  Identities=19%  Similarity=0.233  Sum_probs=62.9

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccC-----CCeEEEEeCC--ccC-------------CCCCeEEcc---cceEEE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDP-----LPTILWRRDD--GKM-------------PTGRAKILD---DRSLQI  127 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p-----~p~i~W~~~~--~~i-------------~~~~~~~~~---~~~L~i  127 (633)
                      .+.+...|..+.+.+|++++|.|.+.+.+     .+.+.|+|+.  ..+             ..+++....   ..+|+|
T Consensus        15 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I   94 (268)
T 1x9q_A           15 DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKI   94 (268)
T ss_dssp             CCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred             cceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEE
Confidence            45667778888899999999999998776     4789999853  211             123444332   247999


Q ss_pred             ccCCCCCCeEEEEEEEeCCce-EEEEEEEEEEee
Q psy15127        128 ENVGPQDEGLYICDVENLVGS-ISLRASLTVHLL  160 (633)
Q Consensus       128 ~~v~~~d~G~Y~C~~~n~~g~-~s~~~~l~V~~~  160 (633)
                      .+++.+|+|.|.|.+.+..+. ....+.|.|...
T Consensus        95 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~  128 (268)
T 1x9q_A           95 NRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSS  128 (268)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCEECCCEEEC----
T ss_pred             CCCChhHCEEEEEEEecCCCceEcCCEEEEEccC
Confidence            999999999999999987543 233456666653

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.60  E-value=2.2e-15  Score=145.89  Aligned_cols=125  Identities=18%  Similarity=0.299  Sum_probs=88.5

Q ss_pred             eeeeCCCceEEEcCCeEEEEEEEecc--CCCeEEEEeCCc--cCC------------------CCCeEEccc-----ceE
Q psy15127         73 FPISEPSDATVLSGSVVEFVCRVGGD--PLPTILWRRDDG--KMP------------------TGRAKILDD-----RSL  125 (633)
Q Consensus        73 ~~~~~~~~~~~~~G~~~~L~C~~~~~--p~p~i~W~~~~~--~i~------------------~~~~~~~~~-----~~L  125 (633)
                      .+.. |..+.+.+|++++|.|.+.+.  +.+.+.|+|...  ...                  .+++....+     .+|
T Consensus         3 ~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   81 (280)
T 3fku_X            3 QLVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYM   81 (280)
T ss_dssp             CEEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEE
T ss_pred             eEEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEE
Confidence            3444 888999999999999999764  557899998431  110                  123333321     379


Q ss_pred             EEccCCCCCCeEEEEEEEeC---------CceEEEEEEEEEEe--------------eccccccCCCceEEecCCcEEEE
Q psy15127        126 QIENVGPQDEGLYICDVENL---------VGSISLRASLTVHL--------------LRDDFRAEPKDTRVASGETALLE  182 (633)
Q Consensus       126 ~i~~v~~~d~G~Y~C~~~n~---------~g~~s~~~~l~V~~--------------~~p~~~~~~~~~~~~~g~~~~l~  182 (633)
                      .|.+++.+|+|.|.|.+.+.         .........|.|..              +++.+...+. ..+.+|++++|.
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~  160 (280)
T 3fku_X           82 DLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLT  160 (280)
T ss_dssp             EECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEE
T ss_pred             EECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEE
Confidence            99999999999999999886         22234455677766              2245555555 888999999999


Q ss_pred             EeCCCCCC-CCeEEEEEC
Q psy15127        183 CGPPKGQP-EPTLHWKKN  199 (633)
Q Consensus       183 C~~~~~~p-~~~i~W~~~  199 (633)
                      |.+....+ .+.+.|+|.
T Consensus       161 C~~~~~~~~~~~v~W~r~  178 (280)
T 3fku_X          161 CTGNSNNVGNQGAAWLQQ  178 (280)
T ss_dssp             EECCCCCCCTTCCEEEEE
T ss_pred             EEecCCCCCCceEEEEEE
Confidence            99543244 479999873

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A*

Probab=99.60  E-value=1.2e-14  Score=149.16  Aligned_cols=219  Identities=15%  Similarity=0.163  Sum_probs=139.1

Q ss_pred             cccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCC---
Q psy15127        363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGG---  439 (633)
Q Consensus       363 ~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~---  439 (633)
                      .+.....|.++..|.| .+.+..+....+.  +         ......++|. +.+. ....+|.|+|. |.... +   
T Consensus        71 ~l~~~~~Y~~rV~A~n-~~~S~~s~~~~~~--~---------~~~~~~~pP~-v~~~-~~~~si~v~w~-P~~~~-g~~~  134 (414)
T 3se4_A           71 KLNVYEEIKLRIRAEK-ENTSSWYEVDSFT--P---------FRKAQIGPPE-VHLE-AEDKAIVIHIS-PGTKD-SVMW  134 (414)
T ss_dssp             CCCTTSCEEEEEEEEE-TTEEEEEECCCBC--H---------HHHCCCCCCE-EEEE-ECSSCEEEEEE-CSSSS-CTTT
T ss_pred             cccCCCcEEEEEEEee-CCcCCCEecCcee--e---------cccceeCCCe-EEEE-EcCCEEEEEEE-cCCCC-Ccee
Confidence            4567778999999999 4433221111110  0         0011123453 4433 34568999999 54221 1   


Q ss_pred             --CcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEec--cccCCCCCCCCceeecCCCCCCCc
Q psy15127        440 --VAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENS--HGLGIPSPVSPITRTLGLNSLVPQ  515 (633)
Q Consensus       440 --~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~--~G~g~~s~~~~~~~t~~~~p~~~~  515 (633)
                        .+.+.+|.|.|+..+....+.   .......++|.+|.|++.|.|+|+|.|.  .|.|++|... .+.|.+.+|.++|
T Consensus       135 ~~~~~~~~Y~v~y~~~~~~~~~~---~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~~~g~g~~S~~~-~~~t~~~~~~~~P  210 (414)
T 3se4_A          135 ALDGLSFTYSLVIWKNSSGVEER---IENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVH-CIKTTVENELPPP  210 (414)
T ss_dssp             GGGGSSCEEEEEEEETTTCCEEE---EEEECSEEEECCCCTTCEEEEEEEEECTTTCCEEEECCCE-EEECCSCCSSCCC
T ss_pred             eeecCcEEEEEEEEECCCCceEE---EecCCcEEEEcCCCCCCeEEEEEEEEeccCCCCCccCccc-ccccccccccCCC
Confidence              146789999999876544332   2345678999999999999999999994  7888888665 4566666555555


Q ss_pred             chHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCC-Ccccceeeeeecccee
Q psy15127        516 HLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIP-TASTAVRITWEKYNMA  594 (633)
Q Consensus       516 ~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~-~~~~~~~~~w~~~~~~  594 (633)
                      ..+               .+...+ .++.|+|++|        .    ...+| .++|+.... ....+....|+....-
T Consensus       211 ~~v---------------~~~~~~-~~~~l~W~pp--------~----~~~~Y-~v~y~~~~~~~~~~~~~~~w~~~~~~  261 (414)
T 3se4_A          211 ENI---------------EVSVQN-QNYVLKWDYT--------Y----ANMTF-QVQWLHAFLKRNPGNHLYKWKQIPDC  261 (414)
T ss_dssp             EEE---------------EEEEET-TEEEEEEECS--------S----SSCEE-EEEEEESGGGSCCCC--CCCCBCSTT
T ss_pred             Ccc---------------EEEEec-CCeEEEECCC--------C----CCeEE-EEEEEehhccccccccccCceECCCc
Confidence            432               555554 6799999943        1    23499 999987410 0000001247643100


Q ss_pred             EeecCCccceEEee-ccccceeEEEEEeccccccccccCC
Q psy15127        595 TVMNAATTTSYTVT-HLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       595 ~~~~~~~~~~~~i~-~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                         .....+.+.|+ +|.+++.|.|+|+|.|..|.|++|+
T Consensus       262 ---~~~~~~~~~~t~~l~~~~~Y~~rV~A~n~~g~s~~s~  298 (414)
T 3se4_A          262 ---ENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSE  298 (414)
T ss_dssp             ---TTBSSSEEEEEGGGSCSSEEEEEEEEECSSSEEEECC
T ss_pred             ---cCCCCCEEcCCcccccCccEEEEEEEecCCCcccccc
Confidence               11235677776 6999999999999999999999874

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens}

Probab=99.60  E-value=4.4e-15  Score=145.22  Aligned_cols=178  Identities=13%  Similarity=0.117  Sum_probs=111.4

Q ss_pred             CCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEE--EEeeeeceEEE--ecCCCCCeEEEEE
Q psy15127        411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVA--AHRITSTSITV--SDLKPDTSYMFIV  486 (633)
Q Consensus       411 ~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~--~~~~~~~~~~i--~~L~p~~~Y~~~v  486 (633)
                      .+|.++.+... ...+.|+|+++...   +..+. |.|+|+..+ ...|...  +.....+.+.|  .+|.+++.|.|||
T Consensus         5 ~~P~nv~~~~~-n~~~iL~W~pp~~~---~~~v~-Y~V~y~~~~-~~~W~~~~~c~~~~~~~c~lt~~~l~~~~~Y~~rV   78 (306)
T 3s98_A            5 KSPQKVEVDII-DDNFILRWNRSDES---VGNVT-FSFDYQKTG-MDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRI   78 (306)
T ss_dssp             ---CCCEEEEE-TTEEEEECC-----------CE-EEEEEEESS-CSSCEECTTCSSBSSSEEECCC---CTTSCEEEEE
T ss_pred             CCCcEeEEEEE-CCeEEEEEcCCCCC---CCCeE-EEEEEEECC-CCCcEECCCccCCCCCEEEccccccCCCCcEEEEE
Confidence            46888888766 45578999999843   35565 999999864 3567642  22333445555  4578999999999


Q ss_pred             EEEeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCccccc---chhh
Q psy15127        487 RAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLL---DEAR  563 (633)
Q Consensus       487 ~a~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~---~~~~  563 (633)
                      +|.| .|.|+++... .+.+....+..||.+                ++.... ++|.|+|+||     .+..   ...|
T Consensus        79 ~A~n-~~~S~~s~~~-~f~~~~~~~~~pP~v----------------~~~~~~-~si~v~w~P~-----~~~~~~~~~~g  134 (306)
T 3s98_A           79 RAEK-ENTSSWYEVD-SFTPFRKAQIGPPEV----------------HLEAED-KAIVIHISPG-----TKDSVMWALDG  134 (306)
T ss_dssp             EEEC-SSCEEEEECC-CBCHHHHCBCCCCEE----------------EEEECS-SCEEEEEECC--------CCCC----
T ss_pred             EEEe-CCcCCCEeee-eEechhhCccCCCeE----------------EEEEcC-CEEEEEEECC-----CCCCcceeccC
Confidence            9999 8888776443 344433333333333                555444 6899999933     2111   1257


Q ss_pred             hhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccc--cccccccCC
Q psy15127        564 ARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFF--KTVEGARLD  633 (633)
Q Consensus       564 ~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n--~~g~g~~s~  633 (633)
                      .+.+| .|.|++.+...      +|.      +.  ...+.++|.+|+|++.|.|+|+|.|  ..|.|++|+
T Consensus       135 ~~l~Y-~v~y~~~~~~~------~~~------~~--~~~~~~~l~~L~p~t~Y~~~V~A~~~~~~g~g~~S~  191 (306)
T 3s98_A          135 LSFTY-SLVIWKNSSGV------EER------IE--NIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSP  191 (306)
T ss_dssp             -CCEE-EEEEEETTTCC------CEE------EE--EECTEEEECSCCTTCEEEEEEEEEEGGGTEECCCCC
T ss_pred             CcEEE-EEEEEECCCCC------eEE------Ee--cccceEEEccCCCCCeEEEEEEEEEccCCCCCCCCC
Confidence            89999 99998876543      132      11  2367899999999999999999999  789999885

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens}

Probab=99.60  E-value=1.3e-14  Score=132.22  Aligned_cols=173  Identities=13%  Similarity=0.128  Sum_probs=122.5

Q ss_pred             CCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEec
Q psy15127        412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENS  491 (633)
Q Consensus       412 ~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~  491 (633)
                      +|.++.....+. ...|.|.+|...+   +.+ .|.|+|+..   ..|......+..+.+.|.+|.++..|.++|+|.|+
T Consensus         4 ~P~nv~~~s~n~-~~iL~W~pp~~~~---~~v-~Y~V~y~~~---~~w~~~c~~~~~~~c~lt~l~~~~~Y~~rV~A~~~   75 (201)
T 3lqm_A            4 PPENVRMNSVNF-KNILQWESPAFAK---GQL-TFTAQYLSY---RIFQDKCMQTTLTECDFSSLSKYGDHTLRVRAEFA   75 (201)
T ss_dssp             CCEEEEEEEETT-EEEEEEECCCCSS---SCC-EEEEEEEET---TEEEEEEEEESSSEEECTTSCSSSCEEEEEEEEET
T ss_pred             CCcccEEEEECC-ceEEEECCCCCCC---CCe-EEEEEEEEC---CCcccCcCccCCCEEECCCCccCCCEEEEEEEecC
Confidence            467776665554 4679999998642   344 599999975   35887777777889999999999999999999999


Q ss_pred             cccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhh--------
Q psy15127        492 HGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEAR--------  563 (633)
Q Consensus       492 ~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~--------  563 (633)
                      .|.|.++.. .+.......+. ||.+                ++. ...++|.|.|.+|      ... .+|        
T Consensus        76 ~~~S~~s~~-~f~~~~~t~~~-PP~v----------------~~~-~~~~si~v~w~~P------~~~-~~~~~~~~~~~  129 (201)
T 3lqm_A           76 DEHSDWVQI-TFSPVDDTIIG-PPGM----------------QVE-VLADCLHMRFLAP------KIE-NEYETWTMKNV  129 (201)
T ss_dssp             TEECCCEEE-EECHHHHSBCC-CCEE----------------EEE-EETTEEEEEEECC------EEE-CSSCEEEHHHH
T ss_pred             CCcCcceee-eeeecccCeeC-CCEE----------------EEE-EeCCEEEEEEcCC------Ccc-CCCcccCHHHh
Confidence            998887642 12111112222 2333                443 3468999999965      111 123        


Q ss_pred             -hhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEecccc--ccccccCC
Q psy15127        564 -ARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFK--TVEGARLD  633 (633)
Q Consensus       564 -~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~--~g~g~~s~  633 (633)
                       .+..| .|.|.+.+...      .+      .+  ......++|.+|+|++.|.|+|+|.+.  .|.|.+|+
T Consensus       130 ~~~l~Y-~v~y~~~~~~~------~~------~~--~~~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~~g~~S~  187 (201)
T 3lqm_A          130 YNSWTY-NVQYWKQGTDE------KF------QI--TPQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSE  187 (201)
T ss_dssp             CTTCEE-EEEEEETTCCC------CE------EE--CCSSSEEEECSCCTTCEEEEEEEEEETTTTEECCCCC
T ss_pred             CCceEE-EEEEEECCCCc------EE------EE--EecCceEEEecCCCCCcEEEEEEEEeccCCCCCCcCC
Confidence             37899 88888765443      01      11  234678999999999999999999996  68888874

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A*

Probab=99.60  E-value=1.9e-15  Score=155.07  Aligned_cols=218  Identities=14%  Similarity=0.090  Sum_probs=86.6

Q ss_pred             ceEEecccccCCEEEEEEEEcC--CcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCC
Q psy15127        358 RRIACDLRETDSGLYTCTASSE--SGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEP  435 (633)
Q Consensus       358 ~~~i~~~~~~d~g~y~c~a~n~--~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~  435 (633)
                      .+.|.+|.....|.++..|.|.  .|....+....+.....           ..+.+|.++.+...+ .++.|.|.++. 
T Consensus       164 ~~~i~~L~p~t~Y~~~V~A~n~~~~g~g~~S~~~~~~t~~~-----------~~~~~P~~v~~~~~~-~~~~l~W~pp~-  230 (414)
T 3se4_A          164 RHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVE-----------NELPPPENIEVSVQN-QNYVLKWDYTY-  230 (414)
T ss_dssp             EEEECCCCTTCEEEEEEEEECTTTCCEEEECCCEEEECCSC-----------CSSCCCEEEEEEEET-TEEEEEEECSS-
T ss_pred             EEEEcCCCCCCeEEEEEEEEeccCCCCCccCcccccccccc-----------cccCCCCccEEEEec-CCeEEEECCCC-
Confidence            3466788888899999999994  45443332222322211           123456666665554 67999999975 


Q ss_pred             CCCCCcceeEEEEEEEEe-------cCCCCeEEE--EEeeeeceEEEe-cCCCCCeEEEEEEEEeccccCCCCCCCCcee
Q psy15127        436 RGGGVAPVIGYTVEYFSS-------DLQTGWVVA--AHRITSTSITVS-DLKPDTSYMFIVRAENSHGLGIPSPVSPITR  505 (633)
Q Consensus       436 ~~~~~~~i~~Y~v~~~~~-------~~~~~~~~~--~~~~~~~~~~i~-~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~  505 (633)
                            ...+|.|+|+..       +....|...  ........+.|. +|.+++.|.|+|+|.|..|.|+++... .+.
T Consensus       231 ------~~~~Y~v~y~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~t~~l~~~~~Y~~rV~A~n~~g~s~~s~~~-~~~  303 (414)
T 3se4_A          231 ------ANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEI-KFD  303 (414)
T ss_dssp             ------SSCEEEEEEEESGGGSCCCC--CCCCBCSTTTTBSSSEEEEEGGGSCSSEEEEEEEEECSSSEEEECCCE-EEE
T ss_pred             ------CCeEEEEEEEehhccccccccccCceECCCccCCCCCEEcCCcccccCccEEEEEEEecCCCcccccccc-ccc
Confidence                  234999999973       123455432  112335667776 699999999999999999999988665 466


Q ss_pred             ecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccc----hhhhhcceeEEEEEEcCCCcc
Q psy15127        506 TLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLD----EARARLGTKVVNLRELIPTAS  581 (633)
Q Consensus       506 t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~----~~~~i~~y~~i~~~~~~~~~~  581 (633)
                      +....+..||.+                ++... .+++.|.|.+|      ....    ..+.+.+| .|.|.+.+... 
T Consensus       304 t~~~~~~~pP~l----------------~~~~~-~~si~v~W~~P------~~~~~~~~~~~~~~~Y-~v~y~~~~~~~-  358 (414)
T 3se4_A          304 TEIQAFLLPPVF----------------NIRSL-SDSFHIYIGAP------KQSGNTPVIQDYPLIY-EIIFWENTSNA-  358 (414)
T ss_dssp             TTCC----------------------------------------------------------------------------
T ss_pred             chhccccCCCeE----------------EEEEC-CCeEEEEEECC------CCccccchhhcCCeEE-EEEEEECCCCc-
Confidence            666644444444                45433 57999999965      1111    12468899 88887654432 


Q ss_pred             cceeeeeeccceeEeecCCccceEEeeccccceeEEEEEecccc----ccccccCC
Q psy15127        582 TAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFK----TVEGARLD  633 (633)
Q Consensus       582 ~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~----~g~g~~s~  633 (633)
                           .+.      +  ....+.++|.+|+|++.|.|+|+|.+.    .|.|++|+
T Consensus       359 -----~~~------~--~~~~~~~~l~~L~p~t~Y~~~V~A~~~~~~~~g~g~~S~  401 (414)
T 3se4_A          359 -----ERK------I--IEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSD  401 (414)
T ss_dssp             --------------------------------------------------------
T ss_pred             -----eEE------E--EecCCeEEeCCCCCCCeEEEEEEEEecccccCCCCCCCC
Confidence                 111      1  135678999999999999999999993    58998874

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.60  E-value=2.1e-15  Score=143.04  Aligned_cols=133  Identities=20%  Similarity=0.285  Sum_probs=93.5

Q ss_pred             CeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC--------------CccC-----CCCCeEEcc----cceEEEc
Q psy15127         72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD--------------DGKM-----PTGRAKILD----DRSLQIE  128 (633)
Q Consensus        72 p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~--------------~~~i-----~~~~~~~~~----~~~L~i~  128 (633)
                      +.++..|..+.+.+|++++|.| ..+.+.+.+.|+|.              +..+     ..+++....    +.+|.|.
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~   81 (245)
T 4ei6_B            3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQ   81 (245)
T ss_dssp             CCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEEC
T ss_pred             cceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEEC
Confidence            4567778889999999999999 66778889999982              1111     114444433    2389999


Q ss_pred             cCCCCCCeEEEEEEEeC----CceEEEEEEEEEEe-----eccccc-cCCCceEEecCCcEEEEEeCCCCCCCC-eEEEE
Q psy15127        129 NVGPQDEGLYICDVENL----VGSISLRASLTVHL-----LRDDFR-AEPKDTRVASGETALLECGPPKGQPEP-TLHWK  197 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~n~----~g~~s~~~~l~V~~-----~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~  197 (633)
                      +++.+|+|.|.|.+.+.    .......+.|.|..     .+|.+. ..+....+.+|+.++|.|.+....|.+ .+.|+
T Consensus        82 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~  161 (245)
T 4ei6_B           82 PTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  161 (245)
T ss_dssp             SCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             CCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEE
Confidence            99999999999999853    22344556777774     123332 334444456799999999953336655 89999


Q ss_pred             ECCEEecc
Q psy15127        198 KNGQFIDL  205 (633)
Q Consensus       198 ~~~~~~~~  205 (633)
                      ++|..+..
T Consensus       162 ~~g~~l~~  169 (245)
T 4ei6_B          162 VNGKEVHS  169 (245)
T ss_dssp             ETTEEECT
T ss_pred             ECCEECCC
Confidence            99987753

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.59  E-value=5.4e-15  Score=135.60  Aligned_cols=108  Identities=12%  Similarity=0.110  Sum_probs=87.6

Q ss_pred             ceEEEcCCCC--CCeEEEEEEe----------cCcCCeeeeCCCceEEEcCCeEEEEEEEecc-CCCeEEEEeCCccCCC
Q psy15127         48 SVLGARGALS--DDQWKLIAKE----------ALIKPFPISEPSDATVLSGSVVEFVCRVGGD-PLPTILWRRDDGKMPT  114 (633)
Q Consensus        48 ~~L~i~~v~~--~G~Y~C~a~~----------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~-p~p~i~W~~~~~~i~~  114 (633)
                      ++|.|.+++.  +|.|+|.+.|          +..+|.+...+. ..+.+|+.++|.|.+.+. |.+.+.|+|+|..+..
T Consensus        54 ~~L~i~~v~~~D~G~Y~C~a~n~~~s~~~~l~V~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~  132 (204)
T 3sgj_C           54 SSYFIDAATVDDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY  132 (204)
T ss_dssp             SEEEESSCCGGGCEEEEEEETTSBCCCCEEEEEECSSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE
T ss_pred             cEEEEecccccCCEEEEEEeCCCcccccEEEEEecCceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec
Confidence            7899999998  9999999987          445566655554 678999999999999655 5678999999987532


Q ss_pred             CCeEEcccceEEEccCCCCCCeEEEEEEEeCC-ceEEEEEEEEEEee
Q psy15127        115 GRAKILDDRSLQIENVGPQDEGLYICDVENLV-GSISLRASLTVHLL  160 (633)
Q Consensus       115 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~-g~~s~~~~l~V~~~  160 (633)
                          ...++.|.|.+++.+|+|.|+|.|.|.. +..+..+.|.|.++
T Consensus       133 ----~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~  175 (204)
T 3sgj_C          133 ----FHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQG  175 (204)
T ss_dssp             ----EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred             ----ccCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCc
Confidence                2235689999999999999999999954 44677888888876

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.59  E-value=8.2e-15  Score=135.51  Aligned_cols=124  Identities=23%  Similarity=0.321  Sum_probs=92.2

Q ss_pred             EeeCceEEEc-----CCCC--CCeEEEEEEe-------------cC-cCCeeeeCCCceEEEcCCeEEEEEEE-eccCCC
Q psy15127         44 SIFGSVLGAR-----GALS--DDQWKLIAKE-------------AL-IKPFPISEPSDATVLSGSVVEFVCRV-GGDPLP  101 (633)
Q Consensus        44 ~~~~~~L~i~-----~v~~--~G~Y~C~a~~-------------v~-~~p~~~~~~~~~~~~~G~~~~L~C~~-~~~p~p  101 (633)
                      ...++.+.+.     +++.  +|.|+|.|.+             +. .++.+...+....+.+|+.++|.|.+ .+.|.+
T Consensus        63 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~  142 (212)
T 2v9r_A           63 LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEP  142 (212)
T ss_dssp             ECTTSCEEESSCCCCSSCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCC
T ss_pred             EecCCcEEEEEEEecCCCcccCeEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCC
Confidence            3445555544     4455  9999999988             22 23445566777889999999999998 889999


Q ss_pred             eEEEEeCCccCCCC-CeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEE-EEEEEEEeeccccccCC
Q psy15127        102 TILWRRDDGKMPTG-RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISL-RASLTVHLLRDDFRAEP  168 (633)
Q Consensus       102 ~i~W~~~~~~i~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~-~~~l~V~~~~p~~~~~~  168 (633)
                      .+.|++++..+... ......++.|.|.+++.+|+|.|+|.|.|..|.... .+.|.|..+ |.+...|
T Consensus       143 ~v~W~~~~~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~-P~~~~~P  210 (212)
T 2v9r_A          143 TISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLER-PSFVKAA  210 (212)
T ss_dssp             EEEEEETTEEECTTSTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---------
T ss_pred             EEEEEECCccCCCCcceEEccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeC-chHhhhc
Confidence            99999999988643 344456779999999999999999999999998654 489999987 7665554

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.59  E-value=4e-14  Score=135.03  Aligned_cols=187  Identities=17%  Similarity=0.150  Sum_probs=93.4

Q ss_pred             CCCCCCeEEEEEEEeCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCC-----CCeEEEEECC--EE
Q psy15127        130 VGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQP-----EPTLHWKKNG--QF  202 (633)
Q Consensus       130 v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p-----~~~i~W~~~~--~~  202 (633)
                      ++.+|+|.|+|.|.   |.....+.+.+..+ +.+...|....+.+|++++|.|. ..+.|     .+.+.|+|++  ..
T Consensus        11 v~~~dsg~Y~C~a~---g~~~~~~~~~~~~~-~~~~~~p~~~~v~~G~~v~L~C~-~~~~~~~~~~~~~v~W~k~~~g~~   85 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYSFTNYWMNWLRE-LVMTQSPLTLSVTIGQPASISCK-SSQSLLYSNGKTYLNWLLQRPGQS   85 (254)
T ss_dssp             ------------------------------C-CCEEEECSEEEECTTSCEEEEEE-ESSCCBCSSSCBCEEEEEECTTSC
T ss_pred             ecCCccEEEEEcCc---hhhhhhhhhheeec-eeEEeCCceEEecCCCcEEEEee-ccCcccccCCCCceEEEEeCCCCC
Confidence            68899999999998   44444444444444 66777788889999999999999 46666     4899999842  21


Q ss_pred             ec----------cC--CCeeEEec--cceeeeEEE----eeeEEEEeecCCCCC----Ccccccc---cceeEEe-----
Q psy15127        203 ID----------LE--SSKSLDLS--RRTLGWLRV----RPLYWNVARPRANLN----PRYIGRK---MASLLIW-----  252 (633)
Q Consensus       203 ~~----------~~--~~~~~~~~--~~~~~~~~~----~g~y~C~a~~~~~~~----p~~~~~~---~~~~~~~-----  252 (633)
                      +.          ..  .+......  ...|.+..+    .|.|+|.+.+..+..    ..+....   .+.....     
T Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~  165 (254)
T 2c1o_A           86 PKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSE  165 (254)
T ss_dssp             CEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHH
T ss_pred             ceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChh
Confidence            11          00  11111111  112222222    489999998875321    0111110   1111111     


Q ss_pred             -cCCceEEEEEEEeeecC--CeeEEEECCEEEEec-cC------CccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127        253 -NHPRVNRLSCFAEGSPL--PSVFWTQEGSQVLMF-PG------NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG  322 (633)
Q Consensus       253 -~~g~~~~l~C~~~g~p~--~~v~W~~~g~~~~~~-~~------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  322 (633)
                       ..|+.++|.|.+.|.++  +.+.|+++|..+... ..      .....+  ...+.|.|.++..+|+|.|+|.|.|...
T Consensus       166 ~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~~  243 (254)
T 2c1o_A          166 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTY--SMSSTLTLTKDEYERHNSYTCEATHKTS  243 (254)
T ss_dssp             HHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCE--EEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred             hccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcE--EEEEEEEeccccccCCCeEEEEEEcCCC
Confidence             13679999999998544  369999999876421 00      000000  1123678888888888888888888765


Q ss_pred             e
Q psy15127        323 S  323 (633)
Q Consensus       323 ~  323 (633)
                      .
T Consensus       244 ~  244 (254)
T 2c1o_A          244 T  244 (254)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*

Probab=99.59  E-value=9.7e-14  Score=135.03  Aligned_cols=113  Identities=16%  Similarity=0.100  Sum_probs=74.9

Q ss_pred             CCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEe-eCCeEEEEeCCCCCCCCCCcc----
Q psy15127        368 DSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNT-TRGSVTLGWGEPEPRGGGVAP----  442 (633)
Q Consensus       368 d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~-~~~~i~l~W~~~~~~~~~~~~----  442 (633)
                      ..+.++|.|.|..|..+....+.+...             +.|.||.++.+... ....+.|+|++|...   +.+    
T Consensus       184 ~~y~~~V~A~n~lg~~s~~~~f~~~~i-------------VkPdPP~~l~~~~~~~~~~l~vsW~~P~~~---~~p~~~~  247 (306)
T 3d85_D          184 LPIEVMVDAVHKLKYEQYTSSFFIRDI-------------IKPDPPKNLQLKPLKNSRQVEVSWEYPDTW---STPHSYF  247 (306)
T ss_dssp             SCEEEEEEEEETTEEEEEEEEECHHHH-------------BCCCCCEEEEEEEC----CEEEEEECCTTS---CSCTTTS
T ss_pred             EEEEEEEEEEccCCccccceEEEehhc-------------EecCCCceEEEEEecCCCcEEEEEcCCCCC---cCCCcee
Confidence            457788999999997665544443321             22456777777664 347999999998742   233    


Q ss_pred             eeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCC
Q psy15127        443 VIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVS  501 (633)
Q Consensus       443 i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~  501 (633)
                      .+.|.|+|+..+....|..  .....+++.|   .+++.|.|+|+|.|..|.|.+|.++
T Consensus       248 ~L~Y~vryr~~~~~~~~~~--~~~~~ts~~l---~~~~~Y~vqVRa~~~~~~G~WSeWS  301 (306)
T 3d85_D          248 SLTFCVQVQGKSKREKKDR--VFTDKTSATV---ICRKNASISVRAQDRYYSSSWSEWA  301 (306)
T ss_dssp             CEEEEEEEECC------CE--EEESSSEEEE---CCCSSCEEEEEEEESSSCCCCCCCE
T ss_pred             eEEEEEEEEECCCCccEEE--eeccccEEEE---eCCCeEEEEEEeccCCCCCCCCCCC
Confidence            3789999998764333332  2234456666   4699999999999999999999886

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.59  E-value=2.7e-15  Score=142.94  Aligned_cols=126  Identities=20%  Similarity=0.328  Sum_probs=83.3

Q ss_pred             eCCCceEEEcCCeEEEEEEEecc--CCCeEEEEeCCc--c---C---------------CCCCeEEccc-----ceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGD--PLPTILWRRDDG--K---M---------------PTGRAKILDD-----RSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~--p~p~i~W~~~~~--~---i---------------~~~~~~~~~~-----~~L~i~  128 (633)
                      .+|..+.+.+|++++|.|.+.+.  +...+.|+|...  .   +               ..+|+....+     .+|+|.
T Consensus         5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (253)
T 3liz_H            5 VESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMS   84 (253)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEEC
T ss_pred             EcCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEEC
Confidence            44667889999999999999763  356799998431  1   0               1134444322     359999


Q ss_pred             cCCCCCCeEEEEEEEeC----CceEEEEEEEEEEe---eccccccCCCceEEecCCcEEEEEeCCCCCCCC-eEEEEECC
Q psy15127        129 NVGPQDEGLYICDVENL----VGSISLRASLTVHL---LRDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNG  200 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~n~----~g~~s~~~~l~V~~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~~  200 (633)
                      +++.+|+|.|.|.+.+.    .......+.|.|..   .+|.+...+....+..|+.+.|.|.+....|.+ .+.|++++
T Consensus        85 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~  164 (253)
T 3liz_H           85 SLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS  164 (253)
T ss_dssp             SCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             CCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCC
Confidence            99999999999999876    23334445677762   224444333334566799999999954447766 89999887


Q ss_pred             E
Q psy15127        201 Q  201 (633)
Q Consensus       201 ~  201 (633)
                      .
T Consensus       165 ~  165 (253)
T 3liz_H          165 L  165 (253)
T ss_dssp             B
T ss_pred             e
Confidence            5

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.59  E-value=1.1e-14  Score=135.34  Aligned_cols=109  Identities=19%  Similarity=0.271  Sum_probs=93.0

Q ss_pred             CceEEEcCCCC--CCeEEEEEEe-------------cCc---------------CCeeeeCCCceEEEcCCeEEEEEEEe
Q psy15127         47 GSVLGARGALS--DDQWKLIAKE-------------ALI---------------KPFPISEPSDATVLSGSVVEFVCRVG   96 (633)
Q Consensus        47 ~~~L~i~~v~~--~G~Y~C~a~~-------------v~~---------------~p~~~~~~~~~~~~~G~~~~L~C~~~   96 (633)
                      ++.|.|.+++.  +|.|+|.+.+             +..               +|.+...+....+.+|+.+.|.|.+.
T Consensus        64 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~  143 (218)
T 3k0w_A           64 TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAV  143 (218)
T ss_dssp             SSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEE
T ss_pred             CCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEec
Confidence            46899999998  9999999998             111               16777888888999999999999999


Q ss_pred             ccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCce-EEEEEEEEEEee
Q psy15127         97 GDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS-ISLRASLTVHLL  160 (633)
Q Consensus        97 ~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~s~~~~l~V~~~  160 (633)
                      +.|.+.++|++++..+....     ...|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|...
T Consensus       144 g~p~~~v~W~~~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~  203 (218)
T 3k0w_A          144 GSPIPHYQWFKNELPLTHET-----KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL  203 (218)
T ss_dssp             BSSCCEEEEEETTEECTTCC-----SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC-
T ss_pred             ccCCCeEEEEECCEECCCCC-----CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCC
Confidence            99999999999999886542     358999999999999999999998887 677778888764

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.58  E-value=5.3e-16  Score=146.03  Aligned_cols=167  Identities=16%  Similarity=0.156  Sum_probs=89.3

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCc--cC-------------CCCCeEEc---ccceEEEccCCC
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG--KM-------------PTGRAKIL---DDRSLQIENVGP  132 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~--~i-------------~~~~~~~~---~~~~L~i~~v~~  132 (633)
                      .+.+...|..+.+.+|++++|.|.+.+.|.+.|.|+|++.  .+             ..+++...   .+.+|.|.+++.
T Consensus        23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  102 (233)
T 3bqu_C           23 ETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLS  102 (233)
T ss_dssp             CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----C
T ss_pred             ceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCH
Confidence            4556666888899999999999999888778899998542  11             01222222   223799999999


Q ss_pred             CCCeEEEEEEEeCCce-EEEEEEEEEEee--ccccccCCCceEEecCCcEEEEEeCCCCCCCC-eEEEEECCEEeccCCC
Q psy15127        133 QDEGLYICDVENLVGS-ISLRASLTVHLL--RDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFIDLESS  208 (633)
Q Consensus       133 ~d~G~Y~C~~~n~~g~-~s~~~~l~V~~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~~~~~~~~~~  208 (633)
                      +|+|.|.|.+.+..+. ....+.|.|...  +|.+...+....+.+|+.++|.|.+....|.+ .+.|+++|..+.....
T Consensus       103 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~  182 (233)
T 3bqu_C          103 EDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL  182 (233)
T ss_dssp             CCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEE
T ss_pred             HHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCce
Confidence            9999999999887553 223345666542  25554433333344799999999954335554 8999999987754300


Q ss_pred             eeE--E-ecc------ceeeeEEE----eeeEEEEeecCCCC
Q psy15127        209 KSL--D-LSR------RTLGWLRV----RPLYWNVARPRANL  237 (633)
Q Consensus       209 ~~~--~-~~~------~~~~~~~~----~g~y~C~a~~~~~~  237 (633)
                      ...  . ..+      ..+.+...    .|.|+|.|.|....
T Consensus       183 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          183 NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             EEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             EecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            000  0 011      11222222    48999999997654

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.58  E-value=4.7e-15  Score=140.20  Aligned_cols=132  Identities=17%  Similarity=0.251  Sum_probs=91.1

Q ss_pred             CeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCc--------------cC----CCCCeEEcc----cceEEEcc
Q psy15127         72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG--------------KM----PTGRAKILD----DRSLQIEN  129 (633)
Q Consensus        72 p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~--------------~i----~~~~~~~~~----~~~L~i~~  129 (633)
                      +.+...|..+.+.+|++++|.|.+.+ +.+.+.|+|...              ..    ..+++....    +.+|.|.+
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~   81 (240)
T 3q5y_A            3 SGVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSA   81 (240)
T ss_dssp             CCCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECS
T ss_pred             cccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECc
Confidence            34566778889999999999999875 778999999321              10    013444332    34799999


Q ss_pred             CCCCCCeEEEEEEEeC---CceEEEEEEEEEEe-----eccccc-cCCCceEEecCCcEEEEEeCCCCCCCC-eEEEEEC
Q psy15127        130 VGPQDEGLYICDVENL---VGSISLRASLTVHL-----LRDDFR-AEPKDTRVASGETALLECGPPKGQPEP-TLHWKKN  199 (633)
Q Consensus       130 v~~~d~G~Y~C~~~n~---~g~~s~~~~l~V~~-----~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~  199 (633)
                      ++.+|+|.|.|.+.+.   .......+.|.|..     .+|.+. ..+....+..|+.+.|.|.+....|.+ .+.|+++
T Consensus        82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~  161 (240)
T 3q5y_A           82 LELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN  161 (240)
T ss_dssp             CCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             CChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEEC
Confidence            9999999999999732   22234455677764     123333 233444456799999999954436666 8899999


Q ss_pred             CEEec
Q psy15127        200 GQFID  204 (633)
Q Consensus       200 ~~~~~  204 (633)
                      |..+.
T Consensus       162 g~~l~  166 (240)
T 3q5y_A          162 GKEVH  166 (240)
T ss_dssp             TEEEC
T ss_pred             CEECc
Confidence            88775

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.58  E-value=8.9e-15  Score=135.24  Aligned_cols=151  Identities=16%  Similarity=0.197  Sum_probs=105.7

Q ss_pred             cCCCCCCCCCCccccccceeeEEEE----ecc-cCCCCCceEEeeCceEEEcCCCC--CCeEEEEEEe------------
Q psy15127          7 TNHAHPMSSPRAEIEPATRTNRVSI----SGD-PGFDSRRSRSIFGSVLGARGALS--DDQWKLIAKE------------   67 (633)
Q Consensus         7 ~~~~~~~~~~~~~i~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~L~i~~v~~--~G~Y~C~a~~------------   67 (633)
                      +.|... +.|.+.|.|+........    ++. ......|+.+. ++.|.|.+++.  +|.|+|.|.+            
T Consensus        21 L~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~   98 (212)
T 1f97_A           21 LTCTYS-GFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS-SSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIH   98 (212)
T ss_dssp             EECEEE-SCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE-TTEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEE
T ss_pred             EEeEeC-CCCCcEEEEEECCCceeeEEecCCcccccccCcEEee-ceeEEEcccCcccCeEEEEEEEccCCCcccEEEEE
Confidence            344333 347778886654332110    000 01223455444 48999999998  9999999987            


Q ss_pred             --cCcCCeeeeCCCceEEEcCCeEEEEEE-EeccCCCeEEEEeCCc-cCCCCC----------eEE-cccceEEEccCCC
Q psy15127         68 --ALIKPFPISEPSDATVLSGSVVEFVCR-VGGDPLPTILWRRDDG-KMPTGR----------AKI-LDDRSLQIENVGP  132 (633)
Q Consensus        68 --v~~~p~~~~~~~~~~~~~G~~~~L~C~-~~~~p~p~i~W~~~~~-~i~~~~----------~~~-~~~~~L~i~~v~~  132 (633)
                        +..+|.+...+....+.+|+.+.|.|. +.+.|.+.+.|++++. .+....          ... ...+.|.|.+++.
T Consensus        99 l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  178 (212)
T 1f97_A           99 LTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTA  178 (212)
T ss_dssp             EEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCG
T ss_pred             EEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEecCCCceEEEEecCh
Confidence              344555544445567899999999999 6889999999999999 876432          122 2357899999999


Q ss_pred             CCCeEEEEEEEeCCceE--EEEEEEEEEe
Q psy15127        133 QDEGLYICDVENLVGSI--SLRASLTVHL  159 (633)
Q Consensus       133 ~d~G~Y~C~~~n~~g~~--s~~~~l~V~~  159 (633)
                      +|+|.|+|.|.|..|..  +..+.|.|..
T Consensus       179 ~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          179 FDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             GGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             hhCcEEEEEEccccCCccccceEEEEEEE
Confidence            99999999999999987  5566666654

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.58  E-value=2.6e-15  Score=142.65  Aligned_cols=127  Identities=22%  Similarity=0.326  Sum_probs=80.7

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCC--ccC------------------CCCCeEEcc-----cceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDD--GKM------------------PTGRAKILD-----DRSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~--~~i------------------~~~~~~~~~-----~~~L~i~  128 (633)
                      .+|..+.+.+|++++|.|.+.+.+  .+.+.|+|+.  ..+                  ..+++....     +..|.|.
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (257)
T 3bn9_D            5 VQSGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMS   84 (257)
T ss_dssp             EEECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEE
T ss_pred             EccCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEEC
Confidence            445677899999999999998765  5789999853  111                  023444332     2479999


Q ss_pred             cCCCCCCeEEEEEEEeCCc-------------eEEEEEEEEEEe---eccccccCCCceEEecCCcEEEEEeCCCCCCCC
Q psy15127        129 NVGPQDEGLYICDVENLVG-------------SISLRASLTVHL---LRDDFRAEPKDTRVASGETALLECGPPKGQPEP  192 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~n~~g-------------~~s~~~~l~V~~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~  192 (633)
                      +++.+|+|.|.|.+.+..|             .....+.|.|..   .+|.+...+....+.+|+.++|.|.+....|.+
T Consensus        85 ~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~p  164 (257)
T 3bn9_D           85 SLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP  164 (257)
T ss_dssp             SCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSC
T ss_pred             CCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCC
Confidence            9999999999999998754             112345778875   124444333233467899999999954445776


Q ss_pred             -eEEEEECCEE
Q psy15127        193 -TLHWKKNGQF  202 (633)
Q Consensus       193 -~i~W~~~~~~  202 (633)
                       .|.|++++..
T Consensus       165 i~v~W~k~g~~  175 (257)
T 3bn9_D          165 VTVSWNSGALT  175 (257)
T ss_dssp             CEEEETTTTCC
T ss_pred             cEEEEeeCCCc
Confidence             9999998764

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.58  E-value=1.9e-14  Score=118.36  Aligned_cols=91  Identities=26%  Similarity=0.287  Sum_probs=80.5

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcc----cceEEEccCCCCCCeEEEEEEEeC
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD----DRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      .+|.|...+..+.+.+|+.++|.|.+.|.|.|.++|+|++..+.........    ...|.|.+++.+|+|.|+|.|.|.
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   85 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENK   85 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECS
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEEC
Confidence            4788988999999999999999999999999999999999988755333322    468999999999999999999999


Q ss_pred             CceEEEEEEEEEEee
Q psy15127        146 VGSISLRASLTVHLL  160 (633)
Q Consensus       146 ~g~~s~~~~l~V~~~  160 (633)
                      .|..+..+.|.|...
T Consensus        86 ~g~~~~~~~l~V~~~  100 (114)
T 2cqv_A           86 LGSRQAQVNLTVVDK  100 (114)
T ss_dssp             SCEEECCEEEEEECS
T ss_pred             CCcEEEEEEEEEECC
Confidence            999999999999876

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.58  E-value=1.1e-14  Score=130.18  Aligned_cols=109  Identities=10%  Similarity=0.092  Sum_probs=86.6

Q ss_pred             eCceEEEcCCCC--CCeEEEEEEe----------cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCC-CeEEEEeCCccC
Q psy15127         46 FGSVLGARGALS--DDQWKLIAKE----------ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPL-PTILWRRDDGKM  112 (633)
Q Consensus        46 ~~~~L~i~~v~~--~G~Y~C~a~~----------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~-p~i~W~~~~~~i  112 (633)
                      .++.|.|.+++.  +|.|+|.+.|          +..++.+... ....+.+|+.++|.|.+.+.+. +.+.|+|+|..+
T Consensus        52 ~~~~L~i~~~~~~d~G~Y~C~~~n~~~s~~~~l~V~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~  130 (175)
T 1fnl_A           52 QASSYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQA-PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDR  130 (175)
T ss_dssp             SCSEEEESSCCGGGCEEEEEECSSSCCCCCEEEEEECSSEEEEC-SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEE
T ss_pred             CceEEEEeCCCcccCEEEEEEeeCCcccccEEEEEeCCCceeeC-CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEc
Confidence            357899999998  9999999987          3334444433 4567899999999999987755 499999999876


Q ss_pred             CCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCce-EEEEEEEEEEe
Q psy15127        113 PTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS-ISLRASLTVHL  159 (633)
Q Consensus       113 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~s~~~~l~V~~  159 (633)
                      ..    ......|.|.+++.+|+|.|+|.|.|..+. .+..+.|.|.+
T Consensus       131 ~~----~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (175)
T 1fnl_A          131 KY----FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ  174 (175)
T ss_dssp             EE----EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             cC----CCCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence            32    224578999999999999999999997665 56677777765

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.58  E-value=1.1e-14  Score=135.38  Aligned_cols=109  Identities=29%  Similarity=0.463  Sum_probs=88.7

Q ss_pred             EEcCCCC--CCeEEEEEEe-------------cC-cCCeeeeCCCceEEEcCCeEEEEEEE-eccCCCeEEEEeCCccCC
Q psy15127         51 GARGALS--DDQWKLIAKE-------------AL-IKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMP  113 (633)
Q Consensus        51 ~i~~v~~--~G~Y~C~a~~-------------v~-~~p~~~~~~~~~~~~~G~~~~L~C~~-~~~p~p~i~W~~~~~~i~  113 (633)
                      .|.+++.  +|.|+|.+.|             +. .+|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|+|++..+.
T Consensus        72 ~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~  151 (217)
T 2vr9_A           72 TMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLD  151 (217)
T ss_dssp             CCBSSSCBCCEEEEEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEEC
T ss_pred             EeccCCcccCceEEEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCC
Confidence            5777777  9999999998             22 24566667778889999999999999 889999999999998875


Q ss_pred             C---------CCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy15127        114 T---------GRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHL  159 (633)
Q Consensus       114 ~---------~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~  159 (633)
                      .         .+.....++.|.|.+++.+|+|.|+|.|.|..|.....+.+.+..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~  206 (217)
T 2vr9_A          152 DLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ  206 (217)
T ss_dssp             CCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             cccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEE
Confidence            2         334445567899999999999999999999999876665555544

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.58  E-value=2.5e-15  Score=134.28  Aligned_cols=139  Identities=11%  Similarity=0.020  Sum_probs=96.1

Q ss_pred             CCCCCCccccccceeeEEEE-e-c-ccCCCCCceEEeeCceEEEcCCCC--CCeEEEEEEecCcC--------CeeeeCC
Q psy15127         12 PMSSPRAEIEPATRTNRVSI-S-G-DPGFDSRRSRSIFGSVLGARGALS--DDQWKLIAKEALIK--------PFPISEP   78 (633)
Q Consensus        12 ~~~~~~~~i~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~L~i~~v~~--~G~Y~C~a~~v~~~--------p~~~~~~   78 (633)
                      ....|.+.|+|+........ . + .......|+.+..+++|.|.+++.  +|.|+|.|.|....        ..+...+
T Consensus        22 ~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~  101 (176)
T 1hng_A           22 QMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMV  101 (176)
T ss_dssp             CCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCC
T ss_pred             CcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCC
Confidence            33456678897664432211 0 1 112345788888889999999998  99999999982111        1111122


Q ss_pred             C-ceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127         79 S-DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV  157 (633)
Q Consensus        79 ~-~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V  157 (633)
                      . ......+..++|.|.+.+.|.|.|+|+|+|..+..+       ..+.|.+++.+|+|.|+|.|.|..|..+..+.|.+
T Consensus       102 ~~p~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~-------~~~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~  174 (176)
T 1hng_A          102 SKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSL-------RQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC  174 (176)
T ss_dssp             CCCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEE-------SSSEEEEECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred             CCCEEEecCCcEEEEEEecCCCCcEEEEEECCEECCCC-------CcEEEEEEEccCCeEEEEEEEecCCCceecccccC
Confidence            2 222334557999999999999999999999876432       23566688899999999999999998777665544

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.57  E-value=3.1e-15  Score=126.37  Aligned_cols=113  Identities=21%  Similarity=0.204  Sum_probs=91.3

Q ss_pred             EEEEeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhh
Q psy15127        486 VRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARAR  565 (633)
Q Consensus       486 v~a~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i  565 (633)
                      |+|.|..|.|++|.....++|.+..|.+|.++                ++..++.+++.|+|++|        ...+|.|
T Consensus         3 V~A~n~~G~g~~S~~~~~~~t~~~~P~~P~~l----------------~~~~~~~~sv~l~W~~p--------~~~~g~i   58 (130)
T 1wfo_A            3 SGSSGRIGDGSPSHPPILERTLDDVPGPPMGI----------------LFPEVRTTSVRLIWQPP--------AAPNGII   58 (130)
T ss_dssp             CCCCCCCCCCCCCCCCSCCCCSCCCCCCCCCC----------------EEEEECSSEEEEECCCC--------SCCCSCC
T ss_pred             eEEEecccCCCCCCCcEEEEcCCCCCCCCCce----------------EEEecCCCEEEEEEcCC--------CCCCCce
Confidence            67899999999886433578888888877777                78889999999999965        4567889


Q ss_pred             cceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        566 LGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       566 ~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      ++| .|+|+..+...        ...  .........+.++|.+|+|++.|.|+|+|.|..|.|++|+
T Consensus        59 ~~Y-~v~~~~~~~~~--------~~~--~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  115 (130)
T 1wfo_A           59 LAY-QITHRLNTTTA--------NTA--TVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAE  115 (130)
T ss_dssp             CEE-EEEEEESSCCC--------SCC--CEEEECTTCCEEEEESCCSSSEEEEEEEEECSSCEEEEEE
T ss_pred             EEE-EEEEEECCCCC--------ceE--EEEEeCCCceEEEEcCCCCCCEEEEEEEEEeCCcCCCCcc
Confidence            999 99999875432        111  1123456789999999999999999999999999999874

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.57  E-value=1.6e-14  Score=136.65  Aligned_cols=116  Identities=26%  Similarity=0.414  Sum_probs=91.0

Q ss_pred             eeCceEEEcCCCC--CCeEEEEEEe------------cC----cCCeee-eCCCceEEEcCCeEEEEEEEeccCCCeEEE
Q psy15127         45 IFGSVLGARGALS--DDQWKLIAKE------------AL----IKPFPI-SEPSDATVLSGSVVEFVCRVGGDPLPTILW  105 (633)
Q Consensus        45 ~~~~~L~i~~v~~--~G~Y~C~a~~------------v~----~~p~~~-~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W  105 (633)
                      ..+++|.|.+++.  +|.|+|.+.+            +.    .+|.+. ..+....+.+|+.+.|.|.+.+.|.+.+.|
T Consensus        69 ~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W  148 (241)
T 3grw_A           69 HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW  148 (241)
T ss_dssp             GGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEE
T ss_pred             ccceEEEEEeCCcccCEEEEEEEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEE
Confidence            3456899999998  9999999988            21    123333 346677889999999999999999999999


Q ss_pred             Ee----CCccCCCCCe--EE----------cccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEee
Q psy15127        106 RR----DDGKMPTGRA--KI----------LDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLL  160 (633)
Q Consensus       106 ~~----~~~~i~~~~~--~~----------~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~  160 (633)
                      ++    ++..+..+..  ..          .....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+
T Consensus       149 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~  219 (241)
T 3grw_A          149 LKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGP  219 (241)
T ss_dssp             EEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC---
T ss_pred             EEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCC
Confidence            99    7877753321  11          12357999999999999999999999999999999999887

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.57  E-value=1.3e-14  Score=135.27  Aligned_cols=126  Identities=20%  Similarity=0.324  Sum_probs=85.5

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCCc--cC--------------------CCCCeEEccc-----ceEE
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDDG--KM--------------------PTGRAKILDD-----RSLQ  126 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~~--~i--------------------~~~~~~~~~~-----~~L~  126 (633)
                      ..|..+.+.+|++++|.|.+.+.+  .+.+.|+|...  ..                    ..+++....+     .+|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   84 (221)
T 3m8o_H            5 VESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQ   84 (221)
T ss_dssp             EEESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEE
T ss_pred             EccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEE
Confidence            456678899999999999998643  57899998431  10                    0134444322     2699


Q ss_pred             EccCCCCCCeEEEEEEEeCC--ceEEEEEEEEEEee---ccccc-cCCCceEEecCCcEEEEEeCCCCCCC--CeEEEEE
Q psy15127        127 IENVGPQDEGLYICDVENLV--GSISLRASLTVHLL---RDDFR-AEPKDTRVASGETALLECGPPKGQPE--PTLHWKK  198 (633)
Q Consensus       127 i~~v~~~d~G~Y~C~~~n~~--g~~s~~~~l~V~~~---~p~~~-~~~~~~~~~~g~~~~l~C~~~~~~p~--~~i~W~~  198 (633)
                      |.+++.+|+|.|.|.+.+..  ......+.|.|...   +|.+. ..+...  .+|+.++|.|.+....|.  +.+.|++
T Consensus        85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W~~  162 (221)
T 3m8o_H           85 MNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTWSE  162 (221)
T ss_dssp             ECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEESC
T ss_pred             ECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEEEE
Confidence            99999999999999998763  22334456777521   23333 223322  689999999995443776  4899998


Q ss_pred             CCEEe
Q psy15127        199 NGQFI  203 (633)
Q Consensus       199 ~~~~~  203 (633)
                      +|..+
T Consensus       163 ~g~~~  167 (221)
T 3m8o_H          163 SGQGV  167 (221)
T ss_dssp             CSTTC
T ss_pred             CCEEC
Confidence            87644

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*

Probab=99.57  E-value=3e-14  Score=138.59  Aligned_cols=258  Identities=14%  Similarity=0.090  Sum_probs=144.9

Q ss_pred             CCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127        254 HPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR  333 (633)
Q Consensus       254 ~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  333 (633)
                      .|++++|.|.+...+  .|.|.++|.....           ..+++|.|.++...|+|.|+|.+   .|.....+.+.|.
T Consensus        20 ~G~~v~l~C~~~~~~--~i~W~~~~~~~~~-----------~~~~~L~i~~~~~~d~G~YtC~~---~~~~~~~~~l~v~   83 (306)
T 3d85_D           20 PGEMVVLTCDTPEED--GITWTLDQSSEVL-----------GSGKTLTIQVKEFGDAGQYTCHK---GGEVLSHSLLLLH   83 (306)
T ss_dssp             CCEEEEEECSSSCCS--SCEEEETTCCCCC-----------EESSEEEEEECSGGGCEEEEEEE---TTEEEEEEEEEEE
T ss_pred             cCCcEEEECCCCCCC--cCEEEECCccccC-----------CCCCEEEEEecCcCCCceEEEee---CCcccceEEEEEE
Confidence            689999999987433  8999999974310           24678999999999999999999   3666656665554


Q ss_pred             ecccCCCceEEeCCCccccCCCCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCC
Q psy15127        334 EFCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPP  413 (633)
Q Consensus       334 ~~~~~p~p~~~~~~~~~~~g~p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p  413 (633)
                      .++    .                                       |.....+.   ...+.            +|. +
T Consensus        84 ~~~----~---------------------------------------~~~~t~i~---~~~~~------------pp~-~  104 (306)
T 3d85_D           84 KKE----D---------------------------------------GIWSTDIL---KDQKE------------PKN-K  104 (306)
T ss_dssp             EEE----T---------------------------------------TEECCCSS---CCCC---------------C-C
T ss_pred             ecc----C---------------------------------------Ccceeeee---cccCC------------CCC-C
Confidence            311    0                                       00000000   00000            011 3


Q ss_pred             CCcEEEEeeCC-eEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEE-eeeece---------EE----EecCCC
Q psy15127        414 AAPVILNTTRG-SVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAH-RITSTS---------IT----VSDLKP  478 (633)
Q Consensus       414 ~~~~~~~~~~~-~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~---------~~----i~~L~p  478 (633)
                      ..+.+...... .+..+|.+....    .....|...+.  .....|..-.. ......         +.    +..+-|
T Consensus       105 ~~lsC~~~~~~~~~~C~W~pg~~~----~l~~~~~~~r~--~~~~~~~~C~~~~~~~~~c~v~~~~~~~~~~c~~~~~cp  178 (306)
T 3d85_D          105 TFLRCEAKNYSGRFTCWWLTTIST----DLTFSVKSSRG--SSDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSACP  178 (306)
T ss_dssp             CCCEEEBSSSSSEEEEEEEESCCS----SEEEEEEEEEC--SSSCEEEEECCCEEEEEEEC--CEEEEEEEEEEETTCCT
T ss_pred             CcceEEcCCcccCcEEEecCCCCC----ceeEEEEEEec--CCCCcceECCCCCCCccceeecCccccceeeeeeccccc
Confidence            34555544433 899999988742    22334543321  11111221000 001111         11    234445


Q ss_pred             C----CeEEEEEEEEeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecc-cceEEEEEEEecCC
Q psy15127        479 D----TSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTA-STAVRITWEVSWGS  553 (633)
Q Consensus       479 ~----~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~si~v~W~~p~~~  553 (633)
                      +    ..|.|+|.|.|+.|....+.  .+..+....|.+|.++                ++..+. ...+.|+|++|   
T Consensus       179 ~~~~~~~y~~~V~A~n~lg~~s~~~--~f~~~~iVkPdPP~~l----------------~~~~~~~~~~l~vsW~~P---  237 (306)
T 3d85_D          179 AAEESLPIEVMVDAVHKLKYEQYTS--SFFIRDIIKPDPPKNL----------------QLKPLKNSRQVEVSWEYP---  237 (306)
T ss_dssp             TSCCCSCEEEEEEEEETTEEEEEEE--EECHHHHBCCCCCEEE----------------EEEEC----CEEEEEECC---
T ss_pred             cccccEEEEEEEEEEccCCccccce--EEEehhcEecCCCceE----------------EEEEecCCCcEEEEEcCC---
Confidence            5    48999999999999754331  1111223345545444                566543 38999999954   


Q ss_pred             Ccccccch--hhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEecccccccccc
Q psy15127        554 VPQHLLDE--ARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGAR  631 (633)
Q Consensus       554 ~p~~~~~~--~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~  631 (633)
                         ...+.  +-....| .|+|+..+...       |...  ..    ...+++.|   .+++.|.|+|+|.|..|.|.+
T Consensus       238 ---~~~~~p~~~~~L~Y-~vryr~~~~~~-------~~~~--~~----~~~ts~~l---~~~~~Y~vqVRa~~~~~~G~W  297 (306)
T 3d85_D          238 ---DTWSTPHSYFSLTF-CVQVQGKSKRE-------KKDR--VF----TDKTSATV---ICRKNASISVRAQDRYYSSSW  297 (306)
T ss_dssp             ---TTSCSCTTTSCEEE-EEEEECC-------------CE--EE----ESSSEEEE---CCCSSCEEEEEEEESSSCCCC
T ss_pred             ---CCCcCCCceeeEEE-EEEEEECCCCc-------cEEE--ee----ccccEEEE---eCCCeEEEEEEeccCCCCCCC
Confidence               21111  1145789 99999776533       4322  11    23466766   469999999999999999999


Q ss_pred             CC
Q psy15127        632 LD  633 (633)
Q Consensus       632 s~  633 (633)
                      ||
T Consensus       298 Se  299 (306)
T 3d85_D          298 SE  299 (306)
T ss_dssp             CC
T ss_pred             CC
Confidence            86

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.56  E-value=6.4e-15  Score=136.57  Aligned_cols=127  Identities=20%  Similarity=0.290  Sum_probs=87.2

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCC--ccC-----------------CCCCeEEcc-----cceEEEcc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDD--GKM-----------------PTGRAKILD-----DRSLQIEN  129 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~--~~i-----------------~~~~~~~~~-----~~~L~i~~  129 (633)
                      .+|..+.+.+|++++|.|.+.+.+  .+.+.|+|+.  ..+                 ..+++....     +..|.|.+
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   84 (215)
T 1c5d_H            5 LESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNS   84 (215)
T ss_dssp             EEECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESS
T ss_pred             EcCCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECC
Confidence            346778899999999999998754  4789999863  211                 012333332     24899999


Q ss_pred             CCCCCCeEEEEEEEeCCce---EEEEEEEEEEee---ccccccCCCceEEecCCcEEEEEeCCCCCCCC-eEEEEECCEE
Q psy15127        130 VGPQDEGLYICDVENLVGS---ISLRASLTVHLL---RDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQF  202 (633)
Q Consensus       130 v~~~d~G~Y~C~~~n~~g~---~s~~~~l~V~~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~~~~  202 (633)
                      ++.+|+|.|.|.+.+..+.   ....+.|.|...   +|.+...+....+.+|+.+.|.|.+....|.+ .+.|++++..
T Consensus        85 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~  164 (215)
T 1c5d_H           85 LQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALS  164 (215)
T ss_dssp             CCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTC
T ss_pred             CCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCcc
Confidence            9999999999999886421   223457777742   24443322223357899999999954344777 9999988653

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.56  E-value=6.4e-15  Score=141.81  Aligned_cols=134  Identities=22%  Similarity=0.320  Sum_probs=94.0

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC--CccC-----------------CCCCeEEcc----cceEEE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD--DGKM-----------------PTGRAKILD----DRSLQI  127 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~--~~~i-----------------~~~~~~~~~----~~~L~i  127 (633)
                      .+.+...|..+.+.+|++++|.|.+. .+.+.+.|+|.  +...                 ..+++....    +.+|.|
T Consensus        26 ~~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I  104 (268)
T 3pl6_D           26 GAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKI  104 (268)
T ss_dssp             -SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEE
T ss_pred             CceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEE
Confidence            34566677788999999999999986 57789999992  2211                 114444443    457999


Q ss_pred             ccCCCCCCeEEEEEEEeC--CceEEEEEEEEEEee-----ccccc-cCCCceEEecCCcEEEEEeCCCCCCCC-eEEEEE
Q psy15127        128 ENVGPQDEGLYICDVENL--VGSISLRASLTVHLL-----RDDFR-AEPKDTRVASGETALLECGPPKGQPEP-TLHWKK  198 (633)
Q Consensus       128 ~~v~~~d~G~Y~C~~~n~--~g~~s~~~~l~V~~~-----~p~~~-~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~  198 (633)
                      .+++.+|+|.|.|.+.+.  .........|.|...     +|.+. ..+....+.+|+.++|.|.+....|.+ .+.|++
T Consensus       105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~  184 (268)
T 3pl6_D          105 QRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV  184 (268)
T ss_dssp             CSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             CCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEE
Confidence            999999999999999973  333445566777752     13322 233444455699999999954335545 999999


Q ss_pred             CCEEecc
Q psy15127        199 NGQFIDL  205 (633)
Q Consensus       199 ~~~~~~~  205 (633)
                      +|..+..
T Consensus       185 ~g~~l~~  191 (268)
T 3pl6_D          185 NGKEVHS  191 (268)
T ss_dssp             SSSEECT
T ss_pred             CCEECCC
Confidence            9988854

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.56  E-value=1.9e-14  Score=128.81  Aligned_cols=109  Identities=17%  Similarity=0.191  Sum_probs=86.9

Q ss_pred             CceEEEcCCCC--CCeEEEEEEe----------cCcCCeeeeCCCceEEEcCCeEEEEEEEe-ccCCCeEEEEeCCccCC
Q psy15127         47 GSVLGARGALS--DDQWKLIAKE----------ALIKPFPISEPSDATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKMP  113 (633)
Q Consensus        47 ~~~L~i~~v~~--~G~Y~C~a~~----------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~-~~p~p~i~W~~~~~~i~  113 (633)
                      ++.|.|.+++.  +|.|+|.+.+          +..++.+.. +....+.+|+.+.|.|.+. +.|.+.+.|+|+|..+.
T Consensus        50 ~~~L~i~~v~~~d~G~Y~C~~~~~~~s~~~~l~V~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~  128 (176)
T 1f2q_A           50 NSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQ-ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALK  128 (176)
T ss_dssp             SSEEEECSCCGGGCEEEEEECTTSSCCCCEEEEEECSSEEEE-ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECC
T ss_pred             ceEEEEeccceecCEEEEEEcCCccccccEEEEEeCcceeec-CCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEe
Confidence            57899999998  9999999988          333333333 3446788999999999994 66777999999999874


Q ss_pred             CCCeEEcccceEEEccCCCCCCeEEEEEEEeCCce-EEEEEEEEEEee
Q psy15127        114 TGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS-ISLRASLTVHLL  160 (633)
Q Consensus       114 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~s~~~~l~V~~~  160 (633)
                      ..    ..++.|.|.+++.+|+|.|+|.|.|..+. .+..+.|.|..+
T Consensus       129 ~~----~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~  172 (176)
T 1f2q_A          129 YW----YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKA  172 (176)
T ss_dssp             SC----CCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECS
T ss_pred             ee----cCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecC
Confidence            32    13568999999999999999999997544 566788888876

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens}

Probab=99.55  E-value=1.5e-14  Score=147.66  Aligned_cols=202  Identities=15%  Similarity=0.136  Sum_probs=138.2

Q ss_pred             EEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEE
Q psy15127        370 GLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVE  449 (633)
Q Consensus       370 g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~  449 (633)
                      ..|.|....    ....+.|.+..+|               ++|.++.+.......+.++|.++.+.+.++.+...|.|.
T Consensus       261 ~n~~C~~~~----~~~g~~l~vg~PP---------------~~P~nlsC~s~~~~sltCsW~pg~dt~l~G~~~t~YtL~  321 (483)
T 3e0g_A          261 TNVVFTTED----NIFGTVIFAGYPP---------------DTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLV  321 (483)
T ss_dssp             EEEEEEESS----CEEEEEEEEECCC---------------CCCEEEEEEBSSTTEEEEEEECCSCCSCCGGGCCEEEEE
T ss_pred             ceEEEecCC----cccceEEECcCCC---------------CCCCccEEEecCCCEEEEEECCCCcCCcCCCCCeeEEEE
Confidence            458998532    2344567776554               457788888777789999999988653222348899999


Q ss_pred             EEEecCCCCeEEEEEe-----eeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCcee-ecCCCCCCCcchHHHHHH
Q psy15127        450 YFSSDLQTGWVVAAHR-----ITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITR-TLGLNSLVPQHLLDEARA  523 (633)
Q Consensus       450 ~~~~~~~~~~~~~~~~-----~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~-t~~~~p~~~~~~~~~~~~  523 (633)
                      |+..+.   .. ....     .....+.|.+|.+.+.|.|+|.|.|..|.+. +. . .+. +....|.+|.++      
T Consensus       322 y~~~g~---~~-~C~~~~~~~~~~~~C~~~~l~~~t~Y~f~V~A~N~lG~~~-S~-~-~~~~~~~VkP~PP~nl------  388 (483)
T 3e0g_A          322 ESFSGK---YV-RLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQ-ST-I-LVNITEKVYPHTPTSF------  388 (483)
T ss_dssp             ETTTCC---EE-EECCCSSCSCSCEEEEEECCTTCCCEEEEEEEECSSCEEE-EE-E-EECGGGGBCCCCCEEE------
T ss_pred             EEECCC---Cc-cccCCcccCCCEEEEEEccCCCCcEEEEEEEEEeCCCCcc-cc-e-EEEeccccCCCCCeee------
Confidence            875432   11 1111     1235688999999999999999999999886 32 2 232 233345555545      


Q ss_pred             HhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEee-cCCcc
Q psy15127        524 RLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVM-NAATT  602 (633)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~  602 (633)
                                .+..++++++.|+|++|        ...++.+..| .|+|+..+...      .|...   .+. .....
T Consensus       389 ----------~v~~~~stsl~LsW~~P--------~~~~~~~L~Y-eVrYr~~~~~~------~~~~v---sv~~~~~~~  440 (483)
T 3e0g_A          389 ----------KVKDINSTAVKLSWHLP--------GNFAKINFLC-EIEIKKSNSVQ------EQRNV---TIQGVENSS  440 (483)
T ss_dssp             ----------EECCSSSSSCCEEEECC--------SCCTTSBCCC-EEEEECSSSCC------CEEEC---CCBCCSSSB
T ss_pred             ----------EEEEecCCeEEEEECCC--------CCCCCceEEE-EEEEEECCCCC------ceEEE---EEeccCCce
Confidence                      67777889999999954        3456778999 99999876542      24321   111 11234


Q ss_pred             ceEEeeccccceeEEEEEeccccccccccC
Q psy15127        603 TSYTVTHLRKFTKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       603 ~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s  632 (633)
                      .+++|.+|+|++.|.|+|+|. ..|.|.+|
T Consensus       441 ~s~~l~~L~PgT~Y~vrVRA~-~~g~g~WS  469 (483)
T 3e0g_A          441 YLVALDKLNPYTLYTFRIRCS-TETFWKWS  469 (483)
T ss_dssp             CCCCCCSCCSSSSCEEEEECC-CSSCCCCC
T ss_pred             eEEEEeccCCCcEEEEEEEEe-eCCCCCcC
Confidence            478999999999999999999 77885444

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=7.2e-15  Score=122.94  Aligned_cols=112  Identities=16%  Similarity=0.142  Sum_probs=90.1

Q ss_pred             EEEEEeccccCCCCCCCCceeecCCCCCCCc-chHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhh
Q psy15127        485 IVRAENSHGLGIPSPVSPITRTLGLNSLVPQ-HLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEAR  563 (633)
Q Consensus       485 ~v~a~n~~G~g~~s~~~~~~~t~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~  563 (633)
                      +|+|.|..|.|+++... .++|.+..|..+| ++                ++..++.++|.|+|++|      .....++
T Consensus         3 ~V~A~n~~G~g~~s~~~-~~~T~~~~P~~~P~~l----------------~~~~~~~~sv~l~W~~p------~~~~~~g   59 (124)
T 2ed9_A            3 SGSSGNRYGPGVSTDDI-TVVTLSDVPSAPPQNV----------------SLEVVNSRSIKVSWLPP------PSGTQNG   59 (124)
T ss_dssp             SCCCCCCCCCCCCCCCC-CCCCCCCCCSSCCBSC----------------CEEEEETTEEEEECBCC------CTTTCCS
T ss_pred             eEEEEeCCccCCCCCCE-EEEcCCCCCCCCCeee----------------EEEEcCCCEEEEEEECc------CCcCCCc
Confidence            57899999999988766 5778777777544 55                78888999999999954      2223688


Q ss_pred             hhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        564 ARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       564 ~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      .|.+| .|+|+......       |..      ......++++|.+|+|++.|.|+|+|.|..|.|++|+
T Consensus        60 ~i~~Y-~v~~~~~~~~~-------~~~------~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  115 (124)
T 2ed9_A           60 FITGY-KIRHRKTTRRG-------EME------TLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSN  115 (124)
T ss_dssp             CCCEE-EEEEEESSSSC-------CEE------EECSSCSEEEEECCCSSCEEEECEEEECSSCBCCCCC
T ss_pred             EEeEE-EEEEEECCCCc-------ceE------EecCCcCEEEEcCCCCCCEEEEEEEEEcCCccCCCCC
Confidence            99999 99999876543       321      1346688999999999999999999999999999985

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.55  E-value=2.6e-14  Score=138.32  Aligned_cols=134  Identities=23%  Similarity=0.357  Sum_probs=93.7

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC------------------CCCCeEEcc----cceEE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM------------------PTGRAKILD----DRSLQ  126 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i------------------~~~~~~~~~----~~~L~  126 (633)
                      .+.+...|..+.+.+|++++|.|.+.+.+.+.+.|+|++  ...                  ..+++....    +.+|.
T Consensus        24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~  103 (279)
T 2wbj_D           24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT  103 (279)
T ss_dssp             CCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred             cceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence            356677788899999999999999988888899999964  111                  023444432    24799


Q ss_pred             EccCCCCCCeEEEEEEEeCCc------eEEEEEEEEEEee-----cccccc-CCCceEEecCCcEEEEEeCCCCCCC-Ce
Q psy15127        127 IENVGPQDEGLYICDVENLVG------SISLRASLTVHLL-----RDDFRA-EPKDTRVASGETALLECGPPKGQPE-PT  193 (633)
Q Consensus       127 i~~v~~~d~G~Y~C~~~n~~g------~~s~~~~l~V~~~-----~p~~~~-~~~~~~~~~g~~~~l~C~~~~~~p~-~~  193 (633)
                      |.+++.+|+|.|.|.+.+..+      .....+.|.|...     +|.+.. .+....+.+|+.+.|.|.+....|. +.
T Consensus       104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~  183 (279)
T 2wbj_D          104 VTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE  183 (279)
T ss_dssp             ESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEE
T ss_pred             EccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcE
Confidence            999999999999999998421      1223456777752     133322 2222334478999999995433454 79


Q ss_pred             EEEEECCEEec
Q psy15127        194 LHWKKNGQFID  204 (633)
Q Consensus       194 i~W~~~~~~~~  204 (633)
                      |.|+++|..+.
T Consensus       184 v~W~k~g~~l~  194 (279)
T 2wbj_D          184 LSWWVNGKEVH  194 (279)
T ss_dssp             EEEEETTEECC
T ss_pred             EEEEECCEECC
Confidence            99999998765

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.55  E-value=4.3e-14  Score=136.03  Aligned_cols=133  Identities=15%  Similarity=0.185  Sum_probs=87.5

Q ss_pred             CceEEEcCCCC--CCeEEEEEEecC------cCCee---eeCCCceEEEcCCeEEEEEEE---eccCCCeEEEEeCCc-c
Q psy15127         47 GSVLGARGALS--DDQWKLIAKEAL------IKPFP---ISEPSDATVLSGSVVEFVCRV---GGDPLPTILWRRDDG-K  111 (633)
Q Consensus        47 ~~~L~i~~v~~--~G~Y~C~a~~v~------~~p~~---~~~~~~~~~~~G~~~~L~C~~---~~~p~p~i~W~~~~~-~  111 (633)
                      +++|.|.+++.  +|.|+|.+.+..      ....+   ...|....+.+|+.++|.|.+   .+.|.+.+.|++++. .
T Consensus        83 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~  162 (268)
T 3mj6_A           83 DGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSH  162 (268)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECCCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTC
T ss_pred             EEEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEeccCCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCC
Confidence            37899999998  999999998710      11111   234567889999999999999   567889999999433 2


Q ss_pred             CCC----------------------CCeEE-----cccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEeecccc
Q psy15127        112 MPT----------------------GRAKI-----LDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDF  164 (633)
Q Consensus       112 i~~----------------------~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~  164 (633)
                      +..                      .+...     ..+..|.|.+++.+|+|.|+|.|.|..|..+..+.|.|...+|.+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~~  242 (268)
T 3mj6_A          163 TEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQR  242 (268)
T ss_dssp             SSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC----
T ss_pred             CcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcCCCee
Confidence            111                      11111     235689999999999999999999999999999999997666777


Q ss_pred             ccCCCceEEecCCcE
Q psy15127        165 RAEPKDTRVASGETA  179 (633)
Q Consensus       165 ~~~~~~~~~~~g~~~  179 (633)
                      ...|....+.+|+.+
T Consensus       243 ~~~p~~~~~~~~q~~  257 (268)
T 3mj6_A          243 TISPTPPTDKGQQGI  257 (268)
T ss_dssp             ---------------
T ss_pred             eeCCCCCCCCcceec
Confidence            778877777766654

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=1.9e-14  Score=119.19  Aligned_cols=107  Identities=28%  Similarity=0.430  Sum_probs=88.5

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCC--CCeEEcccceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT--GRAKILDDRSLQIENVGPQDEGLYICDVENLVG  147 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g  147 (633)
                      .+|.|...+....+.+|+.++|.|.+.|.|.+.+.|+|++..+..  .+.....++.|.|.+++.+|+|.|+|.|.|..|
T Consensus         7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   86 (118)
T 2eo9_A            7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSG   86 (118)
T ss_dssp             CSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEECSSC
T ss_pred             CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEcCCC
Confidence            578888889999999999999999999999999999999998853  456666778999999999999999999999999


Q ss_pred             eEEEEEEEEEEeec-cccccCCCceEEecC
Q psy15127        148 SISLRASLTVHLLR-DDFRAEPKDTRVASG  176 (633)
Q Consensus       148 ~~s~~~~l~V~~~~-p~~~~~~~~~~~~~g  176 (633)
                      ..+..+.|.|..++ |.+...+.+..+.+|
T Consensus        87 ~~~~~~~l~V~~~~~p~~~~~~~~~~~~~G  116 (118)
T 2eo9_A           87 EATWSAYIEVQEFGVPVQPPRPTDPNLIPS  116 (118)
T ss_dssp             EEEEECCEEEECCSCCCCCCCCCCCCCCCC
T ss_pred             cEEEEEEEEEEeCCCCccCCCCCCCccCCC
Confidence            99889999998762 223334444444444

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.55  E-value=8.7e-15  Score=134.97  Aligned_cols=143  Identities=15%  Similarity=0.228  Sum_probs=101.9

Q ss_pred             CCCCccccccceeeEEEE----ecc-cCCCCCceEEeeCceEEEcCCCC--CCeEEEEEEe--------------cCcCC
Q psy15127         14 SSPRAEIEPATRTNRVSI----SGD-PGFDSRRSRSIFGSVLGARGALS--DDQWKLIAKE--------------ALIKP   72 (633)
Q Consensus        14 ~~~~~~i~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~L~i~~v~~--~G~Y~C~a~~--------------v~~~p   72 (633)
                      +.|.+.|.|+........    ++. ......|+.+.. +.|.|.+++.  +|.|+|.+.+              +..+|
T Consensus        30 ~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p  108 (209)
T 1nbq_A           30 GFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP-TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPP  108 (209)
T ss_dssp             SCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET-TEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBCC
T ss_pred             CCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec-cEEEEeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecCC
Confidence            346777886554332110    000 012234555443 8899999998  9999999987              34456


Q ss_pred             eeeeCCCceEEEcCCeEEEEEEE-eccCCCeEEEEeCCccCCCCCe----------EE-cccceEEEccCCCCCCeEEEE
Q psy15127         73 FPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRA----------KI-LDDRSLQIENVGPQDEGLYIC  140 (633)
Q Consensus        73 ~~~~~~~~~~~~~G~~~~L~C~~-~~~p~p~i~W~~~~~~i~~~~~----------~~-~~~~~L~i~~v~~~d~G~Y~C  140 (633)
                      .+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.....          .. ...+.|.|.+++.+|+|.|+|
T Consensus       109 ~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  188 (209)
T 1nbq_A          109 SKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSC  188 (209)
T ss_dssp             CCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEE
T ss_pred             cCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEE
Confidence            65555556678999999999997 8899999999999988754321          11 135689999999999999999


Q ss_pred             EEEeCCceE--EEEEEEEE
Q psy15127        141 DVENLVGSI--SLRASLTV  157 (633)
Q Consensus       141 ~~~n~~g~~--s~~~~l~V  157 (633)
                      .|.|..|..  +..+.|.|
T Consensus       189 ~a~n~~g~~~~s~~v~l~V  207 (209)
T 1nbq_A          189 EARNGYGTPMTSNAVRMEA  207 (209)
T ss_dssp             EEECSSSCCEECCCBCCEE
T ss_pred             EEeCCcCcccccccEEEEE
Confidence            999999986  44444444

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.55  E-value=4.5e-14  Score=112.73  Aligned_cols=90  Identities=26%  Similarity=0.283  Sum_probs=78.2

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCe-EEc----ccceEEEccCCCCCCeEEEEEEEe
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRA-KIL----DDRSLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~-~~~----~~~~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                      .+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+..... ...    ....|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   83 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEE
Confidence            568898999999999999999999999999999999999998875432 221    224799999999999999999999


Q ss_pred             CCceEEEEEEEEEEe
Q psy15127        145 LVGSISLRASLTVHL  159 (633)
Q Consensus       145 ~~g~~s~~~~l~V~~  159 (633)
                      ..|..+..+.|.|..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           84 IAGETSSHAFLLVQA   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCcEEEEEEEEEec
Confidence            999998888888874

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.54  E-value=3.4e-14  Score=135.13  Aligned_cols=111  Identities=14%  Similarity=0.118  Sum_probs=83.2

Q ss_pred             CceEEEcCCCC--CCeEEEEEEe-----------------cCc---CCeee-eCCCceEEEcCCeEEEEEEEeccCCCeE
Q psy15127         47 GSVLGARGALS--DDQWKLIAKE-----------------ALI---KPFPI-SEPSDATVLSGSVVEFVCRVGGDPLPTI  103 (633)
Q Consensus        47 ~~~L~i~~v~~--~G~Y~C~a~~-----------------v~~---~p~~~-~~~~~~~~~~G~~~~L~C~~~~~p~p~i  103 (633)
                      +.+|.|.+++.  +|.|+|.+.+                 +..   +|.+. ..+....+.+|+.+.|.|.+.+.|.|.|
T Consensus        89 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v  168 (250)
T 2fbo_J           89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANV  168 (250)
T ss_dssp             SCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEE
T ss_pred             cceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCee
Confidence            35899999998  9999999988                 111   23333 2334566778999999999999999999


Q ss_pred             EEEeCCccCCCC-------------------------CeEEcccceEEEccCCCCCCeEEEEEEEeCC---ceEEEEEEE
Q psy15127        104 LWRRDDGKMPTG-------------------------RAKILDDRSLQIENVGPQDEGLYICDVENLV---GSISLRASL  155 (633)
Q Consensus       104 ~W~~~~~~i~~~-------------------------~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~---g~~s~~~~l  155 (633)
                      +|+|++..+...                         +........|.|.+++.+|+|.|+|.|.|..   |.....+.|
T Consensus       169 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l  248 (250)
T 2fbo_J          169 TWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTIL  248 (250)
T ss_dssp             EEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEEE
T ss_pred             EEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccceeEEE
Confidence            999998877541                         1111134689999999999999999999954   445555555


Q ss_pred             EE
Q psy15127        156 TV  157 (633)
Q Consensus       156 ~V  157 (633)
                      .|
T Consensus       249 ~V  250 (250)
T 2fbo_J          249 KV  250 (250)
T ss_dssp             EC
T ss_pred             eC
Confidence            43

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.54  E-value=5.2e-14  Score=131.98  Aligned_cols=115  Identities=27%  Similarity=0.434  Sum_probs=92.3

Q ss_pred             eCceEEEcCCCC--CCeEEEEEEe------------cC----cCCeeee-CCCceEEEcCCeEEEEEEEeccCCCeEEEE
Q psy15127         46 FGSVLGARGALS--DDQWKLIAKE------------AL----IKPFPIS-EPSDATVLSGSVVEFVCRVGGDPLPTILWR  106 (633)
Q Consensus        46 ~~~~L~i~~v~~--~G~Y~C~a~~------------v~----~~p~~~~-~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~  106 (633)
                      .+++|.|.+++.  +|.|+|.+.|            +.    .+|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|+
T Consensus        74 ~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~  153 (231)
T 3ojm_B           74 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI  153 (231)
T ss_dssp             GGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEE
T ss_pred             CcceEEEecCCcccCEEEEEEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEE
Confidence            346899999998  9999999988            21    2333333 356778999999999999999999999999


Q ss_pred             e----CCccCCCCCeE---E--------cccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEee
Q psy15127        107 R----DDGKMPTGRAK---I--------LDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLL  160 (633)
Q Consensus       107 ~----~~~~i~~~~~~---~--------~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~  160 (633)
                      +    +|..+..+...   .        ...+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+
T Consensus       154 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  222 (231)
T 3ojm_B          154 KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPK  222 (231)
T ss_dssp             EECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             ECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecC
Confidence            9    77766433211   1        12357999999999999999999999999999999999877

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=3.1e-14  Score=113.93  Aligned_cols=92  Identities=30%  Similarity=0.508  Sum_probs=81.7

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCC--CCCeEEcccceEEEccCCCCCCeEEEEEEEeCC
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP--TGRAKILDDRSLQIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      ..+|.|...|....+.+|+.+.|.|.+.+.|.+.+.|+|++..+.  ..+.....++.|.|.+++.+|+|.|+|.|.|..
T Consensus         6 ~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~   85 (100)
T 2edj_A            6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSS   85 (100)
T ss_dssp             CSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEECSS
T ss_pred             CCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEcCC
Confidence            357889999999999999999999999999999999999998875  345555667899999999999999999999999


Q ss_pred             ceEEEEEEEEEEee
Q psy15127        147 GSISLRASLTVHLL  160 (633)
Q Consensus       147 g~~s~~~~l~V~~~  160 (633)
                      |..+..+.|.|..+
T Consensus        86 g~~~~~~~l~V~~~   99 (100)
T 2edj_A           86 GETSWSAVLDVTES   99 (100)
T ss_dssp             CCCBCCEEEEEESC
T ss_pred             CCEEEEEEEEEecC
Confidence            99888888988865

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.54  E-value=2.6e-14  Score=131.69  Aligned_cols=118  Identities=17%  Similarity=0.197  Sum_probs=93.5

Q ss_pred             CceEEeeCceEEEcCCCC--CCeEEEEEEe-------------cC---cCCeeeeCCCceEEEcCCeEEEEEEEeccCCC
Q psy15127         40 RRSRSIFGSVLGARGALS--DDQWKLIAKE-------------AL---IKPFPISEPSDATVLSGSVVEFVCRVGGDPLP  101 (633)
Q Consensus        40 ~~~~~~~~~~L~i~~v~~--~G~Y~C~a~~-------------v~---~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p  101 (633)
                      .|+.+..+++|.|.+++.  +|.|+|.+.+             +.   ..|.+...+..  +.+|+.+.|.|.+.+.| |
T Consensus        63 ~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p  139 (208)
T 3r4d_A           63 GREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-A  139 (208)
T ss_dssp             SSEEECTTSCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-C
T ss_pred             ceeEEecCCeEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-C
Confidence            466777788999999998  9999999988             22   22555555544  88999999999998866 7


Q ss_pred             eEEEEeCCccCCCCC-eEEcc-cceEEEccCCCCCCeEEEEEEEeCCce-EEEEEEEEEEee
Q psy15127        102 TILWRRDDGKMPTGR-AKILD-DRSLQIENVGPQDEGLYICDVENLVGS-ISLRASLTVHLL  160 (633)
Q Consensus       102 ~i~W~~~~~~i~~~~-~~~~~-~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~s~~~~l~V~~~  160 (633)
                      .+.|++++..+..+. ..... ++.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..+
T Consensus       140 ~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~  201 (208)
T 3r4d_A          140 NIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFD  201 (208)
T ss_dssp             EEEEEETTEECCCCSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC--
T ss_pred             ceEEEECCEeCCCCCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeC
Confidence            999999999886543 33333 478999999999999999999999988 466777777765

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.54  E-value=3.9e-14  Score=111.54  Aligned_cols=88  Identities=19%  Similarity=0.238  Sum_probs=75.9

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccCCCCCeEEc--ccceEEEccCCCCCCeEEEEEEEeCC
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKMPTGRAKIL--DDRSLQIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      +|.|...+..+.+.+|+.+.|.|.+.|.|.|.++|+|++  ..+........  ....|.|.+++.+|+|.|+|.|.|..
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~   81 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNEL   81 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETT
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEcCC
Confidence            688888888899999999999999999999999999999  87765532222  23679999999999999999999999


Q ss_pred             ceEEEEEEEEEE
Q psy15127        147 GSISLRASLTVH  158 (633)
Q Consensus       147 g~~s~~~~l~V~  158 (633)
                      |..+..+.|.|.
T Consensus        82 G~~~~~~~l~V~   93 (93)
T 1wit_A           82 GEDEAIFEVIVQ   93 (93)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             CeEEEEEEEEEC
Confidence            998888888773

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.53  E-value=1.4e-13  Score=123.99  Aligned_cols=112  Identities=18%  Similarity=0.248  Sum_probs=90.1

Q ss_pred             ceEEEcCCCCCCeEEEEEEe---------cCcCCeeeeCCCceEEEcCCeEEEEEEEeccC-CCeEEEEe---CCc-cCC
Q psy15127         48 SVLGARGALSDDQWKLIAKE---------ALIKPFPISEPSDATVLSGSVVEFVCRVGGDP-LPTILWRR---DDG-KMP  113 (633)
Q Consensus        48 ~~L~i~~v~~~G~Y~C~a~~---------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p-~p~i~W~~---~~~-~i~  113 (633)
                      ..|.|.....+|.|+|.|.|         +..+|.+...+....+.+|+.+.|.|.+.+.| .+.+.|++   ++. .+.
T Consensus        51 ~~l~i~~~~d~G~Y~C~~~n~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~  130 (184)
T 3b5h_A           51 TEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALM  130 (184)
T ss_dssp             EEEEECGGGCCEEEEEEEESTTSCEEEEEECCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECC
T ss_pred             EEEEEechhhCeEEEEEEECCcCcEEEEEEecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEee
Confidence            35667633339999999996         67788888888888899999999999999999 79999999   444 332


Q ss_pred             C---CCeEEccc---ceEEEccCC-CCCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy15127        114 T---GRAKILDD---RSLQIENVG-PQDEGLYICDVENLVGSISLRASLTVHL  159 (633)
Q Consensus       114 ~---~~~~~~~~---~~L~i~~v~-~~d~G~Y~C~~~n~~g~~s~~~~l~V~~  159 (633)
                      .   +++....+   ..|.|.+++ .+|+|.|+|.|.|..|.....+.|.|..
T Consensus       131 ~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  183 (184)
T 3b5h_A          131 NGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS  183 (184)
T ss_dssp             TTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             cCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEec
Confidence            2   34444332   489999999 9999999999999999988888888864

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.53  E-value=4.5e-15  Score=139.61  Aligned_cols=173  Identities=12%  Similarity=0.013  Sum_probs=103.6

Q ss_pred             EEEEecCcCCeeeeCCCceE--EEcCCeEEEEEEEecc---CCC-eEEEEeCCccCCCCC---------eEEcccceEEE
Q psy15127         63 LIAKEALIKPFPISEPSDAT--VLSGSVVEFVCRVGGD---PLP-TILWRRDDGKMPTGR---------AKILDDRSLQI  127 (633)
Q Consensus        63 C~a~~v~~~p~~~~~~~~~~--~~~G~~~~L~C~~~~~---p~p-~i~W~~~~~~i~~~~---------~~~~~~~~L~i  127 (633)
                      |.+.+- .+|.+...++...  +.+|++++|.|.+.+.   |.+ .|+|+|++..+....         ........|.|
T Consensus         8 ~~~~~~-~~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I   86 (239)
T 1i1c_A            8 CGCTGS-EVSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPI   86 (239)
T ss_dssp             ----------CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEEC
T ss_pred             CCCCCC-cCCEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEE
Confidence            444333 3344434444444  7899999999999876   766 899999987654221         01112347999


Q ss_pred             ccCCCCCCeEEEEEEEeCCceE--EEEEEE--EEEeeccccccCCCceEEecCCcEEEEEeCCCCCCC-CeEEEEECCEE
Q psy15127        128 ENVGPQDEGLYICDVENLVGSI--SLRASL--TVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPE-PTLHWKKNGQF  202 (633)
Q Consensus       128 ~~v~~~d~G~Y~C~~~n~~g~~--s~~~~l--~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~i~W~~~~~~  202 (633)
                      .+++.+|+|.|+|.+.+..+..  ...+.+  .+..+ |.+.+.+.......|+.+.|.|.+...+|. ..|.|++||..
T Consensus        87 ~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~-P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~  165 (239)
T 1i1c_A           87 VERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRG-PQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQP  165 (239)
T ss_dssp             CHHHHHTTCCEEEEEECSSSSSCEEEEECCCSSCCBC-CEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             EhhHccCCCeEEEEEecccCCCCcEEEEecCCCCCcC-CEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEE
Confidence            9999999999999999987753  223322  22333 544443333223458899999995433665 59999999998


Q ss_pred             eccCCCee-EEeccceeeeE---EE-------eeeEEEEeecCCCC
Q psy15127        203 IDLESSKS-LDLSRRTLGWL---RV-------RPLYWNVARPRANL  237 (633)
Q Consensus       203 ~~~~~~~~-~~~~~~~~~~~---~~-------~g~y~C~a~~~~~~  237 (633)
                      +....... ....++.+.+.   .+       .+.|+|.+.|....
T Consensus       166 l~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~  211 (239)
T 1i1c_A          166 QENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE  211 (239)
T ss_dssp             CSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             CCCceecCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence            75321111 11222222221   11       37899999987643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.53  E-value=1.5e-14  Score=144.92  Aligned_cols=111  Identities=14%  Similarity=0.057  Sum_probs=91.5

Q ss_pred             eCceEEEcCCCC--CC-eEEEEEEe------------cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCc
Q psy15127         46 FGSVLGARGALS--DD-QWKLIAKE------------ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG  110 (633)
Q Consensus        46 ~~~~L~i~~v~~--~G-~Y~C~a~~------------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~  110 (633)
                      .+++|.|.+++.  +| .|+|.|.|            |..+|.+    ....+.+|+.++|.|.+.|.|.|.|+|+|+|.
T Consensus       210 ~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~  285 (347)
T 2ifg_A          210 PSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGS  285 (347)
T ss_dssp             SEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETTE
T ss_pred             ccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCCee----eeccCccCceEEEEEEeeecCCCcEEEEeCCE
Confidence            457899999998  99 99999998            4445554    11224679999999999999999999999999


Q ss_pred             cCCCCCeEEc-----------ccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEee
Q psy15127        111 KMPTGRAKIL-----------DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLL  160 (633)
Q Consensus       111 ~i~~~~~~~~-----------~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~  160 (633)
                      .+..+.....           .+++|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+
T Consensus       286 ~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  346 (347)
T 2ifg_A          286 VLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN  346 (347)
T ss_dssp             ECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCC
T ss_pred             ECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCC
Confidence            8876543321           2457999999999999999999999999999999888765

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.53  E-value=7.3e-14  Score=114.94  Aligned_cols=92  Identities=26%  Similarity=0.508  Sum_probs=81.1

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCC--CCeEEcccc----eEEEccCCCCCCeEEEEEE
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT--GRAKILDDR----SLQIENVGPQDEGLYICDV  142 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~--~~~~~~~~~----~L~i~~v~~~d~G~Y~C~~  142 (633)
                      ..+|.|+..|.++.+.+|+.++|.|.+.|.|.+.+.|+|++..+..  .+.....+.    +|.|.+++.+|+|.|+|.|
T Consensus        13 ~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   92 (116)
T 2kkq_A           13 KRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSA   92 (116)
T ss_dssp             CBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEE
T ss_pred             CCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEE
Confidence            4578999999999999999999999999999999999999998864  344444332    7999999999999999999


Q ss_pred             EeCCceEEEEEEEEEEee
Q psy15127        143 ENLVGSISLRASLTVHLL  160 (633)
Q Consensus       143 ~n~~g~~s~~~~l~V~~~  160 (633)
                      .|..|..+..+.|.|..+
T Consensus        93 ~N~~G~~~~~~~l~V~~~  110 (116)
T 2kkq_A           93 VNEAGVTTCNTRLDVTAR  110 (116)
T ss_dssp             EETTEEEEEEEEEEEECC
T ss_pred             EcCCCeEEEEEEEEEeCC
Confidence            999999999999999987

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.53  E-value=4.5e-14  Score=130.87  Aligned_cols=111  Identities=12%  Similarity=0.082  Sum_probs=86.5

Q ss_pred             eEEEcCCCC--CCeEEEEEEe--------------c---CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC
Q psy15127         49 VLGARGALS--DDQWKLIAKE--------------A---LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD  109 (633)
Q Consensus        49 ~L~i~~v~~--~G~Y~C~a~~--------------v---~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~  109 (633)
                      .|.|.+++.  +|.|+|.|.|              +   ..+|.+...| ...+.+|++++|.|.+.+.+.+.+.|+|+|
T Consensus        65 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g  143 (218)
T 1uct_A           65 EFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEG  143 (218)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETT
T ss_pred             EEEEcccccccCEEEEEEEEcCCCceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECC
Confidence            899999998  9999999988              1   1356666555 557899999999997777778899999999


Q ss_pred             ccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCc-----eEEEEEEEEEEee
Q psy15127        110 GKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVG-----SISLRASLTVHLL  160 (633)
Q Consensus       110 ~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g-----~~s~~~~l~V~~~  160 (633)
                      ..+..........+.|.|.+++.+|+|.|+|.|.|...     ..+..+.|.|...
T Consensus       144 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~  199 (218)
T 1uct_A          144 ELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDS  199 (218)
T ss_dssp             CSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC--
T ss_pred             CcccccccCCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecC
Confidence            98765332233467899999999999999999997531     2456677777765

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.53  E-value=8e-14  Score=112.21  Aligned_cols=92  Identities=20%  Similarity=0.217  Sum_probs=80.0

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEcc---cceEEEccCCCCCCeEEEEEEEe
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILD---DRSLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                      ..+|.|...+.+..+.+|+.+.|.|.+.+.|.|.++|+|++..+... +.....   ...|.|.+++.+|+|.|+|.|.|
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   85 (103)
T 3qp3_A            6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTN   85 (103)
T ss_dssp             CEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEe
Confidence            45788999999999999999999999999999999999999988654 333322   24799999999999999999999


Q ss_pred             CCceEEEEEEEEEEee
Q psy15127        145 LVGSISLRASLTVHLL  160 (633)
Q Consensus       145 ~~g~~s~~~~l~V~~~  160 (633)
                      ..|..+..+.|.|...
T Consensus        86 ~~G~~~~~~~l~V~~~  101 (103)
T 3qp3_A           86 YKGEASDYATLDVTGG  101 (103)
T ss_dssp             TTEEEEEEEEEEEECC
T ss_pred             CCCcEEEEEEEEEECC
Confidence            9999999999998764

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.53  E-value=5.9e-14  Score=112.30  Aligned_cols=92  Identities=23%  Similarity=0.385  Sum_probs=79.0

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCC---eEEccc--ceEEEccCCCCCCeEEEEEEE
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR---AKILDD--RSLQIENVGPQDEGLYICDVE  143 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~---~~~~~~--~~L~i~~v~~~d~G~Y~C~~~  143 (633)
                      ..+|.|...|..+.+.+|+.++|.|.+.|.|.|.+.|+|++..+....   .....+  ..|.|.+++.+|+|.|+|.|.
T Consensus         3 ~~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   82 (100)
T 2kdg_A            3 MGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAK   82 (100)
T ss_dssp             CEEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEE
Confidence            467888888999999999999999999999999999999998876542   222233  389999999999999999999


Q ss_pred             eCCceEEEEEEEEEEee
Q psy15127        144 NLVGSISLRASLTVHLL  160 (633)
Q Consensus       144 n~~g~~s~~~~l~V~~~  160 (633)
                      |..|..+..+.|.|...
T Consensus        83 n~~g~~~~~~~l~V~~~   99 (100)
T 2kdg_A           83 NRAGEATFTVQLDVLAK   99 (100)
T ss_dssp             ETTEEEEEEEEEEEECC
T ss_pred             cCCCeEEEEEEEEEEec
Confidence            99999999999988764

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.52  E-value=4.8e-14  Score=111.51  Aligned_cols=87  Identities=23%  Similarity=0.344  Sum_probs=76.7

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceE
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSI  149 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~  149 (633)
                      .+|.+...+....+.+|+.+.|.|.+.+.| |.+.|+|++..+..+.+....++.|.|.+++.+|+|.|+|.|.|..|..
T Consensus         8 ~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~   86 (95)
T 2ckn_A            8 QPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGSD   86 (95)
T ss_dssp             CSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEECSSEEEESSCCGGGSEEEEEEEEETTEEE
T ss_pred             CCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEeCCEEEECCCChHHCEEEEEEeccCCCcE
Confidence            467788888899999999999999999987 7999999999887655555567899999999999999999999999998


Q ss_pred             EEEEEEEE
Q psy15127        150 SLRASLTV  157 (633)
Q Consensus       150 s~~~~l~V  157 (633)
                      +..+.|.|
T Consensus        87 ~~~~~l~V   94 (95)
T 2ckn_A           87 TTYFSVNV   94 (95)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            88888876

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=4e-14  Score=113.02  Aligned_cols=91  Identities=31%  Similarity=0.504  Sum_probs=78.9

Q ss_pred             cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEE-cccceEEEccCCCCCCeEEEEEEEeCC
Q psy15127         68 ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKI-LDDRSLQIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus        68 v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      +..+|.+...+....+.+|+.+.|.|.+.+.|.|.+.|+|++..+....... .....|.|.+++.+|+|.|+|.|.|..
T Consensus         8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   87 (99)
T 2yr3_A            8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENAL   87 (99)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEETTEEEEEECSCCTTCCBCEEEEEECSS
T ss_pred             cccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEeeCCeEEEEECCCChhhCEEEEEEEEECC
Confidence            4567889999999999999999999999999999999999999887554333 334689999999999999999999999


Q ss_pred             ceEEEEEEEEEE
Q psy15127        147 GSISLRASLTVH  158 (633)
Q Consensus       147 g~~s~~~~l~V~  158 (633)
                      |..+..+.|.|.
T Consensus        88 g~~~~~~~l~V~   99 (99)
T 2yr3_A           88 GQVSCSAWVTVH   99 (99)
T ss_dssp             CEEEEECCEEEC
T ss_pred             CeEEEEEEEEEC
Confidence            998888887763

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.51  E-value=1.3e-13  Score=129.84  Aligned_cols=164  Identities=21%  Similarity=0.270  Sum_probs=106.5

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCc--cC----------------CCCCeEEcc----cceEEEccCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG--KM----------------PTGRAKILD----DRSLQIENVG  131 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~--~i----------------~~~~~~~~~----~~~L~i~~v~  131 (633)
                      ++..|..+.+.+|++++|.|.+. .+.+.+.|+|++.  ..                ..+++....    +..|.|.+++
T Consensus         2 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~   80 (238)
T 1bec_A            2 VTQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELAT   80 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCC
T ss_pred             cccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCC
Confidence            45567888999999999999985 4578999999642  11                023444332    2489999999


Q ss_pred             CCCCeEEEEEEEeCCc-----eEEEEEEEEEEee-----cccccc-CCCceEEecCCcEEEEEeCCCCCCCC-eEEEEEC
Q psy15127        132 PQDEGLYICDVENLVG-----SISLRASLTVHLL-----RDDFRA-EPKDTRVASGETALLECGPPKGQPEP-TLHWKKN  199 (633)
Q Consensus       132 ~~d~G~Y~C~~~n~~g-----~~s~~~~l~V~~~-----~p~~~~-~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~  199 (633)
                      .+|+|.|.|.+.+..+     .....+.|.|...     +|.+.. .+....+.+|+.+.|.|.+....|.+ .+.|+++
T Consensus        81 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~  160 (238)
T 1bec_A           81 PSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN  160 (238)
T ss_dssp             GGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEET
T ss_pred             cccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEEC
Confidence            9999999999998642     1223456777652     243332 33334456799999999954335755 9999999


Q ss_pred             CEEeccCCCe---eEEeccceeeeE---EE--------eeeEEEEeecCCCCC
Q psy15127        200 GQFIDLESSK---SLDLSRRTLGWL---RV--------RPLYWNVARPRANLN  238 (633)
Q Consensus       200 ~~~~~~~~~~---~~~~~~~~~~~~---~~--------~g~y~C~a~~~~~~~  238 (633)
                      |..+......   ........+.+.   .+        .+.|+|.+.|.....
T Consensus       161 g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~  213 (238)
T 1bec_A          161 GKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSE  213 (238)
T ss_dssp             TEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCCCT
T ss_pred             CEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCCCC
Confidence            9988643211   111122222211   11        357999999975443

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.51  E-value=3.4e-14  Score=128.11  Aligned_cols=101  Identities=18%  Similarity=0.193  Sum_probs=80.1

Q ss_pred             eeCceEEEcCCCC--CCeEEEEEEe--------------c---CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEE
Q psy15127         45 IFGSVLGARGALS--DDQWKLIAKE--------------A---LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILW  105 (633)
Q Consensus        45 ~~~~~L~i~~v~~--~G~Y~C~a~~--------------v---~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W  105 (633)
                      ..++.|.|.+++.  +|.|+|.|.|              +   ..+|.+...| ...+.+|+.++|.|.+.+. .+.+.|
T Consensus        49 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~-~~~~~w  126 (184)
T 2gi7_A           49 QDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYG-FDQFAL  126 (184)
T ss_dssp             ESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEEC-CCSSCCTTCEEEEEECSSC-CCEEEE
T ss_pred             CcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeCC-CceecCCCcEEEEEEcCCC-CcEEEE
Confidence            4567899999998  9999999988              1   2345665555 4567899999999998765 469999


Q ss_pred             EeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127        106 RRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVG  147 (633)
Q Consensus       106 ~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g  147 (633)
                      +|+|..+..........+.|.|.+++.+|+|.|+|.|.|..+
T Consensus       127 ~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          127 YKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             EECCCCTTSCCCCEEEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred             EECCCcCcceecCCCceEEEEEccCCccCCeEEEEEEEeCCC
Confidence            999988765333333456899999999999999999999753

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.51  E-value=5.1e-15  Score=138.79  Aligned_cols=135  Identities=12%  Similarity=0.147  Sum_probs=89.7

Q ss_pred             CCee-eeCCCceEEEcCCeEEEEEEEecc-CC-C-eEEEEeCCccC-CCCCeEE--c------ccceEEEccCCCCCCeE
Q psy15127         71 KPFP-ISEPSDATVLSGSVVEFVCRVGGD-PL-P-TILWRRDDGKM-PTGRAKI--L------DDRSLQIENVGPQDEGL  137 (633)
Q Consensus        71 ~p~~-~~~~~~~~~~~G~~~~L~C~~~~~-p~-p-~i~W~~~~~~i-~~~~~~~--~------~~~~L~i~~v~~~d~G~  137 (633)
                      +|.+ +..|....+.+|+.++|.|.+.+. |. | .|+|+++|..+ .......  .      ....|.|.+++.+|+|.
T Consensus        12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~   91 (231)
T 2w59_A           12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGER   91 (231)
T ss_dssp             CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCC
T ss_pred             CCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCE
Confidence            3444 466777777899999999999884 64 4 99999999877 3221111  1      12369999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEE---eecccccc-CCCceEEecCCcEEEEEeCCCCCC-CCeEEEEECCEEeccC
Q psy15127        138 YICDVENLVGSISLRASLTVH---LLRDDFRA-EPKDTRVASGETALLECGPPKGQP-EPTLHWKKNGQFIDLE  206 (633)
Q Consensus       138 Y~C~~~n~~g~~s~~~~l~V~---~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~~p-~~~i~W~~~~~~~~~~  206 (633)
                      |+|.|.+..+.......|.+.   ..+|.+.+ .+.... ..+..+.|.|.+....| .+.|.|++||..+...
T Consensus        92 Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~-~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~  164 (231)
T 2w59_A           92 FTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEE-LSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPAT  164 (231)
T ss_dssp             EEEEEECTTCSSCEEEEECCCCSCCBCCEEEEECCCGGG-GGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGG
T ss_pred             EEEEEEcCCCCCceEEEEecCCCCCcCCEEEEeCCCHHH-hccCceEEEEEEEeccCCCcEEEEEECCEECCCc
Confidence            999999887543222222221   11244332 222222 23567999999544355 4799999999988654

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.51  E-value=1.5e-13  Score=109.76  Aligned_cols=91  Identities=35%  Similarity=0.617  Sum_probs=78.8

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEccc---ceEEEccCCCCCCeEEEEEEEe
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDD---RSLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~~---~~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                      ..+|.|...+....+.+|+.+.|.|.+.+.|.|.+.|+|++..+..+ +.....+   ..|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n   83 (99)
T 3puc_A            4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKN   83 (99)
T ss_dssp             CEEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEe
Confidence            45788999999999999999999999999999999999999988654 3333332   2799999999999999999999


Q ss_pred             CCceEEEEEEEEEEe
Q psy15127        145 LVGSISLRASLTVHL  159 (633)
Q Consensus       145 ~~g~~s~~~~l~V~~  159 (633)
                      ..|..+..+.|.|..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 3puc_A           84 SAGSVSSSCKLTIKA   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCcEeEEEEEEEEe
Confidence            999999998888864

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.51  E-value=4.1e-14  Score=118.19  Aligned_cols=104  Identities=19%  Similarity=0.203  Sum_probs=82.1

Q ss_pred             eccccCCCCCCCCceeecCC------CCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhh
Q psy15127        490 NSHGLGIPSPVSPITRTLGL------NSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEAR  563 (633)
Q Consensus       490 n~~G~g~~s~~~~~~~t~~~------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~  563 (633)
                      +..|.|++|... .++|.+.      +|.+|.++                ++..++ ++|.|+|++|        ...+|
T Consensus         2 t~~G~g~~S~~~-~~~T~~~~~~~~~~P~~P~~l----------------~~~~~~-~sv~l~W~~P--------~~~~g   55 (126)
T 1x5i_A            2 SSGSSGPATDWL-SAETFESDLDETRVPEVPSSL----------------HVRPLV-TSIVVSWTPP--------ENQNI   55 (126)
T ss_dssp             CSCCCCCCCCCC-CSCCCCTTSBCSSCCCSCSEE----------------EEEEET-TEEEEEEECC--------SCTTB
T ss_pred             CCCccCCCCCCE-EeECccccCccCCCCCCCCee----------------EEEecC-CEEEEEEcCC--------CCCCC
Confidence            568999999877 4777776      77766666                777776 9999999965        45688


Q ss_pred             hhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        564 ARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       564 ~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      .|++| .|+|+. +...       |     ..+......++++|.+|+|++.|.|+|+|.|.+|.|++|.
T Consensus        56 ~i~~Y-~v~y~~-~~~~-------~-----~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~  111 (126)
T 1x5i_A           56 VVRGY-AIGYGI-GSPH-------A-----QTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLY  111 (126)
T ss_dssp             CCCEE-EEEECS-SCGG-------G-----EEEECCTTCCEEEECSCCSSCEECCEEEEECSSCBCCCCC
T ss_pred             CEeEE-EEEEEc-CCCC-------c-----eEEEeCCCeeEEEEeCCCCCCEEEEEEEEEeCCccCccee
Confidence            99999 999983 2211       1     1223456789999999999999999999999999999874

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.51  E-value=2.1e-14  Score=132.19  Aligned_cols=166  Identities=14%  Similarity=0.112  Sum_probs=98.5

Q ss_pred             CeeeeCCCceEE--EcCCeEEEEEEEeccC----CCeEEEEeCCccCCCCC---eEEcccceEEEc------cCCCCCCe
Q psy15127         72 PFPISEPSDATV--LSGSVVEFVCRVGGDP----LPTILWRRDDGKMPTGR---AKILDDRSLQIE------NVGPQDEG  136 (633)
Q Consensus        72 p~~~~~~~~~~~--~~G~~~~L~C~~~~~p----~p~i~W~~~~~~i~~~~---~~~~~~~~L~i~------~v~~~d~G  136 (633)
                      |.+...|+...+  .+|++++|.|.+.+.+    .+.|+|+|++..+....   .....++.|.+.      ....+|+|
T Consensus         2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g   81 (207)
T 1l6x_A            2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGK   81 (207)
T ss_dssp             CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTC
T ss_pred             CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCc
Confidence            455455555444  7999999999998865    24899999998765431   122234444443      33344599


Q ss_pred             EEEEEEEeCCceEEEEEEE----EEEeeccccccCCCceEEecCCcEEEEEeCCCCCCC-CeEEEEECCEEeccCCCe-e
Q psy15127        137 LYICDVENLVGSISLRASL----TVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPE-PTLHWKKNGQFIDLESSK-S  210 (633)
Q Consensus       137 ~Y~C~~~n~~g~~s~~~~l----~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~i~W~~~~~~~~~~~~~-~  210 (633)
                      .|+|.|.|..+.......+    .+..+ |.+.+.+.......|..+.|.|.+....|. +.|.|+++|..+...... .
T Consensus        82 ~Y~C~a~n~~~~~~~~~~v~~~~~~~~~-P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~  160 (207)
T 1l6x_A           82 EYKCKVSNKALPAPIEKTISKAKGQPRE-PQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPP  160 (207)
T ss_dssp             CEEEEEECTTSSSCEEEEECCCCSCCBC-CEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCC
T ss_pred             eEEEEEEcCcCCcceEEEeccCCCCCcC-CEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCc
Confidence            9999999987754222233    22333 444333322222346679999995433565 499999999987532111 1


Q ss_pred             EEeccceeeeE---EE-------eeeEEEEeecCCCCC
Q psy15127        211 LDLSRRTLGWL---RV-------RPLYWNVARPRANLN  238 (633)
Q Consensus       211 ~~~~~~~~~~~---~~-------~g~y~C~a~~~~~~~  238 (633)
                      ....++.+.+.   .+       .|.|+|.|.|.....
T Consensus       161 ~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~~  198 (207)
T 1l6x_A          161 VLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHN  198 (207)
T ss_dssp             EECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred             eECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCcCC
Confidence            11222222221   11       479999999986543

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.51  E-value=1.7e-14  Score=137.43  Aligned_cols=132  Identities=18%  Similarity=0.250  Sum_probs=88.7

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC------C----------CC-CeEEcccce--EEEccCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM------P----------TG-RAKILDDRS--LQIENVGP  132 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i------~----------~~-~~~~~~~~~--L~i~~v~~  132 (633)
                      +...|..+.+.+|++++|.|.+.+.+.+.+.|+|..  ...      .          .+ ++....+..  |.|.+++.
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~   83 (253)
T 3to4_D            4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANM   83 (253)
T ss_dssp             CEEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESC
T ss_pred             EEeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCCh
Confidence            345577888999999999999888888899999832  110      0          01 333322222  99999999


Q ss_pred             CCCeEEEEEEEeCCc------eEEEEEEEEEEee-----cccccc-CCCceEEecCCcEEEEEeCCCCCCCC-eEEEEEC
Q psy15127        133 QDEGLYICDVENLVG------SISLRASLTVHLL-----RDDFRA-EPKDTRVASGETALLECGPPKGQPEP-TLHWKKN  199 (633)
Q Consensus       133 ~d~G~Y~C~~~n~~g------~~s~~~~l~V~~~-----~p~~~~-~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~  199 (633)
                      +|+|.|.|.+.+..+      .......|.|...     +|.+.+ .+....+..|+.++|.|.+....|.+ .+.|+++
T Consensus        84 ~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~  163 (253)
T 3to4_D           84 SQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN  163 (253)
T ss_dssp             SSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             hhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEEC
Confidence            999999999986543      2233456777642     132222 12222233578999999954447777 9999999


Q ss_pred             CEEecc
Q psy15127        200 GQFIDL  205 (633)
Q Consensus       200 ~~~~~~  205 (633)
                      |..+..
T Consensus       164 g~~l~~  169 (253)
T 3to4_D          164 GKEVHS  169 (253)
T ss_dssp             TEEECT
T ss_pred             CEECCC
Confidence            987753

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.50  E-value=5e-14  Score=128.49  Aligned_cols=110  Identities=17%  Similarity=0.207  Sum_probs=83.2

Q ss_pred             CceEEEcCCCC--CCeEEEEEEe--------------c---CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEe
Q psy15127         47 GSVLGARGALS--DDQWKLIAKE--------------A---LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRR  107 (633)
Q Consensus        47 ~~~L~i~~v~~--~G~Y~C~a~~--------------v---~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~  107 (633)
                      +++|.|.+++.  +|.|+|.|.|              +   ..+|.+...+.. .+.+|+.++|.|.+.+. .+.+.|+|
T Consensus        57 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~~-~~~~~w~k  134 (196)
T 3p2t_A           57 KARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSP-LVTSGKSVTLLCQSRSP-MDTFLLCK  134 (196)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEESCS-EECTTCCEEEEEEEEEE-EEEEEEEE
T ss_pred             eEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeCCcc-eecCCCeEEEEEecCCC-CCEEEEEe
Confidence            47899999998  9999999988              1   124555555543 68899999999999874 56899999


Q ss_pred             CCccCCCCCeE-----EcccceEEEccCCCCCCeEEEEEEEeCCc-----eEEEEEEEEEE
Q psy15127        108 DDGKMPTGRAK-----ILDDRSLQIENVGPQDEGLYICDVENLVG-----SISLRASLTVH  158 (633)
Q Consensus       108 ~~~~i~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g-----~~s~~~~l~V~  158 (633)
                      +|..+......     ....+.|.|.+++.+|+|.|+|.|.|..+     ..+..+.|.|.
T Consensus       135 ~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  195 (196)
T 3p2t_A          135 ERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVS  195 (196)
T ss_dssp             TTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEEC
T ss_pred             CCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEeC
Confidence            99877543221     12356899999999999999999999875     23445555553

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.50  E-value=1.6e-13  Score=109.44  Aligned_cols=90  Identities=27%  Similarity=0.356  Sum_probs=77.4

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-C-eEEcccc---eEEEccCCCCCCeEEEEEEEe
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-R-AKILDDR---SLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~-~~~~~~~---~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                      .+|.|...|....+.+|+.++|.|.+.+.|.|.+.|+|++..+... + .....++   .|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   83 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEE
Confidence            5788989999999999999999999999999999999999988654 2 2222222   699999999999999999999


Q ss_pred             CCceEEEEEEEEEEe
Q psy15127        145 LVGSISLRASLTVHL  159 (633)
Q Consensus       145 ~~g~~s~~~~l~V~~  159 (633)
                      ..|..+..+.|.|..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           84 EYGARQCEARLEVRG   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCceeEEEEEEEEC
Confidence            999998888888864

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.50  E-value=3e-14  Score=134.34  Aligned_cols=126  Identities=21%  Similarity=0.261  Sum_probs=81.6

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccC----CCeEEEEeCCc--cC------C-----------------CCCeEEcc-----
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDP----LPTILWRRDDG--KM------P-----------------TGRAKILD-----  121 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p----~p~i~W~~~~~--~i------~-----------------~~~~~~~~-----  121 (633)
                      .+|..+.+.+|++++|.|.+.+.+    ...+.|+|...  ..      .                 .+++....     
T Consensus         5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   84 (239)
T 3tv3_H            5 QESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKN   84 (239)
T ss_dssp             EEESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGT
T ss_pred             ecCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCC
Confidence            446678899999999999998755    34899998431  10      0                 12332221     


Q ss_pred             cceEEEccCCCCCCeEEEEEEEeCCc-------------eEEEEEEEEEEe---eccccccCCCceEEecCCcEEEEEeC
Q psy15127        122 DRSLQIENVGPQDEGLYICDVENLVG-------------SISLRASLTVHL---LRDDFRAEPKDTRVASGETALLECGP  185 (633)
Q Consensus       122 ~~~L~i~~v~~~d~G~Y~C~~~n~~g-------------~~s~~~~l~V~~---~~p~~~~~~~~~~~~~g~~~~l~C~~  185 (633)
                      ...|.|.+++.+|+|.|.|.+.+..+             .......|.|..   .+|.+...+....+..|+.+.|.|.+
T Consensus        85 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~  164 (239)
T 3tv3_H           85 LVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLV  164 (239)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEE
T ss_pred             EEEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEE
Confidence            13599999999999999999986521             122334566652   12444433333445679999999996


Q ss_pred             CCCCCCC-eEEEEECCE
Q psy15127        186 PKGQPEP-TLHWKKNGQ  201 (633)
Q Consensus       186 ~~~~p~~-~i~W~~~~~  201 (633)
                      ....|.+ .+.|++++.
T Consensus       165 ~~~~p~~~~v~W~~~g~  181 (239)
T 3tv3_H          165 KDYFPEPVTVSWNSGAL  181 (239)
T ss_dssp             EEEBSSCCEEEEGGGTB
T ss_pred             eeEeCCCeEEEEEECCc
Confidence            4446644 688998875

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.50  E-value=3.6e-12  Score=115.57  Aligned_cols=235  Identities=18%  Similarity=0.225  Sum_probs=152.0

Q ss_pred             eeeeCCCceEEEcCCeEEEEEEEec-cC---CCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         73 FPISEPSDATVLSGSVVEFVCRVGG-DP---LPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        73 ~~~~~~~~~~~~~G~~~~L~C~~~~-~p---~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      .+...|....+..|+.++|.|.+.+ .|   .-.++|+|||..+...      ...|.|..+...|+|.|+|.+.+..|.
T Consensus         4 tVs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGa------T~tLti~s~t~sdSG~YqCvVTDa~Gc   77 (304)
T 3shs_A            4 TVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN------TATLTVADATSENAGSYKVTVQDTDTM   77 (304)
T ss_dssp             EEEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCC------SSEEEESSCCGGGCEEEEEEEEETTTC
T ss_pred             EEEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCC------cceEEeeeccccCCeEEEEEEEECCCC
Confidence            4455677777899999999999864 45   3379999999887542      248999999999999999999998777


Q ss_pred             EEEEEEEEEEeec-ccc-ccCCCceEEecCCcEEEEEeC--CCCCC-----CCeEEEEECCEEeccCCCeeEEeccceee
Q psy15127        149 ISLRASLTVHLLR-DDF-RAEPKDTRVASGETALLECGP--PKGQP-----EPTLHWKKNGQFIDLESSKSLDLSRRTLG  219 (633)
Q Consensus       149 ~s~~~~l~V~~~~-p~~-~~~~~~~~~~~g~~~~l~C~~--~~~~p-----~~~i~W~~~~~~~~~~~~~~~~~~~~~~~  219 (633)
                      ......+.|.... +.+ ...|....+..|..+.|.+.+  ..|.|     ..+|+|++++..+....  .+......  
T Consensus        78 s~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~IsgAq--~lT~sS~T--  153 (304)
T 3shs_A           78 TSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ--DITIQEFT--  153 (304)
T ss_dssp             CEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEESSS--EEEECSCC--
T ss_pred             eeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccCcc--ccceeeEE--
Confidence            5444455555431 122 223555566678899999885  55665     46999999998775332  11111111  


Q ss_pred             eEEEeeeEEEEeecCCCCCCc-----ccc------cccceeEEecCCceEEEEEEEee------ecCC----eeEEEE--
Q psy15127        220 WLRVRPLYWNVARPRANLNPR-----YIG------RKMASLLIWNHPRVNRLSCFAEG------SPLP----SVFWTQ--  276 (633)
Q Consensus       220 ~~~~~g~y~C~a~~~~~~~p~-----~~~------~~~~~~~~~~~g~~~~l~C~~~g------~p~~----~v~W~~--  276 (633)
                       ....|.|.|.+.+..+-...     +..      ...........|+.+.|...+..      ...|    .+.|+.  
T Consensus       154 -ateaG~YtV~VTn~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (304)
T 3shs_A          154 -ADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQR  232 (304)
T ss_dssp             -GGGCEEEEEEEESSSGGGCEEEEEEEEECEEEEEECCCSEEEEETTSCEEECCEEEEECCSCCTTCCEEEEEEEEEEEC
T ss_pred             -ecCCeEEEEEEEcCCCCcccccceEEEEEccccchhheEeehhhcCcEEEEEEEEeeccccCCCCCCceEEEEEEEEee
Confidence             11258999999987652111     000      11111223446777777766532      1223    346764  


Q ss_pred             CCEE----EEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEE
Q psy15127        277 EGSQ----VLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  318 (633)
Q Consensus       277 ~g~~----~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  318 (633)
                      .|+.    +....+.....+.+.++++|.-.....+|...|-|.+.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (304)
T 3shs_A          233 EGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAK  278 (304)
T ss_dssp             TTCCSCEEEESSSEECGGGEEECTTSCEEESSCCGGGCEEEEEEEE
T ss_pred             cCccCchhhhhhhhhhhccceeCCCcceeecccccccchheeeHHH
Confidence            3431    11112233456677888999999999999999999884

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.49  E-value=1.5e-13  Score=119.54  Aligned_cols=109  Identities=29%  Similarity=0.487  Sum_probs=83.8

Q ss_pred             CCeEEEEEEe-cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcc-----cceEEEccCC
Q psy15127         58 DDQWKLIAKE-ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD-----DRSLQIENVG  131 (633)
Q Consensus        58 ~G~Y~C~a~~-v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~-----~~~L~i~~v~  131 (633)
                      .+.+.+.+.. +..+|.|...+..+.+.+|+.++|.|.+.|.|.|.|+|+|++..+.........     ...|.|.+++
T Consensus        27 ~~~~~~~~~~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~  106 (154)
T 1fhg_A           27 DAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVC  106 (154)
T ss_dssp             -------CCCCCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCC
T ss_pred             cceeeehhcccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCC
Confidence            4444444433 678899999999999999999999999999999999999999988765333221     2489999999


Q ss_pred             CCCCeEEEEEEEeCCceEEEEEEEEEEeeccccccC
Q psy15127        132 PQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAE  167 (633)
Q Consensus       132 ~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~  167 (633)
                      ..|+|.|+|.|.|..|..+..+.|.|..+ |.....
T Consensus       107 ~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~-p~~~~~  141 (154)
T 1fhg_A          107 GDDDAKYTCKAVNSLGEATCTAELLVETM-GKEGEG  141 (154)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEECC-------
T ss_pred             hhcCEEEEEEEEECCCeEEEEEEEEEeCc-CcCCCC
Confidence            99999999999999999999999999987 554433

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.49  E-value=4.5e-14  Score=132.59  Aligned_cols=126  Identities=22%  Similarity=0.292  Sum_probs=77.7

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccC--CCeE--EEEeCCc--c---C-----------------CCCCeEEccc-----ce
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDP--LPTI--LWRRDDG--K---M-----------------PTGRAKILDD-----RS  124 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p--~p~i--~W~~~~~--~---i-----------------~~~~~~~~~~-----~~  124 (633)
                      .+|+.+.+.+|++++|.|.+.+.+  ...+  .|+|...  .   +                 ..+|+....+     ..
T Consensus         5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   84 (232)
T 3qhz_H            5 RESGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVV   84 (232)
T ss_dssp             EEECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEE
T ss_pred             EcCCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEE
Confidence            445567899999999999997532  2344  9998421  1   0                 0123333322     36


Q ss_pred             EEEccCCCCCCeEEEEEEEeCC--------ceEEEEEEEEEEe---eccccccCCCceEEecCCcEEEEEeCCCCCC-CC
Q psy15127        125 LQIENVGPQDEGLYICDVENLV--------GSISLRASLTVHL---LRDDFRAEPKDTRVASGETALLECGPPKGQP-EP  192 (633)
Q Consensus       125 L~i~~v~~~d~G~Y~C~~~n~~--------g~~s~~~~l~V~~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~  192 (633)
                      |.|.+++.+|+|.|.|.+.+..        ........|.|..   .+|.+...+....+..|+.++|.|.+....| ..
T Consensus        85 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~  164 (232)
T 3qhz_H           85 LTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV  164 (232)
T ss_dssp             EEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCC
T ss_pred             EEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCe
Confidence            9999999999999999998652        2233445667752   1244443333345567999999999544455 34


Q ss_pred             eEEEEECCE
Q psy15127        193 TLHWKKNGQ  201 (633)
Q Consensus       193 ~i~W~~~~~  201 (633)
                      .+.|++++.
T Consensus       165 ~v~W~~~g~  173 (232)
T 3qhz_H          165 TVSWNSGAL  173 (232)
T ss_dssp             EEEEGGGTB
T ss_pred             EEEEEECCE
Confidence            788998874

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.48  E-value=6.3e-14  Score=126.79  Aligned_cols=111  Identities=19%  Similarity=0.147  Sum_probs=83.8

Q ss_pred             eCceEEEcCCCC--CCeEEEEEEe--------------c---CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEE
Q psy15127         46 FGSVLGARGALS--DDQWKLIAKE--------------A---LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWR  106 (633)
Q Consensus        46 ~~~~L~i~~v~~--~G~Y~C~a~~--------------v---~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~  106 (633)
                      .++.|.|.+++.  +|.|+|.+.+              +   ..+|.+...| ...+.+|+.++|.|.+.+ +.+.+.|+
T Consensus        55 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~  132 (188)
T 1oll_A           55 NKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDT-ATSMFLLL  132 (188)
T ss_dssp             CEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEESCSCCCEEEEES-CSEEETTCEEEEEEECSS-SCSEEEEE
T ss_pred             ceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEEecccCCCCeEEECC-CCccccCCEEEEEEEcCC-CCCEEEEE
Confidence            346799999998  9999999976              1   1256666555 456899999999999865 45789999


Q ss_pred             eCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCc---eEEEEEEEEEE
Q psy15127        107 RDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVG---SISLRASLTVH  158 (633)
Q Consensus       107 ~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g---~~s~~~~l~V~  158 (633)
                      |+|..+..........+.|.|.+++.+|+|.|+|.|.|...   ..+..+.|.|.
T Consensus       133 k~g~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          133 KEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             EESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             ECCccccccccCCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence            99987754222223457899999999999999999988642   23556666664

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.48  E-value=6.2e-14  Score=131.28  Aligned_cols=130  Identities=17%  Similarity=0.169  Sum_probs=87.1

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEecc--CCCeEEEEeCC--ccC-----------------CCCCeEEcc-----cceEEE
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGD--PLPTILWRRDD--GKM-----------------PTGRAKILD-----DRSLQI  127 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~--p~p~i~W~~~~--~~i-----------------~~~~~~~~~-----~~~L~i  127 (633)
                      +...|..+.+.+|++++|.|.+.+.  +.+.+.|+|+.  ..+                 ..+++....     +..|.|
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (230)
T 1ypz_F            4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI   83 (230)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred             ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence            4556788899999999999999764  56789999853  211                 123333332     237999


Q ss_pred             ccCCCCCCeEEEEEEEeC--Cc--eEEEEEEEEEEee--------ccccc-cCCCceEEecCCcEEEEEeCCCCCCC-Ce
Q psy15127        128 ENVGPQDEGLYICDVENL--VG--SISLRASLTVHLL--------RDDFR-AEPKDTRVASGETALLECGPPKGQPE-PT  193 (633)
Q Consensus       128 ~~v~~~d~G~Y~C~~~n~--~g--~~s~~~~l~V~~~--------~p~~~-~~~~~~~~~~g~~~~l~C~~~~~~p~-~~  193 (633)
                      .+++.+|+|.|.|.+.+.  ..  .....+.|.|...        +|... ..|....+..|+.++|.|.+....|. +.
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~  163 (230)
T 1ypz_F           84 YSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIR  163 (230)
T ss_dssp             CSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCE
T ss_pred             CcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeE
Confidence            999999999999999874  11  1223457777621        12221 12333345568999999996544575 59


Q ss_pred             EEEEE-CCEEe
Q psy15127        194 LHWKK-NGQFI  203 (633)
Q Consensus       194 i~W~~-~~~~~  203 (633)
                      +.|++ +|..+
T Consensus       164 v~W~~~~g~~l  174 (230)
T 1ypz_F          164 VYWKEKDGNTI  174 (230)
T ss_dssp             EEEECTTSSCB
T ss_pred             EEEEccCCeEc
Confidence            99998 76544

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.48  E-value=1.3e-14  Score=136.01  Aligned_cols=178  Identities=15%  Similarity=0.073  Sum_probs=100.0

Q ss_pred             CeEEEEEEe---------cCcCCee-eeCCCceE-EEcCCeEEEEEEEeccC----CCeEEEEeCCccCCCCCe------
Q psy15127         59 DQWKLIAKE---------ALIKPFP-ISEPSDAT-VLSGSVVEFVCRVGGDP----LPTILWRRDDGKMPTGRA------  117 (633)
Q Consensus        59 G~Y~C~a~~---------v~~~p~~-~~~~~~~~-~~~G~~~~L~C~~~~~p----~p~i~W~~~~~~i~~~~~------  117 (633)
                      |.|.|...+         +..+|.+ +..|.... +..|+.++|.|.+.|..    ...|+|+|+|..+.....      
T Consensus         1 ~~~~~~~~~~~~~c~~~~~~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~   80 (240)
T 4acp_A            1 GTKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQ   80 (240)
T ss_dssp             ----------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC
T ss_pred             CceeeeeeecCCCCCccccCCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceEC
Confidence            678888777         3334544 45555554 55799999999999863    337999999988743211      


Q ss_pred             ---EEcccceEEEccCCCCCCeEEEEEEEeCCce--EEEEEEE--EEEeeccccccCCCceEEecCCcEEEEEeCCCCCC
Q psy15127        118 ---KILDDRSLQIENVGPQDEGLYICDVENLVGS--ISLRASL--TVHLLRDDFRAEPKDTRVASGETALLECGPPKGQP  190 (633)
Q Consensus       118 ---~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~--~s~~~~l--~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p  190 (633)
                         .+...+.|.|.....+|.|.|+|.|.+..+.  ..+.+.+  .+..+ |.+.+.+.......|+.+.|.|.+...+|
T Consensus        81 ~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~-P~V~v~~~~~~~~~g~~~~L~C~~~gf~P  159 (240)
T 4acp_A           81 YNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPRE-PQVYTLPPSRDELTKNQVSLTCLVKGFYP  159 (240)
T ss_dssp             ---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBC-CEEEEECCCGGGGGSSEEEEEEEEEEEBS
T ss_pred             CCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCC-CEEEEECCChHHhcCCceEEEEEEeEEeC
Confidence               1111246888877788899999999988764  2333332  12233 55544443333345899999999544467


Q ss_pred             CC-eEEEEECCEEeccCCCee-EEeccceeeeE---EE-------eeeEEEEeecCCCC
Q psy15127        191 EP-TLHWKKNGQFIDLESSKS-LDLSRRTLGWL---RV-------RPLYWNVARPRANL  237 (633)
Q Consensus       191 ~~-~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~---~~-------~g~y~C~a~~~~~~  237 (633)
                      .+ .+.|+++|..+....... ....+..+...   .+       .+.|+|.+.+..-.
T Consensus       160 ~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l~  218 (240)
T 4acp_A          160 SDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  218 (240)
T ss_dssp             SCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             CCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCCC
Confidence            64 899999999864221111 11112222211   11       26899999887653

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=1.3e-13  Score=114.08  Aligned_cols=103  Identities=14%  Similarity=0.070  Sum_probs=80.9

Q ss_pred             ccCCCCCCCCceeecCCCCCCCc-chHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEE
Q psy15127        493 GLGIPSPVSPITRTLGLNSLVPQ-HLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVV  571 (633)
Q Consensus       493 G~g~~s~~~~~~~t~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i  571 (633)
                      |.|++|... .+.|.+..|..+| ++                ++..++.++|.|+|++|        ..  +.|++| .|
T Consensus         1 G~g~~S~~~-~~~T~~~~P~~~P~~l----------------~~~~~~~~sv~l~W~~p--------~~--g~i~~Y-~v   52 (119)
T 2ee2_A            1 GSSGSSGVA-VINSAQDAPSEAPTEV----------------GVKVLSSSEISVHWEHV--------LE--KIVESY-QI   52 (119)
T ss_dssp             CCCCCSSCC-CCCCCSCCCCCCCCSC----------------EEEEEETTEEEEECCCC--------SC--TTCCEE-EE
T ss_pred             CCCCCCCCE-EEECCCcCCCCCCCcE----------------EEEEccCCEEEEEecCC--------CC--CccceE-EE
Confidence            678888766 5778888777666 55                78889999999999965        22  889999 99


Q ss_pred             EEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        572 NLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       572 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +|+..+....     .|     ..+...+..++++|.+|++++.|.|+|+|.|.+|.|++|+
T Consensus        53 ~~~~~~~~~~-----~~-----~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  104 (119)
T 2ee2_A           53 RYWAAHDKEE-----AA-----NRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSD  104 (119)
T ss_dssp             EEEESSSCGG-----GC-----EEEEEETTCSEEEECSCCTTCEEEEEEEEECSSSCCCCCC
T ss_pred             EEEECCCccc-----Cc-----EEEEcCCCEeEEEECCCCCCCEEEEEEEEEcCCccCCCCC
Confidence            9988764331     11     1223345678999999999999999999999999999985

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.48  E-value=6e-14  Score=126.59  Aligned_cols=97  Identities=12%  Similarity=0.116  Sum_probs=73.0

Q ss_pred             CceEEEcC-CCC--CCeEEEEEEec--------------CcCCee----------------e----eCCCc---eEEEcC
Q psy15127         47 GSVLGARG-ALS--DDQWKLIAKEA--------------LIKPFP----------------I----SEPSD---ATVLSG   86 (633)
Q Consensus        47 ~~~L~i~~-v~~--~G~Y~C~a~~v--------------~~~p~~----------------~----~~~~~---~~~~~G   86 (633)
                      +++|.|.+ ++.  +|.|+|.|.|.              ..+|..                .    .....   ..+.+|
T Consensus        43 ~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  122 (186)
T 1jbj_A           43 DKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGD  122 (186)
T ss_dssp             CSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSS
T ss_pred             CCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEecccccccccccccccccCCccccccccccccccccceecCCC
Confidence            46899999 887  99999999881              011110                0    00001   123499


Q ss_pred             CeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceE
Q psy15127         87 SVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSI  149 (633)
Q Consensus        87 ~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~  149 (633)
                      +++.|.|.+   |.|.|+|+|+|..+.....   ..+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus       123 ~~v~l~C~~---p~p~i~W~k~g~~i~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          123 GSVLLTCGL---TDKTIKWLKDGSIISPLNA---TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CEEEEECSS---SCSCEEEEETTEECCCSSC---CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             CeEEEEeeC---CCCeEEEEECCEECcccCC---CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            999999987   7889999999998864322   45789999999999999999999988764

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.48  E-value=9.7e-14  Score=127.00  Aligned_cols=113  Identities=14%  Similarity=0.085  Sum_probs=83.1

Q ss_pred             CceEEEcCCCC--CCeEEEEEEe------------cCcCCee-eeCCCceEEEcCCeEEEEEEEecc-CC--CeEEEEeC
Q psy15127         47 GSVLGARGALS--DDQWKLIAKE------------ALIKPFP-ISEPSDATVLSGSVVEFVCRVGGD-PL--PTILWRRD  108 (633)
Q Consensus        47 ~~~L~i~~v~~--~G~Y~C~a~~------------v~~~p~~-~~~~~~~~~~~G~~~~L~C~~~~~-p~--p~i~W~~~  108 (633)
                      ++.|.|.+++.  +|.|+|.|.|            |..+|.. ...+. ..+.+|+.++|.|.+.+. |.  +.|+|+|+
T Consensus        53 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~  131 (202)
T 1vca_A           53 TSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKG  131 (202)
T ss_dssp             EEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEET
T ss_pred             ccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeC
Confidence            35799999998  9999999998            3334432 22222 568999999999999875 43  37999999


Q ss_pred             CccCCCCCeE--------EcccceEEEccCCCCCCeEEEEEEEeCCce-------EEEEEEEEEEee
Q psy15127        109 DGKMPTGRAK--------ILDDRSLQIENVGPQDEGLYICDVENLVGS-------ISLRASLTVHLL  160 (633)
Q Consensus       109 ~~~i~~~~~~--------~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-------~s~~~~l~V~~~  160 (633)
                      +..+......        ......|.|..+..+|.|.|+|.|.|..+.       .+..+.|.|..+
T Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~  198 (202)
T 1vca_A          132 DHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYIS  198 (202)
T ss_dssp             TEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECC
T ss_pred             CeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecC
Confidence            9876422110        111245788888889999999999998765       466788888877

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.48  E-value=7e-14  Score=132.32  Aligned_cols=127  Identities=23%  Similarity=0.307  Sum_probs=80.8

Q ss_pred             eeCCCceEEEcCCeEEEEEEEec--cCCCeEEEEeCCc--c---C---------------CCCCeEEccc-----ceEEE
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGG--DPLPTILWRRDDG--K---M---------------PTGRAKILDD-----RSLQI  127 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~--~p~p~i~W~~~~~--~---i---------------~~~~~~~~~~-----~~L~i  127 (633)
                      +..|..+.+.+|++++|.|.+.+  .+...+.|+|...  .   +               ..+|+....+     .+|+|
T Consensus         3 l~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   82 (248)
T 3u2s_H            3 LVESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQM   82 (248)
T ss_dssp             EEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred             eecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEE
Confidence            34567788999999999999975  2345799998431  1   0               0134443222     35999


Q ss_pred             ccCCCCCCeEEEEEEEeCC----------------------ceEEEEEEEEEEee---ccccccCCCceEEecCCcEEEE
Q psy15127        128 ENVGPQDEGLYICDVENLV----------------------GSISLRASLTVHLL---RDDFRAEPKDTRVASGETALLE  182 (633)
Q Consensus       128 ~~v~~~d~G~Y~C~~~n~~----------------------g~~s~~~~l~V~~~---~p~~~~~~~~~~~~~g~~~~l~  182 (633)
                      .+++.+|+|.|.|.+.+..                      ......+.|.|...   +|.+...+....+..|+.++|.
T Consensus        83 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~  162 (248)
T 3u2s_H           83 NSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALG  162 (248)
T ss_dssp             CSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEE
T ss_pred             CCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEE
Confidence            9999999999999998741                      11223356666621   2334333333345679999999


Q ss_pred             EeCCCCCC-CCeEEEEECCE
Q psy15127        183 CGPPKGQP-EPTLHWKKNGQ  201 (633)
Q Consensus       183 C~~~~~~p-~~~i~W~~~~~  201 (633)
                      |.+....| ...+.|++++.
T Consensus       163 C~~~~~~P~~~~v~W~~~g~  182 (248)
T 3u2s_H          163 CLVKDYFPEPVTVSWNSGAL  182 (248)
T ss_dssp             EEEEEEBSSCCEEEEGGGTB
T ss_pred             EEEeeEECCCeEEEEeECCc
Confidence            99655466 45899998875

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.48  E-value=3.1e-13  Score=120.73  Aligned_cols=138  Identities=12%  Similarity=0.057  Sum_probs=90.2

Q ss_pred             CCCCCCCccccccce-eeEEEEeccc----CCCCCceEEeeCceEEEcCCCC--CCeEEEEEEecCc-----CC---eee
Q psy15127         11 HPMSSPRAEIEPATR-TNRVSISGDP----GFDSRRSRSIFGSVLGARGALS--DDQWKLIAKEALI-----KP---FPI   75 (633)
Q Consensus        11 ~~~~~~~~~i~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~L~i~~v~~--~G~Y~C~a~~v~~-----~p---~~~   75 (633)
                      +++..+...|.|+.. +......-.+    ...+.|+.+..+|+|.|.+++.  +|.|+|.|.|...     ..   .+.
T Consensus        24 ~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~  103 (182)
T 1hnf_A           24 FQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ  103 (182)
T ss_dssp             CCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEE
T ss_pred             ccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEc
Confidence            344456667886551 2221111100    0245788888899999999998  9999999988111     11   111


Q ss_pred             eCC-CceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEE
Q psy15127         76 SEP-SDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRAS  154 (633)
Q Consensus        76 ~~~-~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~  154 (633)
                      ... .......+..++|.|.+.+.|.+.|+|+++|..+ .     .....|.+.. ..+|+|.|+|.|.|..+..+....
T Consensus       104 ~~~~~P~i~~~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~-----~~~~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~  176 (182)
T 1hnf_A          104 ERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHL-K-----LSQRVITHKW-TTSLSAKFKCTAGNKVSKESSVEP  176 (182)
T ss_dssp             CCCCCCEEEEETTTTEEEEECSSCSSCEEEEEESSCEE-E-----EESSCEEEEC-CSCEEEEEEEEEECSSCEEEEEEE
T ss_pred             CcCCCCEEEEccCcEEEEeEccCCCCCEEEEEECCEEC-C-----CCCcEEEEec-ccCCCcEEEEEEEeCCCCcEEcce
Confidence            111 1112223457999999998889999999999877 1     1233455433 578999999999999998766655


Q ss_pred             E
Q psy15127        155 L  155 (633)
Q Consensus       155 l  155 (633)
                      +
T Consensus       177 ~  177 (182)
T 1hnf_A          177 V  177 (182)
T ss_dssp             E
T ss_pred             e
Confidence            5

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.48  E-value=1.8e-13  Score=127.97  Aligned_cols=112  Identities=13%  Similarity=0.192  Sum_probs=80.3

Q ss_pred             ceEEEcCCCC--CCeEEEEEEe----------cCcCCeeeeCCCceEEEcCCeEEEEEEEec-cCCCeEEEEeCCc-cCC
Q psy15127         48 SVLGARGALS--DDQWKLIAKE----------ALIKPFPISEPSDATVLSGSVVEFVCRVGG-DPLPTILWRRDDG-KMP  113 (633)
Q Consensus        48 ~~L~i~~v~~--~G~Y~C~a~~----------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~-~p~p~i~W~~~~~-~i~  113 (633)
                      .+|.|.+++.  +|.|+|.|.|          +..++.+...+....+.+|+.+.|.|.+.+ .|.|.|+|+|++. .+.
T Consensus        83 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~  162 (226)
T 4f80_A           83 AALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIP  162 (226)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCC
T ss_pred             EEEEEeeCchHHCeeEEEEEECCCcEEEEEEEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcC
Confidence            4799999998  9999999999          222333333444567889999999999987 5999999999654 444


Q ss_pred             CCC--eEEcccc---eEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy15127        114 TGR--AKILDDR---SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHL  159 (633)
Q Consensus       114 ~~~--~~~~~~~---~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~  159 (633)
                      ...  .....++   .+.+.+++.+|+|.|+|.|.|..|..++.+.|.|.+
T Consensus       163 ~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~e  213 (226)
T 4f80_A          163 TVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIAD  213 (226)
T ss_dssp             CEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCT
T ss_pred             CCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECC
Confidence            322  2222233   244557889999999999999999998888888865

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.47  E-value=1.5e-13  Score=122.02  Aligned_cols=105  Identities=13%  Similarity=0.127  Sum_probs=81.9

Q ss_pred             ceEEEcCCCC--CCeEEEEEEe----------cCcCCeeeeCCCceEEEcCCeEEEEEEEe-ccCCCeEEEEeCCccCCC
Q psy15127         48 SVLGARGALS--DDQWKLIAKE----------ALIKPFPISEPSDATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKMPT  114 (633)
Q Consensus        48 ~~L~i~~v~~--~G~Y~C~a~~----------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~-~~p~p~i~W~~~~~~i~~  114 (633)
                      +.|.|.+++.  +|.|+|.+.+          +..+|.+.. +....+.+|+.+.|.|.+. +.|.+.+.|+|+|..+..
T Consensus        51 ~~~~~~~~~~~d~G~Y~C~~~~~~~s~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~  129 (170)
T 3ry4_A           51 QPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQ-TPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF  129 (170)
T ss_dssp             SSEEEEECCGGGCEEEEEEETTSBCCCCEEEEEECCSEEEE-CSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE
T ss_pred             cceEEEecccccCeEEEEEEeCCCceEeEEEEEECCceEec-CCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccc
Confidence            4577788887  9999999987          344444444 4456788999999999994 556789999999987632


Q ss_pred             CCeEEcccceEEEccCCCCCCeEEEEEEEeCCce-EEEEEEEEE
Q psy15127        115 GRAKILDDRSLQIENVGPQDEGLYICDVENLVGS-ISLRASLTV  157 (633)
Q Consensus       115 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~s~~~~l~V  157 (633)
                          ...++.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus       130 ----~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          130 ----SHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             ----ESSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ----cCCCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence                223568999999999999999999999887 555666665

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=2.7e-13  Score=112.05  Aligned_cols=93  Identities=16%  Similarity=0.193  Sum_probs=78.1

Q ss_pred             cCcCCeeee---CCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcc---cceEEEccCCCCCCeEEEEE
Q psy15127         68 ALIKPFPIS---EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD---DRSLQIENVGPQDEGLYICD  141 (633)
Q Consensus        68 v~~~p~~~~---~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~  141 (633)
                      +..+|.|..   .+..+.+.+|+.+.|.|.+.|.|.|.+.|+|++..+..++..+..   ...|.|.+++.+|+|.|+|.
T Consensus        18 v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   97 (118)
T 2e7c_A           18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELS   97 (118)
T ss_dssp             CSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCCSSCEEEECSSEEEEEESSCCTTTCEEEEEE
T ss_pred             eccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCCCcEEEEECCCeEEEEECCCChhcCEEEEEE
Confidence            445677754   356788999999999999999999999999999998755444332   24599999999999999999


Q ss_pred             EEeCCceEEEEEEEEEEee
Q psy15127        142 VENLVGSISLRASLTVHLL  160 (633)
Q Consensus       142 ~~n~~g~~s~~~~l~V~~~  160 (633)
                      |.|..|..+..+.|.|...
T Consensus        98 a~N~~G~~~~~~~l~V~~~  116 (118)
T 2e7c_A           98 VQIENMKDTATIRIRVVEK  116 (118)
T ss_dssp             EECSSCEECCEEEEEEECC
T ss_pred             EEeCCCeEEEEEEEEEEcC
Confidence            9999999889999999876

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.47  E-value=2.9e-13  Score=107.71  Aligned_cols=84  Identities=27%  Similarity=0.446  Sum_probs=69.7

Q ss_pred             eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEcc---CceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ---EGTLRIQGVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                      ..+.+.+|+.+.|.|.+.|.|.|.+.|+++|..+...   ...++.+..   ..+|.|.++..+|+|.|+|.|.|..|..
T Consensus        13 ~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~---~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   89 (100)
T 3knb_A           13 SDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQ---EQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSD   89 (100)
T ss_dssp             SEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTT---GGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             CcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeee---ccceeeeecccceEEEEEcCCCccCCEEEEEEEEECCCEE
Confidence            4466788999999999999999999999999987522   223343332   2379999999999999999999999999


Q ss_pred             EEEEEEEEEe
Q psy15127        325 TVRAFLQVRE  334 (633)
Q Consensus       325 ~~~~~l~v~~  334 (633)
                      +.++.|.|+.
T Consensus        90 ~~~~~l~V~~   99 (100)
T 3knb_A           90 SATVNIHIRS   99 (100)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEEE
Confidence            9999998874

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.47  E-value=5.8e-14  Score=128.01  Aligned_cols=99  Identities=11%  Similarity=0.066  Sum_probs=67.2

Q ss_pred             CceEEEcCCCC--CCeEEEEEEe--------------cCc---CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEe
Q psy15127         47 GSVLGARGALS--DDQWKLIAKE--------------ALI---KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRR  107 (633)
Q Consensus        47 ~~~L~i~~v~~--~G~Y~C~a~~--------------v~~---~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~  107 (633)
                      ++.|.|.+++.  +|.|+|.|.|              +..   +|.+...+ ...+.+|+.++|.|.+.+.| +.+.|+|
T Consensus        57 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k  134 (196)
T 2d3v_A           57 KARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTE  134 (196)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC------------CEEEEEESSCC-SEEEEEE
T ss_pred             ccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEc
Confidence            46799999998  9999999977              212   45665444 35788999999999999888 8999999


Q ss_pred             CCccCCCCCeE--Ec----ccceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127        108 DDGKMPTGRAK--IL----DDRSLQIENVGPQDEGLYICDVENLVG  147 (633)
Q Consensus       108 ~~~~i~~~~~~--~~----~~~~L~i~~v~~~d~G~Y~C~~~n~~g  147 (633)
                      +|..+......  ..    ..+.|.|.+++.+|+|.|+|.|.|..+
T Consensus       135 ~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          135 EGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             C---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             cCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence            99877432111  11    126899999999999999999999765

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.47  E-value=7.5e-14  Score=115.66  Aligned_cols=104  Identities=20%  Similarity=0.179  Sum_probs=84.4

Q ss_pred             ccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEE
Q psy15127        493 GLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVN  572 (633)
Q Consensus       493 G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~  572 (633)
                      |.|++|... .++|.+..|.+|.++                ++..++.++|.|+|++|        ...+|.|.+| .|+
T Consensus         1 G~g~~S~~~-~~~T~~~~P~~P~~l----------------~~~~~~~~sv~l~W~~p--------~~~~g~i~~Y-~v~   54 (119)
T 1wfn_A            1 GSSGSSGPQ-LVRTHEDVPGPVGHL----------------SFSEILDTSLKVSWQEP--------GEKNGILTGY-RIS   54 (119)
T ss_dssp             CCCCCSCCC-SCCSSCCSCCCCSCC----------------EEESCCSSEEEEECCCC--------TTCCSCCCEE-EEE
T ss_pred             CCCCCCCCE-EEECCCCCCCCCCce----------------EEEECCCCEEEEEEcCC--------CCCCCcEEEE-EEE
Confidence            678888776 578888888888777                88889999999999965        4578889999 999


Q ss_pred             EEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        573 LRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       573 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      |+..+...      .|.     ........++++|.+|++++.|.|+|+|.|.+|.|++|+
T Consensus        55 ~~~~~~~~------~~~-----~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  104 (119)
T 1wfn_A           55 WEEYNRTN------TRV-----THYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSA  104 (119)
T ss_dssp             EEESSCGG------GCC-----CEEECSSCCEEEEESCCTTCEEEEEEEEECSSCEEEEEE
T ss_pred             EEECCCCC------ceE-----EEEeCCCceEEEEcCCCCCCEEEEEEEEEcCCccCCCCC
Confidence            99876432      011     122346788999999999999999999999999999874

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.47  E-value=5e-13  Score=109.52  Aligned_cols=89  Identities=24%  Similarity=0.261  Sum_probs=73.0

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEecc---CCCeEEEEeCCccC----CCCCeEEc---------ccceEEEccCCCCC
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGD---PLPTILWRRDDGKM----PTGRAKIL---------DDRSLQIENVGPQD  134 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~---p~p~i~W~~~~~~i----~~~~~~~~---------~~~~L~i~~v~~~d  134 (633)
                      .|.|+..|.++.+.+|+.++|.|.+.+.   |.|.|.|+|+....    ...+..+.         .+..|+|.+++.+|
T Consensus         7 ~~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   86 (126)
T 2dav_A            7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNF   86 (126)
T ss_dssp             SCSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTS
T ss_pred             ccEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCccc
Confidence            3678899999999999999999999764   89999999974211    01222221         13689999999999


Q ss_pred             CeEEEEEEEeCCceEEEEEEEEEEe
Q psy15127        135 EGLYICDVENLVGSISLRASLTVHL  159 (633)
Q Consensus       135 ~G~Y~C~~~n~~g~~s~~~~l~V~~  159 (633)
                      +|.|+|+|.|..|..++.+.|+|.+
T Consensus        87 aG~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           87 AGNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             CEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             CEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            9999999999999999999999998

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.46  E-value=1.4e-13  Score=111.90  Aligned_cols=93  Identities=25%  Similarity=0.501  Sum_probs=70.6

Q ss_pred             cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeE-E-cccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         68 ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAK-I-LDDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        68 v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~-~-~~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      +..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+|++..+...... . ..++.|.|.+++.+|+|.|+|.|.|.
T Consensus         7 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   86 (108)
T 3kvq_A            7 ERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSV   86 (108)
T ss_dssp             ----CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEEEEC--
T ss_pred             ccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEEEEEeC
Confidence            346788888899999999999999999999999999999999988654322 2 24578999999999999999999999


Q ss_pred             CceEEEEEEEEEEee
Q psy15127        146 VGSISLRASLTVHLL  160 (633)
Q Consensus       146 ~g~~s~~~~l~V~~~  160 (633)
                      .|..+..+.|.|..+
T Consensus        87 ~g~~~~~~~l~V~~~  101 (108)
T 3kvq_A           87 LGCAKVEAFFIIEGA  101 (108)
T ss_dssp             --CEEEEEEEEEEC-
T ss_pred             CCceEEEEEEEEeCC
Confidence            999999999999887

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.9e-13  Score=114.04  Aligned_cols=108  Identities=10%  Similarity=-0.010  Sum_probs=80.9

Q ss_pred             ccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeee-ecccceEEEEEEEecCCCcccccchhhhhcceeEE
Q psy15127        493 GLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELI-PTASTAVRITWEVSWGSVPQHLLDEARARLGTKVV  571 (633)
Q Consensus       493 G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i  571 (633)
                      |.|++|... .++|.+..|..+|..+               ++. ..++++|.|+|++|      .....+|.|++| .|
T Consensus         1 G~g~~S~~v-~~~T~~~~P~~~P~~~---------------~~~~~~s~~sv~l~W~pp------~~~~~~g~i~~Y-~v   57 (124)
T 2dbj_A            1 GSSGSSGWI-LASTTEGAPSVAPLNV---------------TVFLNESSDNVDIRWMKP------PTKQQDGELVGY-RI   57 (124)
T ss_dssp             CCSCCCCCC-CCCCSSCCCCSCCEEE---------------EEEECSSSSEEEEEEECC------SCCSTTCCEEEE-EE
T ss_pred             CcCCCCCCE-EEEccCCCCCCCCcce---------------EEEecCCCCEEEEEEcCC------CcccCCCeEeEE-EE
Confidence            678888776 5778888777555432               666 57899999999943      224578899999 99


Q ss_pred             EEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        572 NLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       572 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +|+......    ...|..    .  .....++++|.+|++++.|.|+|+|.|.+|.|++|+
T Consensus        58 ~~~~~~~~~----~~~~~~----~--~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~Gp~S~  109 (124)
T 2dbj_A           58 SHVWQSAGI----SKELLE----E--VGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSD  109 (124)
T ss_dssp             EEEEEETTE----EEEEEE----E--EESTTSCEEEECCCSSSEEEECEEEEESSCBCCCCC
T ss_pred             EEEECCCCC----ccceEE----E--eCCCcceEEecCCCCCCEEEEEEEEECCCccCCCCC
Confidence            997543321    123421    1  234678999999999999999999999999999985

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.46  E-value=8.8e-14  Score=130.46  Aligned_cols=114  Identities=16%  Similarity=0.216  Sum_probs=85.1

Q ss_pred             EeeCceEEEcCCCC--CCeEEEEEEe-------------cCcC---CeeeeCCCceEEEcCCeE-EEEEEE-eccCCCeE
Q psy15127         44 SIFGSVLGARGALS--DDQWKLIAKE-------------ALIK---PFPISEPSDATVLSGSVV-EFVCRV-GGDPLPTI  103 (633)
Q Consensus        44 ~~~~~~L~i~~v~~--~G~Y~C~a~~-------------v~~~---p~~~~~~~~~~~~~G~~~-~L~C~~-~~~p~p~i  103 (633)
                      +..++.|.|.+++.  +|.|+|.|.+             +..+   |.+...+....+.+|+.+ .|.|.+ .+.|.|.+
T Consensus        73 ~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i  152 (231)
T 2pet_A           73 LDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKI  152 (231)
T ss_dssp             ECTTCCEEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEE
T ss_pred             cCCCceEEEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEE
Confidence            56667899999998  9999999987             2222   566666777777799988 999999 89999999


Q ss_pred             EEEeCCccCCCCC-----eEEcc------------cceEEEccCCCCCCeEEEEEEEeC-----Cce-EEEEEEEEE
Q psy15127        104 LWRRDDGKMPTGR-----AKILD------------DRSLQIENVGPQDEGLYICDVENL-----VGS-ISLRASLTV  157 (633)
Q Consensus       104 ~W~~~~~~i~~~~-----~~~~~------------~~~L~i~~v~~~d~G~Y~C~~~n~-----~g~-~s~~~~l~V  157 (633)
                      .|+|++..+....     ..+..            .+.|.|.....+|+|.|+|.|.|.     .+. .+..+.|.|
T Consensus       153 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V  229 (231)
T 2pet_A          153 TWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL  229 (231)
T ss_dssp             EEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred             EEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence            9999999886443     22211            156888766666799999999994     444 444455544

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.46  E-value=5.2e-14  Score=130.23  Aligned_cols=146  Identities=14%  Similarity=0.173  Sum_probs=97.0

Q ss_pred             cCCCCCCCCCCcccccccee----eEEEEecc---cCCCCCceEEe---eCceEEEcCCCC--CCeEEEEEEe-------
Q psy15127          7 TNHAHPMSSPRAEIEPATRT----NRVSISGD---PGFDSRRSRSI---FGSVLGARGALS--DDQWKLIAKE-------   67 (633)
Q Consensus         7 ~~~~~~~~~~~~~i~~~~~~----~~~~~~~~---~~~~~~~~~~~---~~~~L~i~~v~~--~G~Y~C~a~~-------   67 (633)
                      +.|.+. +.|.+.|.|+...    ....+...   ......|+.+.   .+++|.|.+++.  +|.|+|.|.+       
T Consensus        20 L~C~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~   98 (213)
T 3mj8_L           20 ITCSGD-KLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQSWDGTNSAWV   98 (213)
T ss_dssp             EEEECS-STTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTTTEEE
T ss_pred             EEEEcC-CCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEEeccCCcceeE
Confidence            334433 4567788876521    11111111   11123455533   245799999998  9999999987       


Q ss_pred             --------cC----cCCeeeeCCCceEEEcCCeEEEEEEEecc-CC-CeEEEEeCCccCCCCC---------eEEcccce
Q psy15127         68 --------AL----IKPFPISEPSDATVLSGSVVEFVCRVGGD-PL-PTILWRRDDGKMPTGR---------AKILDDRS  124 (633)
Q Consensus        68 --------v~----~~p~~~~~~~~~~~~~G~~~~L~C~~~~~-p~-p~i~W~~~~~~i~~~~---------~~~~~~~~  124 (633)
                              |.    .+|.+...+....+.+|+.++|.|.+.+. |. +.|.|+|+|..+..+.         ......+.
T Consensus        99 ~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~  178 (213)
T 3mj8_L           99 FGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSY  178 (213)
T ss_dssp             EBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEETTEEEEEEE
T ss_pred             EcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEE
Confidence                    22    45666555555445579999999999875 44 4899999999885421         11112356


Q ss_pred             EEEccCCCCCCeEEEEEEEeCCceEEEEE
Q psy15127        125 LQIENVGPQDEGLYICDVENLVGSISLRA  153 (633)
Q Consensus       125 L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~  153 (633)
                      |.|.+++.+|+|.|+|.|.|..+...+.+
T Consensus       179 L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3mj8_L          179 LTMTADAWKSRNTFICKVTHGGNTVEKSL  207 (213)
T ss_dssp             EEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred             EEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence            99999999999999999999987665554

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.46  E-value=7.7e-14  Score=111.51  Aligned_cols=79  Identities=25%  Similarity=0.269  Sum_probs=64.1

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      .+.. ..+++.|+|++|        .++++.|++| +|+|+. ...       .|...+..   .....++|++.+|.++
T Consensus        15 ~v~~-~~~sv~L~W~pP--------~~~~~~I~gY-~vey~~-~~~-------~W~~~~~~---~~~~~t~~~v~~L~pg   73 (108)
T 1v5j_A           15 VAVR-TPRGVLLHWDPP--------ELVPKRLDGY-VLEGRQ-GSQ-------GWEVLDPA---VAGTETELLVPGLIKD   73 (108)
T ss_dssp             EEEE-CSSSEEEEEECC--------SCCSSCCCBE-EEEEEE-TTC-------CCEEEEEE---ECSSCCEEECCCCCTT
T ss_pred             EEEE-eCCEEEEEECCC--------CCCCCCCcEE-EEEEEe-CCC-------CcEEeeee---cCCCcCEEEeCCCCCC
Confidence            4544 467899999965        4578999999 999998 332       48754422   3467899999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|||.|.|..|.|+||+
T Consensus        74 ~~Y~FRV~A~n~~G~s~pS~   93 (108)
T 1v5j_A           74 VLYEFRLVAFAGSFVSDPSN   93 (108)
T ss_dssp             SCEECCBEEEETTEEEEECS
T ss_pred             CEEEEEEEEEcCCCCcCCCC
Confidence            99999999999999999996

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.45  E-value=3.4e-14  Score=130.18  Aligned_cols=109  Identities=14%  Similarity=0.202  Sum_probs=79.1

Q ss_pred             eCceEEEcCCCC--CCeEEEEEEecC-------c---------------------------------CCeeeeCCCceEE
Q psy15127         46 FGSVLGARGALS--DDQWKLIAKEAL-------I---------------------------------KPFPISEPSDATV   83 (633)
Q Consensus        46 ~~~~L~i~~v~~--~G~Y~C~a~~v~-------~---------------------------------~p~~~~~~~~~~~   83 (633)
                      .+++|.|.+++.  +|.|+|.+.+..       .                                 ++.+ ..++....
T Consensus        47 ~~~~L~i~~v~~~DsG~Y~C~~~~~~s~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~v~  125 (204)
T 1sy6_A           47 DKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGI-TQTPYKVS  125 (204)
T ss_dssp             SCCCEEEEEGGGCCEEEEEEESSSSCCCCEEEEEEC-------------------------------------CCCCEEE
T ss_pred             CCCeEEeCCCCcCCCEEEEEEecCCCCeeEEEEEEEeccccccccccccccccccccccccccccccccce-ecCCceee
Confidence            356899999988  999999986511       0                                 1112 22222223


Q ss_pred             EcCCeEEEEEEEeccCCCeEEEEeCCccCCCC---CeEEcccceEEEccC-CCCCCeEEEEEEEeCCce-EEEEEEEEE
Q psy15127         84 LSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRSLQIENV-GPQDEGLYICDVENLVGS-ISLRASLTV  157 (633)
Q Consensus        84 ~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~---~~~~~~~~~L~i~~v-~~~d~G~Y~C~~~n~~g~-~s~~~~l~V  157 (633)
                      .+|++++|.|.  +.|.|.|+|+|++..+...   ......++.|.|.++ +.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus       126 ~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~  202 (204)
T 1sy6_A          126 ISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA  202 (204)
T ss_dssp             EETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred             ecCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence            39999999998  7888999999999887542   233335789999999 999999999999999986 355555554

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.45  E-value=5.4e-13  Score=108.19  Aligned_cols=89  Identities=25%  Similarity=0.324  Sum_probs=72.8

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCC---CeEEEEeCCccCC----CCCeEEc---------ccceEEEccCCCC
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPL---PTILWRRDDGKMP----TGRAKIL---------DDRSLQIENVGPQ  133 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~---p~i~W~~~~~~i~----~~~~~~~---------~~~~L~i~~v~~~  133 (633)
                      ..|.|+..|..+.+.+|++++|.|.+.|.|.   |.|+|+|++....    ..+....         ....|.|.+++.+
T Consensus         3 p~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   82 (108)
T 3cx2_A            3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA   82 (108)
T ss_dssp             CCCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGG
T ss_pred             CccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCc
Confidence            4588889999999999999999999999988   9999999873211    1222221         1358999999999


Q ss_pred             CCeEEEEEEEeCCceEEEEEEEEEE
Q psy15127        134 DEGLYICDVENLVGSISLRASLTVH  158 (633)
Q Consensus       134 d~G~Y~C~~~n~~g~~s~~~~l~V~  158 (633)
                      |+|.|+|.|.|..|..++.+.|.|.
T Consensus        83 D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           83 FTGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             cCEEEEEEEecCCCceEEEEEEEEe
Confidence            9999999999999999999999886

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.45  E-value=6e-13  Score=107.28  Aligned_cols=82  Identities=28%  Similarity=0.415  Sum_probs=68.5

Q ss_pred             eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc---cCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                      ..+.+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..     ..++.+.   ...+|.|.++..+|+|.|+|.|.|..|..
T Consensus        21 ~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~-----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   95 (107)
T 3knb_B           21 RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAA-----SERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEA   95 (107)
T ss_dssp             CCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCC-----CSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             CcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccc-----eeeEEEeecCceEEEEEecCChhhCEEEEEEEEECCCEE
Confidence            345677899999999999999999999999998752     1233332   23479999999999999999999999999


Q ss_pred             EEEEEEEEEe
Q psy15127        325 TVRAFLQVRE  334 (633)
Q Consensus       325 ~~~~~l~v~~  334 (633)
                      +.++.|.|.+
T Consensus        96 ~~~~~l~V~~  105 (107)
T 3knb_B           96 YAAAAVTVLE  105 (107)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEEc
Confidence            9999999875

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=2.5e-13  Score=110.74  Aligned_cols=92  Identities=29%  Similarity=0.455  Sum_probs=79.7

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCC--CCeEEcc--cc--eEEEccCCCCCCeEEEEEE
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT--GRAKILD--DR--SLQIENVGPQDEGLYICDV  142 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~--~~~~~~~--~~--~L~i~~v~~~d~G~Y~C~~  142 (633)
                      ..+|.|...+....+.+|+.++|.|.+.+.|.+.|.|+|++..+..  .++.+..  ++  .|.|.+++.+|+|.|+|.|
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   85 (110)
T 2dm2_A            6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA   85 (110)
T ss_dssp             SCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEE
T ss_pred             CCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEE
Confidence            3578888889999999999999999999999999999999998864  3333332  22  6999999999999999999


Q ss_pred             EeCCceEEEEEEEEEEee
Q psy15127        143 ENLVGSISLRASLTVHLL  160 (633)
Q Consensus       143 ~n~~g~~s~~~~l~V~~~  160 (633)
                      .|..|..+..+.|.|..+
T Consensus        86 ~N~~g~~~~~~~l~V~~~  103 (110)
T 2dm2_A           86 ANPQGRISCTGRLMVQAV  103 (110)
T ss_dssp             ECTTCCEEECCCEEEECC
T ss_pred             EECCCeEEEEEEEEEECC
Confidence            999999999999999876

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.45  E-value=3.7e-13  Score=128.00  Aligned_cols=134  Identities=17%  Similarity=0.243  Sum_probs=92.2

Q ss_pred             CeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCc--c---C-------------CCCCeEEcc----cceEEEcc
Q psy15127         72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG--K---M-------------PTGRAKILD----DRSLQIEN  129 (633)
Q Consensus        72 p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~--~---i-------------~~~~~~~~~----~~~L~i~~  129 (633)
                      +.+...|..+.+.+|++++|.|.+. .+.+.+.|+|+..  .   +             ..+++....    +..|.|.+
T Consensus         4 ~~v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~   82 (252)
T 1oga_E            4 GGITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTS   82 (252)
T ss_dssp             -CEECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECS
T ss_pred             ccceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECc
Confidence            3456678889999999999999985 4578899998531  1   0             123444432    35899999


Q ss_pred             CCCCCCeEEEEEEEeCC---ceEEEEEEEEEEee-----cccccc-CCCceEEecCCcEEEEEeCCCCCCC-CeEEEEEC
Q psy15127        130 VGPQDEGLYICDVENLV---GSISLRASLTVHLL-----RDDFRA-EPKDTRVASGETALLECGPPKGQPE-PTLHWKKN  199 (633)
Q Consensus       130 v~~~d~G~Y~C~~~n~~---g~~s~~~~l~V~~~-----~p~~~~-~~~~~~~~~g~~~~l~C~~~~~~p~-~~i~W~~~  199 (633)
                      ++.+|+|.|.|.+.+..   ......+.|.|...     +|.+.+ .+....+.+|+.+.|.|.+....|. +.+.|+++
T Consensus        83 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~  162 (252)
T 1oga_E           83 AQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN  162 (252)
T ss_dssp             CCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             CChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEEC
Confidence            99999999999999851   22223345777642     233332 2333344578999999995434575 49999999


Q ss_pred             CEEeccC
Q psy15127        200 GQFIDLE  206 (633)
Q Consensus       200 ~~~~~~~  206 (633)
                      |..+...
T Consensus       163 g~~l~~~  169 (252)
T 1oga_E          163 GKEVHSG  169 (252)
T ss_dssp             TEEECSS
T ss_pred             CEECCCC
Confidence            9987643

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.45  E-value=1.1e-12  Score=121.99  Aligned_cols=113  Identities=18%  Similarity=0.255  Sum_probs=85.5

Q ss_pred             CceEEEcCCCC--CCeEEEEEEe-----------cCc---CCeeeeCCCceEEEcCCeEEEEEEE-eccCCCeEEEEe-C
Q psy15127         47 GSVLGARGALS--DDQWKLIAKE-----------ALI---KPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRR-D  108 (633)
Q Consensus        47 ~~~L~i~~v~~--~G~Y~C~a~~-----------v~~---~p~~~~~~~~~~~~~G~~~~L~C~~-~~~p~p~i~W~~-~  108 (633)
                      +++|.|.+++.  +|.|+|.+.+           +..   +|.+...+ ...+.+|+.++|.|.+ .+.|.+.+.|++ +
T Consensus        71 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~  149 (222)
T 4i0k_A           71 NASLRLQRVRVTDEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQ  149 (222)
T ss_dssp             BCCEEECSCCGGGCSCEEEEEEECCCCCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTT
T ss_pred             eEEEEECCcccccCEEEEEEEEeCCCceEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCC
Confidence            57899999998  9999999997           222   35565554 3467899999999999 788999999999 4


Q ss_pred             CccCCCCCeE-E--cccc---eEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEee
Q psy15127        109 DGKMPTGRAK-I--LDDR---SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLL  160 (633)
Q Consensus       109 ~~~i~~~~~~-~--~~~~---~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~  160 (633)
                      +..+...... .  ..++   .|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  207 (222)
T 4i0k_A          150 GVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQ  207 (222)
T ss_dssp             SCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC-
T ss_pred             CccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCC
Confidence            5555432111 1  1222   3889999999999999999999999999999999887

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*

Probab=99.45  E-value=2e-12  Score=130.23  Aligned_cols=185  Identities=9%  Similarity=0.075  Sum_probs=115.1

Q ss_pred             CCCCCCCcEEEEee-CCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEE
Q psy15127        409 FPGPPAAPVILNTT-RGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVR  487 (633)
Q Consensus       409 ~p~~p~~~~~~~~~-~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~  487 (633)
                      .|.+|.++.+.... ..++.|+|+|+......++.+..|.|+|+..+ ...|+..... .  .....++..+..|+|||+
T Consensus        31 ~~~pP~nl~v~~~~~~~~v~LsW~p~~~~~~~~~~~~~Y~v~~~~~~-~~~w~~~~~~-~--~~~~~~~~l~~~y~~rV~  106 (380)
T 3lb6_C           31 KVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIG-SETWKTIITK-N--LHYKDGFDLNKGIEAXIH  106 (380)
T ss_dssp             CCCCCEEEEEECCSSSSEEEEEEECCCC------CCCEEEEEEEETT-CSSCEEEEES-S--SEEEEECCTTSCEEEEEE
T ss_pred             cCCcCCceEEEecCcCceEEEEECCCCCccccccceEEEEEEECCCC-CCcceEEEec-c--EEEEEeecCCCceEEEEE
Confidence            35678888877665 68999999999863112356899999999876 3568765433 2  234456677999999999


Q ss_pred             EEec----cccCCCCCCCCcee--ec-CCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccc
Q psy15127        488 AENS----HGLGIPSPVSPITR--TL-GLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLD  560 (633)
Q Consensus       488 a~n~----~G~g~~s~~~~~~~--t~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~  560 (633)
                      |.|.    .|.|.+|.++....  +. +.+|.+|.++                +....+.+++.++|+++         .
T Consensus       107 a~~~~~~~~g~g~~S~~s~~~~~~~~eg~P~~~P~nl----------------~C~~~~~~~l~csW~p~---------~  161 (380)
T 3lb6_C          107 TLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDM----------------DCVYYNWQYLLCSWKPG---------I  161 (380)
T ss_dssp             EECCHHHHSSSCCBCCCEEEEECCCCCSCTTSSCEEE----------------EEEEETTTEEEEEEECC----------
T ss_pred             eecCCcccCCccCccccchhhcccCCCCCCCCCCcEe----------------EEEECCCcEEEEEEcCC---------C
Confidence            9976    78888776653222  23 3344455544                66677889999999953         2


Q ss_pred             hhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEee--ccccceeEEEEEecccccccccc
Q psy15127        561 EARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVT--HLRKFTKYEFFLVPFFKTVEGAR  631 (633)
Q Consensus       561 ~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~--~L~~~t~Y~~~v~a~n~~g~g~~  631 (633)
                      ..+..++| .++|+..+...    ..++..+    ....+....+.+.  +|.+++.|.|+|.|.|..|.++.
T Consensus       162 ~~~~~~~Y-~l~y~~~~~~~----~~~C~~~----~~~~g~~~~C~~~~~~~~~~~~Y~i~V~a~n~~G~~~s  225 (380)
T 3lb6_C          162 GVLLDTNY-NLFYWYEGLDH----ALQCVDY----IKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRS  225 (380)
T ss_dssp             -----CCE-EEEEECTTCSS----CEECSEE----EEC--CEEEEECCCCTTCSSSCEEEEEEEC-----CCC
T ss_pred             CCCCCccE-EEEEEECCCCc----cccCCCc----cccCCceEEEEeCCCcccceeEEEEEEEEEcCCeeecc
Confidence            23678899 99998765432    0122211    1111233355555  67899999999999999887754

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=2.3e-13  Score=108.38  Aligned_cols=87  Identities=21%  Similarity=0.274  Sum_probs=74.1

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEccc---ceEEEccCCCCCCeEEEEEEEeC
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDD---RSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~~---~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      .+|.|...+.++.+.+|+.+.|.|.+  .|.|.++|+|+|..+..+ +..+..+   ..|.|.+++.+|+|.|+|.|.|.
T Consensus         6 ~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   83 (100)
T 2yuz_A            6 SGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY   83 (100)
T ss_dssp             CCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS
T ss_pred             CCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC
Confidence            46788889999999999999999999  788999999999998654 4444333   37999999999999999999997


Q ss_pred             CceEEEEEEEEEEee
Q psy15127        146 VGSISLRASLTVHLL  160 (633)
Q Consensus       146 ~g~~s~~~~l~V~~~  160 (633)
                        ..+..+.|.|..+
T Consensus        84 --~~~~~a~L~V~~~   96 (100)
T 2yuz_A           84 --NVTLPAKVHVISG   96 (100)
T ss_dssp             --CCCEEEEEEEECC
T ss_pred             --CeeEEEEEEEeCC
Confidence              5567888888877

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.44  E-value=5.4e-13  Score=121.76  Aligned_cols=111  Identities=14%  Similarity=0.088  Sum_probs=79.4

Q ss_pred             eCceEEEcCCCC--CCeEEEEEEe---------------cCc---CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEE
Q psy15127         46 FGSVLGARGALS--DDQWKLIAKE---------------ALI---KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILW  105 (633)
Q Consensus        46 ~~~~L~i~~v~~--~G~Y~C~a~~---------------v~~---~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W  105 (633)
                      .++.|.|.+++.  +|.|+|.|.|               |..   +|.+...+ ...+.+|+.++|.|.+.+. .+.++|
T Consensus        56 ~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W  133 (198)
T 1ugn_A           56 KKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFIL  133 (198)
T ss_dssp             TTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEE
T ss_pred             cccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEEEEcccccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEE
Confidence            457899999998  9999999966               111   34554443 3678999999999999887 789999


Q ss_pred             EeCCccCCCCCeE--Ec----ccceEEEccCCCCCCeEEEEEEEeCCce-----EEEEEEEEEE
Q psy15127        106 RRDDGKMPTGRAK--IL----DDRSLQIENVGPQDEGLYICDVENLVGS-----ISLRASLTVH  158 (633)
Q Consensus       106 ~~~~~~i~~~~~~--~~----~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-----~s~~~~l~V~  158 (633)
                      +|+|..+......  ..    ..+.|.|.+++.+|+|.|+|.|.|..+.     .+..+.|.|.
T Consensus       134 ~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          134 CKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             EEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred             EECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence            9999877433211  11    1368999999999999999999998652     2556666664

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.44  E-value=1.1e-13  Score=111.86  Aligned_cols=90  Identities=29%  Similarity=0.541  Sum_probs=78.3

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEcc---cceEEEccCCCCCCeEEEEEEEe
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILD---DRSLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                      ..+|.|...|..+.+.+|+.+.|.|.+.|.|.|.+.|+|++..+..+ +.....   ...|.|.+++.+|+|.|+|.|.|
T Consensus        12 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   91 (106)
T 1nct_A           12 TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVEN   91 (106)
T ss_dssp             SCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBC
T ss_pred             CCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEe
Confidence            45688999999999999999999999999999999999999988654 333332   36899999999999999999999


Q ss_pred             CCceEEEEEEEEEE
Q psy15127        145 LVGSISLRASLTVH  158 (633)
Q Consensus       145 ~~g~~s~~~~l~V~  158 (633)
                      ..|..+..+.|.|.
T Consensus        92 ~~G~~~~~~~l~V~  105 (106)
T 1nct_A           92 SEGKQEAEFTLTIQ  105 (106)
T ss_dssp             SSCBCCEEEEEEEC
T ss_pred             CCCeEEEEEEEEEE
Confidence            99998888888875

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.44  E-value=2e-12  Score=117.28  Aligned_cols=105  Identities=13%  Similarity=0.146  Sum_probs=76.8

Q ss_pred             CceEEeeCceEEEcCCCC--CCeEEEEEEe------------cCcC---CeeeeCCCceEEEcCC-eEEEEEEEecc-CC
Q psy15127         40 RRSRSIFGSVLGARGALS--DDQWKLIAKE------------ALIK---PFPISEPSDATVLSGS-VVEFVCRVGGD-PL  100 (633)
Q Consensus        40 ~~~~~~~~~~L~i~~v~~--~G~Y~C~a~~------------v~~~---p~~~~~~~~~~~~~G~-~~~L~C~~~~~-p~  100 (633)
                      .|+.+..+++|+|.+++.  +|.|+|.+.+            |..+   |.+...+  .....|. .++|.|.+.+. |.
T Consensus        62 ~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~  139 (193)
T 2if7_A           62 KRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDADDN  139 (193)
T ss_dssp             TTEEECTTCCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESCCTT
T ss_pred             ccEEECCCeEEEECCCCcccCceEEEEEEecCCCeEEEEEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecCCCc
Confidence            366677789999999998  9999999988            2111   3333333  1234565 89999999984 58


Q ss_pred             CeEEEEeCCccCCCCCeEEcccceEEEccCCCC-CCeEEEEEEEeCCceEEEEE
Q psy15127        101 PTILWRRDDGKMPTGRAKILDDRSLQIENVGPQ-DEGLYICDVENLVGSISLRA  153 (633)
Q Consensus       101 p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~-d~G~Y~C~~~n~~g~~s~~~  153 (633)
                      |.|+|+|+|..+..       ...|.|.....+ |+|.|+|.|.|..|..+..+
T Consensus       140 p~i~W~~~g~~l~~-------~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~  186 (193)
T 2if7_A          140 VSFRWEALGNTLSS-------QPNLTVSWDPRISSEQDYTCIAENAVSNLSFSV  186 (193)
T ss_dssp             CEEEEEETTEEEES-------SSEEEEEECTTTCSCCEEEEEEEETTEEEEEEE
T ss_pred             eEEEEEeCCEEcCC-------CCeEEEEeccCcCCCCcEEEEEECCCCcccccc
Confidence            89999999876532       346777655554 89999999999999876544

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.43  E-value=4.2e-13  Score=135.51  Aligned_cols=128  Identities=16%  Similarity=0.175  Sum_probs=87.5

Q ss_pred             eCCCceE-EEcCCeEEEEEEEecc-CCC---eEEEEeCCccCCCC---------CeEEcccceEEEccCCCCCCeEEEEE
Q psy15127         76 SEPSDAT-VLSGSVVEFVCRVGGD-PLP---TILWRRDDGKMPTG---------RAKILDDRSLQIENVGPQDEGLYICD  141 (633)
Q Consensus        76 ~~~~~~~-~~~G~~~~L~C~~~~~-p~p---~i~W~~~~~~i~~~---------~~~~~~~~~L~i~~v~~~d~G~Y~C~  141 (633)
                      ..|.... +..|++++|.|.+.+. |.|   .|+|+|++..+...         .........|.|.+++.+|+|.|+|.
T Consensus       172 ~~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~  251 (376)
T 2aty_A          172 FPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCR  251 (376)
T ss_pred             eCcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEE
Confidence            3343334 7899999999999887 333   69999998765321         01111234799999999999999999


Q ss_pred             EEeCCceEEEEEEE----EEEeeccccccCCCceEEecCCcEEEEEeCCCCCC-CCeEEEEECCEEec
Q psy15127        142 VENLVGSISLRASL----TVHLLRDDFRAEPKDTRVASGETALLECGPPKGQP-EPTLHWKKNGQFID  204 (633)
Q Consensus       142 ~~n~~g~~s~~~~l----~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~i~W~~~~~~~~  204 (633)
                      +.+..+.......+    .+..+ |.+.+.+.......|+.++|.|.+...+| ...|.|+|||..+.
T Consensus       252 ~~~~~~~~~~~~~v~~~~~~~~~-P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~  318 (376)
T 2aty_A          252 VNSAAFPAPIEKTISKTKGRPKA-PQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAE  318 (376)
T ss_pred             EecCCCCCceEEEEcCCCCCCcC-CeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECC
Confidence            99876643222222    33334 66666665555556899999999543355 46999999988653

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.43  E-value=2.9e-13  Score=125.39  Aligned_cols=113  Identities=12%  Similarity=0.170  Sum_probs=87.1

Q ss_pred             CceEEEcCCCC--CCeEEEEEEe-------------c-CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCc
Q psy15127         47 GSVLGARGALS--DDQWKLIAKE-------------A-LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG  110 (633)
Q Consensus        47 ~~~L~i~~v~~--~G~Y~C~a~~-------------v-~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~  110 (633)
                      +++|.|.+++.  +|.|.|.+.+             + ..++.....+....+.+|+.+.|.|.+.+.|.|.|+|++++.
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~  157 (218)
T 4frw_A           78 DGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVK  157 (218)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSC
T ss_pred             eEEEEEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCc
Confidence            46799999998  9999999987             1 122333344455667789999999999999999999999998


Q ss_pred             cCCCCCeEEcc-----cceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy15127        111 KMPTGRAKILD-----DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHL  159 (633)
Q Consensus       111 ~i~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~  159 (633)
                      .+.........     .+.|.|.++..+|+|.|+|.|.|..|..+..+.+.|..
T Consensus       158 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~V  211 (218)
T 4frw_A          158 GTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILHV  211 (218)
T ss_dssp             CEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCE
T ss_pred             ccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEEE
Confidence            77543222221     24799999999999999999999998876666665543

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=1.8e-13  Score=111.60  Aligned_cols=92  Identities=32%  Similarity=0.543  Sum_probs=79.9

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCe-EE--ccc--ceEEEccCCCCCCeEEEEEEE
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRA-KI--LDD--RSLQIENVGPQDEGLYICDVE  143 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~-~~--~~~--~~L~i~~v~~~d~G~Y~C~~~  143 (633)
                      ..+|.|...+..+.+.+|+.++|.|.+.+.|.+.|.|+|++..+..... ..  ..+  ..|.|.+++.+|+|.|+|.|.
T Consensus         7 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   86 (110)
T 2dm3_A            7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIAT   86 (110)
T ss_dssp             CCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEE
T ss_pred             CCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEE
Confidence            3578999999999999999999999999999999999999998865432 21  122  389999999999999999999


Q ss_pred             eCCceEEEEEEEEEEee
Q psy15127        144 NLVGSISLRASLTVHLL  160 (633)
Q Consensus       144 n~~g~~s~~~~l~V~~~  160 (633)
                      |..|..+..+.|.|..+
T Consensus        87 n~~g~~~~~~~l~V~~~  103 (110)
T 2dm3_A           87 NRAGQNSFSLELVVAAK  103 (110)
T ss_dssp             CSSCEEEECCEEEEECC
T ss_pred             CCCCEEEEEEEEEEeCC
Confidence            99999999999999886

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.43  E-value=2.1e-12  Score=114.01  Aligned_cols=123  Identities=17%  Similarity=0.263  Sum_probs=90.5

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCe-EEEEeCCccCCCCCeEE----cccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPT-ILWRRDDGKMPTGRAKI----LDDRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~-i~W~~~~~~i~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      +...|+...+.+|+++.|.|.+.. +.|. +.|.-.   +  .+...    .....|.|.+++. | |.|.|.+......
T Consensus         2 v~v~P~~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~---l--~~~~~~~~~~~~~~l~l~~vs~-~-g~y~C~~~c~~~~   73 (185)
T 1iam_A            2 TSVSPSKVILPRGGSVLVTCSTSC-DQPKLLGIETP---L--PKKELLLPGNNRKVYELSNVQE-D-SQPMCYSNCPDGQ   73 (185)
T ss_dssp             EEEESSEEEEETTEEEEEEEEECS-SSCSEEEEECS---S--CEEEECSSSSSEEEEEEEEECS-C-BCCEEEEECSSCE
T ss_pred             eEEECCCcEEeCCCCEEEEEEccC-CCCccceEEee---C--CCccEeccCCceeEEEEEecCc-C-CEEEEEEECCCCc
Confidence            345677788999999999999964 4554 777631   1  11111    1124689999984 4 9999999766556


Q ss_pred             EEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCC--eEEEEECCEEec
Q psy15127        149 ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP--TLHWKKNGQFID  204 (633)
Q Consensus       149 ~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~i~W~~~~~~~~  204 (633)
                      .++.+.|.|..+|..+.+.+....+.+|+.++|.|.+..+.|..  .|.|+|++..+.
T Consensus        74 ~~~~~~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~  131 (185)
T 1iam_A           74 STAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELK  131 (185)
T ss_dssp             EEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEE
T ss_pred             eEEEEEEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcc
Confidence            88999999999866677777777789999999999966667764  478888877664

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} SCOP: b.1.2.1 PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C

Probab=99.43  E-value=4.2e-13  Score=107.13  Aligned_cols=84  Identities=12%  Similarity=0.108  Sum_probs=63.4

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      .+..+++++|.|+|++|      .....+|.|+|| .|.|++.+....    ..|.     .+.+.+..++++|.+|+|+
T Consensus        12 ~~~~~s~tsi~v~W~~p------~~~~~ng~i~gY-~v~y~~~~~~~~----~~~~-----~~~v~~~~~~~~l~~L~p~   75 (102)
T 3n1f_C           12 YTEAVSDTQIMLKWTYI------PSSNNNTPIQGF-YIYYRPTDSDND----SDYK-----RDVVEGSKQWHMIGHLQPE   75 (102)
T ss_dssp             EEEECSSSCEEEEEECC------C-----CCCCEE-EEEEEETTCCCG----GGCE-----EEEEETTCSEEEECSCCTT
T ss_pred             EEEEcCCCEEEEEeECC------ChhhcCCccceE-EEEEEECCCCCC----CceE-----EEEEcCCceEEECCCCCCC
Confidence            78899999999999944      333478999999 999998764310    1232     2223345778999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|+|.+|.|++|+
T Consensus        76 t~Y~v~V~A~n~~G~G~~S~   95 (102)
T 3n1f_C           76 TSYDIKMQCFNEGGESEFSN   95 (102)
T ss_dssp             CEEEEEEEEEETTEECCCCC
T ss_pred             CEEEEEEEEECCCcCCCCCC
Confidence            99999999999999999985

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.43  E-value=5.2e-13  Score=125.01  Aligned_cols=121  Identities=19%  Similarity=0.290  Sum_probs=79.3

Q ss_pred             eCCCceEEEcCCeEEEEEEEec--cCCCeEEEEeCCc--c---C---------------CCCCeEEccc-----ceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGG--DPLPTILWRRDDG--K---M---------------PTGRAKILDD-----RSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~--~p~p~i~W~~~~~--~---i---------------~~~~~~~~~~-----~~L~i~  128 (633)
                      .+|+.+.+.+|++++|.|.+.+  .....+.|+|...  .   +               ..+|+....+     ..|+|.
T Consensus         5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (230)
T 3n9g_H            5 VQSGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELS   84 (230)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EecCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence            4455788999999999999975  2345799998421  1   0               0134443322     249999


Q ss_pred             cCCCCCCeEEEEEEEeCC-----c---eEEEEEEEEEEee---ccccccCCCceEEecCCcEEEEEeCCCCCC-CCeEEE
Q psy15127        129 NVGPQDEGLYICDVENLV-----G---SISLRASLTVHLL---RDDFRAEPKDTRVASGETALLECGPPKGQP-EPTLHW  196 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~n~~-----g---~~s~~~~l~V~~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~i~W  196 (633)
                      +++.+|+|.|.|.+.+..     +   .....+.|.|...   +|.+...+....+..|+.++|.|.+....| ...+.|
T Consensus        85 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W  164 (230)
T 3n9g_H           85 SLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW  164 (230)
T ss_dssp             SCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE
T ss_pred             CCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE
Confidence            999999999999998753     1   1223456777521   233333233334568999999999644455 457889

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.43  E-value=2.2e-13  Score=129.21  Aligned_cols=145  Identities=13%  Similarity=0.081  Sum_probs=83.3

Q ss_pred             CceEEEcCCCC--CCeEEEEEEe-----------------c---CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEE
Q psy15127         47 GSVLGARGALS--DDQWKLIAKE-----------------A---LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTIL  104 (633)
Q Consensus        47 ~~~L~i~~v~~--~G~Y~C~a~~-----------------v---~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~  104 (633)
                      ++.|.|.+++.  +|.|+|.+.+                 |   ..+|.+...|. ..+.+|++++|.|.+.+. .+.+.
T Consensus        61 ~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~-~~~~~  138 (257)
T 1b6u_A           61 KANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSS-YDMYH  138 (257)
T ss_dssp             EEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSC-CSEEE
T ss_pred             eEEEEeecCCcccCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCC-CcEEE
Confidence            46799999998  9999999964                 1   23456665554 357899999999998765 46899


Q ss_pred             EEeCCccCCCCCe-EEc----ccceEEEccCCCCCCeEEEEEEEeCCc-----eEEEEEEEEEEeeccccccC-CCceEE
Q psy15127        105 WRRDDGKMPTGRA-KIL----DDRSLQIENVGPQDEGLYICDVENLVG-----SISLRASLTVHLLRDDFRAE-PKDTRV  173 (633)
Q Consensus       105 W~~~~~~i~~~~~-~~~----~~~~L~i~~v~~~d~G~Y~C~~~n~~g-----~~s~~~~l~V~~~~p~~~~~-~~~~~~  173 (633)
                      |+|+|..+..... ...    ....|.|.+++  |+|.|+|.+.+...     ..+..+.|.|... |.+..+ |.....
T Consensus       139 w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~-p~~~~p~~~~~~~  215 (257)
T 1b6u_A          139 LSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGN-PSNSWPSPTEPSS  215 (257)
T ss_dssp             EEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCC-C------------
T ss_pred             EEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEecc-CCCCCCCCcccCc
Confidence            9999987743211 111    24689999998  99999999996532     2467788889887 554422 223355


Q ss_pred             ecCCcEEEEEeCCCCCCCCeEEEEE
Q psy15127        174 ASGETALLECGPPKGQPEPTLHWKK  198 (633)
Q Consensus       174 ~~g~~~~l~C~~~~~~p~~~i~W~~  198 (633)
                      ..|..+.|.|.  .|.+.+.+.|..
T Consensus       216 ~~g~~~~l~~~--~~~~~~~~~~~~  238 (257)
T 1b6u_A          216 ETGNPRHLHAA--AEQKLISEEDLN  238 (257)
T ss_dssp             -------------------------
T ss_pred             cCCCeEEEEEE--EcchHHHHHHhh
Confidence            67999999987  577778888864

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=1.7e-13  Score=110.94  Aligned_cols=90  Identities=22%  Similarity=0.267  Sum_probs=73.3

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEecc---CCCeEEEEeCCc-cCCC---CCeEEc---------ccceEEEccCCCCC
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGD---PLPTILWRRDDG-KMPT---GRAKIL---------DDRSLQIENVGPQD  134 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~---p~p~i~W~~~~~-~i~~---~~~~~~---------~~~~L~i~~v~~~d  134 (633)
                      .+.|+..|.++.+.+|+.++|.|.+.+.   |.|.|.|+|+.. .+..   .++.+.         .+..|+|.+++.+|
T Consensus        12 ~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   91 (118)
T 2edn_A           12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGD   91 (118)
T ss_dssp             SSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTT
T ss_pred             cceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhh
Confidence            4668888999999999999999999874   789999999742 1211   122221         13689999999999


Q ss_pred             CeEEEEEEEeCCceEEEEEEEEEEee
Q psy15127        135 EGLYICDVENLVGSISLRASLTVHLL  160 (633)
Q Consensus       135 ~G~Y~C~~~n~~g~~s~~~~l~V~~~  160 (633)
                      +|.|+|.|.|..|..++.+.|.|.++
T Consensus        92 ~G~Y~Cevsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           92 RGYYRLEVKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             CSCEEEEEECSSCEEEEEECCEEECC
T ss_pred             CEEEEEEEEEcCCcEEEEEEEEEEcC
Confidence            99999999999999999999999875

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.42  E-value=1.3e-12  Score=103.62  Aligned_cols=87  Identities=23%  Similarity=0.335  Sum_probs=73.8

Q ss_pred             eeeeCCCceEEEcCCeEEEEEEEecc-CCCeEEEEeCCccCCCCC-eEE-cccc--eEEEccCCCCCCeEEEEEEEeCCc
Q psy15127         73 FPISEPSDATVLSGSVVEFVCRVGGD-PLPTILWRRDDGKMPTGR-AKI-LDDR--SLQIENVGPQDEGLYICDVENLVG  147 (633)
Q Consensus        73 ~~~~~~~~~~~~~G~~~~L~C~~~~~-p~p~i~W~~~~~~i~~~~-~~~-~~~~--~L~i~~v~~~d~G~Y~C~~~n~~g  147 (633)
                      .+...|.++.+.+|+.+.|.|.+.+. |.|.+.|+|++..+..+. ... ..++  .|.|.+++.+|+|.|+|.|.|..|
T Consensus         3 ~v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   82 (97)
T 2bk8_A            3 MVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYG   82 (97)
T ss_dssp             CEECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             ceeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCC
Confidence            45567788999999999999999997 899999999999886543 332 2333  899999999999999999999999


Q ss_pred             eEEEEEEEEEEe
Q psy15127        148 SISLRASLTVHL  159 (633)
Q Consensus       148 ~~s~~~~l~V~~  159 (633)
                      ..+..+.|.|..
T Consensus        83 ~~~~~~~l~V~~   94 (97)
T 2bk8_A           83 EDSSYAELFVKG   94 (97)
T ss_dssp             EEEEEEEEEETT
T ss_pred             eEeEEEEEEEEe
Confidence            988888888864

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.42  E-value=4.2e-13  Score=107.63  Aligned_cols=90  Identities=18%  Similarity=0.161  Sum_probs=71.6

Q ss_pred             cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeE-E-c---c----cceEEEccCCCCCCeEE
Q psy15127         68 ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAK-I-L---D----DRSLQIENVGPQDEGLY  138 (633)
Q Consensus        68 v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~-~-~---~----~~~L~i~~v~~~d~G~Y  138 (633)
                      |..+|.+..-..   ...|+.+.|.|.+.|.|.|.++|+|+|..+..+... . .   .    .+.|.|.+++.+|+|.|
T Consensus         1 V~~pP~i~~~~~---~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   77 (103)
T 1wwb_X            1 VHFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDY   77 (103)
T ss_dssp             CCCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEE
T ss_pred             CCCCCEEEeccC---ceECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEE
Confidence            345676542221   246789999999999999999999999988765432 1 1   1    23599999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEEee
Q psy15127        139 ICDVENLVGSISLRASLTVHLL  160 (633)
Q Consensus       139 ~C~~~n~~g~~s~~~~l~V~~~  160 (633)
                      +|.|.|..|..+..+.|.|..+
T Consensus        78 ~C~A~N~~G~~~~~~~l~V~~~   99 (103)
T 1wwb_X           78 TLIAKNEYGKDEKQISAHFMGW   99 (103)
T ss_dssp             EEEEECSSCEEEEEEEECCSCC
T ss_pred             EEEEEeCCCcEeEEEEEEECCC
Confidence            9999999999999999998876

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.42  E-value=5.7e-13  Score=124.06  Aligned_cols=113  Identities=12%  Similarity=0.172  Sum_probs=80.2

Q ss_pred             ceEEEcCCCC--CCeEEEEEEe-----------cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC-CccCC
Q psy15127         48 SVLGARGALS--DDQWKLIAKE-----------ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD-DGKMP  113 (633)
Q Consensus        48 ~~L~i~~v~~--~G~Y~C~a~~-----------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~-~~~i~  113 (633)
                      .+|.|.+++.  +|.|+|.+.+           |..+|..........+.+|+.++|.|.+.|.|.|.|+|+++ +..+.
T Consensus        80 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~  159 (222)
T 3sbw_C           80 AALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLS  159 (222)
T ss_dssp             EEEEESSCCGGGCEEEEEEEESSSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEEC
T ss_pred             EEEEEcCcccccCeEEEEEEEeCCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceec
Confidence            4799999998  9999999987           22222211111112567899999999999999999999998 55554


Q ss_pred             CCCeE-Ec--ccceE---EEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEee
Q psy15127        114 TGRAK-IL--DDRSL---QIENVGPQDEGLYICDVENLVGSISLRASLTVHLL  160 (633)
Q Consensus       114 ~~~~~-~~--~~~~L---~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~  160 (633)
                      ..... ..  .++.+   .+..+..+|+|.|+|.|.|..|.....+.|.|...
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~  212 (222)
T 3sbw_C          160 GKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPEL  212 (222)
T ss_dssp             CEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC
T ss_pred             CccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCC
Confidence            33211 11  12222   22245679999999999999999999999998865

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.42  E-value=3.2e-13  Score=110.92  Aligned_cols=102  Identities=16%  Similarity=0.091  Sum_probs=78.5

Q ss_pred             ccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEE
Q psy15127        493 GLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVN  572 (633)
Q Consensus       493 G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~  572 (633)
                      |.|++|... .++|.+++|..+|..+               ++.. +.++|.|+|++|      .....+|.|++| .|.
T Consensus         1 G~G~~S~~v-~~~T~e~~P~~~P~~v---------------~~~~-~~~si~l~W~~p------~~~~~ng~i~gY-~v~   56 (117)
T 1wj3_A            1 GSSGSSGTV-NVTTKKTPPSQPPGNV---------------VWNA-TDTKVLLNWEQV------KAMENESEVTGY-KVF   56 (117)
T ss_dssp             CCCCCCCCC-CCCCSCCCCCCCCCSC---------------BCCE-ETTEEEEECCCC------CCCSSSCCEEEE-EEE
T ss_pred             CcCCCCCCE-EEEecCCCCCCCCccE---------------EEEE-eCCEEEEEEcCC------CccccCCceeEE-EEE
Confidence            678888776 5788888888666543               5655 788999999943      334578999999 999


Q ss_pred             EEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        573 LRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       573 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      |+..+...       +     ..+  ....+.+++. |++++.|.|+|+|+|.+|+|++|+
T Consensus        57 y~~~~~~~-------~-----~~~--~~~~~~~~~~-L~~~t~Y~~~V~A~n~~G~Gp~S~  102 (117)
T 1wj3_A           57 YRTSSQNN-------V-----QVL--NTNKTSAELV-LPIKEDYIIEVKATTDGGDGTSSE  102 (117)
T ss_dssp             EEESSCSS-------C-----EEE--EESSSEEEEE-CCCSSCEEEEEEEEESSCCCCBCC
T ss_pred             EEECCCCC-------C-----eEE--eCCCcEEEEE-CCCCCEEEEEEEEECCCccCCCCC
Confidence            98876543       1     111  1235678888 999999999999999999999985

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.42  E-value=9e-13  Score=103.14  Aligned_cols=85  Identities=16%  Similarity=0.151  Sum_probs=69.5

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEccc---ceEEEccCCCCCCeEEEEEEEeC
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDD---RSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~~---~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      .+|.|...+.++.+.+|+.++|.|.+.+ +.+.++|+|+|..+..+ +..+..+   ..|.|.+++.+|+|.|+|.|.|.
T Consensus         4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~   82 (93)
T 1waa_A            4 ALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANT   82 (93)
T ss_dssp             CCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTE
T ss_pred             CCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCC
Confidence            4678899999999999999999999976 45789999999998654 4444333   47999999999999999999763


Q ss_pred             CceEEEEEEEEEEe
Q psy15127        146 VGSISLRASLTVHL  159 (633)
Q Consensus       146 ~g~~s~~~~l~V~~  159 (633)
                          ...+.|.|.+
T Consensus        83 ----~~sa~L~V~~   92 (93)
T 1waa_A           83 ----KSAANLKVKE   92 (93)
T ss_dssp             ----EEEEEEEEEC
T ss_pred             ----cEEEEEEEEc
Confidence                4567777765

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.42  E-value=5.2e-13  Score=110.67  Aligned_cols=104  Identities=17%  Similarity=0.096  Sum_probs=81.1

Q ss_pred             ccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeee-ecccceEEEEEEEecCCCcccccchhhhhcceeEE
Q psy15127        493 GLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELI-PTASTAVRITWEVSWGSVPQHLLDEARARLGTKVV  571 (633)
Q Consensus       493 G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i  571 (633)
                      |.|++|... .+.|....|.+|...                .+. .++.++|.|+|++|       ..+++..|++| .|
T Consensus         1 G~s~~S~~~-~~~t~~~~P~~P~~~----------------~~~~~~~~~sv~l~W~~p-------~~~gg~~i~~Y-~v   55 (120)
T 2crm_A            1 GSSGSSGVV-EFTTCPDKPGIPVKP----------------SVKGKIHSHSFKITWDPP-------KDNGGATINKY-VV   55 (120)
T ss_dssp             CCCTTCSCC-SCCSCCCCCCCCCCC----------------EEEEEEETTEEEEECCCC-------TTCCSSCCCEE-EE
T ss_pred             CCCCCcCCE-EEEeCCCCCCCCCCC----------------EEeeccCCCEEEEEECCC-------CcCCCCeeeEE-EE
Confidence            678888877 466888888877765                454 77899999999965       12235689999 99


Q ss_pred             EEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        572 NLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       572 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +|+......      .|...      ..+..+.++|.+|++++.|.|+|+|.|..|.|++|+
T Consensus        56 ~~~~~~~~~------~~~~~------~~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~  105 (120)
T 2crm_A           56 EMAEGSNGN------KWEMI------YSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSE  105 (120)
T ss_dssp             EEEESSSSC------CCEEE------ECSSCSEEEECSCCTTSCEEEEEEEEETTEECCCCC
T ss_pred             EEccCCCCc------CCEEE------EeccccEEEECCCCCCCEEEEEEEEEcCCccCCCcc
Confidence            999876522      36533      224588999999999999999999999999999985

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.42  E-value=1.9e-13  Score=112.97  Aligned_cols=103  Identities=14%  Similarity=0.150  Sum_probs=82.5

Q ss_pred             ccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEE
Q psy15127        493 GLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVN  572 (633)
Q Consensus       493 G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~  572 (633)
                      |.|.+|... .++|....|.+|..+                .+..++.++|.|+|++|        .+.++.|++| .|+
T Consensus         1 G~s~~S~~~-~~~t~~~~P~~P~~~----------------~~~~~~~~sv~l~W~~p--------~~~~~~i~~Y-~v~   54 (118)
T 1x3d_A            1 GSSGSSGAE-IFTTLSCEPDIPNPP----------------RIANRTKNSLTLQWKAP--------SDNGSKIQNF-VLE   54 (118)
T ss_dssp             CCCCCCCCC-CCCCCCSCCCCCCCC----------------EEEEEETTEEEEECCCC--------CCCSSCEEEE-EEE
T ss_pred             CCCCCCcCE-EEEcCCCCCcCCCCc----------------EEeccCCCEEEEEECCC--------CCCCCcceEE-EEE
Confidence            677778776 577888888887776                78888999999999965        3557889999 999


Q ss_pred             EEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        573 LRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       573 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      |+......      .|...     . ....+.++|.+|++++.|.|+|+|.|..|.|++|+
T Consensus        55 ~~~~~~~~------~~~~~-----~-~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~  103 (118)
T 1x3d_A           55 WDEGKGNG------EFCQC-----Y-MGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSE  103 (118)
T ss_dssp             ECTTTSSS------CCEEE-----E-EESCSEEEEESCCTTCEEEEECCEEESSCBCCCCC
T ss_pred             EecCCCCC------CeEEe-----e-ccCCcEEEeCCCCCCCEEEEEEEEEECCCCCCCcc
Confidence            98765422      36532     1 12458899999999999999999999999999985

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.41  E-value=9.7e-14  Score=133.06  Aligned_cols=156  Identities=15%  Similarity=0.133  Sum_probs=74.4

Q ss_pred             eEEEcCCCCCCeEEEEEEe------------cCcCCee-eeCCCceEEEcCCeEEEEEEEecc-CCC--eEEEEeCCccC
Q psy15127         49 VLGARGALSDDQWKLIAKE------------ALIKPFP-ISEPSDATVLSGSVVEFVCRVGGD-PLP--TILWRRDDGKM  112 (633)
Q Consensus        49 ~L~i~~v~~~G~Y~C~a~~------------v~~~p~~-~~~~~~~~~~~G~~~~L~C~~~~~-p~p--~i~W~~~~~~i  112 (633)
                      .|.|.+++..|.|+|.+..            +..+|.. ...+....+.+|+.++|.|.+.+. |..  .|+|+|++..+
T Consensus        51 ~~~l~~v~~~~~y~C~~~~~~~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l  130 (291)
T 1mq8_A           51 VYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKEL  130 (291)
T ss_dssp             EEEEESCCSCCCCEEEEECSSCEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEE
T ss_pred             EEEEEecccCCeEEEEEEcCCccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEe
Confidence            4888998887789999965            3444432 222222347889999999999765 433  58999999877


Q ss_pred             CCCCeEE-cccceEEEccCCCCCCeEEEEEEEeCCc--------eEEEEEEEEEEeeccccccCCCceEEecCCcEEEEE
Q psy15127        113 PTGRAKI-LDDRSLQIENVGPQDEGLYICDVENLVG--------SISLRASLTVHLLRDDFRAEPKDTRVASGETALLEC  183 (633)
Q Consensus       113 ~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~n~~g--------~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C  183 (633)
                      ....... ....+|.+...+.+|.+.|+|+|.+..+        ..++...|.|..+++..........+.+|+.++|.|
T Consensus       131 ~~~~~~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C  210 (291)
T 1mq8_A          131 KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVC  210 (291)
T ss_dssp             EEEECCBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC--------------------------
T ss_pred             ecccCCCCCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEE
Confidence            4321100 1124677777777777899999998754        245667888888743312111123678999999999


Q ss_pred             eCCCCC-CC--CeEEEEECCEEecc
Q psy15127        184 GPPKGQ-PE--PTLHWKKNGQFIDL  205 (633)
Q Consensus       184 ~~~~~~-p~--~~i~W~~~~~~~~~  205 (633)
                      . ..|. |.  ..+.|+++|+.+..
T Consensus       211 ~-~~g~~P~~~~~v~w~~~g~~l~~  234 (291)
T 1mq8_A          211 S-LDGLFPVSEAQVHLALGDQRLNP  234 (291)
T ss_dssp             -------------------------
T ss_pred             E-cCCCCCCcccEEEEEECCEecCc
Confidence            9 5665 44  26999999998864

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens}

Probab=99.41  E-value=2.9e-12  Score=117.30  Aligned_cols=181  Identities=13%  Similarity=0.054  Sum_probs=110.3

Q ss_pred             CCCCcEEEEe-eCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCC------C---CeEEEEEe--eeeceEEEecCCCC
Q psy15127        412 PPAAPVILNT-TRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQ------T---GWVVAAHR--ITSTSITVSDLKPD  479 (633)
Q Consensus       412 ~p~~~~~~~~-~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~------~---~~~~~~~~--~~~~~~~i~~L~p~  479 (633)
                      +|.++.+... ....+.-+|++....   ..+...|.+.|+..+..      .   .......-  ......+|..+...
T Consensus         3 ~~~nlsC~~~~~~~~~~C~W~~g~~~---~l~t~~~~l~~~~~~~~c~~~~~~~~~~~~~~C~~~~~~~~~C~~~~~~~~   79 (206)
T 3v6o_A            3 VNINISCETDGYLTKMTCRWSTSTIQ---SLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPIFLL   79 (206)
T ss_dssp             -CCCCEEEECTTSSCEEEEECCCC-----------EEEEEEECSSCCCSSCCCCSSCEEECEEECTTSCEEEEECSCCTT
T ss_pred             CCEEEEEEECCCCcEEEEEecCCCcC---CcccccEEEEEEEcCcCccccccccccCcCCCCCCCCCCCceEEeCcHHhc
Confidence            5677888776 568999999998743   12222688888764310      0   01111111  12346888889999


Q ss_pred             CeEEEEEEEEeccccCCCCCCCCceee-cCCCCCCCcchHHHHHHHhCCceEEeeeeeec-ccceEEEEEEEecCCCccc
Q psy15127        480 TSYMFIVRAENSHGLGIPSPVSPITRT-LGLNSLVPQHLLDEARARLGTKVVNLRELIPT-ASTAVRITWEVSWGSVPQH  557 (633)
Q Consensus       480 ~~Y~~~v~a~n~~G~g~~s~~~~~~~t-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~si~v~W~~p~~~~p~~  557 (633)
                      +.|.|+|.|.|..|.+. +... .+.. ....|.+|.++                .+... ...++.|+|++|       
T Consensus        80 ~~Y~~~V~a~N~~G~~~-s~~~-~~~~~~~vkp~pP~~l----------------~v~~~~~~~~l~l~W~~P-------  134 (206)
T 3v6o_A           80 SGYTMWIRINHSLGSLD-SPPT-CVLPDSVVKPLPPSSV----------------KAEITINIGLLKISWEKP-------  134 (206)
T ss_dssp             SCEEEEEEEC---CCEE-CCCE-EECGGGGBCCCCCCSC----------------EEEEETTTTEEEEEC----------
T ss_pred             ccEEEEEEEEcCCcccc-CCcc-cEeecceEcCCCCCce----------------EeEEecCCCeEEEEECCC-------
Confidence            99999999999999875 3332 2322 22345555544                55544 688999999965       


Q ss_pred             ccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        558 LLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       558 ~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                       ... ..+..| .|+|+..+...      .|+....    .......+.|.+|+|++.|.|+|+|.+..|.|.+||
T Consensus       135 -~~~-~~~l~y-ev~y~~~~~~~------~w~~~~~----~~~~~~~~~l~~L~p~t~Y~vqVRa~~~~~~G~WSe  197 (206)
T 3v6o_A          135 -VFP-ENNLQF-QIRYGLSGKEV------QWKMYEV----YDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSN  197 (206)
T ss_dssp             -------CEEE-EEEEEESSSSC------CCEEEEE----CC---CEEEECCSCTTSCEEEEEEEEETTSCSCCCC
T ss_pred             -CCC-CCcEEE-EEEEEECCCCC------ceEEEec----ccCcceeEEeecCCCCCEEEEEEEEecCCCCCcCCC
Confidence             111 246899 99999876322      3754321    122245799999999999999999999999999886

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1

Probab=99.41  E-value=3.2e-13  Score=108.84  Aligned_cols=82  Identities=16%  Similarity=0.150  Sum_probs=63.9

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhh-hcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeecccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARA-RLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRK  612 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~-i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~  612 (633)
                      .+...+.+ +.|+|++|        ...+|. |.+| .|+|+..+...       |... ...+...+..++++|.+|+|
T Consensus        14 ~~~~~~~~-v~l~W~~P--------~~~~G~pi~~Y-~v~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~i~~L~p   75 (105)
T 2haz_A           14 QVEPYSST-AQVQFDEP--------EATGGVPILKY-KAEWRAVGEEV-------WHSK-WYDAKEASMEGIVTIVGLKP   75 (105)
T ss_dssp             EEEECSSC-EEEEEECC--------SCCTTSCCCEE-EEEEEETTCCC-------CEEE-EEEHHHHHHHSEEEECSCCT
T ss_pred             EEEEcCCc-EEEEEcCC--------cccCCccccEE-EEEEEECCCCC-------Cccc-eEEccccCCccEEEECCCCC
Confidence            67777777 99999965        456677 9999 99999887653       4211 01122223578999999999


Q ss_pred             ceeEEEEEeccccccccccCC
Q psy15127        613 FTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       613 ~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      ++.|.|+|+|.|.+|.|++|+
T Consensus        76 ~t~Y~~rV~A~n~~G~g~~S~   96 (105)
T 2haz_A           76 ETTYAVRLAALNGKGLGEISA   96 (105)
T ss_dssp             TCEEEEEEEEEETTEECCCCC
T ss_pred             CCEEEEEEEEEcCCccCCCcC
Confidence            999999999999999999985

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.41  E-value=5.9e-13  Score=125.21  Aligned_cols=114  Identities=18%  Similarity=0.115  Sum_probs=85.9

Q ss_pred             eCceEEEcCCCC--CCeEEEEEEe--------------c---CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEE
Q psy15127         46 FGSVLGARGALS--DDQWKLIAKE--------------A---LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWR  106 (633)
Q Consensus        46 ~~~~L~i~~v~~--~G~Y~C~a~~--------------v---~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~  106 (633)
                      .++.|.|.+++.  +|.|+|.+.+              |   ..+|.+...| ...+.+|++++|.|.+.+. .+.+.|+
T Consensus        58 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~  135 (242)
T 1p6f_A           58 NKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLL  135 (242)
T ss_dssp             CEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEES-CSEEETTCEEEEEEECTTS-CSEEEEE
T ss_pred             ceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEEeecccCCCceEccC-CCccCCCCcEEEEEecCCC-CCEEEEE
Confidence            346799999998  9999999976              1   1256666555 4568999999999998754 5689999


Q ss_pred             eCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCC---ceEEEEEEEEEEeec
Q psy15127        107 RDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLV---GSISLRASLTVHLLR  161 (633)
Q Consensus       107 ~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~---g~~s~~~~l~V~~~~  161 (633)
                      |+|..+............|.|.+++.+|+|.|+|.+.|..   ...+..+.|.|.++.
T Consensus       136 k~g~~~~~~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~  193 (242)
T 1p6f_A          136 KEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDI  193 (242)
T ss_dssp             ECSSSCEEEEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC--
T ss_pred             ECCCccCccccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEeccC
Confidence            9998765321122235689999999999999999999864   225677888888753

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.41  E-value=9.6e-13  Score=107.68  Aligned_cols=76  Identities=16%  Similarity=0.154  Sum_probs=66.0

Q ss_pred             cCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEE---c--------ccceEEEccCCCCCCeEEEEEEEeCCceEEEEE
Q psy15127         85 SGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKI---L--------DDRSLQIENVGPQDEGLYICDVENLVGSISLRA  153 (633)
Q Consensus        85 ~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~---~--------~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~  153 (633)
                      .+..+.|.|.+.|+|.|.|+|+|||.+|..+.+..   .        ..+.|.|.+++..|+|.|+|.|.|..|..+..+
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~   93 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI   93 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEE
Confidence            67789999999999999999999999997653321   1        135799999999999999999999999999999


Q ss_pred             EEEEEee
Q psy15127        154 SLTVHLL  160 (633)
Q Consensus       154 ~l~V~~~  160 (633)
                      .|.|...
T Consensus        94 ~l~v~~~  100 (126)
T 1he7_A           94 MAAFMDN  100 (126)
T ss_dssp             EECCCSC
T ss_pred             EEEEEcC
Confidence            9988876

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.40  E-value=4.7e-13  Score=111.55  Aligned_cols=102  Identities=29%  Similarity=0.350  Sum_probs=82.3

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEe--cCCCCeEEEEEe---eeeceEEEecCCCCCeEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSS--DLQTGWVVAAHR---ITSTSITVSDLKPDTSYM  483 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~--~~~~~~~~~~~~---~~~~~~~i~~L~p~~~Y~  483 (633)
                      .|++|..+.+..+..+++.|+|.++.+   ++.+|.+|.|+|+..  .....|......   .....++|.+|.|++.|.
T Consensus        17 ~P~~P~~l~~~~~~~~sv~l~W~p~~~---~~~~i~~Y~v~~~~~~~~~~~~w~~~~~~~~~~~~~~~~v~~L~p~t~Y~   93 (124)
T 1wis_A           17 LPGPPTNLGISNIGPRSVTLQFRPGYD---GKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYS   93 (124)
T ss_dssp             CCCCCEEEEEESCCSSCEEEEEECCCC---CSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTTSEEC
T ss_pred             CCccCCCCEEEEecCCEEEEEEECCCC---CCCcccEEEEEEEECCCCCCCCCeEeeeEccCCCceEEEeCCCCCCCEEE
Confidence            466777777888889999999988873   368899999999973  234567654322   456789999999999999


Q ss_pred             EEEEEEeccccCCCCCCCCceeecCCCCCC
Q psy15127        484 FIVRAENSHGLGIPSPVSPITRTLGLNSLV  513 (633)
Q Consensus       484 ~~v~a~n~~G~g~~s~~~~~~~t~~~~p~~  513 (633)
                      |||+|.|..|.|+++.....++|.+.+|..
T Consensus        94 frV~A~N~~G~s~~S~~~~~~~T~~~~P~~  123 (124)
T 1wis_A           94 FRMRQVNIVGTSPPSQPSRKIQTLQSGPSS  123 (124)
T ss_dssp             CCCEEECSSCBCCCCCCCCCEECCCSSCCC
T ss_pred             EEEEEEECCccCCCcCCccceEcCCCCCCC
Confidence            999999999999999876668888887764

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.40  E-value=3.7e-13  Score=124.47  Aligned_cols=109  Identities=13%  Similarity=0.159  Sum_probs=80.6

Q ss_pred             CceEEeeC---ceEEEcCCCC--CCeEEEEEEe-------------cC---cCCeeeeCCCceEEEcCCeEEEEEEEec-
Q psy15127         40 RRSRSIFG---SVLGARGALS--DDQWKLIAKE-------------AL---IKPFPISEPSDATVLSGSVVEFVCRVGG-   97 (633)
Q Consensus        40 ~~~~~~~~---~~L~i~~v~~--~G~Y~C~a~~-------------v~---~~p~~~~~~~~~~~~~G~~~~L~C~~~~-   97 (633)
                      .|+.+..+   .+|.|.+++.  +|.|+|.|.+             +.   .+|.+...+....+.+|+.++|.|.+.+ 
T Consensus        60 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~  139 (213)
T 3d9a_L           60 SRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNF  139 (213)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEE
T ss_pred             ccEEEEcCCCEEEEEECCCChhhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeee
Confidence            46655532   3899999998  9999999987             11   2555555444433457999999999987 


Q ss_pred             cCCC-eEEEEeCCccCCCC-CeEE----------cccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         98 DPLP-TILWRRDDGKMPTG-RAKI----------LDDRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        98 ~p~p-~i~W~~~~~~i~~~-~~~~----------~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      .|.+ .++|+|+|..+..+ ....          ...+.|.|.+++.+|+|.|+|.|.|....
T Consensus       140 ~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  202 (213)
T 3d9a_L          140 YPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  202 (213)
T ss_dssp             BSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             cCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCC
Confidence            5665 89999999987655 1111          11238999999999999999999998655

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=5e-13  Score=108.56  Aligned_cols=92  Identities=10%  Similarity=0.079  Sum_probs=72.3

Q ss_pred             ecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCccccee
Q psy15127        506 TLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVR  585 (633)
Q Consensus       506 t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~  585 (633)
                      |.+.+|.+|.++                ++..++.++|.|+|++|        ...+|.|++| .|+|+..+....    
T Consensus         3 T~~~~P~~p~~l----------------~~~~~~~~sv~l~W~~p--------~~~~g~i~~Y-~v~~~~~~~~~~----   53 (109)
T 2e7h_A            3 SGSSGPPAVSDI----------------RVTRSSPSSLSLAWAVP--------RAPSGAVLDY-EVKYHEKGAEGP----   53 (109)
T ss_dssp             SSCCSSCCCCCC----------------EEEEEETTEEEEECCCC--------CCSSSCCCEE-EEEEEETTCCST----
T ss_pred             CCCCCCCCCCcc----------------EEEecCCCEEEEEeCCC--------CCCCCcEeEE-EEEEEECCCCCC----
Confidence            566777777777                88899999999999965        3667899999 999998762210    


Q ss_pred             eeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        586 ITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       586 ~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                         ...  ..+  ....++++|.+|+|++.|.|+|+|.|.+|.|++|+
T Consensus        54 ---~~~--~~~--~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~   94 (109)
T 2e7h_A           54 ---SSV--RFL--KTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQ   94 (109)
T ss_dssp             ---TTS--EEE--EESSSEEEEESCCTTSCEEEEEEEECSSCBCCCCS
T ss_pred             ---cee--EEE--ccCCCEEEECCCCCCCeEEEEEEEEeCCccCCCCC
Confidence               111  111  23467999999999999999999999999999985

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.40  E-value=1.4e-12  Score=101.98  Aligned_cols=85  Identities=21%  Similarity=0.384  Sum_probs=72.6

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceE
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSI  149 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~  149 (633)
                      .++.+...|....+.+|+.+.|.|.+.|.|.|.+.|+|++..+....     .+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus         2 ~~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~   76 (91)
T 3bfo_A            2 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-----KKLYMVPYVDLEHQGTYWCHVYNDRDSQ   76 (91)
T ss_dssp             CCCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCC-----SSEEEESSCCGGGCEEEEEEEECSSCEE
T ss_pred             CceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCC-----CCeEEECCCCHHhCEEEEEEEEcCCCCE
Confidence            35788889999999999999999999999999999999998876542     3589999999999999999999999874


Q ss_pred             -EEEEEEEEEe
Q psy15127        150 -SLRASLTVHL  159 (633)
Q Consensus       150 -s~~~~l~V~~  159 (633)
                       +..+.|.|..
T Consensus        77 ~s~~~~l~V~~   87 (91)
T 3bfo_A           77 DSKKVEIIIDE   87 (91)
T ss_dssp             ECCCEEEEEC-
T ss_pred             EeeeEEEEEeh
Confidence             3556777754

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=1.2e-12  Score=110.89  Aligned_cols=107  Identities=17%  Similarity=0.175  Sum_probs=82.6

Q ss_pred             ccCCCCCCCCceeecCCCCCCCc-chHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEE
Q psy15127        493 GLGIPSPVSPITRTLGLNSLVPQ-HLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVV  571 (633)
Q Consensus       493 G~g~~s~~~~~~~t~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i  571 (633)
                      |.|++|... .++|.+..|..+| ++                ++..++.+++.|+|++|      .....+|.|.+| .|
T Consensus         1 G~g~~S~~~-~~~T~~~~P~~~P~~l----------------~~~~~~~~sv~l~W~~p------~~~~~~g~i~~Y-~v   56 (134)
T 2edx_A            1 GSSGSSGTI-EARTAQSTPSAPPQKV----------------MCVSMGSTTVRVSWVPP------PADSRNGVITQY-SV   56 (134)
T ss_dssp             CCCCCCCCC-CCSSCCSCCSSCSEEE----------------EEECSSSSEEEEEEECC------CSTTCSSCEEEE-EE
T ss_pred             CCCCCcCCE-EEEeCCCCCCCCCccc----------------EEEeCCCCEEEEEecCC------CccCCCCceeEE-EE
Confidence            678888776 5778888777444 55                78888999999999943      223567899999 99


Q ss_pred             EEEEcCCCcccceeeeeeccceeEee-cCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        572 NLRELIPTASTAVRITWEKYNMATVM-NAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       572 ~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +|+..+...       +..   ..+. .....++++|.+|++++.|.|+|+|.|..|.|++|+
T Consensus        57 ~~~~~~~~~-------~~~---~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  109 (134)
T 2edx_A           57 AYEAVDGED-------RGR---HVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESS  109 (134)
T ss_dssp             EEEESSSSC-------CCC---EEECCCBTTCSEEEEESCCTTCEEEEEEEEEETTBCCCCCC
T ss_pred             EEEECCCCC-------ccc---EEEEeeCCCccEEEeCCCCCCCEEEEEEEEEcCCCcCCCCC
Confidence            999876543       110   1111 246689999999999999999999999999999885

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.40  E-value=3.3e-13  Score=109.58  Aligned_cols=91  Identities=9%  Similarity=0.041  Sum_probs=73.4

Q ss_pred             ecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCccccee
Q psy15127        506 TLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVR  585 (633)
Q Consensus       506 t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~  585 (633)
                      |.+..|.+|.++                ++..++.++|.|+|++|        ...+|.|.+| .|+|+..+...     
T Consensus         3 T~~~~P~~P~~l----------------~~~~~~~~sv~l~W~~p--------~~~~g~i~~Y-~v~~~~~~~~~-----   52 (108)
T 2djs_A            3 SGSSGPSTVPIM----------------HQVSATMRSITLSWPQP--------EQPNGIILDY-EIRYYEKEHNE-----   52 (108)
T ss_dssp             SCCCCCCCCSCC----------------EEEEECSSEEEEECCCC--------SCCSSCEEEE-EEEEEETTSCS-----
T ss_pred             cCCCCCCCCcce----------------EEEecCCCEEEEEECCC--------CCCCCeEEEE-EEEEEECCCCC-----
Confidence            556677777776                78889999999999965        4577889999 99999876543     


Q ss_pred             eeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        586 ITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       586 ~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                        |..   ..  .....++++|.+|+|++.|.|+|+|.|..|.|++|+
T Consensus        53 --~~~---~~--~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~   93 (108)
T 2djs_A           53 --FNS---SM--ARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSG   93 (108)
T ss_dssp             --TTC---EE--EEESSSEEEEESCCTTCEEEEEEEEEESSCEEEECC
T ss_pred             --cce---eE--EecCccEEEEcCCCCCCEEEEEEEEEeCCEECCCCC
Confidence              211   11  224578999999999999999999999999999985

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.40  E-value=9.3e-13  Score=105.20  Aligned_cols=88  Identities=32%  Similarity=0.525  Sum_probs=72.2

Q ss_pred             cCCeeeeCC----CceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCC-----eEEcccceEEEccCCCCCCeEEEE
Q psy15127         70 IKPFPISEP----SDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR-----AKILDDRSLQIENVGPQDEGLYIC  140 (633)
Q Consensus        70 ~~p~~~~~~----~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~-----~~~~~~~~L~i~~v~~~d~G~Y~C  140 (633)
                      .+|.|...+    ..+.+.+|+.+.|.|.+.|.|.|.+.|+|++..+....     ........|.|.+++.+|+|.|+|
T Consensus         3 ~~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C   82 (100)
T 3caf_A            3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC   82 (100)
T ss_dssp             EEEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred             CCCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEE
Confidence            356776554    35678899999999999999999999999998875421     222334689999999999999999


Q ss_pred             EEEeCCceEEEEEEEEE
Q psy15127        141 DVENLVGSISLRASLTV  157 (633)
Q Consensus       141 ~~~n~~g~~s~~~~l~V  157 (633)
                      .|.|..|..+..+.|.|
T Consensus        83 ~a~N~~g~~~~~~~l~V   99 (100)
T 3caf_A           83 VVENEYGSINHTYHLDV   99 (100)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEeCCCEEEEEEEEEE
Confidence            99999999888888876

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.40  E-value=3.3e-12  Score=117.19  Aligned_cols=158  Identities=15%  Similarity=0.184  Sum_probs=98.7

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCc--cC-----------CCCCeEEccc------ceEEEccCCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG--KM-----------PTGRAKILDD------RSLQIENVGPQD  134 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~--~i-----------~~~~~~~~~~------~~L~i~~v~~~d  134 (633)
                      +...|..+.+.+|++++|.|.+.+.. +.+.|+|+..  .+           ..+|+....+      ..|.|.+++.+|
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D   82 (207)
T 1ypz_E            4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLED   82 (207)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGG
T ss_pred             cEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHH
Confidence            45667888999999999999997653 4899998532  11           1244444332      479999999999


Q ss_pred             CeEEEEEEEeCCc---------e--EEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCC-CeEEEEECCEE
Q psy15127        135 EGLYICDVENLVG---------S--ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPE-PTLHWKKNGQF  202 (633)
Q Consensus       135 ~G~Y~C~~~n~~g---------~--~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~i~W~~~~~~  202 (633)
                      +|.|.|.+.+..+         .  ....+.|.|... ......|. ..+..+ .+.|.|.+....|. +.+.|+++ ..
T Consensus        83 ~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~-~~~~~~P~-v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~-~~  158 (207)
T 1ypz_E           83 SGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPK-SQPPAKPS-VFIMKN-GTNVACLVKDFYPKEVTISLRSS-KK  158 (207)
T ss_dssp             CEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECC-CCCCCCCE-EEEEEE-TTEEEEEEEEESSSCCEEEEECS-SE
T ss_pred             CEEEEEEEecCCcccccccccceeeecCccEEEEccC-CCCCCCCe-EEEeCC-CCeEEEEEeeEeCCCeEEEEecC-Cc
Confidence            9999999987632         1  123457777753 11111222 222222 37999996555665 79999999 66


Q ss_pred             eccCCCeeEEeccceeeeE-----EEeeeEEEEeecCCC
Q psy15127        203 IDLESSKSLDLSRRTLGWL-----RVRPLYWNVARPRAN  236 (633)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~-----~~~g~y~C~a~~~~~  236 (633)
                      +............+.+.+.     ...+.|+|.+.|...
T Consensus       159 l~~~~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~  197 (207)
T 1ypz_E          159 IVEFDPAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSE  197 (207)
T ss_dssp             EEECCCEEEECTTSSEEEEECEEESSTTTCEEEEEETTE
T ss_pred             ccCCccceEEcCCCcEEEEEeecccCCCcEEEEEEECCc
Confidence            6432211111112222221     123689999988754

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.40  E-value=1.3e-12  Score=108.39  Aligned_cols=96  Identities=16%  Similarity=0.098  Sum_probs=76.4

Q ss_pred             ceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCccc
Q psy15127        503 ITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTAST  582 (633)
Q Consensus       503 ~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~  582 (633)
                      .+.|.+.+|.+|.++                ++..++.++|.|+|++|      . .+.++.|.+| .|+|+..+...  
T Consensus        10 ~~~t~~~~P~~P~~l----------------~~~~~~~~sv~l~W~~p------~-~~~~g~i~~Y-~v~~~~~~~~~--   63 (120)
T 1x5f_A           10 APATTGPLPSAPRDV----------------VASLVSTRFIKLTWRTP------A-SDPHGDNLTY-SVFYTKEGIAR--   63 (120)
T ss_dssp             CCCCCCCCCCCCEEE----------------EEEEECSSCEEEEEECC------S-SCSSCCSSEE-EEEEEETTCCC--
T ss_pred             EecCCCCCCCCCCCc----------------EEEecCCCEEEEEECCC------C-CCCCCcEEEE-EEEEEECCCCC--
Confidence            366778888877776                78888999999999955      1 1567899999 99999875443  


Q ss_pred             ceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        583 AVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       583 ~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                           |..    ........+.++|.+|+|++.|.|+|+|.|..|.|++|+
T Consensus        64 -----~~~----~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  105 (120)
T 1x5f_A           64 -----ERV----ENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSA  105 (120)
T ss_dssp             -----CEE----EECSSTTCSEEEECSCCTTCEEEEEEEEECSSCEEEECC
T ss_pred             -----ceE----EEeccCCccEEEeCCCCCCCEEEEEEEEECCCccCCCCC
Confidence                 321    112345688999999999999999999999999999885

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.39  E-value=1.8e-12  Score=119.80  Aligned_cols=113  Identities=15%  Similarity=0.136  Sum_probs=80.0

Q ss_pred             CceEEee-----CceEEEcCCCC--CCeEEEEEEecC-------------------cCCeeeeCCCceEEEcCCeEEEEE
Q psy15127         40 RRSRSIF-----GSVLGARGALS--DDQWKLIAKEAL-------------------IKPFPISEPSDATVLSGSVVEFVC   93 (633)
Q Consensus        40 ~~~~~~~-----~~~L~i~~v~~--~G~Y~C~a~~v~-------------------~~p~~~~~~~~~~~~~G~~~~L~C   93 (633)
                      .|+.+..     +.+|.|.+++.  +|.|+|.+.+..                   .+|.+.. +.  .+.+|+.++|.|
T Consensus        69 ~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~--~~~~G~~v~L~C  145 (214)
T 2zg1_A           69 GRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-LE--PLESGRPTRLSC  145 (214)
T ss_dssp             TTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---C--CCCTTCCEEEEE
T ss_pred             CceEEeccCCCCeEEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec-Cc--cccCCCeEEEEE
Confidence            4666543     34799999999  999999998711                   1233322 22  257899999999


Q ss_pred             EEecc----CCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCce--EEEEEEEEE
Q psy15127         94 RVGGD----PLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS--ISLRASLTV  157 (633)
Q Consensus        94 ~~~~~----p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~--~s~~~~l~V  157 (633)
                      .+.+.    |.|.++|+|++..+...+.  ...+.|.|..+..+|+|.|+|.|.|..+.  .++.+.|.|
T Consensus       146 ~~~~~~~~~p~p~v~W~~~~~~~~~~~~--~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V  213 (214)
T 2zg1_A          146 SLPGSCEAGPPLTFSWTGNALSPLDPET--TRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV  213 (214)
T ss_dssp             ECTTCCSCSSCCEEEEESSTTSSSCSSC--CCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred             EeccCCCCCCCceEEEeCCCCccCCCCc--eeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence            99763    7889999999876543321  34578999999999999999999997654  345554443

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A

Probab=99.39  E-value=2.7e-12  Score=120.54  Aligned_cols=146  Identities=16%  Similarity=0.163  Sum_probs=109.4

Q ss_pred             CceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCC
Q psy15127        357 LRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPR  436 (633)
Q Consensus       357 ~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~  436 (633)
                      ..+.+.+|.....|.|++.|.|..|....+..+.+.....            .|.+|..+.+...+.+++.|+|.+|...
T Consensus        58 ~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~~~~~T~~~------------~P~~P~~l~~~~~~~~sv~l~W~~p~~~  125 (234)
T 3f7q_A           58 PSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQE------------VPSEPGRLAFNVVSSTVTQLSWAEPAET  125 (234)
T ss_dssp             SEEEECSCCTTCEEEEEEEEEETTEECCCCCCEEEECCCC------------CCCCCCCCEEEECSSSCEEEECCCCSCC
T ss_pred             cEEEECCCCCCCEEEEEEEEEeCCCcCCCCCeEEEEcCCC------------CCCCCCccEEEEecCCEEEEEEcCCCCC
Confidence            3456779999999999999999988765444444443332            2566788888888999999999998743


Q ss_pred             CCCCcceeEEEEEEEEecCCC----CeEEEEE-eeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCceeecCCCC
Q psy15127        437 GGGVAPVIGYTVEYFSSDLQT----GWVVAAH-RITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNS  511 (633)
Q Consensus       437 ~~~~~~i~~Y~v~~~~~~~~~----~~~~~~~-~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~~p  511 (633)
                         ++.+.+|.|+|+..+...    .|..... ....+.++|.+|.|++.|.|+|+|.|..|.|++|.....++|.+.+|
T Consensus       126 ---~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~~T~~~~P  202 (234)
T 3f7q_A          126 ---NGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRP  202 (234)
T ss_dssp             ---SSCCCEEEEEEEEBCTTSCBSSCCEECCCSCTTCCEEEEECCCTTCCEEEEEEEEETTEECCCEEEEECGGGSCCCC
T ss_pred             ---CCceeEEEEEEEECCCCCCccCcceEEEecCCcceEEEeCCCCCCCeEEEEEEEECCCccCCCcCceeEeecCCCCC
Confidence               578999999999765432    1332211 12346899999999999999999999999999876433467777777


Q ss_pred             CCCcch
Q psy15127        512 LVPQHL  517 (633)
Q Consensus       512 ~~~~~~  517 (633)
                      ..+|..
T Consensus       203 ~~~P~~  208 (234)
T 3f7q_A          203 MSIPII  208 (234)
T ss_dssp             CCCCCC
T ss_pred             CCCccc
Confidence            777765

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.39  E-value=2e-12  Score=121.86  Aligned_cols=134  Identities=16%  Similarity=0.124  Sum_probs=91.6

Q ss_pred             CCCCCcccccccee----eEEEEecc---c---CCCCCceEEee----CceEEEcCCCC--CCeEEEEEEe---------
Q psy15127         13 MSSPRAEIEPATRT----NRVSISGD---P---GFDSRRSRSIF----GSVLGARGALS--DDQWKLIAKE---------   67 (633)
Q Consensus        13 ~~~~~~~i~~~~~~----~~~~~~~~---~---~~~~~~~~~~~----~~~L~i~~v~~--~G~Y~C~a~~---------   67 (633)
                      .+.|.+.|.|+...    ..+.+...   .   .....|+.+..    +.+|.|.+++.  +|.|+|.|.+         
T Consensus        24 ~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~  103 (238)
T 2p1y_A           24 QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQTSVYFCASGDLGQTNERLF  103 (238)
T ss_dssp             ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEC------CEE
T ss_pred             cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccCeeEEEEEEeCCCccccce
Confidence            35567788877641    12221100   0   01134666543    35799999998  9999999985         


Q ss_pred             --------cCcCC------------eeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCc--cC-------------
Q psy15127         68 --------ALIKP------------FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG--KM-------------  112 (633)
Q Consensus        68 --------v~~~p------------~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~--~i-------------  112 (633)
                              +...+            .+...|....+.+|++++|.|.+.+.|.+.+.|+|++.  ..             
T Consensus       104 ~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~  183 (238)
T 2p1y_A          104 FGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKK  183 (238)
T ss_dssp             ECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEE
T ss_pred             eCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcc
Confidence                    11111            45556777789999999999999999899999999642  11             


Q ss_pred             CCCCeEEcc-----cceEEEccCCCCCCeEEEEEEEeCC
Q psy15127        113 PTGRAKILD-----DRSLQIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus       113 ~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      ..+++....     ...|.|.+++.+|+|.|+|.|.|..
T Consensus       184 ~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          184 EDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             EETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             cCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            122333321     2589999999999999999999873

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=6.6e-13  Score=105.76  Aligned_cols=84  Identities=24%  Similarity=0.416  Sum_probs=71.9

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEE
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASL  155 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l  155 (633)
                      ..|..+.+.+|+.++|.|.+.+.| |.++|+|++..+............|.|.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus         8 ~~p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l   86 (99)
T 2cr3_A            8 VEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSV   86 (99)
T ss_dssp             CCEEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEECSSEEEETTCCTTTCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEECCEEEEccCCHHHCEEEEEEEEeCCceEEEEEEE
Confidence            345567789999999999999876 7999999999886654444457899999999999999999999999998888888


Q ss_pred             EEEee
Q psy15127        156 TVHLL  160 (633)
Q Consensus       156 ~V~~~  160 (633)
                      .|...
T Consensus        87 ~V~~~   91 (99)
T 2cr3_A           87 NVSDA   91 (99)
T ss_dssp             CBCSC
T ss_pred             EEecC
Confidence            88765

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.39  E-value=2.3e-12  Score=107.18  Aligned_cols=94  Identities=16%  Similarity=0.135  Sum_probs=70.5

Q ss_pred             eCCCceEEEcCCeEEEEEEEecc--CCCeEEEEeCCccCC------CCCeEE------cccceEEEccCCCCCCeEEEEE
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGD--PLPTILWRRDDGKMP------TGRAKI------LDDRSLQIENVGPQDEGLYICD  141 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~--p~p~i~W~~~~~~i~------~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~  141 (633)
                      ..+..+.+.+|+++.|.|.+.|.  |.+.+.|++++..+.      ......      ...+.|.|.+++.+|+|.|+|.
T Consensus        13 ~p~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   92 (122)
T 3s35_X           13 SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCA   92 (122)
T ss_dssp             ESCSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEE
T ss_pred             cCCCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEE
Confidence            34445689999999999999984  456899999988542      111111      1345899999999999999999


Q ss_pred             EEeCCceEEEEEEEEEEeeccccccCCCc
Q psy15127        142 VENLVGSISLRASLTVHLLRDDFRAEPKD  170 (633)
Q Consensus       142 ~~n~~g~~s~~~~l~V~~~~p~~~~~~~~  170 (633)
                      |.|..|..+..+.|.|..+ |.+.+.|..
T Consensus        93 a~n~~g~~~~~~~l~V~~~-p~i~~~p~~  120 (122)
T 3s35_X           93 ASSGLMTKKNSTFVRVHEK-PFVAFGSGM  120 (122)
T ss_dssp             EECSSCEEEEEEEEEEEEE-ECC------
T ss_pred             EccCCCceEEEEEEEEecc-CeEEeecCC
Confidence            9999999999999999988 777666543

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.38  E-value=1.4e-12  Score=108.20  Aligned_cols=96  Identities=16%  Similarity=0.111  Sum_probs=75.4

Q ss_pred             eeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccc
Q psy15127        504 TRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTA  583 (633)
Q Consensus       504 ~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~  583 (633)
                      ..+...+|.+|..+                .+..++.+++.|.|++|        .++++.|++| .|+|+......   
T Consensus        11 ~~~~~~~P~~P~~~----------------~~~~~~~~sv~l~W~p~--------~~~~~~i~~Y-~v~~~~~~~~~---   62 (121)
T 1x4z_A           11 DHGRLSPPEAPDRP----------------TISTASETSVYVTWIPR--------GNGGFPIQSF-RVEYKKLKKVG---   62 (121)
T ss_dssp             CSSSCCCCCCCCCC----------------EEEECCSSEEEEECCCC--------CCTTSCCCEE-EEEEEESSSCC---
T ss_pred             ccCcCCCCccCCCC----------------EEEEccCCEEEEEEECC--------CCCCCcceEE-EEEEEECCCCC---
Confidence            44455677777766                78888999999999944        4567789999 99999876322   


Q ss_pred             eeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        584 VRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       584 ~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                         .|.....   ......+.++|.+|++++.|.|+|+|.|..|.|++|+
T Consensus        63 ---~w~~~~~---~~~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~  106 (121)
T 1x4z_A           63 ---DWILATS---AIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSA  106 (121)
T ss_dssp             ---CCEEEEE---EECTTCCEEEEESCCTTCEEEEEEEEEETTEECCCCC
T ss_pred             ---ceEEeec---ccCCCcCEEEECCCCCCCEEEEEEEEEcCCCcCCCcC
Confidence               3754321   1245688999999999999999999999999999985

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A

Probab=99.38  E-value=1.4e-12  Score=121.95  Aligned_cols=182  Identities=16%  Similarity=0.145  Sum_probs=109.4

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcc-eeEEEEEEEEecCC---CCeEEEEEe----eeeceEEEecCCCCC
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAP-VIGYTVEYFSSDLQ---TGWVVAAHR----ITSTSITVSDLKPDT  480 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~-i~~Y~v~~~~~~~~---~~~~~~~~~----~~~~~~~i~~L~p~~  480 (633)
                      +|+.|..+.+......++.+.|+++...   +.+ ...|.|.|+..+..   ..+..-...    .....+...+|.+++
T Consensus        29 pP~~P~~l~C~~~~~~~~~c~W~p~~~~---~~~~~~~y~l~Y~~~~~~~~~~~~~~C~~~~~~~~~~C~~~~~~l~~~~  105 (236)
T 1axi_B           29 SSGEPKFTKCRSPERETFSCHWTDEVHH---GTKNEGPIQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAI  105 (236)
T ss_dssp             ---CCCEEEEEBSSSSCEEEEECCC-----------CSCEEEEEECC------CCEECSCSSTTCTTEEEECGGGCCSSS
T ss_pred             CCCCCcCCeEEeCCCCEEEEEecCCCCC---CCCCCceEEEEEEeCCCCcCCCceeeCCCCCCCCCEEEEECCcCCcccc
Confidence            3566777777777889999999986532   222 24688888765432   123221111    122345667899999


Q ss_pred             eEEEEEEEEeccccCCCCCCCCcee-ecCCCCCCCcchHHHHHHHhCCceEEeeeeeeccc----ceEEEEEEEecCCCc
Q psy15127        481 SYMFIVRAENSHGLGIPSPVSPITR-TLGLNSLVPQHLLDEARARLGTKVVNLRELIPTAS----TAVRITWEVSWGSVP  555 (633)
Q Consensus       481 ~Y~~~v~a~n~~G~g~~s~~~~~~~-t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~si~v~W~~p~~~~p  555 (633)
                      .|.|+|.| | .+.+.   .. .+. +....|.+|.++             .+ ++..++.    ..+.|+|++|    +
T Consensus       106 ~Y~~~V~a-N-~~~s~---~~-~~~~~~~v~p~pP~~l-------------~~-~~~~~s~~~~~~~l~lsW~~P----~  161 (236)
T 1axi_B          106 PYCIKLTS-N-GGTVD---EK-CFSVDEIVQPDPPIAL-------------NW-TLLNVSLTGIHADIQVRWEAP----R  161 (236)
T ss_dssp             EEEEEEEE-T-TEEEE---EE-EEEGGGGBCCCCCEEE-------------EE-EECSCCSSCSEEEEEEEEECC----T
T ss_pred             eEEEEEEE-C-CccCC---Ce-EeecccccccCCCccc-------------EE-EEEecccCCCCceEEEEECCC----C
Confidence            99999999 8 33332   22 122 222234444433             00 1223322    4599999954    1


Q ss_pred             ccccchhh-hhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEecccccc--ccccC
Q psy15127        556 QHLLDEAR-ARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTV--EGARL  632 (633)
Q Consensus       556 ~~~~~~~~-~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g--~g~~s  632 (633)
                       .....+| .+..| .|+|+..+...       |+...      ....++++|.+|+|++.|.|+|+|.+..|  -|++|
T Consensus       162 -~~~~~~g~~~l~Y-evry~~~~~~~-------w~~~~------~~~~~~~~l~~L~p~t~Y~vqVRa~~~~gg~ws~WS  226 (236)
T 1axi_B          162 -NADIQKGWMVLEY-ELQYKEVNETK-------WKMMD------PILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFS  226 (236)
T ss_dssp             -TSCTTTTSCCEEE-EEEEEETTCSS-------CEECC------CBSSSEEEEEEEETTSCEEEEEEEEETTSSCCCCCC
T ss_pred             -CccccCCceeeEE-EEEEEECCCCc-------eEEEe------ccCCCEEEEeccCCCCEEEEEEEEEECCCCCcCCCC
Confidence             1112345 68999 99999886543       65332      22468999999999999999999999888  66655

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.38  E-value=1.6e-12  Score=108.22  Aligned_cols=101  Identities=20%  Similarity=0.324  Sum_probs=76.7

Q ss_pred             ceeecCCCCCC-CcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcc
Q psy15127        503 ITRTLGLNSLV-PQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTAS  581 (633)
Q Consensus       503 ~~~t~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~  581 (633)
                      .++|.+..|.. |.++                ++..++.+++.|+|++|      .....+|.|++| .|+|+..+... 
T Consensus         7 ~~~T~~~~P~~~P~~~----------------~~~~~~~~sv~l~W~~p------~~~~~~g~i~~Y-~v~~~~~~~~~-   62 (122)
T 1va9_A            7 GISTEEAAPDGPPMDV----------------TLQPVTSQSIQVTWKAP------KKELQNGVIRGY-QIGYRENSPGS-   62 (122)
T ss_dssp             SSCSSCCCCSSCCEEE----------------EEEECSSSEEEEEEECC------CSSTTCSCCCEE-EEEEEESSTTS-
T ss_pred             EEECCCCCCCCCCcce----------------EEEeccCCEEEEEEeCC------CCcCCCCcEeEE-EEEEEECCCCC-
Confidence            46677777764 4445                78888999999999954      222368899999 99999887543 


Q ss_pred             cceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        582 TAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       582 ~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                            |.......+...+..++++|.+|+|++.|.|+|+|.|..|.|++|+
T Consensus        63 ------~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  108 (122)
T 1va9_A           63 ------NGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSS  108 (122)
T ss_dssp             ------CCSCBCCBCCCCSSEEEEEEESCCSSCCEEEEEEEEETTEECCCCC
T ss_pred             ------CcceEEEEEecCCceeEEEeCCCCCCCEEEEEEEEEcCCCCCCCcc
Confidence                  2222222223345679999999999999999999999999999985

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.38  E-value=6.6e-12  Score=101.23  Aligned_cols=100  Identities=19%  Similarity=0.181  Sum_probs=80.6

Q ss_pred             CCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEE
Q psy15127        408 LFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVR  487 (633)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~  487 (633)
                      ..|++|..+++...+.+++.|+|++|..   ++.+|.+|.|+|+..+  ..|... .....+.++|.+|.|++.|.|+|+
T Consensus         6 ~~P~~P~~~~~~~~s~~sv~l~W~~p~~---~g~~i~~Y~v~~~~~~--~~~~~~-~~~~~~~~~v~~L~p~t~Y~frV~   79 (106)
T 1x4x_A            6 SGPDQCKPPQVTCRSATCAQVNWEVPLS---NGTDVTEYRLEWGGVE--GSMQIC-YCGPGLSYEIKGLSPATTYYCRVQ   79 (106)
T ss_dssp             CSCCCCCCCCCEEEETTEEEEECCCCSC---SSSCCCEEEEEEESST--TSCCEE-EEESCSEEEEESCCSSCEEEEEEE
T ss_pred             CCcCCCCCCEEEEcCCCEEEEEEcCCCC---CCCcceEEEEEEEcCC--CceEEE-EeCCcceEEEcCCCCCCEEEEEEE
Confidence            3577888888888999999999999984   3468999999998754  233222 233567899999999999999999


Q ss_pred             EEeccccCCCCCCCCceeecCCCCCCC
Q psy15127        488 AENSHGLGIPSPVSPITRTLGLNSLVP  514 (633)
Q Consensus       488 a~n~~G~g~~s~~~~~~~t~~~~p~~~  514 (633)
                      |.|..|.|++|... .++|.+.+|.++
T Consensus        80 A~n~~G~g~~S~~v-~~~T~~~~P~~~  105 (106)
T 1x4x_A           80 ALSVVGAGPFSEVV-ACVTPPSSGPSS  105 (106)
T ss_dssp             EECSSCCCCBCCCE-EEECCCCCSCCC
T ss_pred             EEcCCcCCCCcCCE-EEECCCCCcCCC
Confidence            99999999998776 578887777654

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=1.5e-12  Score=106.85  Aligned_cols=90  Identities=19%  Similarity=0.258  Sum_probs=69.6

Q ss_pred             eeecC-CCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCccc
Q psy15127        504 TRTLG-LNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTAST  582 (633)
Q Consensus       504 ~~t~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~  582 (633)
                      ..+.+ ..|.+|.++                ++..++ ++|.|+|++|        ...+|.|++| .|+|+.... .  
T Consensus        10 ~~t~e~~~P~~P~~l----------------~~~~~~-~sv~l~W~~P--------~~~ng~i~gY-~i~y~~~~~-~--   60 (116)
T 2edb_A           10 NDLDESQVPDQPSSL----------------HVRPQT-NCIIMSWTPP--------LNPNIVVRGY-IIGYGVGSP-Y--   60 (116)
T ss_dssp             SSCBCSSCCCCCSCE----------------EEEECS-SCEEEEECCC--------SCTTBCCCEE-EEEEEESST-T--
T ss_pred             ccCCCCCCCCCCCCe----------------EEEECC-CEEEEEEcCC--------CCCCCceeEE-EEEEEeCCC-C--
Confidence            34444 677766666                788888 9999999965        4558899999 999985321 1  


Q ss_pred             ceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccC
Q psy15127        583 AVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       583 ~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s  632 (633)
                            .    .........++++|.+|++++.|.|+|+|.|.+|.|+++
T Consensus        61 ------~----~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~~  100 (116)
T 2edb_A           61 ------A----ETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPL  100 (116)
T ss_dssp             ------S----EEEEEETTCCEEEECSCCSSSBEEEEEEEEETTEECSCE
T ss_pred             ------e----EEEEeCCCeeEEEeCCCCCCCEEEEEEEEEeCCccCCCC
Confidence                  1    122234668999999999999999999999999999975

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.37  E-value=1.4e-11  Score=102.21  Aligned_cols=101  Identities=28%  Similarity=0.378  Sum_probs=82.4

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEe--eeeceEEEecCCCCCeEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHR--ITSTSITVSDLKPDTSYMFIV  486 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~--~~~~~~~i~~L~p~~~Y~~~v  486 (633)
                      .|.+|..+.+...+.+++.|+|.++.   +++.++.+|.|+|+..+....|......  ...+.++|.+|.|++.|.|+|
T Consensus        17 ~P~~P~~~~~~~~~~~sv~l~W~p~~---~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~v~~L~p~t~Y~frV   93 (121)
T 1x4z_A           17 PPEAPDRPTISTASETSVYVTWIPRG---NGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRV   93 (121)
T ss_dssp             CCCCCCCCEEEECCSSEEEEECCCCC---CTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCCTTCEEEEEE
T ss_pred             CCccCCCCEEEEccCCEEEEEEECCC---CCCCcceEEEEEEEECCCCCceEEeecccCCCcCEEEECCCCCCCEEEEEE
Confidence            57788899999999999999999765   3367899999999987645677655433  346889999999999999999


Q ss_pred             EEEeccccCCCCCCCCceeecCCCCC
Q psy15127        487 RAENSHGLGIPSPVSPITRTLGLNSL  512 (633)
Q Consensus       487 ~a~n~~G~g~~s~~~~~~~t~~~~p~  512 (633)
                      +|.|..|.|++|.....+++...+|.
T Consensus        94 ~A~n~~G~s~~S~~~~~v~~~~~~P~  119 (121)
T 1x4z_A           94 RALNMLGESEPSAPSRPYVVSGSGPS  119 (121)
T ss_dssp             EEEETTEECCCCCCCCCEECCSSCCC
T ss_pred             EEEcCCCcCCCcCCCCCEEcCCCCCC
Confidence            99999999999988766767665543

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.37  E-value=1.4e-12  Score=120.23  Aligned_cols=109  Identities=17%  Similarity=0.184  Sum_probs=79.1

Q ss_pred             CceEEeeC---ceEEEcCCCC--CCeEEEEEEe-------------cC---cCCeeeeCCCceEEEcCCeEEEEEEEec-
Q psy15127         40 RRSRSIFG---SVLGARGALS--DDQWKLIAKE-------------AL---IKPFPISEPSDATVLSGSVVEFVCRVGG-   97 (633)
Q Consensus        40 ~~~~~~~~---~~L~i~~v~~--~G~Y~C~a~~-------------v~---~~p~~~~~~~~~~~~~G~~~~L~C~~~~-   97 (633)
                      .|+.+..+   .+|.|.+++.  +|.|+|.|.+             +.   .+|.+...+....+.+|+.++|.|.+.| 
T Consensus        59 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~  138 (210)
T 1lk3_L           59 ARFSGSGSGTDFTLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNF  138 (210)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEE
T ss_pred             ccEEEEecCCEEEEEECCCCHHHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeE
Confidence            46655432   3799999998  9999999987             11   2455554443333447999999999987 


Q ss_pred             cCCC-eEEEEeCCccCCCC-CeE----Eccc------ceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         98 DPLP-TILWRRDDGKMPTG-RAK----ILDD------RSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        98 ~p~p-~i~W~~~~~~i~~~-~~~----~~~~------~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      .|.+ .|.|+|+|..+..+ ...    ...+      +.|.|.++..+|+|.|+|.|.|....
T Consensus       139 ~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (210)
T 1lk3_L          139 YPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSS  201 (210)
T ss_dssp             BSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             eCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCC
Confidence            4554 89999999988655 111    1111      36999999999999999999987653

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.37  E-value=9.2e-13  Score=106.73  Aligned_cols=79  Identities=19%  Similarity=0.172  Sum_probs=65.0

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      .+...+.+++.|+|++|        ...++.|++| .|+|+..+...       |..     +......++++|.+|+|+
T Consensus        14 ~v~~~~~~sv~l~W~~p--------~~~~g~i~~Y-~v~~~~~~~~~-------~~~-----~~~~~~~~~~~i~~L~p~   72 (107)
T 2dn7_A           14 MISTTAMNTALLQWHPP--------KELPGELLGY-RLQYCRADEAR-------PNT-----IDFGKDDQHFTVTGLHKG   72 (107)
T ss_dssp             EEEECSTTEEEEEEECC--------SSCSSCCCEE-EEEEEETTCSS-------CEE-----EEEETTCCEEEEECCCTT
T ss_pred             eEEecCCCEEEEEECCC--------CCCCCceeEE-EEEEEECCCCC-------CEE-----EEeCCCccEEEeCCCCCC
Confidence            56667999999999965        4567899999 99999776543       442     234466789999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|.|..|.|++|+
T Consensus        73 t~Y~~~V~A~n~~G~g~~s~   92 (107)
T 2dn7_A           73 TTYIFRLAAKNRAGLGEEFE   92 (107)
T ss_dssp             CEEEEEEEEEETTEEEEEEE
T ss_pred             CEEEEEEEEEcCCcccCCee
Confidence            99999999999999999873

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.37  E-value=6.4e-13  Score=101.47  Aligned_cols=79  Identities=19%  Similarity=0.370  Sum_probs=62.4

Q ss_pred             CCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCC-eEEccc---ceEEEccCCCCCCeEEEEEEEeCCceEEEE
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR-AKILDD---RSLQIENVGPQDEGLYICDVENLVGSISLR  152 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~-~~~~~~---~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~  152 (633)
                      +..++.+.+|+.+.|.|.+.+ |.|.|+|+|||..|..+. ..+..+   ..|.|.+++.+|+|.|+|.|.|    .+..
T Consensus         2 ~lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~   76 (84)
T 2lu7_A            2 HMTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----DSRI   76 (84)
T ss_dssp             -CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT----TCEE
T ss_pred             CCeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECC----EEEE
Confidence            346788999999999999865 888999999999997653 333332   4799999999999999999844    4566


Q ss_pred             EEEEEEee
Q psy15127        153 ASLTVHLL  160 (633)
Q Consensus       153 ~~l~V~~~  160 (633)
                      +.|.|.+|
T Consensus        77 a~l~V~eP   84 (84)
T 2lu7_A           77 FLVSVEEP   84 (84)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEECC
Confidence            77777653

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=4.2e-13  Score=111.57  Aligned_cols=105  Identities=18%  Similarity=0.179  Sum_probs=80.3

Q ss_pred             ccCCCCCCCCceeecCCCCC-CCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEE
Q psy15127        493 GLGIPSPVSPITRTLGLNSL-VPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVV  571 (633)
Q Consensus       493 G~g~~s~~~~~~~t~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i  571 (633)
                      |.|++|... .++|.+..|. +|.++                ++..++.++|.|+|++|        ...++.|.+| .|
T Consensus         1 G~g~~S~~~-~~~T~~~~P~~~P~~l----------------~~~~~~~~sv~l~W~~p--------~~~~g~i~~Y-~v   54 (121)
T 2dlh_A            1 GSSGSSGPV-LTQTSEQAPSSAPRDV----------------QARMLSSTTILVQWKEP--------EEPNGQIQGY-RV   54 (121)
T ss_dssp             CCCCCCSSS-CSCCCCCCCCSCCEEE----------------EECCCSSSBCCEEEECC--------SCCCSCEEEE-EE
T ss_pred             CCCCCCCCE-EEECCCcCCCCCCccc----------------EEEecCCCEEEEEECCC--------CCCCCcEeEE-EE
Confidence            678888777 4677777665 55545                78888999999999955        4567899999 99


Q ss_pred             EEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        572 NLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       572 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +|+.......    ..|..      ......++++|.+|+|++.|.|+|+|.|..|.|++|+
T Consensus        55 ~~~~~~~~~~----~~~~~------~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  106 (121)
T 2dlh_A           55 YYTMDPTQHV----NNWMK------HNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSS  106 (121)
T ss_dssp             ECCSCTTSCT----TTSCC------CCCSSCSEECCBSCCSSCEEEEEEEEEESSCBCCCCC
T ss_pred             EEEeCCCCCc----cccEE------EecCCceEEEecCCCCCCEEEEEEEEEeCCccCCCCC
Confidence            9987654320    11221      1224578899999999999999999999999999985

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.37  E-value=1.3e-12  Score=103.20  Aligned_cols=84  Identities=26%  Similarity=0.415  Sum_probs=71.9

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEE
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRAS  154 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~  154 (633)
                      +..|....+.+|+.+.|.|.+.+  .|.+.|+|+|..+.........++.|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus         5 ~~~p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~   82 (95)
T 4hwu_A            5 GSQPEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGLYACTAARTVDSETWIFM   82 (95)
T ss_dssp             ---CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             ccCCCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEEeCCEEEECcCCcccCEEEEEEEccCCCcEEEEEE
Confidence            45677788999999999999886  5799999999988766555556789999999999999999999999999888999


Q ss_pred             EEEEee
Q psy15127        155 LTVHLL  160 (633)
Q Consensus       155 l~V~~~  160 (633)
                      |.|..+
T Consensus        83 l~V~~~   88 (95)
T 4hwu_A           83 VNVTDA   88 (95)
T ss_dssp             EEECCC
T ss_pred             EEEeCC
Confidence            998876

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.37  E-value=5.7e-12  Score=103.89  Aligned_cols=103  Identities=39%  Similarity=0.697  Sum_probs=85.5

Q ss_pred             CCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEE
Q psy15127        408 LFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVR  487 (633)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~  487 (633)
                      ..|.+|..+.+.....+++.|+|.++..   ++.++.+|.|+|+..+....|.........+.++|.+|.|++.|.|+|+
T Consensus        14 ~~P~~P~~~~~~~~~~~sv~l~W~~p~~---~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~   90 (117)
T 1uem_A           14 DLPGPPSKPQVTDVTKNSVTLSWQPGTP---GTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVR   90 (117)
T ss_dssp             CSCBCCCCCEEEEECSSCEEEECCCCBC---SSSCCCEEEEEEEETTTEEEEEEEEEEECSSEEEECSCCTTCEEEEEEE
T ss_pred             CCccCCCCCEEEEecCCEEEEEEeCCCC---CCcCceEEEEEEEECCCCCceeEcccccCcCEEEECCCCCCCEEEEEEE
Confidence            4577888999888999999999999882   3678999999999865445676654555678899999999999999999


Q ss_pred             EEeccccCCCCCCCCceeecCCCCCC
Q psy15127        488 AENSHGLGIPSPVSPITRTLGLNSLV  513 (633)
Q Consensus       488 a~n~~G~g~~s~~~~~~~t~~~~p~~  513 (633)
                      |.|..|.|.+|.....++|...+|.+
T Consensus        91 A~n~~G~s~~S~~~~~v~t~~~~P~~  116 (117)
T 1uem_A           91 AINPQGLSDPSPMSDPVRTQDSGPSS  116 (117)
T ss_dssp             EEETTEEEEECCCCCCEECCCSSCCC
T ss_pred             EECCCccCCCcCCCccEEccCCCCCC
Confidence            99999999998887657887776654

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.37  E-value=6.9e-12  Score=101.81  Aligned_cols=102  Identities=26%  Similarity=0.276  Sum_probs=82.0

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRA  488 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a  488 (633)
                      .|.+|..+++...+.+++.|+|.++...+  +.++.+|.|+|+..+....|... .......++|.+|.|++.|.|+|+|
T Consensus         7 ~P~~P~~p~~~~~~~~sv~l~W~~p~~~~--~~~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~v~~L~p~t~Y~frV~A   83 (109)
T 1x5x_A            7 GPSMPASPVLTKAGITWLSLQWSKPSGTP--SDEGISYILEMEEETSGYGFKPK-YDGEDLAYTVKNLRRSTKYKFKVIA   83 (109)
T ss_dssp             CCCCCCCCEEEEECSSEEEEECCCCSSCC--SSSSCEEEEEECCSSSSCCCEEE-EEESCSEEEEESCCSSCEEEEEEEE
T ss_pred             CCcCCCCCEEEEccCCEEEEEEcCCCCCC--CCcccEEEEEEecCCCCcceEEe-EeCCccEEEECCCCCCCEEEEEEEE
Confidence            46778888888899999999999998653  34899999999987654456543 2334678999999999999999999


Q ss_pred             EeccccCCCCCCCCceeecCCCCCCC
Q psy15127        489 ENSHGLGIPSPVSPITRTLGLNSLVP  514 (633)
Q Consensus       489 ~n~~G~g~~s~~~~~~~t~~~~p~~~  514 (633)
                      .|..|.|.+|... .+.|...+|..|
T Consensus        84 ~n~~G~s~~S~~~-~~~T~~~~P~~p  108 (109)
T 1x5x_A           84 YNSEGKSNPSEVV-EFTTCPDSGPSS  108 (109)
T ss_dssp             ECSSCEEEECCCE-EEECCCCCCCCC
T ss_pred             EeCCCCcCCccCE-EeEeCCCCCCCC
Confidence            9999999988776 467777766654

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.37  E-value=1.1e-12  Score=108.12  Aligned_cols=99  Identities=20%  Similarity=0.256  Sum_probs=77.2

Q ss_pred             CCCCCCCCceeec--CCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEE
Q psy15127        495 GIPSPVSPITRTL--GLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVN  572 (633)
Q Consensus       495 g~~s~~~~~~~t~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~  572 (633)
                      |++|... .++|.  ..+|.+|.++                ++..++.++|.|+|++|        ...++.+.+| .|+
T Consensus         1 G~~S~~~-~~~T~~~~~~P~~P~~l----------------~~~~~~~~si~l~W~~p--------~~~~~~i~~Y-~v~   54 (116)
T 1x5g_A            1 GSSGSSG-RVETQPEVQLPGPAPNL----------------RAYAASPTSITVTWETP--------VSGNGEIQNY-KLY   54 (116)
T ss_dssp             CCCCCCC-CCSSCCCSSCCCCCSSC----------------EEEEEETTEEEEECCCC--------SCCSSCCSEE-EEE
T ss_pred             CCCccCe-EEEcCCCCCCCcCCCcc----------------EEEecCCCEEEEEEeCC--------CCCCCcccEE-EEE
Confidence            4556555 35663  3577777766                78888999999999965        3467899999 999


Q ss_pred             EEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        573 LRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       573 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      |+..+...       |..     +  ....++++|.+|++++.|.|+|+|.|..|.|++|+
T Consensus        55 ~~~~~~~~-------~~~-----~--~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  101 (116)
T 1x5g_A           55 YMEKGTDK-------EQD-----V--DVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTP  101 (116)
T ss_dssp             EEETTCCC-------CCC-----E--EECSSEEEECSCCTTCEEEEEEEEECSSCCCCBCC
T ss_pred             EEECCCCc-------cEE-----E--ecCCceEEEcCCCCCCEEEEEEEEEcCCCcCCCCC
Confidence            99876543       321     1  12478999999999999999999999999999985

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1

Probab=99.36  E-value=1.5e-12  Score=106.24  Aligned_cols=84  Identities=14%  Similarity=0.248  Sum_probs=61.2

Q ss_pred             eeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEe-------ecCCccceEEe
Q psy15127        535 LIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATV-------MNAATTTSYTV  607 (633)
Q Consensus       535 ~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~-------~~~~~~~~~~i  607 (633)
                      +..++.++++|+|.+|        .+.++.|++| .|+|++.+...      .|...+....       ...+..++++|
T Consensus        11 v~~~~~~sv~L~W~~P--------~~~G~pI~~Y-~Ve~r~~~~~~------~w~~~~~~~~~~~~~~~~~~~~~~~~~v   75 (115)
T 2ic2_A           11 VTRLSDESVMLRWMVP--------RNDGLPIVIF-KVQYRMVGKRK------NWQTTNDNIPYGKPKWNSELGKSFTASV   75 (115)
T ss_dssp             EEECC---EEEEEEEE--------CCSSCCEEEE-EEEEEECC---------CCEEEEEEEECCSCSCSSSSEEEEEEEE
T ss_pred             eEEEeCCEEEEEEcCC--------CCCCCCCceE-EEEEEECCCCC------CceECcccccccccccccccCceeEEEe
Confidence            5567899999999976        4556889999 99999873222      4875543221       11234578999


Q ss_pred             eccccceeEEEEEeccccccccccCC
Q psy15127        608 THLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       608 ~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      .+|+|++.|.|||+|.|..|.|.||+
T Consensus        76 ~~L~p~t~Y~FRV~A~N~~G~~~pS~  101 (115)
T 2ic2_A           76 TDLKPQHTYRFRILAVYSNNDNKESN  101 (115)
T ss_dssp             CSCCSSEEEEEEEEEEETTSCEEECC
T ss_pred             CCCCCCCEEEEEEEEEeCCCCCCCCC
Confidence            99999999999999999999988874

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.36  E-value=1e-12  Score=108.12  Aligned_cols=100  Identities=16%  Similarity=0.099  Sum_probs=79.3

Q ss_pred             ccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEE
Q psy15127        493 GLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVN  572 (633)
Q Consensus       493 G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~  572 (633)
                      |.|+.|... .++|.+..|.+|.++                ++..++.++|.|+|++|        .+  +.+.+| .|+
T Consensus         1 G~g~~S~~~-~~~t~~~~P~~P~~l----------------~~~~~~~~sv~l~W~~p--------~~--~~i~~Y-~v~   52 (115)
T 1x5z_A            1 GSSGSSGDI-QVITQTGVPGQPLNF----------------KAEPESETSILLSWTPP--------RS--DTIANY-ELV   52 (115)
T ss_dssp             CCCCCCCCC-CCCCCSCCCCCCEEE----------------EEECSSSSEEEEEEECC--------SC--CCCCEE-EEC
T ss_pred             CCCCCCCCE-EEECCCCCCCCCccC----------------EeeeCCCCEEEEEEcCC--------CC--CCccEE-EEE
Confidence            677777766 477878888877666                78888999999999954        22  389999 999


Q ss_pred             EEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        573 LRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       573 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      |+..+...       |..     + .....+.++|.+|++++.|.|+|+|.|..|.|++|+
T Consensus        53 ~~~~~~~~-------~~~-----~-~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  100 (115)
T 1x5z_A           53 YKDGEHGE-------EQR-----I-TIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTA  100 (115)
T ss_dssp             BEESSSCC-------CBC-----C-EECSSSEEEEECCCTTCEEEECEEEECSSCEEEECC
T ss_pred             EEeCCCCC-------ceE-----E-ecCCCcEEEECCCCCCCeEEEEEEEECCCcccCCCc
Confidence            99876543       321     1 123468999999999999999999999999999985

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.36  E-value=8e-13  Score=110.14  Aligned_cols=97  Identities=14%  Similarity=0.097  Sum_probs=73.6

Q ss_pred             ecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCccccee
Q psy15127        506 TLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVR  585 (633)
Q Consensus       506 t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~  585 (633)
                      +...+|.+|.++                ++..++.++|.|+|.+|        .++++.|++| .|+|+......    .
T Consensus        13 ~~~~~P~~P~~l----------------~~~~~~~~sv~l~W~p~--------~~~~~~i~~Y-~v~~~~~~~~~----~   63 (124)
T 1wis_A           13 VPPELPGPPTNL----------------GISNIGPRSVTLQFRPG--------YDGKTSISRW-LVEAQVGVVGE----G   63 (124)
T ss_dssp             CCCCCCCCCEEE----------------EEESCCSSCEEEEEECC--------CCCSSCCSEE-EEEECBSCCST----T
T ss_pred             CCCCCCccCCCC----------------EEEEecCCEEEEEEECC--------CCCCCcccEE-EEEEEECCCCC----C
Confidence            345667777666                78888999999999854        4667889999 99998742111    1


Q ss_pred             eeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        586 ITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       586 ~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      ..|......  ......+.++|.+|+|++.|.|+|+|.|..|.|++|+
T Consensus        64 ~~w~~~~~~--~~~~~~~~~~v~~L~p~t~Y~frV~A~N~~G~s~~S~  109 (124)
T 1wis_A           64 EEWLLIHQL--SNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQ  109 (124)
T ss_dssp             SCCEEEEEE--ESCTTCSEEEECSCCTTSEECCCCEEECSSCBCCCCC
T ss_pred             CCCeEeeeE--ccCCCceEEEeCCCCCCCEEEEEEEEEECCccCCCcC
Confidence            247543221  1245688999999999999999999999999999985

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}

Probab=99.36  E-value=4e-11  Score=109.18  Aligned_cols=176  Identities=16%  Similarity=0.110  Sum_probs=123.6

Q ss_pred             CCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEE----ecCCCCeEE--EEEeeeeceEEEec-CCCCCeEE
Q psy15127        411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFS----SDLQTGWVV--AAHRITSTSITVSD-LKPDTSYM  483 (633)
Q Consensus       411 ~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~----~~~~~~~~~--~~~~~~~~~~~i~~-L~p~~~Y~  483 (633)
                      .+|.++.+...+-. ..|.|+++...    .....|.|+|+.    ......|..  .+..+..+.+.|++ |..+..|.
T Consensus         8 p~P~nv~~~s~n~~-~iL~W~p~~~~----~~~~~Y~V~y~~~~~~~~~~~~W~~~~~C~~i~~~~Cdlt~~~~~~~~Y~   82 (206)
T 4doh_B            8 PAPQQLSVLSTNMK-HLLMWSPVIAP----GETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVTDDITATVPYN   82 (206)
T ss_dssp             CCCCCCEEEEETTE-EEEECCCCCCS----SSCCEEEEEEEEHHHHHHSTTCCEEEEEEEEESSSEEECTTTCCSSSCEE
T ss_pred             CCCCeeEEEEeCCE-EEEEECCCCCC----CCCEEEEEEEEEeccccCCCccceecccccCCCCCEEcCCccccCCCCEE
Confidence            45888888877655 79999999632    244789999995    123467875  45566778888884 77889999


Q ss_pred             EEEEEEeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhh
Q psy15127        484 FIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEAR  563 (633)
Q Consensus       484 ~~v~a~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~  563 (633)
                      +||+|.++.+.+.++.... +......-..||.+                .+. ....+|.|.|.+|            +
T Consensus        83 ~RVrA~~~~~~S~w~~~~~-f~~~~~t~i~PP~v----------------~v~-~~~~~i~V~~~~p------------~  132 (206)
T 4doh_B           83 LRVRATLGSQTSAWSILKH-PFNRQSTILTRPGM----------------EIT-KDGFHLVIELEDL------------G  132 (206)
T ss_dssp             EEEEEEETTEECCCEECSS-CBCGGGCBCCCCCE----------------EEE-EETTEEEEEECCC------------C
T ss_pred             EEEEEEcCCCccCcccccc-ccchhhcccCCCeE----------------EEE-eCCCEEEEEecCC------------C
Confidence            9999999999998865442 22222222223333                444 3688999999932            6


Q ss_pred             hhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccc--cccccCC
Q psy15127        564 ARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKT--VEGARLD  633 (633)
Q Consensus       564 ~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~--g~g~~s~  633 (633)
                      .+..| .|.|.+.+....         . ...+ .......++|.+|+|++.|.|+|+|....  |.|.+|.
T Consensus       133 ~~l~Y-~v~y~~~~~~~~---------~-~~~~-~~~~~~~~~i~~L~p~t~Ycv~Vra~~~~~~~~g~~S~  192 (206)
T 4doh_B          133 PQFEF-LVAYWRREPGAE---------E-HVKM-VRSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQ  192 (206)
T ss_dssp             TTCEE-EEEEEESSSSCC---------C-EEEE-ECCSSSEEEEEECCSSSCEEEEEEEEEGGGTEECCCCC
T ss_pred             CcEEE-EEEEEEcCCCce---------e-EEeE-EccCCeEEEEeCCCCCCcEEEEEEEEecCCCCCCCCCC
Confidence            78899 899988766541         0 0111 12335789999999999999999999864  7888774

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.36  E-value=4.9e-12  Score=104.42  Aligned_cols=101  Identities=21%  Similarity=0.275  Sum_probs=83.3

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRA  488 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a  488 (633)
                      .|.+|..+.+.....+++.|+|.++..   ++.++.+|.|+|+..+....|... .......++|.+|.|++.|.|+|+|
T Consensus        17 ~P~~P~~~~~~~~~~~sv~l~W~~p~~---~~~~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~v~~L~p~t~Y~frV~A   92 (118)
T 1x3d_A           17 EPDIPNPPRIANRTKNSLTLQWKAPSD---NGSKIQNFVLEWDEGKGNGEFCQC-YMGSQKQFKITKLSPAMGCKFRLSA   92 (118)
T ss_dssp             CCCCCCCCEEEEEETTEEEEECCCCCC---CSSCEEEEEEEECTTTSSSCCEEE-EEESCSEEEEESCCTTCEEEEECCE
T ss_pred             CCcCCCCcEEeccCCCEEEEEECCCCC---CCCcceEEEEEEecCCCCCCeEEe-eccCCcEEEeCCCCCCCEEEEEEEE
Confidence            467888899999999999999999983   357899999999876544567644 3335688999999999999999999


Q ss_pred             EeccccCCCCCCCCceeecCCCCCCC
Q psy15127        489 ENSHGLGIPSPVSPITRTLGLNSLVP  514 (633)
Q Consensus       489 ~n~~G~g~~s~~~~~~~t~~~~p~~~  514 (633)
                      .|..|.|.+|... .+.|.+.+|..|
T Consensus        93 ~n~~G~s~~S~~~-~~~T~~~~P~~P  117 (118)
T 1x3d_A           93 RNDYGTSGFSEEV-LYYTSGCSGPSS  117 (118)
T ss_dssp             EESSCBCCCCCCE-EEECSCCCCCCC
T ss_pred             EECCCCCCCccCE-EEEcCCCCCccC
Confidence            9999999999877 467877777655

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.36  E-value=4.5e-12  Score=100.74  Aligned_cols=83  Identities=29%  Similarity=0.477  Sum_probs=69.1

Q ss_pred             eeCCCceEEEcCCeEEEEEEEe-ccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEE
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRA  153 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~-~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~  153 (633)
                      ...+....+.+|++++|.|.+. +.|.+.+.|+|++....... ....++.|.|.+++.+|+|.|+|.|.|..|..+..+
T Consensus        14 ~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~   92 (98)
T 1gl4_B           14 VEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR-AMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTA   92 (98)
T ss_dssp             ECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT-EEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             EeCCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCce-eecCCCEEEEeCCChhhCEEEEEEecCCCCccccEE
Confidence            3445677899999999999998 68999999999865544333 334567999999999999999999999999988888


Q ss_pred             EEEEE
Q psy15127        154 SLTVH  158 (633)
Q Consensus       154 ~l~V~  158 (633)
                      .|.|.
T Consensus        93 ~l~V~   97 (98)
T 1gl4_B           93 TLHVQ   97 (98)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            88875

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.36  E-value=8.9e-13  Score=107.60  Aligned_cols=93  Identities=17%  Similarity=0.077  Sum_probs=74.3

Q ss_pred             eeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccc
Q psy15127        504 TRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTA  583 (633)
Q Consensus       504 ~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~  583 (633)
                      ++|.+.+|.+|.++                .+..++.+++.|.|++|        ...++.|++| .|+|+..+....  
T Consensus         4 ~~T~~~~P~~P~~l----------------~~~~~~~~sv~l~W~~p--------~~~~g~i~~Y-~v~~~~~~~~~~--   56 (111)
T 1x5l_A            4 GSSGQAAPSQVVVI----------------RQERAGQTSVSLLWQEP--------EQPNGIILEY-EIKYYEKDKEMQ--   56 (111)
T ss_dssp             CCCSCCCCCCCCCE----------------ECSCBCSSCEEEEECCC--------SCCCSCCCEE-EEEEEESSSCCS--
T ss_pred             EEcCCCCCCCCceE----------------EEEEcCCCEEEEEECCC--------CCCCCEEEEE-EEEEEECCCCce--
Confidence            56777788887776                78888999999999965        4567889999 999998754320  


Q ss_pred             eeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        584 VRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       584 ~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                         .|.     .  .....+.++|.+|+|++.|.|+|+|.|..|.|++|+
T Consensus        57 ---~~~-----~--~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~   96 (111)
T 1x5l_A           57 ---SYS-----T--LKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQ   96 (111)
T ss_dssp             ---SCE-----E--EEESSSEEEECSCCTTCEEEECEEEEETTEECCCCC
T ss_pred             ---eEE-----E--ecCCCCEEEEcCCCCCCEEEEEEEEEeCCcCCCCcc
Confidence               111     1  234578999999999999999999999999999985

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=7.4e-13  Score=109.45  Aligned_cols=94  Identities=19%  Similarity=0.177  Sum_probs=75.4

Q ss_pred             ceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCccc
Q psy15127        503 ITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTAST  582 (633)
Q Consensus       503 ~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~  582 (633)
                      .++|.+..|.+|.++                .+..++.++|.|+|++|        .. .|.|++| .|+|+..+...  
T Consensus        10 ~~~t~~~~P~~P~~l----------------~~~~~~~~sv~l~W~~p--------~~-~g~i~~Y-~v~~~~~~~~~--   61 (118)
T 2yrz_A           10 DSRLTAGVPDTPTRL----------------VFSALGPTSLRVSWQEP--------RC-ERPLQGY-SVEYQLLNGGE--   61 (118)
T ss_dssp             TTSSSCSCCCCCCCC----------------EECCCBTTEEEEECCCC--------CC-SSCEEEE-EEEEEBSSSCC--
T ss_pred             eeecCCCCCCCCCce----------------EEEeCCCCEEEEEeCCC--------CC-CCCccEE-EEEEEECCCCc--
Confidence            467788888888877                78889999999999965        22 2699999 99998876543  


Q ss_pred             ceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        583 AVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       583 ~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                           |....    ......+.++|.+|+|++.|.|+|+|.|..|.|++|+
T Consensus        62 -----~~~~~----~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  103 (118)
T 2yrz_A           62 -----LHRLN----IPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGRERE  103 (118)
T ss_dssp             -----EEEEE----ESCTTCCEEEEESCCTTCEEEEEEEEEESSCEEEEEE
T ss_pred             -----eEEEE----cCCCCcCEEEeCCCCCCCEEEEEEEEEcCCcCCCCcC
Confidence                 43221    1235688999999999999999999999999999874

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.35  E-value=2.5e-12  Score=106.07  Aligned_cols=93  Identities=31%  Similarity=0.503  Sum_probs=73.6

Q ss_pred             cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC------CeEEcccceEEEc-----cCCCCCCe
Q psy15127         68 ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG------RAKILDDRSLQIE-----NVGPQDEG  136 (633)
Q Consensus        68 v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~------~~~~~~~~~L~i~-----~v~~~d~G  136 (633)
                      +..+|.|...|....+.+|+.++|.|.+.|.|.|.++|+|++..+...      ......++.+.+.     +++.+|+|
T Consensus         6 ~~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G   85 (117)
T 2v9t_A            6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEG   85 (117)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCE
T ss_pred             ccCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCE
Confidence            356789999999999999999999999999999999999999887543      2334445555554     45799999


Q ss_pred             EEEEEEEeCCceE-EEEEEEEEEee
Q psy15127        137 LYICDVENLVGSI-SLRASLTVHLL  160 (633)
Q Consensus       137 ~Y~C~~~n~~g~~-s~~~~l~V~~~  160 (633)
                      .|+|.|.|..|.. +..+.|.+..+
T Consensus        86 ~Y~C~a~N~~G~~~s~~~~l~~~~~  110 (117)
T 2v9t_A           86 VYVCVARNYLGEAVSHDASLEVAAA  110 (117)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEC--
T ss_pred             EEEEEEEeCccceEeeeEEEEhhhh
Confidence            9999999999985 55666776654

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*

Probab=99.35  E-value=2.1e-12  Score=130.14  Aligned_cols=179  Identities=10%  Similarity=0.058  Sum_probs=91.3

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCC--eEEEEEe-eeeceEEEe--cCCCCCeEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTG--WVVAAHR-ITSTSITVS--DLKPDTSYM  483 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~--~~~~~~~-~~~~~~~i~--~L~p~~~Y~  483 (633)
                      ++.+|.++.+...+...+.++|+++...    +....|.|.|+..+....  +...... .......+.  ++.+++.|.
T Consensus       136 P~~~P~nl~C~~~~~~~l~csW~p~~~~----~~~~~Y~l~y~~~~~~~~~~C~~~~~~~g~~~~C~~~~~~~~~~~~Y~  211 (380)
T 3lb6_C          136 PETXVQDMDCVYYNWQYLLCSWKPGIGV----LLDTNYNLFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDFY  211 (380)
T ss_dssp             TTSSCEEEEEEEETTTEEEEEEECC----------CCEEEEEECTTCSSCEECSEEEEC--CEEEEECCCCTTCSSSCEE
T ss_pred             CCCCCcEeEEEECCCcEEEEEEcCCCCC----CCCccEEEEEEECCCCccccCCCccccCCceEEEEeCCCcccceeEEE
Confidence            4567888888888899999999998742    356789999987653221  1111111 122245554  568899999


Q ss_pred             EEEEEEeccccCCCCCCCCceeecCC-CCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchh
Q psy15127        484 FIVRAENSHGLGIPSPVSPITRTLGL-NSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEA  562 (633)
Q Consensus       484 ~~v~a~n~~G~g~~s~~~~~~~t~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~  562 (633)
                      |+|.|.|..|.+..+..  .+.+... .|.+|.++                ++...+++++.|+|++|      .. ..+
T Consensus       212 i~V~a~n~~G~~~s~~~--~~~~~~~v~p~pP~~l----------------~v~~~~~~~l~l~W~~P------~~-~~~  266 (380)
T 3lb6_C          212 ICVNGSSENKPIRSSYF--TFQLQNIVKPLPPVYL----------------TFTRESSCEIKLKWSIP------LG-PIP  266 (380)
T ss_dssp             EEEEEC-----CCCEEE--EECGGGSCCCCCCEEE----------------EEC-------CEEEECC------SS-SCC
T ss_pred             EEEEEEcCCeeeccccE--EEcHHHcccCCCCceE----------------EEEEcCCCeEEEEECCC------CC-CCC
Confidence            99999999998764322  2444443 45555454                66667788999999954      11 123


Q ss_pred             hhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeec-cccceeEEEEEecccc---ccccccCC
Q psy15127        563 RARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTH-LRKFTKYEFFLVPFFK---TVEGARLD  633 (633)
Q Consensus       563 ~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~-L~~~t~Y~~~v~a~n~---~g~g~~s~  633 (633)
                      +.+.+| .++|++.+ .       .|+....        ..++.|.+ |+|++.|.|+|+|...   .+.|.+|+
T Consensus       267 ~~~l~Y-ev~y~~~~-~-------~w~~~~~--------~~~~~l~~~L~p~t~Y~~qVRa~~~~~~~~~g~WSe  324 (380)
T 3lb6_C          267 ARCFDY-EIEIREDD-T-------TLVTATV--------ENETYTLKTTNETRQLCFVVRSKVNIYCSDDGIWSE  324 (380)
T ss_dssp             STTEEE-EECC----------------CCEE--------SSSCC------------CCEEEEECTTTCSSCCCCC
T ss_pred             cceEEE-EEEEEeCC-C-------CceEecc--------cceEEEeCccCCCcEEEEEEEEEEcccCCCCCCCCC
Confidence            578999 99998842 2       3653321        12578889 9999999999999955   34455543

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.35  E-value=1.2e-12  Score=109.35  Aligned_cols=104  Identities=12%  Similarity=0.073  Sum_probs=77.2

Q ss_pred             ceeecCCCCCCCc-chHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcc
Q psy15127        503 ITRTLGLNSLVPQ-HLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTAS  581 (633)
Q Consensus       503 ~~~t~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~  581 (633)
                      .++|.+..|..+| ++                ++..+++++|.|+|++|      .....+|.|++| .|+|+.......
T Consensus         6 ~~~T~~~~P~~~P~~l----------------~~~~~~~~sv~l~W~~p------~~~~~~g~i~gY-~v~~~~~~~~~~   62 (125)
T 1uen_A            6 SGHSGEDLPMVAPGNV----------------RVNVVNSTLAEVHWDPV------PLKSIRGHLQGY-RIYYWKTQSSSK   62 (125)
T ss_dssp             CCCSCCCCCCCCCSSC----------------EEEEEETTEEEEECCCC------CHHHHCSCEEEE-EEEEEEESCCCC
T ss_pred             EEECCCCCCCCCCcee----------------EEEecCCcEEEEEEcCC------CchhcCceEeEE-EEEEEECCCCcc
Confidence            4677777775444 55                78888999999999943      223467899999 999988765431


Q ss_pred             cceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        582 TAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       582 ~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                          ..|.......+...+..++++|.+|+|++.|.|+|+|+|..|.|++|+
T Consensus        63 ----~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  110 (125)
T 1uen_A           63 ----RNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASP  110 (125)
T ss_dssp             ----STTCCCCEEEEEEESSCSEEEEESCCSSCEEEEEEEEEESSCEEEECC
T ss_pred             ----cccccccceEEEecCCccEEEeCCCCCCCEEEEEEEEecCCCCCCCCC
Confidence                112211122333456789999999999999999999999999999985

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.35  E-value=1.1e-12  Score=110.80  Aligned_cols=106  Identities=19%  Similarity=0.162  Sum_probs=82.7

Q ss_pred             ccCCCCCCCCceeecCCCCCCCc-chHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEE
Q psy15127        493 GLGIPSPVSPITRTLGLNSLVPQ-HLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVV  571 (633)
Q Consensus       493 G~g~~s~~~~~~~t~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i  571 (633)
                      |.|++|... .++|.+..|..+| ++                ++..++.++|.|+|++|      .....++.|.+| .|
T Consensus         1 G~g~~S~~~-~~~T~~~~P~~~P~~l----------------~~~~~~~~sv~l~W~~p------~~~~~~g~i~~Y-~v   56 (132)
T 1x5h_A            1 GSSGSSGDV-AVRTLSDVPSAAPQNL----------------SLEVRNSKSIMIHWQPP------APATQNGQITGY-KI   56 (132)
T ss_dssp             CCCCCCCCC-CCCCCCSSCCCCCEEE----------------EEECCSSSEEEEEEECC------CTTTCCSCEEEE-BC
T ss_pred             CcCCCCCCE-EEeCCCCCCCCCCeee----------------EEEeCCCCEEEEEEeCC------CCcCCCceEeEE-EE
Confidence            678888776 5778888887555 45                78888999999999954      222268899999 99


Q ss_pred             EEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        572 NLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       572 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +|+..+...       |..    .+......++++|.+|++++.|.|+|+|.|..|.|++|+
T Consensus        57 ~~~~~~~~~-------~~~----~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  107 (132)
T 1x5h_A           57 RYRKASRKS-------DVT----ETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATD  107 (132)
T ss_dssp             EEEETTEEE-------EEE----CCBCCTTCCEEEEECCCSSCEEEEECEEEETTEEEEECC
T ss_pred             EEEECCCCC-------ccE----EEEeCCCccEEEeCCCCCCCEEEEEEEEEcCCccCCCCc
Confidence            998865432       221    122456789999999999999999999999999999985

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.35  E-value=1e-12  Score=106.04  Aligned_cols=89  Identities=12%  Similarity=0.097  Sum_probs=68.8

Q ss_pred             ecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCccccee
Q psy15127        506 TLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVR  585 (633)
Q Consensus       506 t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~  585 (633)
                      |...+|.+|..+                ++..+++++|.|+|++|        .+.++.|++| .|+|+.....      
T Consensus         3 t~~~~P~~P~~~----------------~~~~~s~~sv~l~W~~p--------~~~g~~i~~Y-~v~~~~~~~~------   51 (106)
T 1x4x_A            3 SGSSGPDQCKPP----------------QVTCRSATCAQVNWEVP--------LSNGTDVTEY-RLEWGGVEGS------   51 (106)
T ss_dssp             SSCCSCCCCCCC----------------CCEEEETTEEEEECCCC--------SCSSSCCCEE-EEEEESSTTS------
T ss_pred             CCCCCcCCCCCC----------------EEEEcCCCEEEEEEcCC--------CCCCCcceEE-EEEEEcCCCc------
Confidence            345566666666                78888999999999965        3344589999 9999876422      


Q ss_pred             eeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        586 ITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       586 ~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                        |..     + ..+..++++|.+|+|++.|.|+|+|.|..|.|++|+
T Consensus        52 --~~~-----~-~~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~g~~S~   91 (106)
T 1x4x_A           52 --MQI-----C-YCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSE   91 (106)
T ss_dssp             --CCE-----E-EEESCSEEEEESCCSSCEEEEEEEEECSSCCCCBCC
T ss_pred             --eEE-----E-EeCCcceEEEcCCCCCCEEEEEEEEEcCCcCCCCcC
Confidence              211     1 123568999999999999999999999999999985

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.35  E-value=5e-13  Score=123.36  Aligned_cols=114  Identities=15%  Similarity=0.181  Sum_probs=83.5

Q ss_pred             CceEEee---CceEEEcCCCC--CCeEEEEEEe--------------cC----cCCeeeeCCCceEEEcCCeEEEEEEEe
Q psy15127         40 RRSRSIF---GSVLGARGALS--DDQWKLIAKE--------------AL----IKPFPISEPSDATVLSGSVVEFVCRVG   96 (633)
Q Consensus        40 ~~~~~~~---~~~L~i~~v~~--~G~Y~C~a~~--------------v~----~~p~~~~~~~~~~~~~G~~~~L~C~~~   96 (633)
                      .|+.+..   +++|.|.+++.  +|.|+|.|.+              +.    .+|.+...+....+.+|+.++|.|.+.
T Consensus        57 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~  136 (211)
T 3tv3_L           57 DRFSGSKSGNTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLIS  136 (211)
T ss_dssp             TTEEEEEETTEEEEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEE
T ss_pred             CcEEEEccCCEEEEEECCCChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEee
Confidence            4555332   35799999998  9999999987              22    456665555554445799999999998


Q ss_pred             cc--CCCeEEEEeCCccCCCCCe----EEc------ccceEEEccCCCCCCeEEEEEEEeCCceEEEEE
Q psy15127         97 GD--PLPTILWRRDDGKMPTGRA----KIL------DDRSLQIENVGPQDEGLYICDVENLVGSISLRA  153 (633)
Q Consensus        97 ~~--p~p~i~W~~~~~~i~~~~~----~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~  153 (633)
                      +.  |.+.+.|+|+|..+..+..    ...      ....|.|.++..+|+|.|+|.|.|..+...+.+
T Consensus       137 g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~  205 (211)
T 3tv3_L          137 DFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  205 (211)
T ss_dssp             EEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEE
T ss_pred             eecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeec
Confidence            75  3578999999998754211    111      124699999999999999999999887655544

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.35  E-value=3.5e-12  Score=121.47  Aligned_cols=121  Identities=15%  Similarity=0.133  Sum_probs=88.1

Q ss_pred             CceEEeeC-----ceEEEcCCCC--CCeEEEEEEec-----------------CcCCeeeeCCCceEEEcCCeEEEEEEE
Q psy15127         40 RRSRSIFG-----SVLGARGALS--DDQWKLIAKEA-----------------LIKPFPISEPSDATVLSGSVVEFVCRV   95 (633)
Q Consensus        40 ~~~~~~~~-----~~L~i~~v~~--~G~Y~C~a~~v-----------------~~~p~~~~~~~~~~~~~G~~~~L~C~~   95 (633)
                      .|+.+..+     .+|.|.+++.  +|.|+|.+.+.                 ..+|.+...|..+.+.+|++++|.|.+
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~  145 (256)
T 1nqb_A           66 SKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRS  145 (256)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEE
T ss_pred             CeEEEEEecCCCEEEEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEe
Confidence            56666542     4799999998  99999999872                 223455566777789999999999999


Q ss_pred             eccCCC-----eEEEEe--CCccCC-------------CCCeEEc---ccceEEEccCCCCCCeEEEEEEEeCCce-EEE
Q psy15127         96 GGDPLP-----TILWRR--DDGKMP-------------TGRAKIL---DDRSLQIENVGPQDEGLYICDVENLVGS-ISL  151 (633)
Q Consensus        96 ~~~p~p-----~i~W~~--~~~~i~-------------~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~s~  151 (633)
                      .+.|.+     .+.|+|  ++..+.             ..++...   ....|+|.+++.+|+|.|+|.|.+.... ...
T Consensus       146 ~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~  225 (256)
T 1nqb_A          146 SQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGG  225 (256)
T ss_dssp             SSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECC
T ss_pred             cCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECC
Confidence            988765     899999  555431             1233322   2357999999999999999999875332 344


Q ss_pred             EEEEEEEee
Q psy15127        152 RASLTVHLL  160 (633)
Q Consensus       152 ~~~l~V~~~  160 (633)
                      ...|.|..+
T Consensus       226 gt~l~V~~~  234 (256)
T 1nqb_A          226 GTKLEIKRA  234 (256)
T ss_dssp             CEEEEECC-
T ss_pred             CEEEEEECC
Confidence            556777655

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.34  E-value=1.1e-13  Score=127.94  Aligned_cols=165  Identities=17%  Similarity=0.159  Sum_probs=103.2

Q ss_pred             CCee-eeCCCceEEEcCCeEEEEEEEeccCC---CeEEEEeCCccCCCCC---------eEEcccceEEEccCCCCCCeE
Q psy15127         71 KPFP-ISEPSDATVLSGSVVEFVCRVGGDPL---PTILWRRDDGKMPTGR---------AKILDDRSLQIENVGPQDEGL  137 (633)
Q Consensus        71 ~p~~-~~~~~~~~~~~G~~~~L~C~~~~~p~---p~i~W~~~~~~i~~~~---------~~~~~~~~L~i~~v~~~d~G~  137 (633)
                      +|.+ +..|....+.+|++++|.|.+.+.+.   +.|+| + +..+....         ........|.|.+++.+|+|.
T Consensus         3 ~p~v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~-~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~   80 (214)
T 1ow0_A            3 HPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKT   80 (214)
T ss_dssp             CCCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-S-SCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCE
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE-c-CCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCe
Confidence            3444 45577777899999999999988754   68999 4 43332110         011123468889999999999


Q ss_pred             EEEEEEeCCceEEEEEEEE---EEeecccccc-CCCceEEecCCcEEEEEeCCCCCCC-CeEEEEECCEEeccCCCe---
Q psy15127        138 YICDVENLVGSISLRASLT---VHLLRDDFRA-EPKDTRVASGETALLECGPPKGQPE-PTLHWKKNGQFIDLESSK---  209 (633)
Q Consensus       138 Y~C~~~n~~g~~s~~~~l~---V~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~~p~-~~i~W~~~~~~~~~~~~~---  209 (633)
                      |+|.|.+..+.......|.   +..+ |.+.+ .+....+..|+.+.|.|.+...+|. +.|.|+|||..+......   
T Consensus        81 Y~C~~~~~~~~~~~~~~i~~~~~~~~-P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~  159 (214)
T 1ow0_A           81 FTCTAAYPESKTPLTATLSKSGNTFR-PEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWA  159 (214)
T ss_dssp             EEEEECCSSCSSCEEEEEECCSSCCC-CEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECC
T ss_pred             EEEEEecCCCCCceeEeeccCCCCCC-CEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecC
Confidence            9999998765432222332   2233 54433 2233345679999999995443564 599999999987654211   


Q ss_pred             eEEe---ccceeeeE---EE-------eeeEEEEeecCCCCC
Q psy15127        210 SLDL---SRRTLGWL---RV-------RPLYWNVARPRANLN  238 (633)
Q Consensus       210 ~~~~---~~~~~~~~---~~-------~g~y~C~a~~~~~~~  238 (633)
                      ....   .++++.+.   .+       .+.|+|.|.|.....
T Consensus       160 ~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~~  201 (214)
T 1ow0_A          160 SRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALPL  201 (214)
T ss_dssp             CEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCTT
T ss_pred             CcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCCC
Confidence            1122   23333221   11       268999999986543

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.34  E-value=7.3e-12  Score=102.03  Aligned_cols=102  Identities=24%  Similarity=0.329  Sum_probs=80.0

Q ss_pred             CCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEe-eeeceEEEecCCCCCeEEEEE
Q psy15127        408 LFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHR-ITSTSITVSDLKPDTSYMFIV  486 (633)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~~~Y~~~v  486 (633)
                      ..|++|..+++...+.+++.|+|.++...+  +.++.+|.|+|+..+. ..|...... .....+++.+|.+++.|.|+|
T Consensus         7 ~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~--~~~i~~Y~v~~~~~~~-~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV   83 (111)
T 1x5y_A            7 GPTSAPQHLTVEDVTDTTTTLKWRPPDRIG--AGGIDGYLVEYCLEGS-EEWVPANKEPVERCGFTVKDLPTGARILFRV   83 (111)
T ss_dssp             SCCCCCEEEEEEEECSSEEEEEEECCSCCC--SSCCCEEEEEEEETTC-CCCEESSSSCBSSSEEEEECCCTTCCEEEEE
T ss_pred             CCCcCCCCCEEEeccCCEEEEEECCCCcCC--CCcccEEEEEEEECCC-CceEEccccCCcccEEEECCCCCCCEEEEEE
Confidence            356778788888889999999999998653  4569999999987653 456643221 346789999999999999999


Q ss_pred             EEEeccccCCCCCCCCceeecCCCCC
Q psy15127        487 RAENSHGLGIPSPVSPITRTLGLNSL  512 (633)
Q Consensus       487 ~a~n~~G~g~~s~~~~~~~t~~~~p~  512 (633)
                      +|.|..|.|.+|.....+++.+..|.
T Consensus        84 ~A~n~~G~s~~S~~~~~v~~~~~~P~  109 (111)
T 1x5y_A           84 VGVNIAGRSEPATLLQPVTIRESGPS  109 (111)
T ss_dssp             EEEETTEECCCCCCSSCBCCCCCCCC
T ss_pred             EEEcCCcCCCCccCCCCEEecCCCCC
Confidence            99999999999877655666555443

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=2.1e-12  Score=104.33  Aligned_cols=77  Identities=22%  Similarity=0.316  Sum_probs=63.8

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.++|.|+|++|        ...++.|++| .|+|+..+...       |...     .  ...++++|.+|+|+
T Consensus        15 ~~~~~~~~si~l~W~~p--------~~~~g~i~~Y-~v~~~~~~~~~-------~~~~-----~--~~~~~~~i~~L~p~   71 (106)
T 2ed8_A           15 QAVSTSPTSILITWEPP--------AYANGPVQGY-RLFCTEVSTGK-------EQNI-----E--VDGLSYKLEGLKKF   71 (106)
T ss_dssp             EEECSSTTEEEEEEECC--------SSCSSCCCEE-EEEEEETTTCC-------EEEE-----E--ECSSCEEEESCCTT
T ss_pred             EEEecCCCEEEEEECCC--------CCCCCCeeEE-EEEEEECCCCc-------eEEE-----e--CCccEEEECCCCCC
Confidence            78888999999999965        3567899999 99999876543       4321     1  13789999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|.|..|.|++|+
T Consensus        72 t~Y~~~V~A~n~~G~g~~S~   91 (106)
T 2ed8_A           72 TEYSLRFLAYNRYGPGVSTD   91 (106)
T ss_dssp             CEEEEEEEEECSSCEEEECC
T ss_pred             CEEEEEEEEEeCCccCCCcC
Confidence            99999999999999999885

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.34  E-value=1.7e-12  Score=104.72  Aligned_cols=84  Identities=21%  Similarity=0.294  Sum_probs=67.9

Q ss_pred             eeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCC
Q psy15127        421 TTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPV  500 (633)
Q Consensus       421 ~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~  500 (633)
                      ...+++.|+|.++.   +|+.+|.+|.|+|+..+...+|.........+.++|.+|.|++.|+|+|.|.|..|.|.+|..
T Consensus        19 ~~~~sv~L~W~p~~---dggsPI~~Y~I~yr~~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~frV~A~N~~G~s~pS~~   95 (114)
T 2kbg_A           19 SSGKSFKLSITKQD---DGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVY   95 (114)
T ss_dssp             CSTTCEEEEECCCC---CSSSCCSEEEEEEEESSCCSCCEEEEEETTTCCEEECCCCTTCCEEEEEEEECTTSCEEEEEE
T ss_pred             cCCCEEEEEEECCC---CCCCcccEEEEEEEeCCCCCcEEeEEcCCCcCEEEEcCCCCCCEEEEEEEEEeCCcCcCCcCC
Confidence            57899999999865   457999999999999865455654444556678999999999999999999999999998764


Q ss_pred             CCceeecCC
Q psy15127        501 SPITRTLGL  509 (633)
Q Consensus       501 ~~~~~t~~~  509 (633)
                        .++|...
T Consensus        96 --~~~T~~~  102 (114)
T 2kbg_A           96 --EFSMPPK  102 (114)
T ss_dssp             --EECCCCC
T ss_pred             --EEEcCCC
Confidence              3656444

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.34  E-value=2.8e-12  Score=122.29  Aligned_cols=121  Identities=17%  Similarity=0.168  Sum_probs=88.2

Q ss_pred             CceEEeeC-----ceEEEcCCCC--CCeEEEEEEe----------------cCc----------------CCeeeeCCCc
Q psy15127         40 RRSRSIFG-----SVLGARGALS--DDQWKLIAKE----------------ALI----------------KPFPISEPSD   80 (633)
Q Consensus        40 ~~~~~~~~-----~~L~i~~v~~--~G~Y~C~a~~----------------v~~----------------~p~~~~~~~~   80 (633)
                      .|+.+..+     .+|.|.+++.  +|.|.|.+.+                |..                +|.+...|..
T Consensus        68 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~  147 (256)
T 3umt_A           68 GKAILTVDKSSSTAYLELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSS  147 (256)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSE
T ss_pred             ceEEEEEecCCCEEEEEECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCe
Confidence            46666543     2499999998  9999999976                221                5667777777


Q ss_pred             eEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccCC-------------CCCeEEcc---cceEEEccCCCCCCeEEEEEE
Q psy15127         81 ATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKMP-------------TGRAKILD---DRSLQIENVGPQDEGLYICDV  142 (633)
Q Consensus        81 ~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i~-------------~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~~  142 (633)
                      ..+.+|++++|.|.+.+.+.+.+.|+|+.  ..+.             .+++....   ..+|+|.+++.+|+|.|+|.|
T Consensus       148 ~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~  227 (256)
T 3umt_A          148 LSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQ  227 (256)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEE
T ss_pred             EEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEE
Confidence            88999999999999998888899999942  2111             12333222   246999999999999999999


Q ss_pred             EeCCce-EEEEEEEEEEee
Q psy15127        143 ENLVGS-ISLRASLTVHLL  160 (633)
Q Consensus       143 ~n~~g~-~s~~~~l~V~~~  160 (633)
                      .+.... ....+.|.|...
T Consensus       228 ~~~~~~~fg~gt~L~V~~~  246 (256)
T 3umt_A          228 YASSPPTFGGGTKLEIKRA  246 (256)
T ss_dssp             CSSSSCEECCCEEEEEC--
T ss_pred             eeCCCcEECCCEEEEEECC
Confidence            875433 345567788765

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.34  E-value=5e-12  Score=102.55  Aligned_cols=91  Identities=21%  Similarity=0.356  Sum_probs=72.9

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCc-cC--------CCCCeEEc----ccceEEEccCCCCCC
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG-KM--------PTGRAKIL----DDRSLQIENVGPQDE  135 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~-~i--------~~~~~~~~----~~~~L~i~~v~~~d~  135 (633)
                      ...|.+...|.++.+.+|++++|.|.+.+.|.+.+.|++++. .+        ..++....    .+..|.|.+++.+|+
T Consensus         4 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~   83 (108)
T 3m45_A            4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDE   83 (108)
T ss_dssp             ----CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGC
T ss_pred             ccCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHC
Confidence            346777888899999999999999999998889999999775 21        22344433    346899999999999


Q ss_pred             eEEEEEEEeCCceEEEEEEEEEEee
Q psy15127        136 GLYICDVENLVGSISLRASLTVHLL  160 (633)
Q Consensus       136 G~Y~C~~~n~~g~~s~~~~l~V~~~  160 (633)
                      |.|+|.+.| .+..+..+.|.|..+
T Consensus        84 G~Y~C~~~n-~~~~~~~~~L~V~~~  107 (108)
T 3m45_A           84 GQYTCSLFT-MPVKTSKAYLTVLGV  107 (108)
T ss_dssp             EEEEEEECS-SSCEEEEEEEEEECC
T ss_pred             eEEEEEEEc-CCCcEEEEEEEEEcC
Confidence            999999999 788889999999876

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.34  E-value=2.2e-13  Score=125.93  Aligned_cols=109  Identities=16%  Similarity=0.216  Sum_probs=80.9

Q ss_pred             CceEEeeC---ceEEEcCCCC--CCeEEEEEEe---------------c----CcCCeeeeCCCceEEEcCCeEEEEEEE
Q psy15127         40 RRSRSIFG---SVLGARGALS--DDQWKLIAKE---------------A----LIKPFPISEPSDATVLSGSVVEFVCRV   95 (633)
Q Consensus        40 ~~~~~~~~---~~L~i~~v~~--~G~Y~C~a~~---------------v----~~~p~~~~~~~~~~~~~G~~~~L~C~~   95 (633)
                      .|+.+...   .+|.|.+++.  +|.|+|.|.|               +    ..+|.+...+....+.+|+.++|.|.+
T Consensus        58 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~  137 (212)
T 1nfd_E           58 ERFSGSTSGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLV  137 (212)
T ss_dssp             TTEEEEEETTEEEEEETTCCGGGCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEE
T ss_pred             ccEEEEeeCCEEEEEECcCCcccCEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEE
Confidence            46655432   3799999998  9999999994               1    244555554544445679999999999


Q ss_pred             ecc-CC-CeEEEEeCCccCCCCCeE---------EcccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         96 GGD-PL-PTILWRRDDGKMPTGRAK---------ILDDRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        96 ~~~-p~-p~i~W~~~~~~i~~~~~~---------~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      .+. |. +.|+|+|+|..+..+...         ....+.|.|.+++.+|+|.|+|.|.|..+.
T Consensus       138 ~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          138 NDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             EEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             EeeECCccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence            876 54 799999999877543210         111246999999999999999999998765

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.34  E-value=2e-12  Score=120.67  Aligned_cols=121  Identities=21%  Similarity=0.262  Sum_probs=77.7

Q ss_pred             eCCCceEEEcCCeEEEEEEEecc--CCCeEEEEeCC--ccC------------------CCCCeEEccc-----ceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGD--PLPTILWRRDD--GKM------------------PTGRAKILDD-----RSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~--p~p~i~W~~~~--~~i------------------~~~~~~~~~~-----~~L~i~  128 (633)
                      .+|+.+.+.+|++++|.|.+.+.  +...+.|+|..  ...                  ..+|+....+     .+|+|.
T Consensus         5 ~q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (226)
T 3mlr_H            5 VESGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWT   84 (226)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEES
T ss_pred             EcCCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEEC
Confidence            34557889999999999999753  34579999843  111                  0134433322     359999


Q ss_pred             cCCCCCCeEEEEEEEeCCc---------eEEEEEEEEEEee---ccccccCCCceEEecCCcEEEEEeCCCCCC-CCeEE
Q psy15127        129 NVGPQDEGLYICDVENLVG---------SISLRASLTVHLL---RDDFRAEPKDTRVASGETALLECGPPKGQP-EPTLH  195 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~n~~g---------~~s~~~~l~V~~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~i~  195 (633)
                      +++.+|+|.|.|.+.+..+         .....+.|.|...   +|.+...+....+.+|+.+.|.|.+....| .+.+.
T Consensus        85 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~  164 (226)
T 3mlr_H           85 TLQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS  164 (226)
T ss_dssp             SCCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEE
T ss_pred             CCCcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEE
Confidence            9999999999999976421         1122345666532   133322222223457999999999655456 45888


Q ss_pred             E
Q psy15127        196 W  196 (633)
Q Consensus       196 W  196 (633)
                      |
T Consensus       165 W  165 (226)
T 3mlr_H          165 W  165 (226)
T ss_dssp             E
T ss_pred             E
Confidence            9

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.34  E-value=2.9e-12  Score=122.10  Aligned_cols=120  Identities=23%  Similarity=0.318  Sum_probs=75.3

Q ss_pred             CCCceEEEcCCeEEEEEEEecc--CCCeEEEEeCC--ccC------------------CCCCeEEccc-----ceEEEcc
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGD--PLPTILWRRDD--GKM------------------PTGRAKILDD-----RSLQIEN  129 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~--p~p~i~W~~~~--~~i------------------~~~~~~~~~~-----~~L~i~~  129 (633)
                      .++.+.+.+|++++|.|.+.+.  ....+.|+|..  ...                  ..+|+....+     .+|+|.+
T Consensus        29 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~  108 (256)
T 3sob_H           29 ESGGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNS  108 (256)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             ecCcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECC
Confidence            3456779999999999999753  24579999842  111                  0134433322     2499999


Q ss_pred             CCCCCCeEEEEEEEeCCc-----------eEEEEEEEEEEee---ccccccCCCceEEecCCcEEEEEeCCCCCC-CCeE
Q psy15127        130 VGPQDEGLYICDVENLVG-----------SISLRASLTVHLL---RDDFRAEPKDTRVASGETALLECGPPKGQP-EPTL  194 (633)
Q Consensus       130 v~~~d~G~Y~C~~~n~~g-----------~~s~~~~l~V~~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~i  194 (633)
                      ++.+|+|.|.|.+.+..+           .....+.|.|...   +|.+...+....+.+|+.++|.|.+....| ...+
T Consensus       109 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v  188 (256)
T 3sob_H          109 LRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV  188 (256)
T ss_dssp             CCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEE
T ss_pred             CCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEE
Confidence            999999999999986431           1233446677531   233332233334568999999999655456 4588


Q ss_pred             EE
Q psy15127        195 HW  196 (633)
Q Consensus       195 ~W  196 (633)
                      .|
T Consensus       189 ~W  190 (256)
T 3sob_H          189 SW  190 (256)
T ss_dssp             EE
T ss_pred             EE
Confidence            89

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.34  E-value=2.5e-12  Score=99.84  Aligned_cols=83  Identities=16%  Similarity=0.324  Sum_probs=62.1

Q ss_pred             cCCeeeeCCCceEE--EcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEccc---ceEEEccCCCCCCeEEEEEEE
Q psy15127         70 IKPFPISEPSDATV--LSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDD---RSLQIENVGPQDEGLYICDVE  143 (633)
Q Consensus        70 ~~p~~~~~~~~~~~--~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~~---~~L~i~~v~~~d~G~Y~C~~~  143 (633)
                      .||.|...+.+..+  .+|+.+.|.|.+.+ |.+.++|+|||..+..+ +..+..+   ..|.|.+++.+|+|.|+|.|.
T Consensus         3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~   81 (91)
T 2lvc_A            3 MPVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAG   81 (91)
T ss_dssp             CCCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECS
T ss_pred             CCcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEc
Confidence            35666666555544  58999999999865 88899999999999765 3333332   379999999999999999985


Q ss_pred             eCCceEEEEEEEEE
Q psy15127        144 NLVGSISLRASLTV  157 (633)
Q Consensus       144 n~~g~~s~~~~l~V  157 (633)
                      |.    +..+.|+|
T Consensus        82 n~----~~~~~ltV   91 (91)
T 2lvc_A           82 DE----CAYFTVTI   91 (91)
T ss_dssp             SC----EEEEEEEC
T ss_pred             ce----EEEEEEEC
Confidence            53    45555553

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.34  E-value=1.2e-12  Score=123.11  Aligned_cols=110  Identities=14%  Similarity=0.176  Sum_probs=81.1

Q ss_pred             CCceEEe---eCceEEEcCCCC--CCeEEEEEEe-------------c---CcCCeeeeCCCceEEEcCCeEEEEEEEec
Q psy15127         39 SRRSRSI---FGSVLGARGALS--DDQWKLIAKE-------------A---LIKPFPISEPSDATVLSGSVVEFVCRVGG   97 (633)
Q Consensus        39 ~~~~~~~---~~~~L~i~~v~~--~G~Y~C~a~~-------------v---~~~p~~~~~~~~~~~~~G~~~~L~C~~~~   97 (633)
                      ..|+.+.   .+++|.|.+++.  +|.|+|.+.+             +   ..+|.+...+....+.+|+.++|.|.+.+
T Consensus        82 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~  161 (237)
T 3sob_L           82 PSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNN  161 (237)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEE
T ss_pred             CCcEEEEcCCCEEEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcc
Confidence            3465554   345799999998  9999999976             1   34566655554444557899999999987


Q ss_pred             -cC-CCeEEEEeCCccCCCCC-----------eEEcccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         98 -DP-LPTILWRRDDGKMPTGR-----------AKILDDRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        98 -~p-~p~i~W~~~~~~i~~~~-----------~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                       .| .+.|+|+|+|..+..+.           ........|.|..+..+|+|.|+|.|.|....
T Consensus       162 ~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  225 (237)
T 3sob_L          162 FYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  225 (237)
T ss_dssp             EBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             cCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCC
Confidence             44 57999999999886431           11111246889999999999999999998654

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.34  E-value=1.5e-12  Score=120.30  Aligned_cols=110  Identities=16%  Similarity=0.184  Sum_probs=81.5

Q ss_pred             CCceEEee---CceEEEcCCCC--CCeEEEEEEe-------------c---CcCCeeeeCCCceEEEcCCeEEEEEEEec
Q psy15127         39 SRRSRSIF---GSVLGARGALS--DDQWKLIAKE-------------A---LIKPFPISEPSDATVLSGSVVEFVCRVGG   97 (633)
Q Consensus        39 ~~~~~~~~---~~~L~i~~v~~--~G~Y~C~a~~-------------v---~~~p~~~~~~~~~~~~~G~~~~L~C~~~~   97 (633)
                      ..|+.+..   +.+|.|.+++.  +|.|+|.|.+             +   ..+|.+...+....+..|+.++|.|.+.+
T Consensus        59 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g  138 (213)
T 3r06_A           59 PSRFSGSGSGRDSSFTISSLESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNN  138 (213)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEE
T ss_pred             CCcEEEeccCCEEEEEECCCCcccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEee
Confidence            34665543   34799999998  9999999976             2   45666766666655667889999999987


Q ss_pred             cCC--CeEEEEeCCccCCCCC-eEE----cc------cceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         98 DPL--PTILWRRDDGKMPTGR-AKI----LD------DRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        98 ~p~--p~i~W~~~~~~i~~~~-~~~----~~------~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      .++  +.+.|+|+|..+..+. ...    ..      ...|.|.....+|+|.|+|.|.|....
T Consensus       139 ~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~  202 (213)
T 3r06_A          139 FYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTST  202 (213)
T ss_dssp             EBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred             ecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccC
Confidence            654  3899999999876532 110    01      236888888889999999999997643

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.34  E-value=1e-12  Score=106.58  Aligned_cols=81  Identities=17%  Similarity=0.234  Sum_probs=64.6

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      .+..++.+++.|+|++|       ..+++..|++| .|+|+..+...       |...+.    .....+.|++.+|+++
T Consensus        18 ~v~~v~~~sv~L~W~~P-------~~~gg~~i~~Y-~Ve~~~~~~~~-------w~~~~~----~~~~~~~~~v~~L~p~   78 (112)
T 1bpv_A           18 VPLNITRHTVTLKWAKP-------EYTGGFKITSY-IVEKRDLPNGR-------WLKANF----SNILENEFTVSGLTED   78 (112)
T ss_dssp             EEEEEETTEEEEECCCC-------SCCTTCCCSCC-EEEEEETTSCC-------CEECCC----SCCCSSEEEECSCCSS
T ss_pred             EEEEeeCCEEEEEECCC-------CcCCCCcccEE-EEEEEECCCCc-------eEEeec----ccCccCEEEECCCCCC
Confidence            67778999999999955       12445679999 99999876543       765432    1234788999999999


Q ss_pred             eeEEEEEeccccccc-cccCC
Q psy15127        614 TKYEFFLVPFFKTVE-GARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~-g~~s~  633 (633)
                      +.|.|+|+|.|..|. |++|+
T Consensus        79 t~Y~frV~A~N~~G~~s~~S~   99 (112)
T 1bpv_A           79 AAYEFRVIAKNAAGAISPPSE   99 (112)
T ss_dssp             CCEEEEEEEECTTSCEEEEEE
T ss_pred             CEEEEEEEEEECCCCCCCCCC
Confidence            999999999999997 99874

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.33  E-value=2.4e-12  Score=104.91  Aligned_cols=81  Identities=15%  Similarity=0.108  Sum_probs=64.3

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.+++.|+|++|      . .+++..|++| .|+|+..+...       |......    ....+.+++.+|+++
T Consensus        16 ~~~~~~~~sv~l~W~~p------~-~~~~~~i~~Y-~v~~~~~~~~~-------w~~~~~~----~~~~~~~~v~~L~p~   76 (111)
T 1x5y_A           16 TVEDVTDTTTTLKWRPP------D-RIGAGGIDGY-LVEYCLEGSEE-------WVPANKE----PVERCGFTVKDLPTG   76 (111)
T ss_dssp             EEEEECSSEEEEEEECC------S-CCCSSCCCEE-EEEEEETTCCC-------CEESSSS----CBSSSEEEEECCCTT
T ss_pred             EEEeccCCEEEEEECCC------C-cCCCCcccEE-EEEEEECCCCc-------eEEcccc----CCcccEEEECCCCCC
Confidence            78889999999999965      1 1234459999 99998876543       7644321    134789999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|.|..|.|++|+
T Consensus        77 t~Y~frV~A~n~~G~s~~S~   96 (111)
T 1x5y_A           77 ARILFRVVGVNIAGRSEPAT   96 (111)
T ss_dssp             CCEEEEEEEEETTEECCCCC
T ss_pred             CEEEEEEEEEcCCcCCCCcc
Confidence            99999999999999999984

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.33  E-value=6.2e-12  Score=112.40  Aligned_cols=107  Identities=10%  Similarity=0.041  Sum_probs=75.5

Q ss_pred             CceEE-eeCceEEEcCCCC--CCeEEEEEEecCc-----CCeeeeC-CCceEEEcCCeEEEEEEE-eccCCCeEEEEeCC
Q psy15127         40 RRSRS-IFGSVLGARGALS--DDQWKLIAKEALI-----KPFPISE-PSDATVLSGSVVEFVCRV-GGDPLPTILWRRDD  109 (633)
Q Consensus        40 ~~~~~-~~~~~L~i~~v~~--~G~Y~C~a~~v~~-----~p~~~~~-~~~~~~~~G~~~~L~C~~-~~~p~p~i~W~~~~  109 (633)
                      .|+.+ ..+++|.|.+++.  +|.|+|.+.+...     ...+... +.......+..++|.|.+ .+ |.|.|+|++++
T Consensus        60 ~R~~l~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~L~V~~~~~~P~i~~~~~~v~L~C~~~~g-p~p~i~W~~~~  138 (180)
T 2dru_A           60 DRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWECSNATLTCEVLEG-TDVELKLYQGK  138 (180)
T ss_dssp             TTEEECTTTCCEEECSCCGGGCEEEEEEEESSSEEEEEEEEEEECCCCCCEEEEEGGGTEEEEECSSC-TTCEEEEEETT
T ss_pred             CeEEEeCCCccEEEcCCCHHHCeEEEEEEEcCCeEEEEEEEEEECCCCCCEEEecCCCEEEEEEeCCC-CCCEEEEEECC
Confidence            47777 5678999999999  9999999866110     0011111 111222356779999999 56 89999999999


Q ss_pred             ccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEE
Q psy15127        110 GKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRAS  154 (633)
Q Consensus       110 ~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~  154 (633)
                      ..+.     ...+.+|.+..  .+|+|.|+|.|.|..+..+....
T Consensus       139 ~~l~-----~~~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~  176 (180)
T 2dru_A          139 EHLR-----SLRQKTMSYQW--TNLRAPFKCKAVNRVSQESEMEV  176 (180)
T ss_dssp             EEEE-----EESSSEEEEEC--SCCSSCEEEEEEETTEEEEEEEC
T ss_pred             eECc-----CCCCCEEEEEE--hhcCccEEEEEecCcCcccccee
Confidence            8775     12345676633  78999999999999987665543

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens}

Probab=99.33  E-value=1.8e-12  Score=107.55  Aligned_cols=82  Identities=16%  Similarity=0.150  Sum_probs=62.5

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhh-hcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeecccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARA-RLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRK  612 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~-i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~  612 (633)
                      .+..++.+ +.|+|++|        ...+|. |++| .|+|+......       |... ...+......+.++|.+|++
T Consensus        15 ~~~~~~~t-v~l~W~~P--------~~~~G~pI~~Y-~v~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~i~~L~p   76 (122)
T 2e3v_A           15 QVEPYSST-AQVQFDEP--------EATGGVPILKY-KAEWRAVGEEV-------WHSK-WYDAKEASMEGIVTIVGLKP   76 (122)
T ss_dssp             EEEECSSC-EEEEEECC--------CCC--CCEEEE-EEEEEETTCCS-------CEEE-EEEHHHHHTTTEEEECSCCT
T ss_pred             EEEecCCc-EEEEECCC--------CcCCCCcceEE-EEEEEECCCCC-------cccc-eeeeeecCccceEEeCCCCC
Confidence            67777777 99999965        456676 9999 99999887644       5211 01112234578999999999


Q ss_pred             ceeEEEEEeccccccccccCC
Q psy15127        613 FTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       613 ~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      ++.|.|+|+|.|.+|.|++|+
T Consensus        77 ~t~Y~~rV~A~n~~G~g~~S~   97 (122)
T 2e3v_A           77 ETTYAVRLAALNGKGLGEISA   97 (122)
T ss_dssp             TCEEEEEEEEEETTEECCCCC
T ss_pred             CCEEEEEEEEEeCCccCCCcc
Confidence            999999999999999999985

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}

Probab=99.33  E-value=1.3e-11  Score=113.68  Aligned_cols=180  Identities=19%  Similarity=0.229  Sum_probs=119.8

Q ss_pred             CCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEE--EEEeeeeceEEEecCC--CCCeEEEEEE
Q psy15127        412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVV--AAHRITSTSITVSDLK--PDTSYMFIVR  487 (633)
Q Consensus       412 ~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~--~~~~~~~~~~~i~~L~--p~~~Y~~~v~  487 (633)
                      +|.++++...+-.. .|.|.++...   +.....|.|+|+.-+. ..|..  .+..+..+...|+++.  ++..|.+||+
T Consensus        11 ~P~nv~~~s~n~~~-iL~W~p~~~~---~~~~~~Y~Vqy~~~~~-~~W~~~~~C~~~~~~~Cdlt~~~~~~~~~Y~~RV~   85 (221)
T 4doh_R           11 KPANITFLSINMKN-VLQWTPPEGL---QGVKVTYTVQYFIYGQ-KKWLNKSECRNINRTYCDLSAETSDYEHQYYARVR   85 (221)
T ss_dssp             CCEEEEEEEETTEE-EEEEECCCCS---SCCCCEEEEEEEETTS-CCCEECGGGSSBSSSEEECTTTTCCSSCCEEEEEE
T ss_pred             CCceeEEEEECCcE-EEEEcCCCCC---CCCCeEEEEEEEECCC-CCceecccccCCCCCEEeCCCccccCCCCEEEEEE
Confidence            46777777765555 5999998632   2467899999997543 56764  3344556788888864  5678999999


Q ss_pred             EEeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhh----
Q psy15127        488 AENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEAR----  563 (633)
Q Consensus       488 a~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~----  563 (633)
                      |.++.+.+.++.... +.+.......||.+                .+. ....+|.|.|.+|    .....+++|    
T Consensus        86 A~~g~~~S~w~~~~~-F~p~~~t~igPP~v----------------~v~-~~~~~l~V~~~~P----~~~~~~~~~~~~s  143 (221)
T 4doh_R           86 AIWGTKCSKWAESGR-FYPFLETQIGPPEV----------------ALT-TDEKSISVVLTAP----EKWKRNPEDLPVS  143 (221)
T ss_dssp             EESSSCBCCCEECCC-BCHHHHCBCCCCEE----------------EEE-CCSSCEEEEEECC----BCCCSSTTSCCCB
T ss_pred             EEcCCcccCCEecCc-eechhhCccCCCEE----------------EEE-ECCCEEEEEEeCC----CcccccCCCCceE
Confidence            999888888765432 32222222223333                555 4678999999965    111111122    


Q ss_pred             -----hhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEecccc--ccccccCC
Q psy15127        564 -----ARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFK--TVEGARLD  633 (633)
Q Consensus       564 -----~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~--~g~g~~s~  633 (633)
                           ....| .|.|.+.+...      .+.    ...    ....+.|.+|+|++.|.|+|+|...  .|.|.+|+
T Consensus       144 ~~~i~~~l~Y-~V~y~~~~~~~------~~~----~~~----~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~~g~~S~  205 (221)
T 4doh_R          144 MQQIYSNLKY-NVSVLNTKSNR------TWS----QCV----TNHTLVLTWLEPNTLYCVHVESFVPGPPRRAQPSE  205 (221)
T ss_dssp             HHHHSTTCEE-EEEEEETTTTE------EEE----EEE----CSSEEEECSCCTTCEEEEEEEEECSSSCCCCCCCE
T ss_pred             HHHhcCceEE-EEEEEECCCCc------EEE----Eee----cCcEEEEecCCCCCcEEEEEEEEEcCCCCCCCCCC
Confidence                 14689 99998876543      111    111    2468899999999999999999975  68888873

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.33  E-value=3.4e-12  Score=105.97  Aligned_cols=99  Identities=28%  Similarity=0.424  Sum_probs=79.1

Q ss_pred             CCCCCCc--EEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEE--EeeeeceEEEecCCCCCeEEEE
Q psy15127        410 PGPPAAP--VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAA--HRITSTSITVSDLKPDTSYMFI  485 (633)
Q Consensus       410 p~~p~~~--~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~~~i~~L~p~~~Y~~~  485 (633)
                      |.+|..+  .......+++.|+|.++.   +++.++.+|.|+|+..+  ..|....  .......++|.+|.|++.|.|+
T Consensus        18 P~~P~~~~~~~~~~~~~sv~l~W~~p~---~~~~~i~~Y~v~~~~~~--~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~fr   92 (121)
T 1wf5_A           18 PHAPEHPVATLSTVERRAINLTWTKPF---DGNSPLIRYILEMSENN--APWTVLLASVDPKATSVTVKGLVPARSYQFR   92 (121)
T ss_dssp             CCCCSSCEEEECSSSTTEEEEECCCCC---CCSSCEEEEEEEEECTT--CCCEEEESSCCTTCCEEEEESCCTTCEEEEE
T ss_pred             CccCCCcceeeEeccCCEEEEEEcCCC---CCCCcceEEEEEEEcCC--CCceEeEcccCCCccEEEECCcCCCCEEEEE
Confidence            4568888  677778899999999985   23678999999999765  5676431  2234678999999999999999


Q ss_pred             EEEEeccccCCCCCCCCceeecCCCCCC
Q psy15127        486 VRAENSHGLGIPSPVSPITRTLGLNSLV  513 (633)
Q Consensus       486 v~a~n~~G~g~~s~~~~~~~t~~~~p~~  513 (633)
                      |+|.|..|.|+++.....++|.+.+|..
T Consensus        93 V~A~n~~G~s~~S~~~~~~~t~~~~P~~  120 (121)
T 1wf5_A           93 LCAVNDVGKGQFSKDTERVSLPESGPSS  120 (121)
T ss_dssp             EEEEESSCEEEECCCCSCEECCCCSSCC
T ss_pred             EEEEcCCccCCCcCCcceeEcCCCCCCC
Confidence            9999999999998876557777776654

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.33  E-value=6.5e-12  Score=120.79  Aligned_cols=183  Identities=16%  Similarity=0.212  Sum_probs=89.2

Q ss_pred             CCCCCCeEEEEEEEeCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEEC--CEEec---
Q psy15127        130 VGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQFID---  204 (633)
Q Consensus       130 v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~--~~~~~---  204 (633)
                      .+++|.+.|.|.+.+..|.......+.|       ...|....+.+|++++|.|.+ .+ +.+.+.|+|.  +....   
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~~~~~~~~v-------~~~p~~v~v~~G~~v~L~C~~-~~-~~~~v~W~k~~~~~~~~~~~   73 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGSGGGGGMKV-------IQTPRYLVKGQGQKAKMRCIP-EK-GHPVVFWYQQNKNNEFKFLI   73 (270)
T ss_dssp             -------------------------CCC-------EEECSEEEEETTSCEEEEEEC-CT-TCCEEEEEEECTTCCEEEEE
T ss_pred             chhhhHHHHHHHHhccCCccccccceeE-------EeCCCeEEEcCCCCEEEEEEe-cC-CCceEEEEEECCCCCcEEEE
Confidence            4578999999999988776544443333       344566789999999999994 44 6789999982  21100   


Q ss_pred             -cCCCe----------eEEec-----cceeeeEEE----eeeEEEEeecCCCC-------CCcccccc------cceeEE
Q psy15127        205 -LESSK----------SLDLS-----RRTLGWLRV----RPLYWNVARPRANL-------NPRYIGRK------MASLLI  251 (633)
Q Consensus       205 -~~~~~----------~~~~~-----~~~~~~~~~----~g~y~C~a~~~~~~-------~p~~~~~~------~~~~~~  251 (633)
                       .....          .+...     ...|.+.++    .|.|.|.+.+....       ...+....      .+...+
T Consensus        74 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~  153 (270)
T 3qib_D           74 NFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAV  153 (270)
T ss_dssp             EEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEE
T ss_pred             EECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEE
Confidence             00000          11110     112222222    48999999863211       00111110      111111


Q ss_pred             -------ecCCceEEEEEEEee-ecCC-eeEEEECCEEEEeccC-----------CccceEEEccCceEEEcCCCCCC-C
Q psy15127        252 -------WNHPRVNRLSCFAEG-SPLP-SVFWTQEGSQVLMFPG-----------NAYGHLHVTQEGTLRIQGVQKED-A  310 (633)
Q Consensus       252 -------~~~g~~~~l~C~~~g-~p~~-~v~W~~~g~~~~~~~~-----------~~~~~~~~~~~~~l~i~~~~~~d-~  310 (633)
                             +..|+.++|.|.+.| .|.+ .+.|+++|..+.....           .....+.  ....|.|.....+| .
T Consensus       154 ~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~--~~s~L~i~~~~~~d~~  231 (270)
T 3qib_D          154 FEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYA--LSSRLRVSATFWQNPR  231 (270)
T ss_dssp             EECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEE--EEEEEEEEHHHHHSTT
T ss_pred             ECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEE--EEEEEEEcHHHhccCC
Confidence                   123789999999998 5556 8999999988742100           0011111  12357787777777 9


Q ss_pred             eEEEEEEEeCCce
Q psy15127        311 GFFVCSALSVAGS  323 (633)
Q Consensus       311 G~Y~C~a~n~~g~  323 (633)
                      |.|+|.|.|....
T Consensus       232 g~YtC~v~~~~l~  244 (270)
T 3qib_D          232 NHFRCQVQFYGLS  244 (270)
T ss_dssp             CEEEEEEEECCBC
T ss_pred             CeEEEEEEecCCC
Confidence            9999999987543

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.33  E-value=2.1e-11  Score=100.89  Aligned_cols=101  Identities=20%  Similarity=0.289  Sum_probs=80.8

Q ss_pred             CCCCCCCcEEE-EeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEE
Q psy15127        409 FPGPPAAPVIL-NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVR  487 (633)
Q Consensus       409 ~p~~p~~~~~~-~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~  487 (633)
                      .|++|..+.+. ....+++.|+|.+|...+  +.++.+|.|+|+..+....|.... ....+.++|.+|.|++.|.|+|+
T Consensus        17 ~P~~P~~~~~~~~~~~~sv~l~W~~p~~~g--g~~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~v~~L~p~t~Y~frV~   93 (120)
T 2crm_A           17 KPGIPVKPSVKGKIHSHSFKITWDPPKDNG--GATINKYVVEMAEGSNGNKWEMIY-SGATREHLCDRLNPGCFYRLRVY   93 (120)
T ss_dssp             CCCCCCCCEEEEEEETTEEEEECCCCTTCC--SSCCCEEEEEEEESSSSCCCEEEE-CSSCSEEEECSCCTTSCEEEEEE
T ss_pred             CCCCCCCCEEeeccCCCEEEEEECCCCcCC--CCeeeEEEEEEccCCCCcCCEEEE-eccccEEEECCCCCCCEEEEEEE
Confidence            46778888777 778999999999998653  568999999999876545676543 33567899999999999999999


Q ss_pred             EEeccccCCCCCCCCceeecCCCCCC
Q psy15127        488 AENSHGLGIPSPVSPITRTLGLNSLV  513 (633)
Q Consensus       488 a~n~~G~g~~s~~~~~~~t~~~~p~~  513 (633)
                      |.|..|.|++|... .++|...+|.+
T Consensus        94 A~n~~G~s~~S~~~-~~~T~~~~p~p  118 (120)
T 2crm_A           94 CISDGGQSAVSESL-LVQTPAVSGPS  118 (120)
T ss_dssp             EEETTEECCCCCCC-CCCCCCCSCCS
T ss_pred             EEcCCccCCCcccE-EEEcCCCCCCC
Confidence            99999999998776 46666655443

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.33  E-value=6.7e-12  Score=105.09  Aligned_cols=105  Identities=23%  Similarity=0.299  Sum_probs=81.3

Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecC-CCCeEEEEEeeeeceEEEecCCCCCeEEEEEEE
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDL-QTGWVVAAHRITSTSITVSDLKPDTSYMFIVRA  488 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a  488 (633)
                      |++|..+.+...+.+++.|+|.++.   ++++++.+|.|+|+.... ...|.............+.+|.|++.|.|+|+|
T Consensus        17 P~~P~~~~~~~~~~~sv~l~W~p~~---~~~~~i~~Y~v~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~frV~A   93 (127)
T 1uey_A           17 PNPPFDLELTDQLDKSVQLSWTPGD---DNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMA   93 (127)
T ss_dssp             CCCCEEEEEECCSSSCEEEEEECCC---CCSSCEEEEEEEEEBTTTCTTCEEEEEEEESSCCEEEECCCTTCEECCEEEE
T ss_pred             CcCCCCcEEEEccCCEEEEEEECCC---CCCCCceEEEEEEEECCCCCCccEEEeeeCCCceEEEecCCCCCEEEEEEEE
Confidence            4567777788888999999999875   336889999999987643 356765443322223368899999999999999


Q ss_pred             EeccccCCCCCCCCceeecCCCCCCCcch
Q psy15127        489 ENSHGLGIPSPVSPITRTLGLNSLVPQHL  517 (633)
Q Consensus       489 ~n~~G~g~~s~~~~~~~t~~~~p~~~~~~  517 (633)
                      .|..|.|++|.....++|.+.+|..+|..
T Consensus        94 ~n~~G~s~~S~~~~~~~T~~~~P~~~P~~  122 (127)
T 1uey_A           94 VNSIGKSLPSEASEQYLTKASEPDKNPTS  122 (127)
T ss_dssp             EESSCBCCCCSCCCCEECCCSSCSSCSSC
T ss_pred             EeCCccCCccccccceEcCCCCCCCCCce
Confidence            99999999998855688888888776543

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.33  E-value=1.4e-11  Score=100.13  Aligned_cols=102  Identities=26%  Similarity=0.302  Sum_probs=81.3

Q ss_pred             CCCCCCCCcEE-EEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEE
Q psy15127        408 LFPGPPAAPVI-LNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIV  486 (633)
Q Consensus       408 ~~p~~p~~~~~-~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v  486 (633)
                      ..|++|..+.+ .....+++.|+|.+|...+  +.++.+|.|+|+..+. ..|.... ......++|.+|.|++.|.|+|
T Consensus         7 ~~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~--~~~i~~Y~v~~~~~~~-~~~~~~~-~~~~~~~~v~~L~p~t~Y~frV   82 (110)
T 2crz_A            7 GPPGPCLPPRLQGRPKAKEIQLRWGPPLVDG--GSPISCYSVEMSPIEK-DEPREVY-QGSEVECTVSSLLPGKTYSFRL   82 (110)
T ss_dssp             CCCCCCCCCEECSCCCSSEEEEECCCCSCCT--TSCCCEEEEEEECTTS-CCCEEEE-EESCSEEEEESCCTTCEEEECC
T ss_pred             CCCCCCCCceeccccCCCEEEEEeCCCCCCC--CceeEEEEEEEEeCCC-CceEEEE-eCCcEEEEECCcCCCCEEEEEE
Confidence            35778888887 4577889999998886543  5789999999987543 4565443 3457889999999999999999


Q ss_pred             EEEeccccCCCCCCCCceeecCCCCCCC
Q psy15127        487 RAENSHGLGIPSPVSPITRTLGLNSLVP  514 (633)
Q Consensus       487 ~a~n~~G~g~~s~~~~~~~t~~~~p~~~  514 (633)
                      +|.|..|.|++|... .+.|...+|.+|
T Consensus        83 ~A~n~~G~g~~S~~~-~~~T~~~~P~~P  109 (110)
T 2crz_A           83 RAANKMGFGPFSEKC-DITTAPGSGPSS  109 (110)
T ss_dssp             EEECSSCBCCCCCCE-EEECCCSCCCCC
T ss_pred             EEEcCCccCCCCCcc-ccccCCCCCCCC
Confidence            999999999999876 467777776655

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.33  E-value=5.6e-12  Score=102.21  Aligned_cols=94  Identities=20%  Similarity=0.329  Sum_probs=75.4

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEcccc---eEEEccCCCCCCeEEEEEEEeC
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDDR---SLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~~~---~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      .+|.|...+....+.+|+.++|.|.+.+.  |.+.|+|++..+..+ ++....++   .|.|.+++.+|+|.|+|.|.  
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~--   82 (108)
T 2dm7_A            7 GPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCG--   82 (108)
T ss_dssp             CCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEET--
T ss_pred             CCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEEc--
Confidence            57888888899999999999999999764  689999999988653 44444444   49999999999999999993  


Q ss_pred             CceEEEEEEEEEEeeccccccCCC
Q psy15127        146 VGSISLRASLTVHLLRDDFRAEPK  169 (633)
Q Consensus       146 ~g~~s~~~~l~V~~~~p~~~~~~~  169 (633)
                        ..+..+.|.|..+++.+...+.
T Consensus        83 --n~~~~~~l~V~~~p~~~~~~~~  104 (108)
T 2dm7_A           83 --QERTSATLTVRALPARFTEGSG  104 (108)
T ss_dssp             --TEEEEEECEEECCCSSCCCCCC
T ss_pred             --CCEEEEEEEEecCCHHHccCcc
Confidence              4577888999987565555444

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=6.2e-12  Score=104.11  Aligned_cols=79  Identities=20%  Similarity=0.237  Sum_probs=60.4

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhh----cceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeec
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARAR----LGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTH  609 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i----~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~  609 (633)
                      ++..+++++|.|+|++|        ...++.+    .+| .|+|+......     ..|..     +  ....++++|.|
T Consensus        26 ~~~~~s~tsi~lsW~~p--------~~~~~~i~~~~~~Y-~v~y~~~~~~~-----~~~~~-----~--~~~~~~~~v~g   84 (123)
T 2edd_A           26 QAVALTHDAVRVSWADN--------SVPKNQKTSEVRLY-TVRWRTSFSAS-----AKYKS-----E--DTTSLSYTATG   84 (123)
T ss_dssp             EEEEEETTEEEEEEECS--------SSCSSCCCSCCCCE-EEEEEETTCTT-----CCCCC-----E--EESSSEEEEES
T ss_pred             EEEEcCCCeEEEEecCC--------CCCcccccCcCceE-EEEEEECCCCC-----ccEEE-----E--eCCceEEEecC
Confidence            88899999999999954        2233334    499 99999874322     11221     1  12478999999


Q ss_pred             cccceeEEEEEeccccccccccCC
Q psy15127        610 LRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       610 L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      |+|++.|.|+|+|.|..|+|++|+
T Consensus        85 L~P~T~Y~f~V~A~n~~g~g~~S~  108 (123)
T 2edd_A           85 LKPNTMYEFSVMVTKNRRSSTWSM  108 (123)
T ss_dssp             CCTTCEEEEEEEECCSSSCCCCCC
T ss_pred             CCCCCEEEEEEEEeCCCcccCCCC
Confidence            999999999999999999999985

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.33  E-value=4.1e-12  Score=117.24  Aligned_cols=113  Identities=17%  Similarity=0.151  Sum_probs=80.8

Q ss_pred             CceEEeeC---ceEEEcCCCC--CCeEEEEEEe-------------c----CcCCeeeeCCCceEEEcCCeEEEEEEEec
Q psy15127         40 RRSRSIFG---SVLGARGALS--DDQWKLIAKE-------------A----LIKPFPISEPSDATVLSGSVVEFVCRVGG   97 (633)
Q Consensus        40 ~~~~~~~~---~~L~i~~v~~--~G~Y~C~a~~-------------v----~~~p~~~~~~~~~~~~~G~~~~L~C~~~~   97 (633)
                      .|+.+..+   .+|.|.+++.  +|.|+|.|.+             +    ..+|.+...+....+.+|+.++|.|.+.+
T Consensus        62 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g  141 (212)
T 1q0x_L           62 ARFSGSLIGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITD  141 (212)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEE
T ss_pred             ccEEEEeeCCEEEEEECCCCccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEE
Confidence            45655432   3799999998  9999999988             1    13455544443333447899999999987


Q ss_pred             cC-CC-eEEEEeCCccCCCCCeE----Ecc------cceEEEccCCCCCCeEEEEEEEeCCceEEEE
Q psy15127         98 DP-LP-TILWRRDDGKMPTGRAK----ILD------DRSLQIENVGPQDEGLYICDVENLVGSISLR  152 (633)
Q Consensus        98 ~p-~p-~i~W~~~~~~i~~~~~~----~~~------~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~  152 (633)
                      .+ .+ .|+|+|+|..+..+...    ...      ...|.|.++..+|+|.|+|.|.|......+.
T Consensus       142 ~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~  208 (212)
T 1q0x_L          142 FYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKT  208 (212)
T ss_dssp             EBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEE
T ss_pred             EeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeee
Confidence            54 43 89999999887654211    111      2368999999999999999999987654433

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=1.9e-12  Score=107.23  Aligned_cols=94  Identities=14%  Similarity=0.126  Sum_probs=75.2

Q ss_pred             eeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccc
Q psy15127        504 TRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTA  583 (633)
Q Consensus       504 ~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~  583 (633)
                      ..+.+.+|.+|.++                ++..++.++|.|+|++|        .+.++.|.+| .|+|+......   
T Consensus        11 ~~~~~~~P~~P~~l----------------~~~~~~~~sv~l~W~~p--------~~~~~~i~~Y-~v~~~~~~~~~---   62 (119)
T 2ed7_A           11 IPSSSVLPSAPRDV----------------VPVLVSSRFVRLSWRPP--------AEAKGNIQTF-TVFFSREGDNR---   62 (119)
T ss_dssp             CCCSSSSCCCCSCC----------------EEEEECSSCEEEECCCC--------SCCSSCEEEE-EEEEEESSCCC---
T ss_pred             CCCCCCCCcCCcce----------------EEEecCCCEEEEEEeCC--------CCCCCcEEEE-EEEEEeCCCCc---
Confidence            45667778777777                78888999999999965        3467899999 99998876543   


Q ss_pred             eeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        584 VRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       584 ~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                          |...    .......+.++|.+|+|++.|.|+|+|.|..|.|++|+
T Consensus        63 ----~~~~----~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  104 (119)
T 2ed7_A           63 ----ERAL----NTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQ  104 (119)
T ss_dssp             ----CEEE----ECCCTTCCEEEECSCCSSSEEEECCEEEESSCBCSCCC
T ss_pred             ----ceee----EeecCCceEEEeCCCCCCCEEEEEEEEEcCCccCCCcC
Confidence                3211    12335688999999999999999999999999999985

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=4.1e-12  Score=104.19  Aligned_cols=82  Identities=15%  Similarity=0.109  Sum_probs=64.4

Q ss_pred             eeeec--ccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccc
Q psy15127        534 ELIPT--ASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLR  611 (633)
Q Consensus       534 ~~~~~--~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~  611 (633)
                      ++..+  +.++|.|+|++|        ...+|.|.+| .|+|+......    ...|.     ........++++|.+|+
T Consensus        16 ~~~~~~~~~~sv~l~W~~p--------~~~~g~i~~Y-~v~~~~~~~~~----~~~~~-----~~~~~~~~~~~~i~~L~   77 (114)
T 2ede_A           16 TVITREGKPRAVIVSWQPP--------LEANGKITAY-ILFYTLDKNIP----IDDWI-----METISGDRLTHQIMDLN   77 (114)
T ss_dssp             EEEECSSCSSCEEEEEECC--------SSCSSCCSEE-EEEEESCSSSC----TTTSE-----EEEEETTCCEEEECSCC
T ss_pred             EEEEccCCCCEEEEEECCC--------CCCCCceeEE-EEEEEeCCCCC----ccceE-----EEEECCCceEEEEcCCC
Confidence            66666  789999999965        4567899999 99998754332    01232     22234678999999999


Q ss_pred             cceeEEEEEeccccccccccCC
Q psy15127        612 KFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       612 ~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      |++.|.|+|+|.|..|.|++|+
T Consensus        78 p~t~Y~~~V~A~n~~G~g~~S~   99 (114)
T 2ede_A           78 LDTMYYFRIQARNSKGVGPLSD   99 (114)
T ss_dssp             SSCEEEEEEEEECSSCBCCCCC
T ss_pred             CCCEEEEEEEEEeCCcCcCCcc
Confidence            9999999999999999999985

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.32  E-value=5.4e-12  Score=101.28  Aligned_cols=85  Identities=22%  Similarity=0.281  Sum_probs=70.0

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCC---eEEccc---ceEEEccCCCCCCeEEEEEEEe
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR---AKILDD---RSLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~---~~~~~~---~~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                      ++.|...+.++.+.+|++++|.|.+.+ |.+.+.|+|++..+..+.   +.+..+   ..|.|.+++.+|+|.|+|.|.|
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n   85 (103)
T 1x44_A            7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG   85 (103)
T ss_dssp             SCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT
T ss_pred             CceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC
Confidence            344778888999999999999999977 678999999999886543   233332   5899999999999999999976


Q ss_pred             CCceEEEEEEEEEEee
Q psy15127        145 LVGSISLRASLTVHLL  160 (633)
Q Consensus       145 ~~g~~s~~~~l~V~~~  160 (633)
                          .+..+.|.|..+
T Consensus        86 ----~~~~~~l~V~~~   97 (103)
T 1x44_A           86 ----GQSSAKLSVDLK   97 (103)
T ss_dssp             ----EEEEEEEEEECC
T ss_pred             ----CcEEEEEEEeCC
Confidence                567788888876

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.32  E-value=2.2e-12  Score=119.50  Aligned_cols=109  Identities=17%  Similarity=0.289  Sum_probs=77.9

Q ss_pred             CceEEeeC---ceEEEcCCCC--CCeEEEEEEecC-----------------cCCeeeeCCCceEEEcCCeEEEEEEEec
Q psy15127         40 RRSRSIFG---SVLGARGALS--DDQWKLIAKEAL-----------------IKPFPISEPSDATVLSGSVVEFVCRVGG   97 (633)
Q Consensus        40 ~~~~~~~~---~~L~i~~v~~--~G~Y~C~a~~v~-----------------~~p~~~~~~~~~~~~~G~~~~L~C~~~~   97 (633)
                      .|+.+..+   .+|.|.+++.  +|.|+|.|.+..                 .+|.+...+......+|+.++|.|.+.+
T Consensus        61 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g  140 (216)
T 2xzc_L           61 DRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNN  140 (216)
T ss_dssp             TTEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEE
T ss_pred             CceEEeccCCEEEEEECCCCcccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEe
Confidence            46665432   3799999998  999999998711                 2344443332222335899999999987


Q ss_pred             -cCCC-eEEEEeCCccCCCC-CeEE----ccc------ceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         98 -DPLP-TILWRRDDGKMPTG-RAKI----LDD------RSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        98 -~p~p-~i~W~~~~~~i~~~-~~~~----~~~------~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                       .|.+ .|+|+|+|..+..+ ....    ..+      +.|.|.++..+|+|.|+|.|.|....
T Consensus       141 ~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (216)
T 2xzc_L          141 FYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  204 (216)
T ss_dssp             EBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             EcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCC
Confidence             4554 89999999988655 1111    111      26999999999999999999997654

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens}

Probab=99.32  E-value=4.1e-12  Score=116.04  Aligned_cols=180  Identities=12%  Similarity=0.075  Sum_probs=101.5

Q ss_pred             CCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEE--EEEeeeeceEEEec--CCCCCeEEEEEE
Q psy15127        412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVV--AAHRITSTSITVSD--LKPDTSYMFIVR  487 (633)
Q Consensus       412 ~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~--~~~~~~~~~~~i~~--L~p~~~Y~~~v~  487 (633)
                      +|.++.+...+-..+ |+|+++...   .+....|.|+|+..+ ...|..  .+..+..+.+.|++  +.++..|.+||+
T Consensus        10 ~P~nv~~~s~n~~~i-L~W~p~~~~---~~~~~~Y~Vqy~~~~-~~~W~~~~~C~~i~~~~Cdlt~~~~~~~~~Y~~RV~   84 (211)
T 3g9v_A           10 KPQRVQFQSRNFHNI-LQWQPGRAL---TGNSSVYFVQYKIYG-QRQWKNKEDCWGTQELSCDLTSETSDIQEPYYGRVR   84 (211)
T ss_dssp             CCEEEEEEEETTEEE-EEEECCCC------CCCEEEEEEEETT-CSSCEEEEEEEEECCSEEECTGGGCSTTSCEEEEEE
T ss_pred             CCceeEEEEEcCceE-EEECCCCCC---CCCCeEEEEEEEECC-CCceEECccCCCCCCCEECCCCcccccCccEEEEEE
Confidence            377777766665555 999999843   223678999999765 356764  44556667777864  478999999999


Q ss_pred             EEeccccCCCCCCCCceeec-CCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhh--
Q psy15127        488 AENSHGLGIPSPVSPITRTL-GLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARA--  564 (633)
Q Consensus       488 a~n~~G~g~~s~~~~~~~t~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~--  564 (633)
                      |.++.|.+.++.... +.+. ...+ .||.+                ++.... .+|.|.|++|    .....+.+|.  
T Consensus        85 A~~~~~~S~ws~~~~-f~~~~~t~i-~PP~v----------------~v~~~~-~si~V~~~~P----~~~~~~~ng~~~  141 (211)
T 3g9v_A           85 AASAGSYSEWSMTPR-FTPWWETKI-DPPVM----------------NITQVN-GSLLVILHAP----NLPYRYQKEKNV  141 (211)
T ss_dssp             EEETTEECCCEECCC-BCHHHHCBC-CCCEE----------------ECC------CCCEEECC----CCGGGGCSSCSS
T ss_pred             EECCCCcCCCEecCc-ccccccCcc-CCCEE----------------EEEEcC-CEEEEEEECC----CCccccCCCcee
Confidence            999999998865442 3232 2222 23333                555554 4999999965    1111112232  


Q ss_pred             ------hcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEecccc--ccccccCC
Q psy15127        565 ------RLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFK--TVEGARLD  633 (633)
Q Consensus       565 ------i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~--~g~g~~s~  633 (633)
                            ...| .|+|.+.+...        +    ..+ .......++|.+|+|++.|.|+|+|+..  ...|++|+
T Consensus       142 ~~~~~~~l~Y-~v~y~~~~~~~--------~----~~~-~~~~~~~~~i~~L~p~t~Ycv~V~a~~~~~~~~s~~S~  204 (211)
T 3g9v_A          142 SIEDYYELLY-RVFIINNSLEK--------E----QKV-YEGAHRAVEIEALTPHSSYCVVAEIYQPMLDRRSQRSE  204 (211)
T ss_dssp             CHHHHTTCEE-EEEEC--------------C----EEE-EEESSCCCC----------CEEEEEEETTTTEECCCCC
T ss_pred             eehhcceeEE-EEEEEECCCcc--------E----EEE-EecCCcEEEEecCCCCCeEEEEEEEEeCCCCCcCCCCC
Confidence                  4669 88887664432        0    111 1234678999999999999999999853  34566553

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.32  E-value=1.2e-11  Score=119.37  Aligned_cols=122  Identities=17%  Similarity=0.163  Sum_probs=83.9

Q ss_pred             CCceEEeeCc---eEEEcCCCC--CCeEEEEEEe-------------cCcC--------------CeeeeCCCceEEEcC
Q psy15127         39 SRRSRSIFGS---VLGARGALS--DDQWKLIAKE-------------ALIK--------------PFPISEPSDATVLSG   86 (633)
Q Consensus        39 ~~~~~~~~~~---~L~i~~v~~--~G~Y~C~a~~-------------v~~~--------------p~~~~~~~~~~~~~G   86 (633)
                      ..|+.+..++   +|.|.+++.  +|.|+|.+.|             |..+              +.++..|....+.+|
T Consensus        70 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G  149 (276)
T 3auv_A           70 PSRFSGSGSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPG  149 (276)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTT
T ss_pred             CCCEEEeccCCeEEEEEccCChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCC
Confidence            3466655433   799999998  9999999987             2221              123344567789999


Q ss_pred             CeEEEEEEEeccC--CCeEEEEeCC--ccC------------------CCCCeEEccc-----ceEEEccCCCCCCeEEE
Q psy15127         87 SVVEFVCRVGGDP--LPTILWRRDD--GKM------------------PTGRAKILDD-----RSLQIENVGPQDEGLYI  139 (633)
Q Consensus        87 ~~~~L~C~~~~~p--~p~i~W~~~~--~~i------------------~~~~~~~~~~-----~~L~i~~v~~~d~G~Y~  139 (633)
                      ++++|.|.+.+.+  .+.+.|+|++  ..+                  ..+++....+     ..|.|.+++.+|+|.|+
T Consensus       150 ~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~  229 (276)
T 3auv_A          150 GSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYY  229 (276)
T ss_dssp             CCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEE
T ss_pred             CeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEE
Confidence            9999999998766  5899999963  211                  1234443322     37999999999999999


Q ss_pred             EEEEeCC---ce--EEEEEEEEEEee
Q psy15127        140 CDVENLV---GS--ISLRASLTVHLL  160 (633)
Q Consensus       140 C~~~n~~---g~--~s~~~~l~V~~~  160 (633)
                      |.|.|..   +.  ......|.|...
T Consensus       230 C~a~n~~~~~~~~~fg~gt~l~V~~~  255 (276)
T 3auv_A          230 CARFVFFLPYAMDYWGQGTLVTVSSA  255 (276)
T ss_dssp             EEEECSSTTCSCCCBCCCEEEEEC--
T ss_pred             EEEEcCcCCcCceEECCCEEEEEccc
Confidence            9999973   21  223456666543

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.32  E-value=1.2e-11  Score=117.27  Aligned_cols=119  Identities=13%  Similarity=0.169  Sum_probs=86.4

Q ss_pred             CceEEeeC-----ceEEEcCCCC--CCeEEEEEEe--------------cCc---------------CCeeeeCCCceEE
Q psy15127         40 RRSRSIFG-----SVLGARGALS--DDQWKLIAKE--------------ALI---------------KPFPISEPSDATV   83 (633)
Q Consensus        40 ~~~~~~~~-----~~L~i~~v~~--~G~Y~C~a~~--------------v~~---------------~p~~~~~~~~~~~   83 (633)
                      .|+.+..+     .+|.|.+++.  +|.|+|.|.+              |..               ++.+...+..+.+
T Consensus        68 ~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  147 (247)
T 2ghw_B           68 GRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSL  147 (247)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEE
T ss_pred             CcEEEEEeCCCCEEEEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEe
Confidence            46666542     4799999998  9999999977              111               2345556667789


Q ss_pred             EcCCeEEEEEEEeccCCCeEEEEe--CCccCC-------------CCCeEEcc---cceEEEccCCCCCCeEEEEEEEeC
Q psy15127         84 LSGSVVEFVCRVGGDPLPTILWRR--DDGKMP-------------TGRAKILD---DRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        84 ~~G~~~~L~C~~~~~p~p~i~W~~--~~~~i~-------------~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      .+|++++|.|.+.+.+.+.++|+|  ++..+.             ..++....   ..+|+|.+++.+|+|.|+|.|.|.
T Consensus       148 ~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  227 (247)
T 2ghw_B          148 SPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSN  227 (247)
T ss_dssp             CTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSS
T ss_pred             cCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccC
Confidence            999999999999998888999999  555431             12333221   246999999999999999999875


Q ss_pred             Cce-EEEEEEEEEE
Q psy15127        146 VGS-ISLRASLTVH  158 (633)
Q Consensus       146 ~g~-~s~~~~l~V~  158 (633)
                      ... ......|.|.
T Consensus       228 ~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          228 WPPTFGQGTKVEVK  241 (247)
T ss_dssp             SSCEECCCEEEEEC
T ss_pred             CCceEcCCEEEEEC
Confidence            332 3344566665

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.32  E-value=4e-12  Score=120.97  Aligned_cols=121  Identities=16%  Similarity=0.137  Sum_probs=88.3

Q ss_pred             CceEEeeCc-----eEEEcCCCC--CCeEEEEEEe-------------cCc---------------CCeeeeCCCceEEE
Q psy15127         40 RRSRSIFGS-----VLGARGALS--DDQWKLIAKE-------------ALI---------------KPFPISEPSDATVL   84 (633)
Q Consensus        40 ~~~~~~~~~-----~L~i~~v~~--~G~Y~C~a~~-------------v~~---------------~p~~~~~~~~~~~~   84 (633)
                      .|+.+..++     +|.|.+++.  +|.|+|.+.+             +..               +|.+...|....+.
T Consensus        67 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~  146 (253)
T 3uzq_A           67 GKATITADTSSNTAYLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVS  146 (253)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEEC
T ss_pred             CcEEEEeecCCCeEEEEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEe
Confidence            466665432     399999998  9999999987             222               46677777788999


Q ss_pred             cCCeEEEEEEEeccCCC----eEEEEeCC--ccCC-------------CCCeEEcc---cceEEEccCCCCCCeEEEEEE
Q psy15127         85 SGSVVEFVCRVGGDPLP----TILWRRDD--GKMP-------------TGRAKILD---DRSLQIENVGPQDEGLYICDV  142 (633)
Q Consensus        85 ~G~~~~L~C~~~~~p~p----~i~W~~~~--~~i~-------------~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~~  142 (633)
                      +|++++|.|.+.+.+.+    .+.|+|++  ..+.             .+++....   ..+|+|.+++.+|+|.|+|.|
T Consensus       147 ~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~  226 (253)
T 3uzq_A          147 LGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQR  226 (253)
T ss_dssp             TTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEE
Confidence            99999999999988776    89999952  2211             12332221   246999999999999999999


Q ss_pred             EeCCce-EEEEEEEEEEee
Q psy15127        143 ENLVGS-ISLRASLTVHLL  160 (633)
Q Consensus       143 ~n~~g~-~s~~~~l~V~~~  160 (633)
                      .|..+. ......|.|...
T Consensus       227 ~n~~~~~fg~gt~l~v~~~  245 (253)
T 3uzq_A          227 SNEVPWTFGGGTKLEIKRP  245 (253)
T ss_dssp             CSSSSCCBCCCEEEEECCC
T ss_pred             ccCCCcEECCCEEEEEcCC
Confidence            886443 344566777765

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=9.7e-12  Score=100.43  Aligned_cols=100  Identities=30%  Similarity=0.399  Sum_probs=81.8

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRA  488 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a  488 (633)
                      .|++|..+.+.....+++.|+|.++.     ++.+.+|.|+|+..+....|... .......++|.+|.|++.|.|+|+|
T Consensus         7 ~P~~P~~~~~~~~~~~sv~l~W~~~~-----~~~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A   80 (106)
T 2dju_A            7 GPKPPIDLVVTETTATSVTLTWDSGN-----SEPVTYYGIQYRAAGTEGPFQEV-DGVATTRYSIGGLSPFSEYAFRVLA   80 (106)
T ss_dssp             SCCCCEEEEEEEEETTEEEEEEECCC-----SSCCSEEEEEEEETTCCSCCCCB-CCCCSSEEEEESCCTTCEEEEEEEE
T ss_pred             CCcCCCCcEEEeccCCEEEEEEcCCC-----CCCceEEEEEEEECCCCCCeEEc-cCCCccEEEEeCCCCCcEEEEEEEE
Confidence            46678888888889999999999884     46899999999987655556532 2234678999999999999999999


Q ss_pred             EeccccCCCCCCCCceeecCCCCCCCc
Q psy15127        489 ENSHGLGIPSPVSPITRTLGLNSLVPQ  515 (633)
Q Consensus       489 ~n~~G~g~~s~~~~~~~t~~~~p~~~~  515 (633)
                      .|..|.|.+|... .++|.+.+|..||
T Consensus        81 ~n~~G~~~~S~~~-~~~T~~~~P~~Pp  106 (106)
T 2dju_A           81 VNSIGRGPPSEAV-RARTGEQSGPSSG  106 (106)
T ss_dssp             ECSSCBCCCCCCE-EEECCCSSCCCCC
T ss_pred             EeCCccCCCcccE-EeEcCCCCCCCCC
Confidence            9999999998876 5788888777764

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.31  E-value=8.9e-12  Score=118.32  Aligned_cols=105  Identities=14%  Similarity=0.211  Sum_probs=76.2

Q ss_pred             CceEEeeC---ceEEEcCCCC--CCeEEEEEEe-------------cCc-------------------CCeeeeCCCceE
Q psy15127         40 RRSRSIFG---SVLGARGALS--DDQWKLIAKE-------------ALI-------------------KPFPISEPSDAT   82 (633)
Q Consensus        40 ~~~~~~~~---~~L~i~~v~~--~G~Y~C~a~~-------------v~~-------------------~p~~~~~~~~~~   82 (633)
                      .|+.+..+   .+|.|.+++.  +|.|.|.|.+             +..                   ++.+...+....
T Consensus        63 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (250)
T 3esu_F           63 SRFSGSGSGTDYSLTISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEL  142 (250)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEE
T ss_pred             CCEEEeCCCCEEEEEEccCChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceE
Confidence            45554432   2799999998  9999999976             222                   233455567788


Q ss_pred             EEcCCeEEEEEEEeccC--CCeEEEEeC--CccCC------------------CCCeEEccc-----ceEEEccCCCCCC
Q psy15127         83 VLSGSVVEFVCRVGGDP--LPTILWRRD--DGKMP------------------TGRAKILDD-----RSLQIENVGPQDE  135 (633)
Q Consensus        83 ~~~G~~~~L~C~~~~~p--~p~i~W~~~--~~~i~------------------~~~~~~~~~-----~~L~i~~v~~~d~  135 (633)
                      +.+|++++|.|.+.+.+  .+.+.|+|+  +..+.                  .+++....+     .+|+|.+++.+|+
T Consensus       143 v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~Ds  222 (250)
T 3esu_F          143 VKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDS  222 (250)
T ss_dssp             ECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             EcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccC
Confidence            99999999999998766  779999997  43321                  133333322     2699999999999


Q ss_pred             eEEEEEEEe
Q psy15127        136 GLYICDVEN  144 (633)
Q Consensus       136 G~Y~C~~~n  144 (633)
                      |.|+|.+.+
T Consensus       223 G~Y~C~~~~  231 (250)
T 3esu_F          223 AVYFCARSG  231 (250)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEec
Confidence            999999987

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=5.7e-12  Score=105.10  Aligned_cols=121  Identities=16%  Similarity=0.198  Sum_probs=87.6

Q ss_pred             EEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEE
Q psy15127        373 TCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFS  452 (633)
Q Consensus       373 ~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~  452 (633)
                      ++.|.|..|....+..+.+...+           ..++.+|..+.+...+.+++.|+|.+|.... .++.+.+|.|+|+.
T Consensus         3 ~V~A~n~~G~g~~s~~~~~~T~~-----------~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~-~~g~i~~Y~v~~~~   70 (124)
T 2ed9_A            3 SGSSGNRYGPGVSTDDITVVTLS-----------DVPSAPPQNVSLEVVNSRSIKVSWLPPPSGT-QNGFITGYKIRHRK   70 (124)
T ss_dssp             SCCCCCCCCCCCCCCCCCCCCCC-----------CCCSSCCBSCCEEEEETTEEEEECBCCCTTT-CCSCCCEEEEEEEE
T ss_pred             eEEEEeCCccCCCCCCEEEEcCC-----------CCCCCCCeeeEEEEcCCCEEEEEEECcCCcC-CCcEEeEEEEEEEE
Confidence            45677888865433333332221           1223367788888889999999999998632 25789999999998


Q ss_pred             ecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCceeecC
Q psy15127        453 SDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLG  508 (633)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~  508 (633)
                      .+... |... .......++|.+|.|++.|.|+|+|.|..|.|++|... .++|.+
T Consensus        71 ~~~~~-~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~-~~~T~e  123 (124)
T 2ed9_A           71 TTRRG-EMET-LEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWY-TAETPE  123 (124)
T ss_dssp             SSSSC-CEEE-ECSSCSEEEEECCCSSCEEEECEEEECSSCBCCCCCCE-EEECCC
T ss_pred             CCCCc-ceEE-ecCCcCEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCE-EEECCC
Confidence            76433 3322 34456889999999999999999999999999998776 455543

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.31  E-value=6.1e-12  Score=119.85  Aligned_cols=112  Identities=20%  Similarity=0.294  Sum_probs=81.5

Q ss_pred             ceEEEcCCCC--CCeEEEEEEe----------------cC--------------------cCCeeeeCCCceEEEcCCeE
Q psy15127         48 SVLGARGALS--DDQWKLIAKE----------------AL--------------------IKPFPISEPSDATVLSGSVV   89 (633)
Q Consensus        48 ~~L~i~~v~~--~G~Y~C~a~~----------------v~--------------------~~p~~~~~~~~~~~~~G~~~   89 (633)
                      .+|.|.+++.  +|.|+|.+.+                |.                    .+|.+...|....+.+|+++
T Consensus        76 ~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v  155 (256)
T 3tf7_C           76 FHLRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENV  155 (256)
T ss_dssp             EEEEESSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCE
T ss_pred             EEEEECCCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcE
Confidence            4699999998  9999999976                11                    14567777888888999999


Q ss_pred             EEEEEEeccCCCeEEEEeCCccCC------------------CCCeEEc----ccceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127         90 EFVCRVGGDPLPTILWRRDDGKMP------------------TGRAKIL----DDRSLQIENVGPQDEGLYICDVENLVG  147 (633)
Q Consensus        90 ~L~C~~~~~p~p~i~W~~~~~~i~------------------~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~n~~g  147 (633)
                      +|.|.+.+. .+.+.|+|+.....                  .+++...    ...+|+|.+++.+|+|.|+|.|.|..|
T Consensus       156 ~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g  234 (256)
T 3tf7_C          156 TLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPG  234 (256)
T ss_dssp             EECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETT
T ss_pred             EEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCC
Confidence            999999876 67899998432110                  1122221    134799999999999999999998766


Q ss_pred             eE--EEEEEEEEEee
Q psy15127        148 SI--SLRASLTVHLL  160 (633)
Q Consensus       148 ~~--s~~~~l~V~~~  160 (633)
                      ..  -....|.|...
T Consensus       235 ~~~fG~gt~l~v~~~  249 (256)
T 3tf7_C          235 QLYFGEGSKLTVLEL  249 (256)
T ss_dssp             EEEECCCEEEEEECG
T ss_pred             ccEECCCeEEEEEcc
Confidence            52  23345666543

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=1.1e-11  Score=100.71  Aligned_cols=101  Identities=27%  Similarity=0.388  Sum_probs=79.9

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEE-eeeeceEEEecCCCCCeEEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAH-RITSTSITVSDLKPDTSYMFIVR  487 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~~~Y~~~v~  487 (633)
                      .|++|..+.+.....+++.|+|.+|...+  +.++.+|.|+|+..+. ..|..... ....+.+++.+|.+++.|.|+|+
T Consensus         7 ~P~~P~~l~~~~~~~~sv~l~W~~p~~~g--~~~i~~Y~v~~~~~~~-~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~   83 (110)
T 2yuw_A            7 GTSPPTLLTVDSVTDTTVTMRWRPPDHIG--AAGLDGYVLEYCFEGT-EDWIVANKDLIDKTKFTITGLPTDAKIFVRVK   83 (110)
T ss_dssp             CSCCCEEEEEEEECSSCEEEEEECCSSCC--SSCEEEEEEEEEETTC-SSEEECCSSCCCSSEEEECSCCTTCEEEEEEE
T ss_pred             CCCCCCccEEEeccCCeEEEEECCCCCCC--CCCccEEEEEEEECCC-ccceEeccccCccCEEEECCCCCCCEEEEEEE
Confidence            46777778888888999999999988653  5689999999998653 56765422 23567899999999999999999


Q ss_pred             EEeccccCCCCCCCCceeecCCCCC
Q psy15127        488 AENSHGLGIPSPVSPITRTLGLNSL  512 (633)
Q Consensus       488 a~n~~G~g~~s~~~~~~~t~~~~p~  512 (633)
                      |.|..|.|++|.....+++.+..|.
T Consensus        84 A~n~~G~s~~S~~~~~v~~~~~~P~  108 (110)
T 2yuw_A           84 AVNAAGASEPKYYSQPILVKESGPS  108 (110)
T ss_dssp             EEETTEECCCEECSSCEECCCCCCC
T ss_pred             EEcCCcCCCCcCCCCCEEecCCCCC
Confidence            9999999999877655656555443

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.31  E-value=8.8e-12  Score=113.93  Aligned_cols=96  Identities=15%  Similarity=0.149  Sum_probs=73.5

Q ss_pred             CceEEEcCCCC--CCeEEEEEEe-----------------c---CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEE
Q psy15127         47 GSVLGARGALS--DDQWKLIAKE-----------------A---LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTIL  104 (633)
Q Consensus        47 ~~~L~i~~v~~--~G~Y~C~a~~-----------------v---~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~  104 (633)
                      ++.|.|.+++.  +|.|+|.+.+                 +   ..+|.+...|. ..+.+|++++|.|.+.+ +.+.+.
T Consensus        62 ~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~  139 (201)
T 1nkr_A           62 KANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYH  139 (201)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEE
T ss_pred             eEEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEE
Confidence            47799999998  9999999964                 1   12456665554 46899999999999875 567899


Q ss_pred             EEeCCccCCCCC-eEE-c---ccceEEEccCCCCCCeEEEEEEEeCC
Q psy15127        105 WRRDDGKMPTGR-AKI-L---DDRSLQIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus       105 W~~~~~~i~~~~-~~~-~---~~~~L~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      |+|+|..+.... ... .   ....|.|.+++  |+|.|+|.|.+..
T Consensus       140 w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          140 LSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             EEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred             EEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence            999998775321 111 1   14689999998  9999999998653

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=3.2e-12  Score=104.01  Aligned_cols=81  Identities=16%  Similarity=0.061  Sum_probs=64.8

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.+++.|+|++|      . .++++.|++| .|+|+..+...       |......    ....+.++|.+|+++
T Consensus        15 ~~~~~~~~sv~l~W~~p------~-~~g~~~i~~Y-~v~~~~~~~~~-------w~~~~~~----~~~~~~~~v~~L~p~   75 (110)
T 2yuw_A           15 TVDSVTDTTVTMRWRPP------D-HIGAAGLDGY-VLEYCFEGTED-------WIVANKD----LIDKTKFTITGLPTD   75 (110)
T ss_dssp             EEEEECSSCEEEEEECC------S-SCCSSCEEEE-EEEEEETTCSS-------EEECCSS----CCCSSEEEECSCCTT
T ss_pred             EEEeccCCeEEEEECCC------C-CCCCCCccEE-EEEEEECCCcc-------ceEeccc----cCccCEEEECCCCCC
Confidence            78888999999999965      1 2345679999 99999876543       7644321    235789999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|.|..|.|++|+
T Consensus        76 t~Y~frV~A~n~~G~s~~S~   95 (110)
T 2yuw_A           76 AKIFVRVKAVNAAGASEPKY   95 (110)
T ss_dssp             CEEEEEEEEEETTEECCCEE
T ss_pred             CEEEEEEEEEcCCcCCCCcC
Confidence            99999999999999999874

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=2.1e-12  Score=102.20  Aligned_cols=84  Identities=27%  Similarity=0.501  Sum_probs=70.0

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCce-
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS-  148 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-  148 (633)
                      .+|.+...|....+.+|+.++|.|.+.+.|.+.+.|+|++..+...     .+..|.|.+++.+|+|.|+|.|.|..+. 
T Consensus         9 ~~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~   83 (96)
T 2ens_A            9 EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP-----PSPVLILPEIGPQDQGTYSCVATHSSHGP   83 (96)
T ss_dssp             CSCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSC-----CCSEEEEESCCTTTCEEEECEECCSSCCC
T ss_pred             CCCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCC-----CCCEEEECCCCcccCEEEEEEEEeCCCCc
Confidence            4577888888889999999999999999999999999999887653     2468999999999999999999996554 


Q ss_pred             -EEEEEEEEEE
Q psy15127        149 -ISLRASLTVH  158 (633)
Q Consensus       149 -~s~~~~l~V~  158 (633)
                       .+..+.|.|.
T Consensus        84 ~~s~~~~v~V~   94 (96)
T 2ens_A           84 QESRAVSISII   94 (96)
T ss_dssp             EECCCEEEEEC
T ss_pred             EEEEEEEEEEe
Confidence             3445555554

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.31  E-value=4.5e-12  Score=103.85  Aligned_cols=84  Identities=13%  Similarity=0.100  Sum_probs=65.2

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.++|.|+|++|      .....++.|++| .|+|+..+....    ..|.   .  ..+.+..++++|.+|+|+
T Consensus        16 ~~~~~~~~si~l~W~~p------~~~~~~g~i~gY-~v~y~~~~~~~~----~~~~---~--~~~~~~~~~~~i~~L~p~   79 (114)
T 1x4y_A           16 FTDAVNETTIMLKWMYI------PASNNNTPIHGF-YIYYRPTDSDND----SDYK---K--DMVEGDRYWHSISHLQPE   79 (114)
T ss_dssp             EEECSSSSCEEEEEECC------CTTSCCCCCCEE-EEEECCTTSCSG----GGCC---C--EEEETTCCEEEECSCCTT
T ss_pred             EEEecCCCEEEEEEeCC------CchhcCCccceE-EEEEEECCCCCC----ccee---e--EecCCcEeEEEcCCCCCC
Confidence            78888999999999954      223578999999 999987755410    0121   1  122355688999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|+|.+|+|++|+
T Consensus        80 t~Y~~~V~A~n~~G~g~~S~   99 (114)
T 1x4y_A           80 TSYDIKMQCFNEGGESEFSN   99 (114)
T ss_dssp             CEEEEEEEEECTTCCCCCCC
T ss_pred             CEEEEEEEEEcCCccCCCcC
Confidence            99999999999999999985

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.30  E-value=6e-12  Score=102.95  Aligned_cols=92  Identities=24%  Similarity=0.425  Sum_probs=69.9

Q ss_pred             hCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccce
Q psy15127        525 LGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTS  604 (633)
Q Consensus       525 ~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  604 (633)
                      +....+.+..+..+++++|.|+|+++         ..++.|+|| .|.|+..+....   ...|...   .+ ..+..++
T Consensus        14 l~~~~v~l~~~~a~sstsi~vsW~~~---------~~~g~i~gY-~V~Y~~~~~~~~---~~~~~~~---~v-~~~~~~~   76 (120)
T 1ujt_A           14 LGDVLVRLHNPVVLTPTTVQVTWTVD---------RQPQFIQGY-RVMYRQTSGLQA---TSSWQNL---DA-KVPTERS   76 (120)
T ss_dssp             HHHCCEEECCCCCCBTTEEEEEEEES---------SCCSSCCEE-EEEEEESSSSST---TTCCEEE---EC-CCTTCCE
T ss_pred             ecccEEEeeccEEccCceEEEEEccC---------CCCCcEeeE-EEEEEECCCCCC---CCccEEE---Ee-cCCCcCE
Confidence            33445556678889999999999943         457899999 999998865210   0124311   12 2445789


Q ss_pred             EEeeccccceeEEEEEeccccccccccCC
Q psy15127        605 YTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       605 ~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      ++|.+|+|++.|.|+|+|+|..|+|++|+
T Consensus        77 ~~l~~L~p~T~Y~~~V~A~n~~G~Gp~S~  105 (120)
T 1ujt_A           77 AVLVNLKKGVTYEIKVRPYFNEFQGMDSE  105 (120)
T ss_dssp             EEEESCCSSEEEEEEEEEESSSCCCCCCC
T ss_pred             EEECCCCCCCEEEEEEEEECCCccCCCCC
Confidence            99999999999999999999999999985

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.30  E-value=1.5e-11  Score=100.50  Aligned_cols=85  Identities=21%  Similarity=0.372  Sum_probs=72.0

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEcccc---eEEEccCCCCCCeEEEEEEEeC
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDDR---SLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~~~---~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      .+|.|...+....+.+|+++.|.|.+.+.  |.++|+|++..+..+ +..+..++   .|.|.+++.+|+|.|+|.|   
T Consensus        18 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a---   92 (113)
T 2edh_A           18 LPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC---   92 (113)
T ss_dssp             SCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTCEEEEEEE---
T ss_pred             CCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhhCEEEEEEe---
Confidence            45688888899999999999999999764  789999999988754 44444444   7999999999999999999   


Q ss_pred             CceEEEEEEEEEEee
Q psy15127        146 VGSISLRASLTVHLL  160 (633)
Q Consensus       146 ~g~~s~~~~l~V~~~  160 (633)
                       +..+..+.|.|..+
T Consensus        93 -~~~~~~~~l~V~~~  106 (113)
T 2edh_A           93 -GKERTSAMLTVRAM  106 (113)
T ss_dssp             -TTEEEEEEEEECCC
T ss_pred             -CCCCEEEEEEEeCC
Confidence             66788899999887

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.30  E-value=7.5e-12  Score=117.17  Aligned_cols=180  Identities=18%  Similarity=0.219  Sum_probs=88.2

Q ss_pred             eEEEEEEEeCCceEEEEEEEEEEeeccccccCCCceE-EecCCcEEEEEeCCCCC--C-CCeEEEEECCEEeccCCCeeE
Q psy15127        136 GLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTR-VASGETALLECGPPKGQ--P-EPTLHWKKNGQFIDLESSKSL  211 (633)
Q Consensus       136 G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~-~~~g~~~~l~C~~~~~~--p-~~~i~W~~~~~~~~~~~~~~~  211 (633)
                      |.|.|.+.+..+.  ......+..| ..+...|.... +..|+.+.|.|.+....  | ..+|.|+++|..+........
T Consensus         1 ~~~~~~~~~~~~~--c~~~~~~~~P-~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~   77 (240)
T 4acp_A            1 GTKSCDKTHTCPP--CPAPELLGGP-SVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR   77 (240)
T ss_dssp             ------------------------C-EEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCC
T ss_pred             CceeeeeeecCCC--CCccccCCCC-EEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccc
Confidence            7899999887654  2222111222 33344555555 56799999999965545  4 348999999998854211111


Q ss_pred             -Eeccce------eeeEE----EeeeEEEEeecCCCCCCcc-c------ccccceeEEec------CCceEEEEEEEeee
Q psy15127        212 -DLSRRT------LGWLR----VRPLYWNVARPRANLNPRY-I------GRKMASLLIWN------HPRVNRLSCFAEGS  267 (633)
Q Consensus       212 -~~~~~~------~~~~~----~~g~y~C~a~~~~~~~p~~-~------~~~~~~~~~~~------~g~~~~l~C~~~g~  267 (633)
                       ...+..      +.+..    ..+.|+|.+.+.....+.. .      ....+...+..      .|+.++|.|.+.|.
T Consensus        78 ~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf  157 (240)
T 4acp_A           78 EEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGF  157 (240)
T ss_dssp             EEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEE
T ss_pred             eECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEE
Confidence             011111      11111    1368999999987632211 0      11111222211      26889999999995


Q ss_pred             -cCC-eeEEEECCEEEEeccCCccceEEEccCc------eEEEcCCCCCCCeEEEEEEEeCC
Q psy15127        268 -PLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEG------TLRIQGVQKEDAGFFVCSALSVA  321 (633)
Q Consensus       268 -p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~G~Y~C~a~n~~  321 (633)
                       |.+ .+.|+++|..+...   .........++      .|.|.....+|.|.|+|.|.+..
T Consensus       158 ~P~~i~v~W~k~g~~~~~~---~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~  216 (240)
T 4acp_A          158 YPSDIAVEWESNGQPENNY---KATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA  216 (240)
T ss_dssp             BSSCCEEEEEETTEECSSE---EECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             eCCCcEEEEEECCEECCCc---CccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECC
Confidence             443 89999999875311   11111112222      45666555567899999998864

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=4.8e-12  Score=101.64  Aligned_cols=86  Identities=24%  Similarity=0.337  Sum_probs=72.2

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEccc---ceEEEccCCCCCCeEEEEEEEeC
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDD---RSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~~---~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      .+|.|...+.+..+.+|+.++|.|.+.+ |.+.+.|+|++..+..+ +..+..+   ..|.|.+++.+|+|.|+|.|.| 
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n-   84 (103)
T 2edf_A            7 GPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA-   84 (103)
T ss_dssp             CCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS-
T ss_pred             CCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc-
Confidence            4678888999999999999999999987 78899999999988654 4433333   3699999999999999999988 


Q ss_pred             CceEEEEEEEEEEee
Q psy15127        146 VGSISLRASLTVHLL  160 (633)
Q Consensus       146 ~g~~s~~~~l~V~~~  160 (633)
                         .+..+.|.|..+
T Consensus        85 ---~~~~~~l~V~~~   96 (103)
T 2edf_A           85 ---SKSTASLHVEEK   96 (103)
T ss_dssp             ---CEEEEEEEECCC
T ss_pred             ---CCcEEEEEEeCC
Confidence               367788888876

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.30  E-value=4.3e-12  Score=120.34  Aligned_cols=111  Identities=14%  Similarity=0.229  Sum_probs=75.8

Q ss_pred             CceEEEcCCCC--CCeEEEEEEe------------cCcCCeeeeCCCceEEEcCCeEEEEEEEec-cCCC-eEEEEeCCc
Q psy15127         47 GSVLGARGALS--DDQWKLIAKE------------ALIKPFPISEPSDATVLSGSVVEFVCRVGG-DPLP-TILWRRDDG  110 (633)
Q Consensus        47 ~~~L~i~~v~~--~G~Y~C~a~~------------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~-~p~p-~i~W~~~~~  110 (633)
                      +.+|.|.+++.  +|.|+|.+.+            |..+|.+...+.. .+..|+.+.|.|.+.+ .|.+ .|+|+|++.
T Consensus        81 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~~-~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~  159 (248)
T 3pv7_A           81 DASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQ-VGMKENEDKYMCESSGFYPEAINITWEKQTQ  159 (248)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECS
T ss_pred             cEEEEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecCC-ccccCCCcEEEEEEccEECCCeEEEEEECCc
Confidence            34599999998  9999999988            5567777665553 3556788889999998 7888 999999997


Q ss_pred             cCCCCC----------------eEEcccceEEEccCCCCCCeEEEEEEEeCCce--EEEEEEEEEE
Q psy15127        111 KMPTGR----------------AKILDDRSLQIENVGPQDEGLYICDVENLVGS--ISLRASLTVH  158 (633)
Q Consensus       111 ~i~~~~----------------~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~--~s~~~~l~V~  158 (633)
                      .+....                ........|.|.....+|.|.|+|.|.|..+.  .+..+.|.|.
T Consensus       160 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V~  225 (248)
T 3pv7_A          160 KFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAA  225 (248)
T ss_dssp             SSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC---
T ss_pred             cCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEEc
Confidence            654220                01111246889999999999999999998876  5666677773

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.30  E-value=1.1e-11  Score=101.22  Aligned_cols=89  Identities=27%  Similarity=0.484  Sum_probs=73.2

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEecc--CCCeEEEEeCCccCCCCCe----EEc-c-------cceEEEccCCCCC
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGD--PLPTILWRRDDGKMPTGRA----KIL-D-------DRSLQIENVGPQD  134 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~--p~p~i~W~~~~~~i~~~~~----~~~-~-------~~~L~i~~v~~~d  134 (633)
                      ..+|.+...|....+.+|+.++|.|.+.+.  +.+.+.|+|++..+.....    ... .       .+.|.|.+++.+|
T Consensus         8 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   87 (112)
T 3so5_A            8 FPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTS   87 (112)
T ss_dssp             CCSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGG
T ss_pred             CCCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEecccccc
Confidence            568899999999999999999999999854  4578999999998865431    111 1       3689999999999


Q ss_pred             CeEEEEEEEeCCce-EEEEEEEEE
Q psy15127        135 EGLYICDVENLVGS-ISLRASLTV  157 (633)
Q Consensus       135 ~G~Y~C~~~n~~g~-~s~~~~l~V  157 (633)
                      +|.|+|.|.|..|. .+..+.|.|
T Consensus        88 ~G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           88 EGXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCeEEEEEEeCCCcEEEeEEEEEe
Confidence            99999999999988 457777766

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=2.4e-11  Score=98.50  Aligned_cols=95  Identities=20%  Similarity=0.294  Sum_probs=76.4

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecC--CCCeEEEEEeeeeceEEEecCCCCCeEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDL--QTGWVVAAHRITSTSITVSDLKPDTSYMFIV  486 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v  486 (633)
                      .|++|..+++...+.+++.|+|.+|...   ++.|.+|.|+|+..+.  ...|..  .....+.++|.+|.|++.|.|+|
T Consensus         7 ~P~~p~~l~~~~~~~~sv~l~W~~p~~~---~g~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~~~i~~L~p~t~Y~~~V   81 (109)
T 2e7h_A            7 GPPAVSDIRVTRSSPSSLSLAWAVPRAP---SGAVLDYEVKYHEKGAEGPSSVRF--LKTSENRAELRGLKRGASYLVQV   81 (109)
T ss_dssp             SSCCCCCCEEEEEETTEEEEECCCCCCS---SSCCCEEEEEEEETTCCSTTTSEE--EEESSSEEEEESCCTTSCEEEEE
T ss_pred             CCCCCCccEEEecCCCEEEEEeCCCCCC---CCcEeEEEEEEEECCCCCCceeEE--EccCCCEEEECCCCCCCeEEEEE
Confidence            4677889999999999999999999733   5789999999998752  223433  23356789999999999999999


Q ss_pred             EEEeccccCCCCCCCCceeecCC
Q psy15127        487 RAENSHGLGIPSPVSPITRTLGL  509 (633)
Q Consensus       487 ~a~n~~G~g~~s~~~~~~~t~~~  509 (633)
                      +|.|..|.|++|... .++|...
T Consensus        82 ~A~n~~G~g~~S~~~-~~~T~~~  103 (109)
T 2e7h_A           82 RARSEAGYGPFGQEH-HSQTQLD  103 (109)
T ss_dssp             EEECSSCBCCCCSCE-ECCCCCC
T ss_pred             EEEeCCccCCCCCCE-EEEcCCC
Confidence            999999999999876 4566543

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=3.9e-12  Score=104.44  Aligned_cols=92  Identities=20%  Similarity=0.287  Sum_probs=74.6

Q ss_pred             CeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCC-eEEc----ccceEEEccCCCCCCeEEEEEEEeCC
Q psy15127         72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR-AKIL----DDRSLQIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus        72 p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~-~~~~----~~~~L~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      +.|...+.+..+.+|++++|.|.+.+.|.|.++|+|++..+..+. ..+.    ....|.|.+++.+|+|.|+|.+    
T Consensus        14 ~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~----   89 (115)
T 2cr6_A           14 VHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----   89 (115)
T ss_dssp             CEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEE----
T ss_pred             CeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEE----
Confidence            478888899999999999999999999999999999999886543 2222    1247999999999999999994    


Q ss_pred             ceEEEEEEEEEEeeccccccCC
Q psy15127        147 GSISLRASLTVHLLRDDFRAEP  168 (633)
Q Consensus       147 g~~s~~~~l~V~~~~p~~~~~~  168 (633)
                      |.....+.|.|..+ |.+...+
T Consensus        90 g~~~~~~~L~V~~~-p~~~~~~  110 (115)
T 2cr6_A           90 GDQRASAALRVTEK-PSVFSRS  110 (115)
T ss_dssp             TTEECCEEEEEECC-SSCCSSS
T ss_pred             CCeeEEEEEEEECC-CceeccC
Confidence            66777789999987 5544333

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.30  E-value=1.3e-11  Score=98.47  Aligned_cols=86  Identities=20%  Similarity=0.216  Sum_probs=71.3

Q ss_pred             cCCeeeeCCCc-eEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEccc---ceEEEccCCCCCCeEEEEEEEe
Q psy15127         70 IKPFPISEPSD-ATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDD---RSLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus        70 ~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~~---~~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                      .+|.|...+.+ ..+.+|+.++|.|.+. .|.+.+.|+|++..+..+ +..+..+   ..|.|.+++.+|+|.|+|.|  
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a--   82 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA--   82 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE--
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE--
Confidence            46888888877 6788999999999998 788999999999988654 4333332   36999999999999999999  


Q ss_pred             CCceEEEEEEEEEEee
Q psy15127        145 LVGSISLRASLTVHLL  160 (633)
Q Consensus       145 ~~g~~s~~~~l~V~~~  160 (633)
                        |..+..+.|.|..+
T Consensus        83 --g~~~~~~~l~V~~~   96 (100)
T 2yuv_A           83 --GDEKCSTELFVRSG   96 (100)
T ss_dssp             --TTEEEEEEEEECCS
T ss_pred             --CCceEEEEEEEecC
Confidence              66778888999876

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.30  E-value=7e-11  Score=97.09  Aligned_cols=100  Identities=27%  Similarity=0.396  Sum_probs=81.5

Q ss_pred             CCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEE
Q psy15127        408 LFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVR  487 (633)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~  487 (633)
                      ..|++|..+.+...+.+++.|+|.++...   ++.+.+|.|+|+..+.. .|.  ......+.++|.+|.|++.|.|+|+
T Consensus        16 ~~P~~P~~l~~~~~~~~si~l~W~~p~~~---~~~i~~Y~v~~~~~~~~-~~~--~~~~~~~~~~i~~L~p~t~Y~~~V~   89 (116)
T 1x5g_A           16 QLPGPAPNLRAYAASPTSITVTWETPVSG---NGEIQNYKLYYMEKGTD-KEQ--DVDVSSHSYTINGLKKYTEYSFRVV   89 (116)
T ss_dssp             SCCCCCSSCEEEEEETTEEEEECCCCSCC---SSCCSEEEEEEEETTCC-CCC--CEEECSSEEEECSCCTTCEEEEEEE
T ss_pred             CCCcCCCccEEEecCCCEEEEEEeCCCCC---CCcccEEEEEEEECCCC-ccE--EEecCCceEEEcCCCCCCEEEEEEE
Confidence            35678889999999999999999999743   57899999999987543 332  2334578899999999999999999


Q ss_pred             EEeccccCCCCCCCCceeecCCCCCCC
Q psy15127        488 AENSHGLGIPSPVSPITRTLGLNSLVP  514 (633)
Q Consensus       488 a~n~~G~g~~s~~~~~~~t~~~~p~~~  514 (633)
                      |.|..|.|.+|... .++|....|.++
T Consensus        90 A~n~~G~g~~S~~~-~~~T~~~~P~p~  115 (116)
T 1x5g_A           90 AYNKHGPGVSTPDV-AVRTLSDSGPSS  115 (116)
T ss_dssp             EECSSCCCCBCCCC-CEECCCSSCCCC
T ss_pred             EEcCCCcCCCCCCE-EEECCCCCCCCC
Confidence            99999999999877 578877766554

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.29  E-value=2.3e-12  Score=103.98  Aligned_cols=76  Identities=11%  Similarity=0.003  Sum_probs=62.3

Q ss_pred             cccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEE
Q psy15127        538 TASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYE  617 (633)
Q Consensus       538 ~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~  617 (633)
                      .+.++++|+|.++        .+++.+|++| +|+|+..+...       |....    ...+..++++|.+|+|++.|+
T Consensus        19 ~~~~sv~L~W~p~--------~dggsPI~~Y-~I~yr~~~~~~-------w~~~~----~~~~~~~~~~l~~L~p~t~Y~   78 (114)
T 2kbg_A           19 SSGKSFKLSITKQ--------DDGGAPILEY-IVKYRSKDKED-------QWLEK----KVQGNKDHIILEHLQWTMGYE   78 (114)
T ss_dssp             CSTTCEEEEECCC--------CCSSSCCSEE-EEEEEESSCCS-------CCEEE----EEETTTCCEEECCCCTTCCEE
T ss_pred             cCCCEEEEEEECC--------CCCCCcccEE-EEEEEeCCCCC-------cEEeE----EcCCCcCEEEEcCCCCCCEEE
Confidence            5799999999954        5688999999 99999985543       43221    123567889999999999999


Q ss_pred             EEEeccccccccccCC
Q psy15127        618 FFLVPFFKTVEGARLD  633 (633)
Q Consensus       618 ~~v~a~n~~g~g~~s~  633 (633)
                      |+|.|.|..|.|.||.
T Consensus        79 frV~A~N~~G~s~pS~   94 (114)
T 2kbg_A           79 VQITAANRLGYSEPTV   94 (114)
T ss_dssp             EEEEEECTTSCEEEEE
T ss_pred             EEEEEEeCCcCcCCcC
Confidence            9999999999999873

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.29  E-value=1e-11  Score=118.30  Aligned_cols=107  Identities=19%  Similarity=0.279  Sum_probs=75.3

Q ss_pred             CceEEeeC---ceEEEcCCCC--CCeEEEEEEe---------------cCcCC--------------------eeeeCCC
Q psy15127         40 RRSRSIFG---SVLGARGALS--DDQWKLIAKE---------------ALIKP--------------------FPISEPS   79 (633)
Q Consensus        40 ~~~~~~~~---~~L~i~~v~~--~G~Y~C~a~~---------------v~~~p--------------------~~~~~~~   79 (633)
                      .|+.+..+   .+|.|.+++.  +|.|+|.+.+               |..++                    ..+..+.
T Consensus        63 ~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (256)
T 3ux9_B           63 DRFSGSKSGTSASLAITGLQSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESG  142 (256)
T ss_dssp             TTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEEC
T ss_pred             CcEEEEccCCEEEEEECCCChhhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCC
Confidence            46655443   2699999998  9999999986               22222                    1233344


Q ss_pred             ceEEEcCCeEEEEEEEeccC--CCeEEEEeCC--ccC------------------CCCCeEEcc-----cceEEEccCCC
Q psy15127         80 DATVLSGSVVEFVCRVGGDP--LPTILWRRDD--GKM------------------PTGRAKILD-----DRSLQIENVGP  132 (633)
Q Consensus        80 ~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~--~~i------------------~~~~~~~~~-----~~~L~i~~v~~  132 (633)
                      ...+.+|++++|.|.+.+.+  .+.+.|+|+.  ..+                  ..+++....     ..+|+|.+++.
T Consensus       143 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~  222 (256)
T 3ux9_B          143 GGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRA  222 (256)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CeEEcCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCCh
Confidence            55689999999999998766  6789999963  221                  012333322     23599999999


Q ss_pred             CCCeEEEEEEEeCC
Q psy15127        133 QDEGLYICDVENLV  146 (633)
Q Consensus       133 ~d~G~Y~C~~~n~~  146 (633)
                      +|+|.|+|.|.|..
T Consensus       223 ~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          223 EDTAVYYCARYIDF  236 (256)
T ss_dssp             GGCEEEEEEEEETT
T ss_pred             hhCEEEEEEEEcCC
Confidence            99999999999863

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.29  E-value=1.4e-11  Score=100.95  Aligned_cols=87  Identities=17%  Similarity=0.135  Sum_probs=71.6

Q ss_pred             eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc---cCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                      ....+..|+.+.|.|.+.|.|.+.+.|++++..+..     ..++.+.   ....|.|.++..+|+|.|+|.|.|..|..
T Consensus        15 ~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~-----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~   89 (114)
T 2cqv_A           15 EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQE-----SEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSR   89 (114)
T ss_dssp             CSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCC-----SSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEE
T ss_pred             CCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcC-----CCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCCcE
Confidence            445678899999999999999999999999987642     1233332   24579999999999999999999999999


Q ss_pred             EEEEEEEEEecccCC
Q psy15127        325 TVRAFLQVREFCVLP  339 (633)
Q Consensus       325 ~~~~~l~v~~~~~~p  339 (633)
                      +..+.|.|.+.+..|
T Consensus        90 ~~~~~l~V~~~p~~P  104 (114)
T 2cqv_A           90 QAQVNLTVVDKPDPP  104 (114)
T ss_dssp             ECCEEEEEECSCSCC
T ss_pred             EEEEEEEEECCCCCC
Confidence            999999998765544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	633
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	8e-17
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-16
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	5e-09
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-04
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	3e-16
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	7e-16
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	3e-15
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	4e-08
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	0.001
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	4e-15
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	6e-07
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	0.003
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	5e-15
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	2e-14
d2crza1	97	b.1.2.1 (A:8-104) Fibronectin type-III domain cont	2e-14
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-14
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	3e-09
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	7e-04
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	8e-04
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	4e-14
d1x5ya1	98	b.1.2.1 (A:8-105) Myosin binding protein C, fast-t	7e-14
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	7e-14
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	2e-09
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	7e-06
d1x5xa1	96	b.1.2.1 (A:8-103) Fibronectin type-III domain cont	8e-14
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	8e-14
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	9e-09
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	4e-05
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	1e-13
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	2e-13
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	6e-08
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	2e-06
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	2e-13
d1wisa1	111	b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens)	3e-13
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	5e-13
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	7e-13
d1bpva_	104	b.1.2.1 (A:) Type I titin module {Human (Homo sapi	8e-13
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	9e-13
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	8e-07
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-05
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	1e-12
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	1e-12
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	1e-05
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	4e-05
d2ic2a1	107	b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit	2e-12
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	3e-12
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	4e-12
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	4e-12
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	4e-07
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	8e-12
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	1e-05
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	0.002
d1cfba2	105	b.1.2.1 (A:710-814) Neuroglian, two amino proximal	9e-12
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-11
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-09
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	3e-04
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-11
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-05
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	0.001
d1iarb2	101	b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch	3e-11
d2crma1	107	b.1.2.1 (A:8-114) Fibronectin type-III domain cont	3e-11
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	4e-11
d1ueya_	127	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	4e-11
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	4e-11
d1cd9b1	107	b.1.2.1 (B:1-107) Granulocyte colony-stimulating f	5e-11
d1n26a3	104	b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c	6e-11
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	7e-11
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	8e-07
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	0.003
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	8e-11
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	4e-05
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	0.004
d1cfba1	100	b.1.2.1 (A:610-709) Neuroglian, two amino proximal	8e-11
d1uc6a_	109	b.1.2.1 (A:) Ciliary neurotrophic factor receptor	9e-11
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	1e-10
d1tdqa2	92	b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu	2e-10
d1f6fb2	103	b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattu	2e-10
d1wfua_	120	b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat	2e-10
d1fnha3	89	b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod	2e-10
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	2e-10
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	7e-04
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	3e-10
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	7e-09
d2gysa2	114	b.1.2.1 (A:104-217) Common beta-chain in the GM-CS	3e-10
d1j8ka_	94	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	3e-10
d2b5ib2	104	b.1.2.1 (B:104-207) Interleukin-2 receptor beta ch	4e-10
d1x5ja1	100	b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [	6e-10
d1x4xa1	93	b.1.2.1 (A:8-100) Fibronectin type-III domain cont	7e-10
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	7e-10
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	5e-05
d2djsa1	95	b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human	1e-09
d1k85a_	88	b.1.2.1 (A:) Fibronectin type III domain from chit	1e-09
d1bqua1	95	b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-	1e-09
d2gysa4	100	b.1.2.1 (A:317-416) Common beta-chain in the GM-CS	1e-09
d1fnfa3	89	b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m	1e-09
d1x5aa1	94	b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse	1e-09
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	1e-09
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-09
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	5e-05
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	0.002
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	2e-09
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	9e-06
d1fnfa2	91	b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m	2e-09
d1wfta_	123	b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus	2e-09
d2b5ic1	95	b.1.2.1 (C:130-224) Cytokine receptor common gamma	3e-09
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	3e-09
d2vkwa2	93	b.1.2.1 (A:601-693) Neural cell adhesion molecule	7e-09
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	8e-09
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	5e-04
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	0.002
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	9e-09
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	3e-05
d1qr4a2	88	b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu	1e-08
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	1e-08
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	4e-05
d1x4ya1	101	b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {	2e-08
d2cuma1	93	b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens)	2e-08
d1qg3a2	103	b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum	2e-08
d1fnha2	90	b.1.2.1 (A:93-182) Fibronectin, different Fn3 modu	2e-08
d1fnha1	90	b.1.2.1 (A:3-92) Fibronectin, different Fn3 module	2e-08
d1tena_	90	b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId	2e-08
d1fnaa_	91	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	3e-08
d1qr4a1	87	b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus)	3e-08
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	3e-08
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	1e-04
d1tdqa3	86	b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic	4e-08
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	4e-08
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	5e-04
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	5e-08
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	5e-04
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	5e-08
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	7e-04
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	7e-08
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	3e-06
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	0.001
d1axib2	106	b.1.2.1 (B:131-236) Growth hormone receptor {Human	1e-07
d1qg3a1	92	b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum	1e-07
d2fnba_	95	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	1e-07
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	2e-07
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	3e-04
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	5e-04
d1fyhb1	98	b.1.2.1 (B:12-109) Interferon-gamma receptor alpha	2e-07
d3d48r2	104	b.1.2.1 (R:101-204) Prolactin receptor {Human (Hom	2e-07
d1tdqa1	93	b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus)	3e-07
d1ujta_	120	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	3e-07
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	4e-07
d2haza1	101	b.1.2.1 (A:489-589) Neural cell adhesion molecule	4e-07
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	4e-07
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	7e-06
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	4e-07
d1fnfa1	94	b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m	8e-07
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	1e-06
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	9e-04
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	1e-06
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	1e-06
d1bqua2	115	b.1.2.1 (A:100-214) Cytokine receptor gp130 cytoki	1e-06
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-06
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	0.001
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	2e-06
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	2e-04
d1fnla1	84	b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3	3e-06
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	4e-06
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	2e-05
d1gsma1	90	b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m	4e-06
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	5e-06
d2ibga1	95	b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit	7e-06
d2dtge3	125	b.1.2.1 (E:468-592) Insulin receptor {Human (Homo	8e-06
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	9e-06
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	1e-04
d2cuia1	101	b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens)	9e-06
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	1e-05
d1f2qa1	82	b.1.1.4 (A:4-85) IgE high affinity receptor alpha	1e-05
d1wj3a_	117	b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo s	1e-05
d1erna2	105	b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor	1e-05
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	2e-05
d1x5ia1	113	b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [	3e-05
d2nxyb2	84	b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (H	3e-05
d1owwa_	93	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	3e-05
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	3e-05
d1l6za1	107	b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C	4e-05
d1l6za1	107	b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C	0.004
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	5e-05
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	0.002
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	6e-05
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	6e-05
d2cuha1	102	b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens)	6e-05
d2cspa1	117	b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Ho	6e-05
d2dtge1	102	b.1.2.1 (E:808-909) Insulin receptor {Human (Homo	8e-05
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	1e-04
d1v5ja_	108	b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId	1e-04
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	2e-04
d1y6kr1	99	b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10	2e-04
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	3e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	4e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	0.004
d2fcba1	85	b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD3	8e-04
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	0.002
d1dr9a1	105	b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (	0.003

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (182), Expect = 8e-17
 Identities = 39/98 (39%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           PGPP+ P + + T+ SVTL W    P      P   Y +E FS  +   W   A+ + +T
Sbjct: 16  PGPPSKPQVTDVTKNSVTLSWQPGTPGT---LPASAYIIEAFSQSVSNSWQTVANHVKTT 72

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTL 507
             TV  L+P+T Y+F+VRA N  GL  PSP+S   RT 
Sbjct: 73  LYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQ 110

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 72.5 bits (177), Expect = 2e-16
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 72  PFPISEPSDA-TVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
           P    +P     V  G  V   C+V G P P ++W  +   +  GRA +  D  L I+ V
Sbjct: 3   PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATV-TDSGLVIKGV 61

Query: 131 GPQDEGLYICDVENLVGSISLRASLTVH 158
              D+G Y C   N  G       + V+
Sbjct: 62  KNGDKGYYGCRATNEHGDKYFETLVQVN 89

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 51.3 bits (122), Expect = 5e-09
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            + C   G P P+V W+              G      +  L I+GV+  D G++ C A 
Sbjct: 22  TIPCKVTGLPAPNVVWS-------HNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRAT 74

Query: 319 SVAGSTTVRAFLQV 332
           +  G       +QV
Sbjct: 75  NEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSV 391
            ++  D G Y C A++E G+  +   + V
Sbjct: 60  GVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (177), Expect = 3e-16
 Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P  P   V    +   + L W  P     G    + Y+V Y    +    V         
Sbjct: 11  PSAPRDVVASLVSTRFIKLTWRTPASDPHG--DNLTYSVFYTKEGIARERVENTSHPGEM 68

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
            +T+ +L P T Y+F V A+N HG G  S    + 
Sbjct: 69  QVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVE 103

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.7 bits (175), Expect = 7e-16
 Identities = 34/106 (32%), Positives = 45/106 (42%), Gaps = 8/106 (7%)

Query: 404 PDSGLF--PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVV 461
           PD G    P  P  P I   +  SV + W  P   GG   P+  + VEY        W++
Sbjct: 3   PDHGRLSPPEAPDRPTISTASETSVYVTW-IPRGNGG--FPIQSFRVEYKKLKKVGDWIL 59

Query: 462 AAHRI--TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVS-PIT 504
           A   I  +  S+ ++ L+   SY F VRA N  G   PS  S P  
Sbjct: 60  ATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYV 105

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 69.5 bits (169), Expect = 3e-15
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVG 131
                 P+D   L+G +V   C   G+P+P I WR+ DG   +    +  +  L I+NV 
Sbjct: 6   SIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW--LSSEPLLHIQNVD 63

Query: 132 PQDEGLYICDVENLVGSISLRASLTVH 158
            +DEG Y C+ EN+ G  + +  + +H
Sbjct: 64  FEDEGTYECEAENIKGRDTYQGRIIIH 90

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.0 bits (116), Expect = 4e-08
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            L CFA G+P+P + W             +     ++ E  L IQ V  ED G + C A 
Sbjct: 24  TLECFAFGNPVPQIKW--------RKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAE 75

Query: 319 SVAGSTTVRAFLQV 332
           ++ G  T +  + +
Sbjct: 76  NIKGRDTYQGRIII 89

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 6/30 (20%), Positives = 13/30 (43%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVE 392
           ++   D G Y C A +  G  ++   + + 
Sbjct: 61  NVDFEDEGTYECEAENIKGRDTYQGRIIIH 90

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 68.7 bits (167), Expect = 4e-15
 Identities = 23/87 (26%), Positives = 38/87 (43%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
           +P  +   +D     GS + + C   G P P + W RD   + +     +    L+   +
Sbjct: 1   QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKL 60

Query: 131 GPQDEGLYICDVENLVGSISLRASLTV 157
             +D G+Y C  EN  G++   A LTV
Sbjct: 61  VLEDSGMYQCVAENKHGTVYASAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.6 bits (107), Expect = 6e-07
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           R SC A G P P+V W +           A  +      G LR   +  ED+G + C A 
Sbjct: 20  RWSCVASGKPRPAVRWLR------DGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAE 73

Query: 319 SVAGSTTVRAFLQVR 333
           +  G+    A L V+
Sbjct: 74  NKHGTVYASAELTVQ 88

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 364 LRETDSGLYTCTASSESGETSWSASLSVE 392
           L   DSG+Y C A ++ G    SA L+V+
Sbjct: 60  LVLEDSGMYQCVAENKHGTVYASAELTVQ 88

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (167), Expect = 5e-15
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P            + SV+L W EPE   G    ++ Y ++Y+  D +     +  +  +T
Sbjct: 4   PSQVVVIRQERAGQTSVSLLWQEPEQPNG---IILEYEIKYYEKDKEM-QSYSTLKAVTT 59

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
             TVS LKP T Y+F VRA  S G G  S    + 
Sbjct: 60  RATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVE 94

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (164), Expect = 2e-14
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           PGP            S+ + W EP  + G    + GY + +   +     V       + 
Sbjct: 11  PGPVGHLSFSEILDTSLKVSWQEPGEKNG---ILTGYRISWEEYNRTNTRVTHYLPNVTL 67

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
              V+ L   T+Y   V A  S G G  S  +  +
Sbjct: 68  EYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISS 102

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 2e-14
 Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 5/96 (5%)

Query: 410 PGPPAAPVIL-NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
           PGP   P +        + L WG P   GG  +P+  Y+VE   S ++       ++ + 
Sbjct: 2   PGPCLPPRLQGRPKAKEIQLRWGPPLVDGG--SPISCYSVEM--SPIEKDEPREVYQGSE 57

Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
              TVS L P  +Y F +RA N  G G  S    IT
Sbjct: 58  VECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDIT 93

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 66.7 bits (162), Expect = 2e-14
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 77  EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP-----TGRAKILDDRSLQIENVG 131
           E     V + + V+F C  GG+P+PT+ W ++  +        G        SL +E+V 
Sbjct: 11  EKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVV 70

Query: 132 PQDEGLYICDVENLVGSISLRASLTV 157
           P D+G Y C VEN  GSI+    L V
Sbjct: 71  PSDKGNYTCVVENEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 3e-09
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           +  C A G+P+P++ W +   +         G+    Q  +L ++ V   D G + C   
Sbjct: 24  KFRCPAGGNPMPTMRWLK-NGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 82

Query: 319 SVAGSTTVRAFLQV 332
           +  GS      L V
Sbjct: 83  NEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 7e-04
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 165 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVR 224
           + E +   V +  T    C P  G P PT+ W KNG+    E        R     L + 
Sbjct: 9   KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME 67

Query: 225 P 225
            
Sbjct: 68  S 68

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 8e-04
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 360 IACDLRETDSGLYTCTASSESGETSWSASLSV 391
           I   +  +D G YTC   +E G  + +  L V
Sbjct: 65  IMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 4e-14
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 410 PGPPAAPVIL--NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
           P  P  PV       R ++ L W +P        P+I Y +E   ++     ++A+    
Sbjct: 11  PHAPEHPVATLSTVERRAINLTWTKPFDGNS---PLIRYILEMSENNAPWTVLLASVDPK 67

Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
           +TS+TV  L P  SY F + A N  G G  S  +     
Sbjct: 68  ATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSL 106

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.7 bits (159), Expect = 7e-14
 Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 3/96 (3%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
              P    + + T  + TL W  P+  G     + GY VEY     +         +   
Sbjct: 2   TSAPQHLTVEDVTDTTTTLKWRPPDRIG--AGGIDGYLVEYCLEGSEEWVPANKEPVERC 59

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVS-PIT 504
             TV DL      +F V   N  G   P+ +  P+T
Sbjct: 60  GFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVT 95

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (159), Expect = 7e-14
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 4/90 (4%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDD----RSLQI 127
           P  I  P D  V +G  VE   +V G    T  W +   ++       +++      L I
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTV 157
                +  G Y   VEN +GS   + +LTV
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQVNLTV 90

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (126), Expect = 2e-09
 Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 2/84 (2%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            L     G+   +  W +   Q+           +      L I   ++E  G +     
Sbjct: 19  ELFGKVTGTQPITCTWMKFRKQIQE--SEHMKVENSENGSKLTILAARQEHCGCYTLLVE 76

Query: 319 SVAGSTTVRAFLQVREFCVLPKGT 342
           +  GS   +  L V +    P GT
Sbjct: 77  NKLGSRQAQVNLTVVDKPDPPAGT 100

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 7e-06
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 365 RETDSGLYTCTASSESGETSWSASLSVEPRPGP 397
           R+   G YT    ++ G      +L+V  +P P
Sbjct: 64  RQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDP 96

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (158), Expect = 8e-14
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 3/95 (3%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P  PA+PV+       ++L W +P              +     +         +     
Sbjct: 1   PSMPASPVLTKAGITWLSLQWSKPSGTPS---DEGISYILEMEEETSGYGFKPKYDGEDL 57

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
           + TV +L+  T Y F V A NS G   PS V   T
Sbjct: 58  AYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFT 92

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 65.3 bits (158), Expect = 8e-14
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 4/87 (4%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR----AKILDDRSLQIENV 130
           +++P   TV  G    F C   G+P+PT+ W R    + T             + +I +V
Sbjct: 3   LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSV 62

Query: 131 GPQDEGLYICDVENLVGSISLRASLTV 157
              DEG Y   VEN  G      +LT+
Sbjct: 63  QASDEGNYSVVVENSEGKQEAEFTLTI 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 9e-09
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 2/76 (2%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           R SC  +G P+P+V W ++G  +     +           T  I  VQ  D G +     
Sbjct: 18  RFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKS--TFEISSVQASDEGNYSVVVE 75

Query: 319 SVAGSTTVRAFLQVRE 334
           +  G       L +++
Sbjct: 76  NSEGKQEAEFTLTIQK 91

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 4e-05
 Identities = 5/35 (14%), Positives = 15/35 (42%)

Query: 358 RRIACDLRETDSGLYTCTASSESGETSWSASLSVE 392
                 ++ +D G Y+    +  G+     +L+++
Sbjct: 56  TFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 90

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (157), Expect = 1e-13
 Identities = 22/95 (23%), Positives = 31/95 (32%), Gaps = 4/95 (4%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P  P  P I N T+ S+TL W  P   G      I   V  +      G     +  +  
Sbjct: 11  PDIPNPPRIANRTKNSLTLQWKAPSDNGS----KIQNFVLEWDEGKGNGEFCQCYMGSQK 66

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
              ++ L P     F + A N +G    S      
Sbjct: 67  QFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYY 101

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 64.5 bits (156), Expect = 2e-13
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 4/91 (4%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG----RAKILDDRSLQ 126
           +P  I +P    V  G    F CRV     P + W +DD ++       +    +D  L 
Sbjct: 1   QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 60

Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTV 157
           I  V   D+G Y    +N  G+      L V
Sbjct: 61  INRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 91

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.7 bits (115), Expect = 6e-08
 Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 2/76 (2%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
              C    S  P V W ++  +  +     Y   +   +  L I  V+ +D G +   A 
Sbjct: 20  NFYCRVIASSPPVVTWHKDDRE--LKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAK 77

Query: 319 SVAGSTTVRAFLQVRE 334
           +  G+     FL V  
Sbjct: 78  NSYGTKEEIVFLNVTR 93

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.5 bits (104), Expect = 2e-06
 Identities = 9/36 (25%), Positives = 13/36 (36%)

Query: 362 CDLRETDSGLYTCTASSESGETSWSASLSVEPRPGP 397
             ++  D G YT  A +  G       L+V     P
Sbjct: 62  NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEP 97

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (156), Expect = 2e-13
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           PGP         +  S+T+ W  P    G    +  Y + Y               ++S 
Sbjct: 11  PGPAPNLRAYAASPTSITVTWETPVSGNG---EIQNYKLYYMEKG---TDKEQDVDVSSH 64

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
           S T++ LK  T Y F V A N HG G+ +P   + 
Sbjct: 65  SYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVR 99

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 3e-13
 Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 2/100 (2%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFS--SDLQTGWVVAAHRIT 467
           PGPP    I N    SVTL +         ++  +           +        ++   
Sbjct: 11  PGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPD 70

Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTL 507
           + S+ V DL P T Y F +R  N  G   PS  S   +TL
Sbjct: 71  ARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTL 110

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (152), Expect = 5e-13
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           PG P   +I  T   +  L W  P+   G    ++GY ++Y     +             
Sbjct: 1   PGRPT-MMISTTAMNTALLQWHPPKELPG---ELLGYRLQY-CRADEARPNTIDFGKDDQ 55

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
             TV+ L   T+Y+F + A+N  GLG        T
Sbjct: 56  HFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRT 90

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (152), Expect = 7e-13
 Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 7/95 (7%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           PG P        +  S+ L W  P         +  Y + Y   +   G          T
Sbjct: 11  PGQPLNFKAEPESETSILLSWTPPRS-----DTIANYELVYKDGE--HGEEQRITIEPGT 63

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
           S  +  LKP++ Y F + A +  GLG  +      
Sbjct: 64  SYRLQGLKPNSLYYFRLAARSPQGLGASTAEISAR 98

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (151), Expect = 8e-13
 Identities = 35/97 (36%), Positives = 42/97 (43%), Gaps = 4/97 (4%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
             PP  PV LN TR +VTL W +PE  G     +  Y VE                I   
Sbjct: 3   IDPPGKPVPLNITRHTVTLKWAKPEYTG--GFKITSYIVEKRDLPNGRWLKANFSNILEN 60

Query: 470 SITVSDLKPDTSYMFIVRAENSHG-LGIPSPVS-PIT 504
             TVS L  D +Y F V A+N+ G +  PS  S  IT
Sbjct: 61  EFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAIT 97

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 62.6 bits (151), Expect = 9e-13
 Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 5/96 (5%)

Query: 68  ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRS--- 124
           ++  P         TV  GS   F  RV G P P   W ++  K+               
Sbjct: 1   SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 60

Query: 125 --LQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
             L I +V  +D    +    N+ G  S  A L V 
Sbjct: 61  CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQ 96

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 8e-07
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
                  G P P   W +     +      Y +        L I+ V  ED+   +  A+
Sbjct: 23  HFRVRVVGKPDPECEWYK-NGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAI 81

Query: 319 SVAGSTTVRAFLQVRE 334
           ++AG T+  AFL V+ 
Sbjct: 82  NIAGETSSHAFLLVQA 97

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 359 RIACDLRETDSGLYTCTASSESGETSWSASLSVEPR 394
            +  D+   DS      A + +GETS  A L V+ +
Sbjct: 63  LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 98

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (152), Expect = 1e-12
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           PGPP   +       SV L W  P    G +           ++       V     ++ 
Sbjct: 21  PGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANT--ATVEVLAPSAR 78

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
             T + LKP++ Y+F + A+   G G  +    +T
Sbjct: 79  QYTATGLKPESVYLFRITAQTRKGWGEAAEALVVT 113

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 62.2 bits (150), Expect = 1e-12
 Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 70  IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP-----TGRAKILDDRS 124
           +KP+      D  V+ GS   F C+V G P P ++W +DD  +              + S
Sbjct: 7   VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS 66

Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
           L I  V   D+  Y C   N +G  +  A L V 
Sbjct: 67  LTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 100

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           R  C  EG P P V W ++ + V     +           +L I  V  +D   + C A+
Sbjct: 27  RFDCKVEGYPDPEVMWFKDDNPVKESR-HFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV 85

Query: 319 SVAGSTTVRAFLQV 332
           +  G  T  A L V
Sbjct: 86  NSLGEATCTAELLV 99

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 40.6 bits (94), Expect = 4e-05
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query: 353 GNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVE 392
              +      ++   D   YTC A +  GE + +A L VE
Sbjct: 61  EEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 100

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 62.0 bits (149), Expect = 2e-12
 Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 15/107 (14%)

Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAH------- 464
           PP  P +   +  SV L W           P++ + V+Y     +  W            
Sbjct: 2   PPTPPNVTRLSDESVMLRW---MVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 58

Query: 465 -----RITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
                   S + +V+DLKP  +Y F + A  S+     S  S     
Sbjct: 59  KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL 105

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 3e-12
 Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY----FSSDLQTGWVVAAHR 465
            GPP    +   T  S+ + W  P+        + GY + Y      S+ Q   V     
Sbjct: 9   DGPPMDVTLQPVTSQSIQVTWKAPKKELQN-GVIRGYQIGYRENSPGSNGQYSIVEMKAT 67

Query: 466 ITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
             S   T+ +LK    Y  +V+A N  G G  S     T
Sbjct: 68  GDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINAT 106

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 4e-12
 Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 1/95 (1%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
              P    +      S+ + W +P         + GY + Y  +  ++         T  
Sbjct: 12  SAAPQNLSLEVRNSKSIMIHW-QPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQL 70

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
           S  +  L   T Y F V A   +G G  +      
Sbjct: 71  SQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAE 105

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 4e-12
 Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 18/105 (17%)

Query: 71  KP-FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT--------------- 114
           +P      P++A+ + G  VEFVC+V  D  P I W +   K  +               
Sbjct: 4   RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKA 63

Query: 115 --GRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
                   +   L I NV  +D G Y C   N +G     A LTV
Sbjct: 64  AGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 4e-07
 Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 11/85 (12%)

Query: 259 RLSCFAEGSPLPSVFWT-----------QEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQK 307
              C       P + W             +G   L     A  +    +   L I+ V  
Sbjct: 24  EFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF 83

Query: 308 EDAGFFVCSALSVAGSTTVRAFLQV 332
           EDAG + C A +  G +   A+L V
Sbjct: 84  EDAGEYTCLAGNSIGISFHSAWLTV 108

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.6 bits (143), Expect = 8e-12
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 75  ISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQ 133
           + E    +V  G+ V F+C      P  T++W R        R  +  +  L I NV P 
Sbjct: 6   VEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR-AMDFNGILTIRNVQPS 64

Query: 134 DEGLYICDVENLVGSISLRASLTV 157
           D G Y+C   N+       A+L V
Sbjct: 65  DAGTYVCTGSNMFAMDQGTATLHV 88

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 259 RLSCFAE-GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 317
              C A+  SP  ++ WT+  +  L           +   G L I+ VQ  DAG +VC+ 
Sbjct: 21  TFICTAKSKSPAYTLVWTRLHNGKLP-------SRAMDFNGILTIRNVQPSDAGTYVCTG 73

Query: 318 LSVAGSTTVRAFLQVR 333
            ++       A L V+
Sbjct: 74  SNMFAMDQGTATLHVQ 89

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 8/41 (19%), Positives = 10/41 (24%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID 204
              E +   V  G      C      P  TL W +      
Sbjct: 5   TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL 45

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 60.0 bits (144), Expect = 9e-12
 Identities = 12/97 (12%), Positives = 22/97 (22%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
              P   V   T   ++ + W               Y                       
Sbjct: 5   FKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQN 64

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
           +I ++D      Y+  V A N  G    +    +  +
Sbjct: 65  NIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYS 101

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.1 bits (142), Expect = 1e-11
 Identities = 26/88 (29%), Positives = 31/88 (35%), Gaps = 6/88 (6%)

Query: 77  EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG------RAKILDDRSLQIENV 130
              +AT   G  V  VC   G P PT+ W +D   +              D   L I NV
Sbjct: 11  SIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNV 70

Query: 131 GPQDEGLYICDVENLVGSISLRASLTVH 158
              DE  Y+C  EN  G       L V 
Sbjct: 71  DKNDEAEYVCIAENKAGEQDASIHLKVF 98

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.7 bits (128), Expect = 1e-09
 Identities = 22/74 (29%), Positives = 34/74 (45%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            L C A+G P P++ WT++G  +     +   H+       L I+ V K D   +VC A 
Sbjct: 24  TLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAE 83

Query: 319 SVAGSTTVRAFLQV 332
           + AG       L+V
Sbjct: 84  NKAGEQDASIHLKV 97

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.3 bits (88), Expect = 3e-04
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 365 RETDSGLYTCTASSESGETSWSASLSVEPR 394
            + D   Y C A +++GE   S  L V  +
Sbjct: 71  DKNDEAEYVCIAENKAGEQDASIHLKVFAK 100

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.4 bits (140), Expect = 2e-11
 Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 3/91 (3%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK---MPTGRAKILDDRSLQI 127
           K    + P+      G     VC V     PTI+W+            R  +L +  LQI
Sbjct: 1   KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI 60

Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTVH 158
             +   DEG Y C+   L         + V 
Sbjct: 61  RGIKKTDEGTYRCEGRILARGEINFKDIQVI 91

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            + C    S  P++ W  +G  V++     +  L        +I+G++K D G + C   
Sbjct: 20  VIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL---QIRGIKKTDEGTYRCEGR 76

Query: 319 SVAGSTTVRAFLQV 332
            +A        +QV
Sbjct: 77  ILARGEINFKDIQV 90

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 201
           F+  P       GE A++ C        PT+ WK  G+
Sbjct: 4   FKNAPTPQEFKEGEDAVIVC-DVVSSLPPTIIWKHKGR 40

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 3e-11
 Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 2/95 (2%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P  P    +      ++ L W  P P    +   + Y V  +S +    + +        
Sbjct: 2   PRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEP 61

Query: 470 --SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP 502
              I  S LK   SY   VRA         S  SP
Sbjct: 62  SLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSP 96

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 3e-11
 Identities = 17/96 (17%), Positives = 25/96 (26%), Gaps = 4/96 (4%)

Query: 410 PGPPAAPVIL-NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
           PG P  P +       S  + W  P+  GG     I   V   +           +   +
Sbjct: 11  PGIPVKPSVKGKIHSHSFKITWDPPKDNGGAT---INKYVVEMAEGSNGNKWEMIYSGAT 67

Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
                  L P   Y   V   +  G    S    + 
Sbjct: 68  REHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQ 103

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 4e-11
 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 7/101 (6%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGV------APVIGYTVEYFSSDLQTGWVVAA 463
                 PV  +    +V L W  P     G         + GY V   S+  + G   + 
Sbjct: 18  LSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTG-KDGKYKSV 76

Query: 464 HRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
           +    T+IT++DLKP   Y   V+AE +   G PS     T
Sbjct: 77  YVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFT 117

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 4e-11
 Identities = 21/98 (21%), Positives = 31/98 (31%), Gaps = 2/98 (2%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P PP    + +    SV L W   +     +           +      W        + 
Sbjct: 17  PNPPFDLELTDQLDKSVQLSWTPGDDNNSPI--TKFIIEYEDAMHKPGLWHHQTEVSGTQ 74

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTL 507
           +    +L P  +Y F V A NS G  +PS  S    T 
Sbjct: 75  TTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTK 112

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 4e-11
 Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 8/102 (7%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY-------FSSDLQTGWVVA 462
              P    +         + W +P P       + GY + Y         +       + 
Sbjct: 15  MVAPGNVRVNVVNSTLAEVHW-DPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKIL 73

Query: 463 AHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
             + + T   +  L+P + Y   VR  N  G G  SP     
Sbjct: 74  TFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFN 115

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.7 bits (138), Expect = 5e-11
 Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 4/99 (4%)

Query: 406 SGLFPGPPAAP-VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSD---LQTGWVV 461
           +G  P  P+    +++ T  S+   W          + ++                   V
Sbjct: 1   AGYPPASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCV 60

Query: 462 AAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPV 500
           A  R  + SI   +L         V+AEN  G      +
Sbjct: 61  AKKRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKL 99

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 6e-11
 Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 2/94 (2%)

Query: 410 PGPPAAPVILNTTRGSVTL-GWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
           P PPA   +    R    L    +           + + + Y +      +     +   
Sbjct: 2   PDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAER-SKTFTTWMVKDLQ 60

Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP 502
               + D      ++  +RA+   G G  S  SP
Sbjct: 61  HHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSP 94

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 7e-11
 Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 7/87 (8%)

Query: 78  PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRA------KILDDRSLQIENVG 131
           P   TV  G  V+  C V G   P I W +D   +           +      L +++V 
Sbjct: 3   PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 62

Query: 132 PQDEGLYICDVENLVGS-ISLRASLTV 157
             D G Y C VE+   + IS    LTV
Sbjct: 63  RSDAGRYWCQVEDGGETEISQPVWLTV 89

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 8e-07
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           +L+C  EG   P + W ++G+ V                G L ++ V++ DAG + C   
Sbjct: 15  KLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVE 74

Query: 319 SVAGS-TTVRAFLQV 332
               +  +   +L V
Sbjct: 75  DGGETEISQPVWLTV 89

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.003
 Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)

Query: 363 DLRETDSGLYTCTASSESGE-TSWSASLSVE 392
            +  +D+G Y C          S    L+VE
Sbjct: 60  SVERSDAGRYWCQVEDGGETEISQPVWLTVE 90

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 8e-11
 Identities = 24/104 (23%), Positives = 33/104 (31%), Gaps = 16/104 (15%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPL---PTILWRRDDGKMPT------------- 114
               +  P D  V  G  + F  RV G  L   P + W +      +             
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 115 GRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
            RA  +    L I +  P   G Y C+V           +LTVH
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH 107

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 4e-05
 Identities = 17/87 (19%), Positives = 23/87 (26%), Gaps = 10/87 (11%)

Query: 258 NRLSCFAEGSPL---PSVFWTQEGSQVLMFPGNAYGHLHVTQ-------EGTLRIQGVQK 307
              S    G+ L   P V W +     L      +  LH +           L I   Q 
Sbjct: 22  ITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQP 81

Query: 308 EDAGFFVCSALSVAGSTTVRAFLQVRE 334
              G + C   +          L V E
Sbjct: 82  AFTGGYRCEVSTKDKFDCSNFNLTVHE 108

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 7/30 (23%), Positives = 14/30 (46%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVE 392
           D +   +G Y C  S++      + +L+V 
Sbjct: 78  DAQPAFTGGYRCEVSTKDKFDCSNFNLTVH 107

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 56.9 bits (136), Expect = 8e-11
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 5/98 (5%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYF-SSDLQTGWVVAAHRITS 468
           P  P    I         + W +        +P++ YT+++  S    +          +
Sbjct: 6   PNAPKLTGITCQAD-KAEIHWEQQGDN---RSPILHYTIQFNTSFTPASWDAAYEKVPNT 61

Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
            S  V  + P  +Y F V A N  G   PS  S    T
Sbjct: 62  DSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTT 99

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 9e-11
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 6/100 (6%)

Query: 410 PGPPAAPVI--LNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
           P PP   V   + +    + + W  P       +  + + + Y    L            
Sbjct: 8   PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYR--PLILDQWQHVELSN 65

Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVS-PITRT 506
            T+ T++D      Y+  V A+++   G  S  S     T
Sbjct: 66  GTAHTITDAYAGKEYIIQVAAKDNEI-GTWSDWSVAAHAT 104

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 1e-10
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 10/100 (10%)

Query: 412 PPAAP-----VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYF--SSDLQTGWVVAAH 464
           P + P     V       ++ + W   +P       + GY + Y    +     WV+   
Sbjct: 11  PTSPPKDVTVVSKEGKPKTIIVNW---QPPSEANGKITGYIIYYSTDVNAEIHDWVIEPV 67

Query: 465 RITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
                +  + +L  DT Y F ++A NS G+G  S      
Sbjct: 68  VGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFR 107

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.6 bits (133), Expect = 2e-10
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 8/95 (8%)

Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQ--TGWVVAAHRITST 469
            P    + + T  S+ L W   E           Y V Y +   +     +V      +T
Sbjct: 3   APKNLRVGSRTATSLDLEWDNSEAEAQE------YKVVYSTLAGEQYHEVLVPKGIGPTT 56

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
             T++DL P T Y   + A  +    IP+ ++  T
Sbjct: 57  KTTLTDLVPGTEYGVGISAVMNSKQSIPATMNART 91

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.2 bits (134), Expect = 2e-10
 Identities = 18/101 (17%), Positives = 28/101 (27%), Gaps = 8/101 (7%)

Query: 410 PGPPAAPVI----LNTTRGSVTLGWGEPEPRGG-GVAPVIGYTVEYFSSDLQTGWVVAAH 464
           P PP    +    L   +  + + W  P           + Y +     +          
Sbjct: 3   PEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEE--AEEWEIHF 60

Query: 465 RITSTSITVSDLKPDTSYMFIVRAENSHGL-GIPSPVSPIT 504
               T   V DL P   Y+   R +  HG     S  S + 
Sbjct: 61  TGHQTQFKVFDLYPGQKYLVQTRCKPDHGYWSRWSQESSVE 101

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.6 bits (135), Expect = 2e-10
 Identities = 20/97 (20%), Positives = 31/97 (31%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
              P  PV+   T  S+ L W   +                   D +       +   +T
Sbjct: 16  LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYAT 75

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
              V  L+P T Y F ++  +  G    SPV  +  T
Sbjct: 76  RHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATT 112

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (132), Expect = 2e-10
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSI 471
            P+    L TT  S+ + W  P         + GY ++Y         VV   R   T  
Sbjct: 3   APSNLRFLATTPNSLLVSWQPPRA------RITGYIIKYEKPGSPPREVVPRPRPGVTEA 56

Query: 472 TVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
           T++ L+P T Y   V A  ++      P+    +T
Sbjct: 57  TITGLEPGTEYTIYVIALKNNQKS--EPLIGRKKT 89

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 2e-10
 Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 9/90 (10%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKI-----LDDRSLQIEN 129
             +  D T   G  VE  C V  D      ++  +  +P  +++           L IE 
Sbjct: 4   TKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEG 63

Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVHL 159
               D   Y         S    A L+V L
Sbjct: 64  ATKADAAEYSVMTTGGQSS----AKLSVDL 89

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 7e-04
 Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            L C        +V W + G +++  P + Y      ++  L I+G  K DA  +     
Sbjct: 19  ELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSV--- 74

Query: 319 SVAGSTTVRAFLQVRE 334
            +       A L V  
Sbjct: 75  -MTTGGQSSAKLSVDL 89

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 3e-10
 Identities = 27/222 (12%), Positives = 49/222 (22%), Gaps = 41/222 (18%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P  P  P+ ++ +   + L W  P    G    +  Y V +      +      + +   
Sbjct: 3   PSVPLDPISVSNSSSQIILKWKPPSDPNG---NITHYLVFWERQAEDSELFELDYCLKGL 59

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV 529
                   P  ++     +E+S                       Q L +          
Sbjct: 60  ------KLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKE---------- 103

Query: 530 VNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 589
           +       T    +     V   S  +  L +                      V     
Sbjct: 104 LEESSFRKTFEDYLHNVVFVPRPSRKRRSLGD----------------------VGNAGN 141

Query: 590 KYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGAR 631
                         S  ++ LR FT Y   L    +     R
Sbjct: 142 NEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEER 183

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 7e-09
 Identities = 17/128 (13%), Positives = 31/128 (24%), Gaps = 7/128 (5%)

Query: 382 ETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVA 441
           E S   + S                              T    +      P P      
Sbjct: 73  EDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKR-- 130

Query: 442 PVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVS 501
             +G      +++           +   S+ +S L+  T Y   ++A N         V+
Sbjct: 131 RSLGDVGNAGNNE---EHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVA 187

Query: 502 PIT--RTL 507
                RT+
Sbjct: 188 AYVSARTM 195

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 3e-10
 Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 5/97 (5%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPE---PRGGGVAPVIGYTVEYFSSDLQTGWVVAAH-R 465
           P  P    I +T +    L W                + + V Y                
Sbjct: 6   PPEPRDLQI-STDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSN 64

Query: 466 ITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP 502
            +  ++    L P ++Y+  VR   + G  +    S 
Sbjct: 65  TSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSK 101

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (131), Expect = 3e-10
 Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 6/93 (6%)

Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSI 471
            P      +    S+ + W  P+ +         Y V Y S +     +  A      + 
Sbjct: 4   RPKGLAFTDVDVDSIKIAWESPQGQVSR------YRVTYSSPEDGIHELFPAPDGEEDTA 57

Query: 472 TVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
            +  L+P + Y   V A +      P   +  T
Sbjct: 58  ELQGLRPGSEYTVSVVALHDDMESQPLIGTQST 90

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 4e-10
 Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 1/94 (1%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
              P +  +++       + W   +        +                 +   +    
Sbjct: 3   LMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQE 62

Query: 470 SITVSDLKPDTSYMFIVRAENSHG-LGIPSPVSP 502
            I +  L PDT Y F VR +   G     SP S 
Sbjct: 63  WICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQ 96

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 6e-10
 Identities = 16/95 (16%), Positives = 29/95 (30%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
             PP        +  ++ + W +             Y    + +++           T+ 
Sbjct: 2   MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 61

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
           S  V+ LKP+T Y F V           S  +  T
Sbjct: 62  SYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGT 96

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 7e-10
 Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 6/95 (6%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P     P +   +     + W  P   G     V  Y +E+   +         +     
Sbjct: 1   PDQCKPPQVTCRSATCAQVNWEVPLSNGT---DVTEYRLEWGGVEGSMQIC---YCGPGL 54

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
           S  +  L P T+Y   V+A +  G G  S V    
Sbjct: 55  SYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACV 89

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.1 bits (129), Expect = 7e-10
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 71  KPFPISEPSDATVLSGSV---VEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRS 124
            P    +P+      GS    V   CR   +P  T  W+ +  ++  G   R +++    
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63

Query: 125 LQIENVGPQDEGLYICDVENLVGSI-SLRASL 155
           +    V  +D G Y C   N  G++ S  ASL
Sbjct: 64  VISNPVKAKDAGSYQCVATNARGTVVSREASL 95

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.3 bits (93), Expect = 5e-05
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            L+C A  +P  +  W   G+++ M P +      +     +    V+ +DAG + C A 
Sbjct: 26  TLTCRARANPPATYRWKMNGTELKMGPDS---RYRLVAGDLVISNPVKAKDAGSYQCVAT 82

Query: 319 SVAGS-TTVRAFLQ 331
           +  G+  +  A L+
Sbjct: 83  NARGTVVSREASLR 96

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 1e-09
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 4/95 (4%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P        ++ T  S+TL W +PE        +I      +       +  +  R  + 
Sbjct: 1   PSTVPIMHQVSATMRSITLSWPQPEQPN----GIILDYEIRYYEKEHNEFNSSMARSQTN 56

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
           +  +  L+P   Y+  VRA    G G  S      
Sbjct: 57  TARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQ 91

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

 Score = 53.3 bits (127), Expect = 1e-09
 Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 13/96 (13%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P  P        T  S+TL W       G    V GY V              A  +T T
Sbjct: 4   PTAPTNLASTAQTTSSITLSWTASTDNVG----VTGYDVYN--------GTALATTVTGT 51

Query: 470 SITVSDLKPDTSYMFIVRAENSHG-LGIPSPVSPIT 504
           + T+S L  DTSY F V+A+++ G +   S    + 
Sbjct: 52  TATISGLAADTSYTFTVKAKDAAGNVSAASNAVSVK 87

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 1e-09
 Identities = 13/99 (13%), Positives = 27/99 (27%), Gaps = 6/99 (6%)

Query: 407 GLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI 466
           GL P  P     +      +   W               +T++   +  +     A    
Sbjct: 1   GLPPEKPKNLSCIVNEGKKMRCEWDGGRETH----LETNFTLKSEWATHKFADCKAKRDT 56

Query: 467 TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVS--PI 503
            ++           +    V AEN+ G      ++  P+
Sbjct: 57  PTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPV 95

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 1e-09
 Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 6/94 (6%)

Query: 413 PAAPVILN--TTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTS 470
             AP  L       S +L W   + R         + ++Y                 + S
Sbjct: 5   QMAPPSLQVTKDGDSYSLRWETMKMRYEH--IDHTFEIQYRKDTATWKDSKTETLQNAHS 62

Query: 471 ITVSDLKPDTSYMFIVRAENSHGL--GIPSPVSP 502
           + +  L+P T Y   VR   S     GI S  S 
Sbjct: 63  MALPALEPSTRYWARVRVRTSRTGYNGIWSEWSE 96

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 1e-09
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSI 471
            P      + T  S T+ W  P       A + GY + +                +  SI
Sbjct: 3   SPTGIDFSDITANSFTVHWIAPR------ATITGYRIRHHPEHFSGRPREDRVPHSRNSI 56

Query: 472 TVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
           T+++L P T Y+  + A N         +     T
Sbjct: 57  TLTNLTPGTEYVVSIVALNGREES--PLLIGQQST 89

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.4 bits (127), Expect = 1e-09
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 8/98 (8%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
                +  ++      + L W    PR  G    + Y +   + D +   +     +   
Sbjct: 3   SLSGLSLKLVKKEPRQLELTWAGSRPRNPG--GNLSYELHVLNQDEEWHQM-----VLEP 55

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTL 507
            + ++ L+PDT+Y+  VR     G G  SP     RT 
Sbjct: 56  RVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEF-RTS 92

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.4 bits (127), Expect = 1e-09
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 4/92 (4%)

Query: 70  IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR----SL 125
           +KP  ++      + +G          G P PT  W   D         ++D +    S+
Sbjct: 1   LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60

Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTV 157
              +    D G Y   V+N +G       + V
Sbjct: 61  FFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 1e-09
 Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 33/120 (27%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP------------------ 113
             P   P    V++G+ +     + GDP PT++W++   +                    
Sbjct: 10  DCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSD 69

Query: 114 ------------TGRAKIL---DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
                        GR ++    D     +E    +DEG+Y   V+N VG   +  ++ V 
Sbjct: 70  EWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 129

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 5e-05
 Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 27/103 (26%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVL------------------------MFPGNAYGHLHV 294
           RL     G P P+V W +  +Q                                 G + V
Sbjct: 28  RLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRV 87

Query: 295 TQEG---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
                     ++G +KED G +  +  +  G   V   ++V +
Sbjct: 88  ETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 130

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 8/29 (27%), Positives = 14/29 (48%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSV 391
              + D G+YT T  +  GE   + ++ V
Sbjct: 100 GAEKEDEGVYTVTVKNPVGEDQVNLTVKV 128

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 2e-09
 Identities = 17/91 (18%), Positives = 24/91 (26%), Gaps = 8/91 (8%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAK-------ILDDRSLQI 127
                +  V +G    F C   G  +           +     K            S  +
Sbjct: 5   FLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNV 64

Query: 128 ENVGPQDEGLYICDVENLVGSI-SLRASLTV 157
            N   +D G Y C +    G   S  A L V
Sbjct: 65  VNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 9e-06
 Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 2/74 (2%)

Query: 262 CFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG-TLRIQGVQKEDAGFFVCSALSV 320
           C A G  +       +G  V   P          +   +  +    K DAG + C   + 
Sbjct: 23  CSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTE 82

Query: 321 AGSTTVR-AFLQVR 333
            G      A L V+
Sbjct: 83  GGVGISNYAELVVK 96

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 2e-09
 Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 7/95 (7%)

Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSI 471
           PP      N    ++ + W  P         +  + V Y     +      +   +  ++
Sbjct: 3   PPTDLRFTNIGPDTMRVTWAPPPS-----IDLTNFLVRYSPVKNEEDVAELSISPSDNAV 57

Query: 472 TVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
            +++L P T Y+  V +         +P+    +T
Sbjct: 58  VLTNLLPGTEYVVSVSSVYEQHES--TPLRGRQKT 90

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.5 bits (127), Expect = 2e-09
 Identities = 16/110 (14%), Positives = 30/110 (27%), Gaps = 19/110 (17%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI--- 466
           PG P+   I       + L W  P    G    ++ Y+        Q     +       
Sbjct: 8   PGAPSTVRISKNVD-GIHLSWEPPTSPSG---NILEYSAYLAIRTAQMQDNPSQLVFMRI 63

Query: 467 ------------TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
                          +    D     + +F + A+N  G G  + +  + 
Sbjct: 64  YCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQIRWLQ 113

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 3e-09
 Identities = 12/92 (13%), Positives = 24/92 (26%), Gaps = 7/92 (7%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P  P    +   +   + L W             + + V+Y +                 
Sbjct: 3   PWAPENLTLHKLSESQLELNWNNRFLN-----HCLEHLVQYRTDW--DHSWTEQSVDYRH 55

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVS 501
             ++  +     Y F VR+  +   G     S
Sbjct: 56  KFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWS 87

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 3e-09
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 9/81 (11%)

Query: 78  PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGL 137
           P + T    S    +C+  G+PLP +   +D                 +   V    EG 
Sbjct: 11  PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL---------PIGESVTVTRDLEGT 61

Query: 138 YICDVENLVGSISLRASLTVH 158
           Y+C   +  G ++   ++ V 
Sbjct: 62  YLCRARSTQGEVTREVTVNVL 82

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 7e-09
 Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 4/95 (4%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P  P     +     S+ +   + +    G +P+  Y V Y +   +    +      S 
Sbjct: 1   PSAPKLEGQMGEDGNSIKVNLIKQDD---GGSPIRHYLVRYRALSSEWKPEIR-LPSGSD 56

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
            + +  L  +  Y   V AEN  G    +     T
Sbjct: 57  HVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRT 91

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 8e-09
 Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 16/100 (16%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPL---PTILWRRDDGKMPTGRAKI------------ 119
           I +P   TV  G  + F+ +V  + L   PTI W +        +A              
Sbjct: 4   IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHS 63

Query: 120 -LDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
            +    +QI        G Y C+V       S    L VH
Sbjct: 64  RVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH 103

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 5e-04
 Identities = 11/86 (12%), Positives = 23/86 (26%), Gaps = 10/86 (11%)

Query: 259 RLSCFAEGSPL---PSVFWTQEGSQVL-------MFPGNAYGHLHVTQEGTLRIQGVQKE 308
                 +   L   P++ W +     L       +     +          ++I   +  
Sbjct: 19  TFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDN 78

Query: 309 DAGFFVCSALSVAGSTTVRAFLQVRE 334
            AG + C         +    L+V E
Sbjct: 79  FAGNYRCEVTYKDKFDSCSFDLEVHE 104

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 8/35 (22%), Positives = 13/35 (37%)

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGP 397
             ++  +G Y C  + +    S S  L V    G 
Sbjct: 74  KAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGT 108

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (122), Expect = 9e-09
 Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 7/85 (8%)

Query: 82  TVLSGSVVEFVC------RVGGDPLPTILWRRDDGKMPT-GRAKILDDRSLQIENVGPQD 134
            +        VC      +   + LP + W +D   +             L + NV  + 
Sbjct: 10  KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKH 69

Query: 135 EGLYICDVENLVGSISLRASLTVHL 159
            G Y C             +  +  
Sbjct: 70  RGNYTCHASYTYLGKQYPITRVIEF 94

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 3e-05
 Identities = 10/70 (14%), Positives = 20/70 (28%), Gaps = 5/70 (7%)

Query: 263 FAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 322
             E + LP + W ++       P           +  L +  V ++  G + C A     
Sbjct: 28  KNENNELPKLQWYKDCK-----PLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYL 82

Query: 323 STTVRAFLQV 332
                    +
Sbjct: 83  GKQYPITRVI 92

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.6 bits (120), Expect = 1e-08
 Identities = 22/96 (22%), Positives = 30/96 (31%), Gaps = 9/96 (9%)

Query: 411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTS 470
           G P      + T  S T+ W  P  R         Y V Y      T  VV     + T 
Sbjct: 2   GSPKGISFSDITENSATVSWTPPRSRVDS------YRVSYVPITGGTPNVVTVDG-SKTR 54

Query: 471 ITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
             +  L P   Y   + +          P+S I +T
Sbjct: 55  TKLVKLVPGVDYNVNIISVKGFEES--EPISGILKT 88

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 50.7 bits (120), Expect = 1e-08
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG------RAKILDDRS 124
           +P P     D    +G V    C  G +P+    + ++   +         R      + 
Sbjct: 3   EPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 62

Query: 125 LQIENVGPQDEGLYICDVENLVGSI-SLRASLTV 157
           L  +   P+DEG+Y C+V+N VG        LTV
Sbjct: 63  LLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 96

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 40.7 bits (94), Expect = 4e-05
 Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 1/75 (1%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            + C    +P+    + + G  V   P +     + T    L  +    ED G + C   
Sbjct: 22  MIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVD 81

Query: 319 SVAGS-TTVRAFLQV 332
           +  G        L V
Sbjct: 82  NGVGKPQKHSLKLTV 96

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.4 bits (119), Expect = 2e-08
 Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 3/97 (3%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQ--TGWVVAAHRIT 467
              P           ++ L W           P+ G+ + Y  +D    + +        
Sbjct: 2   VAGPYITFTDAVNETTIMLKWMYIPASNN-NTPIHGFYIYYRPTDSDNDSDYKKDMVEGD 60

Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
               ++S L+P+TSY   ++  N  G    S V    
Sbjct: 61  RYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICE 97

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 2e-08
 Identities = 25/99 (25%), Positives = 34/99 (34%), Gaps = 10/99 (10%)

Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSI 471
            P        T  +  L W EP           GY + + +   QT  ++       TS 
Sbjct: 4   APRDLEAKEVTPRTALLTWTEPP------VRPAGYLLSFHTPGGQTQEILLPG--GITSH 55

Query: 472 TVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLN 510
            +  L P TSY   ++A     L    PVS    T GL 
Sbjct: 56  QLLGLFPSTSYNARLQAMWGQSLL--PPVSTSFTTGGLR 92

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 2e-08
 Identities = 17/99 (17%), Positives = 27/99 (27%), Gaps = 2/99 (2%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTG--WVVAAHRIT 467
           P  P        +     L W EP    G +             +   G    V      
Sbjct: 3   PSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPK 62

Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
           +  + + +L+    Y + V+A N  G G          T
Sbjct: 63  NRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLAT 101

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 2e-08
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 7/93 (7%)

Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSI 471
           PP    + + T  ++T+ W            + G+ V+          +    +    S 
Sbjct: 4   PPRRARVTDATETTITISWRTKT------ETITGFQVDA-VPANGQTPIQRTIKPDVRSY 56

Query: 472 TVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
           T++ L+P T Y   +   N +    P  +   T
Sbjct: 57  TITGLQPGTDYKIYLYTLNDNARSSPVVIDAST 89

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 2e-08
 Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 6/93 (6%)

Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSI 471
            P        T  S++  W  P  +  G    +  T +  +  ++   +       S+S+
Sbjct: 2   APTDLKFTQVTPTSLSAQWTPPNVQLTG--YRVRVTPKEKTGPMKEINL----APDSSSV 55

Query: 472 TVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
            VS L   T Y   V A        P+     T
Sbjct: 56  VVSGLMVATKYEVSVYALKDTLTSRPAQGVVTT 88

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 2e-08
 Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 6/95 (6%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
              P+   + + T  +  + W +P     G        + Y   D+              
Sbjct: 2   LDAPSQIEVKDVTDTTALITWFKPLAEIDG------IELTYGIKDVPGDRTTIDLTEDEN 55

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
             ++ +LKPDT Y   + +        P+  +  T
Sbjct: 56  QYSIGNLKPDTEYEVSLISRRGDMSSNPAKETFTT 90

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 3e-08
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 418 ILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLK 477
           ++  T  S+ + W  P         V  Y + Y  +   +         + ++ T+S LK
Sbjct: 5   VVAATPTSLLISWDAPA------VTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLK 58

Query: 478 PDTSYMFIVRAENSHGLGIPS--PVSPITRT 506
           P   Y   V A    G    S  P+S   RT
Sbjct: 59  PGVDYTITVYAVTGRGDSPASSKPISINYRT 89

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.5 bits (117), Expect = 3e-08
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 8/93 (8%)

Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSI 471
            P    + + T  +++L W  P       A    Y + Y S   +   +     + STS 
Sbjct: 2   NPKDLEVSDPTETTLSLRWRRPV------AKFDRYRLTYVSPSGKKNEME--IPVDSTSF 53

Query: 472 TVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
            +  L   T Y   + AE       P+ +   T
Sbjct: 54  ILRGLDAGTEYTISLVAEKGRHKSKPTTIKGST 86

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 3e-08
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 12/100 (12%)

Query: 70  IKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPT-----------GRA 117
           + P   +    ++   G+     C    G P     W +D   MPT              
Sbjct: 1   VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV 60

Query: 118 KILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
                  L  + +   D G Y C+  N  G+     ++ +
Sbjct: 61  LNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 100

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 259 RLSCFA-EGSPLPSVFWTQEGSQVLMFPG-----NAYGHLHVTQEGTLRIQGVQKEDAGF 312
            L+C   +GSP     W ++G  +   P      +   ++     G L    +   D G 
Sbjct: 21  VLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGE 80

Query: 313 FVCSALSVAGSTTVRAFLQVR 333
           + C A +  G+      +++ 
Sbjct: 81  YSCEARNGYGTPMTSNAVRME 101

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.7 bits (115), Expect = 4e-08
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 8/90 (8%)

Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSI 471
            P   ++  ++  S++L W +                    +               TS 
Sbjct: 3   SPRDLMVTASSETSISLIWTKASGPIDHY--------RITFTPSSGISSEVTVPRDRTSY 54

Query: 472 TVSDLKPDTSYMFIVRAENSHGLGIPSPVS 501
           T++DL+P   Y+  + AE      + S V 
Sbjct: 55  TLTDLEPGAEYIISITAERGRQQSLESTVD 84

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (117), Expect = 4e-08
 Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 13/101 (12%)

Query: 70  IKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAK---------- 118
           + P   +    ++V  G+     C    G P     W +D   M T  AK          
Sbjct: 1   VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 60

Query: 119 --ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
                   L  + V   D G Y C  +N  G+     +  +
Sbjct: 61  TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 101

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.1 bits (87), Expect = 5e-04
 Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 9/85 (10%)

Query: 259 RLSCFA-EGSPLPSVFWTQEGSQVL------MFPGNAYGHLHVTQEGTLRIQGVQKEDAG 311
            L+C   +GSP     W ++G  +L                   + G L    V   D+G
Sbjct: 21  VLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSG 80

Query: 312 FFVCSALSVAGSTTVRAF--LQVRE 334
            + C A +  G+        +   E
Sbjct: 81  EYYCQAQNGYGTAMRSEAAHMDAVE 105

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 48.9 bits (115), Expect = 5e-08
 Identities = 20/87 (22%), Positives = 28/87 (32%), Gaps = 4/87 (4%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK----MPTGRAKILDDRSLQ 126
            P    +P++      +     C + G+        + DGK         A   D+ SL 
Sbjct: 2   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV 61

Query: 127 IENVGPQDEGLYICDVENLVGSISLRA 153
                  DEG Y C  E   G  S R 
Sbjct: 62  FLRPQASDEGHYQCFAETPAGVASSRV 88

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 37.3 bits (85), Expect = 5e-04
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 3/75 (4%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
            L C  EG+     +  ++  +   +    +       EG+L     Q  D G + C A 
Sbjct: 21  VLECIIEGNDQGVKYSWKKDGK--SYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAE 78

Query: 319 SVAGSTTVR-AFLQV 332
           + AG  + R    + 
Sbjct: 79  TPAGVASSRVISFRK 93

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 5e-08
 Identities = 22/94 (23%), Positives = 30/94 (31%), Gaps = 11/94 (11%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDP-LPTILWRRDDGKMPTGRAKILDDRS--------- 124
           I   S+ ++L+G   E  C V      P + W + +G                       
Sbjct: 7   IKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFI 66

Query: 125 LQIENVGPQDEGLYICDVENLVGSI-SLRASLTV 157
           L  E V P D G Y C        I S   +L V
Sbjct: 67  LHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYV 100

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 7e-04
 Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 5/81 (6%)

Query: 259 RLSCFAEGSP-LPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTL---RIQGVQKEDAGFFV 314
            L C  +     P V W +      +   +        +  +      + V   D G + 
Sbjct: 22  ELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYR 81

Query: 315 CSALSVAGSTTVRAF-LQVRE 334
           CSA   +      +  L V +
Sbjct: 82  CSANFQSNLIESHSTTLYVTD 102

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 7e-08
 Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 14/95 (14%)

Query: 78  PSDATVLSGSVVEFVC---RVGGDPLPTILWRRDDGKMPTGRA-----------KILDDR 123
           P+   + +   +   C    V G P P++ W  +   +                + +   
Sbjct: 4   PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63

Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
            L++      + G Y     N  G  S        
Sbjct: 64  CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 98

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 3e-06
 Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 5/80 (6%)

Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLH-----VTQEGTLRIQGVQKEDAGFFV 314
           +    +G P PS+ W   GS +          L        + G LR+      + G + 
Sbjct: 20  IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79

Query: 315 CSALSVAGSTTVRAFLQVRE 334
             A +  G  +        +
Sbjct: 80  LLAANPFGQASASIMAAFMD 99

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 14/93 (15%), Positives = 24/93 (25%), Gaps = 2/93 (2%)

Query: 305 VQKEDAGFFVCSALSVAGS--TTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIAC 362
           +         C   SV G    ++R                   +P              
Sbjct: 9   LHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLN 68

Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
                ++G YT  A++  G+ S S   +    P
Sbjct: 69  QPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 101

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 8/101 (7%)

Query: 410 PGPPAA------PVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAA 463
           P PP A       V L      + + W  P          +    E    ++        
Sbjct: 1   PDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQK-GWMVLEYELQYKEVNETKWKMM 59

Query: 464 HRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
             I +TS+ V  LK D  Y   VR++  +  G     S + 
Sbjct: 60  DPILTTSVPVYSLKVDKEYEVRVRSKQRNS-GNYGEFSEVL 99

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 1e-07
 Identities = 15/94 (15%), Positives = 24/94 (25%), Gaps = 7/94 (7%)

Query: 411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTS 470
           G P  P         +   W    P  G            +     +            S
Sbjct: 3   GAPQNPNAKAAGSRKIHFNW---LPPSG----KPMGYRVKYWIQGDSESEAHLLDSKVPS 55

Query: 471 ITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
           + +++L P   Y   V A  + G G  S +    
Sbjct: 56  VELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCR 89

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 1e-07
 Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 5/93 (5%)

Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSI 471
                  ++ T  S+ L W            +IGY +   ++             +    
Sbjct: 8   QLTDLSFVDITDSSIGLRWTPLNSS-----TIIGYRITVVAAGEGIPIFEDFVDSSVGYY 62

Query: 472 TVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
           TV+ L+P   Y   V    + G   P+ ++  T
Sbjct: 63  TVTGLEPGIDYDISVITLINGGESAPTTLTQQT 95

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 2e-07
 Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 5/92 (5%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKIL----DDRSL 125
           K     E       +  +    C +   +   TI W +DD K P    +          L
Sbjct: 2   KCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKL 61

Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTV 157
                  +D G Y C V N    + ++ S   
Sbjct: 62  WFVPAKVEDSGHYYCVVRNSSYCLRIKISAKF 93

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 165 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQFIDLESSKSLDLSRRTLGWLR 222
           R E      ++ E  +  C     + + T+ W K+     +  E +  +   +  L ++ 
Sbjct: 6   REEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVP 65

Query: 223 VRP 225
            + 
Sbjct: 66  AKV 68

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 5e-04
 Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 3/76 (3%)

Query: 260 LSC-FAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
             C         ++ W ++ S+                +  L     + ED+G + C   
Sbjct: 22  RPCPLNPNEHKGTITWYKDDSK--TPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVR 79

Query: 319 SVAGSTTVRAFLQVRE 334
           + +    ++   +  E
Sbjct: 80  NSSYCLRIKISAKFVE 95

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 9/92 (9%), Positives = 19/92 (20%), Gaps = 2/92 (2%)

Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSI 471
           P    V + +   +  + W                   Y   + +             +I
Sbjct: 2   PTPTNVTIESYNMNPIVYWEYQIMPQV--PVFTVEVKNYGVKNSEWIDACINISHHYCNI 59

Query: 472 TVSDLKPDTSYMFIVRAENSHGLGIPSPVSPI 503
           +     P  S    V+A         +     
Sbjct: 60  SDHVGDPSNSLWVRVKARVGQKESAYAKSEEF 91

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 17/100 (17%), Positives = 25/100 (25%), Gaps = 6/100 (6%)

Query: 410 PGPPAAP----VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHR 465
           P PP             +  + + W  P               E      +         
Sbjct: 3   PDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFT-LLYEIRLKPEKAAEWEIHFA 61

Query: 466 ITSTSITVSDLKPDTSYMFIVRAENSHGL-GIPSPVSPIT 504
              T   +  L P   Y+  VR +  HG     SP + I 
Sbjct: 62  GQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFIQ 101

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.5 bits (109), Expect = 3e-07
 Identities = 12/95 (12%), Positives = 27/95 (28%), Gaps = 6/95 (6%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
              P   ++ + +     + W  P  +           ++Y     + G      +   +
Sbjct: 4   IDGPTQILVRDVSDTVAFVEWTPPRAKVDF------ILLKYGLVGGEGGKTTFRLQPPLS 57

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
             +V  L+P + Y   + A         S     T
Sbjct: 58  QYSVQALRPGSRYEVSISAVRGTNESDASSTQFTT 92

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 3e-07
 Identities = 19/109 (17%), Positives = 32/109 (29%), Gaps = 2/109 (1%)

Query: 396 GPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDL 455
           G        + G        PV+L  T  +V + W             + Y         
Sbjct: 4   GSSGRQVQKELGDVLVRLHNPVVLTPT--TVQVTWTVDRQPQFIQGYRVMYRQTSGLQAT 61

Query: 456 QTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
            +   + A   T  S  + +LK   +Y   VR   +   G+ S    + 
Sbjct: 62  SSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVR 110

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.6 bits (109), Expect = 4e-07
 Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 5/86 (5%)

Query: 70  IKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGR----AKILDDRS 124
           ++ F   E     +  G  V F C      P  +  W  ++                  +
Sbjct: 3   LQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN 62

Query: 125 LQIENVGPQDEGLYICDVENLVGSIS 150
           L I      D G Y C   + +  I+
Sbjct: 63  LYIAKTEASDLGNYSCFATSHIDFIT 88

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 4e-07
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 2/96 (2%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEP-EPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
           P  P+   +      +  + + EP    G  +                + W  A      
Sbjct: 3   PSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME 61

Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
             +T+  LKP+T+Y   + A N  GLG  S  S   
Sbjct: 62  GIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK 97

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 4e-07
 Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 12/92 (13%)

Query: 78  PSDATVLSGSVVEFVC---RVGGDPLPTILWRRDDGKMPT---------GRAKILDDRSL 125
           P+   + S +     C    V G+P P + W  +   +                     L
Sbjct: 5   PTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCL 64

Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTV 157
           Q++N    + G Y    +N  G    + S   
Sbjct: 65  QLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 7e-06
 Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 3/78 (3%)

Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFP---GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 316
           +    +G+P P++ W   G+ +          +   H    G L++      + G +   
Sbjct: 21  IPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLI 80

Query: 317 ALSVAGSTTVRAFLQVRE 334
           A +  G    +       
Sbjct: 81  AKNEYGKDEKQISAHFMG 98

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 4e-07
 Identities = 16/89 (17%), Positives = 24/89 (26%), Gaps = 3/89 (3%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTG-RAKILDDRSLQIE 128
            P         T L G  V   C     +   T+ W        +         R L + 
Sbjct: 6   CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLR 65

Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTV 157
           +V   D G Y C         ++   + V
Sbjct: 66  SVQLHDSGNYSCYRAGRPAG-TVHLLVDV 93

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 8e-07
 Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 10/98 (10%)

Query: 412 PPAAP----VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAH-RI 466
           P + P    +  N   G +T+ W            + GY +    ++ Q G  +      
Sbjct: 1   PLSPPTNLHLEANPDTGVLTVSWERST-----TPDITGYRITTTPTNGQQGNSLEEVVHA 55

Query: 467 TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
             +S T  +L P   Y   V         +P   + I 
Sbjct: 56  DQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIP 93

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 19/98 (19%), Positives = 28/98 (28%), Gaps = 12/98 (12%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--------GKMPTGRAKILDD- 122
           P   +  S   +  G     VC+    P  T                     R  +    
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 123 --RSLQIENVGPQD-EGLYICDVENLVGSISLRASLTV 157
               L IEN+  +   G Y C+  +  GS     +L V
Sbjct: 63  GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 9e-04
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 6/81 (7%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQV-----LMFPGNAYGHLHVTQEGTLRIQGVQKED-AGF 312
            L C +E  P  + +   + +       +    + +          L I+ +  E   G 
Sbjct: 21  MLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ 80

Query: 313 FVCSALSVAGSTTVRAFLQVR 333
           + C+  S  GS      L+VR
Sbjct: 81  YRCNGTSSKGSDQAIITLRVR 101

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (106), Expect = 1e-06
 Identities = 18/102 (17%), Positives = 29/102 (28%), Gaps = 12/102 (11%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAK------------ 118
           K    +  SD  V     ++  C   G   P + W+   G                    
Sbjct: 1   KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60

Query: 119 ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLL 160
                 +   +V  +D G Y C V    G      S+ + +L
Sbjct: 61  TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL 102

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 1e-06
 Identities = 15/95 (15%), Positives = 26/95 (27%), Gaps = 13/95 (13%)

Query: 69  LIKPFPISEP-SDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR----AKILDDR 123
           LI+   + +P     V  G    F   +  +P     W+     +         +     
Sbjct: 1   LIE---VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKH 56

Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
            L + N      G       N   +    A+L V 
Sbjct: 57  ILILHNCQLGMTGEVSFQAANAKSA----ANLKVK 87

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 1e-06
 Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 3/99 (3%)

Query: 410 PGPPAAPVILNT--TRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
           P PP    ++N+      + L W  P  +   +            +   +         T
Sbjct: 5   PNPPHNLSVINSEELSSILKLTWTNPSIKSVII-LKYNIQYRTKDASTWSQIPPEDTAST 63

Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
            +S TV DLKP T Y+F +R     G G  S  S     
Sbjct: 64  RSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASG 102

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 2e-06
 Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 10/81 (12%)

Query: 82  TVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL-----DDRSLQIENVGPQDEG 136
            V  G  +     +       + W ++  ++    +K +       R+L I      D+ 
Sbjct: 17  QVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDA 75

Query: 137 LYICDVENLVGSISLRASLTV 157
            Y C V     S      L V
Sbjct: 76  AYQCVVGGEKCS----TELFV 92

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 6/76 (7%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
           RL+          V W + G ++    G+ Y    +  + TL I      D   + C   
Sbjct: 25  RLTVEL-ADHDAEVKWLKNGQEI-QMSGSKYIFESIGAKRTLTISQCSLADDAAYQC--- 79

Query: 319 SVAGSTTVRAFLQVRE 334
            V G       L V+E
Sbjct: 80  -VVGGEKCSTELFVKE 94

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 11/92 (11%)

Query: 78  PSDATVLSGSVVEFVC---RVGGDPLPTILWRRDDGKMPTG--------RAKILDDRSLQ 126
           P   ++    +    C    V G+P PT+ W  +   +           +   + +  L 
Sbjct: 6   PRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLL 65

Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTVH 158
                  + G Y    +N +G+ +   +    
Sbjct: 66  FNKPTHYNNGNYTLIAKNPLGTANQTINGHFL 97

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 12/77 (15%), Positives = 22/77 (28%), Gaps = 2/77 (2%)

Query: 260 LSCFAEGSPLPSVFWTQEGSQVL--MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 317
           +     G+P P++ W   G  +         Y       EG L        + G +   A
Sbjct: 22  IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA 81

Query: 318 LSVAGSTTVRAFLQVRE 334
            +  G+          +
Sbjct: 82  KNPLGTANQTINGHFLK 98

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 3e-06
 Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 7/91 (7%)

Query: 67  EALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQ 126
           E L K     EP   +VL    V   C+    P         +  + + +       S  
Sbjct: 1   EDLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ-----ASSYF 55

Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTV 157
           I+     D G Y C       S  ++  L V
Sbjct: 56  IDAATVNDSGEYRCQTNLSTLSDPVQ--LEV 84

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.5 bits (102), Expect = 4e-06
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 16/97 (16%)

Query: 80  DATVLSGSV---VEFVCR--VGGDPLPTILWRRDDGKM-----------PTGRAKILDDR 123
           D+  + G++   +          D +  + W R    +            +G  +IL + 
Sbjct: 1   DSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG 60

Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLL 160
            L+I+N+   D G Y   V +  G+  L  +L + +L
Sbjct: 61  DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRIL 97

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNA-----YGHLHVTQEGTLRIQGVQKEDAGFF 313
            +  F     +  V W +  + V  F          G   +   G L+I+ + ++D+G +
Sbjct: 16  NIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTY 75

Query: 314 VCSALSVAGSTTVRAFLQVR 333
             +  S  G+  +   L +R
Sbjct: 76  NVTVYSTNGTRILNKALDLR 95

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 4e-06
 Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 3/91 (3%)

Query: 70  IKPFPISEP-SDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDDRSLQI 127
           +KP  +  P     V  G+  +  CR+   D   ++ WR  D  +            L +
Sbjct: 1   VKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA-VQSDTGRSVLTV 59

Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTVH 158
            N      G  +C       +      L V+
Sbjct: 60  RNASLSAAGTRVCVGSCGGRTFQHTVQLLVY 90

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 5e-06
 Identities = 12/91 (13%), Positives = 22/91 (24%), Gaps = 4/91 (4%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRV-GGDPLPTI---LWRRDDGKMPTGRAKILDDRSLQI 127
                 P  +    G  +   C+V GG P   +   L R +             + +  +
Sbjct: 5   ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTV 64

Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTVH 158
                     + C  E  +    L       
Sbjct: 65  LVRRDHHGAQFSCRTELDLRPQGLELFENTS 95

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.8 bits (99), Expect = 7e-06
 Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 1/89 (1%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
              P    I   +  +V L W         +     Y     SS     +        + 
Sbjct: 7   MPVPELLEIEEYSETAVVLHWSLASDADEHL-ITGYYAYYRPSSSAGEYFKATIEGAHAR 65

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPS 498
           S  ++ L+  T Y F +++ ++      S
Sbjct: 66  SFKIAPLETATMYEFKLQSFSAASASEFS 94

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 8e-06
 Identities = 16/117 (13%), Positives = 28/117 (23%), Gaps = 27/117 (23%)

Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY----------------FSSDL 455
                  + T+   + L W    P       ++G+ + Y                  S+ 
Sbjct: 4   ELLKFSYIRTSFDKILLRWEPYWPPDFR--DLLGFMLFYKEAPYQNVTEFDGQDACGSNS 61

Query: 456 QTGWVVAAHR-------ITSTSITVSDLKPDTSYMFIVRAENSHGLG--IPSPVSPI 503
            T   +                  +  LKP T Y   V+   +           S I
Sbjct: 62  WTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDI 118

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 9e-06
 Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 17/92 (18%)

Query: 80  DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL--------------DDRSL 125
               +    V F       PL  +LW++   K+                         SL
Sbjct: 4   QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62

Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTV 157
            I N+   DE  Y  +  N+  ++     L V
Sbjct: 63  TIYNLTSSDEDEYEMESPNITDTMKF--FLYV 92

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 11/81 (13%)

Query: 260 LSCFAEGSPLPSVFWTQEGSQVLM--------FPGNAYGHLHVTQEGTLRIQGVQKEDAG 311
                   PL  V W ++  +V          F          T  G+L I  +   D  
Sbjct: 15  FHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDED 73

Query: 312 FFVCSALSVAGSTTVRAFLQV 332
            +   + ++  +  ++ FL V
Sbjct: 74  EYEMESPNITDT--MKFFLYV 92

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 9e-06
 Identities = 14/100 (14%), Positives = 24/100 (24%), Gaps = 4/100 (4%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGG--VAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
               +   + + T  S+ L W  P        +   +                      T
Sbjct: 4   RPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGT 63

Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTL 507
             S  + DL+  T Y   +             +    RTL
Sbjct: 64  RHSAVLRDLRSGTLYSLTLYGLRGPHKA--DSIQGTARTL 101

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 1/87 (1%)

Query: 76  SEPSDATVLSGSVVEFVCRVGGDPLPTILWR-RDDGKMPTGRAKILDDRSLQIENVGPQD 134
                     G   E  C    +             K  + +  ++  ++L I N+   D
Sbjct: 2   GSYRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGD 61

Query: 135 EGLYICDVENLVGSISLRASLTVHLLR 161
            G+Y C  E  V + ++   +  H+L 
Sbjct: 62  SGVYQCLSEERVKNKTVFQVVAKHVLE 88

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 1e-05
 Identities = 18/88 (20%), Positives = 27/88 (30%), Gaps = 7/88 (7%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
           KP     P    +  G  V   C        +      +G +         + SL I N 
Sbjct: 1   KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE-----TNSSLNIVNA 55

Query: 131 GPQDEGLYICDVENLVGSISLRASLTVH 158
             +D G Y C  + +  S  +   L V 
Sbjct: 56  KFEDSGEYKCQHQQVNESEPVY--LEVF 81

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 1e-05
 Identities = 27/126 (21%), Positives = 40/126 (31%), Gaps = 17/126 (13%)

Query: 381 GETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGV 440
           G +  S +++V  +  P            P  P   V+ N T   V L W + +      
Sbjct: 1   GSSGSSGTVNVTTKKTP------------PSQPPGNVVWNATDTKVLLNWEQVKAMENES 48

Query: 441 APVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPV 500
             V GY V Y      +         T+ +     L     Y+  V+A    G G  S  
Sbjct: 49  -EVTGYKVFYR----TSSQNNVQVLNTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQ 103

Query: 501 SPITRT 506
             I R 
Sbjct: 104 IRIPRI 109

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 22/96 (22%), Positives = 28/96 (29%), Gaps = 5/96 (5%)

Query: 410 PGPPAAP-VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
              P      L    G V L W  P          I Y V+  + +              
Sbjct: 5   LDAPVGLVARLADESGHVVLRWLPPPETPMT--SHIRYEVDVSAGNGAGSVQRVEILEGR 62

Query: 469 TSITVSDLKPDTSYMFIVRA--ENSHGLGIPSPVSP 502
           T   +S+L+  T Y F VRA        G  S  S 
Sbjct: 63  TECVLSNLRGRTRYTFAVRARMAEPSFGGFWSAWSE 98

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 12/97 (12%)

Query: 76  SEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM------------PTGRAKILDDR 123
           S   +  +   + V+  C   G   P + W+ D G                         
Sbjct: 9   SSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPT 68

Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLL 160
            +  ++V  +D G Y C V    G+      + + +L
Sbjct: 69  GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL 105

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 3e-05
 Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 7/99 (7%)

Query: 410 PGPPAAPVILNTTRG--SVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
              P  P  L+      S+ + W    P       V GY + Y                 
Sbjct: 18  TRVPEVPSSLHVRPLVTSIVVSW---TPPENQNIVVRGYAIGY--GIGSPHAQTIKVDYK 72

Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
               T+ +L P + Y+  ++A N+ G GIP   S +TR 
Sbjct: 73  QRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRP 111

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 3e-05
 Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 6/85 (7%)

Query: 73  FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGP 132
           F ++  SD  +L G  +           P++  R   GK           ++L +  +  
Sbjct: 1   FGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ------GGKTLSVSQLEL 54

Query: 133 QDEGLYICDVENLVGSISLRASLTV 157
           QD G + C V      +  +  + V
Sbjct: 55  QDSGTWTCTVLQNQKKVEFKIDIVV 79

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 3e-05
 Identities = 13/91 (14%), Positives = 23/91 (25%), Gaps = 5/91 (5%)

Query: 412 PPAAPVILNTTRGSVTLGW-GEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTS 470
            P    I  T     +                +  Y + +   +    W  A       S
Sbjct: 2   GPVEVFITETPSQPNSHPIQWNAPQPS----HISKYILRWRPKNSVGRWKEATIPGHLNS 57

Query: 471 ITVSDLKPDTSYMFIVRAENSHGLGIPSPVS 501
            T+  LKP   Y   + +   +G    +   
Sbjct: 58  YTIKGLKPGVVYEGQLISIQQYGHQEVTRFD 88

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-05
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 3/89 (3%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK--MPTGRAKILDDRSLQIEN 129
           P    +  +A+V  G  V   C+V G  L    W   + +      ++  L    L + N
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 62

Query: 130 VGP-QDEGLYICDVENLVGSISLRASLTV 157
           V    +     C  EN VG   +   + V
Sbjct: 63  VTSDLNRKNVTCWAENDVGRAEVSVQVNV 91

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.8 bits (95), Expect = 4e-05
 Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 21/103 (20%)

Query: 77  EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--------------------GKMPTGR 116
           E     V   + V  +       L    W + +                    G+  +GR
Sbjct: 5   EAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGR 64

Query: 117 AKILDDRSLQIENVGPQDEGLYICDVENL-VGSISLRASLTVH 158
             I  + SL  + +  +D G+Y  D+ +             VH
Sbjct: 65  EIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVH 107

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.1 bits (80), Expect = 0.004
 Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 1/56 (1%)

Query: 278 GSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR 333
            S +        G   +   G+L  Q +  +D G +             +A ++  
Sbjct: 51  NSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTD-ENYRRTQATVRFH 105

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 5e-05
 Identities = 16/105 (15%), Positives = 33/105 (31%), Gaps = 18/105 (17%)

Query: 71  KPFPISEPSDA-TVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR------ 123
           +P  +S  ++   V  GS ++ +C V G       W+ +   +      + +D       
Sbjct: 1   RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENP 60

Query: 124 ----------SLQIENVGPQDEG-LYICDVENLVGSISLRASLTV 157
                      L I  +  +     + C  +N  G  +    L  
Sbjct: 61  ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 13/85 (15%), Positives = 21/85 (24%), Gaps = 11/85 (12%)

Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ----------EGTLRIQGVQKE 308
           +L C   G      +W   GS +           +  +             L I  ++  
Sbjct: 21  QLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR 80

Query: 309 DAGF-FVCSALSVAGSTTVRAFLQV 332
                F C A +  G       L  
Sbjct: 81  FYKHPFTCFAKNTHGIDAAYIQLIY 105

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.4 bits (93), Expect = 6e-05
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 74  PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDD-RSLQIENVGP 132
           P  + ++ TV     V   C                    T R  +  +   L+I+ +  
Sbjct: 6   PFLQVTNTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKR 65

Query: 133 QDEGLYICDVENLVGSI-SLRASLTVH 158
           +D G Y C++ N V    S    L + 
Sbjct: 66  EDAGEYQCEISNPVSVRRSNSIKLDII 92

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 6e-05
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 7/88 (7%)

Query: 72  PFPISEPSDATVLSGSVVEF-VCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
           PF   EP D  V   +  +     VG     TI+W R   K+              +   
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP-----APSPSVLNVT 56

Query: 131 GPQDEGLYICDVENLVG-SISLRASLTV 157
           G     ++ C+  NL G + S  A++ +
Sbjct: 57  GVTQSTMFSCEAHNLKGLASSRTATVHL 84

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 6e-05
 Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 8/95 (8%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
           P  P     LN T G   L W  P+         I  T            + A    ++ 
Sbjct: 1   PDGPTQLRALNLTEGFAVLHWKPPQNPV--DTYDIQVTAPGAP------PLQAETPGSAV 52

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
              + DL   T+Y   VR      L  P+ ++  T
Sbjct: 53  DYPLHDLVLHTNYTATVRGLRGPNLTSPASITFTT 87

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 6e-05
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 411 GPPAAP----VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI 466
           GPPA P    V    T  ++ + W  P     G++     T     +  Q    V     
Sbjct: 9   GPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQRVAEVIFPTA 68

Query: 467 TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
            ST++ +  L+   +    VR  ++ G  + S V+ + 
Sbjct: 69  DSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVP 106

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 8e-05
 Identities = 12/95 (12%), Positives = 23/95 (24%), Gaps = 2/95 (2%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
                           V L W +      G+  +   +   +  +         H     
Sbjct: 5   DDIVGPVTHEIFENNVVHLMW-QEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALER 63

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
              +  L P   Y   +RA +  G G  +  +   
Sbjct: 64  GCRLRGLSPGN-YSVRIRATSLAGNGSWTEPTYFY 97

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 10/96 (10%), Positives = 15/96 (15%), Gaps = 9/96 (9%)

Query: 72  PFPISEPSDATVLSGSVVEFVCRVGG---DPLPTILWRRDDGKMPTGRAKILDDRS---- 124
              I       V  G      CRV         T+   R +  +                
Sbjct: 3   RQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEAT 62

Query: 125 --LQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
                          + C     + S          
Sbjct: 63  ATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHS 98

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 4/95 (4%)

Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
             PP   ++   T   V L W  PE        + GY +E          +  A   T T
Sbjct: 8   LSPPR-GLVAVRTPRGVLLHWDPPELVPK---RLDGYVLEGRQGSQGWEVLDPAVAGTET 63

Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
            + V  L  D  Y F + A     +  PS  + ++
Sbjct: 64  ELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVS 98

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 12/95 (12%)

Query: 75  ISEPSDATVLSGSVVEFVCRVGGDPLPTILWR-----------RDDGKMPTGRAKILDDR 123
           IS       L G   +  C +   P P  +                  + T   +     
Sbjct: 10  ISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVIS 69

Query: 124 SLQIENVGP-QDEGLYICDVENLVGSISLRASLTV 157
           +L I N+     + +Y C   N  GS +    L  
Sbjct: 70  TLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 104

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 14/93 (15%), Positives = 24/93 (25%), Gaps = 9/93 (9%)

Query: 409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
            P PP+             L W     +         Y V      +++   ++    T 
Sbjct: 4   LPSPPSVWF--EAEFFHHILHWTPIPQQSEST----CYEVALLRYGIESWNSISQCSQTL 57

Query: 469 ---TSITVSDLKPDTSYMFIVRAENSHGLGIPS 498
               +    DL     Y   VRA +       +
Sbjct: 58  SYDLTAVTLDLYHSNGYRARVRAVDGSRHSQWT 90

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 3e-04
 Identities = 9/85 (10%), Positives = 23/85 (27%), Gaps = 6/85 (7%)

Query: 75  ISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQ 133
           + +           +   C       L  + + ++             +    I     +
Sbjct: 6   LLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH----HNSDFHIPKATLK 61

Query: 134 DEGLYICDVENLVGSI-SLRASLTV 157
           D G Y C       ++ S   ++T+
Sbjct: 62  DSGSYFCRGLVGSKNVSSETVNITI 86

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (88), Expect = 4e-04
 Identities = 19/114 (16%), Positives = 28/114 (24%), Gaps = 28/114 (24%)

Query: 73  FPISEPSDA-TVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL----------- 120
           F +  P      L G   E  CR+      T +         +    +            
Sbjct: 3   FRVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQA 62

Query: 121 ----------------DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
                              +L+I+NV   DEG Y C   +          L V 
Sbjct: 63  PEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 116

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 2/63 (3%)

Query: 274 WTQEGSQVLMFPGNAYGHLHVTQEG--TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 331
             Q+  Q   + G          EG   LRIQ V+  D G + C     +        L+
Sbjct: 55  KDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELK 114

Query: 332 VRE 334
           V +
Sbjct: 115 VED 117

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 8e-04
 Identities = 18/87 (20%), Positives = 23/87 (26%), Gaps = 7/87 (8%)

Query: 71  KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
           K     EP    VL    V   CR    P    +    +G +          +       
Sbjct: 4   KAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH-----TQPSYRFKA 58

Query: 131 GPQDEGLYICDVENLVGSISLRASLTV 157
              D G Y C       S  +   LTV
Sbjct: 59  NNNDSGEYTCQTGQTSLSDPVH--LTV 83

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 9/91 (9%)

Query: 77  EPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAK-------ILDDRSLQIE 128
            PS   +  G    F+C+V G      I W   +G+  +   +         D  +L I 
Sbjct: 6   VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIY 65

Query: 129 NVGPQDEGLYICDVENLVGSIS-LRASLTVH 158
           N    D G+Y C V    G+ S    ++ + 
Sbjct: 66  NANIDDAGIYKCVVTAEDGTQSEATVNVKIF 96

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 121 DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLT-VHLL 160
           ++ S+ I  + P DEG Y C V         R  L  V L 
Sbjct: 63  NNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLS 103

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	633
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.71
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.64
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.61
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.6
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.6
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.59
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.59
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.55
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.55
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.53
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.53
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	99.53
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.52
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.52
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.51
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.5
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.5
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.5
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.5
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.5
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.47
d2avga1	110	Cardiac myosin binding protein C, different domain	99.47
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.47
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.46
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.45
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	99.45
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.45
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.45
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.45
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.44
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.44
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.44
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.44
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.43
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	99.43
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.43
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	99.43
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.43
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.43
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.42
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.42
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	99.41
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.41
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.4
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	99.4
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.4
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.4
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.39
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.39
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.38
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.38
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	99.38
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.38
d2crma1	107	Fibronectin type-III domain containing protein 3a,	99.38
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.37
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	99.37
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.37
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.37
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.37
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.36
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.36
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.36
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.36
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.36
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.36
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.36
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	99.36
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	99.36
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.36
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.35
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.35
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.35
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.35
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.35
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.34
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.34
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.34
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.33
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.33
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.33
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.32
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.32
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.32
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.32
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.32
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	99.32
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	99.31
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.31
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.31
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.31
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.31
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.31
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.3
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	99.3
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.3
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	99.3
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.3
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.29
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	99.29
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	99.29
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	99.29
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.29
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.29
d2crza1	97	Fibronectin type-III domain containing protein 3a,	99.29
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.29
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.28
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	99.28
d2crza1	97	Fibronectin type-III domain containing protein 3a,	99.28
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	99.27
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	99.27
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	99.27
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.26
d2crma1	107	Fibronectin type-III domain containing protein 3a,	99.26
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	99.26
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.25
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.25
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.25
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	99.25
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.24
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.24
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.24
d1uena_	125	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.23
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.23
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.23
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	99.23
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.23
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.23
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.22
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.22
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.21
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	99.21
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	99.21
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	99.21
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.2
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.2
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	99.2
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.2
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.2
d1wfua_	120	Fibronectin type 3 and ankyrin repeat domains 1 pr	99.2
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.19
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.19
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	99.19
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	99.19
d2avga1	110	Cardiac myosin binding protein C, different domain	99.18
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.18
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.18
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.18
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	99.18
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.18
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	99.17
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	99.17
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.17
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.16
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.16
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	99.16
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	99.16
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.16
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.16
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.16
d1iarb2	101	Interleukin-4 receptor alpha chain {Human (Homo sa	99.15
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.15
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.15
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.15
d1wfua_	120	Fibronectin type 3 and ankyrin repeat domains 1 pr	99.15
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.15
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.15
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.15
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	99.14
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.14
d2dtge1	102	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.14
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.13
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.13
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.13
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	99.12
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.12
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.12
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	99.12
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.12
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.12
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	99.11
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.11
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.11
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.1
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.1
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.09
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.09
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.09
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.09
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.09
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.09
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.09
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.09
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.08
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	99.08
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.08
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.08
d1uena_	125	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.08
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.08
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.08
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.07
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.07
d1wk0a_	137	Fibronectin type-III domain containing protein 3a,	99.06
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.06
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.06
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.05
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.05
d2cspa1	117	Rim binding protein 2 {Human (Homo sapiens) [TaxId	99.05
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	99.04
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.04
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.04
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.04
d1iarb2	101	Interleukin-4 receptor alpha chain {Human (Homo sa	99.03
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	99.03
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.02
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.02
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.01
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	99.01
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.01
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.01
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.0
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.0
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.99
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	98.99
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	98.99
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.98
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	98.98
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	98.98
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	98.98
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	98.97
d1bqua1	95	Cytokine receptor gp130 cytokine-binding domains {	98.97
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.97
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	98.96
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.96
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	98.96
d1wk0a_	137	Fibronectin type-III domain containing protein 3a,	98.95
d1cd9b1	107	Granulocyte colony-stimulating factor (GC-SF) rece	98.95
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	98.94
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.93
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.92
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.92
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	98.92
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.91
d1bqua1	95	Cytokine receptor gp130 cytokine-binding domains {	98.91
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	98.9
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	98.89
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	98.89
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.88
d2cspa1	117	Rim binding protein 2 {Human (Homo sapiens) [TaxId	98.88
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	98.87
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.87
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.86
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	98.84
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.83
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	98.81
d2dtge1	102	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.81
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.8
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.8
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.79
d1uc6a_	109	Ciliary neurotrophic factor receptor alpha {Human	98.79
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.78
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.78
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.77
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.77
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.74
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	98.72
d1uc6a_	109	Ciliary neurotrophic factor receptor alpha {Human	98.72
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.7
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	98.69
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.66
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.63
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.62
d1cd9b1	107	Granulocyte colony-stimulating factor (GC-SF) rece	98.62
d1fyhb1	98	Interferon-gamma receptor alpha chain {Human (Homo	98.61
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.61
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.58
d3d85d3	94	The p40 domain of interleukin-12 (IL-12 beta chain	98.56
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.48
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.48
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.46
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.41
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.4
d1y6kr1	99	Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa	98.4
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.38
d3d85d3	94	The p40 domain of interleukin-12 (IL-12 beta chain	98.37
d1fyhb1	98	Interferon-gamma receptor alpha chain {Human (Homo	98.37
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.36
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.35
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.32
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.32
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.31
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.28
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.27
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.25
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.24
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.24
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.23
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.23
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.2
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.2
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.2
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.19
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.19
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.18
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.17
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.16
d1y6kr1	99	Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa	98.16
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.16
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.15
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.13
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.11
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.11
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.1
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.08
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.08
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.07
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.06
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.05
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.05
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.04
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.04
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.04
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.03
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.03
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.03
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.02
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.02
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.02
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.01
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.01
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.01
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.99
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.99
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.98
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.96
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.95
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.95
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.95
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.95
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.94
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.93
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.93
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.92
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.92
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.91
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.9
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.89
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.89
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.88
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.88
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.86
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.85
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.85
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.84
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.83
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	97.82
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.81
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.8
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.8
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.79
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.78
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.78
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.76
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.76
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	97.75
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.72
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.72
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.71
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.71
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	97.7
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.69
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.69
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.68
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.64
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.64
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.63
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.63
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.62
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	97.62
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.61
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.61
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.6
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.6
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.59
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	97.58
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.57
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	97.57
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.57
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.57
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.56
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.56
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	97.56
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.56
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.55
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.54
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.54
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.54
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.53
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	97.53
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.52
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.52
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.51
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.51
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.51
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.5
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.5
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.5
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.5
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.49
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.49
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.49
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.48
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.46
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.46
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.46
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.46
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.45
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.45
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.45
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.44
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.44
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.44
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.43
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.43
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.43
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.42
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.42
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.41
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.41
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.41
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.4
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.4
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.4
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.4
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.4
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	97.39
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.39
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.38
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.38
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.38
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.38
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.38
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.37
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.37
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.36
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.36
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.36
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.36
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.36
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.36
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.35
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.34
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.34
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.34
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.32
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.32
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.32
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.32
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.31
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.31
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.31
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.31
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.31
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.31
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.3
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.29
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.29
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.29
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.28
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.27
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.26
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.26
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.26
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.26
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.25
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.25
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.24
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.22
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.22
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.22
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.22
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.21
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.2
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.2
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.19
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.19
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.19
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.18
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.17

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.71  E-value=2.9e-17  Score=125.65  Aligned_cols=89  Identities=26%  Similarity=0.449  Sum_probs=82.2

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSIS  150 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s  150 (633)
                      +|.|+..+.+..+.+|+++.|.|.+.|.|.|.++|+|+|.++..+.+....++.|.|.+++.+|+|.|+|.|.|..|..+
T Consensus         1 kP~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   80 (89)
T d1cs6a4           1 QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVY   80 (89)
T ss_dssp             EEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CCCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeeeeeeEEEEeecccCCEEEEEEEEeCCCEEE
Confidence            48899999999999999999999999999999999999999987766666788999999999999999999999999998


Q ss_pred             EEEEEEEEe
Q psy15127        151 LRASLTVHL  159 (633)
Q Consensus       151 ~~~~l~V~~  159 (633)
                      ..+.|.|.+
T Consensus        81 ~~~~l~V~A   89 (89)
T d1cs6a4          81 ASAELTVQA   89 (89)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEC
Confidence            899998863

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.64  E-value=4.9e-16  Score=118.76  Aligned_cols=86  Identities=29%  Similarity=0.527  Sum_probs=76.1

Q ss_pred             CCeeeeCCCc-eEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceE
Q psy15127         71 KPFPISEPSD-ATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSI  149 (633)
Q Consensus        71 ~p~~~~~~~~-~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~  149 (633)
                      +|.|...|.. +.+.+|+.+.|.|.+.|.|.|.|+|+|+|.++..++... .++.|.|.+++.+|+|.|+|.|.|..|..
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~   80 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATV-TDSGLVIKGVKNGDKGYYGCRATNEHGDK   80 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSSSEEE-ETTEEEESSCCSTTCEEEEEEEEETTEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccccEEE-eeeeEEECCCChhhCEEEEEEEEECCCEE
Confidence            5788877765 578899999999999999999999999999998776554 45579999999999999999999999998


Q ss_pred             EEEEEEEE
Q psy15127        150 SLRASLTV  157 (633)
Q Consensus       150 s~~~~l~V  157 (633)
                      +..+.|.|
T Consensus        81 ~~~~~l~V   88 (89)
T d1biha4          81 YFETLVQV   88 (89)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            88888877

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.61  E-value=1.1e-15  Score=119.33  Aligned_cols=90  Identities=27%  Similarity=0.370  Sum_probs=78.7

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCC-eEEcc---cceEEEccCCCCCCeEEEEEEEeCC
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR-AKILD---DRSLQIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~-~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      +|.|+..|.++.+.+|+.+.|.|.+.|.|.|.|+|+|++..|..+. .....   ...|.|.+++.+|+|.|+|.|.|..
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   80 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY   80 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETT
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECC
Confidence            5899999999999999999999999999999999999999986543 22222   2479999999999999999999999


Q ss_pred             ceEEEEEEEEEEee
Q psy15127        147 GSISLRASLTVHLL  160 (633)
Q Consensus       147 g~~s~~~~l~V~~~  160 (633)
                      |..+..+.|.|...
T Consensus        81 G~~~~~~~l~V~~~   94 (97)
T d1koaa1          81 GTKEEIVFLNVTRH   94 (97)
T ss_dssp             EEEEEEECCEEECS
T ss_pred             CEEEEEEEEEEeec
Confidence            99999999998764

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.60  E-value=2.8e-15  Score=118.11  Aligned_cols=90  Identities=32%  Similarity=0.569  Sum_probs=79.1

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCC-eEEc--c--cceEEEccCCCCCCeEEEEEEEe
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR-AKIL--D--DRSLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~-~~~~--~--~~~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                      .+|.|...|.++.+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+. ....  .  ..+|.|.+++.+|+|.|+|.|.|
T Consensus         7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   86 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN   86 (102)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEE
Confidence            46889999999999999999999999999999999999999997653 3322  1  24799999999999999999999


Q ss_pred             CCceEEEEEEEEEEe
Q psy15127        145 LVGSISLRASLTVHL  159 (633)
Q Consensus       145 ~~g~~s~~~~l~V~~  159 (633)
                      ..|..+..+.|.|..
T Consensus        87 ~~G~~~~~~~L~V~s  101 (102)
T d1fhga_          87 SLGEATCTAELLVET  101 (102)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEEEEE
Confidence            999999999998864

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.9e-15  Score=116.94  Aligned_cols=89  Identities=28%  Similarity=0.322  Sum_probs=78.5

Q ss_pred             CeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCC-eEEcc---cceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127         72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR-AKILD---DRSLQIENVGPQDEGLYICDVENLVG  147 (633)
Q Consensus        72 p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~-~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n~~g  147 (633)
                      |.|+..|.+..+.+|+.+.|.|.+.|.|.+.+.|+|++..+..+. ..+..   ..+|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   80 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLG   80 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSC
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCC
Confidence            678888999999999999999999999999999999999986643 33222   24799999999999999999999999


Q ss_pred             eEEEEEEEEEEee
Q psy15127        148 SISLRASLTVHLL  160 (633)
Q Consensus       148 ~~s~~~~l~V~~~  160 (633)
                      ..+..+.|.|...
T Consensus        81 ~~~~~~~l~V~~~   93 (101)
T d2cqva1          81 SRQAQVNLTVVDK   93 (101)
T ss_dssp             EEECCEEEEEECS
T ss_pred             EEEEEEEEEEEec
Confidence            9999999999986

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=9.3e-16  Score=124.56  Aligned_cols=108  Identities=22%  Similarity=0.207  Sum_probs=87.0

Q ss_pred             ccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeE
Q psy15127        491 SHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKV  570 (633)
Q Consensus       491 ~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~  570 (633)
                      .+|.|+++.....++|.+++|.+|.++                .+..++.++|.|.|++|        ...+|.|++| .
T Consensus         1 ~~G~G~pss~~v~~~T~~~~P~~P~~~----------------~~~~~~~~sv~v~W~~P--------~~~~g~i~~Y-~   55 (117)
T d1wfoa1           1 RIGDGSPSHPPILERTLDDVPGPPMGI----------------LFPEVRTTSVRLIWQPP--------AAPNGIILAY-Q   55 (117)
T ss_dssp             CCCCCCCCCCCSCCCCSCCCCCCCCCC----------------EEEEECSSEEEEECCCC--------SCCCSCCCEE-E
T ss_pred             CccCCCCCCCCEEEECCCCCCcCCCCc----------------EEEEecCCEEEEEEECC--------CCCCCceEEE-e
Confidence            368898876555688999999877777                88899999999999965        4567899999 9


Q ss_pred             EEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        571 VNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       571 i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      |+|+..+...      .|..    .....+..++|+|.+|+|++.|.|+|+|.|..|.|++|+
T Consensus        56 i~y~~~~~~~------~~~~----~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  108 (117)
T d1wfoa1          56 ITHRLNTTTA------NTAT----VEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAE  108 (117)
T ss_dssp             EEEEESSCCC------SCCC----EEEECTTCCEEEEESCCSSSEEEEEEEEECSSCEEEEEE
T ss_pred             eeeeeccCCC------ceEe----EEecCCceEEEEECCCCCCCEEEEEEEEECCCcCCCCcC
Confidence            9998876654      1211    112345688999999999999999999999999999874

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.60  E-value=2.6e-15  Score=115.29  Aligned_cols=88  Identities=32%  Similarity=0.611  Sum_probs=74.7

Q ss_pred             cCCeeeeC-CCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         70 IKPFPISE-PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        70 ~~p~~~~~-~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      .+|.|... |.++.+.+|+.++|.|.+.|.|.|.|+|+|++......  ....++.|.|.+++.+|+|.|+|.|.|..|.
T Consensus         3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   80 (91)
T d1cs6a3           3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK--WLSSEPLLHIQNVDFEDEGTYECEAENIKGR   80 (91)
T ss_dssp             EEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC--CSBSSSEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             cCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceE--eeeeeeEEEeCCCCccCCEEEEEEEEECCCE
Confidence            56777654 78889999999999999999999999999977654332  2334678999999999999999999999999


Q ss_pred             EEEEEEEEEEe
Q psy15127        149 ISLRASLTVHL  159 (633)
Q Consensus       149 ~s~~~~l~V~~  159 (633)
                      .+..+.|.|.+
T Consensus        81 ~~~~~~l~V~A   91 (91)
T d1cs6a3          81 DTYQGRIIIHA   91 (91)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEEC
Confidence            99999998863

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.59  E-value=1.4e-15  Score=117.57  Aligned_cols=89  Identities=19%  Similarity=0.253  Sum_probs=77.5

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEc---ccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKIL---DDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~---~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      .+|.|+..+.++.+.+|+++.|.|.+.|.|.|.+.|+|++..+..+ +....   ....|.|.+++.+|+|.|+|.|.|.
T Consensus         1 l~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~   80 (93)
T d1wiua_           1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNE   80 (93)
T ss_dssp             CCCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEET
T ss_pred             CCCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEEC
Confidence            3789999999999999999999999999999999999999988654 22222   2357999999999999999999999


Q ss_pred             CceEEEEEEEEEE
Q psy15127        146 VGSISLRASLTVH  158 (633)
Q Consensus       146 ~g~~s~~~~l~V~  158 (633)
                      .|..+..+.|.|+
T Consensus        81 ~G~~~~~~~l~V~   93 (93)
T d1wiua_          81 LGEDEAIFEVIVQ   93 (93)
T ss_dssp             TEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEEC
Confidence            9999999988874

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.59  E-value=4.4e-15  Score=115.99  Aligned_cols=90  Identities=28%  Similarity=0.331  Sum_probs=79.0

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEc--cc--ceEEEccCCCCCCeEEEEEEEe
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKIL--DD--RSLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~--~~--~~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                      .+|.|+..+.+..+.+|+.+.|.|.+.|.|.|.++|+|++.++..+ +....  .+  ..|.|.+++.+|+|.|+|.|.|
T Consensus         3 eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N   82 (98)
T d1g1ca_           3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   82 (98)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEE
Confidence            4789999999999999999999999999999999999999998764 32322  12  3799999999999999999999


Q ss_pred             CCceEEEEEEEEEEe
Q psy15127        145 LVGSISLRASLTVHL  159 (633)
Q Consensus       145 ~~g~~s~~~~l~V~~  159 (633)
                      ..|..+..+.|.|..
T Consensus        83 ~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          83 IAGETSSHAFLLVQA   97 (98)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEEEEE
Confidence            999999999999874

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.7e-14  Score=108.65  Aligned_cols=87  Identities=20%  Similarity=0.300  Sum_probs=71.9

Q ss_pred             CCeeeeCCC-ceEEEcCCeEEEEEEEe-ccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         71 KPFPISEPS-DATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        71 ~p~~~~~~~-~~~~~~G~~~~L~C~~~-~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      +|.++..|. ...+.+|+++.|.|.+. +.|.|.++|++.+.++.. .......+.|+|.+++.+|+|.|+|+|.|..|.
T Consensus         2 kP~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~   80 (90)
T d1gsma1           2 KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA-VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT   80 (90)
T ss_dssp             CSEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC-EEEESSEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             cCcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee-eeccCceeeEEcCccChhhCCcEEEEEEeCCCc
Confidence            566666665 47788999999999985 788999999998887743 233334578999999999999999999999999


Q ss_pred             EEEEEEEEEE
Q psy15127        149 ISLRASLTVH  158 (633)
Q Consensus       149 ~s~~~~l~V~  158 (633)
                      .+.++.|.|.
T Consensus        81 ~~~s~~l~Vy   90 (90)
T d1gsma1          81 FQHTVQLLVY   90 (90)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEC
Confidence            9999998874

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=1.3e-14  Score=111.60  Aligned_cols=88  Identities=25%  Similarity=0.352  Sum_probs=74.5

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCC---CCeEEcccceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT---GRAKILDDRSLQIENVGPQDEGLYICDVENLVG  147 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g  147 (633)
                      ++.|...|.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+..   .+.....++.|.|.+++.+|+|.|+|.|.|..+
T Consensus         1 k~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~   80 (92)
T d1epfa2           1 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR   80 (92)
T ss_dssp             CSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred             CcEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcC
Confidence            46788899999999999999999999999999999999987743   245555667899999999999999999999877


Q ss_pred             eEEEEEEEEEE
Q psy15127        148 SISLRASLTVH  158 (633)
Q Consensus       148 ~~s~~~~l~V~  158 (633)
                      .......|.|.
T Consensus        81 ~~~~~~~i~Vi   91 (92)
T d1epfa2          81 GEINFKDIQVI   91 (92)
T ss_dssp             TEEEEEEEEEE
T ss_pred             CEEEEEEEEEE
Confidence            76555566553

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.2e-14  Score=107.89  Aligned_cols=82  Identities=27%  Similarity=0.493  Sum_probs=69.6

Q ss_pred             CeeeeCCCceEEEcCCeEEEEEEEeccCCC-eEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCce-E
Q psy15127         72 PFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS-I  149 (633)
Q Consensus        72 p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p-~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~  149 (633)
                      |.|..+|.+..+.+|+.+.|.|.+.|.|.| .|+|+|||..+....     .+.+.|.....+|+|.|+|.|.|..|. .
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~-----~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~   76 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA-----PSPSVLNVTGVTQSTMFSCEAHNLKGLAS   76 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE-----ESSEEEEECCCSSCEEEEEEEEETTEEEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC-----CcceEEecCCccccEEEEEEEEcCCCcEE
Confidence            789999999999999999999999999988 899999999886532     235667777788999999999999996 4


Q ss_pred             EEEEEEEEE
Q psy15127        150 SLRASLTVH  158 (633)
Q Consensus       150 s~~~~l~V~  158 (633)
                      ++.+.|.|+
T Consensus        77 S~~~~v~Vk   85 (85)
T d1rhfa2          77 SRTATVHLQ   85 (85)
T ss_dssp             CCCEEEEEC
T ss_pred             EEEEEEEEC
Confidence            566777763

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.53  E-value=1.9e-15  Score=116.20  Aligned_cols=85  Identities=29%  Similarity=0.549  Sum_probs=73.4

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCC-eEEc---ccceEEEccCCCCCCeEEEEEEEeCCceE
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR-AKIL---DDRSLQIENVGPQDEGLYICDVENLVGSI  149 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~-~~~~---~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~  149 (633)
                      |+..|.++.+.+|+++.|.|.+.|.|.|.+.|+++|..+..+. ....   ..+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~   81 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQ   81 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBC
T ss_pred             EEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEE
Confidence            5677889999999999999999999999999999999886542 2222   24689999999999999999999999998


Q ss_pred             EEEEEEEEE
Q psy15127        150 SLRASLTVH  158 (633)
Q Consensus       150 s~~~~l~V~  158 (633)
                      +..+.|.|.
T Consensus        82 ~~~~~l~V~   90 (91)
T d1tnna_          82 EAEFTLTIQ   90 (91)
T ss_dssp             CEEEEEECC
T ss_pred             EEEEEEEEE
Confidence            888888875

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=8.3e-15  Score=114.14  Aligned_cols=81  Identities=15%  Similarity=0.094  Sum_probs=66.0

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      .+..+++++|+|+|++|       ..++++.|++| .|+|+..+...       |.....    .....+.|+|+||.++
T Consensus         9 ~v~~~~~~sv~l~W~pP-------~~~~~~~i~~Y-~V~~~~~~~~~-------~~~~~~----~~~~~~~~~v~~L~~~   69 (98)
T d1x5ya1           9 TVEDVTDTTTTLKWRPP-------DRIGAGGIDGY-LVEYCLEGSEE-------WVPANK----EPVERCGFTVKDLPTG   69 (98)
T ss_dssp             EEEEECSSEEEEEEECC-------SCCCSSCCCEE-EEEEEETTCCC-------CEESSS----SCBSSSEEEEECCCTT
T ss_pred             EEEEccCCEEEEEEECC-------CcCCCCCceEE-EEEEEecCcce-------eEEeee----ecCceeEEEECCCcCC
Confidence            78889999999999954       12445689999 99999887654       754432    2345789999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|.|..|.|+||+
T Consensus        70 ~~Y~frV~A~n~~G~s~~s~   89 (98)
T d1x5ya1          70 ARILFRVVGVNIAGRSEPAT   89 (98)
T ss_dssp             CCEEEEEEEEETTEECCCCC
T ss_pred             eEEEEEEEEECCCcCCCCcC
Confidence            99999999999999999874

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=3.1e-14  Score=111.59  Aligned_cols=90  Identities=31%  Similarity=0.473  Sum_probs=74.4

Q ss_pred             cCCeeeeCCCce--EEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC----CeEE--cccceEEEccCCCCCCeEEEEE
Q psy15127         70 IKPFPISEPSDA--TVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG----RAKI--LDDRSLQIENVGPQDEGLYICD  141 (633)
Q Consensus        70 ~~p~~~~~~~~~--~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~----~~~~--~~~~~L~i~~v~~~d~G~Y~C~  141 (633)
                      .||.|...+...  .+..|+++.|.|.+.|.|.|.|+|+++|..+...    ....  ...+.|.|.+++.+|+|.|+|.
T Consensus         2 vPP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (100)
T d1qz1a3           2 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCI   81 (100)
T ss_dssp             EEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEE
T ss_pred             cCCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEE
Confidence            467887766654  4567999999999999999999999999988532    1222  2346899999999999999999


Q ss_pred             EEeCCceEEEEEEEEEEe
Q psy15127        142 VENLVGSISLRASLTVHL  159 (633)
Q Consensus       142 ~~n~~g~~s~~~~l~V~~  159 (633)
                      |.|..|..+..+.|.|..
T Consensus        82 a~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          82 AENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEECCCEEEEEEEEEEEE
Confidence            999999999999998874

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=3.6e-14  Score=108.58  Aligned_cols=84  Identities=30%  Similarity=0.483  Sum_probs=72.1

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEe-ccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEE
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLR  152 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~-~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~  152 (633)
                      +...|....+.+|+++.|.|.+. +.|.+.+.|+|++..+...+. ...++.|+|.+++.+|+|.|+|.|.|..|..+..
T Consensus         5 ~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~   83 (89)
T d1gl4b_           5 TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA-MDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGT   83 (89)
T ss_dssp             EECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTE-EEETTEEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             EEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecccc-EeeceEEEEecCCcccCEEEEEEEEECCCEEEEE
Confidence            34556778899999999999996 678899999999988766553 3456799999999999999999999999999888


Q ss_pred             EEEEEE
Q psy15127        153 ASLTVH  158 (633)
Q Consensus       153 ~~l~V~  158 (633)
                      +.|.|+
T Consensus        84 ~~l~V~   89 (89)
T d1gl4b_          84 ATLHVQ   89 (89)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            888874

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=7.4e-14  Score=106.83  Aligned_cols=84  Identities=17%  Similarity=0.271  Sum_probs=69.6

Q ss_pred             eeCCC-ceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCe-EEcccceEEEccCCCCCCeEEEEEEEeCCceEEEE
Q psy15127         75 ISEPS-DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRA-KILDDRSLQIENVGPQDEGLYICDVENLVGSISLR  152 (633)
Q Consensus        75 ~~~~~-~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~  152 (633)
                      ...|. ...+.+|+.+.|.|.+.|.|.|.++|++++..+..+.. .....+.|.|.+++.+|+|.|+|.|.|..|..+..
T Consensus         4 ~i~P~~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~   83 (90)
T d1vcaa2           4 ETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKG   83 (90)
T ss_dssp             EEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEE
T ss_pred             EEECCCcEEEECCCEEEEEEeccCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEE
Confidence            34444 45567899999999999999999999998876654432 22345689999999999999999999999999999


Q ss_pred             EEEEEE
Q psy15127        153 ASLTVH  158 (633)
Q Consensus       153 ~~l~V~  158 (633)
                      +.|.|.
T Consensus        84 ~~v~V~   89 (90)
T d1vcaa2          84 IQVEIY   89 (90)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999886

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6.2e-14  Score=113.35  Aligned_cols=101  Identities=40%  Similarity=0.727  Sum_probs=84.9

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRA  488 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a  488 (633)
                      .|++|..+.+..++.+++.|+|+++.+   ++.++.+|.|+|+..+....|.........+.++|.+|.|++.|.|+|+|
T Consensus        15 ~P~pP~~~~v~~~~~~sv~l~W~p~~~---~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A   91 (117)
T d1uema_          15 LPGPPSKPQVTDVTKNSVTLSWQPGTP---GTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRA   91 (117)
T ss_dssp             SCBCCCCCEEEEECSSCEEEECCCCBC---SSSCCCEEEEEEEETTTEEEEEEEEEEECSSEEEECSCCTTCEEEEEEEE
T ss_pred             cCcCCCCCEEEEccCCEEEEEEECCCc---CCCCeEEEEEEEeccCCceeeEEeccccccccceECCCCCCCEEEEEEEE
Confidence            467899999999999999999998863   36789999999988766566776655666788999999999999999999


Q ss_pred             EeccccCCCCCCCCceeecCCCCC
Q psy15127        489 ENSHGLGIPSPVSPITRTLGLNSL  512 (633)
Q Consensus       489 ~n~~G~g~~s~~~~~~~t~~~~p~  512 (633)
                      .|..|.|++|..+..++|.+..|.
T Consensus        92 ~N~~G~s~~S~~s~~v~t~~~~Ps  115 (117)
T d1uema_          92 INPQGLSDPSPMSDPVRTQDSGPS  115 (117)
T ss_dssp             EETTEEEEECCCCCCEECCCSSCC
T ss_pred             EeCCcCCCCcCCCcCEEeCCCCcC
Confidence            999999999887655777776654

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.9e-14  Score=106.05  Aligned_cols=76  Identities=21%  Similarity=0.382  Sum_probs=67.2

Q ss_pred             CceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy15127         79 SDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH  158 (633)
Q Consensus        79 ~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~  158 (633)
                      ++..+.+|++++|.|.+.|.|.|.|+|++++..+      ...+..|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~------~~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~   80 (84)
T d2nxyb2           7 SDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL   80 (84)
T ss_dssp             CSSCEETTCCEEEEEECCTTCCCEEEEECTTCCE------EEESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEE
T ss_pred             CCeEEECCCeEEEEEEeEcCCchheEEEeecccc------eeeeeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEEE
Confidence            3556899999999999999999999999976643      3345689999999999999999999999999999999998


Q ss_pred             ee
Q psy15127        159 LL  160 (633)
Q Consensus       159 ~~  160 (633)
                      ..
T Consensus        81 ~~   82 (84)
T d2nxyb2          81 AF   82 (84)
T ss_dssp             CC
T ss_pred             ec
Confidence            76

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.50  E-value=4.1e-14  Score=109.94  Aligned_cols=78  Identities=35%  Similarity=0.572  Sum_probs=66.9

Q ss_pred             eEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-----CeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEE
Q psy15127         81 ATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-----RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASL  155 (633)
Q Consensus        81 ~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-----~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l  155 (633)
                      ..+.+|+++.|.|.+.|.|.|.|+|+|||.++..+     .......++|.|.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   94 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   94 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEE
Confidence            46789999999999999999999999999988542     1222345789999999999999999999999999999988


Q ss_pred             EEE
Q psy15127        156 TVH  158 (633)
Q Consensus       156 ~V~  158 (633)
                      .|.
T Consensus        95 ~Vl   97 (97)
T d3dara1          95 DVV   97 (97)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            873

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=6.2e-14  Score=109.80  Aligned_cols=90  Identities=26%  Similarity=0.364  Sum_probs=71.1

Q ss_pred             ccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127        245 KMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       245 ~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                      ..........|+++.|.|.+.|.|.|.+.|+++|..+................+.|.|.++..+|.|.|+|.|.|..|..
T Consensus        10 ~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   89 (100)
T d1qz1a3          10 QSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQ   89 (100)
T ss_dssp             CSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             CCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEECCCEE
Confidence            33344556789999999999999999999999999875333222222333445689999999999999999999999999


Q ss_pred             EEEEEEEEEe
Q psy15127        325 TVRAFLQVRE  334 (633)
Q Consensus       325 ~~~~~l~v~~  334 (633)
                      +..+.|.|..
T Consensus        90 ~~~~~l~V~~   99 (100)
T d1qz1a3          90 DASIHLKVFA   99 (100)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEEE
Confidence            9999988863

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.3e-15  Score=111.13  Aligned_cols=81  Identities=21%  Similarity=0.237  Sum_probs=67.9

Q ss_pred             CCeee--eCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         71 KPFPI--SEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        71 ~p~~~--~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      +|.|.  ..|.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+...         +.+.+++.+|+|.|+|.|.|..|.
T Consensus         2 ~P~i~~~~~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~---------~~~~~v~~~d~G~Y~C~A~N~~G~   72 (84)
T d2oz4a3           2 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI---------GESVTVTRDLEGTYLCRARSTQGE   72 (84)
T ss_dssp             EEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT---------TSCEECCGGGCEEEEEEEEETTEE
T ss_pred             CCceeecCCCccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee---------eeeeccccCCCCEEEEEEEcCCCE
Confidence            46663  3467889999999999999999999999999998865431         235578899999999999999999


Q ss_pred             EEEEEEEEEEee
Q psy15127        149 ISLRASLTVHLL  160 (633)
Q Consensus       149 ~s~~~~l~V~~~  160 (633)
                      .+..+.|.|..|
T Consensus        73 ~~~~~~l~V~~P   84 (84)
T d2oz4a3          73 VTREVTVNVLSP   84 (84)
T ss_dssp             EEEEEEEEEECC
T ss_pred             EEEEEEEEEECC
Confidence            999999998764

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.47  E-value=4.9e-14  Score=109.03  Aligned_cols=79  Identities=22%  Similarity=0.355  Sum_probs=68.3

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCC-eEEEEeCCccCCCC--CeEE-cccceEEEccCCCCCCeEEEEEEEeCC
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPTG--RAKI-LDDRSLQIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p-~i~W~~~~~~i~~~--~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      .|.|...|.++.+.+|+.+.|.|.+.|.|.| .+.|+++|..+...  .... ..+++|.|.+++.+|+|.|+|.|.|..
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   81 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPA   81 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCC
Confidence            5889999999999999999999999999876 69999999988643  2222 345789999999999999999999999


Q ss_pred             ceE
Q psy15127        147 GSI  149 (633)
Q Consensus       147 g~~  149 (633)
                      |..
T Consensus        82 G~~   84 (94)
T d1biha1          82 GVA   84 (94)
T ss_dssp             EEE
T ss_pred             CEE
Confidence            974

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.8e-13  Score=107.32  Aligned_cols=90  Identities=26%  Similarity=0.352  Sum_probs=73.9

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccC---CCeEEEEeCCccCCC---CC-eEEcc---------cceEEEccCCCCC
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDP---LPTILWRRDDGKMPT---GR-AKILD---------DRSLQIENVGPQD  134 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p---~p~i~W~~~~~~i~~---~~-~~~~~---------~~~L~i~~v~~~d  134 (633)
                      .|.|+..|.++.+.+|++++|.|.+.|.|   .|.|.|+|++.....   +. .....         ...|.|.+++.+|
T Consensus         4 ~~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (110)
T d2avga1           4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (110)
T ss_dssp             TCSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTC
T ss_pred             CCEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHH
Confidence            46788899999999999999999999988   578999998764321   11 11111         2469999999999


Q ss_pred             CeEEEEEEEeCCceEEEEEEEEEEee
Q psy15127        135 EGLYICDVENLVGSISLRASLTVHLL  160 (633)
Q Consensus       135 ~G~Y~C~~~n~~g~~s~~~~l~V~~~  160 (633)
                      +|.|+|.|.|..|..++.+.|.|..+
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          84 TGGYRCEVSTKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEESC
T ss_pred             CcEEEEEEEECCCeEEEEEEEEEEec
Confidence            99999999999999999999999864

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.2e-14  Score=108.12  Aligned_cols=82  Identities=32%  Similarity=0.429  Sum_probs=69.1

Q ss_pred             CCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeE-Ec--c---cceEEEccCCCCCCeEEEEEEEeCCce-E
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAK-IL--D---DRSLQIENVGPQDEGLYICDVENLVGS-I  149 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~-~~--~---~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~  149 (633)
                      .|.++.+.+|+.++|.|.+.+.|.|.+.|+|++..+...... ..  .   ...|.|.+++.+|+|.|+|.|.|..|. .
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   81 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI   81 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEE
T ss_pred             cCeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEE
Confidence            577889999999999999999999999999999998654322 11  1   247999999999999999999999997 4


Q ss_pred             EEEEEEEEE
Q psy15127        150 SLRASLTVH  158 (633)
Q Consensus       150 s~~~~l~V~  158 (633)
                      +..+.|.|.
T Consensus        82 S~~~~l~V~   90 (91)
T d1rhfa1          82 SQPVWLTVE   90 (91)
T ss_dssp             CCCEEEEEE
T ss_pred             EEEEEEEEE
Confidence            677888875

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.7e-14  Score=113.40  Aligned_cols=95  Identities=20%  Similarity=0.196  Sum_probs=77.3

Q ss_pred             ceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCccc
Q psy15127        503 ITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTAST  582 (633)
Q Consensus       503 ~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~  582 (633)
                      .++|.++.|++|.++                ++..++.++|.|+|++|        ...+|.|++| .|+|+..+...  
T Consensus         3 ~v~T~e~vP~~p~~l----------------~~~~~~~~sv~l~W~~P--------~~~ng~i~~Y-~i~~~~~~~~~--   55 (106)
T d1wfna1           3 LVRTHEDVPGPVGHL----------------SFSEILDTSLKVSWQEP--------GEKNGILTGY-RISWEEYNRTN--   55 (106)
T ss_dssp             SCCSSCCSCCCCSCC----------------EEESCCSSEEEEECCCC--------TTCCSCCCEE-EEEEEESSCGG--
T ss_pred             EEEcCCCCCcCCCCc----------------EEEEecCCEEEEEEECC--------CCCCCcEEeE-EEEEEECCCCc--
Confidence            367888888888777                88899999999999965        4567899999 99998876654  


Q ss_pred             ceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        583 AVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       583 ~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                          .|.     ........++++|++|+|++.|.|+|+|.|..|+|++|+
T Consensus        56 ----~~~-----~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~   97 (106)
T d1wfna1          56 ----TRV-----THYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSA   97 (106)
T ss_dssp             ----GCC-----CEEECSSCCEEEEESCCTTCEEEEEEEEECSSCEEEEEE
T ss_pred             ----ceE-----EEecCCCeeEEEEccCCCCCEEEEEEEEECCCCCcCCcC
Confidence                121     112345578999999999999999999999999999874

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.46  E-value=2.9e-13  Score=103.00  Aligned_cols=78  Identities=24%  Similarity=0.534  Sum_probs=66.7

Q ss_pred             eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEE
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  327 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  327 (633)
                      ..+.+.+|+++.|.|.+.|.|.|.+.|+++|..+.      ..+... .++.|.|.++..+|+|.|+|.|.|..|..+..
T Consensus        11 ~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~------~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~   83 (89)
T d1biha4          11 KVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLS------GGRATV-TDSGLVIKGVKNGDKGYYGCRATNEHGDKYFE   83 (89)
T ss_dssp             SEEEECTTSCEEEECEEEEESCCCCEEEETTEECC------SSSEEE-ETTEEEESSCCSTTCEEEEEEEEETTEEEEEE
T ss_pred             CCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCc------cccEEE-eeeeEEECCCChhhCEEEEEEEEECCCEEEEE
Confidence            44667889999999999999999999999999873      123333 34579999999999999999999999999988


Q ss_pred             EEEEE
Q psy15127        328 AFLQV  332 (633)
Q Consensus       328 ~~l~v  332 (633)
                      +.|.|
T Consensus        84 ~~l~V   88 (89)
T d1biha4          84 TLVQV   88 (89)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88876

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=1e-13  Score=109.99  Aligned_cols=82  Identities=18%  Similarity=0.162  Sum_probs=66.7

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      .+..+++++|.|+|.+|        .++++.|++| .|+|+......      .|...   ........++++|.+|+++
T Consensus        18 ~v~~~~~~sv~l~W~p~--------~~~g~~I~~Y-~v~~~~~~~~~------~~~~~---~~~~~~~~~~~~v~~L~p~   79 (108)
T d1x4za1          18 TISTASETSVYVTWIPR--------GNGGFPIQSF-RVEYKKLKKVG------DWILA---TSAIPPSRLSVEITGLEKG   79 (108)
T ss_dssp             EEEECCSSEEEEECCCC--------CCTTSCCCEE-EEEEEESSSCC------CCEEE---EEEECTTCCEEEEESCCTT
T ss_pred             EEEEccCCEEEEEEECC--------CCCCCccEEE-EEEEEecCCCC------ceEEE---EEeecCCccEEEECCCCCC
Confidence            77888999999999854        4567789999 99999876654      35432   2223456889999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|.|..|.|++|+
T Consensus        80 t~Y~frV~A~N~~G~s~~S~   99 (108)
T d1x4za1          80 ISYKFRVRALNMLGESEPSA   99 (108)
T ss_dssp             CEEEEEEEEEETTEECCCCC
T ss_pred             CEEEEEEEEECCCcCCCCCC
Confidence            99999999999999999875

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=1.5e-13  Score=106.78  Aligned_cols=89  Identities=27%  Similarity=0.439  Sum_probs=73.4

Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEE-EeeeeceEEEecCCCCCeEEEEEEE
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAA-HRITSTSITVSDLKPDTSYMFIVRA  488 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~~~Y~~~v~a  488 (633)
                      |++|..+.+...+.+++.|+|.+|...+  +.++.+|.|+|+..+. ..|.... .....+.++|.+|.+++.|.|+|+|
T Consensus         2 P~~P~~~~v~~~~~~sv~l~W~pP~~~~--~~~i~~Y~V~~~~~~~-~~~~~~~~~~~~~~~~~v~~L~~~~~Y~frV~A   78 (98)
T d1x5ya1           2 TSAPQHLTVEDVTDTTTTLKWRPPDRIG--AGGIDGYLVEYCLEGS-EEWVPANKEPVERCGFTVKDLPTGARILFRVVG   78 (98)
T ss_dssp             CCCCEEEEEEEECSSEEEEEEECCSCCC--SSCCCEEEEEEEETTC-CCCEESSSSCBSSSEEEEECCCTTCCEEEEEEE
T ss_pred             CCCCcCcEEEEccCCEEEEEEECCCcCC--CCCceEEEEEEEecCc-ceeEEeeeecCceeEEEECCCcCCeEEEEEEEE
Confidence            5678888888899999999999987653  5789999999998764 4565432 2335678999999999999999999


Q ss_pred             EeccccCCCCCCC
Q psy15127        489 ENSHGLGIPSPVS  501 (633)
Q Consensus       489 ~n~~G~g~~s~~~  501 (633)
                      .|..|.|+++...
T Consensus        79 ~n~~G~s~~s~~~   91 (98)
T d1x5ya1          79 VNIAGRSEPATLL   91 (98)
T ss_dssp             EETTEECCCCCCS
T ss_pred             ECCCcCCCCcCCC
Confidence            9999999887554

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.9e-14  Score=111.12  Aligned_cols=88  Identities=19%  Similarity=0.244  Sum_probs=71.9

Q ss_pred             cCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceee
Q psy15127        507 LGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRI  586 (633)
Q Consensus       507 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~  586 (633)
                      ....|.+|+++                ++..+++++|.|+|++|        ...+|.|.+| .|+|+..+...      
T Consensus         7 ~~~vP~~P~~l----------------~v~~~s~~si~l~W~~P--------~~~~g~i~~Y-~v~~~~~~~~~------   55 (103)
T d1x5ga1           7 EVQLPGPAPNL----------------RAYAASPTSITVTWETP--------VSGNGEIQNY-KLYYMEKGTDK------   55 (103)
T ss_dssp             CSSCCCCCSSC----------------EEEEEETTEEEEECCCC--------SCCSSCCSEE-EEEEEETTCCC------
T ss_pred             CCCCcccCCCc----------------EEEEccCCEEEEEEECC--------cCCCccEEEE-EEEEEeCCCce------
Confidence            34567777777                88999999999999965        4567899999 99999876543      


Q ss_pred             eeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        587 TWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       587 ~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                       |...       ....++++|.||+|++.|.|+|+|.|..|.|++|+
T Consensus        56 -~~~~-------~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~   94 (103)
T d1x5ga1          56 -EQDV-------DVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTP   94 (103)
T ss_dssp             -CCCE-------EECSSEEEECSCCTTCEEEEEEEEECSSCCCCBCC
T ss_pred             -eEEE-------eccccEEecCCCCCCCEEEEEEEEEcCCcCcCCCC
Confidence             3322       12467899999999999999999999999999985

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.3e-14  Score=111.66  Aligned_cols=87  Identities=23%  Similarity=0.239  Sum_probs=74.2

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCC--eEEcccceEEEccCCCCCCe-EEEEEEEeCCc
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR--AKILDDRSLQIENVGPQDEG-LYICDVENLVG  147 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~--~~~~~~~~L~i~~v~~~d~G-~Y~C~~~n~~g  147 (633)
                      .|.|...+.+..+.+|+.+.|.|.+.|.|.|.++|++++..+....  ........|.|.+++.+|+| .|+|.|.|..|
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G   81 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVG   81 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTE
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCCC
Confidence            5889999999999999999999999999999999999998775421  12223468999999999999 79999999999


Q ss_pred             eEEEEEEEEE
Q psy15127        148 SISLRASLTV  157 (633)
Q Consensus       148 ~~s~~~~l~V  157 (633)
                      ..+..+.|.|
T Consensus        82 ~~~~s~~l~V   91 (92)
T d2ifga1          82 RAEVSVQVNV   91 (92)
T ss_dssp             ECCEEECCCC
T ss_pred             EEEEEEEEEE
Confidence            9888887765

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.45  E-value=1.8e-13  Score=109.33  Aligned_cols=89  Identities=35%  Similarity=0.491  Sum_probs=70.5

Q ss_pred             cCCeeeeC-CCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCC-----C--CeE------E----cccceEEEccCC
Q psy15127         70 IKPFPISE-PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT-----G--RAK------I----LDDRSLQIENVG  131 (633)
Q Consensus        70 ~~p~~~~~-~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~-----~--~~~------~----~~~~~L~i~~v~  131 (633)
                      .+|.|... |.++.+.+|+++.|.|.+.|.|.|.|.|+|++.....     +  ...      .    .....|.|.+++
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   82 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT   82 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence            57888765 7889999999999999999999999999997654311     0  000      0    012579999999


Q ss_pred             CCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy15127        132 PQDEGLYICDVENLVGSISLRASLTVH  158 (633)
Q Consensus       132 ~~d~G~Y~C~~~n~~g~~s~~~~l~V~  158 (633)
                      .+|+|.|+|.|.|..|...+.+.|.|.
T Consensus        83 ~~D~G~Y~C~a~N~~G~~~~~~~L~Vl  109 (109)
T d2fdbp2          83 FEDAGEYTCLAGNSIGISFHSAWLTVL  109 (109)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             HHHCeEEEEEEEECCCEEEEEEEEEEC
Confidence            999999999999999999999998873

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=8.4e-13  Score=104.59  Aligned_cols=93  Identities=30%  Similarity=0.437  Sum_probs=76.7

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEee--eeceEEEecCCCCCeEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI--TSTSITVSDLKPDTSYMFIV  486 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~--~~~~~~i~~L~p~~~Y~~~v  486 (633)
                      +|++|..+.+...+.+++.|+|.++.   +++.+|.+|.|+|+..+....|.......  ....+++.+|.|++.|.|+|
T Consensus        10 pP~~P~~~~v~~~~~~sv~l~W~p~~---~~g~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV   86 (108)
T d1x4za1          10 PPEAPDRPTISTASETSVYVTWIPRG---NGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRV   86 (108)
T ss_dssp             CCCCCCCCEEEECCSSEEEEECCCCC---CTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCCTTCEEEEEE
T ss_pred             CCccCCCCEEEEccCCEEEEEEECCC---CCCCccEEEEEEEEecCCCCceEEEEEeecCCccEEEECCCCCCCEEEEEE
Confidence            47788889988899999999998776   34678999999999877666676544333  45689999999999999999


Q ss_pred             EEEeccccCCCCCCCCce
Q psy15127        487 RAENSHGLGIPSPVSPIT  504 (633)
Q Consensus       487 ~a~n~~G~g~~s~~~~~~  504 (633)
                      +|.|.+|.|++|..+..+
T Consensus        87 ~A~N~~G~s~~S~pS~p~  104 (108)
T d1x4za1          87 RALNMLGESEPSAPSRPY  104 (108)
T ss_dssp             EEEETTEECCCCCCCCCE
T ss_pred             EEECCCcCCCCCCCCCCE
Confidence            999999999998766434

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.44  E-value=7e-14  Score=108.73  Aligned_cols=87  Identities=25%  Similarity=0.464  Sum_probs=71.9

Q ss_pred             cCCeeeeCCCceEEEcC---CeEEEEEEEeccCCCeEEEEeCCccCCCC---CeEEcccceEEEccCCCCCCeEEEEEEE
Q psy15127         70 IKPFPISEPSDATVLSG---SVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRSLQIENVGPQDEGLYICDVE  143 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G---~~~~L~C~~~~~p~p~i~W~~~~~~i~~~---~~~~~~~~~L~i~~v~~~d~G~Y~C~~~  143 (633)
                      .+|.|+.+|.+..+.+|   +++.|.|.+.|.|.|.++|+++|..+...   ......+..|.|..+..+|+|.|+|.|.
T Consensus         3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~   82 (97)
T d1cs6a1           3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVAT   82 (97)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEE
T ss_pred             cCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEE
Confidence            57899999999988776   79999999999999999999999988542   3333445678888899999999999999


Q ss_pred             eCCceE-EEEEEEE
Q psy15127        144 NLVGSI-SLRASLT  156 (633)
Q Consensus       144 n~~g~~-s~~~~l~  156 (633)
                      |..|.. +..+.|.
T Consensus        83 N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          83 NARGTVVSREASLR   96 (97)
T ss_dssp             ETTEEEECCCEEEE
T ss_pred             ECCCEEEEEEEEEe
Confidence            999985 4556553

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=9.9e-14  Score=106.96  Aligned_cols=79  Identities=11%  Similarity=0.157  Sum_probs=65.7

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      .+...+.++|.|+|++|        .++++.|.+| .|+|+..+..        |..    .+......++++|.+|+++
T Consensus         8 ~~~~~~~~sv~l~W~~p--------~~~~~~I~~Y-~i~~~~~~~~--------~~~----~~~~~~~~~~~~i~~L~p~   66 (93)
T d2vkwa2           8 GQMGEDGNSIKVNLIKQ--------DDGGSPIRHY-LVRYRALSSE--------WKP----EIRLPSGSDHVMLKSLDWN   66 (93)
T ss_dssp             EEECTTSSCEEEEEECC--------CCTTSCCCEE-EEEEEETTSC--------CCC----CEEECTTCCEEEECSCCTT
T ss_pred             EeEEcCCCEEEEEeeCC--------CCCcCceEEE-EEEeeecCcc--------eee----eeeccCCceEEEEeccccc
Confidence            77888999999999965        5678899999 9999987653        322    2224466889999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|.|..|.|+||.
T Consensus        67 t~Y~~~V~A~N~~G~s~ps~   86 (93)
T d2vkwa2          67 AEYEVYVVAENQQGKSKAAH   86 (93)
T ss_dssp             CEEEEEEEEEETTEECCCEE
T ss_pred             eEEEEEEEEEcCCCCcCCEe
Confidence            99999999999999999973

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.3e-13  Score=105.26  Aligned_cols=89  Identities=22%  Similarity=0.290  Sum_probs=72.8

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCC-eEEEEeCCccCC-------CCCeEEcc---cceEEEccCC-CCCCeE
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMP-------TGRAKILD---DRSLQIENVG-PQDEGL  137 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p-~i~W~~~~~~i~-------~~~~~~~~---~~~L~i~~v~-~~d~G~  137 (633)
                      .||.|...+.+..+.+|+.+.|.|.+.|.|.| .++|+|++....       ..++....   ...|.|.+++ .+|+|.
T Consensus         1 GPP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~   80 (101)
T d3b5ha1           1 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ   80 (101)
T ss_dssp             CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEE
T ss_pred             CCceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEE
Confidence            47899999999999999999999999999887 699999765432       12232222   2479999998 579999


Q ss_pred             EEEEEEeCCceEEEEEEEEEE
Q psy15127        138 YICDVENLVGSISLRASLTVH  158 (633)
Q Consensus       138 Y~C~~~n~~g~~s~~~~l~V~  158 (633)
                      |+|.|.|..|..+..+.|.|.
T Consensus        81 Y~C~A~N~~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          81 YRCNGTSSKGSDQAIITLRVR  101 (101)
T ss_dssp             EEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEECCCEEEEEEEEEEC
Confidence            999999999999999888874

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.43  E-value=4.6e-13  Score=101.78  Aligned_cols=79  Identities=29%  Similarity=0.453  Sum_probs=67.7

Q ss_pred             eEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127        249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  328 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  328 (633)
                      ...+..|+++.|.|.+.|.|.|.+.|++||..+..     ..++.. .++.|.|.++..+|.|.|+|.|.|..|..+.++
T Consensus        10 ~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~-----~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~   83 (89)
T d1cs6a4          10 DTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLAS-----QNRIEV-SGGELRFSKLVLEDSGMYQCVAENKHGTVYASA   83 (89)
T ss_dssp             CEEEETTCCEEEECEEEEESCCEEEEEETTEECCC-----CSSEEE-ETTEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccc-----cceeee-eeeeEEEEeecccCCEEEEEEEEeCCCEEEEEE
Confidence            34567899999999999999999999999998742     233433 456899999999999999999999999999999


Q ss_pred             EEEEE
Q psy15127        329 FLQVR  333 (633)
Q Consensus       329 ~l~v~  333 (633)
                      .|.|+
T Consensus        84 ~l~V~   88 (89)
T d1cs6a4          84 ELTVQ   88 (89)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98885

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.5e-14  Score=111.28  Aligned_cols=94  Identities=13%  Similarity=0.150  Sum_probs=76.2

Q ss_pred             ceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCccc
Q psy15127        503 ITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTAST  582 (633)
Q Consensus       503 ~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~  582 (633)
                      +++|.+.+|.+|..+                ++..++.++|.|+|.+|        .+.++.|.+| +++|+......  
T Consensus         3 vf~T~~~~P~~P~~~----------------~~~~~~~~sv~l~W~pp--------~~~~~~i~~Y-~i~~~~~~~~~--   55 (105)
T d1x3da1           3 IFTTLSCEPDIPNPP----------------RIANRTKNSLTLQWKAP--------SDNGSKIQNF-VLEWDEGKGNG--   55 (105)
T ss_dssp             CCCCCCSCCCCCCCC----------------EEEEEETTEEEEECCCC--------CCCSSCEEEE-EEEECTTTSSS--
T ss_pred             eEECCCCCCcCCCCC----------------EEEEccCCEEEEEEECC--------CCCcCccEEE-EEEEecCCCcc--
Confidence            477888888877777                88899999999999965        5678899999 99997655443  


Q ss_pred             ceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        583 AVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       583 ~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                          .|      .....+..+.+++.+|++++.|.|+|+|.|..|.|++|+
T Consensus        56 ----~~------~~~~~~~~~~~~~~~L~p~t~Y~frV~A~N~~G~s~~S~   96 (105)
T d1x3da1          56 ----EF------CQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSE   96 (105)
T ss_dssp             ----CC------EEEEEESCSEEEEESCCTTCEEEEECCEEESSCBCCCCC
T ss_pred             ----ee------EEEecCCccEEEecCCcCCcEEEEEEEEECCCeEcCCCC
Confidence                11      111234578999999999999999999999999999986

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.43  E-value=1.5e-13  Score=109.10  Aligned_cols=85  Identities=14%  Similarity=0.247  Sum_probs=62.6

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeE-------eecCCccceEE
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMAT-------VMNAATTTSYT  606 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~-------~~~~~~~~~~~  606 (633)
                      .+..+++++|+|+|.+|        .++++.|++| .|+|+......      .|...+...       .......+.++
T Consensus         7 ~v~~~~~~sv~l~W~~P--------~~~g~~I~~Y-~ie~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (107)
T d2ic2a1           7 NVTRLSDESVMLRWMVP--------RNDGLPIVIF-KVQYRMVGKRK------NWQTTNDNIPYGKPKWNSELGKSFTAS   71 (107)
T ss_dssp             EEEECC---EEEEEEEE--------CCSSCCEEEE-EEEEEECC---------CCEEEEEEEECCSCSCSSSSEEEEEEE
T ss_pred             EEEEEECCEEEEEEEeC--------ccccCCceEE-EEEEEeccCCC------cceEEEeeeeccceeeeecccceeEEE
Confidence            56778999999999976        5778999999 99999876544      344332211       11234467899


Q ss_pred             eeccccceeEEEEEeccccccccccCC
Q psy15127        607 VTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       607 i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      |.+|+|++.|.|+|+|.|..|.|++|+
T Consensus        72 i~~L~p~t~Y~frV~A~N~~G~s~~S~   98 (107)
T d2ic2a1          72 VTDLKPQHTYRFRILAVYSNNDNKESN   98 (107)
T ss_dssp             ECSCCSSEEEEEEEEEEETTSCEEECC
T ss_pred             ECCCcCCcEEEEEEEEEcCCCCCCCCC
Confidence            999999999999999999999999985

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.6e-13  Score=109.64  Aligned_cols=100  Identities=20%  Similarity=0.326  Sum_probs=77.2

Q ss_pred             eecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccce
Q psy15127        505 RTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAV  584 (633)
Q Consensus       505 ~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~  584 (633)
                      +|.+++|..||..+               ++..++.+++.|+|++      |.....++.+.+| .+.|+..+...    
T Consensus         2 ~T~~~~P~~pP~~v---------------~v~~~~~~si~l~W~~------p~~~~~~~~i~~y-~v~~~~~~~~~----   55 (109)
T d1va9a1           2 STEEAAPDGPPMDV---------------TLQPVTSQSIQVTWKA------PKKELQNGVIRGY-QIGYRENSPGS----   55 (109)
T ss_dssp             CSSCCCCSSCCEEE---------------EEEECSSSEEEEEEEC------CCSSTTCSCCCEE-EEEEEESSTTS----
T ss_pred             CCcCCCCCCCCcCc---------------EEEEecCCEEEEEEcC------CCCCCCCCcEEEE-EEEEeeccccc----
Confidence            45667776555432               7889999999999994      3445667899999 99999886654    


Q ss_pred             eeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        585 RITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       585 ~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                         +.......+...+...+++|.+|+|++.|.|+|+|.|..|.|++|+
T Consensus        56 ---~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~g~~S~  101 (109)
T d1va9a1          56 ---NGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSS  101 (109)
T ss_dssp             ---CCSCBCCBCCCCSSEEEEEEESCCSSCCEEEEEEEEETTEECCCCC
T ss_pred             ---cceeeeeEEecCCCeeEEEECCCCcceEEEEEEEEEcCCcCCCCCC
Confidence               2222222333456688999999999999999999999999999985

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3e-13  Score=105.87  Aligned_cols=89  Identities=15%  Similarity=0.083  Sum_probs=71.7

Q ss_pred             eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEcc-CceEEEcCCCCCCCeEEEEEEEeCCceeEE
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ-EGTLRIQGVQKEDAGFFVCSALSVAGSTTV  326 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  326 (633)
                      ....+..|+++.|.|.+.|.|.+.+.|+++|..+...  .. .++.... ..+|.|.++..+|+|.|+|.|.|..|..+.
T Consensus         8 ~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~--~~-~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   84 (101)
T d2cqva1           8 EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQES--EH-MKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQA   84 (101)
T ss_dssp             CSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCS--SS-EEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEEC
T ss_pred             CcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccC--Cc-EEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEE
Confidence            3455778999999999999999999999999877421  11 2222222 336999999999999999999999999999


Q ss_pred             EEEEEEEecccCC
Q psy15127        327 RAFLQVREFCVLP  339 (633)
Q Consensus       327 ~~~l~v~~~~~~p  339 (633)
                      ++.|.|.+.|..|
T Consensus        85 ~~~l~V~~~P~pP   97 (101)
T d2cqva1          85 QVNLTVVDKPDPP   97 (101)
T ss_dssp             CEEEEEECSCSCC
T ss_pred             EEEEEEEecCCCc
Confidence            9999999866544

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.3e-13  Score=111.38  Aligned_cols=92  Identities=17%  Similarity=0.204  Sum_probs=72.9

Q ss_pred             ecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCccccee
Q psy15127        506 TLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVR  585 (633)
Q Consensus       506 t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~  585 (633)
                      +..+.|.+|.++                .+..++.++|.|+|++|        .+.++.|++| .|+|+......     
T Consensus        11 ~~~~~P~pP~~~----------------~v~~~~~~sv~l~W~p~--------~~~~~~i~~Y-~v~~~~~~~~~-----   60 (117)
T d1uema_          11 DLSDLPGPPSKP----------------QVTDVTKNSVTLSWQPG--------TPGTLPASAY-IIEAFSQSVSN-----   60 (117)
T ss_dssp             CSCCSCBCCCCC----------------EEEEECSSCEEEECCCC--------BCSSSCCCEE-EEEEEETTTEE-----
T ss_pred             eeCccCcCCCCC----------------EEEEccCCEEEEEEECC--------CcCCCCeEEE-EEEEeccCCce-----
Confidence            345567766666                78889999999999955        5667889999 99988776543     


Q ss_pred             eeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        586 ITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       586 ~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                       .|....     .....+.|+|.+|+|++.|.|+|+|.|..|.|++|+
T Consensus        61 -~~~~~~-----~~~~~~~~~v~~L~p~t~Y~frV~A~N~~G~s~~S~  102 (117)
T d1uema_          61 -SWQTVA-----NHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSP  102 (117)
T ss_dssp             -EEEEEE-----EEECSSEEEECSCCTTCEEEEEEEEEETTEEEEECC
T ss_pred             -eeEEec-----cccccccceECCCCCCCEEEEEEEEEeCCcCCCCcC
Confidence             465332     223468899999999999999999999999999885

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.7e-13  Score=107.40  Aligned_cols=88  Identities=24%  Similarity=0.282  Sum_probs=71.9

Q ss_pred             eeeeCCCceEEEcCCeEEEEEEEeccC---CCeEEEEeCCccCC----CCCeEEcc---------cceEEEccCCCCCCe
Q psy15127         73 FPISEPSDATVLSGSVVEFVCRVGGDP---LPTILWRRDDGKMP----TGRAKILD---------DRSLQIENVGPQDEG  136 (633)
Q Consensus        73 ~~~~~~~~~~~~~G~~~~L~C~~~~~p---~p~i~W~~~~~~i~----~~~~~~~~---------~~~L~i~~v~~~d~G  136 (633)
                      .|+..|.++.+.+|++++|.|.+.|.|   .|.|.|+|++....    ..+.....         ...|.|.+++.+|+|
T Consensus         2 ~F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   81 (113)
T d2dava1           2 LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAG   81 (113)
T ss_dssp             SCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCE
T ss_pred             EEeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCe
Confidence            467789999999999999999999988   57999999875431    11111111         136999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEEee
Q psy15127        137 LYICDVENLVGSISLRASLTVHLL  160 (633)
Q Consensus       137 ~Y~C~~~n~~g~~s~~~~l~V~~~  160 (633)
                      .|+|.|.|..|..++.+.|.|..+
T Consensus        82 ~Y~C~a~N~~G~~~~~~~L~V~~~  105 (113)
T d2dava1          82 NYRCEVTYKDKFDSCSFDLEVHES  105 (113)
T ss_dssp             EEEEEEECSSCEEEECCEEEEECC
T ss_pred             EEEEEEEeCCCEEEEEEEEEEEcC
Confidence            999999999999999999999876

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.42  E-value=3.3e-13  Score=104.74  Aligned_cols=81  Identities=25%  Similarity=0.409  Sum_probs=67.5

Q ss_pred             CCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC--CeEEc----ccceEEEccCCCCCCeEEEEEEEeCCceE-E
Q psy15127         78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG--RAKIL----DDRSLQIENVGPQDEGLYICDVENLVGSI-S  150 (633)
Q Consensus        78 ~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~--~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~-s  150 (633)
                      +.++.+.+|+++.|.|.+.|.|.|.+.|+|+|..+...  .....    ....|.|.+++.+|+|.|+|.|.|..|.. +
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   89 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK   89 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEE
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEE
Confidence            56889999999999999999999999999999988543  11211    23589999999999999999999999974 5


Q ss_pred             EEEEEEEE
Q psy15127        151 LRASLTVH  158 (633)
Q Consensus       151 ~~~~l~V~  158 (633)
                      ..+.|.|.
T Consensus        90 ~s~~L~Vl   97 (97)
T d1biha3          90 HSLKLTVV   97 (97)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEC
Confidence            67888874

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.42  E-value=3.4e-13  Score=104.47  Aligned_cols=81  Identities=21%  Similarity=0.276  Sum_probs=65.7

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.++|.|+|++|      . ...++.|++| .|+|+..+...      .|..    ........++++|.||+|+
T Consensus        14 ~v~~~s~tsv~l~W~~P------~-~~~~~~i~gY-~i~y~~~~~~~------~~~~----~~~~~~~~~~~~i~~L~p~   75 (95)
T d2ibga1          14 EIEEYSETAVVLHWSLA------S-DADEHLITGY-YAYYRPSSSAG------EYFK----ATIEGAHARSFKIAPLETA   75 (95)
T ss_dssp             CCBCCSSSCEEEEEECC------T-TCCGGGCCEE-EEEEEETTCCS------CCEE----EEEECTTCCEEEECSCCTT
T ss_pred             EEEEeCCCEEEEEEEee------e-eccCCccccc-ceeEeeeeecc------eeee----eeccCCceeEEEEeeccCC
Confidence            78899999999999943      1 3457889999 99999876543      2332    2223566889999999999


Q ss_pred             eeEEEEEeccccccccccC
Q psy15127        614 TKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s  632 (633)
                      +.|.|+|+|+|..|+|++|
T Consensus        76 t~Y~~~V~A~n~~G~s~~S   94 (95)
T d2ibga1          76 TMYEFKLQSFSAASASEFS   94 (95)
T ss_dssp             CEEEEEEEEECSSCBCCCC
T ss_pred             eEEEEEEEEEeCCccCCCC
Confidence            9999999999999999998

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.2e-13  Score=111.62  Aligned_cols=102  Identities=16%  Similarity=0.090  Sum_probs=80.3

Q ss_pred             ccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEE
Q psy15127        493 GLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVN  572 (633)
Q Consensus       493 G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~  572 (633)
                      |.|.+|... .++|.+.+|..|+..                .+...+.++|.|.|++      +...+.+|.|++| .|+
T Consensus         1 G~s~~S~~v-~v~T~~~~P~~pp~~----------------~~~~~~~~~i~v~W~~------~~~~~~~g~i~~Y-~v~   56 (117)
T d1wj3a_           1 GSSGSSGTV-NVTTKKTPPSQPPGN----------------VVWNATDTKVLLNWEQ------VKAMENESEVTGY-KVF   56 (117)
T ss_dssp             CCCCCCCCC-CCCCSCCCCCCCCCS----------------CBCCEETTEEEEECCC------CCCCSSSCCEEEE-EEE
T ss_pred             CcCCCCCCE-EEEcCCCCcCCCCcc----------------eEEeecCCEEEEEEee------cccccCCCceeEE-EEE
Confidence            677778777 578999999888876                4556778999999994      3335678899999 999


Q ss_pred             EEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        573 LRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       573 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      |+..+...       |.      +.  .....+.+.+|++++.|.|+|+|.|.+|+|++|+
T Consensus        57 y~~~~~~~-------~~------~~--~~~~~~~~~~L~p~t~Y~~~V~A~n~~G~G~~S~  102 (117)
T d1wj3a_          57 YRTSSQNN-------VQ------VL--NTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSE  102 (117)
T ss_dssp             EEESSCSS-------CE------EE--EESSSEEEEECCCSSCEEEEEEEEESSCCCCBCC
T ss_pred             EEecCCCc-------ee------ee--eceeeEEEeeccCCcEEEEEEEEEcCCccCCCCC
Confidence            98766543       22      11  2345678889999999999999999999999985

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.41  E-value=2.8e-13  Score=102.58  Aligned_cols=82  Identities=15%  Similarity=0.190  Sum_probs=65.9

Q ss_pred             eeCCCceEEEcCCeEEEEEEEec-cCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceE-EEE
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGG-DPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSI-SLR  152 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~-~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~-s~~  152 (633)
                      +.+++...+.+|++++|.|.+.+ .|.+.+.|+|+|..+..    ...+..|.|.+++.+|+|.|+|.|.|..|.. +..
T Consensus         4 ilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~----~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~   79 (88)
T d2fcba2           4 VLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKF----SRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKP   79 (88)
T ss_dssp             EEECSCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEE----ESSCCEEEETTCCGGGCEEEEEEEEETTEEEECCC
T ss_pred             EEeCCCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccc----cccccccccCccCHHHCCeEEEEEEeCCCCEEeee
Confidence            34455667999999999999965 46678999999987632    2234689999999999999999999998874 567


Q ss_pred             EEEEEEee
Q psy15127        153 ASLTVHLL  160 (633)
Q Consensus       153 ~~l~V~~~  160 (633)
                      +.|.|..|
T Consensus        80 v~l~V~~P   87 (88)
T d2fcba2          80 VTITVQAP   87 (88)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEeCC
Confidence            88888765

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.40  E-value=9.3e-13  Score=102.10  Aligned_cols=84  Identities=23%  Similarity=0.324  Sum_probs=69.0

Q ss_pred             eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEE
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  327 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  327 (633)
                      ....+..|+++.|.|.+.|+|.|.+.|++||..+..... ..........++|.|.++..+|+|.|+|.|.|..|..+.+
T Consensus        13 ~~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   91 (97)
T d3dara1          13 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR-IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT   91 (97)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGS-TTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             ccEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCc-eeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEE
Confidence            345677899999999999999999999999998853221 1122233455789999999999999999999999999999


Q ss_pred             EEEEE
Q psy15127        328 AFLQV  332 (633)
Q Consensus       328 ~~l~v  332 (633)
                      +.|.|
T Consensus        92 ~~l~V   96 (97)
T d3dara1          92 YHLDV   96 (97)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88877

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.6e-13  Score=106.78  Aligned_cols=79  Identities=22%  Similarity=0.144  Sum_probs=64.7

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.++|.|.|++|        ...+|.+.+| .|+|+..+...       |. .  ..  ..+..++++|+||+++
T Consensus        11 ~~~~~s~~si~v~W~~P--------~~~~g~i~~Y-~v~y~~~~~~~-------~~-~--~~--~~~~~~~~~i~~L~p~   69 (98)
T d1x5la1          11 RQERAGQTSVSLLWQEP--------EQPNGIILEY-EIKYYEKDKEM-------QS-Y--ST--LKAVTTRATVSGLKPG   69 (98)
T ss_dssp             ECSCBCSSCEEEEECCC--------SCCCSCCCEE-EEEEEESSSCC-------SS-C--EE--EEESSSEEEECSCCTT
T ss_pred             EEEeccCCEEEEEEECC--------CCCCCCEEEE-EEEeecccccc-------ee-e--EE--ecCCceEEEECCCCCC
Confidence            78899999999999965        4567899999 99999876543       11 1  11  2345789999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|.|..|.|++|+
T Consensus        70 t~Y~~~V~a~n~~G~g~~S~   89 (98)
T d1x5la1          70 TRYVFQVRARTSAGCGRFSQ   89 (98)
T ss_dssp             CEEEECEEEEETTEECCCCC
T ss_pred             CEEEEEEEEEcCCCCcCCCC
Confidence            99999999999999999885

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.40  E-value=4.2e-13  Score=102.69  Aligned_cols=79  Identities=25%  Similarity=0.422  Sum_probs=65.8

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEE
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV  326 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  326 (633)
                      +....+.+|+.++|.|.+.|.|.|.+.|++++....        ......++.|.|.++..+|+|.|+|.|.|..|..+.
T Consensus        12 p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~--------~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   83 (91)
T d1cs6a3          12 PADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQT--------SKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTY   83 (91)
T ss_dssp             CSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCS--------CCCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCcEEEecCCcEEEEEEEEEccCCEEEEEecccccc--------eEeeeeeeEEEeCCCCccCCEEEEEEEEECCCEEEE
Confidence            345677889999999999999999999999775331        112234668999999999999999999999999999


Q ss_pred             EEEEEEE
Q psy15127        327 RAFLQVR  333 (633)
Q Consensus       327 ~~~l~v~  333 (633)
                      .+.|.|.
T Consensus        84 ~~~l~V~   90 (91)
T d1cs6a3          84 QGRIIIH   90 (91)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8888875

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.40  E-value=4.9e-13  Score=104.65  Aligned_cols=80  Identities=18%  Similarity=0.304  Sum_probs=61.5

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      .+. ...+++.|+|++|        .+.++.|++| .|+|+......      .|...    .......+++++.+|+|+
T Consensus        13 ~v~-~~~~sv~lsW~pp--------~~~~~~i~~Y-~v~~~~~~~~~------~~~~~----~~~~~~~~~~~~~~L~p~   72 (100)
T d1cfba1          13 GIT-CQADKAEIHWEQQ--------GDNRSPILHY-TIQFNTSFTPA------SWDAA----YEKVPNTDSSFVVQMSPW   72 (100)
T ss_dssp             EEE-ECSSEEEEEEECC--------CCTTSCCCEE-EEEEEESSSTT------CCEEE----EEEEETTCSEEEEECCSS
T ss_pred             EEE-EcCCEEEEEEcCC--------cccccceEEE-EEEEecCCCCc------eeeEE----eeecCCceEEEEecCCCC
Confidence            554 4567999999965        5678899999 99998776543      12211    112234678999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|.|..|.|+||+
T Consensus        73 t~Y~frV~A~n~~G~g~~S~   92 (100)
T d1cfba1          73 ANYTFRVIAFNKIGASPPSA   92 (100)
T ss_dssp             EEEEEEEEEEETTEECCCCC
T ss_pred             CEEEEEEEEEeCCcCCCCcC
Confidence            99999999999999999985

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.39  E-value=4.4e-13  Score=105.90  Aligned_cols=83  Identities=17%  Similarity=0.224  Sum_probs=67.6

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.++|.|+|++      ++....+|.+.+| .|.|+..+...      .|..    ........++++|.+|+++
T Consensus        12 ~~~~~~~~si~v~W~p------~~~~~~ng~i~~Y-~I~y~~~~~~~------~~~~----~~~~~~~~~~~~i~~L~p~   74 (105)
T d1cfba2          12 VGQGTEPNNLVISWTP------MPEIEHNAPNFHY-YVSWKRDIPAA------AWEN----NNIFDWRQNNIVIADQPTF   74 (105)
T ss_dssp             EEECSSTTCEEEECCC------CCGGGTCSSSCEE-EEEEEESSTTC------CCEE----EEECCTTCCEEEECSCCSS
T ss_pred             EEEEccCCeEEEEEeC------CChhhcCceEEEE-EEEeeeecccc------ceeE----EEecCCCccEEEECCCCCC
Confidence            7888899999999993      3346678999999 99999876554      2332    2223566789999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|.|..|+|++|.
T Consensus        75 t~Y~~~V~A~N~~G~gp~S~   94 (105)
T d1cfba2          75 VKYLIKVVAINDRGESNVAA   94 (105)
T ss_dssp             CEEEEEEEEEETTEECSSCC
T ss_pred             CEEEEEEEEEeCCcCCCCCC
Confidence            99999999999999999873

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.39  E-value=5e-13  Score=101.36  Aligned_cols=82  Identities=11%  Similarity=0.177  Sum_probs=66.1

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEe-ccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceE-EE
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSI-SL  151 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~-~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~-s~  151 (633)
                      ++.+++...+.+|++++|.|.+. +.|.+.+.|+|||..+..    ...++.|.|.+++.+|+|.|+|.|.|..+.. +.
T Consensus         5 Lilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~----~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~   80 (89)
T d1fnla2           5 LLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY----FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSE   80 (89)
T ss_dssp             EEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE----EEECCCEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             EEEECCCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccce----eccccccEECccceeccceEEEEEEeCCCCeEEe
Confidence            44556677799999999999986 456668999999987632    2235689999999999999999999998874 56


Q ss_pred             EEEEEEEe
Q psy15127        152 RASLTVHL  159 (633)
Q Consensus       152 ~~~l~V~~  159 (633)
                      .+.|+|.+
T Consensus        81 ~v~itV~E   88 (89)
T d1fnla2          81 TVNITITQ   88 (89)
T ss_dssp             CEEEEEEC
T ss_pred             eEEEEEEe
Confidence            78888875

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.6e-13  Score=111.39  Aligned_cols=97  Identities=19%  Similarity=0.176  Sum_probs=75.9

Q ss_pred             eeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccc
Q psy15127        504 TRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTA  583 (633)
Q Consensus       504 ~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~  583 (633)
                      ++|.++.|..+|..+               ++..++.+++.|+|++      |.....+|.|.+| .|+|+..+...   
T Consensus         4 v~T~~~~P~~~P~~v---------------~~~~~~~~si~v~W~~------p~~~~~ng~i~~Y-~v~y~~~~~~~---   58 (119)
T d1x5ha1           4 VRTLSDVPSAAPQNL---------------SLEVRNSKSIMIHWQP------PAPATQNGQITGY-KIRYRKASRKS---   58 (119)
T ss_dssp             CCCCCSSCCCCCEEE---------------EEECCSSSEEEEEEEC------CCTTTCCSCEEEE-BCEEEETTEEE---
T ss_pred             EEcCCCCCCCCCcCe---------------EEEEecCcEEEEEEEc------ccccCCCCCEEEE-EEEEeeccccc---
Confidence            677888887555432               7888999999999994      4445667899999 99998876543   


Q ss_pred             eeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        584 VRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       584 ~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                          |..    .....+..++++|.+|+|++.|.|+|+|.|..|.|++|+
T Consensus        59 ----~~~----~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~G~~S~  100 (119)
T d1x5ha1          59 ----DVT----ETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATD  100 (119)
T ss_dssp             ----EEE----CCBCCTTCCEEEEECCCSSCEEEEECEEEETTEEEEECC
T ss_pred             ----cee----eeecCCCccEEEeCCCCCCCEEEEEEEEEcCCcCCCCCC
Confidence                211    122446688999999999999999999999999999985

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=6e-13  Score=100.96  Aligned_cols=82  Identities=17%  Similarity=0.246  Sum_probs=67.3

Q ss_pred             eeCCCceEEEcCCeEEEEEEEecc-CCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCce-EEEE
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGD-PLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS-ISLR  152 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~-p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~s~~  152 (633)
                      +.+++...+.+|+.++|.|.+.+. +...+.|||||..+....    ....|.|.+++.+|+|.|+|.|.|..+. .+..
T Consensus         4 ilq~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~----~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~   79 (89)
T d1f2qa2           4 LLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY----ENHNISITNATVEDSGTYYCTGKVWQLDYESEP   79 (89)
T ss_dssp             EEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC----CSSEEEESSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred             EEeCCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc----ccceEEEeeeeeecCcEEEEEEEeCCCCeEeee
Confidence            445566679999999999999665 555899999999875421    3468999999999999999999998877 4678


Q ss_pred             EEEEEEee
Q psy15127        153 ASLTVHLL  160 (633)
Q Consensus       153 ~~l~V~~~  160 (633)
                      +.|+|..+
T Consensus        80 v~i~V~~~   87 (89)
T d1f2qa2          80 LNITVIKA   87 (89)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEEeC
Confidence            88999887

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.3e-12  Score=101.25  Aligned_cols=93  Identities=29%  Similarity=0.442  Sum_probs=76.8

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRA  488 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a  488 (633)
                      .|++|..+.+...+.+++.|+|.+|...   ++++.+|.|+|+..+.. .|..  .......++|.+|.|++.|.|+|+|
T Consensus        10 vP~~P~~l~v~~~s~~si~l~W~~P~~~---~g~i~~Y~v~~~~~~~~-~~~~--~~~~~~~~~i~~L~p~t~Y~~~V~A   83 (103)
T d1x5ga1          10 LPGPAPNLRAYAASPTSITVTWETPVSG---NGEIQNYKLYYMEKGTD-KEQD--VDVSSHSYTINGLKKYTEYSFRVVA   83 (103)
T ss_dssp             CCCCCSSCEEEEEETTEEEEECCCCSCC---SSCCSEEEEEEEETTCC-CCCC--EEECSSEEEECSCCTTCEEEEEEEE
T ss_pred             CcccCCCcEEEEccCCEEEEEEECCcCC---CccEEEEEEEEEeCCCc-eeEE--EeccccEEecCCCCCCCEEEEEEEE
Confidence            5788999999999999999999998743   57899999999987643 3332  2345678999999999999999999


Q ss_pred             EeccccCCCCCCCCceeecC
Q psy15127        489 ENSHGLGIPSPVSPITRTLG  508 (633)
Q Consensus       489 ~n~~G~g~~s~~~~~~~t~~  508 (633)
                      .|..|.|++|... .++|++
T Consensus        84 ~n~~G~g~~S~~v-~v~T~e  102 (103)
T d1x5ga1          84 YNKHGPGVSTPDV-AVRTLS  102 (103)
T ss_dssp             ECSSCCCCBCCCC-CEECCC
T ss_pred             EcCCcCcCCCCCE-EEEcCC
Confidence            9999999998776 466654

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.6e-13  Score=104.13  Aligned_cols=79  Identities=20%  Similarity=0.183  Sum_probs=65.5

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      .+...+.+++.|+|++|        .+.+|.+.+| .|+|+..+...       |.     .+......++|+|.+|+|+
T Consensus         7 ~~~~~~~~sv~l~W~pP--------~~~~g~i~~Y-~i~~~~~~~~~-------~~-----~~~~~~~~~~~~i~~L~p~   65 (94)
T d2dn7a1           7 MISTTAMNTALLQWHPP--------KELPGELLGY-RLQYCRADEAR-------PN-----TIDFGKDDQHFTVTGLHKG   65 (94)
T ss_dssp             EEEECSTTEEEEEEECC--------SSCSSCCCEE-EEEEEETTCSS-------CE-----EEEEETTCCEEEEECCCTT
T ss_pred             eEEEEeCCEEEEEEeCC--------CCCCCceEEE-EEEEEEcCCCC-------cE-----EEEcCCCccEEEEEccCCe
Confidence            45567889999999965        5668899999 99999887654       43     2334467889999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|.|..|.|++|+
T Consensus        66 t~Y~~~V~A~n~~G~g~~s~   85 (94)
T d2dn7a1          66 TTYIFRLAAKNRAGLGEEFE   85 (94)
T ss_dssp             CEEEEEEEEEETTEEEEEEE
T ss_pred             eEEEEEEEEEcCCcCCCCcc
Confidence            99999999999999999874

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=4.5e-13  Score=110.95  Aligned_cols=90  Identities=24%  Similarity=0.451  Sum_probs=71.7

Q ss_pred             CcCCeee-----eCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC----------------------------
Q psy15127         69 LIKPFPI-----SEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG----------------------------  115 (633)
Q Consensus        69 ~~~p~~~-----~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~----------------------------  115 (633)
                      +.||.|.     ..|..+.+.+|++++|.|.+.|.|.|.|.|++++..+...                            
T Consensus         2 q~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (130)
T d1gxea_           2 QEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCET   81 (130)
T ss_dssp             CBCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSC
T ss_pred             CCCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeecc
Confidence            4577764     3456788999999999999999999999999988655211                            


Q ss_pred             --CeEEc---ccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy15127        116 --RAKIL---DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH  158 (633)
Q Consensus       116 --~~~~~---~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~  158 (633)
                        +....   ....|.|.+++.+|+|.|+|.|.|..|..++.+.|.|.
T Consensus        82 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          82 EGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             SSSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence              11111   12469999999999999999999999999999998885

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.9e-13  Score=106.79  Aligned_cols=95  Identities=16%  Similarity=0.086  Sum_probs=72.5

Q ss_pred             eeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccc
Q psy15127        504 TRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTA  583 (633)
Q Consensus       504 ~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~  583 (633)
                      ++|.++.|++|....               .+..+++++|.|+|++|       ..+++..+.+| .++|+......   
T Consensus         4 ~~T~~~~P~~P~~~~---------------~~~~~~~~sv~l~W~~P-------~~~~g~~~~~y-~v~~~~~~~~~---   57 (107)
T d2crma1           4 FTTCPDKPGIPVKPS---------------VKGKIHSHSFKITWDPP-------KDNGGATINKY-VVEMAEGSNGN---   57 (107)
T ss_dssp             CCSCCCCCCCCCCCE---------------EEEEEETTEEEEECCCC-------TTCCSSCCCEE-EEEEEESSSSC---
T ss_pred             EECCCCCCcCCCCCE---------------EEeeecCCEEEEEEEEC-------ccCCcceEEEE-EEEEEeecCCC---
Confidence            567777777776541               44567889999999954       12345678999 99998776654   


Q ss_pred             eeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        584 VRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       584 ~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                         .|.      .......+.++|.||++++.|.|+|+|.|..|.|++|+
T Consensus        58 ---~~~------~~~~~~~~~~~i~~L~p~t~Y~~rV~A~n~~G~s~~S~   98 (107)
T d2crma1          58 ---KWE------MIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSE   98 (107)
T ss_dssp             ---CCE------EEECSSCSEEEECSCCTTSCEEEEEEEEETTEECCCCC
T ss_pred             ---cEE------EeecCCccEEEEeccCCCCEEEEEEEEECCCcCcCCCC
Confidence               232      22345678999999999999999999999999999986

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=8.9e-14  Score=124.34  Aligned_cols=182  Identities=13%  Similarity=0.076  Sum_probs=75.2

Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEE
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAE  489 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~  489 (633)
                      |++|..+.+...+++++.|+|.+|...   ++.+.+|.|+|+..+.....      ..........+.+++.|.+++.|.
T Consensus         3 Ps~P~~~~~~~~s~~si~vsW~pP~~~---ng~i~~Y~V~~~~~~~~~~~------~~~~~~~~~~~~~~~~y~~~v~~~   73 (196)
T d2dtge2           3 PSVPLDPISVSNSSSQIILKWKPPSDP---NGNITHYLVFWERQAEDSEL------FELDYCLKGLKLPSRTWSPPFESE   73 (196)
T ss_dssp             CCCCEEEEEEECSSSCEEEEEECCCCS---SSSCSEEECCEEEECCCCSC------TTCSSSCSCCCCCC----------
T ss_pred             CcCCcCCEEEeccCCEEEEEEECCCCC---CCcEEEEEEEEEcCCCCCce------eEEeeEEeccccceeEEEEEEEEE
Confidence            678889999999999999999998754   57899999999876532211      011222334577889999999999


Q ss_pred             eccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhccee
Q psy15127        490 NSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTK  569 (633)
Q Consensus       490 n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~  569 (633)
                      |..|.+..+...... +....+..+... ...+...        .+.......+.+.|..+        .........| 
T Consensus        74 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-  134 (196)
T d2dtge2          74 DSQKHNQSEYEDSAG-ECCSCPKTDSQI-LKELEES--------SFRKTFEDYLHNVVFVP--------RPSRKRRSLG-  134 (196)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCccccCcCCccce-ecCCCCcccccc-ccCCcCc--------EEEeccCCceeecccCc--------CCCccceEEE-
Confidence            999988665433211 111111111111 0000000        34444556666777633        1112222222 


Q ss_pred             EEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccC
Q psy15127        570 VVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       570 ~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s  632 (633)
                      .+.+.......       +      ........++++|.||+|++.|.|+|.|.|..|.|.++
T Consensus       135 ~~~~~~~~~~~-------~------~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~~~~~~~  184 (196)
T d2dtge2         135 DVGNAGNNEEH-------R------PFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERC  184 (196)
T ss_dssp             ---------CC-------S------CSCEECSCSEEEECSSCSSCEEEECCEEESCSSSSCCB
T ss_pred             EEEeecCCCcc-------E------EEEeccceEEEEECCCCCCCEEEEEEEEEECCCCCCCc
Confidence            22222111111       1      11123457899999999999999999999999999763

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.2e-13  Score=107.11  Aligned_cols=90  Identities=16%  Similarity=0.127  Sum_probs=71.5

Q ss_pred             eeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccc
Q psy15127        504 TRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTA  583 (633)
Q Consensus       504 ~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~  583 (633)
                      +.|..+.|.+|.++                ++..+++++|.|+|++|          .++.+.+| .|+|+..+...   
T Consensus         4 v~T~~~vP~~P~~~----------------~~~~~~~~si~l~W~~p----------~~~~i~~Y-~i~y~~~~~~~---   53 (102)
T d1x5za1           4 VITQTGVPGQPLNF----------------KAEPESETSILLSWTPP----------RSDTIANY-ELVYKDGEHGE---   53 (102)
T ss_dssp             CCCCSCCCCCCEEE----------------EEECSSSSEEEEEEECC----------SCCCCCEE-EECBEESSSCC---
T ss_pred             EECCCCCCcCCCCe----------------EEEEccCCEEEEEEECC----------CCCCccce-EEEEEeCCCCc---
Confidence            45677778777766                88899999999999954          24679999 99998876543   


Q ss_pred             eeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        584 VRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       584 ~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                          |...      .....++|+|.||+|++.|.|+|+|.|..|.|++|+
T Consensus        54 ----~~~~------~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~   93 (102)
T d1x5za1          54 ----EQRI------TIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTA   93 (102)
T ss_dssp             ----CBCC------EECSSSEEEEECCCTTCEEEECEEEECSSCEEEECC
T ss_pred             ----eEEE------EcCCcCEEEECCCCCCCEEEEEEEEEcCCCEeCCCC
Confidence                2211      123467899999999999999999999999999985

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=6.2e-13  Score=103.01  Aligned_cols=87  Identities=21%  Similarity=0.317  Sum_probs=70.4

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEE--cccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKI--LDDRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      +|.+.  +.+..+.+|++++|.|.+.+ +.+.+.|+|+|..+..+....  ...++|.|.+++.+|+|.|+|.|.|..|.
T Consensus         5 ~P~i~--~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~   81 (96)
T d1l6za2           5 QPFLQ--VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSV   81 (96)
T ss_dssp             CCCEE--CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCC
T ss_pred             CCeEE--cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCC
Confidence            45554  45677999999999999865 567999999999987653332  23568999999999999999999999887


Q ss_pred             E-EEEEEEEEEee
Q psy15127        149 I-SLRASLTVHLL  160 (633)
Q Consensus       149 ~-s~~~~l~V~~~  160 (633)
                      . +..+.|.|..+
T Consensus        82 ~~S~~~~L~V~~~   94 (96)
T d1l6za2          82 RRSNSIKLDIIFD   94 (96)
T ss_dssp             EECCCCEEEECCS
T ss_pred             eEEEeEEEEEEcC
Confidence            5 56788999876

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=2e-12  Score=100.32  Aligned_cols=85  Identities=26%  Similarity=0.446  Sum_probs=66.7

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCC-CeEEEEeC-CccCCC--CCeEEc----ccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPL-PTILWRRD-DGKMPT--GRAKIL----DDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~-p~i~W~~~-~~~i~~--~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      +...|....+.+|+++.|.|.+.|.|. +.|.|+|+ +..+..  .+....    ..++|.|.+++.+|+|.|+|.|.|.
T Consensus         3 V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   82 (97)
T d1epfa1           3 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAE   82 (97)
T ss_dssp             EEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeC
Confidence            556788899999999999999999875 79999994 444432  233322    1357999999999999999999999


Q ss_pred             Cce-EEEEEEEEEE
Q psy15127        146 VGS-ISLRASLTVH  158 (633)
Q Consensus       146 ~g~-~s~~~~l~V~  158 (633)
                      .|. .++.+.|.|.
T Consensus        83 ~G~~~~~tv~l~V~   96 (97)
T d1epfa1          83 DGTQSEATVNVKIF   96 (97)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEEE
Confidence            987 4567777775

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.9e-13  Score=106.47  Aligned_cols=88  Identities=17%  Similarity=0.286  Sum_probs=70.7

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCC------------CCeEEcccceEEEccCCCCCCeEE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT------------GRAKILDDRSLQIENVGPQDEGLY  138 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~------------~~~~~~~~~~L~i~~v~~~d~G~Y  138 (633)
                      .+.+...++.+.+.+|++++|.|.+.|.|.|.+.|+|++..+..            .......+++|.|.+++.+|+|.|
T Consensus         4 ~v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   83 (105)
T d1nbqa1           4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTY   83 (105)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEE
T ss_pred             ceEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeE
Confidence            45666777888999999999999999999999999998765421            111222346899999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEE
Q psy15127        139 ICDVENLVGSISLRASLTVH  158 (633)
Q Consensus       139 ~C~~~n~~g~~s~~~~l~V~  158 (633)
                      +|.|.|..|.....+.|.|.
T Consensus        84 ~C~a~n~~G~~~~~~~v~v~  103 (105)
T d1nbqa1          84 TCMVSEEGGNSYGEVKVKLI  103 (105)
T ss_dssp             EEEEEETTSSCEECCEEECC
T ss_pred             EEEEEECCCCEEEEEEEEEE
Confidence            99999999997776666654

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=1.2e-12  Score=102.87  Aligned_cols=88  Identities=19%  Similarity=0.324  Sum_probs=69.9

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCC------------CCeEEcccceEEEccCCCCCCeEE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT------------GRAKILDDRSLQIENVGPQDEGLY  138 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~------------~~~~~~~~~~L~i~~v~~~d~G~Y  138 (633)
                      +|.+...+..+.+.+|+++.|.|.+.+.|.|.|.|+|++.....            .......+++|.|.+++.+|+|.|
T Consensus         1 k~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y   80 (102)
T d1f97a1           1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEY   80 (102)
T ss_dssp             CCEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEE
T ss_pred             CCCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEE
Confidence            46677788889999999999999999999999999996653310            112223456899999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEE
Q psy15127        139 ICDVENLVGSISLRASLTVH  158 (633)
Q Consensus       139 ~C~~~n~~g~~s~~~~l~V~  158 (633)
                      +|.|.|..|.....+.|.|.
T Consensus        81 ~C~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          81 TCMVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             EEEEEETTSSSEEEEEEEEE
T ss_pred             EEEEEECCCCEEEEEEEEEE
Confidence            99999999987666665554

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=5.2e-13  Score=105.25  Aligned_cols=85  Identities=9%  Similarity=0.091  Sum_probs=67.4

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.+++.|+|++|        .+.+|.+.+| .|+|+........  ...|.    .........++++|.+|+++
T Consensus        10 ~~~~~~~~sv~v~W~~P--------~~~~g~i~~Y-~i~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~i~~L~p~   74 (103)
T d1qg3a2          10 AFNVVSSTVTQLSWAEP--------AETNGEITAY-EVCYGLVNDDNRP--IGPMK----KVLVDNPKNRMLLIENLRES   74 (103)
T ss_dssp             EEEEEETTEEEEECCCC--------SCCSSCCCEE-EEEEEEBCTTSCB--CSCCE----EEEECCTTCCEEEECCCCTT
T ss_pred             EEEEecCCEEEEEEEEC--------ccCCCCceEE-EEEeecccccccc--ccceE----EEEecCCCceEEEEeecCCC
Confidence            89999999999999965        5678999999 9999888655411  11121    12234456789999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|.|..|.|++|+
T Consensus        75 t~Y~~~V~A~n~~G~g~~s~   94 (103)
T d1qg3a2          75 QPYRYTVKARNGAGWGPERE   94 (103)
T ss_dssp             CCEEEEEEEEETTEECCCEE
T ss_pred             CEEEEEEEEEcCCccCCCcc
Confidence            99999999999999999863

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.2e-12  Score=102.58  Aligned_cols=90  Identities=18%  Similarity=0.138  Sum_probs=71.6

Q ss_pred             cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcc---------cceEEEccCCCCCCeEE
Q psy15127         68 ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD---------DRSLQIENVGPQDEGLY  138 (633)
Q Consensus        68 v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~---------~~~L~i~~v~~~d~G~Y  138 (633)
                      |..+|.|+....   ...+....|.|.+.|.|.|.|+|+|+|..|..+......         .+.|.|.+++..|+|.|
T Consensus         1 v~~pP~it~~~~---~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   77 (103)
T d1wwbx_           1 VHFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDY   77 (103)
T ss_dssp             CCCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEE
T ss_pred             CccCCeeEEcCC---CccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceE
Confidence            346777643222   235778889999999999999999999998765322211         24699999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEEee
Q psy15127        139 ICDVENLVGSISLRASLTVHLL  160 (633)
Q Consensus       139 ~C~~~n~~g~~s~~~~l~V~~~  160 (633)
                      +|.|.|..|..++.+.|.|...
T Consensus        78 ~C~a~N~~G~~~~~~~v~V~~~   99 (103)
T d1wwbx_          78 TLIAKNEYGKDEKQISAHFMGW   99 (103)
T ss_dssp             EEEEECSSCEEEEEEEECCSCC
T ss_pred             EEEEeccCCEEEEEEEEEEEeC
Confidence            9999999999999999998876

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.8e-13  Score=102.74  Aligned_cols=78  Identities=19%  Similarity=0.178  Sum_probs=65.7

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCC-CeEEEEeCCccCCCCCeEE-cccceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPL-PTILWRRDDGKMPTGRAKI-LDDRSLQIENVGPQDEGLYICDVENLVG  147 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~-p~i~W~~~~~~i~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~n~~g  147 (633)
                      .+|.+...+..+.+.+|++++|.|.+.+.|. +.|+|+|++..+...+... ..+++|.|.+++.+|+|.|+|.|.|..+
T Consensus         5 ~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~   84 (93)
T d1n26a1           5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPA   84 (93)
T ss_dssp             CCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEESSSSCS
T ss_pred             CCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecCCCEEEECCCChhcCEEEEEEECCccc
Confidence            4688888888999999999999999987664 5899999999887654443 4567899999999999999999987643

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.3e-12  Score=102.94  Aligned_cols=90  Identities=14%  Similarity=0.139  Sum_probs=69.7

Q ss_pred             cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEc---c-----cceEEEccCCCCCCeEEE
Q psy15127         68 ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL---D-----DRSLQIENVGPQDEGLYI  139 (633)
Q Consensus        68 v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~---~-----~~~L~i~~v~~~d~G~Y~  139 (633)
                      |..||.++.....   ..+....|.|.+.|.|.|.++|+|+|..+..+.....   .     .+.|.|.+++.+|+|.|+
T Consensus         2 V~~PP~i~~~~~~---~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   78 (105)
T d1wwca_           2 VYYPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT   78 (105)
T ss_dssp             CCCCCCCCCCCCC---CCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred             EEcCCeeEEeCCC---EEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEE
Confidence            4567776543222   2345566888999999999999999999865432211   1     246999999999999999


Q ss_pred             EEEEeCCceEEEEEEEEEEee
Q psy15127        140 CDVENLVGSISLRASLTVHLL  160 (633)
Q Consensus       140 C~~~n~~g~~s~~~~l~V~~~  160 (633)
                      |.|.|..|..+..+.|.|..+
T Consensus        79 C~a~N~~G~~~~~~~v~V~~~   99 (105)
T d1wwca_          79 LIAKNPLGTANQTINGHFLKE   99 (105)
T ss_dssp             EEEEETTEEEEEEEEECCSCC
T ss_pred             EEEEcCCCEEEEEEEEEEEeC
Confidence            999999999999999998876

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6.9e-13  Score=106.28  Aligned_cols=97  Identities=10%  Similarity=0.128  Sum_probs=72.3

Q ss_pred             eeecCCCCCCCcchHHHHHHHhCCceEEeeeee--ecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcc
Q psy15127        504 TRTLGLNSLVPQHLLDEARARLGTKVVNLRELI--PTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTAS  581 (633)
Q Consensus       504 ~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~  581 (633)
                      ..|.+.+|..||..+               ++.  ..+.++|.|+|++|        ...+|.+.+| .++|+...... 
T Consensus         4 ~~T~~~~P~~pP~~~---------------~v~~~~~~~~sv~v~W~~P--------~~~~g~i~~Y-~i~~~~~~~~~-   58 (111)
T d1x5ka1           4 GTTFELVPTSPPKDV---------------TVVSKEGKPKTIIVNWQPP--------SEANGKITGY-IIYYSTDVNAE-   58 (111)
T ss_dssp             SCSCCCCCCSCCEEE---------------EEEECSSCTTCEEEEEECC--------SCCSSCCCEE-EEEEESCSSSC-
T ss_pred             eEeCCCCCCCCCCCc---------------EEEEecCCCCEEEEEEEcc--------ccCCCceeee-EEeeeecCCCC-
Confidence            345666666655432               433  45678999999965        4668899999 99998765543 


Q ss_pred             cceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127        582 TAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       582 ~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                            |...  ......+..++++|.||+|++.|.|+|+|.|..|.|++|+
T Consensus        59 ------~~~~--~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  102 (111)
T d1x5ka1          59 ------IHDW--VIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSE  102 (111)
T ss_dssp             ------TTTS--EEEEESTTCSEEEECSCCSSSEEEEEEEEECSSCBCCCCC
T ss_pred             ------ccee--EEEEeCCCeeEEEECCCCCCCEEEEEEEEEcCCCCcCCCC
Confidence                  2222  1233456788999999999999999999999999999985

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.36  E-value=1e-12  Score=101.06  Aligned_cols=84  Identities=13%  Similarity=0.101  Sum_probs=68.9

Q ss_pred             eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEE
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  327 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  327 (633)
                      ..+.+..|+++.|.|.+.|+|.|.+.|++++..+...  .............|.|.++..+|+|.|+|.|.|..|..+..
T Consensus        10 ~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~   87 (93)
T d1wiua_          10 RKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALA--PELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAI   87 (93)
T ss_dssp             CEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCS--TTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceee--eeeeecccccceeeccccccccccEEEEEEEEECCCEEEEE
Confidence            4567888999999999999999999999999876522  22223333344589999999999999999999999999999


Q ss_pred             EEEEEE
Q psy15127        328 AFLQVR  333 (633)
Q Consensus       328 ~~l~v~  333 (633)
                      +.|.|+
T Consensus        88 ~~l~V~   93 (93)
T d1wiua_          88 FEVIVQ   93 (93)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            888773

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.36  E-value=3.9e-12  Score=98.82  Aligned_cols=83  Identities=22%  Similarity=0.286  Sum_probs=67.2

Q ss_pred             eEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEE-ccCceEEEcCCCCCCCeEEEEEEEeCCceeEEE
Q psy15127        249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV-TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  327 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  327 (633)
                      ...+..|+.+.|.|.+.|+|.|.+.|++|+..+..  ......... .....|.|.++..+|+|.|+|.|.|..|..+..
T Consensus        13 ~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~   90 (98)
T d1g1ca_          13 SQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIER--SDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSH   90 (98)
T ss_dssp             CEEEETTSCEEEEEEEEEESCCEEEEEETTEECCC--CSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             cEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEee--eeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEEEEE
Confidence            35567899999999999999999999999998752  111111111 223379999999999999999999999999999


Q ss_pred             EEEEEE
Q psy15127        328 AFLQVR  333 (633)
Q Consensus       328 ~~l~v~  333 (633)
                      +.|.|+
T Consensus        91 ~~L~V~   96 (98)
T d1g1ca_          91 AFLLVQ   96 (98)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999886

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.9e-13  Score=103.65  Aligned_cols=77  Identities=14%  Similarity=0.149  Sum_probs=63.5

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.++|.|+|++|        ...++.+++| .|+|+......       |.       ......++++|.+|+++
T Consensus         8 ~v~~~s~~si~l~W~~p--------~~~~~~i~~Y-~v~~~~~~~~~-------~~-------~~~~~~~~~~i~~L~p~   64 (93)
T d1x4xa1           8 QVTCRSATCAQVNWEVP--------LSNGTDVTEY-RLEWGGVEGSM-------QI-------CYCGPGLSYEIKGLSPA   64 (93)
T ss_dssp             CCEEEETTEEEEECCCC--------SCSSSCCCEE-EEEEESSTTSC-------CE-------EEEESCSEEEEESCCSS
T ss_pred             EEEEeCCCeEEEEEEec--------ccCCCeeEEE-EEEEccCCCcc-------eE-------eecCCccEEEEccccee
Confidence            67778899999999965        4567899999 99998765543       21       12346788999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|.|..|.|++|+
T Consensus        65 t~Y~~~V~A~n~~G~s~~S~   84 (93)
T d1x4xa1          65 TTYYCRVQALSVVGAGPFSE   84 (93)
T ss_dssp             CEEEEEEEEECSSCCCCBCC
T ss_pred             eEEEEEEEEEECCcCcCCCC
Confidence            99999999999999999985

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.8e-13  Score=104.34  Aligned_cols=79  Identities=11%  Similarity=0.089  Sum_probs=65.3

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.++|+|+|++|        ...+|.|.+| .+.|+......       |..     .......+.++|.+|+|+
T Consensus         8 ~~~~~t~~si~l~W~~p--------~~~~g~i~~Y-~v~~~~~~~~~-------~~~-----~~~~~~~~~~~i~~L~p~   66 (95)
T d2djsa1           8 HQVSATMRSITLSWPQP--------EQPNGIILDY-EIRYYEKEHNE-------FNS-----SMARSQTNTARIDGLRPG   66 (95)
T ss_dssp             EEEEECSSEEEEECCCC--------SCCSSCEEEE-EEEEEETTSCS-------TTC-----EEEEESSSEEEEESCCTT
T ss_pred             EEEeecCCEEEEEEEEC--------CCCCcceEEe-eeeeeeeccCc-------cee-----EeecCCccEEEEeecCCc
Confidence            78889999999999965        4678899999 99998876654       221     112345788999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|.|.+|.|++|+
T Consensus        67 t~Y~~~V~A~n~~G~g~~S~   86 (95)
T d2djsa1          67 MVYVVQVRARTVAGYGKFSG   86 (95)
T ss_dssp             CEEEEEEEEEESSCEEEECC
T ss_pred             cEEEEEEEEEcCCCCCCCCC
Confidence            99999999999999999985

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.2e-13  Score=108.18  Aligned_cols=85  Identities=14%  Similarity=0.147  Sum_probs=67.2

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.++|+|+|++|        .++++.+++| .++|+.......    ..|..  ..........++++|.||+|+
T Consensus        18 ~~~~~~~~sv~l~W~pp--------~~~~~~i~~y-~v~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~v~~L~p~   82 (111)
T d1wisa1          18 GISNIGPRSVTLQFRPG--------YDGKTSISRW-LVEAQVGVVGEG----EEWLL--IHQLSNEPDARSMEVPDLNPF   82 (111)
T ss_dssp             EEESCCSSCEEEEEECC--------CCCSSCCSEE-EEEECBSCCSTT----SCCEE--EEEEESCTTCSEEEECSCCTT
T ss_pred             EEEEcCCCEEEEEEeCC--------CCCCCceeEE-EEeeeecccCCC----cceee--eeeeecccceeEEEeCCCCCC
Confidence            78888999999999965        5678999999 999987655441    11221  123335567889999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|.|..|.|++|+
T Consensus        83 t~Y~frV~A~N~~G~s~~S~  102 (111)
T d1wisa1          83 TCYSFRMRQVNIVGTSPPSQ  102 (111)
T ss_dssp             SEECCCCEEECSSCBCCCCC
T ss_pred             CEEEEEEEEEcCCcCCCCcC
Confidence            99999999999999999885

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.36  E-value=3e-12  Score=100.94  Aligned_cols=99  Identities=16%  Similarity=0.133  Sum_probs=79.1

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEE-eeeeceEEEecCCCCCeEEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAH-RITSTSITVSDLKPDTSYMFIVR  487 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~~~Y~~~v~  487 (633)
                      +..+|..+++...+.+++.|+|+++.... .++++.+|.|.|+..+....|..... ......++|.+|.+++.|.|+|+
T Consensus         4 P~~~P~~v~~~~~~~~si~v~W~p~~~~~-~ng~i~~Y~I~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~   82 (105)
T d1cfba2           4 PFKNPDNVVGQGTEPNNLVISWTPMPEIE-HNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVV   82 (105)
T ss_dssp             CSCCCSCCEEECSSTTCEEEECCCCCGGG-TCSSSCEEEEEEEESSTTCCCEEEEECCTTCCEEEECSCCSSCEEEEEEE
T ss_pred             CCCCCcCeEEEEccCCeEEEEEeCCChhh-cCceEEEEEEEeeeeccccceeEEEecCCCccEEEECCCCCCCEEEEEEE
Confidence            34578889999899999999999865443 25799999999998876666665443 33467899999999999999999


Q ss_pred             EEeccccCCCCCCCCceeecC
Q psy15127        488 AENSHGLGIPSPVSPITRTLG  508 (633)
Q Consensus       488 a~n~~G~g~~s~~~~~~~t~~  508 (633)
                      |.|..|.|++|....+..|.+
T Consensus        83 A~N~~G~gp~S~~~v~~~t~E  103 (105)
T d1cfba2          83 AINDRGESNVAAEEVVGYSGE  103 (105)
T ss_dssp             EEETTEECSSCCCCEEEESSS
T ss_pred             EEeCCcCCCCCCCcEeEcCCC
Confidence            999999999987764445544

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.35  E-value=5.1e-12  Score=98.95  Aligned_cols=83  Identities=24%  Similarity=0.347  Sum_probs=67.9

Q ss_pred             eEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEcc--CceEEEcCCCCCCCeEEEEEEEeCCceeEE
Q psy15127        249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ--EGTLRIQGVQKEDAGFFVCSALSVAGSTTV  326 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  326 (633)
                      ...+..|+.+.|.|.+.|.|.|.+.|+++|..+...   ....+....  ..+|.|.++..+|.|.|+|.|.|..|..+.
T Consensus        17 ~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~---~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   93 (102)
T d1fhga_          17 DMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKES---RHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATC   93 (102)
T ss_dssp             CEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCS---SSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             cEEEecCCcEEEEEEEEeccCCeEEEEeeeccccce---eeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEEEE
Confidence            355678999999999999999999999999987521   112222332  347999999999999999999999999999


Q ss_pred             EEEEEEEe
Q psy15127        327 RAFLQVRE  334 (633)
Q Consensus       327 ~~~l~v~~  334 (633)
                      ++.|.|..
T Consensus        94 ~~~L~V~s  101 (102)
T d1fhga_          94 TAELLVET  101 (102)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEE
Confidence            99998863

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.7e-12  Score=102.20  Aligned_cols=88  Identities=25%  Similarity=0.373  Sum_probs=69.5

Q ss_pred             CeeeeCCCceEEEcCCeEEEEEEEeccC-CCeEEEEeCCccCC---CC-CeEEccc-----ceEEEccCCCCCCeEEEEE
Q psy15127         72 PFPISEPSDATVLSGSVVEFVCRVGGDP-LPTILWRRDDGKMP---TG-RAKILDD-----RSLQIENVGPQDEGLYICD  141 (633)
Q Consensus        72 p~~~~~~~~~~~~~G~~~~L~C~~~~~p-~p~i~W~~~~~~i~---~~-~~~~~~~-----~~L~i~~v~~~d~G~Y~C~  141 (633)
                      +.++..+....+.+|+++.|.|.+.|.| .|.|+|+|++..+.   .. ......+     ..|.|.+++.+|+|.|+|.
T Consensus         4 ~~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   83 (104)
T d2aw2a1           4 QLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCS   83 (104)
T ss_dssp             EECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEE
T ss_pred             cEEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEE
Confidence            4566778888999999999999999988 58999999887663   11 1112211     2599999999999999999


Q ss_pred             EEeCCceE-EEEEEEEEEe
Q psy15127        142 VENLVGSI-SLRASLTVHL  159 (633)
Q Consensus       142 ~~n~~g~~-s~~~~l~V~~  159 (633)
                      |.|..|.. +..+.|.|.+
T Consensus        84 A~N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          84 ANFQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             EEETTEEEECCCEEEEEEC
T ss_pred             EEcCCCeEEEEEEEEEEEE
Confidence            99999985 4578888765

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.35  E-value=3.7e-12  Score=99.52  Aligned_cols=93  Identities=25%  Similarity=0.372  Sum_probs=72.8

Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEe-eeeceEEEecCCCCCeEEEEEEE
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHR-ITSTSITVSDLKPDTSYMFIVRA  488 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~~~Y~~~v~a  488 (633)
                      |++|..+.+. ...+++.|+|+++.+   +++++.+|.|+|+..+....+...... .....+++.+|.|++.|.|+|+|
T Consensus         6 P~~P~~~~v~-~~~~sv~lsW~pp~~---~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~frV~A   81 (100)
T d1cfba1           6 PNAPKLTGIT-CQADKAEIHWEQQGD---NRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRVIA   81 (100)
T ss_dssp             CCCCEEEEEE-ECSSEEEEEEECCCC---TTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEEECCSSEEEEEEEEE
T ss_pred             CCcCcCcEEE-EcCCEEEEEEcCCcc---cccceEEEEEEEecCCCCceeeEEeeecCCceEEEEecCCCCCEEEEEEEE
Confidence            5567777654 566899999999874   368999999999987655555443333 34578999999999999999999


Q ss_pred             EeccccCCCCCCCCceee
Q psy15127        489 ENSHGLGIPSPVSPITRT  506 (633)
Q Consensus       489 ~n~~G~g~~s~~~~~~~t  506 (633)
                      .|..|.|++|..+..++|
T Consensus        82 ~n~~G~g~~S~~s~~vtT   99 (100)
T d1cfba1          82 FNKIGASPPSAHSDSCTT   99 (100)
T ss_dssp             EETTEECCCCCCCCCEEE
T ss_pred             EeCCcCCCCcCCCcCEEe
Confidence            999999999987655554

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=6.6e-13  Score=104.00  Aligned_cols=81  Identities=14%  Similarity=0.107  Sum_probs=61.3

Q ss_pred             eecccceEEEEEEEecCCCcccccchh-hhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccce
Q psy15127        536 IPTASTAVRITWEVSWGSVPQHLLDEA-RARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFT  614 (633)
Q Consensus       536 ~~~~~~si~v~W~~p~~~~p~~~~~~~-~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t  614 (633)
                      ....++++.|.|++|        ...+ ..|++| .|+|+..+...       |.... ..+......+.++|+||++++
T Consensus        11 ~~~~~~sv~l~W~~P--------~~~gg~~I~~Y-~v~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~i~~L~p~t   73 (101)
T d2haza1          11 VEPYSSTAQVQFDEP--------EATGGVPILKY-KAEWRAVGEEV-------WHSKW-YDAKEASMEGIVTIVGLKPET   73 (101)
T ss_dssp             EEECSSCEEEEEECC--------SCCTTSCCCEE-EEEEEETTCCC-------CEEEE-EEHHHHHHHSEEEECSCCTTC
T ss_pred             EEeeCCEEEEEEeCC--------CcCccccEEEE-EEEEeecCCcc-------eeeee-eeeecccceeEEEecCCCCCe
Confidence            345678999999965        3344 469999 99999877654       33221 112223446789999999999


Q ss_pred             eEEEEEeccccccccccCC
Q psy15127        615 KYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       615 ~Y~~~v~a~n~~g~g~~s~  633 (633)
                      .|.|+|+|.|.+|.|++|+
T Consensus        74 ~Y~frV~A~N~~G~g~~S~   92 (101)
T d2haza1          74 TYAVRLAALNGKGLGEISA   92 (101)
T ss_dssp             EEEEEEEEEETTEECCCCC
T ss_pred             EEEEEEEEEeCCcCcCCCC
Confidence            9999999999999999985

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.35  E-value=1.4e-12  Score=101.07  Aligned_cols=86  Identities=17%  Similarity=0.217  Sum_probs=66.5

Q ss_pred             eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCcee-EE
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST-TV  326 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~  326 (633)
                      ..+....|+++.|.|.+.|.|.+.+.|+++|..+.................+|.|.+++.+|+|.|+|.|.|..|.. +.
T Consensus        11 ~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~   90 (97)
T d1biha3          11 KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKH   90 (97)
T ss_dssp             CSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEE
T ss_pred             CCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEE
Confidence            45677889999999999999999999999999875332211111112234589999999999999999999999975 45


Q ss_pred             EEEEEEE
Q psy15127        327 RAFLQVR  333 (633)
Q Consensus       327 ~~~l~v~  333 (633)
                      ++.|.|.
T Consensus        91 s~~L~Vl   97 (97)
T d1biha3          91 SLKLTVV   97 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEC
Confidence            6777763

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4.6e-13  Score=106.26  Aligned_cols=80  Identities=20%  Similarity=0.276  Sum_probs=63.8

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      .+..++.++|.|+|.+|        .++++.|++| .|+|+..+..        |...   .....+..+.++|.||.++
T Consensus        20 ~~~~~~~~sv~l~W~~P--------~~~~~~I~~Y-~v~~~~~~~~--------~~~~---~~~~~~~~~~~~i~~L~p~   79 (108)
T d1wf5a1          20 TLSTVERRAINLTWTKP--------FDGNSPLIRY-ILEMSENNAP--------WTVL---LASVDPKATSVTVKGLVPA   79 (108)
T ss_dssp             EECSSSTTEEEEECCCC--------CCCSSCEEEE-EEEEECTTCC--------CEEE---ESSCCTTCCEEEEESCCTT
T ss_pred             EEEeccCCEEEEEEECC--------CCCCCccEEE-EEEEEeccCC--------ceEE---eeeecCCccEEEECCCCCC
Confidence            45567889999999965        5678899999 9999876543        2211   1123456789999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|.|..|.|++|+
T Consensus        80 t~Y~frV~A~N~~G~s~~S~   99 (108)
T d1wf5a1          80 RSYQFRLCAVNDVGKGQFSK   99 (108)
T ss_dssp             CEEEEEEEEEESSCEEEECC
T ss_pred             CEEEEEEEEEcCCcCCCCcC
Confidence            99999999999999999985

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.7e-12  Score=97.89  Aligned_cols=80  Identities=14%  Similarity=0.157  Sum_probs=66.2

Q ss_pred             eEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127        249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  328 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  328 (633)
                      .+....|+.+.|.|.+.|.|+|.+.|++++..+.     ..........+.|.|.++..+|+|.|+|.|.|..|..+.++
T Consensus        10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~-----~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~   84 (90)
T d1vcaa2          10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL-----NGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGI   84 (90)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCC-----SSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEE
T ss_pred             cEEEECCCEEEEEEeccCCCCceEEEEecCccce-----eeeeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEE
Confidence            3455789999999999999999999999886542     11223344556899999999999999999999999999999


Q ss_pred             EEEEE
Q psy15127        329 FLQVR  333 (633)
Q Consensus       329 ~l~v~  333 (633)
                      .|.|.
T Consensus        85 ~v~V~   89 (90)
T d1vcaa2          85 QVEIY   89 (90)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88874

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.3e-12  Score=97.99  Aligned_cols=72  Identities=15%  Similarity=0.168  Sum_probs=63.6

Q ss_pred             EecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy15127        251 IWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL  330 (633)
Q Consensus       251 ~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  330 (633)
                      .+.+|++++|.|.+.|.|+|.+.|++++..+.            .....|.|.++..+|+|.|+|.|.|..|..+..+.|
T Consensus        10 ~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~------------~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v   77 (84)
T d2nxyb2          10 HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI------------QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI   77 (84)
T ss_dssp             CEETTCCEEEEEECCTTCCCEEEEECTTCCEE------------EESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEECCCeEEEEEEeEcCCchheEEEeecccce------------eeeeeeeeeecccccccEEEEEEEeCCCEEEEEEEE
Confidence            45689999999999999999999999876542            245589999999999999999999999999999999


Q ss_pred             EEEe
Q psy15127        331 QVRE  334 (633)
Q Consensus       331 ~v~~  334 (633)
                      .|..
T Consensus        78 ~V~~   81 (84)
T d2nxyb2          78 VVLA   81 (84)
T ss_dssp             CEEC
T ss_pred             EEEe
Confidence            8874

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.34  E-value=9.7e-13  Score=102.10  Aligned_cols=84  Identities=19%  Similarity=0.219  Sum_probs=67.0

Q ss_pred             eEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127        249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  328 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  328 (633)
                      ...+.+|+.+.|.|.+.|.|.|.+.|+++|..+...  .............|.|.++..+|+|.|+|.|.|..|..+.++
T Consensus        10 ~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   87 (97)
T d1koaa1          10 GTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS--VKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIV   87 (97)
T ss_dssp             CCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSB--TTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTEEEEEEE
T ss_pred             CEEEeCCCcEEEEEEEEEcCCCEEEEEEeeecccee--eEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCCEEEEEE
Confidence            345678999999999999999999999999987522  111111111233699999999999999999999999999999


Q ss_pred             EEEEEe
Q psy15127        329 FLQVRE  334 (633)
Q Consensus       329 ~l~v~~  334 (633)
                      .|.|..
T Consensus        88 ~l~V~~   93 (97)
T d1koaa1          88 FLNVTR   93 (97)
T ss_dssp             CCEEEC
T ss_pred             EEEEee
Confidence            998874

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=8.1e-13  Score=104.83  Aligned_cols=88  Identities=33%  Similarity=0.517  Sum_probs=67.6

Q ss_pred             CCCCCCcEEE--EeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEE--eeeeceEEEecCCCCCeEEEE
Q psy15127        410 PGPPAAPVIL--NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAH--RITSTSITVSDLKPDTSYMFI  485 (633)
Q Consensus       410 p~~p~~~~~~--~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~~~Y~~~  485 (633)
                      |++|..+...  ....+++.|+|.+|.+   ++++|.+|.|+|+..+.  .|.....  ....+.++|.+|.|++.|.|+
T Consensus        11 P~~P~~p~~~~~~~~~~sv~l~W~~P~~---~~~~I~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~~i~~L~p~t~Y~fr   85 (108)
T d1wf5a1          11 PHAPEHPVATLSTVERRAINLTWTKPFD---GNSPLIRYILEMSENNA--PWTVLLASVDPKATSVTVKGLVPARSYQFR   85 (108)
T ss_dssp             CCCCSSCEEEECSSSTTEEEEECCCCCC---CSSCEEEEEEEEECTTC--CCEEEESSCCTTCCEEEEESCCTTCEEEEE
T ss_pred             CCCCCCCEEEEEeccCCEEEEEEECCCC---CCCccEEEEEEEEeccC--CceEEeeeecCCccEEEECCCCCCCEEEEE
Confidence            4456665443  4567899999999863   46889999999997653  3333222  224578999999999999999


Q ss_pred             EEEEeccccCCCCCCCC
Q psy15127        486 VRAENSHGLGIPSPVSP  502 (633)
Q Consensus       486 v~a~n~~G~g~~s~~~~  502 (633)
                      |+|.|..|.|++|....
T Consensus        86 V~A~N~~G~s~~S~~~~  102 (108)
T d1wf5a1          86 LCAVNDVGKGQFSKDTE  102 (108)
T ss_dssp             EEEEESSCEEEECCCCS
T ss_pred             EEEEcCCcCCCCcCCcC
Confidence            99999999999987764

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.33  E-value=3.6e-12  Score=100.90  Aligned_cols=92  Identities=27%  Similarity=0.418  Sum_probs=68.5

Q ss_pred             CCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEee------------eeceEEEecCCCC
Q psy15127        412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI------------TSTSITVSDLKPD  479 (633)
Q Consensus       412 ~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~------------~~~~~~i~~L~p~  479 (633)
                      ||..+.+..++.+++.|+|.+|.+   ++.+|.+|.|+|+..+....|.......            ....++|.+|.|+
T Consensus         2 PP~~p~v~~~~~~sv~l~W~~P~~---~g~~I~~Y~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~   78 (107)
T d2ic2a1           2 PPTPPNVTRLSDESVMLRWMVPRN---DGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQ   78 (107)
T ss_dssp             CCCCCEEEECC---EEEEEEEECC---SSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCSS
T ss_pred             cCcCCEEEEEECCEEEEEEEeCcc---ccCCceEEEEEEEeccCCCcceEEEeeeeccceeeeecccceeEEEECCCcCC
Confidence            355667888899999999999973   3689999999999877666675443221            2457999999999


Q ss_pred             CeEEEEEEEEeccccCCCCCCCCceee
Q psy15127        480 TSYMFIVRAENSHGLGIPSPVSPITRT  506 (633)
Q Consensus       480 ~~Y~~~v~a~n~~G~g~~s~~~~~~~t  506 (633)
                      +.|.|||.|.|+.|.|++|..+..+.+
T Consensus        79 t~Y~frV~A~N~~G~s~~S~~s~~~~~  105 (107)
T d2ic2a1          79 HTYRFRILAVYSNNDNKESNTSAKFYL  105 (107)
T ss_dssp             EEEEEEEEEEETTSCEEECCCCCCEEE
T ss_pred             cEEEEEEEEEcCCCCCCCCCCCCCEEc
Confidence            999999999999999998877644433

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.6e-12  Score=99.47  Aligned_cols=87  Identities=23%  Similarity=0.287  Sum_probs=65.3

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEE-e--CCccCCCCCeEEcc----cceEEEccCCCCCCeEEEEEEE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWR-R--DDGKMPTGRAKILD----DRSLQIENVGPQDEGLYICDVE  143 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~-~--~~~~i~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~~~  143 (633)
                      .|.|. .+.++.+.+|++++|.|.+.|.|.|.+.|+ +  ++..+...+.....    .++|.|.+++.+|+|.|+|.|.
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   80 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR   80 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEE
Confidence            57886 589999999999999999999987764433 2  23333322222221    2579999999999999999999


Q ss_pred             eCCceE-EEEEEEEEE
Q psy15127        144 NLVGSI-SLRASLTVH  158 (633)
Q Consensus       144 n~~g~~-s~~~~l~V~  158 (633)
                      |..|.. +..+.|.|+
T Consensus        81 N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          81 TEGGVGISNYAELVVK   96 (96)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             eCCCeEEEEEEEEEEC
Confidence            999985 565788874

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=2.5e-12  Score=98.05  Aligned_cols=80  Identities=25%  Similarity=0.322  Sum_probs=65.8

Q ss_pred             ceeEEecCCceEEEEEEEe-eecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeE
Q psy15127        247 ASLLIWNHPRVNRLSCFAE-GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT  325 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~-g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  325 (633)
                      .....+.+|+++.|.|.+. +.|.+.+.|++++..+..      .+ ....++.|.|.++..+|+|.|+|.|.|..|..+
T Consensus         9 p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~------~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~   81 (89)
T d1gl4b_           9 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP------SR-AMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQ   81 (89)
T ss_dssp             CCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCC------TT-EEEETTEEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred             CCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeec------cc-cEeeceEEEEecCCcccCEEEEEEEEECCCEEE
Confidence            3456778999999999997 577889999999876531      11 233467899999999999999999999999999


Q ss_pred             EEEEEEEE
Q psy15127        326 VRAFLQVR  333 (633)
Q Consensus       326 ~~~~l~v~  333 (633)
                      .++.|.|+
T Consensus        82 ~~~~l~V~   89 (89)
T d1gl4b_          82 GTATLHVQ   89 (89)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEC
Confidence            98888773

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.4e-12  Score=99.16  Aligned_cols=87  Identities=20%  Similarity=0.230  Sum_probs=72.2

Q ss_pred             eCCCceEEEcCCeEEEEEEEe-ccCCCeEEEEeCCccCCC----CCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEE
Q psy15127         76 SEPSDATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKMPT----GRAKILDDRSLQIENVGPQDEGLYICDVENLVGSIS  150 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~-~~p~p~i~W~~~~~~i~~----~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s  150 (633)
                      ..|..+.+.+|+.+.|.|.+. +.|.+.|.|+|++..+..    ..+....++.|.|.+++.+|+|.|+|.|.|..|...
T Consensus         7 ~~~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~   86 (101)
T d1iray1           7 EEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLR   86 (101)
T ss_dssp             ECCCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEE
T ss_pred             CCCcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeEE
Confidence            356677889999999999885 678999999999876532    223444567999999999999999999999999999


Q ss_pred             EEEEEEEEeecc
Q psy15127        151 LRASLTVHLLRD  162 (633)
Q Consensus       151 ~~~~l~V~~~~p  162 (633)
                      ..+.|.|....|
T Consensus        87 ~~~~L~V~~~~p   98 (101)
T d1iray1          87 IKISAKFVENEP   98 (101)
T ss_dssp             EEEEEEEECCCT
T ss_pred             EEEEEEEEeCCC
Confidence            999999987533

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=1.8e-12  Score=101.57  Aligned_cols=84  Identities=14%  Similarity=0.107  Sum_probs=67.8

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      .+..++.++|+|+|+.|      +....++.+.+| .|.|+..+...       +....  .....+...+++|.+|+++
T Consensus         9 ~~~~~s~tsi~v~W~~~------~~~~~~~~i~~Y-~v~y~~~~~~~-------~~~~~--~~~~~~~~~~~~i~~L~p~   72 (101)
T d1x4ya1           9 FTDAVNETTIMLKWMYI------PASNNNTPIHGF-YIYYRPTDSDN-------DSDYK--KDMVEGDRYWHSISHLQPE   72 (101)
T ss_dssp             EEECSSSSCEEEEEECC------CTTSCCCCCCEE-EEEECCTTSCS-------GGGCC--CEEEETTCCEEEECSCCTT
T ss_pred             EEEEEcCCEEEEEEecC------cccccccceEEE-EEEeeecccee-------eeeee--EEEEcCCeeEEEEcCCCCC
Confidence            78899999999999943      335678999999 99999876554       22222  2223466789999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|+|..|+|++|+
T Consensus        73 t~Y~~~v~a~n~~G~s~~S~   92 (101)
T d1x4ya1          73 TSYDIKMQCFNEGGESEFSN   92 (101)
T ss_dssp             CEEEEEEEEECTTCCCCCCC
T ss_pred             CEEEEEEEEEcCCCCCCCCC
Confidence            99999999999999999986

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.2e-12  Score=100.61  Aligned_cols=87  Identities=18%  Similarity=0.208  Sum_probs=70.5

Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEE
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAE  489 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~  489 (633)
                      |++|..+.+.....+++.|+|.++.+   ++.+|.+|.|+|+..+.. .+.........+.++|.+|.|++.|.|+|+|.
T Consensus         1 P~~P~~~~~~~~~~~sv~l~W~~p~~---~~~~I~~Y~i~~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~   76 (93)
T d2vkwa2           1 PSAPKLEGQMGEDGNSIKVNLIKQDD---GGSPIRHYLVRYRALSSE-WKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAE   76 (93)
T ss_dssp             CCCCEEEEEECTTSSCEEEEEECCCC---TTSCCCEEEEEEEETTSC-CCCCEEECTTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCccCEeEEcCCCEEEEEeeCCCC---CcCceEEEEEEeeecCcc-eeeeeeccCCceEEEEeccccceEEEEEEEEE
Confidence            45687888888899999999999973   468999999999987642 22222334456789999999999999999999


Q ss_pred             eccccCCCCCC
Q psy15127        490 NSHGLGIPSPV  500 (633)
Q Consensus       490 n~~G~g~~s~~  500 (633)
                      |..|.|+++..
T Consensus        77 N~~G~s~ps~~   87 (93)
T d2vkwa2          77 NQQGKSKAAHF   87 (93)
T ss_dssp             ETTEECCCEEE
T ss_pred             cCCCCcCCEeE
Confidence            99999998743

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.32  E-value=3.4e-13  Score=103.25  Aligned_cols=84  Identities=20%  Similarity=0.348  Sum_probs=68.1

Q ss_pred             eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEE
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  327 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  327 (633)
                      ..+.+.+|+++.|.|.+.|.|.|.+.|+++|..+..  ..............|.|.++..+|+|.|+|.|.|..|..+..
T Consensus         7 ~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~--~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   84 (91)
T d1tnna_           7 RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLST--SARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAE   84 (91)
T ss_dssp             CCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCS--SSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEE
T ss_pred             cCEEEeCCCcEEEEEEEEEEeCCeEEEEEeeccccc--ccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEEE
Confidence            446778899999999999999999999999987642  222222233345689999999999999999999999999888


Q ss_pred             EEEEEE
Q psy15127        328 AFLQVR  333 (633)
Q Consensus       328 ~~l~v~  333 (633)
                      +.|.|.
T Consensus        85 ~~l~V~   90 (91)
T d1tnna_          85 FTLTIQ   90 (91)
T ss_dssp             EEEECC
T ss_pred             EEEEEE
Confidence            888774

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.8e-12  Score=101.41  Aligned_cols=81  Identities=15%  Similarity=0.070  Sum_probs=65.4

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      .+..++.++|.|+|++|       ..+.++.+.+| .|.|+..+...       |..    ........++++|.+|+|+
T Consensus        18 ~~~~~~~~sv~lsW~~P-------~~~~~~~i~~Y-~v~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~L~p~   78 (107)
T d1x5fa1          18 VASLVSTRFIKLTWRTP-------ASDPHGDNLTY-SVFYTKEGIAR-------ERV----ENTSHPGEMQVTIQNLMPA   78 (107)
T ss_dssp             EEEEECSSCEEEEEECC-------SSCSSCCSSEE-EEEEEETTCCC-------CEE----EECSSTTCSEEEECSCCTT
T ss_pred             EEEEecCCEEEEEEECC-------ccCCCCceEEE-EEEEEeCCCCc-------eEE----EEEeCCCccEEEecCCCCC
Confidence            88999999999999954       13467899999 99998765554       211    2224456889999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|.|..|.|++|+
T Consensus        79 t~Y~~rV~A~n~~G~g~~S~   98 (107)
T d1x5fa1          79 TVYIFRVMAQNKHGSGESSA   98 (107)
T ss_dssp             CEEEEEEEEECSSCEEEECC
T ss_pred             CEEEEEEEEEeCCCCcCCCC
Confidence            99999999999999999885

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=8e-13  Score=104.33  Aligned_cols=80  Identities=18%  Similarity=0.226  Sum_probs=62.5

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      .+..+++++|.|+|++|       ..+++..+.+| .++|+......       |....    ......+.+++.||+++
T Consensus        10 ~~~~~t~~sv~lsW~~P-------~~~~g~~i~~y-~~~~~~~~~~~-------~~~~~----~~~~~~~~~~i~~L~p~   70 (104)
T d1bpva_          10 VPLNITRHTVTLKWAKP-------EYTGGFKITSY-IVEKRDLPNGR-------WLKAN----FSNILENEFTVSGLTED   70 (104)
T ss_dssp             EEEEEETTEEEEECCCC-------SCCTTCCCSCC-EEEEEETTSCC-------CEECC----CSCCCSSEEEECSCCSS
T ss_pred             EEEEecCCEEEEEEEec-------cccCcceEEEE-EEEeecccccc-------eeEEE----eeccceeEEEEcCCCCC
Confidence            67778899999999955       12445689999 99998876654       33221    12345788999999999


Q ss_pred             eeEEEEEeccccccc-cccC
Q psy15127        614 TKYEFFLVPFFKTVE-GARL  632 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~-g~~s  632 (633)
                      +.|.|+|+|.|..|+ |++|
T Consensus        71 t~Y~frV~A~n~~G~~s~~S   90 (104)
T d1bpva_          71 AAYEFRVIAKNAAGAISPPS   90 (104)
T ss_dssp             CCEEEEEEEECTTSCEEEEE
T ss_pred             CEEEEEEEEEECCCCCCCCc
Confidence            999999999999997 6666

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=9.9e-12  Score=97.96  Aligned_cols=95  Identities=21%  Similarity=0.288  Sum_probs=77.6

Q ss_pred             CCCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEE
Q psy15127        407 GLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIV  486 (633)
Q Consensus       407 ~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v  486 (633)
                      ...|++|..+.+...+.+++.|+|.+|..   ++.++..|.|+++.......+. .........+.+.+|.|++.|.|+|
T Consensus         8 ~~~P~~P~~~~~~~~~~~sv~l~W~pp~~---~~~~i~~Y~i~~~~~~~~~~~~-~~~~~~~~~~~~~~L~p~t~Y~frV   83 (105)
T d1x3da1           8 SCEPDIPNPPRIANRTKNSLTLQWKAPSD---NGSKIQNFVLEWDEGKGNGEFC-QCYMGSQKQFKITKLSPAMGCKFRL   83 (105)
T ss_dssp             CSCCCCCCCCEEEEEETTEEEEECCCCCC---CSSCEEEEEEEECTTTSSSCCE-EEEEESCSEEEEESCCTTCEEEEEC
T ss_pred             CCCCcCCCCCEEEEccCCEEEEEEECCCC---CcCccEEEEEEEecCCCcceeE-EEecCCccEEEecCCcCCcEEEEEE
Confidence            34578899999999999999999999974   3689999999998665444333 3344467889999999999999999


Q ss_pred             EEEeccccCCCCCCCCceee
Q psy15127        487 RAENSHGLGIPSPVSPITRT  506 (633)
Q Consensus       487 ~a~n~~G~g~~s~~~~~~~t  506 (633)
                      +|.|..|.|++|... .+.|
T Consensus        84 ~A~N~~G~s~~S~~~-~~~T  102 (105)
T d1x3da1          84 SARNDYGTSGFSEEV-LYYT  102 (105)
T ss_dssp             CEEESSCBCCCCCCE-EEEC
T ss_pred             EEECCCeEcCCCCcE-EEEC
Confidence            999999999998776 4555

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.31  E-value=9.9e-13  Score=103.50  Aligned_cols=82  Identities=21%  Similarity=0.265  Sum_probs=64.8

Q ss_pred             CeeeeCCCceEEEcCCeEEEEEEE-eccCCCeEEEEeCCccCCC---CCeEE-cccceEEEccCCCCCCeEEEEEEEeCC
Q psy15127         72 PFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPT---GRAKI-LDDRSLQIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus        72 p~~~~~~~~~~~~~G~~~~L~C~~-~~~p~p~i~W~~~~~~i~~---~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      ++....+..+.+.+|+.+.|.|.+ .+.|.|.|+|+|++..+..   .+... ..++.|.|.+++.+|+|.|+|.|.|..
T Consensus         5 ~F~~~~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   84 (105)
T d1cs6a2           5 EFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHI   84 (105)
T ss_dssp             CCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEE
T ss_pred             cccCCCCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECC
Confidence            333444556889999999999997 6889999999999987632   23333 346789999999999999999999988


Q ss_pred             ceEEEEE
Q psy15127        147 GSISLRA  153 (633)
Q Consensus       147 g~~s~~~  153 (633)
                      |..+..+
T Consensus        85 g~~~~~v   91 (105)
T d1cs6a2          85 DFITKSV   91 (105)
T ss_dssp             TTEEEEE
T ss_pred             CCEEEEE
Confidence            8765543

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.6e-12  Score=99.12  Aligned_cols=78  Identities=21%  Similarity=0.416  Sum_probs=63.5

Q ss_pred             ceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCC--CCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127         80 DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT--GRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV  157 (633)
Q Consensus        80 ~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V  157 (633)
                      ...+.+|+++.|.|.+.+ +.|.+.|+++|..+..  .++....++.|.|.+++.+|+|.|+|.|.|..+..+....|.+
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l~~   84 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAK   84 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEE
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEEEEE
Confidence            467899999999999987 6689999999998754  3455566789999999999999999999998887554444444


Q ss_pred             E
Q psy15127        158 H  158 (633)
Q Consensus       158 ~  158 (633)
                      .
T Consensus        85 ~   85 (92)
T d1olza1          85 H   85 (92)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.9e-12  Score=102.11  Aligned_cols=84  Identities=15%  Similarity=0.248  Sum_probs=67.3

Q ss_pred             CCCceEEEcCCeEEEEE---EEeccCCCeEEEEeCCccCCCCCeEEc---c--------cceEEEccCCCCCCeEEEEEE
Q psy15127         77 EPSDATVLSGSVVEFVC---RVGGDPLPTILWRRDDGKMPTGRAKIL---D--------DRSLQIENVGPQDEGLYICDV  142 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C---~~~~~p~p~i~W~~~~~~i~~~~~~~~---~--------~~~L~i~~v~~~d~G~Y~C~~  142 (633)
                      .|.++.+.+|..+.+.|   .+.|.|.|.++|+|+|..|..+.....   .        ...|.|.++..+|+|.|+|.|
T Consensus         3 ~p~~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A   82 (107)
T d1he7a_           3 MPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLA   82 (107)
T ss_dssp             CCCCCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEE
T ss_pred             CCCEeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEE
Confidence            35566676676666555   889999999999999999865432211   1        146999999999999999999


Q ss_pred             EeCCceEEEEEEEEEEee
Q psy15127        143 ENLVGSISLRASLTVHLL  160 (633)
Q Consensus       143 ~n~~g~~s~~~~l~V~~~  160 (633)
                      .|..|..++.+.|.|..+
T Consensus        83 ~N~~G~~~~~i~v~v~~~  100 (107)
T d1he7a_          83 ANPFGQASASIMAAFMDN  100 (107)
T ss_dssp             EETTEEEEEEEEECCCSC
T ss_pred             EeCCCEEEEEEEEEEEcC
Confidence            999999999999999887

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.1e-13  Score=99.58  Aligned_cols=75  Identities=24%  Similarity=0.348  Sum_probs=62.2

Q ss_pred             cccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCce
Q psy15127        244 RKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  323 (633)
Q Consensus       244 ~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  323 (633)
                      ........+.+|+.+.|.|.+.|+|.|++.|+|+|..+..               .+.+..++.+|+|.|+|.|.|..|.
T Consensus         8 ~~~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~---------------~~~~~~v~~~d~G~Y~C~A~N~~G~   72 (84)
T d2oz4a3           8 RDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP---------------IGESVTVTRDLEGTYLCRARSTQGE   72 (84)
T ss_dssp             GGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECC---------------TTSCEECCGGGCEEEEEEEEETTEE
T ss_pred             cCCCccEEEeCCCEEEEEEEEeEcCccEEEEEEeecccee---------------eeeeeccccCCCCEEEEEEEcCCCE
Confidence            3344567888999999999999999999999999976531               1223457789999999999999999


Q ss_pred             eEEEEEEEEE
Q psy15127        324 TTVRAFLQVR  333 (633)
Q Consensus       324 ~~~~~~l~v~  333 (633)
                      .+..+.|.|.
T Consensus        73 ~~~~~~l~V~   82 (84)
T d2oz4a3          73 VTREVTVNVL   82 (84)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            9999998886

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.8e-12  Score=103.52  Aligned_cols=89  Identities=24%  Similarity=0.396  Sum_probs=67.6

Q ss_pred             ceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEe
Q psy15127        528 KVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTV  607 (633)
Q Consensus       528 ~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i  607 (633)
                      ..+.......+++++|.|+|++|         ..++.|.+| .|+|+........   ..|...    ....+..++++|
T Consensus        17 ~~v~l~~~~~~s~tsi~v~W~~p---------~~~~~i~gY-~v~y~~~~~~~~~---~~~~~~----~v~~~~~~s~~i   79 (120)
T d1ujta_          17 VLVRLHNPVVLTPTTVQVTWTVD---------RQPQFIQGY-RVMYRQTSGLQAT---SSWQNL----DAKVPTERSAVL   79 (120)
T ss_dssp             CCEEECCCCCCBTTEEEEEEEES---------SCCSSCCEE-EEEEEESSSSSTT---TCCEEE----ECCCTTCCEEEE
T ss_pred             cceeccCCEEeCCCeEEEEecCC---------CCCCcEEEE-EEEeeecccCCCC---cceEEE----EeccCceeEEEE
Confidence            33434466778899999999965         346789999 9999987654321   124322    123456889999


Q ss_pred             eccccceeEEEEEeccccccccccCC
Q psy15127        608 THLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       608 ~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      .||+|++.|.|+|+|+|..|+|++|+
T Consensus        80 ~~L~p~t~Y~f~V~A~n~~G~G~~S~  105 (120)
T d1ujta_          80 VNLKKGVTYEIKVRPYFNEFQGMDSE  105 (120)
T ss_dssp             ESCCSSEEEEEEEEEESSSCCCCCCC
T ss_pred             CCCCCCCEEEEEEEEEeCCcCcCCCC
Confidence            99999999999999999999999986

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=3.9e-12  Score=97.34  Aligned_cols=84  Identities=20%  Similarity=0.326  Sum_probs=68.9

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEE
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV  326 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  326 (633)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++++..+...   ...+.....+++|.|.++..+|+|.|+|.|.|..|....
T Consensus         8 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~---~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~   84 (92)
T d1epfa2           8 PTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILK---KDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEIN   84 (92)
T ss_dssp             CSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGG---CCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEE
T ss_pred             CCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccc---cceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCCEEE
Confidence            34456788999999999999999999999999887532   223455666778999999999999999999998887777


Q ss_pred             EEEEEEE
Q psy15127        327 RAFLQVR  333 (633)
Q Consensus       327 ~~~l~v~  333 (633)
                      ...+.|.
T Consensus        85 ~~~i~Vi   91 (92)
T d1epfa2          85 FKDIQVI   91 (92)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            7666664

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=6e-12  Score=97.58  Aligned_cols=94  Identities=28%  Similarity=0.293  Sum_probs=75.0

Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEE
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAE  489 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~  489 (633)
                      |++|..+.+...+.+++.|+|++|...+  +..+..|.++++..+. ..|.........+.++|.+|+|++.|.|+|+|.
T Consensus         1 P~~P~~~~v~~~~~~si~l~W~~p~~~~--~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~~v~~L~p~t~Y~~rV~A~   77 (96)
T d1x5xa1           1 PSMPASPVLTKAGITWLSLQWSKPSGTP--SDEGISYILEMEEETS-GYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAY   77 (96)
T ss_dssp             CCCCCCCEEEEECSSEEEEECCCCSSCC--SSSSCEEEEEECCSSS-SCCCEEEEEESCSEEEEESCCSSCEEEEEEEEE
T ss_pred             CccCCCCEEEEecCCEEEEEEEeecccC--cceEeeeEEEeeeccc-eeeeEEeecCCCCEEEECCCCCCCEEEEEEEEE
Confidence            4568888899999999999999987653  5678888888876654 344444445567889999999999999999999


Q ss_pred             eccccCCCCCCCCceeec
Q psy15127        490 NSHGLGIPSPVSPITRTL  507 (633)
Q Consensus       490 n~~G~g~~s~~~~~~~t~  507 (633)
                      |..|.|++|... .++|+
T Consensus        78 n~~G~s~~S~~~-~~~T~   94 (96)
T d1x5xa1          78 NSEGKSNPSEVV-EFTTC   94 (96)
T ss_dssp             CSSCEEEECCCE-EEECC
T ss_pred             cCCcEeCCCCCE-EEEeC
Confidence            999999998776 35553

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.8e-12  Score=96.51  Aligned_cols=79  Identities=16%  Similarity=0.144  Sum_probs=64.8

Q ss_pred             ceeEEecCCceEEEEEEEe-eecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeE
Q psy15127        247 ASLLIWNHPRVNRLSCFAE-GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT  325 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~-g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  325 (633)
                      ...+.+..|+++.|.|.+. |.|.+.|.|.+.+..+.       ........+.|.|.+++.+|+|.|+|.|.|..|..+
T Consensus        10 ~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~-------~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~   82 (90)
T d1gsma1          10 EPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLG-------AVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQ   82 (90)
T ss_dssp             CSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTC-------CEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeee-------eeeccCceeeEEcCccChhhCCcEEEEEEeCCCcEE
Confidence            3456778899999999985 78899999998776431       222334456899999999999999999999999999


Q ss_pred             EEEEEEE
Q psy15127        326 VRAFLQV  332 (633)
Q Consensus       326 ~~~~l~v  332 (633)
                      .++.|.|
T Consensus        83 ~s~~l~V   89 (90)
T d1gsma1          83 HTVQLLV   89 (90)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9988876

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1e-11  Score=95.42  Aligned_cols=90  Identities=21%  Similarity=0.232  Sum_probs=72.7

Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEE
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAE  489 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~  489 (633)
                      |.+|..+.+...+.+++.|+|++|...   ++++.+|.|+|+..+. ..|..  .....+.++|.+|.|++.|.|+|+|.
T Consensus         1 P~~P~~~~v~~~s~~si~l~W~~p~~~---~~~i~~Y~v~~~~~~~-~~~~~--~~~~~~~~~i~~L~p~t~Y~~~V~A~   74 (93)
T d1x4xa1           1 PDQCKPPQVTCRSATCAQVNWEVPLSN---GTDVTEYRLEWGGVEG-SMQIC--YCGPGLSYEIKGLSPATTYYCRVQAL   74 (93)
T ss_dssp             CCCCCCCCCEEEETTEEEEECCCCSCS---SSCCCEEEEEEESSTT-SCCEE--EEESCSEEEEESCCSSCEEEEEEEEE
T ss_pred             CcCCCCCEEEEeCCCeEEEEEEecccC---CCeeEEEEEEEccCCC-cceEe--ecCCccEEEEcccceeeEEEEEEEEE
Confidence            356777888889999999999998843   5789999999987653 33332  34457889999999999999999999


Q ss_pred             eccccCCCCCCCCceee
Q psy15127        490 NSHGLGIPSPVSPITRT  506 (633)
Q Consensus       490 n~~G~g~~s~~~~~~~t  506 (633)
                      |..|.|++|... .++|
T Consensus        75 n~~G~s~~S~~~-~~~T   90 (93)
T d1x4xa1          75 SVVGAGPFSEVV-ACVT   90 (93)
T ss_dssp             CSSCCCCBCCCE-EEEC
T ss_pred             ECCcCcCCCCcE-EEEe
Confidence            999999998765 3544

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=2.5e-12  Score=102.57  Aligned_cols=79  Identities=25%  Similarity=0.367  Sum_probs=61.1

Q ss_pred             eEEEcCCeEEEEEEEe-ccCCCeEEEEeCCccCCCCCe-----------EE-cccceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127         81 ATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKMPTGRA-----------KI-LDDRSLQIENVGPQDEGLYICDVENLVG  147 (633)
Q Consensus        81 ~~~~~G~~~~L~C~~~-~~p~p~i~W~~~~~~i~~~~~-----------~~-~~~~~L~i~~v~~~d~G~Y~C~~~n~~g  147 (633)
                      ..+.+|+++.|.|.+. |.|.+.++|+|++..+.....           .. ...+.|.|.+++.+|+|.|+|.|.|..|
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   91 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG   91 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred             CEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCC
Confidence            3688999999999985 799999999999987743211           11 1235799999999999999999999999


Q ss_pred             eEEE--EEEEEEEe
Q psy15127        148 SISL--RASLTVHL  159 (633)
Q Consensus       148 ~~s~--~~~l~V~~  159 (633)
                      ....  .+.|.|..
T Consensus        92 ~~~~s~~v~l~V~~  105 (110)
T d1f97a2          92 TAMRSEAAHMDAVE  105 (110)
T ss_dssp             CCEECCCEEEEEES
T ss_pred             cEEEEEEEEEEEEe
Confidence            7544  55566554

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.8e-12  Score=104.99  Aligned_cols=101  Identities=19%  Similarity=0.233  Sum_probs=76.4

Q ss_pred             CCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEe
Q psy15127        411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAEN  490 (633)
Q Consensus       411 ~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n  490 (633)
                      .+|..+.+...+.+++.|+|++|..... ++.+.+|.|+|+..+................+.|.+|.|++.|.|+|+|.|
T Consensus        13 ~~P~~v~~~~~~~~si~v~W~~p~~~~~-ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n   91 (119)
T d1x5ha1          13 AAPQNLSLEVRNSKSIMIHWQPPAPATQ-NGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALT   91 (119)
T ss_dssp             CCCEEEEEECCSSSEEEEEEECCCTTTC-CSCEEEEBCEEEETTEEEEEECCBCCTTCCEEEEECCCSSCEEEEECEEEE
T ss_pred             CCCcCeEEEEecCcEEEEEEEcccccCC-CCCEEEEEEEEeecccccceeeeecCCCccEEEeCCCCCCCEEEEEEEEEc
Confidence            4677778888889999999999865433 468999999998765322222111223457899999999999999999999


Q ss_pred             ccccCCCCCCCCceeecCCCCCC
Q psy15127        491 SHGLGIPSPVSPITRTLGLNSLV  513 (633)
Q Consensus       491 ~~G~g~~s~~~~~~~t~~~~p~~  513 (633)
                      ..|.|++|... .++|.+..+..
T Consensus        92 ~~G~G~~S~~~-~~~T~~~~~~~  113 (119)
T d1x5ha1          92 INGTGPATDWL-SAETFESDLDE  113 (119)
T ss_dssp             TTEEEEECCCE-EEECCSSCCCC
T ss_pred             CCcCCCCCCCE-EEEeCCCCCCC
Confidence            99999998776 57776655433

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.5e-12  Score=101.46  Aligned_cols=81  Identities=15%  Similarity=0.173  Sum_probs=62.1

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++...+.++|.|+|++|        ...++.+.+| .|.|+......      .|....    ...+..++++|.+|+++
T Consensus        14 ~~~~~~~~~v~l~W~pp--------~~~~~~~~~y-~i~y~~~~~~~------~~~~~~----~~~~~~~~~~i~~L~p~   74 (105)
T d2d9qb2          14 EAAPPQAGCLQLSWEPW--------QPGLHINQKC-ELRHKPQRGEA------SWALVG----PLPLEALQYELCGLLPA   74 (105)
T ss_dssp             -----CCSCEEEEEECC--------GGGTTSCEEE-EEEEEESSSCC------CCEEEE----EECSCEEEEEECSCCSC
T ss_pred             EeecCCCCeEEEEEcCC--------CCCCceeEEE-EEEEEecCCcc------ceeeee----cccCCcceeEEecccCC
Confidence            56667899999999965        4567889999 99999876543      354322    13456788999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|.|..|.|.+||
T Consensus        75 t~Y~frVra~n~~g~G~~S~   94 (105)
T d2d9qb2          75 TAYTLQIRCIRWPLPGHWSD   94 (105)
T ss_dssp             CCEEEEEEEEECSSCCCCCC
T ss_pred             eEEEEEEEEEeCCCCCCCcC
Confidence            99999999999999999886

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=2.1e-12  Score=99.07  Aligned_cols=76  Identities=13%  Similarity=0.111  Sum_probs=60.7

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++...+.++|.|+|.+|      +. ..++.+.+| .+.|...+...        .     ..   ...++++|.||+|+
T Consensus        10 ~~~~~~~~si~vsW~~p------~~-~~~~~~i~Y-~i~~~~~~~~~--------~-----~~---~~~t~~~i~~L~p~   65 (94)
T d1x5aa1          10 KLVKKEPRQLELTWAGS------RP-RNPGGNLSY-ELHVLNQDEEW--------H-----QM---VLEPRVLLTKLQPD   65 (94)
T ss_dssp             CEEEEETTEEEEECCCC------CS-SCCSSCCEE-EEEEECSSCEE--------E-----EE---ESSSEEEEESCCSS
T ss_pred             EEEEcCCCEEEEEEecc------cC-CCCCcEEEE-EEEEecCCceE--------E-----Ee---eccCEEEECCCCCC
Confidence            88899999999999943      22 346677789 99998665422        1     11   13688999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|+|..|+|++|+
T Consensus        66 t~Y~~rV~A~n~~G~g~~S~   85 (94)
T d1x5aa1          66 TTYIVRVRTLTPLGPGPFSP   85 (94)
T ss_dssp             CEEEEEEEEECSSSCCCCCC
T ss_pred             CEEEEEEEEEcCCcCcCCCC
Confidence            99999999999999999985

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=8.8e-12  Score=96.38  Aligned_cols=93  Identities=23%  Similarity=0.347  Sum_probs=74.7

Q ss_pred             CCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEe
Q psy15127        411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAEN  490 (633)
Q Consensus       411 ~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n  490 (633)
                      ++|..+.....+.+++.|+|.+|...   ++.+.+|.++|+..+....+. .........++|.+|.|++.|.|+|+|.|
T Consensus         2 ~~~~~l~~~~~t~~si~l~W~~p~~~---~g~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n   77 (95)
T d2djsa1           2 STVPIMHQVSATMRSITLSWPQPEQP---NGIILDYEIRYYEKEHNEFNS-SMARSQTNTARIDGLRPGMVYVVQVRART   77 (95)
T ss_dssp             CCCSCCEEEEECSSEEEEECCCCSCC---SSCEEEEEEEEEETTSCSTTC-EEEEESSSEEEEESCCTTCEEEEEEEEEE
T ss_pred             CCCCccEEEeecCCEEEEEEEECCCC---CcceEEeeeeeeeeccCccee-EeecCCccEEEEeecCCccEEEEEEEEEc
Confidence            45667888999999999999998754   578999999999876443322 22344568899999999999999999999


Q ss_pred             ccccCCCCCCCCceeecC
Q psy15127        491 SHGLGIPSPVSPITRTLG  508 (633)
Q Consensus       491 ~~G~g~~s~~~~~~~t~~  508 (633)
                      ..|.|++|... .++|+.
T Consensus        78 ~~G~g~~S~~~-~~~T~~   94 (95)
T d2djsa1          78 VAGYGKFSGKM-CFQTLT   94 (95)
T ss_dssp             SSCEEEECCCE-EEECCC
T ss_pred             CCCCCCCCCCE-EEEeCC
Confidence            99999998776 366643

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=7.1e-13  Score=104.64  Aligned_cols=88  Identities=19%  Similarity=0.324  Sum_probs=67.4

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEE-eccCCCeEEEEeCCccCCCCCeE-----------EcccceEEEccCCCCCCeEE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAK-----------ILDDRSLQIENVGPQDEGLY  138 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~-~~~p~p~i~W~~~~~~i~~~~~~-----------~~~~~~L~i~~v~~~d~G~Y  138 (633)
                      ||.+........+.+|+.++|.|.+ .|.|.|.+.|+|++..+......           ....+.|.|.+++.+|+|.|
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y   81 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY   81 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCE
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEE
Confidence            5655555556678999999999998 47999999999999887432111           11235799999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEE
Q psy15127        139 ICDVENLVGSISLRASLTVH  158 (633)
Q Consensus       139 ~C~~~n~~g~~s~~~~l~V~  158 (633)
                      +|.|.|..|....++.|.|.
T Consensus        82 ~C~a~N~~G~~~~s~~v~v~  101 (104)
T d1nbqa2          82 SCEARNGYGTPMTSNAVRME  101 (104)
T ss_dssp             EEEEECSSSCCEECCCBCCE
T ss_pred             EEEEEECCCceEEEEEEEEE
Confidence            99999999987655544443

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.7e-12  Score=99.20  Aligned_cols=96  Identities=25%  Similarity=0.365  Sum_probs=77.3

Q ss_pred             CCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEE
Q psy15127        408 LFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVR  487 (633)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~  487 (633)
                      -.|++|..+.+...+.+++.|+|.+|....  ++.+.+|.|.|+..+....+...........++|.+|.|++.|.|+|+
T Consensus         9 ~~P~~P~~l~~~~~~~~sv~lsW~~P~~~~--~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~rV~   86 (107)
T d1x5fa1           9 PLPSAPRDVVASLVSTRFIKLTWRTPASDP--HGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVM   86 (107)
T ss_dssp             CCCCCCEEEEEEEECSSCEEEEEECCSSCS--SCCSSEEEEEEEETTCCCCEEEECSSTTCSEEEECSCCTTCEEEEEEE
T ss_pred             CCCcCCCccEEEEecCCEEEEEEECCccCC--CCceEEEEEEEEeCCCCceEEEEEeCCCccEEEecCCCCCCEEEEEEE
Confidence            356778888888999999999999986543  578999999999876555444333444567899999999999999999


Q ss_pred             EEeccccCCCCCCCCceee
Q psy15127        488 AENSHGLGIPSPVSPITRT  506 (633)
Q Consensus       488 a~n~~G~g~~s~~~~~~~t  506 (633)
                      |.|..|.|++|... .+.|
T Consensus        87 A~n~~G~g~~S~~i-~v~T  104 (107)
T d1x5fa1          87 AQNKHGSGESSAPL-RVET  104 (107)
T ss_dssp             EECSSCEEEECCCE-EEEC
T ss_pred             EEeCCCCcCCCCCE-EEEC
Confidence            99999999988766 4555

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=8.6e-12  Score=96.32  Aligned_cols=92  Identities=29%  Similarity=0.406  Sum_probs=69.6

Q ss_pred             CCCCCCcEEE-EeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEE
Q psy15127        410 PGPPAAPVIL-NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRA  488 (633)
Q Consensus       410 p~~p~~~~~~-~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a  488 (633)
                      |+++..+.+. ....+++.|+|.+|...+  +.+|..|.|+++..+. ..|... .......++|.+|.|++.|.|+|+|
T Consensus         2 P~p~~pp~~~~~~~~~sv~l~W~~P~~~g--g~~i~~Y~v~~~~~~~-~~~~~~-~~~~~~~~~v~~L~p~t~Y~frV~A   77 (97)
T d2crza1           2 PGPCLPPRLQGRPKAKEIQLRWGPPLVDG--GSPISCYSVEMSPIEK-DEPREV-YQGSEVECTVSSLLPGKTYSFRLRA   77 (97)
T ss_dssp             CCCCCCCEECSCCCSSEEEEECCCCSCCT--TSCCCEEEEEEECTTS-CCCEEE-EEESCSEEEEESCCTTCEEEECCEE
T ss_pred             cCcCCCCEEeeeeeCCEEEEEEeCCCcCC--CCceeEEEEEEEcCcC-CceeEe-ecCCceEEEEcCCCCCEEEEEEEEE
Confidence            3444555544 345689999999987653  5689999999987654 445443 3445678999999999999999999


Q ss_pred             EeccccCCCCCCCCceee
Q psy15127        489 ENSHGLGIPSPVSPITRT  506 (633)
Q Consensus       489 ~n~~G~g~~s~~~~~~~t  506 (633)
                      .|..|.|++|... .+.|
T Consensus        78 ~N~~G~s~~S~~~-~~~T   94 (97)
T d2crza1          78 ANKMGFGPFSEKC-DITT   94 (97)
T ss_dssp             ECSSCBCCCCCCE-EEEC
T ss_pred             ecCCeEcCCcCCC-eEEe
Confidence            9999999998776 3444

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.3e-12  Score=100.03  Aligned_cols=83  Identities=23%  Similarity=0.408  Sum_probs=64.8

Q ss_pred             eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEcc---CceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ---EGTLRIQGVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                      ..+.+.+|+.+.|.|.+.|.|.|.+.|+|+|..+...   ....+....   ...|.|.+++.+|+|.|+|.|.|..|..
T Consensus         4 ~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~---~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   80 (91)
T d1rhfa1           4 VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNL---DQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETE   80 (91)
T ss_dssp             EEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSS---EEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCE
T ss_pred             eeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccc---eeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCE
Confidence            4567788999999999999999999999999887421   111222222   2369999999999999999999999975


Q ss_pred             -EEEEEEEEE
Q psy15127        325 -TVRAFLQVR  333 (633)
Q Consensus       325 -~~~~~l~v~  333 (633)
                       +..+.|.|.
T Consensus        81 ~S~~~~l~V~   90 (91)
T d1rhfa1          81 ISQPVWLTVE   90 (91)
T ss_dssp             ECCCEEEEEE
T ss_pred             EEEEEEEEEE
Confidence             556777774

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=4.6e-12  Score=100.35  Aligned_cols=86  Identities=17%  Similarity=0.297  Sum_probs=68.0

Q ss_pred             CCeeeeCCCc-eEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCC--eEE----cc----------cceEEEccCCCC
Q psy15127         71 KPFPISEPSD-ATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR--AKI----LD----------DRSLQIENVGPQ  133 (633)
Q Consensus        71 ~p~~~~~~~~-~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~--~~~----~~----------~~~L~i~~v~~~  133 (633)
                      +|.|+..+.. +.+..|+.+.|.|.+.+.|.|.|.|+++|..+....  ...    ..          ...|+|.+++.+
T Consensus         1 kP~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   80 (107)
T d1iray3           1 RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR   80 (107)
T ss_dssp             CCEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGG
T ss_pred             CCCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchH
Confidence            4777765544 557789999999999999999999999998875321  100    00          147999999999


Q ss_pred             CCe-EEEEEEEeCCceEEEEEEEE
Q psy15127        134 DEG-LYICDVENLVGSISLRASLT  156 (633)
Q Consensus       134 d~G-~Y~C~~~n~~g~~s~~~~l~  156 (633)
                      |.| .|+|.|.|..|..++.+.|.
T Consensus        81 D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          81 FYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             HCCcEEEEEEEeCCCeEEEEEEEE
Confidence            999 59999999999988877765

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.9e-12  Score=100.50  Aligned_cols=80  Identities=16%  Similarity=0.216  Sum_probs=60.9

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.++|.|+|++|       ....+..+.+| +++|+......       |.     .+......++++|.+|+++
T Consensus         8 ~v~~~~~~si~l~W~~p-------~~~~~~~~~~y-~~~~~~~~~~~-------~~-----~~~~~~~~~~~~v~~L~p~   67 (96)
T d1x5xa1           8 VLTKAGITWLSLQWSKP-------SGTPSDEGISY-ILEMEEETSGY-------GF-----KPKYDGEDLAYTVKNLRRS   67 (96)
T ss_dssp             EEEEECSSEEEEECCCC-------SSCCSSSSCEE-EEEECCSSSSC-------CC-----EEEEEESCSEEEEESCCSS
T ss_pred             EEEEecCCEEEEEEEee-------cccCcceEeee-EEEeeecccee-------ee-----EEeecCCCCEEEECCCCCC
Confidence            67788999999999955       12334567777 77777655443       32     2223345789999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|.|..|.|++|+
T Consensus        68 t~Y~~rV~A~n~~G~s~~S~   87 (96)
T d1x5xa1          68 TKYKFKVIAYNSEGKSNPSE   87 (96)
T ss_dssp             CEEEEEEEEECSSCEEEECC
T ss_pred             CEEEEEEEEEcCCcEeCCCC
Confidence            99999999999999999985

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.9e-12  Score=100.12  Aligned_cols=76  Identities=16%  Similarity=0.148  Sum_probs=59.9

Q ss_pred             ecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeE
Q psy15127        537 PTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKY  616 (633)
Q Consensus       537 ~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y  616 (633)
                      ..+.++|.|+|++|       ..+++..|++| .|+|+..+...       |...      ..+..++++|.+|++++.|
T Consensus        13 ~~~~~sv~l~W~~P-------~~~gg~~i~~Y-~v~~~~~~~~~-------~~~~------~~~~~~~~~v~~L~p~t~Y   71 (97)
T d2crza1          13 RPKAKEIQLRWGPP-------LVDGGSPISCY-SVEMSPIEKDE-------PREV------YQGSEVECTVSSLLPGKTY   71 (97)
T ss_dssp             CCCSSEEEEECCCC-------SCCTTSCCCEE-EEEEECTTSCC-------CEEE------EEESCSEEEEESCCTTCEE
T ss_pred             eeeCCEEEEEEeCC-------CcCCCCceeEE-EEEEEcCcCCc-------eeEe------ecCCceEEEEcCCCCCEEE
Confidence            34678999999955       12344579999 99998776654       5422      2245788999999999999


Q ss_pred             EEEEeccccccccccCC
Q psy15127        617 EFFLVPFFKTVEGARLD  633 (633)
Q Consensus       617 ~~~v~a~n~~g~g~~s~  633 (633)
                      .|+|+|.|..|.|++|+
T Consensus        72 ~frV~A~N~~G~s~~S~   88 (97)
T d2crza1          72 SFRLRAANKMGFGPFSE   88 (97)
T ss_dssp             EECCEEECSSCBCCCCC
T ss_pred             EEEEEEecCCeEcCCcC
Confidence            99999999999999986

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=4.6e-12  Score=99.95  Aligned_cols=81  Identities=7%  Similarity=0.156  Sum_probs=62.6

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      .+.....++|.|+|++|        ...++.+++| .|+|+......      .|+....    .....++++|.+|.++
T Consensus        15 ~~~~~~~~~i~v~W~pp--------~~~~~~~~~Y-~i~y~~~~~~~------~w~~v~~----~~~~~~~~~l~~L~p~   75 (106)
T d1cd9b2          15 DVVSHQPGCLWLSWKPW--------KPSEYMEQEC-ELRYQPQLKGA------NWTLVFH----LPSSKDQFELCGLHQA   75 (106)
T ss_dssp             -----CCSCEEEEEECC--------GGGTTSCEEE-EEEEEESSTTC------CCEEEEE----EESCEEEEEECCCCSC
T ss_pred             eEecCCCCEEEEEEcCc--------ccCCccceEE-EEEEeeccccc------cceeeec----ccCCceEEEEeccCCC
Confidence            45566789999999965        5668889999 99999765543      3765432    2245788999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|.|..|+|.+||
T Consensus        76 t~Y~frVra~~~~g~g~wS~   95 (106)
T d1cd9b2          76 PVYTLQMRCIRSSLPGFWSP   95 (106)
T ss_dssp             SCEEEEEEEEESSSCCCCCC
T ss_pred             eEEEEEEEEEeCCCCCCCcC
Confidence            99999999999999999886

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=2.3e-11  Score=93.12  Aligned_cols=90  Identities=22%  Similarity=0.382  Sum_probs=72.8

Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEE
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAE  489 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~  489 (633)
                      |.+|..+++...+.++|.|+|.++....  ++.+..|.|.+...+.  .+.   .....+.++|.+|.|++.|.|+|+|.
T Consensus         3 p~~p~~L~~~~~~~~si~vsW~~p~~~~--~~~~i~Y~i~~~~~~~--~~~---~~~~~t~~~i~~L~p~t~Y~~rV~A~   75 (94)
T d1x5aa1           3 SLSGLSLKLVKKEPRQLELTWAGSRPRN--PGGNLSYELHVLNQDE--EWH---QMVLEPRVLLTKLQPDTTYIVRVRTL   75 (94)
T ss_dssp             CCCSCCCCEEEEETTEEEEECCCCCSSC--CSSCCEEEEEEECSSC--EEE---EEESSSEEEEESCCSSCEEEEEEEEE
T ss_pred             CCCCCceEEEEcCCCEEEEEEecccCCC--CCcEEEEEEEEecCCc--eEE---EeeccCEEEECCCCCCCEEEEEEEEE
Confidence            5678899999999999999999987554  4567789999987642  222   22346789999999999999999999


Q ss_pred             eccccCCCCCCCCceeec
Q psy15127        490 NSHGLGIPSPVSPITRTL  507 (633)
Q Consensus       490 n~~G~g~~s~~~~~~~t~  507 (633)
                      |..|.|++|... .++|.
T Consensus        76 n~~G~g~~S~~~-~~~T~   92 (94)
T d1x5aa1          76 TPLGPGPFSPDH-EFRTS   92 (94)
T ss_dssp             CSSSCCCCCCCE-EEECC
T ss_pred             cCCcCcCCCCCE-EEEeC
Confidence            999999998765 35553

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=1.8e-12  Score=105.68  Aligned_cols=90  Identities=8%  Similarity=-0.034  Sum_probs=63.7

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeecc----ceeEeecCCccceEEeec
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKY----NMATVMNAATTTSYTVTH  609 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~----~~~~~~~~~~~~~~~i~~  609 (633)
                      .+.. +.++|.|+|++|        .+.+|.|++| .|+|+.............|...    ......+.+....++|.+
T Consensus        15 ~v~~-~~~si~l~W~~P--------~~~~g~i~~Y-~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   84 (123)
T d1wfta_          15 RISK-NVDGIHLSWEPP--------TSPSGNILEY-SAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLANAHID   84 (123)
T ss_dssp             EEEE-CSSEEEEEEECC--------SSCCSSCCCE-EEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHHHHTTCCCB
T ss_pred             EEEe-CCCEEEEEecCc--------hhcCCceEEE-EEEEEECCCCCccccceeeeEEEecCCceeEeecCCccEEEEcC
Confidence            5554 678999999966        5678899999 9999887665421111011000    001122334567889999


Q ss_pred             cccceeEEEEEeccccccccccCC
Q psy15127        610 LRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       610 L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      |++++.|.|+|+|.|.+|.|++|+
T Consensus        85 L~p~t~Y~frV~A~N~~G~Gp~S~  108 (123)
T d1wfta_          85 YTSRPAIVFRISAKNEKGYGPATQ  108 (123)
T ss_dssp             CSSSCEEEEEEEEBSSSSBCCCEE
T ss_pred             CCCCCEEEEEEEEecCCcCCCCCC
Confidence            999999999999999999999874

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=6.8e-12  Score=100.26  Aligned_cols=97  Identities=31%  Similarity=0.398  Sum_probs=75.3

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCC--CeEEEE---EeeeeceEEEecCCCCCeEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQT--GWVVAA---HRITSTSITVSDLKPDTSYM  483 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~--~~~~~~---~~~~~~~~~i~~L~p~~~Y~  483 (633)
                      .|++|..+.+...+.+++.|+|+++.+   +++++..|.++|+......  .|....   .......+.|.+|.|++.|.
T Consensus        10 ~P~~P~~~~~~~~~~~sv~l~W~pp~~---~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~   86 (111)
T d1wisa1          10 LPGPPTNLGISNIGPRSVTLQFRPGYD---GKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYS   86 (111)
T ss_dssp             CCCCCEEEEEESCCSSCEEEEEECCCC---CSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTTSEEC
T ss_pred             CCcCCCCCEEEEcCCCEEEEEEeCCCC---CCCceeEEEEeeeecccCCCcceeeeeeeecccceeEEEeCCCCCCCEEE
Confidence            467788888888889999999998873   4689999999998654322  222221   22235789999999999999


Q ss_pred             EEEEEEeccccCCCCCCCCceeecC
Q psy15127        484 FIVRAENSHGLGIPSPVSPITRTLG  508 (633)
Q Consensus       484 ~~v~a~n~~G~g~~s~~~~~~~t~~  508 (633)
                      |+|+|.|..|.|++|..+..++|++
T Consensus        87 frV~A~N~~G~s~~S~~s~~~~Tlq  111 (111)
T d1wisa1          87 FRMRQVNIVGTSPPSQPSRKIQTLQ  111 (111)
T ss_dssp             CCCEEECSSCBCCCCCCCCCEECCC
T ss_pred             EEEEEEcCCcCCCCcCCCCCEEccC
Confidence            9999999999999998776677753

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4.7e-11  Score=94.37  Aligned_cols=90  Identities=21%  Similarity=0.306  Sum_probs=72.8

Q ss_pred             CCCCCCCcEEE-EeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEE
Q psy15127        409 FPGPPAAPVIL-NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVR  487 (633)
Q Consensus       409 ~p~~p~~~~~~-~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~  487 (633)
                      .|++|..+... ....+++.|+|.+|...+  +.++..|.++++..+....|... .....+.+.|.+|.|++.|.|+|+
T Consensus        10 ~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~--g~~~~~y~v~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~rV~   86 (107)
T d2crma1          10 KPGIPVKPSVKGKIHSHSFKITWDPPKDNG--GATINKYVVEMAEGSNGNKWEMI-YSGATREHLCDRLNPGCFYRLRVY   86 (107)
T ss_dssp             CCCCCCCCEEEEEEETTEEEEECCCCTTCC--SSCCCEEEEEEEESSSSCCCEEE-ECSSCSEEEECSCCTTSCEEEEEE
T ss_pred             CCcCCCCCEEEeeecCCEEEEEEEECccCC--cceEEEEEEEEEeecCCCcEEEe-ecCCccEEEEeccCCCCEEEEEEE
Confidence            46777776544 568899999999987653  56899999999887665555533 444678899999999999999999


Q ss_pred             EEeccccCCCCCCC
Q psy15127        488 AENSHGLGIPSPVS  501 (633)
Q Consensus       488 a~n~~G~g~~s~~~  501 (633)
                      |.|..|.|++|...
T Consensus        87 A~n~~G~s~~S~~v  100 (107)
T d2crma1          87 CISDGGQSAVSESL  100 (107)
T ss_dssp             EEETTEECCCCCCC
T ss_pred             EECCCcCcCCCCcE
Confidence            99999999998776

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4e-12  Score=100.18  Aligned_cols=90  Identities=37%  Similarity=0.445  Sum_probs=71.8

Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEE
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAE  489 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~  489 (633)
                      |.+|..+.+..++.+++.|+|++|...+  +.++..|.++++..+....+...........+++.+|.|++.|.|+|+|.
T Consensus         3 p~pP~~p~~~~~t~~sv~lsW~~P~~~~--g~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~   80 (104)
T d1bpva_           3 IDPPGKPVPLNITRHTVTLKWAKPEYTG--GFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAK   80 (104)
T ss_dssp             CCCCCCCEEEEEETTEEEEECCCCSCCT--TCCCSCCEEEEEETTSCCCEECCCSCCCSSEEEECSCCSSCCEEEEEEEE
T ss_pred             CCCCCCCEEEEecCCEEEEEEEeccccC--cceEEEEEEEeecccccceeEEEeeccceeEEEEcCCCCCCEEEEEEEEE
Confidence            5678889999999999999999987653  57899999999987654444333333456789999999999999999999


Q ss_pred             ecccc-CCCCCCC
Q psy15127        490 NSHGL-GIPSPVS  501 (633)
Q Consensus       490 n~~G~-g~~s~~~  501 (633)
                      |..|. |++|...
T Consensus        81 n~~G~~s~~S~~s   93 (104)
T d1bpva_          81 NAAGAISPPSEPS   93 (104)
T ss_dssp             CTTSCEEEEEEEE
T ss_pred             ECCCCCCCCcCCC
Confidence            99997 6655443

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.3e-11  Score=94.98  Aligned_cols=93  Identities=26%  Similarity=0.416  Sum_probs=69.6

Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEee----eeceEEEecCCCCCeEEEE
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI----TSTSITVSDLKPDTSYMFI  485 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~----~~~~~~i~~L~p~~~Y~~~  485 (633)
                      |++|... ......+++.|+|.+|...+  +.+|.+|.|+|+..+.. .|.......    ....++|.+|.|++.|.|+
T Consensus         3 P~~P~~~-~~~~~~~sv~l~W~~P~~~g--g~~I~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~fr   78 (101)
T d2haza1           3 PSSPSID-QVEPYSSTAQVQFDEPEATG--GVPILKYKAEWRAVGEE-VWHSKWYDAKEASMEGIVTIVGLKPETTYAVR   78 (101)
T ss_dssp             CCCCEEE-EEEECSSCEEEEEECCSCCT--TSCCCEEEEEEEETTCC-CCEEEEEEHHHHHHHSEEEECSCCTTCEEEEE
T ss_pred             CcCCccC-EEEeeCCEEEEEEeCCCcCc--cccEEEEEEEEeecCCc-ceeeeeeeeecccceeEEEecCCCCCeEEEEE
Confidence            4556433 34567789999999987653  56899999999987643 344332222    2467999999999999999


Q ss_pred             EEEEeccccCCCCCCCCceeec
Q psy15127        486 VRAENSHGLGIPSPVSPITRTL  507 (633)
Q Consensus       486 v~a~n~~G~g~~s~~~~~~~t~  507 (633)
                      |+|.|..|.|++|... .+.|+
T Consensus        79 V~A~N~~G~g~~S~~~-~~~T~   99 (101)
T d2haza1          79 LAALNGKGLGEISAAS-EFKTQ   99 (101)
T ss_dssp             EEEEETTEECCCCCCE-EEECC
T ss_pred             EEEEeCCcCcCCCCce-eEEeC
Confidence            9999999999998776 35553

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.9e-11  Score=99.08  Aligned_cols=106  Identities=23%  Similarity=0.303  Sum_probs=84.8

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCC-CeEEEEEeeeeceEEEecCCCCCeEEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQT-GWVVAAHRITSTSITVSDLKPDTSYMFIVR  487 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~  487 (633)
                      .|++|..+.+...+.+++.|+|+++...   ++.+..|.++|+..+... .|...........+.+.+|.|++.|.|+|+
T Consensus        16 ~P~~P~~~~v~~~~~~sv~l~W~~p~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~   92 (127)
T d1ueya_          16 VPNPPFDLELTDQLDKSVQLSWTPGDDN---NSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVM   92 (127)
T ss_dssp             SCCCCEEEEEECCSSSCEEEEEECCCCC---SSCEEEEEEEEEBTTTCTTCEEEEEEEESSCCEEEECCCTTCEECCEEE
T ss_pred             cCcCCCCcEEEEecCCeEEEEEeCCccc---ccceEeeeeeeccccccceeEEEEeecCCceEEEECCCccCCEEEEEEE
Confidence            3667878888888999999999988743   578999999998765433 344444444567899999999999999999


Q ss_pred             EEeccccCCCCCCCCceeecCCCCCCCcch
Q psy15127        488 AENSHGLGIPSPVSPITRTLGLNSLVPQHL  517 (633)
Q Consensus       488 a~n~~G~g~~s~~~~~~~t~~~~p~~~~~~  517 (633)
                      |.|..|.|.+|..+..++|.+..|..+|..
T Consensus        93 A~n~~G~s~~S~~s~~~~t~~~~P~~~P~~  122 (127)
T d1ueya_          93 AVNSIGKSLPSEASEQYLTKASEPDKNPTS  122 (127)
T ss_dssp             EEESSCBCCCCSCCCCEECCCSSCSSCSSC
T ss_pred             EEcCCcCcCCcCCcccEEcCCCCCCCCCCC
Confidence            999999999988776678888877766643

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.25  E-value=1.5e-11  Score=94.97  Aligned_cols=86  Identities=19%  Similarity=0.202  Sum_probs=69.9

Q ss_pred             CCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEE-eeeeceEEEecCCCCCeEEEEEEEE
Q psy15127        411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAH-RITSTSITVSDLKPDTSYMFIVRAE  489 (633)
Q Consensus       411 ~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~~~Y~~~v~a~  489 (633)
                      .+|..+.+...+.+++.|+|++|....  ++.+.+|.|+|+..+....|..... ....+.+.|.+|.|++.|.|+|+|.
T Consensus         8 ~~P~~~~v~~~s~tsv~l~W~~P~~~~--~~~i~gY~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~   85 (95)
T d2ibga1           8 PVPELLEIEEYSETAVVLHWSLASDAD--EHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSF   85 (95)
T ss_dssp             CCCEECCCBCCSSSCEEEEEECCTTCC--GGGCCEEEEEEEETTCCSCCEEEEEECTTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCcCeEEEEeCCCEEEEEEEeeeecc--CCcccccceeEeeeeecceeeeeeccCCceeEEEEeeccCCeEEEEEEEEE
Confidence            356667777888999999999876553  5789999999998766566654433 3346789999999999999999999


Q ss_pred             eccccCCCC
Q psy15127        490 NSHGLGIPS  498 (633)
Q Consensus       490 n~~G~g~~s  498 (633)
                      |..|.|++|
T Consensus        86 n~~G~s~~S   94 (95)
T d2ibga1          86 SAASASEFS   94 (95)
T ss_dssp             CSSCBCCCC
T ss_pred             eCCccCCCC
Confidence            999999886

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.2e-11  Score=95.81  Aligned_cols=93  Identities=31%  Similarity=0.413  Sum_probs=74.3

Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEE
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAE  489 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~  489 (633)
                      |++|..+.....+.+++.|+|.+|...   ++.+.+|.|+|+..+... +...........++|.+|.|++.|.|+|+|.
T Consensus         4 P~~p~~~~~~~~s~~si~v~W~~P~~~---~g~i~~Y~v~y~~~~~~~-~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   79 (98)
T d1x5la1           4 PSQVVVIRQERAGQTSVSLLWQEPEQP---NGIILEYEIKYYEKDKEM-QSYSTLKAVTTRATVSGLKPGTRYVFQVRAR   79 (98)
T ss_dssp             CCCCCCEECSCBCSSCEEEEECCCSCC---CSCCCEEEEEEEESSSCC-SSCEEEEESSSEEEECSCCTTCEEEECEEEE
T ss_pred             CCCCCceEEEeccCCEEEEEEECCCCC---CCCEEEEEEEeecccccc-eeeEEecCCceEEEECCCCCCCEEEEEEEEE
Confidence            566778888889999999999998754   578999999999765432 2222334456889999999999999999999


Q ss_pred             eccccCCCCCCCCceeec
Q psy15127        490 NSHGLGIPSPVSPITRTL  507 (633)
Q Consensus       490 n~~G~g~~s~~~~~~~t~  507 (633)
                      |..|.|++|... .++|.
T Consensus        80 n~~G~g~~S~~v-~~~T~   96 (98)
T d1x5la1          80 TSAGCGRFSQAM-EVETG   96 (98)
T ss_dssp             ETTEECCCCCCE-EEECC
T ss_pred             cCCCCcCCCCCE-EEEcC
Confidence            999999998776 45553

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=8.1e-12  Score=99.93  Aligned_cols=76  Identities=21%  Similarity=0.276  Sum_probs=61.2

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++.. ..++|.|.|++|        ...+|.|++| .|+|+..+...       |      .+......+.++|.+|+++
T Consensus        28 ~~~~-~~~si~v~W~~p--------~~~~g~i~~Y-~i~~~~~~~~~-------~------~~~~~~~~~~~~i~~L~p~   84 (113)
T d1x5ia1          28 HVRP-LVTSIVVSWTPP--------ENQNIVVRGY-AIGYGIGSPHA-------Q------TIKVDYKQRYYTIENLDPS   84 (113)
T ss_dssp             EEEE-ETTEEEEEEECC--------SCTTBCCCEE-EEEECSSCGGG-------E------EEECCTTCCEEEECSCCSS
T ss_pred             eeee-CCCEEEEEEEcc--------ccCCccEEEE-EEEeeeccccc-------e------eeeeeCCccEEEEeccccC
Confidence            4544 457999999965        5668899999 99997655432       2      3335567899999999999


Q ss_pred             eeEEEEEeccccccccccC
Q psy15127        614 TKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s  632 (633)
                      +.|.|+|+|.|..|.|+++
T Consensus        85 t~Y~~~V~A~n~~G~g~~~  103 (113)
T d1x5ia1          85 SHYVITLKAFNNVGEGIPL  103 (113)
T ss_dssp             CEECCEEEEECSSCBCCCC
T ss_pred             cEEEEEEEEECCCcCCCCe
Confidence            9999999999999999875

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=7.6e-12  Score=96.01  Aligned_cols=76  Identities=16%  Similarity=0.189  Sum_probs=62.3

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..+++++|.|+|++|           ++.+.+| .|+|+......       +.     ........+.++|.+|+|+
T Consensus         9 ~~~~~s~~si~l~W~~p-----------~~~~~~Y-~i~y~~~~~~~-------~~-----~~~~~~~~~~~~i~~L~p~   64 (92)
T d1qg3a1           9 NAKAAGSRKIHFNWLPP-----------SGKPMGY-RVKYWIQGDSE-------SE-----AHLLDSKVPSVELTNLYPY   64 (92)
T ss_dssp             EEEECSTTCEEEEEECC-----------SSCCCEE-EEEEEETTSCG-------GG-----CEEEEESSSEEEECSCCTT
T ss_pred             EEEEccCCEEEEEEEec-----------CCCccce-EEeeeeccccc-------cE-----EEEecCCccEEEECCCCCC
Confidence            78889999999999943           3678999 99998876654       11     1112345789999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|.|..|.|++|+
T Consensus        65 t~Y~~~V~A~n~~G~g~~S~   84 (92)
T d1qg3a1          65 CDYEMKVCAYGAQGEGPYSS   84 (92)
T ss_dssp             CEEEEEEEEECSSCBCCCCC
T ss_pred             cEEEEEEEEEeCCcCcCCCC
Confidence            99999999999999999985

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.24  E-value=6.6e-12  Score=94.25  Aligned_cols=81  Identities=26%  Similarity=0.310  Sum_probs=66.6

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCC-eEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p-~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      .+|.+...|....+.+|+.++|.|.+.+.|.+ .+.|++||..+...      ++.|.|.+++.+|+|.|+|.+.|..+ 
T Consensus         3 pkp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~------~~~l~i~~v~~~dsG~Y~C~a~ns~~-   75 (85)
T d2fcba1           3 PKAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH------TQPSYRFKANNNDSGEYTCQTGQTSL-   75 (85)
T ss_dssp             CBCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTC------CSSEEEEECCGGGCEEEEEECTTSBC-
T ss_pred             CCCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccc------ccceEEeeccccCCcEEEEECCCCcc-
Confidence            46788899999999999999999999888766 58999999887543      35899999999999999999987643 


Q ss_pred             EEEEEEEEEE
Q psy15127        149 ISLRASLTVH  158 (633)
Q Consensus       149 ~s~~~~l~V~  158 (633)
                       +..+.|.|.
T Consensus        76 -S~~v~l~V~   84 (85)
T d2fcba1          76 -SDPVHLTVL   84 (85)
T ss_dssp             -CCCEEEEEE
T ss_pred             -cccEEEEEE
Confidence             445566664

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=6.7e-12  Score=102.78  Aligned_cols=89  Identities=12%  Similarity=0.102  Sum_probs=66.7

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.++|.|+|++|      .....++.+.+| .++|+.........    +..............+.++|.+|+|+
T Consensus        22 ~v~~~~~~si~l~W~~p------~~~~~~~~i~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~L~p~   90 (125)
T d1uena_          22 RVNVVNSTLAEVHWDPV------PLKSIRGHLQGY-RIYYWKTQSSSKRN----RRHIEKKILTFQGSKTHGMLPGLEPF   90 (125)
T ss_dssp             EEEEEETTEEEEECCCC------CHHHHCSCEEEE-EEEEEEESCCCCST----TCCCCEEEEEEESSCSEEEEESCCSS
T ss_pred             EEEEecCCEEEEEEeCc------cCCCCCcceeeE-EeEEEeecCCccce----eecccceEEEeCCCccEEEECCCCCC
Confidence            88899999999999943      334567889999 88887765443110    11111222334566789999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|.|..|.|++|+
T Consensus        91 t~Y~~~V~A~n~~G~g~~S~  110 (125)
T d1uena_          91 SHYTLNVRVVNGKGEGPASP  110 (125)
T ss_dssp             CEEEEEEEEEESSCEEEECC
T ss_pred             CEEEEEEEEEeCCcccCCCC
Confidence            99999999999999999985

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.3e-12  Score=95.17  Aligned_cols=80  Identities=23%  Similarity=0.277  Sum_probs=62.8

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCe-EEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceE
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPT-ILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSI  149 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~-i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~  149 (633)
                      +|.|..+|....+.+|++++|.|.+.+.|.+. +.|++++..+...      +..|.|.+++.+|+|.|.|.|.|..+  
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~------~~~l~i~~v~~~d~G~Y~C~a~~s~~--   72 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET------NSSLNIVNAKFEDSGEYKCQHQQVNE--   72 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC------SSEEEECSCCGGGCEEEEEECTTSSC--
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeecc------cceeEECCCChhhCCcEEEEecCCCC--
Confidence            58888999889999999999999999888774 6778888877543      45799999999999999999987644  


Q ss_pred             EEEEEEEEE
Q psy15127        150 SLRASLTVH  158 (633)
Q Consensus       150 s~~~~l~V~  158 (633)
                      +..+.|.|.
T Consensus        73 S~~v~l~V~   81 (82)
T d1f2qa1          73 SEPVYLEVF   81 (82)
T ss_dssp             CCCEEEEEE
T ss_pred             cccEEEEEE
Confidence            445666664

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.6e-11  Score=97.70  Aligned_cols=94  Identities=21%  Similarity=0.392  Sum_probs=75.2

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEE-EEeeeeceEEEecCCCCCeEEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVA-AHRITSTSITVSDLKPDTSYMFIVR  487 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~~~Y~~~v~  487 (633)
                      .|++|..+.+...+.+++.|+|.+|...   ++++.+|.|+|+..+....+... ........++|.+|.|++.|.|+|+
T Consensus        20 ~P~~P~~~~~~~~~~~sv~v~W~~P~~~---~g~i~~Y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~   96 (117)
T d1wfoa1          20 VPGPPMGILFPEVRTTSVRLIWQPPAAP---NGIILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRIT   96 (117)
T ss_dssp             CCCCCCCCEEEEECSSEEEEECCCCSCC---CSCCCEEEEEEEESSCCCSCCCEEEECTTCCEEEEESCCSSSEEEEEEE
T ss_pred             CCcCCCCcEEEEecCCEEEEEEECCCCC---CCceEEEeeeeeeccCCCceEeEEecCCceEEEEECCCCCCCEEEEEEE
Confidence            4688999999999999999999998754   46899999999987654444322 2233567899999999999999999


Q ss_pred             EEeccccCCCCCCCCceee
Q psy15127        488 AENSHGLGIPSPVSPITRT  506 (633)
Q Consensus       488 a~n~~G~g~~s~~~~~~~t  506 (633)
                      |.|..|.|++|... .++|
T Consensus        97 A~n~~G~g~~S~~~-~~tT  114 (117)
T d1wfoa1          97 AQTRKGWGEAAEAL-VVTT  114 (117)
T ss_dssp             EECSSCEEEEEEEE-EECC
T ss_pred             EECCCcCCCCcCCE-EEEC
Confidence            99999999887654 3444

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=9.7e-12  Score=94.54  Aligned_cols=72  Identities=15%  Similarity=0.204  Sum_probs=58.8

Q ss_pred             ccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEE
Q psy15127        539 ASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEF  618 (633)
Q Consensus       539 ~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~  618 (633)
                      ..+++.|+|++|          .++.|++| +|+|+..+...      .|+     .+.+.+...+|+|.||+|++.|.|
T Consensus        14 ~~~s~~vsW~~P----------~~~~i~~Y-~i~y~~~~~~~------~~~-----~~~v~~~~~~~~l~gL~P~t~Y~v   71 (93)
T d1owwa_          14 QPNSHPIQWNAP----------QPSHISKY-ILRWRPKNSVG------RWK-----EATIPGHLNSYTIKGLKPGVVYEG   71 (93)
T ss_dssp             CTTCEEEEEECC----------SSSCEEEE-EEEEEETTCSS------CCE-----EEEECSSCCEEEECSCCSSEEEEE
T ss_pred             CCCEEEEEeecc----------cccceeEE-EEEEeeccccc------eee-----eeccCCCccEEEECCcccCcEEEE
Confidence            458999999954          24679999 99999876554      232     334567889999999999999999


Q ss_pred             EEeccccccccccC
Q psy15127        619 FLVPFFKTVEGARL  632 (633)
Q Consensus       619 ~v~a~n~~g~g~~s  632 (633)
                      +|.|.|..|.|+++
T Consensus        72 ~v~av~~~G~s~~~   85 (93)
T d1owwa_          72 QLISIQQYGHQEVT   85 (93)
T ss_dssp             EEEEEESSSCEEEE
T ss_pred             EEEEEeCCCccCcE
Confidence            99999999999875

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.23  E-value=2.6e-11  Score=96.34  Aligned_cols=87  Identities=21%  Similarity=0.174  Sum_probs=62.7

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCc-cceEE--------E--ccCceEEEcCCCCCCCeEEEE
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNA-YGHLH--------V--TQEGTLRIQGVQKEDAGFFVC  315 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~-~~~~~--------~--~~~~~l~i~~~~~~d~G~Y~C  315 (633)
                      +....+..|+++.|.|.+.|.|.|.|.|++++.......... .....        .  ...+.|.|.++..+|.|.|+|
T Consensus        12 P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   91 (109)
T d2fdbp2          12 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTC   91 (109)
T ss_dssp             SCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEEE
T ss_pred             CCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEEEE
Confidence            345677889999999999999999999999765322110000 00000        0  122479999999999999999


Q ss_pred             EEEeCCceeEEEEEEEEE
Q psy15127        316 SALSVAGSTTVRAFLQVR  333 (633)
Q Consensus       316 ~a~n~~g~~~~~~~l~v~  333 (633)
                      .|.|..|....++.|.|.
T Consensus        92 ~a~N~~G~~~~~~~L~Vl  109 (109)
T d2fdbp2          92 LAGNSIGISFHSAWLTVL  109 (109)
T ss_dssp             EEECSSCEEEEEEEEEEC
T ss_pred             EEEECCCEEEEEEEEEEC
Confidence            999999999999998873

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.4e-11  Score=92.32  Aligned_cols=81  Identities=25%  Similarity=0.340  Sum_probs=63.8

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC---CeEEcc---cceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILD---DRSLQIENVGPQDEGLYICDVENLVG  147 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~---~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n~~g  147 (633)
                      |+..+.+..+.+|+++.|.|.+. .|.+.+.|+|++.++..+   +.....   ...|.|.+++.+|+|.|+|.|.|   
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n---   78 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG---   78 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT---
T ss_pred             EEcCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec---
Confidence            45677899999999999999984 688899999999887543   233332   24899999999999999999865   


Q ss_pred             eEEEEEEEEEEe
Q psy15127        148 SISLRASLTVHL  159 (633)
Q Consensus       148 ~~s~~~~l~V~~  159 (633)
                       .+..+.|+|..
T Consensus        79 -~~~~a~l~V~~   89 (90)
T d1x44a1          79 -GQSSAKLSVDL   89 (90)
T ss_dssp             -EEEEEEEEEEC
T ss_pred             -ceEEEEEEEEE
Confidence             34566777753

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.6e-11  Score=94.19  Aligned_cols=89  Identities=22%  Similarity=0.335  Sum_probs=72.5

Q ss_pred             CCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEe
Q psy15127        411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAEN  490 (633)
Q Consensus       411 ~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n  490 (633)
                      ++|.++.+...+++++.|+|++|.      +.+.+|.|+|+..+....+. .........+.|.+|.|++.|.|+|+|.|
T Consensus         3 ~aP~n~~~~~~s~~si~l~W~~p~------~~~~~Y~i~y~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n   75 (92)
T d1qg3a1           3 GAPQNPNAKAAGSRKIHFNWLPPS------GKPMGYRVKYWIQGDSESEA-HLLDSKVPSVELTNLYPYCDYEMKVCAYG   75 (92)
T ss_dssp             CCCEEEEEEECSTTCEEEEEECCS------SCCCEEEEEEEETTSCGGGC-EEEEESSSEEEECSCCTTCEEEEEEEEEC
T ss_pred             CcCCCCEEEEccCCEEEEEEEecC------CCccceEEeeeeccccccEE-EEecCCccEEEECCCCCCcEEEEEEEEEe
Confidence            578889999999999999999985      45789999999876543322 22444567899999999999999999999


Q ss_pred             ccccCCCCCCCCceeec
Q psy15127        491 SHGLGIPSPVSPITRTL  507 (633)
Q Consensus       491 ~~G~g~~s~~~~~~~t~  507 (633)
                      ..|.|++|... .++|.
T Consensus        76 ~~G~g~~S~~~-~~~T~   91 (92)
T d1qg3a1          76 AQGEGPYSSLV-SCRTH   91 (92)
T ss_dssp             SSCBCCCCCCE-EEECC
T ss_pred             CCcCcCCCCCE-EEEcC
Confidence            99999999776 46664

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=6.7e-12  Score=98.13  Aligned_cols=83  Identities=23%  Similarity=0.164  Sum_probs=62.7

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      .+..+++++|.|+|++|    +.......+.+..| .++|+..+...       |.     ........+.++|.||+|+
T Consensus         9 ~~~~~s~tsi~v~W~~p----~~~~~~~~~~~~~y-~v~~~~~~~~~-------~~-----~~~~~~~~~~~~i~~L~p~   71 (100)
T d1x5ja1           9 QASILSHDTIRITWADN----SLPKHQKITDSRYY-TVRWKTNIPAN-------TK-----YKNANATTLSYLVTGLKPN   71 (100)
T ss_dssp             EEEEEETTEEEEEEECT----TSCSSSCCCSSCEE-EEEECBSSSSS-------CC-----CEECCBCSSEEEEESCCTT
T ss_pred             EEEEecCCEEEEEEcCC----ccccccceeeEEEE-EEEeeecCCCc-------ce-----eEecCCCccEEEECCCCCC
Confidence            88999999999999954    22223334566778 88887765543       11     1112345778999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|.|..|.|++|+
T Consensus        72 t~Y~~~V~a~n~~g~s~~S~   91 (100)
T d1x5ja1          72 TLYEFSVMVTKGRRSSTWSM   91 (100)
T ss_dssp             CEECCEEEEECSSCBCCCCC
T ss_pred             CEEEEEEEEEeCCcCcCCCC
Confidence            99999999999999999985

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.22  E-value=7.7e-12  Score=93.58  Aligned_cols=81  Identities=23%  Similarity=0.300  Sum_probs=64.9

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCe-EEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPT-ILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVG  147 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~-i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g  147 (633)
                      ..+|.+..+|....+.+|++++|.|.+.+.|.+. +.|++++..+..      .+..|.|.+++.+|+|.|+|.|.+...
T Consensus         3 lPkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~a~~s~~   76 (84)
T d1fnla1           3 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS------QASSYFIDAATVNDSGEYRCQTNLSTL   76 (84)
T ss_dssp             CCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES------SCSEEEESSCCGGGCEEEEEECSSSCC
T ss_pred             CCCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeee------cceeeEecCCcccCCEEEEEEccCCCc
Confidence            3578899999999999999999999999888775 677888876543      345899999999999999999977543


Q ss_pred             eEEEEEEEEE
Q psy15127        148 SISLRASLTV  157 (633)
Q Consensus       148 ~~s~~~~l~V  157 (633)
                        |..+.|.|
T Consensus        77 --S~~v~L~V   84 (84)
T d1fnla1          77 --SDPVQLEV   84 (84)
T ss_dssp             --CCCEEEEE
T ss_pred             --cccEEEEC
Confidence              34455544

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.4e-11  Score=97.31  Aligned_cols=89  Identities=22%  Similarity=0.305  Sum_probs=73.3

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRA  488 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a  488 (633)
                      .|++|..+.+...+.+++.|+|++|...   ++.+.+|.|+|+..+....+...........++|.+|.|++.|.|+|+|
T Consensus        10 vP~~p~~l~~~~~~~~sv~l~W~~P~~~---ng~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A   86 (106)
T d1wfna1          10 VPGPVGHLSFSEILDTSLKVSWQEPGEK---NGILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAA   86 (106)
T ss_dssp             SCCCCSCCEEESCCSSEEEEECCCCTTC---CSCCCEEEEEEEESSCGGGCCCEEECSSCCEEEEESCCTTCEEEEEEEE
T ss_pred             CCcCCCCcEEEEecCCEEEEEEECCCCC---CCcEEeEEEEEEECCCCcceEEEecCCCeeEEEEccCCCCCEEEEEEEE
Confidence            4678899999989999999999998754   5689999999998765444443334445678999999999999999999


Q ss_pred             EeccccCCCCCC
Q psy15127        489 ENSHGLGIPSPV  500 (633)
Q Consensus       489 ~n~~G~g~~s~~  500 (633)
                      .|..|.|+++..
T Consensus        87 ~n~~G~g~~s~~   98 (106)
T d1wfna1          87 MTSKGQGQVSAS   98 (106)
T ss_dssp             ECSSCEEEEEEE
T ss_pred             ECCCCCcCCcCC
Confidence            999999987754

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=8.1e-12  Score=98.96  Aligned_cols=77  Identities=25%  Similarity=0.241  Sum_probs=61.7

Q ss_pred             ecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeE
Q psy15127        537 PTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKY  616 (633)
Q Consensus       537 ~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y  616 (633)
                      ..+.++|.|+|++|        .+.++.|.+| +++|+.....        |...   ........+.++|.+|++++.|
T Consensus        17 ~~t~~si~l~W~pp--------~~~~~~i~~Y-~v~~~~~~~~--------~~~~---~~~~~~~~~~~~i~~L~p~t~Y   76 (108)
T d1v5ja_          17 VRTPRGVLLHWDPP--------ELVPKRLDGY-VLEGRQGSQG--------WEVL---DPAVAGTETELLVPGLIKDVLY   76 (108)
T ss_dssp             EECSSSEEEEEECC--------SCCSSCCCBE-EEEEEETTCC--------CEEE---EEEECSSCCEEECCCCCTTSCE
T ss_pred             EEcCCEEEEEEEec--------ccCCCceeEE-EEEeeeeeee--------eeec---cccccceeeeEEEEeccCCcEE
Confidence            44678999999965        4567889999 9999876543        4322   1223456889999999999999


Q ss_pred             EEEEeccccccccccCC
Q psy15127        617 EFFLVPFFKTVEGARLD  633 (633)
Q Consensus       617 ~~~v~a~n~~g~g~~s~  633 (633)
                      .|+|+|.|..|.|++|+
T Consensus        77 ~~rV~A~n~~g~s~~S~   93 (108)
T d1v5ja_          77 EFRLVAFAGSFVSDPSN   93 (108)
T ss_dssp             ECCBEEEETTEEEEECS
T ss_pred             EEEEEEEeCCCEeCCcC
Confidence            99999999999999985

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.8e-11  Score=94.98  Aligned_cols=68  Identities=18%  Similarity=0.249  Sum_probs=58.2

Q ss_pred             eEEEcCCeEEEEE------EEeccCCCeEEEEeCCccCCCC-CeEEcccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         81 ATVLSGSVVEFVC------RVGGDPLPTILWRRDDGKMPTG-RAKILDDRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        81 ~~~~~G~~~~L~C------~~~~~p~p~i~W~~~~~~i~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      ..+..|+...|.|      .+.++|.|.|.|+|||.++..+ ++....++.|.|.+++.+|+|.|+|.|.|..+.
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g   83 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLG   83 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcCC
Confidence            4588999999999      5578899999999999998654 445556789999999999999999999987764

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2e-11  Score=96.05  Aligned_cols=81  Identities=11%  Similarity=0.061  Sum_probs=64.3

Q ss_pred             eeeec--ccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccc
Q psy15127        534 ELIPT--ASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLR  611 (633)
Q Consensus       534 ~~~~~--~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~  611 (633)
                      .+..+  ...+|.|+|++      |...+.++.+..| .|+|+..+...       |..     +......+.++|.+|+
T Consensus         9 ~v~~~~~~~~~l~v~W~~------P~~~~~~~~~~~y-~v~~~~~~~~~-------~~~-----~~~~~~~~~~~i~~L~   69 (104)
T d1n26a3           9 TVTAVARNPRWLSVTWQD------PHSWNSSFYRLRF-ELRYRAERSKT-------FTT-----WMVKDLQHHCVIHDAW   69 (104)
T ss_dssp             EEEECTTCTTCEEEEEEC------CTTCCCSSSCEEE-EEEEEETTCSC-------CEE-----EECGGGCSEEEESSCC
T ss_pred             EEEEEecCCCEEEEEEEe------eeecCCCceeEEE-EEEEeeCCCCc-------eee-----eccccceEEEEECCCC
Confidence            55555  45689999994      4334678889999 99999877654       543     2344567899999999


Q ss_pred             cceeEEEEEeccccccccccCC
Q psy15127        612 KFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       612 ~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      |++.|.|+|+|.|..|.|.+||
T Consensus        70 p~t~Y~~rVra~n~~g~g~wSe   91 (104)
T d1n26a3          70 SGLRHVVQLRAQEEFGQGEWSE   91 (104)
T ss_dssp             TTCCEEEEEEEEETTTBSCCCC
T ss_pred             CCCEEEEEEEEEeCCCccCCcC
Confidence            9999999999999999999886

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=5.7e-12  Score=98.80  Aligned_cols=92  Identities=24%  Similarity=0.379  Sum_probs=72.0

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRA  488 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a  488 (633)
                      .|++|..+.+...+.+++.|+|.+|.     ++.+.+|.|+|+..+... +... .......++|.+|.|++.|.|+|+|
T Consensus        10 vP~~P~~~~~~~~~~~si~l~W~~p~-----~~~i~~Y~i~y~~~~~~~-~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A   82 (102)
T d1x5za1          10 VPGQPLNFKAEPESETSILLSWTPPR-----SDTIANYELVYKDGEHGE-EQRI-TIEPGTSYRLQGLKPNSLYYFRLAA   82 (102)
T ss_dssp             CCCCCEEEEEECSSSSEEEEEEECCS-----CCCCCEEEECBEESSSCC-CBCC-EECSSSEEEEECCCTTCEEEECEEE
T ss_pred             CCcCCCCeEEEEccCCEEEEEEECCC-----CCCccceEEEEEeCCCCc-eEEE-EcCCcCEEEECCCCCCCEEEEEEEE
Confidence            35677778888888999999999986     357899999999765432 2211 2224578999999999999999999


Q ss_pred             EeccccCCCCCCCCceeecC
Q psy15127        489 ENSHGLGIPSPVSPITRTLG  508 (633)
Q Consensus       489 ~n~~G~g~~s~~~~~~~t~~  508 (633)
                      .|..|.|++|... .++|.+
T Consensus        83 ~n~~G~g~~S~~v-~~~T~e  101 (102)
T d1x5za1          83 RSPQGLGASTAEI-SARTMQ  101 (102)
T ss_dssp             ECSSCEEEECCCE-EEECCC
T ss_pred             EcCCCEeCCCCCE-EEEcCC
Confidence            9999999988765 456643

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4.2e-11  Score=94.23  Aligned_cols=89  Identities=17%  Similarity=0.194  Sum_probs=68.2

Q ss_pred             CCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEee-eeceEEEecCCCCCeEEEEEEEE
Q psy15127        411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI-TSTSITVSDLKPDTSYMFIVRAE  489 (633)
Q Consensus       411 ~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~-~~~~~~i~~L~p~~~Y~~~v~a~  489 (633)
                      ..|..+.+.....+++.|+|.++...   ++.+..|.|+|+.......|....... ....++|.+|.|++.|.|+|+|.
T Consensus         8 ~~P~~p~~~~~~~~~v~l~W~pp~~~---~~~~~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frVra~   84 (105)
T d2d9qb2           8 TMDPSPEAAPPQAGCLQLSWEPWQPG---LHINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCI   84 (105)
T ss_dssp             ECCC-------CCSCEEEEEECCGGG---TTSCEEEEEEEEESSSCCCCEEEEEECSCEEEEEECSCCSCCCEEEEEEEE
T ss_pred             CCCCCCEeecCCCCeEEEEEcCCCCC---CceeEEEEEEEEecCCccceeeeecccCCcceeEEecccCCeEEEEEEEEE
Confidence            45667777788899999999998754   468899999999887667777554333 45789999999999999999999


Q ss_pred             eccccCCCCCCCC
Q psy15127        490 NSHGLGIPSPVSP  502 (633)
Q Consensus       490 n~~G~g~~s~~~~  502 (633)
                      |..|.|.+|.++.
T Consensus        85 n~~g~G~~S~wS~   97 (105)
T d2d9qb2          85 RWPLPGHWSDWSP   97 (105)
T ss_dssp             ECSSCCCCCCCCC
T ss_pred             eCCCCCCCcCCCC
Confidence            9999999988773

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.1e-11  Score=91.22  Aligned_cols=74  Identities=19%  Similarity=0.265  Sum_probs=57.8

Q ss_pred             eeEEecCCceEEEEEEEeeecCC-eeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCcee-E
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST-T  325 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~  325 (633)
                      ....+.+|+.+.|.|.+.|.|.| ++.|+|||..+...           ..+.+.|.....+|+|.|+|.|.|..|.. +
T Consensus         9 ~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~-----------~~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S   77 (85)
T d1rhfa2           9 KDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP-----------APSPSVLNVTGVTQSTMFSCEAHNLKGLASS   77 (85)
T ss_dssp             CCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCS-----------EESSEEEEECCCSSCEEEEEEEEETTEEEEC
T ss_pred             CcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCC-----------CCcceEEecCCccccEEEEEEEEcCCCcEEE
Confidence            34567789999999999999987 99999999877421           12345566666789999999999999965 4


Q ss_pred             EEEEEEE
Q psy15127        326 VRAFLQV  332 (633)
Q Consensus       326 ~~~~l~v  332 (633)
                      ..+.|.|
T Consensus        78 ~~~~v~V   84 (85)
T d1rhfa2          78 RTATVHL   84 (85)
T ss_dssp             CCEEEEE
T ss_pred             EEEEEEE
Confidence            4667665

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.9e-11  Score=96.66  Aligned_cols=90  Identities=12%  Similarity=-0.009  Sum_probs=66.1

Q ss_pred             eeEEecCCceEEEEEEEeeec---CCeeEEEECCEEEEeccCCccceEEE--c-----cCceEEEcCCCCCCCeEEEEEE
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSP---LPSVFWTQEGSQVLMFPGNAYGHLHV--T-----QEGTLRIQGVQKEDAGFFVCSA  317 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p---~~~v~W~~~g~~~~~~~~~~~~~~~~--~-----~~~~l~i~~~~~~d~G~Y~C~a  317 (633)
                      ..+.+..|++++|.|.+.|.|   .|.+.|+|++............+...  .     ....|.|.++...|+|.|+|.|
T Consensus         8 ~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   87 (113)
T d2dava1           8 QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEV   87 (113)
T ss_dssp             CCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEE
T ss_pred             ceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEEE
Confidence            345677899999999999998   47999999875322111111111111  1     1236999999999999999999


Q ss_pred             EeCCceeEEEEEEEEEeccc
Q psy15127        318 LSVAGSTTVRAFLQVREFCV  337 (633)
Q Consensus       318 ~n~~g~~~~~~~l~v~~~~~  337 (633)
                      .|..|..+..+.|.|.+.+.
T Consensus        88 ~N~~G~~~~~~~L~V~~~~~  107 (113)
T d2dava1          88 TYKDKFDSCSFDLEVHESTG  107 (113)
T ss_dssp             ECSSCEEEECCEEEEECCCC
T ss_pred             EeCCCEEEEEEEEEEEcCCC
Confidence            99999999999999986543

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=5.2e-11  Score=93.74  Aligned_cols=90  Identities=19%  Similarity=0.267  Sum_probs=69.1

Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEee-eeceEEEecCCCCCeEEEEEEE
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI-TSTSITVSDLKPDTSYMFIVRA  488 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~-~~~~~~i~~L~p~~~Y~~~v~a  488 (633)
                      +..|..+.+.....+++.|+|+++...   ++.+..|.|+|+.......|....... ....++|.+|.|++.|.|+|+|
T Consensus         8 ~~~P~~p~~~~~~~~~i~v~W~pp~~~---~~~~~~Y~i~y~~~~~~~~w~~v~~~~~~~~~~~l~~L~p~t~Y~frVra   84 (106)
T d1cd9b2           8 QALDIGPDVVSHQPGCLWLSWKPWKPS---EYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRC   84 (106)
T ss_dssp             EECCC-------CCSCEEEEEECCGGG---TTSCEEEEEEEEESSTTCCCEEEEEEESCEEEEEECCCCSCSCEEEEEEE
T ss_pred             CCCCCCCeEecCCCCEEEEEEcCcccC---CccceEEEEEEeeccccccceeeecccCCceEEEEeccCCCeEEEEEEEE
Confidence            345666777788899999999998754   467899999999876667787654443 4678999999999999999999


Q ss_pred             EeccccCCCCCCCC
Q psy15127        489 ENSHGLGIPSPVSP  502 (633)
Q Consensus       489 ~n~~G~g~~s~~~~  502 (633)
                      .|..|.|.+|.++.
T Consensus        85 ~~~~g~g~wS~wS~   98 (106)
T d1cd9b2          85 IRSSLPGFWSPWSP   98 (106)
T ss_dssp             EESSSCCCCCCCCC
T ss_pred             EeCCCCCCCcCCCC
Confidence            99999999998874

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.20  E-value=5.6e-11  Score=91.87  Aligned_cols=84  Identities=14%  Similarity=0.231  Sum_probs=60.6

Q ss_pred             eEEecCCceEEEEEEEeeecC-CeeEEEEC-CEEEEeccCCccceE-EEccCceEEEcCCCCCCCeEEEEEEEeCCcee-
Q psy15127        249 LLIWNHPRVNRLSCFAEGSPL-PSVFWTQE-GSQVLMFPGNAYGHL-HVTQEGTLRIQGVQKEDAGFFVCSALSVAGST-  324 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g~p~-~~v~W~~~-g~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-  324 (633)
                      ...+..|+++.|.|.+.|.|+ +.+.|+++ |..+.. ........ .....++|.|.++..+|+|.|+|.|.|..|.. 
T Consensus         9 ~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~-~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   87 (97)
T d1epfa1           9 QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP-NQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQS   87 (97)
T ss_dssp             SEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECC-BSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEE
T ss_pred             CEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeee-ccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEE
Confidence            355678999999999999986 79999994 444431 11111111 12234579999999999999999999999975 


Q ss_pred             EEEEEEEEE
Q psy15127        325 TVRAFLQVR  333 (633)
Q Consensus       325 ~~~~~l~v~  333 (633)
                      +.++.|.|.
T Consensus        88 ~~tv~l~V~   96 (97)
T d1epfa1          88 EATVNVKIF   96 (97)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            456676664

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=6.7e-12  Score=97.86  Aligned_cols=91  Identities=13%  Similarity=0.100  Sum_probs=70.7

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEec-cCCC--eEEEEeCCccCCCCCeEE-cccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGG-DPLP--TILWRRDDGKMPTGRAKI-LDDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~-~p~p--~i~W~~~~~~i~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      .|+.+...+....+.+|+.++|.|.+.| .|.+  .++|++++..+....... .....|.|..+..+|+|.|+|+|.|.
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~   82 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELD   82 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccccccceEEEEEeeehhHCCCEEEEEEEeC
Confidence            4677888888888999999999999986 5655  588999998875321111 12357999999999999999999999


Q ss_pred             CceEEEEEEEEEEee
Q psy15127        146 VGSISLRASLTVHLL  160 (633)
Q Consensus       146 ~g~~s~~~~l~V~~~  160 (633)
                      .|.......+.+..+
T Consensus        83 ~g~~~~~~~~~~s~p   97 (103)
T d1iama1          83 LRPQGLELFENTSAP   97 (103)
T ss_dssp             CGGGTSCEEEEECCC
T ss_pred             CCCccCeEeeeEcCC
Confidence            988666666666554

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=1.9e-11  Score=98.97  Aligned_cols=97  Identities=21%  Similarity=0.182  Sum_probs=72.7

Q ss_pred             CCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEe---cCCCCeEEEEEeeeeceEEEecCCCCCeEEE
Q psy15127        408 LFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSS---DLQTGWVVAAHRITSTSITVSDLKPDTSYMF  484 (633)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~---~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~  484 (633)
                      ..|++|..+.+..++.+++.|+|++|...+  +..+..|.|+|+..   .....|... .....+.++|.+|+|++.|.|
T Consensus        14 ~pp~~P~~p~v~~vt~~sv~l~W~~P~~~~--g~~i~~y~i~y~~~~~~~~~~~~~~~-~~~~~~~~~v~~L~p~t~Y~f   90 (120)
T d1wfua_          14 VPLSKPHPPVVGKVTHHSIELYWDLEQKEK--RQGPQEQWLRFSIEEEDPKMHSYGVI-YTGYATRHVVEGLEPRTLYKF   90 (120)
T ss_dssp             CCCCCCCCCBCCCEETTEEEEECTTTSCSC--CCSCGGGCCEEEEEEECTTTCCEEEE-EEESCSEEEEESCCTTCEEEE
T ss_pred             cCCCcCCCCEEeEecCCEEEEEEECCcccC--cccccceeeeeeeecccccccceeee-ccccccEEeCCCCCCCcEeeE
Confidence            346677777788889999999999987653  45677777777643   222345543 334567899999999999999


Q ss_pred             EEEEEeccccCCCCCCCCceeecC
Q psy15127        485 IVRAENSHGLGIPSPVSPITRTLG  508 (633)
Q Consensus       485 ~v~a~n~~G~g~~s~~~~~~~t~~  508 (633)
                      +|+|.|..|.|++|.... +.|..
T Consensus        91 rV~A~n~~G~s~~S~~~~-~~T~~  113 (120)
T d1wfua_          91 RLKVTSPSGEYEYSPVVS-VATTR  113 (120)
T ss_dssp             EEEEECSSSCEEECCCEE-EECCC
T ss_pred             EEEEEeCCcEeCCCCCEE-EEeCC
Confidence            999999999999987763 55543

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.5e-11  Score=93.83  Aligned_cols=88  Identities=18%  Similarity=0.311  Sum_probs=71.2

Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCC----CeEEEE-EeeeeceEEEecCCCCCeEEE
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQT----GWVVAA-HRITSTSITVSDLKPDTSYMF  484 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~----~~~~~~-~~~~~~~~~i~~L~p~~~Y~~  484 (633)
                      |++|..+++...+.+++.|+|.+|...   ++++.+|.|+|+......    .|.... .......++|.+|+|++.|.|
T Consensus         3 P~~P~~~~~~~~~~~sv~v~W~~P~~~---~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~   79 (103)
T d1qg3a2           3 PSEPGRLAFNVVSSTVTQLSWAEPAET---NGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRY   79 (103)
T ss_dssp             CCCCCCCEEEEEETTEEEEECCCCSCC---SSCCCEEEEEEEEBCTTSCBCSCCEEEEECCTTCCEEEECCCCTTCCEEE
T ss_pred             CccCCCcEEEEecCCEEEEEEEECccC---CCCceEEEEEeeccccccccccceEEEEecCCCceEEEEeecCCCCEEEE
Confidence            678999999999999999999998754   689999999998765322    233222 223457899999999999999


Q ss_pred             EEEEEeccccCCCCCC
Q psy15127        485 IVRAENSHGLGIPSPV  500 (633)
Q Consensus       485 ~v~a~n~~G~g~~s~~  500 (633)
                      +|+|.|..|.|+++..
T Consensus        80 ~V~A~n~~G~g~~s~~   95 (103)
T d1qg3a2          80 TVKARNGAGWGPEREA   95 (103)
T ss_dssp             EEEEEETTEECCCEEE
T ss_pred             EEEEEcCCccCCCccc
Confidence            9999999999987644

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.5e-11  Score=93.98  Aligned_cols=80  Identities=15%  Similarity=0.197  Sum_probs=63.4

Q ss_pred             CCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEE--c----cCceEEEcCCCCCCCeEEEEEEEeCCceeEEE
Q psy15127        254 HPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV--T----QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  327 (633)
Q Consensus       254 ~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~--~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  327 (633)
                      .++...|.|.+.|+|.|++.|+++|..+...   ....+..  .    ..+.|.|.+++.+|.|.|+|.|.|..|..+..
T Consensus        15 ~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~---~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~   91 (103)
T d1wwbx_          15 SDHHWCIPFTVKGNPKPALQWFYNGAILNES---KYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ   91 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEECCC---SSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             cceeEEEEEEEEEeCCCEEEEEECCEEeeee---eeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEE
Confidence            4467789999999999999999999988521   1111111  1    12369999999999999999999999999999


Q ss_pred             EEEEEEecc
Q psy15127        328 AFLQVREFC  336 (633)
Q Consensus       328 ~~l~v~~~~  336 (633)
                      +.|.|.+.|
T Consensus        92 ~~v~V~~~P  100 (103)
T d1wwbx_          92 ISAHFMGWP  100 (103)
T ss_dssp             EEECCSCCC
T ss_pred             EEEEEEeCC
Confidence            999887644

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.5e-11  Score=93.69  Aligned_cols=77  Identities=13%  Similarity=0.169  Sum_probs=63.6

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.+++.|+|++|          .++.+++| .|+|+..+...       |..    ........++|+|.||+|+
T Consensus        13 ~v~~~t~~si~l~W~~p----------~~~~i~~Y-~v~~~~~~~~~-------~~~----~~~~~~~~t~~~i~~L~p~   70 (95)
T d2fnba_          13 SFVDITDSSIGLRWTPL----------NSSTIIGY-RITVVAAGEGI-------PIF----EDFVDSSVGYYTVTGLEPG   70 (95)
T ss_dssp             EEECCCSSCEEEECCCC----------CCSSCCEE-EEEEEEETSCC-------EEE----EEECCSSCSEEEECCCCTT
T ss_pred             EEEEEcCCEEEEEEEec----------CCceEEeE-EEEEEEeeccc-------eEE----EEEeCCCCeEEEEecccCC
Confidence            88999999999999953          24578999 99998876553       221    2234567899999999999


Q ss_pred             eeEEEEEeccccccccccC
Q psy15127        614 TKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s  632 (633)
                      +.|.|+|+|.|..|+|+|+
T Consensus        71 t~Y~~~V~a~~~~g~s~p~   89 (95)
T d2fnba_          71 IDYDISVITLINGGESAPT   89 (95)
T ss_dssp             SEEEEEEEEEETTEECCCC
T ss_pred             EEEEEEEEEEeCCcEeCCE
Confidence            9999999999999999986

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.9e-11  Score=93.07  Aligned_cols=85  Identities=26%  Similarity=0.416  Sum_probs=68.4

Q ss_pred             CCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEe
Q psy15127        411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAEN  490 (633)
Q Consensus       411 ~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n  490 (633)
                      ++|. +.......+++.|+|.+|...   ++++.+|.|+|+..+. ..|..........+++|.+|.|++.|.|+|+|.|
T Consensus         2 ~~P~-~~~~~~~~~sv~l~W~pP~~~---~g~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n   76 (94)
T d2dn7a1           2 GRPT-MMISTTAMNTALLQWHPPKEL---PGELLGYRLQYCRADE-ARPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKN   76 (94)
T ss_dssp             CCCE-EEEEECSTTEEEEEEECCSSC---SSCCCEEEEEEEETTC-SSCEEEEEETTCCEEEEECCCTTCEEEEEEEEEE
T ss_pred             CCCc-EeEEEEeCCEEEEEEeCCCCC---CCceEEEEEEEEEcCC-CCcEEEEcCCCccEEEEEccCCeeEEEEEEEEEc
Confidence            4554 445567788999999998744   5789999999998764 4455555555678899999999999999999999


Q ss_pred             ccccCCCCCC
Q psy15127        491 SHGLGIPSPV  500 (633)
Q Consensus       491 ~~G~g~~s~~  500 (633)
                      ..|.|+++..
T Consensus        77 ~~G~g~~s~~   86 (94)
T d2dn7a1          77 RAGLGEEFEK   86 (94)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCcCCCCccE
Confidence            9999987754

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=7.1e-11  Score=93.74  Aligned_cols=85  Identities=19%  Similarity=0.067  Sum_probs=65.1

Q ss_pred             eeEEecCCceEEEEEEEeeec---CCeeEEEECCEEEEeccCCccceEEEc---------cCceEEEcCCCCCCCeEEEE
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSP---LPSVFWTQEGSQVLMFPGNAYGHLHVT---------QEGTLRIQGVQKEDAGFFVC  315 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p---~~~v~W~~~g~~~~~~~~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C  315 (633)
                      ..+.+..|++++|.|.+.|.|   .|.+.|++++.........  .++...         ....|.|.+++..|+|.|+|
T Consensus        12 ~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   89 (110)
T d2avga1          12 QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVG--QHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRC   89 (110)
T ss_dssp             CCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCS--SSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEE
T ss_pred             CeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCC--ceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEE
Confidence            345677899999999999999   4789999987533211111  111111         12369999999999999999


Q ss_pred             EEEeCCceeEEEEEEEEEe
Q psy15127        316 SALSVAGSTTVRAFLQVRE  334 (633)
Q Consensus       316 ~a~n~~g~~~~~~~l~v~~  334 (633)
                      .|.|..|..+.++.|.|.+
T Consensus        90 ~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          90 EVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             EEEETTEEEEEEEEEEEES
T ss_pred             EEEECCCeEEEEEEEEEEe
Confidence            9999999999999999975

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=6.4e-11  Score=92.91  Aligned_cols=87  Identities=17%  Similarity=0.098  Sum_probs=64.1

Q ss_pred             eeEEecCCceEEEEEEEeeecC-CeeEEEECCEEEEeccCCccceEEEcc---CceEEEcCCCCCCCeEEEEEEEeCCce
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPL-PSVFWTQEGSQVLMFPGNAYGHLHVTQ---EGTLRIQGVQKEDAGFFVCSALSVAGS  323 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~-~~v~W~~~g~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~  323 (633)
                      ....+..|+++.|.|.+.|.|. |.++|+|++..+...............   ...|.|.++..+|+|.|+|.|.|..|.
T Consensus        11 ~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   90 (104)
T d2aw2a1          11 SEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNL   90 (104)
T ss_dssp             EEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCe
Confidence            3456778999999999999995 899999988755432222111111111   125999999999999999999999998


Q ss_pred             eE-EEEEEEEEe
Q psy15127        324 TT-VRAFLQVRE  334 (633)
Q Consensus       324 ~~-~~~~l~v~~  334 (633)
                      .. .++.|.|.+
T Consensus        91 ~~s~~~~l~V~e  102 (104)
T d2aw2a1          91 IESHSTTLYVTD  102 (104)
T ss_dssp             EECCCEEEEEEC
T ss_pred             EEEEEEEEEEEE
Confidence            64 577888765

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.8e-11  Score=99.83  Aligned_cols=88  Identities=20%  Similarity=0.379  Sum_probs=67.2

Q ss_pred             cceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccC------------------------CccceEE---EccCc
Q psy15127        246 MASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPG------------------------NAYGHLH---VTQEG  298 (633)
Q Consensus       246 ~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~------------------------~~~~~~~---~~~~~  298 (633)
                      ....+.+..|+.++|.|.+.|.|.|.+.|++++..+.....                        ....+..   .....
T Consensus        15 ~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   94 (130)
T d1gxea_          15 IPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRS   94 (130)
T ss_dssp             CCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEE
T ss_pred             CCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEE
Confidence            44567788999999999999999999999997754321100                        0011111   12234


Q ss_pred             eEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127        299 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR  333 (633)
Q Consensus       299 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  333 (633)
                      +|.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus        95 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          95 IFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             EEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            69999999999999999999999999999998885

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.5e-11  Score=99.50  Aligned_cols=81  Identities=12%  Similarity=0.270  Sum_probs=64.8

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.++|.|.|++|        .+.++.+..| .++|+.......     .|.     .+......+.++|.+|+++
T Consensus        24 ~v~~~~~~sv~l~W~~p--------~~~~~~i~~~-~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~~i~~L~p~   84 (127)
T d1ueya_          24 ELTDQLDKSVQLSWTPG--------DDNNSPITKF-IIEYEDAMHKPG-----LWH-----HQTEVSGTQTTAQLNLSPY   84 (127)
T ss_dssp             EEECCSSSCEEEEEECC--------CCCSSCEEEE-EEEEEBTTTCTT-----CEE-----EEEEEESSCCEEEECCCTT
T ss_pred             EEEEecCCeEEEEEeCC--------cccccceEee-eeeeccccccce-----eEE-----EEeecCCceEEEECCCccC
Confidence            78899999999999965        5677889999 999987655541     122     2222345778999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|+|..|+|.+|+
T Consensus        85 t~Y~frV~A~n~~G~s~~S~  104 (127)
T d1ueya_          85 VNYSFRVMAVNSIGKSLPSE  104 (127)
T ss_dssp             CEECCEEEEEESSCBCCCCS
T ss_pred             CEEEEEEEEEcCCcCcCCcC
Confidence            99999999999999999874

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=5.8e-11  Score=95.50  Aligned_cols=97  Identities=26%  Similarity=0.316  Sum_probs=71.0

Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEE
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAE  489 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~  489 (633)
                      |+.|..........+.+.|+|+++.... .++.+.+|.|+|+..+. ..+..   ......+.+.+|.+++.|.|+|+|.
T Consensus        18 P~~pp~~~~~~~~~~~i~v~W~~~~~~~-~~g~i~~Y~v~y~~~~~-~~~~~---~~~~~~~~~~~L~p~t~Y~~~V~A~   92 (117)
T d1wj3a_          18 PSQPPGNVVWNATDTKVLLNWEQVKAME-NESEVTGYKVFYRTSSQ-NNVQV---LNTNKTSAELVLPIKEDYIIEVKAT   92 (117)
T ss_dssp             CCCCCCSCBCCEETTEEEEECCCCCCCS-SSCCEEEEEEEEEESSC-SSCEE---EEESSSEEEEECCCSSCEEEEEEEE
T ss_pred             cCCCCcceEEeecCCEEEEEEeeccccc-CCCceeEEEEEEEecCC-Cceee---eeceeeEEEeeccCCcEEEEEEEEE
Confidence            4444444555678899999999865543 25789999999988763 34432   2234567888999999999999999


Q ss_pred             eccccCCCCCCCCceeecCCCC
Q psy15127        490 NSHGLGIPSPVSPITRTLGLNS  511 (633)
Q Consensus       490 n~~G~g~~s~~~~~~~t~~~~p  511 (633)
                      |..|.|++|....+.++.+..|
T Consensus        93 n~~G~G~~S~~v~v~~~~~~~P  114 (117)
T d1wj3a_          93 TDGGDGTSSEQIRIPRITSSGP  114 (117)
T ss_dssp             ESSCCCCBCCCEEECCCCCCCS
T ss_pred             cCCccCCCCCCEEEeccCCCCC
Confidence            9999999997654444444444

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.18  E-value=1.9e-11  Score=94.55  Aligned_cols=75  Identities=21%  Similarity=0.354  Sum_probs=59.4

Q ss_pred             CCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCcee-EEEEEEE
Q psy15127        254 HPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST-TVRAFLQ  331 (633)
Q Consensus       254 ~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~  331 (633)
                      .+++++|.|.+.|.|.|.+.|+++|..+...   ...+........|.|..+..+|.|.|+|.|.|..|.. +..+.|+
T Consensus        21 ~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          21 AEEKVTLTCRARANPPATYRWKMNGTELKMG---PDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             SCCEEEECCEEEEESCCEEEEEETTEECCCS---TTSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CCCeEEEEEEEEEeCCCEEEEEEeeeeccCC---CCceEEeeeeeEEEEecccccCCEEEEEEEEECCCEEEEEEEEEe
Confidence            3478999999999999999999999987532   2234444455678888899999999999999999986 3455553

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=99.17  E-value=1.1e-11  Score=93.95  Aligned_cols=71  Identities=18%  Similarity=0.176  Sum_probs=55.2

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      .+..++.++|+|+|++|         ..++.+.+| .+.+..    .        .     .  .....++|++.||+|+
T Consensus        11 ~~~~~~~~sv~lsW~~p---------~~~~~i~~Y-~i~~~~----~--------~-----~--~~~~~t~~~~~~L~p~   61 (88)
T d1k85a_          11 ASTAQTTSSITLSWTAS---------TDNVGVTGY-DVYNGT----A--------L-----A--TTVTGTTATISGLAAD   61 (88)
T ss_dssp             EEEEECSSCEEEEEECC---------SCCSSEEEE-EEEESS----S--------E-----E--EEESSSEEEECCCCSS
T ss_pred             EEEEecCCEEEEEEeCC---------CCCCCEEEE-EEEccc----e--------E-----E--EecCCCEEEECCCCCC
Confidence            78889999999999954         234568889 776421    1        0     0  1124688999999999


Q ss_pred             eeEEEEEecccccc-ccccCC
Q psy15127        614 TKYEFFLVPFFKTV-EGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g-~g~~s~  633 (633)
                      +.|.|+|+|.|..| .|++|+
T Consensus        62 t~Y~~~V~A~n~~G~~s~~S~   82 (88)
T d1k85a_          62 TSYTFTVKAKDAAGNVSAASN   82 (88)
T ss_dssp             CEEEEEEEEEETTTEECCCCC
T ss_pred             CEEEEEEEEEECCCCcCCCCc
Confidence            99999999999999 799885

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.1e-10  Score=89.85  Aligned_cols=82  Identities=18%  Similarity=0.240  Sum_probs=67.8

Q ss_pred             CCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEec
Q psy15127        412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENS  491 (633)
Q Consensus       412 ~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~  491 (633)
                      +|..+.+..++.+++.|+|.++.     +..+.+|.|+|+..+..............+.++|.+|.|++.|.|+|+|.|.
T Consensus         8 ~P~~l~v~~~t~~si~l~W~~p~-----~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~~V~a~~~   82 (95)
T d2fnba_           8 QLTDLSFVDITDSSIGLRWTPLN-----SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLIN   82 (95)
T ss_dssp             CCTTCEEECCCSSCEEEECCCCC-----CSSCCEEEEEEEEETSCCEEEEEECCSSCSEEEECCCCTTSEEEEEEEEEET
T ss_pred             cCCCeEEEEEcCCEEEEEEEecC-----CceEEeEEEEEEEeeccceEEEEEeCCCCeEEEEecccCCEEEEEEEEEEeC
Confidence            68899999999999999999986     3578999999998765333333333445688999999999999999999999


Q ss_pred             cccCCCC
Q psy15127        492 HGLGIPS  498 (633)
Q Consensus       492 ~G~g~~s  498 (633)
                      .|.|+++
T Consensus        83 ~g~s~p~   89 (95)
T d2fnba_          83 GGESAPT   89 (95)
T ss_dssp             TEECCCC
T ss_pred             CcEeCCE
Confidence            9998776

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.17  E-value=1.1e-11  Score=97.40  Aligned_cols=80  Identities=18%  Similarity=0.153  Sum_probs=64.5

Q ss_pred             eeEEecCCceEEEEEEE-eeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEE
Q psy15127        248 SLLIWNHPRVNRLSCFA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV  326 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  326 (633)
                      ..+.+.+|+.+.|.|.+ .|.|.+.+.|+++|..+...  ....+.....+++|.|.++..+|+|.|+|.|.|..|..+.
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~--~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~   89 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIP--ADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITK   89 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCC--CCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEE
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeecccccc--ccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEE
Confidence            44678899999999997 78999999999999765422  1223444556778999999999999999999999998776


Q ss_pred             EEE
Q psy15127        327 RAF  329 (633)
Q Consensus       327 ~~~  329 (633)
                      ++.
T Consensus        90 ~v~   92 (105)
T d1cs6a2          90 SVF   92 (105)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            644

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=5.3e-11  Score=91.20  Aligned_cols=83  Identities=16%  Similarity=0.244  Sum_probs=62.7

Q ss_pred             CCeeeeCCC-ceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC--CeEEcc---cceEEEccCCCCCCeEEEEEEEe
Q psy15127         71 KPFPISEPS-DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG--RAKILD---DRSLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus        71 ~p~~~~~~~-~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~--~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                      +|.|+.... ...+.+|+.+.|.|.+. .|.+.++|+|+|..+..+  +..+..   ...|.|.++..+|+|.|+|.|.|
T Consensus         5 ~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n   83 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG   83 (94)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT
T ss_pred             CCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEee
Confidence            455555544 45799999999999985 588899999999988543  233322   24799999999999999999855


Q ss_pred             CCceEEEEEEEEEE
Q psy15127        145 LVGSISLRASLTVH  158 (633)
Q Consensus       145 ~~g~~s~~~~l~V~  158 (633)
                          .+..+.|.|.
T Consensus        84 ----~~~s~~l~V~   93 (94)
T d1pd6a_          84 ----EKCSTELFVK   93 (94)
T ss_dssp             ----EEECCEEEEE
T ss_pred             ----EEEEEEEEEE
Confidence                4455667665

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=9.9e-11  Score=91.35  Aligned_cols=86  Identities=22%  Similarity=0.259  Sum_probs=63.6

Q ss_pred             eeEEecCCceEEEEEEEeeecCC-eeEEEECCEEEEeccC-CccceEEEc---cCceEEEcCCC-CCCCeEEEEEEEeCC
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLP-SVFWTQEGSQVLMFPG-NAYGHLHVT---QEGTLRIQGVQ-KEDAGFFVCSALSVA  321 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~g~~~~~~~~-~~~~~~~~~---~~~~l~i~~~~-~~d~G~Y~C~a~n~~  321 (633)
                      ....+.+|+.+.|.|.+.|.|++ .+.|++++........ ....++...   ....|.|.++. ..|+|.|+|.|.|..
T Consensus        10 ~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~   89 (101)
T d3b5ha1          10 SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSK   89 (101)
T ss_dssp             SEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETT
T ss_pred             CcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEEEEEEEECC
Confidence            44556789999999999999988 7999997643221111 112223222   33479999998 479999999999999


Q ss_pred             ceeEEEEEEEEE
Q psy15127        322 GSTTVRAFLQVR  333 (633)
Q Consensus       322 g~~~~~~~l~v~  333 (633)
                      |..+..+.|.|+
T Consensus        90 G~~~~~~~L~Vr  101 (101)
T d3b5ha1          90 GSDQAIITLRVR  101 (101)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             CEEEEEEEEEEC
Confidence            999999988874

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2.7e-11  Score=91.99  Aligned_cols=83  Identities=19%  Similarity=0.258  Sum_probs=66.3

Q ss_pred             CCCcEEEEe--eCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEe
Q psy15127        413 PAAPVILNT--TRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAEN  490 (633)
Q Consensus       413 p~~~~~~~~--~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n  490 (633)
                      |..+.+...  ..+++.|+|++|.     ++.+.+|.|+|+..+....|.........+.++|.+|.|++.|.|+|.|.|
T Consensus         3 P~~~~vt~~~~~~~s~~vsW~~P~-----~~~i~~Y~i~y~~~~~~~~~~~~~v~~~~~~~~l~gL~P~t~Y~v~v~av~   77 (93)
T d1owwa_           3 PVEVFITETPSQPNSHPIQWNAPQ-----PSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQ   77 (93)
T ss_dssp             CCEEECCCCSSCTTCEEEEEECCS-----SSCEEEEEEEEEETTCSSCCEEEEECSSCCEEEECSCCSSEEEEEEEEEEE
T ss_pred             CcccEEEEccCCCCEEEEEeeccc-----ccceeEEEEEEeeccccceeeeeccCCCccEEEECCcccCcEEEEEEEEEe
Confidence            444444433  3479999999986     457999999999887666676655566678999999999999999999999


Q ss_pred             ccccCCCCCC
Q psy15127        491 SHGLGIPSPV  500 (633)
Q Consensus       491 ~~G~g~~s~~  500 (633)
                      ..|.|+.+..
T Consensus        78 ~~G~s~~~~~   87 (93)
T d1owwa_          78 QYGHQEVTRF   87 (93)
T ss_dssp             SSSCEEEEEE
T ss_pred             CCCccCcEEE
Confidence            9999987643

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=5.3e-11  Score=94.57  Aligned_cols=98  Identities=23%  Similarity=0.289  Sum_probs=74.6

Q ss_pred             CCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeE--EE--EEeeeeceEEEecCCCCCeEE
Q psy15127        408 LFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWV--VA--AHRITSTSITVSDLKPDTSYM  483 (633)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~--~~--~~~~~~~~~~i~~L~p~~~Y~  483 (633)
                      .++++|.++.+...+.+++.|+|.+|.... .++++.+|.|+|+..+......  ..  ........++|.+|.|++.|.
T Consensus         7 ~P~~pP~~v~v~~~~~~si~l~W~~p~~~~-~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~   85 (109)
T d1va9a1           7 APDGPPMDVTLQPVTSQSIQVTWKAPKKEL-QNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYG   85 (109)
T ss_dssp             CCSSCCEEEEEEECSSSEEEEEEECCCSST-TCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCCSSCCEE
T ss_pred             CCCCCCcCcEEEEecCCEEEEEEcCCCCCC-CCCcEEEEEEEEeeccccccceeeeeEEecCCCeeEEEECCCCcceEEE
Confidence            345678888888899999999999986553 2478999999999775433221  11  112245789999999999999


Q ss_pred             EEEEEEeccccCCCCCCCCceeec
Q psy15127        484 FIVRAENSHGLGIPSPVSPITRTL  507 (633)
Q Consensus       484 ~~v~a~n~~G~g~~s~~~~~~~t~  507 (633)
                      |+|+|.|..|.|++|.+. .++|+
T Consensus        86 ~~V~a~n~~G~g~~S~~v-~~~T~  108 (109)
T d1va9a1          86 VVVQAFNRAGTGPSSSEI-NATTL  108 (109)
T ss_dssp             EEEEEEETTEECCCCCCE-ECCCC
T ss_pred             EEEEEEcCCcCCCCCCCE-EEEcC
Confidence            999999999999998776 35553

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=4.5e-11  Score=95.07  Aligned_cols=93  Identities=23%  Similarity=0.328  Sum_probs=63.7

Q ss_pred             ceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEEeeeEEEEeecCCCCCCccccccccee
Q psy15127        170 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASL  249 (633)
Q Consensus       170 ~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~a~~~~~~~p~~~~~~~~~~  249 (633)
                      ...+.+|+++.|.|.+..|.|.+.+.|++++..+............                                  
T Consensus        11 ~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~----------------------------------   56 (110)
T d1f97a2          11 PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFM----------------------------------   56 (110)
T ss_dssp             CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCS----------------------------------
T ss_pred             CCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeec----------------------------------
Confidence            3468899999999996678999999999998877543221110000                                  


Q ss_pred             EEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEE--
Q psy15127        250 LIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR--  327 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~--  327 (633)
                                                            ..........+.|.|.+++.+|+|.|+|.|.|..|....+  
T Consensus        57 --------------------------------------~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~   98 (110)
T d1f97a2          57 --------------------------------------NSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEA   98 (110)
T ss_dssp             --------------------------------------SSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCC
T ss_pred             --------------------------------------CceEEEeecccceEECCCCccCCEEEEEEEEECCCcEEEEEE
Confidence                                                  0001111234579999999999999999999999987654  


Q ss_pred             EEEEEEe
Q psy15127        328 AFLQVRE  334 (633)
Q Consensus       328 ~~l~v~~  334 (633)
                      ++|.|.+
T Consensus        99 v~l~V~~  105 (110)
T d1f97a2          99 AHMDAVE  105 (110)
T ss_dssp             EEEEEES
T ss_pred             EEEEEEe
Confidence            5555543

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.16  E-value=7.5e-11  Score=89.03  Aligned_cols=75  Identities=15%  Similarity=0.296  Sum_probs=59.9

Q ss_pred             EEecCCceEEEEEEEeee-cCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCcee-EEE
Q psy15127        250 LIWNHPRVNRLSCFAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST-TVR  327 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~-p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~  327 (633)
                      ..+.+|++++|.|.+.+. |.+.+.|+|||..+..          ...+..|.|.+++.+|+|.|+|.|.|..|.. +..
T Consensus        12 ~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~----------~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~   81 (89)
T d1fnla2          12 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY----------FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSET   81 (89)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE----------EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred             CeEccCCeEEEEEEecCCCCCcEEEEEEcccccce----------eccccccEECccceeccceEEEEEEeCCCCeEEee
Confidence            346789999999999755 5568999999987642          1235589999999999999999999998875 356


Q ss_pred             EEEEEEe
Q psy15127        328 AFLQVRE  334 (633)
Q Consensus       328 ~~l~v~~  334 (633)
                      +.|.|.+
T Consensus        82 v~itV~E   88 (89)
T d1fnla2          82 VNITITQ   88 (89)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            7777764

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.16  E-value=2.9e-11  Score=92.98  Aligned_cols=75  Identities=21%  Similarity=0.368  Sum_probs=60.8

Q ss_pred             eeEEecCCceEEEEEEEeeecCC-eeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeE
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT  325 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  325 (633)
                      ..+.+.+|+.+.|.|.+.|.|.| .+.|+++|..+..   ..........+++|.|.++..+|+|.|+|.|.|..|...
T Consensus        10 ~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~---~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   85 (94)
T d1biha1          10 AEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNW---QEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVAS   85 (94)
T ss_dssp             SEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCT---TTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeee---ecceeeecccceEEEEeccChhcCeEEEEEEEeCCCEEE
Confidence            45667889999999999999976 7999999987742   122233344567899999999999999999999999754

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=4.1e-11  Score=93.67  Aligned_cols=85  Identities=12%  Similarity=0.051  Sum_probs=55.0

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      .+..++++++.|+|++|     ............| .++|+..+...       |...  ..+......+.++|.+|+|+
T Consensus         9 ~v~~~~~~s~~v~W~~P-----~~~~~~~~~~~~y-~v~y~~~~~~~-------~~~~--~~~~~~~~~~~~~i~~L~p~   73 (101)
T d1iarb2           9 TVHTNVSDTLLLTWSNP-----YPPDNYLYNHLTY-AVNIWSENDPA-------DFRI--YNVTYLEPSLRIAASTLKSG   73 (101)
T ss_dssp             EEC----CCEEEEEECS-----SCTTSTTGGGCEE-EEEEEESSSCS-------CEEE--EEECSSCCEEEECC-----C
T ss_pred             EEEEEeCCeEEEEEccc-----cCCCCccceeeEE-EEeeeccccee-------eeee--eeeccCccceEEEECCCCCC
Confidence            78888999999999954     1111223445568 99998887654       2211  23334556688999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|.|..|.|++||
T Consensus        74 t~Y~~rVrA~~~~g~g~wSe   93 (101)
T d1iarb2          74 ISYRARVRAWAQAYNTTWSE   93 (101)
T ss_dssp             CCEEEEEEEECGGGTCCCCC
T ss_pred             CEEEEEEEEEcCCCCCCCcC
Confidence            99999999999999999986

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.4e-10  Score=92.45  Aligned_cols=94  Identities=23%  Similarity=0.434  Sum_probs=71.9

Q ss_pred             CCCCCCcEEEE--eeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCC--CCeEEEEEeeeeceEEEecCCCCCeEEEE
Q psy15127        410 PGPPAAPVILN--TTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQ--TGWVVAAHRITSTSITVSDLKPDTSYMFI  485 (633)
Q Consensus       410 p~~p~~~~~~~--~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~--~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~  485 (633)
                      ..+|..+.+..  .+..++.|+|++|...   ++++.+|.+.|+..+..  ..|...........++|.+|.|++.|.|+
T Consensus        12 ~~pP~~~~v~~~~~~~~sv~v~W~~P~~~---~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~   88 (111)
T d1x5ka1          12 TSPPKDVTVVSKEGKPKTIIVNWQPPSEA---NGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFK   88 (111)
T ss_dssp             CSCCEEEEEEECSSCTTCEEEEEECCSCC---SSCCCEEEEEEESCSSSCTTTSEEEEESTTCSEEEECSCCSSSEEEEE
T ss_pred             CCCCCCcEEEEecCCCCEEEEEEEccccC---CCceeeeEEeeeecCCCCcceeEEEEeCCCeeEEEECCCCCCCEEEEE
Confidence            34565555543  4567999999998754   57899999999876433  24555445556678999999999999999


Q ss_pred             EEEEeccccCCCCCCCCceeec
Q psy15127        486 VRAENSHGLGIPSPVSPITRTL  507 (633)
Q Consensus       486 v~a~n~~G~g~~s~~~~~~~t~  507 (633)
                      |+|.|..|.|++|... .++|.
T Consensus        89 V~A~n~~G~g~~S~~v-~~~T~  109 (111)
T d1x5ka1          89 IQARNSKGMGPMSEAV-QFRTP  109 (111)
T ss_dssp             EEEECSSCBCCCCCCE-EEECC
T ss_pred             EEEEcCCCCcCCCCCE-EEECC
Confidence            9999999999998765 45553

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=4.8e-11  Score=91.47  Aligned_cols=78  Identities=15%  Similarity=0.154  Sum_probs=62.4

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.+++.|+|++|           .+.+.+| .|.|+......       +...  ......+..++++|.||+|+
T Consensus         8 ~v~~~~~~sv~v~W~~p-----------~~~~~~y-~v~y~~~~~~~-------~~~~--~~~~~~~~~~~~~i~~L~p~   66 (92)
T d1tdqa2           8 RVGSRTATSLDLEWDNS-----------EAEAQEY-KVVYSTLAGEQ-------YHEV--LVPKGIGPTTKTTLTDLVPG   66 (92)
T ss_dssp             EEEEECSSCEEEEEECC-----------SSCCSEE-EEEEEETTCCC-------CEEE--EEECCSSSEEEEEECSCCTT
T ss_pred             EEEEecCCEEEEEEEec-----------CCcccce-EEEEEEcCCCc-------ceee--EEEecCCCeeEEEECCccCC
Confidence            78889999999999943           3578999 99999876544       1111  12224556789999999999


Q ss_pred             eeEEEEEeccccccccccC
Q psy15127        614 TKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s  632 (633)
                      +.|.|+|+|.|..|+|+|+
T Consensus        67 t~Y~~~V~a~~~~g~s~p~   85 (92)
T d1tdqa2          67 TEYGVGISAVMNSKQSIPA   85 (92)
T ss_dssp             CEEEEEEEEEETTEECCCE
T ss_pred             CEEEEEEEEEeCCCEecCE
Confidence            9999999999999999986

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.15  E-value=9.8e-11  Score=88.22  Aligned_cols=75  Identities=16%  Similarity=0.216  Sum_probs=60.0

Q ss_pred             EEecCCceEEEEEEEeee-cCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCcee-EEE
Q psy15127        250 LIWNHPRVNRLSCFAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST-TVR  327 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~-p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~  327 (633)
                      ..+.+|+.++|.|.+.+. |.+.+.|+|+|..+..          ...+..|.|.+++.+|+|.|+|.|.|..|.. +..
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~----------~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~   79 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKF----------SRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKP   79 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEE----------ESSCCEEEETTCCGGGCEEEEEEEEETTEEEECCC
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEeecccccc----------cccccccccCccCHHHCCeEEEEEEeCCCCEEeee
Confidence            346789999999999765 5568999999987642          2235589999999999999999999999875 455


Q ss_pred             EEEEEEe
Q psy15127        328 AFLQVRE  334 (633)
Q Consensus       328 ~~l~v~~  334 (633)
                      +.|.|+.
T Consensus        80 v~l~V~~   86 (88)
T d2fcba2          80 VTITVQA   86 (88)
T ss_dssp             EEEEECC
T ss_pred             EEEEEeC
Confidence            6777753

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=1.1e-11  Score=100.28  Aligned_cols=83  Identities=11%  Similarity=0.063  Sum_probs=60.7

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      .+..+++++|.|+|++|       ..+++..+.+| +++|+.......   ...|..     + ..+..+.|+|.+|+|+
T Consensus        23 ~v~~vt~~sv~l~W~~P-------~~~~g~~i~~y-~i~y~~~~~~~~---~~~~~~-----~-~~~~~~~~~v~~L~p~   85 (120)
T d1wfua_          23 VVGKVTHHSIELYWDLE-------QKEKRQGPQEQ-WLRFSIEEEDPK---MHSYGV-----I-YTGYATRHVVEGLEPR   85 (120)
T ss_dssp             BCCCEETTEEEEECTTT-------SCSCCCSCGGG-CCEEEEEEECTT---TCCEEE-----E-EEESCSEEEEESCCTT
T ss_pred             EEeEecCCEEEEEEECC-------cccCcccccce-eeeeeeeccccc---ccceee-----e-ccccccEEeCCCCCCC
Confidence            56778899999999954       12344578999 888875322210   112321     1 2345788999999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|+|+|.|..|.|++|+
T Consensus        86 t~Y~frV~A~n~~G~s~~S~  105 (120)
T d1wfua_          86 TLYKFRLKVTSPSGEYEYSP  105 (120)
T ss_dssp             CEEEEEEEEECSSSCEEECC
T ss_pred             cEeeEEEEEEeCCcEeCCCC
Confidence            99999999999999999985

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=8.2e-11  Score=89.49  Aligned_cols=75  Identities=17%  Similarity=0.238  Sum_probs=62.6

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.+++.|+|.+|           .+.+.+| .|.|+..+...       |.     ........+.++|.+|+||
T Consensus         9 ~v~~~~~~si~v~W~~p-----------~~~~~~Y-~i~~~~~~~~~-------~~-----~~~~~~~~~~~~i~~L~p~   64 (90)
T d1fnha2           9 RVTDATETTITISWRTK-----------TETITGF-QVDAVPANGQT-------PI-----QRTIKPDVRSYTITGLQPG   64 (90)
T ss_dssp             EEEEECSSEEEEEEECC-----------SSCCCCE-EEEEEESSSSC-------CE-----EEECCTTCSEEEEESCCTT
T ss_pred             EEEEecCCEEEEEEECC-----------CCCCcee-EEEEEEccCCc-------eE-----EEecCCCccEEEeCCCCCC
Confidence            78899999999999943           3678999 99999876543       22     3335567899999999999


Q ss_pred             eeEEEEEeccccccccccC
Q psy15127        614 TKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s  632 (633)
                      +.|.|+|+|.|..|+|+|.
T Consensus        65 t~Y~~~V~a~~~~g~s~p~   83 (90)
T d1fnha2          65 TDYKIYLYTLNDNARSSPV   83 (90)
T ss_dssp             CEEEEEEEEEETTEECCCE
T ss_pred             cEEEEEEEEEeCCCCcCCE
Confidence            9999999999999999873

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=5.8e-11  Score=91.02  Aligned_cols=78  Identities=15%  Similarity=0.133  Sum_probs=60.3

Q ss_pred             eeeecccc-eEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeecccc
Q psy15127        534 ELIPTAST-AVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRK  612 (633)
Q Consensus       534 ~~~~~~~~-si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~  612 (633)
                      ++..+.++ ++.|+|++|          .++.+++| +|.|+..+...       |.   ...+...+..++++|.||+|
T Consensus         9 ~v~~~~~ts~i~v~W~~p----------~~~~i~~Y-~v~y~~~~~~~-------~~---~~~~~~~~~~~~~~i~~L~p   67 (94)
T d1fnfa1           9 HLEANPDTGVLTVSWERS----------TTPDITGY-RITTTPTNGQQ-------GN---SLEEVVHADQSSCTFDNLSP   67 (94)
T ss_dssp             EEEECSSSSCEEEEEECC----------SCSSCCEE-EEEEEETTTCS-------SC---CEEEEECTTCCEEECCCCCT
T ss_pred             EEEEecCCCEEEEEeeCC----------CCCCeeEE-EEEEEEecccC-------ce---EEEEEeCCCccEEEECCCCC
Confidence            67777655 599999943          23458999 99999876543       11   12334556789999999999


Q ss_pred             ceeEEEEEeccccccccccC
Q psy15127        613 FTKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       613 ~t~Y~~~v~a~n~~g~g~~s  632 (633)
                      |+.|.|+|.|.|..|+|.|.
T Consensus        68 ~t~Y~v~V~a~~~~g~s~p~   87 (94)
T d1fnfa1          68 GLEYNVSVYTVKDDKESVPI   87 (94)
T ss_dssp             TSCEEEEEEEEETTEECCCE
T ss_pred             CCEEEEEEEEEcCCCEeCCE
Confidence            99999999999999999773

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.15  E-value=4.7e-11  Score=90.24  Aligned_cols=74  Identities=14%  Similarity=0.080  Sum_probs=61.7

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.+++.|+|++|           .+.+.+| .|.|+..+...             ..+.+....+.++|.||+|+
T Consensus         7 ~v~~~t~~sv~v~W~~p-----------~~~~~~Y-~v~~~~~~~~~-------------~~~~~~~~~~~~~~~~L~p~   61 (87)
T d1qr4a1           7 EVSDPTETTLSLRWRRP-----------VAKFDRY-RLTYVSPSGKK-------------NEMEIPVDSTSFILRGLDAG   61 (87)
T ss_dssp             EEESCCSSEEEEEEECC-----------SSCCSEE-EEEEECTTCCE-------------EEEEECTTCSEEEEESCCSS
T ss_pred             EEEEecCCEEEEEEECC-----------CCCccee-EEEeecCCcce-------------eEEeCCCCcCEEEECCCCcC
Confidence            78889999999999943           2568999 99998765432             12335567899999999999


Q ss_pred             eeEEEEEeccccccccccC
Q psy15127        614 TKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s  632 (633)
                      +.|.|+|.|+|..|+|+|+
T Consensus        62 t~Y~v~V~a~~~~~~s~~~   80 (87)
T d1qr4a1          62 TEYTISLVAEKGRHKSKPT   80 (87)
T ss_dssp             CEEEEEEEEESSSCBCCCE
T ss_pred             CEEEEEEEEEcCCCCccCE
Confidence            9999999999999999985

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=5.1e-11  Score=94.22  Aligned_cols=93  Identities=29%  Similarity=0.313  Sum_probs=71.0

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEE--EeeeeceEEEecCCCCCeEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAA--HRITSTSITVSDLKPDTSYMFIV  486 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~~~i~~L~p~~~Y~~~v  486 (633)
                      .+.||..+.. ....+++.|+|.+|...   ++++.+|.|+|+..+  ..|....  .....+.++|.+|.+++.|.|+|
T Consensus         7 ~~sPP~~~~~-~~t~~si~l~W~pp~~~---~~~i~~Y~v~~~~~~--~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV   80 (108)
T d1v5ja_           7 GLSPPRGLVA-VRTPRGVLLHWDPPELV---PKRLDGYVLEGRQGS--QGWEVLDPAVAGTETELLVPGLIKDVLYEFRL   80 (108)
T ss_dssp             CCCCCEEEEE-EECSSSEEEEEECCSCC---SSCCCBEEEEEEETT--CCCEEEEEEECSSCCEEECCCCCTTSCEECCB
T ss_pred             CCCcCCCeEE-EEcCCEEEEEEEecccC---CCceeEEEEEeeeee--eeeeeccccccceeeeEEEEeccCCcEEEEEE
Confidence            3456777755 45778999999998754   578999999999765  3444333  23356789999999999999999


Q ss_pred             EEEeccccCCCCCCCCceeecC
Q psy15127        487 RAENSHGLGIPSPVSPITRTLG  508 (633)
Q Consensus       487 ~a~n~~G~g~~s~~~~~~~t~~  508 (633)
                      +|.|..|.|++|.... ++|.+
T Consensus        81 ~A~n~~g~s~~S~~~~-~~T~~  101 (108)
T d1v5ja_          81 VAFAGSFVSDPSNTAN-VSTSG  101 (108)
T ss_dssp             EEEETTEEEEECSCCC-CCCSS
T ss_pred             EEEeCCCEeCCcCceE-EECCC
Confidence            9999999999987763 44533

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.14  E-value=4.6e-12  Score=96.05  Aligned_cols=82  Identities=16%  Similarity=0.178  Sum_probs=64.7

Q ss_pred             eeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEcc---cceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127         73 FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILD---DRSLQIENVGPQDEGLYICDVENLVGS  148 (633)
Q Consensus        73 ~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n~~g~  148 (633)
                      .|...+.++.+.+|+++.|.|.+ +.|.|.+.|+|||..+..+ +..+..   ...|.|.+++.+|+|.|+|.|.|..+ 
T Consensus         3 ~i~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~-   80 (89)
T d1tiua_           3 EVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKS-   80 (89)
T ss_dssp             CCSBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBC-
T ss_pred             EEEcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEE-
Confidence            35567789999999999999998 5788999999999998654 333333   24799999999999999999876543 


Q ss_pred             EEEEEEEEEEe
Q psy15127        149 ISLRASLTVHL  159 (633)
Q Consensus       149 ~s~~~~l~V~~  159 (633)
                         ++.|.|.+
T Consensus        81 ---sa~l~V~e   88 (89)
T d1tiua_          81 ---AANLKVKE   88 (89)
T ss_dssp             ---CEEEEEEC
T ss_pred             ---EEEEEEEE
Confidence               45666653

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=6.9e-13  Score=103.94  Aligned_cols=81  Identities=11%  Similarity=0.019  Sum_probs=63.8

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.++|.|+|++|        ...+|.|.+| .|+|+..+...       |...  ...........+++.+|+++
T Consensus        12 ~~~~~~~~sv~l~W~pP--------~~~ng~i~~Y-~v~y~~~~~~~-------~~~~--~~~~~~~~~~~~~~~~L~~~   73 (102)
T d2dtge1          12 THEIFENNVVHLMWQEP--------KEPNGLIVLY-EVSYRRYGDEE-------LHLC--DTRKHFALERGCRLRGLSPG   73 (102)
T ss_dssp             CCCSSSSSCCCCCCCCC--------CSCSSCEEEE-CCCCBSSSBCC-------CCCC--CCSSSCCCTTCCCCCSCCSS
T ss_pred             EEEEECCCEEEEEEEeC--------CCCcceEEEe-eeEEEecCCCC-------ceee--eeeecccceEEEEEecccee
Confidence            67888999999999965        5678999999 99998776543       1111  11223345778999999998


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      + |.|+|+|.|..|.|++|+
T Consensus        74 t-Y~~rV~A~n~~G~g~~S~   92 (102)
T d2dtge1          74 N-YSVRIRATSLAGNGSWTE   92 (102)
T ss_dssp             E-ECCCCCEEETTBCCCCCC
T ss_pred             e-EEEEEEEEcCCccCCCCC
Confidence            5 999999999999999986

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.3e-10  Score=91.12  Aligned_cols=80  Identities=14%  Similarity=0.119  Sum_probs=60.8

Q ss_pred             ceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEcc---CceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127        256 RVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ---EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       256 ~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      ....|.|.+.|+|.|.+.|+++|..+..... .........   .+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus        18 ~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V   96 (105)
T d1wwca_          18 LEHCIEFVVRGNPPPTLHWLHNGQPLRESKI-IHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF   96 (105)
T ss_dssp             CEEEEEEEEECSSCCEEEEEETTEECCCSSS-EEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEEEEEEeCCCeEEEEeCccccCCCcc-eeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEEE
Confidence            4456888999999999999999998742111 001111111   236999999999999999999999999999999988


Q ss_pred             Eecc
Q psy15127        333 REFC  336 (633)
Q Consensus       333 ~~~~  336 (633)
                      .+.|
T Consensus        97 ~~~P  100 (105)
T d1wwca_          97 LKEP  100 (105)
T ss_dssp             SCCC
T ss_pred             EeCC
Confidence            7543

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=3e-11  Score=91.87  Aligned_cols=79  Identities=18%  Similarity=0.302  Sum_probs=63.8

Q ss_pred             eEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127        249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  328 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  328 (633)
                      ...+.+|+++.|.|.+.| |+|.+.|+++|..+..    ...+.....++.|.|.++..+|+|.|+|.|.|..|..+...
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~----~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~   80 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKA----ESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQ   80 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCC----CSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEE
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCccccee----eeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEE
Confidence            356789999999999998 7789999999987742    22344555677899999999999999999999998776555


Q ss_pred             EEEE
Q psy15127        329 FLQV  332 (633)
Q Consensus       329 ~l~v  332 (633)
                      .+.+
T Consensus        81 ~l~~   84 (92)
T d1olza1          81 VVAK   84 (92)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5444

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=6.3e-11  Score=90.00  Aligned_cols=76  Identities=14%  Similarity=0.121  Sum_probs=62.4

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.+++.|+|++|           .+.+.+| +|.|+..+...       |.    ..+......++++|.+|+|+
T Consensus         8 ~v~~vt~~sv~l~W~~p-----------~~~~~~Y-~i~~~~~~~~~-------~~----~~~~v~~~~~~~~i~~L~p~   64 (89)
T d1fnfa3           8 DFSDITANSFTVHWIAP-----------RATITGY-RIRHHPEHFSG-------RP----REDRVPHSRNSITLTNLTPG   64 (89)
T ss_dssp             EEESCCSSEEEEEEECC-----------SSCCSEE-EEEEECSCCSS-------CC----EEEEEETTCCEEEEESCCTT
T ss_pred             EEEEecCCEEEEEEEeC-----------CCEEeeE-EEEEEECCCCC-------ce----EEEEECCCccEEEECCCccc
Confidence            78899999999999943           2568999 99998776554       22    12334567899999999999


Q ss_pred             eeEEEEEeccccccccccC
Q psy15127        614 TKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s  632 (633)
                      +.|.|+|+|.|..|+|+|.
T Consensus        65 t~Y~~~V~a~~~~g~s~p~   83 (89)
T d1fnfa3          65 TEYVVSIVALNGREESPLL   83 (89)
T ss_dssp             CEEEEEEEEEETTEECCCE
T ss_pred             CEEEEEEEEEcCCcCcCCE
Confidence            9999999999999999883

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=7.1e-11  Score=89.93  Aligned_cols=76  Identities=17%  Similarity=0.136  Sum_probs=62.6

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.+++.|+|++|           .+.+.+| .|.|+..+...       |.    ..+...++.++++|.||+|+
T Consensus         9 ~v~~~s~~s~~l~W~~p-----------~~~~~~y-~v~~~~~~~~~-------~~----~~~~~~~~~~~~~i~~L~p~   65 (90)
T d1tena_           9 EVKDVTDTTALITWFKP-----------LAEIDGI-ELTYGIKDVPG-------DR----TTIDLTEDENQYSIGNLKPD   65 (90)
T ss_dssp             EEESCCSSCEEEEEECC-----------SSCCSEE-EEEEEETTCTT-------CC----EEEEEETTCCEEEECSCCTT
T ss_pred             EEEEecCCEEEEEEEeC-----------ceEeccE-EEEEEEcCCCc-------ee----EEEEecCCcceeeEeeecCC
Confidence            78899999999999943           3678999 99998876543       11    12334567899999999999


Q ss_pred             eeEEEEEeccccccccccC
Q psy15127        614 TKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s  632 (633)
                      +.|.|+|.|.|..|+|+|+
T Consensus        66 t~Y~~~V~a~~~~g~s~~~   84 (90)
T d1tena_          66 TEYEVSLISRRGDMSSNPA   84 (90)
T ss_dssp             CEEEEEEEEEETTEECCCE
T ss_pred             CEEEEEEEEEeCCCEeCCE
Confidence            9999999999999999885

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.6e-11  Score=96.67  Aligned_cols=99  Identities=17%  Similarity=0.313  Sum_probs=70.0

Q ss_pred             cccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEEeeeEEEEeecCCCCCCcc
Q psy15127        162 DDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRY  241 (633)
Q Consensus       162 p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~a~~~~~~~p~~  241 (633)
                      |.+........+.+|+.+.|.|.+..|.|.+.+.|++++..+............                          
T Consensus         3 P~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~--------------------------   56 (104)
T d1nbqa2           3 PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSN--------------------------   56 (104)
T ss_dssp             CCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTT--------------------------
T ss_pred             CcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeC--------------------------
Confidence            555555556678999999999996678999999999998876543221110000                          


Q ss_pred             cccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCC
Q psy15127        242 IGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA  321 (633)
Q Consensus       242 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  321 (633)
                                                                     .........+.|.|.++..+|.|.|+|.|.|..
T Consensus        57 -----------------------------------------------~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~   89 (104)
T d1nbqa2          57 -----------------------------------------------SSYVLNPTTGELVFDPLSASDTGEYSCEARNGY   89 (104)
T ss_dssp             -----------------------------------------------CCCCCCTTTCCEEESSCCGGGCCCEEEEEECSS
T ss_pred             -----------------------------------------------CcEEEeecccceEECCCCcccCcEEEEEEEECC
Confidence                                                           000011134579999999999999999999999


Q ss_pred             ceeEEEEEEEEE
Q psy15127        322 GSTTVRAFLQVR  333 (633)
Q Consensus       322 g~~~~~~~l~v~  333 (633)
                      |....++.++|.
T Consensus        90 G~~~~s~~v~v~  101 (104)
T d1nbqa2          90 GTPMTSNAVRME  101 (104)
T ss_dssp             SCCEECCCBCCE
T ss_pred             CceEEEEEEEEE
Confidence            998776655554

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.12  E-value=7e-11  Score=89.43  Aligned_cols=75  Identities=9%  Similarity=0.078  Sum_probs=62.7

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++++++.|+|++|           .+.+++| .|.|+..+...       |.     .+......++++|.||.|+
T Consensus         8 ~v~~v~~~s~~l~W~~~-----------~~~~~~Y-~i~~~~~~~~~-------~~-----~~~~~~~~~~~~i~~L~p~   63 (88)
T d1qr4a2           8 SFSDITENSATVSWTPP-----------RSRVDSY-RVSYVPITGGT-------PN-----VVTVDGSKTRTKLVKLVPG   63 (88)
T ss_dssp             EEESCCSSCEEEEECCC-----------SSCCSEE-EEEEEETTCCC-------CE-----EEEEETTCCEEEECSCCSS
T ss_pred             EEEEecCCEEEEEEEcc-----------cEeeceE-EEEEEeccCCc-------eE-----EEEecCCccEEEECCCCCC
Confidence            78899999999999943           3679999 99999887654       32     2223456889999999999


Q ss_pred             eeEEEEEeccccccccccC
Q psy15127        614 TKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s  632 (633)
                      +.|.|+|.|.|..|+|+|.
T Consensus        64 t~Y~~~V~a~~~~g~s~p~   82 (88)
T d1qr4a2          64 VDYNVNIISVKGFEESEPI   82 (88)
T ss_dssp             CEEEEEEEEEETTEECCCE
T ss_pred             CEEEEEEEEEeCCCCcCCE
Confidence            9999999999999999874

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=3.3e-10  Score=88.78  Aligned_cols=91  Identities=16%  Similarity=0.248  Sum_probs=73.1

Q ss_pred             CCCCCCcEEEEe--eCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEE
Q psy15127        410 PGPPAAPVILNT--TRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVR  487 (633)
Q Consensus       410 p~~p~~~~~~~~--~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~  487 (633)
                      |.+|.++.+..+  ....+.|+|++|.... .+..+..|.|+|+..+. ..|...........++|.+|.|++.|.|+|+
T Consensus         2 P~pP~~l~v~~~~~~~~~l~v~W~~P~~~~-~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVr   79 (104)
T d1n26a3           2 PDPPANITVTAVARNPRWLSVTWQDPHSWN-SSFYRLRFELRYRAERS-KTFTTWMVKDLQHHCVIHDAWSGLRHVVQLR   79 (104)
T ss_dssp             CCCCEEEEEEECTTCTTCEEEEEECCTTCC-CSSSCEEEEEEEEETTC-SCCEEEECGGGCSEEEESSCCTTCCEEEEEE
T ss_pred             CcCCCCCEEEEEecCCCEEEEEEEeeeecC-CCceeEEEEEEEeeCCC-CceeeeccccceEEEEECCCCCCCEEEEEEE
Confidence            567888777665  3568999999986532 25778999999998764 4666655555678899999999999999999


Q ss_pred             EEeccccCCCCCCCC
Q psy15127        488 AENSHGLGIPSPVSP  502 (633)
Q Consensus       488 a~n~~G~g~~s~~~~  502 (633)
                      |.|..|.|.+|.++.
T Consensus        80 a~n~~g~g~wSewS~   94 (104)
T d1n26a3          80 AQEEFGQGEWSEWSP   94 (104)
T ss_dssp             EEETTTBSCCCCCCC
T ss_pred             EEeCCCccCCcCCcC
Confidence            999999999998763

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.3e-10  Score=91.72  Aligned_cols=84  Identities=17%  Similarity=0.104  Sum_probs=63.6

Q ss_pred             eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEE-Ec---------cCceEEEcCCCCCCCe-EEEEE
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLH-VT---------QEGTLRIQGVQKEDAG-FFVCS  316 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~-~~---------~~~~l~i~~~~~~d~G-~Y~C~  316 (633)
                      ..+.+..|+.+.|.|.+.|.|.|.+.|.++|..+............ ..         ..+.|.|.+++.+|.| .|+|.
T Consensus        10 ~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~   89 (107)
T d1iray3          10 ETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCF   89 (107)
T ss_dssp             EEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEE
T ss_pred             CEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEE
Confidence            3456778999999999999999999999999876532221111111 10         1236999999999999 59999


Q ss_pred             EEeCCceeEEEEEEE
Q psy15127        317 ALSVAGSTTVRAFLQ  331 (633)
Q Consensus       317 a~n~~g~~~~~~~l~  331 (633)
                      |.|.+|..+..+.|.
T Consensus        90 A~N~~G~~~~~i~L~  104 (107)
T d1iray3          90 AKNTHGIDAAYIQLI  104 (107)
T ss_dssp             EECSSCEEEEEEEEE
T ss_pred             EEeCCCeEEEEEEEE
Confidence            999999998887765

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=6.8e-11  Score=89.03  Aligned_cols=74  Identities=14%  Similarity=0.117  Sum_probs=61.6

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.+++.|+|.+|           .+.+.+| .|+|+..+...       +      .+......++++|.||+|+
T Consensus         8 ~v~~~~~~s~~l~W~~p-----------~~~~~~Y-~v~~~~~~~~~-------~------~~~~~~~~~~~~~~~L~p~   62 (86)
T d1tdqa3           8 MVTASSETSISLIWTKA-----------SGPIDHY-RITFTPSSGIS-------S------EVTVPRDRTSYTLTDLEPG   62 (86)
T ss_dssp             EEEEECSSCEEEEEECC-----------CSCCSEE-EEEEECSSSCC-------E------EEEEESSCSEEEECCCCTT
T ss_pred             EEEEecCCEEEEEEeCC-----------CCCccce-EEEEecccccc-------e------EEEeCCCccEEEECCCccc
Confidence            78889999999999943           3678999 99998765543       1      2234467899999999999


Q ss_pred             eeEEEEEeccccccccccC
Q psy15127        614 TKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s  632 (633)
                      +.|.|+|.|.|..|+|.|+
T Consensus        63 t~Y~v~V~a~~~~~~s~p~   81 (86)
T d1tdqa3          63 AEYIISITAERGRQQSLES   81 (86)
T ss_dssp             CCEEEEEEEEETTEECCCE
T ss_pred             cEEEEEEEEEcCCCEECCE
Confidence            9999999999999999986

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=6.7e-11  Score=94.94  Aligned_cols=81  Identities=22%  Similarity=0.284  Sum_probs=62.5

Q ss_pred             eeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccce
Q psy15127        535 LIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFT  614 (633)
Q Consensus       535 ~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t  614 (633)
                      ....+.++|.|+|++|        ...++.+.+| .|+|+......       |.....  ....+..+.++|++|.+++
T Consensus        15 ~~~~~~~si~v~W~~p--------~~~~~~~~~Y-~v~y~~~~~~~-------~~~~~~--~~~~~~~~~~~i~~L~~~t   76 (115)
T d1bqua2          15 NSEELSSILKLTWTNP--------SIKSVIILKY-NIQYRTKDAST-------WSQIPP--EDTASTRSSFTVQDLKPFT   76 (115)
T ss_dssp             CC--CCSCEEEEEECC--------GGGGTSCEEE-EEEEEETTCSS-------CEECCG--GGGCSCCSEEEECSCCSSE
T ss_pred             EeccCCCEEEEEEeec--------cccccceeee-eeeeeeeeeee-------eecccc--ccccccccEEeeCCCccCc
Confidence            3456788999999965        5667899999 99999876654       333221  1134567899999999999


Q ss_pred             eEEEEEeccccccccccCC
Q psy15127        615 KYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       615 ~Y~~~v~a~n~~g~g~~s~  633 (633)
                      .|.|+|+|.|..|.|.+|+
T Consensus        77 ~Y~~~V~a~~~~G~g~~S~   95 (115)
T d1bqua2          77 EYVFRIRCMKEDGKGYWSD   95 (115)
T ss_dssp             EEEEEEEEEETTSCSCCCC
T ss_pred             EEEEEEEEEeCCCccCCcC
Confidence            9999999999999998774

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.11  E-value=3.5e-11  Score=95.07  Aligned_cols=77  Identities=19%  Similarity=0.282  Sum_probs=60.8

Q ss_pred             eEEEcCCeEEEEEEE-eccCCCeEEEEeCCccCCC--------CCeEEcccceEEEccCCCCCCe---EEEEEEEeCCce
Q psy15127         81 ATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPT--------GRAKILDDRSLQIENVGPQDEG---LYICDVENLVGS  148 (633)
Q Consensus        81 ~~~~~G~~~~L~C~~-~~~p~p~i~W~~~~~~i~~--------~~~~~~~~~~L~i~~v~~~d~G---~Y~C~~~n~~g~  148 (633)
                      ..+.+|++++|.|.+ .|.|.|.+.|+|++..+..        .+.....+++|.|.+++.+|+|   .|+|.|.|..|.
T Consensus        12 ~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~   91 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVD   91 (111)
T ss_dssp             ECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCS
T ss_pred             ccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCC
Confidence            346789999999997 8999999999998776521        2344556789999999998877   799999999998


Q ss_pred             EEEEEEEEE
Q psy15127        149 ISLRASLTV  157 (633)
Q Consensus       149 ~s~~~~l~V  157 (633)
                      ....+.+.+
T Consensus        92 ~~~~~~~~~  100 (111)
T d1biha2          92 EEVVLVEYE  100 (111)
T ss_dssp             SCEEEEEEE
T ss_pred             ceEEEEEEE
Confidence            655544433

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=4.8e-12  Score=96.91  Aligned_cols=79  Identities=16%  Similarity=0.069  Sum_probs=62.8

Q ss_pred             EEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCe-EEEEEEEeCCceeEEEE
Q psy15127        250 LIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAG-FFVCSALSVAGSTTVRA  328 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~~~~~~  328 (633)
                      ..+.+|+.+.|.|.+.|.|.|.+.|++++..+...    ...........|.|.++..+|.| .|+|.|.|..|..+.++
T Consensus        12 ~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~----~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~   87 (92)
T d2ifga1          12 ASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSAT----VMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSV   87 (92)
T ss_dssp             SCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEE----ECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEE
T ss_pred             EEEeCCCEEEEeeeccCCCCcEEEEEECCceeeee----eeeeeeccceeEEEccccccccceEEEEEEEcCCCEEEEEE
Confidence            34678999999999999999999999998765321    11122234457999999999998 69999999999998887


Q ss_pred             EEEE
Q psy15127        329 FLQV  332 (633)
Q Consensus       329 ~l~v  332 (633)
                      .|.|
T Consensus        88 ~l~V   91 (92)
T d2ifga1          88 QVNV   91 (92)
T ss_dssp             CCCC
T ss_pred             EEEE
Confidence            7654

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=1.2e-10  Score=90.91  Aligned_cols=96  Identities=20%  Similarity=0.218  Sum_probs=74.8

Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCC--CeEEEEEeeeeceEEEecCCCCCeEEEEEE
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQT--GWVVAAHRITSTSITVSDLKPDTSYMFIVR  487 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~--~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~  487 (633)
                      +.+|..+.+...+.+++.|+|+++.... .++.+.+|.|.|+..+...  .|...........++|.+|+|++.|.|+|+
T Consensus         2 ~~~P~~~~~~~~s~tsi~v~W~~~~~~~-~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~   80 (101)
T d1x4ya1           2 VAGPYITFTDAVNETTIMLKWMYIPASN-NNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQ   80 (101)
T ss_dssp             CSCCEEEEEECSSSSCEEEEEECCCTTS-CCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEEEE
T ss_pred             CCCCcccEEEEEcCCEEEEEEecCcccc-cccceEEEEEEeeeccceeeeeeeEEEEcCCeeEEEEcCCCCCCEEEEEEE
Confidence            3567788888899999999999765443 3579999999999764322  233333444567899999999999999999


Q ss_pred             EEeccccCCCCCCCCceeec
Q psy15127        488 AENSHGLGIPSPVSPITRTL  507 (633)
Q Consensus       488 a~n~~G~g~~s~~~~~~~t~  507 (633)
                      |.|..|.|++|... .++|.
T Consensus        81 a~n~~G~s~~S~~~-~~~T~   99 (101)
T d1x4ya1          81 CFNEGGESEFSNVM-ICETK   99 (101)
T ss_dssp             EECTTCCCCCCCCE-EEECC
T ss_pred             EEcCCCCCCCCCcE-EEEcc
Confidence            99999999999776 45553

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=6.1e-11  Score=93.31  Aligned_cols=77  Identities=17%  Similarity=0.196  Sum_probs=58.9

Q ss_pred             eEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc--------cCceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127        257 VNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT--------QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  328 (633)
Q Consensus       257 ~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  328 (633)
                      ...|.|.+.|+|.|.+.|+++|..+....  . ......        ..+.|.|.++..+|.|.|+|.|.|..|..+.++
T Consensus        17 ~~ci~~~v~G~P~P~v~W~~ng~~l~~~~--~-~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i   93 (107)
T d1he7a_          17 HWCIPFSVDGQPAPSLRWLFNGSVLNETS--F-IFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI   93 (107)
T ss_dssp             EEEEEEEECCSSCCEEEEEETTEECCCCS--S-EEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEEEEEecCCeEEEEEeeeEccCcc--c-eeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEE
Confidence            34456689999999999999999874211  1 111111        123599999999999999999999999999999


Q ss_pred             EEEEEecc
Q psy15127        329 FLQVREFC  336 (633)
Q Consensus       329 ~l~v~~~~  336 (633)
                      .|.|.+.|
T Consensus        94 ~v~v~~~P  101 (107)
T d1he7a_          94 MAAFMDNP  101 (107)
T ss_dssp             EECCCSCT
T ss_pred             EEEEEcCC
Confidence            99887644

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.3e-10  Score=88.60  Aligned_cols=77  Identities=14%  Similarity=0.177  Sum_probs=63.1

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.+++.|+|++|          .++.+++| .|+|+..+...       |.    ......+..++++|.||+|+
T Consensus         8 ~~~~~~~~sv~l~W~~p----------~~~~~~~y-~v~y~~~~~~~-------~~----~~~~~~~~~~~~~i~~L~p~   65 (91)
T d1fnfa2           8 RFTNIGPDTMRVTWAPP----------PSIDLTNF-LVRYSPVKNEE-------DV----AELSISPSDNAVVLTNLLPG   65 (91)
T ss_dssp             EEESCCSSCEEEEEECC----------TTCCCSEE-EEEEEETTCTT-------CC----EEEEECTTCCEEEECSCCTT
T ss_pred             EEEEeCCCEEEEEEEec----------CCCCccee-EEEEEECCCCc-------cE----EEEEeCCCceEEEEeceeCC
Confidence            78889999999999943          34678999 99999876553       11    12334567899999999999


Q ss_pred             eeEEEEEeccccccccccC
Q psy15127        614 TKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s  632 (633)
                      +.|.|+|+|.|..|+|+|.
T Consensus        66 t~Y~~~V~a~~~~g~S~p~   84 (91)
T d1fnfa2          66 TEYVVSVSSVYEQHESTPL   84 (91)
T ss_dssp             CEEEEEEEEEETTEECCCE
T ss_pred             CEEEEEEEEEcCCCCCCCE
Confidence            9999999999999999873

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=6.3e-11  Score=90.04  Aligned_cols=76  Identities=14%  Similarity=0.248  Sum_probs=61.2

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.+++.|+|++|           .+.+.+| .|+|+..+...       |...    .......++++|.||.|+
T Consensus         8 ~v~~~~~~s~~l~W~~p-----------~~~i~~Y-~i~~~~~~~~~-------~~~~----~~~~~~~~~~~~~~L~p~   64 (89)
T d1fnha3           8 RFLATTPNSLLVSWQPP-----------RARITGY-IIKYEKPGSPP-------REVV----PRPRPGVTEATITGLEPG   64 (89)
T ss_dssp             EEEEEETTEEEEEEECC-----------SSCCSEE-EEEEECTTSCC-------EECT----TCCCTTCCEEEEESCCTT
T ss_pred             EEEEecCCEEEEEEeCC-----------CcCCceE-EEEEeeccCCc-------cEEE----EEcCCCccEEEEEeeeCC
Confidence            78889999999999943           3579999 99998776543       2221    113456789999999999


Q ss_pred             eeEEEEEeccccccccccC
Q psy15127        614 TKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s  632 (633)
                      +.|.|+|+|+|..|+|+|.
T Consensus        65 t~Y~~~V~a~n~~g~S~p~   83 (89)
T d1fnha3          65 TEYTIYVIALKNNQKSEPL   83 (89)
T ss_dssp             CEEEEEEEEESSSCEEEEE
T ss_pred             CEEEEEEEEEcCCCEeCCE
Confidence            9999999999999999873

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.1e-10  Score=89.52  Aligned_cols=74  Identities=14%  Similarity=0.114  Sum_probs=61.1

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      .+..++.+++.|+|++|           .+.+.+| .|.|+..+...        .     .+...+..++++|.||+|+
T Consensus         9 ~~~~~~~~sv~l~W~~p-----------~~~~~~Y-~v~~~~~~~~~--------~-----~~~~~~~~~~~~i~~L~p~   63 (93)
T d2cuma1           9 EAKEVTPRTALLTWTEP-----------PVRPAGY-LLSFHTPGGQT--------Q-----EILLPGGITSHQLLGLFPS   63 (93)
T ss_dssp             EEESCCSSCEEEEEECC-----------SSCCSEE-EEEEECTTSCE--------E-----EEEECSSCSEEEECSCCTT
T ss_pred             EEEEeCCCEEEEEEEcc-----------ccccccE-EEEEEcccccc--------E-----EEEECCCccEEEEeCccCC
Confidence            78889999999999943           3578999 99998765432        1     2334567899999999999


Q ss_pred             eeEEEEEeccccccccccC
Q psy15127        614 TKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s  632 (633)
                      +.|.|+|.|.|..|.|+|+
T Consensus        64 t~Y~~~V~a~~~~g~s~~~   82 (93)
T d2cuma1          64 TSYNARLQAMWGQSLLPPV   82 (93)
T ss_dssp             CEEEEEEEEEBTTBCCCCE
T ss_pred             CEEEEEEEEEeCCCCCCCE
Confidence            9999999999999999885

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=7e-11  Score=92.28  Aligned_cols=84  Identities=15%  Similarity=0.171  Sum_probs=64.0

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.+++.|+|++|           .+.+.+| +|.|+..........   +.......+...+...+++|.+|+|+
T Consensus        11 ~v~~~t~~sv~v~W~pp-----------~~~~~~y-~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~L~p~   75 (101)
T d2cuia1          11 SVTDVTTSSLRLNWEAP-----------PGAFDSF-LLRFGVPSPSTLEPH---PRPLLQRELMVPGTRHSAVLRDLRSG   75 (101)
T ss_dssp             EEESCCSSCEEEECCCC-----------TTSCSEE-EEEEECCCCSSSCCC---SSCCCCEEEEEETTCCEEEECSCCTT
T ss_pred             EEEEECCCEEEEEEEec-----------cccccce-EEEEEecCCCceeec---cCCcceeEeecccceeEEEeCCCCcC
Confidence            88999999999999943           3678999 999988765431111   11112223345567899999999999


Q ss_pred             eeEEEEEeccccccccccC
Q psy15127        614 TKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s  632 (633)
                      +.|.|+|+|.|..|.|+++
T Consensus        76 t~Y~~~V~a~~~~g~g~~~   94 (101)
T d2cuia1          76 TLYSLTLYGLRGPHKADSI   94 (101)
T ss_dssp             CEEEEEEEEECSSSEEEEE
T ss_pred             CEEEEEEEEEeCCcEeCCe
Confidence            9999999999999999885

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.7e-10  Score=87.56  Aligned_cols=82  Identities=20%  Similarity=0.182  Sum_probs=59.5

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEE
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV  326 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  326 (633)
                      .....+..|+++.|.|.+ +.|.+.+.|+++|..+..................|.|.++..+|+|.|+|.|.|    ...
T Consensus         7 l~~~~v~~G~~v~l~C~v-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~   81 (90)
T d1x44a1           7 LEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----GQS   81 (90)
T ss_dssp             CCCEEEETTEEEEEEEEC-SSSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----EEE
T ss_pred             CCCEEEeCCCcEEEEEEE-CCCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec----ceE
Confidence            345667889999999998 568899999999998753322111111112234799999999999999999966    445


Q ss_pred             EEEEEEE
Q psy15127        327 RAFLQVR  333 (633)
Q Consensus       327 ~~~l~v~  333 (633)
                      ++.|.|.
T Consensus        82 ~a~l~V~   88 (90)
T d1x44a1          82 SAKLSVD   88 (90)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5666665

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=1e-10  Score=90.14  Aligned_cols=80  Identities=15%  Similarity=0.210  Sum_probs=62.2

Q ss_pred             EEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeE-EEE
Q psy15127        250 LIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT-VRA  328 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~  328 (633)
                      ..+.+|++++|.|.+.+ +++.+.|+++|..+...    .........+.|.|.++..+|.|.|+|.|.|..|... ..+
T Consensus        13 ~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~----~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~   87 (96)
T d1l6za2          13 TTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLT----ERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSI   87 (96)
T ss_dssp             SEECTTSCEEEEECCCC-SSCEEEEEETTEECCCC----TTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCC
T ss_pred             eEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccc----cceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeE
Confidence            44678999999999866 66899999999987421    1222234556899999999999999999999999764 457


Q ss_pred             EEEEEe
Q psy15127        329 FLQVRE  334 (633)
Q Consensus       329 ~l~v~~  334 (633)
                      .|.|..
T Consensus        88 ~L~V~~   93 (96)
T d1l6za2          88 KLDIIF   93 (96)
T ss_dssp             EEEECC
T ss_pred             EEEEEc
Confidence            777754

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.2e-10  Score=88.76  Aligned_cols=76  Identities=18%  Similarity=0.156  Sum_probs=62.3

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      .+..++.+++.|+|++|           .+.+.+| .++|+......       |.    ..+......++|+|.||.|+
T Consensus         7 ~~~~v~~~si~l~W~~p-----------~~~~~~~-~i~~~~~~~~~-------~~----~~~~~~~~~~~~~i~~L~p~   63 (90)
T d1fnha1           7 KFTQVTPTSLSAQWTPP-----------NVQLTGY-RVRVTPKEKTG-------PM----KEINLAPDSSSVVVSGLMVA   63 (90)
T ss_dssp             EEEEECSSCEEEEEECC-----------SSCCSEE-EEEEEESSSCS-------CC----CEEEECTTCCEEEECSCCTT
T ss_pred             EEEEecCCEEEEEEEcc-----------ceeccce-EEEEEeeeCCC-------ce----EEEEeCCCCeEEEEecccCc
Confidence            78999999999999943           3678899 99998876654       11    12234466889999999999


Q ss_pred             eeEEEEEeccccccccccC
Q psy15127        614 TKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s  632 (633)
                      +.|.|+|+|.|..|+|+++
T Consensus        64 t~Y~~~V~a~n~~g~s~~~   82 (90)
T d1fnha1          64 TKYEVSVYALKDTLTSRPA   82 (90)
T ss_dssp             CEEEEEEEEEETTEECCCE
T ss_pred             eEEEEEEEEEeCCCCcCCE
Confidence            9999999999999999986

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.1e-10  Score=87.04  Aligned_cols=81  Identities=22%  Similarity=0.287  Sum_probs=67.0

Q ss_pred             CCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEec
Q psy15127        412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENS  491 (633)
Q Consensus       412 ~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~  491 (633)
                      +|.++.+..++.+++.|+|++|.      +.+.+|.|+|+..+..............+.++|.+|.|++.|.|+|+|.|.
T Consensus         3 ~P~~l~v~~vt~~sv~l~W~~p~------~~~~~Y~i~~~~~~~~~~~~~~~v~~~~~~~~i~~L~p~t~Y~~~V~a~~~   76 (89)
T d1fnfa3           3 SPTGIDFSDITANSFTVHWIAPR------ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNG   76 (89)
T ss_dssp             CCEEEEEESCCSSEEEEEEECCS------SCCSEEEEEEECSCCSSCCEEEEEETTCCEEEEESCCTTCEEEEEEEEEET
T ss_pred             cCcCCEEEEecCCEEEEEEEeCC------CEEeeEEEEEEECCCCCceEEEEECCCccEEEECCCcccCEEEEEEEEEcC
Confidence            57788888999999999999885      468899999998765444444444556789999999999999999999999


Q ss_pred             cccCCCC
Q psy15127        492 HGLGIPS  498 (633)
Q Consensus       492 ~G~g~~s  498 (633)
                      .|.|++.
T Consensus        77 ~g~s~p~   83 (89)
T d1fnfa3          77 REESPLL   83 (89)
T ss_dssp             TEECCCE
T ss_pred             CcCcCCE
Confidence            9998753

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=9.5e-11  Score=91.61  Aligned_cols=74  Identities=7%  Similarity=0.029  Sum_probs=60.7

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.+++.|+|++|           .+.+.+| .|.|+..+...       |      .+...+..++++|.||+|+
T Consensus         8 ~~~~~t~~si~l~W~~p-----------~~~i~~Y-~v~~~~~~~~~-------~------~~~~~~~~~~~~l~~L~p~   62 (102)
T d2cuha1           8 RALNLTEGFAVLHWKPP-----------QNPVDTY-DIQVTAPGAPP-------L------QAETPGSAVDYPLHDLVLH   62 (102)
T ss_dssp             ECCCCSSSCEEEEEECC-----------SSCCSEE-EEEEECSSSCC-------E------EEEEETTCSEEEECSCCSS
T ss_pred             EEEEeCCCEEEEEEEee-----------eccceee-EEEEEeccccc-------e------eeeeeeeeeeEEEccEEee
Confidence            78899999999999943           3578999 99998655432       2      2234567889999999999


Q ss_pred             eeEEEEEeccccccccccC
Q psy15127        614 TKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s  632 (633)
                      +.|.|+|+|.|..|.|+++
T Consensus        63 t~Y~~~V~a~~~~~~s~~~   81 (102)
T d2cuha1          63 TNYTATVRGLRGPNLTSPA   81 (102)
T ss_dssp             SEEEEEEEEEETTEECCCE
T ss_pred             EEEEEEEEEEeCCCCcCCE
Confidence            9999999999999999874

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.9e-10  Score=87.42  Aligned_cols=82  Identities=18%  Similarity=0.284  Sum_probs=69.3

Q ss_pred             CCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEe
Q psy15127        411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAEN  490 (633)
Q Consensus       411 ~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n  490 (633)
                      .+|.++.+..++.+++.|+|++|.      +.+.+|.|.|+..+....+.........+.++|.+|.|++.|.|+|.|.|
T Consensus         3 d~P~~l~v~~~s~~s~~l~W~~p~------~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~   76 (90)
T d1tena_           3 DAPSQIEVKDVTDTTALITWFKPL------AEIDGIELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRR   76 (90)
T ss_dssp             CCCEEEEEESCCSSCEEEEEECCS------SCCSEEEEEEEETTCTTCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEE
T ss_pred             CCCCCcEEEEecCCEEEEEEEeCc------eEeccEEEEEEEcCCCceeEEEEecCCcceeeEeeecCCCEEEEEEEEEe
Confidence            467888888899999999999875      46889999999876655555555555678999999999999999999999


Q ss_pred             ccccCCCC
Q psy15127        491 SHGLGIPS  498 (633)
Q Consensus       491 ~~G~g~~s  498 (633)
                      ..|.|.++
T Consensus        77 ~~g~s~~~   84 (90)
T d1tena_          77 GDMSSNPA   84 (90)
T ss_dssp             TTEECCCE
T ss_pred             CCCEeCCE
Confidence            99998764

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2e-10  Score=89.38  Aligned_cols=96  Identities=19%  Similarity=0.184  Sum_probs=73.1

Q ss_pred             CCCCCcEEEEeeCCeEEEEeCCCCCC-CCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEE
Q psy15127        411 GPPAAPVILNTTRGSVTLGWGEPEPR-GGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAE  489 (633)
Q Consensus       411 ~~p~~~~~~~~~~~~i~l~W~~~~~~-~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~  489 (633)
                      .+|..+.+...+.+++.|+|++|... ......+..|.++|+..+....+. .........++|.||.|++.|.|+|+|.
T Consensus         3 ~pP~~v~~~~~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   81 (100)
T d1x5ja1           3 MPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKY-KNANATTLSYLVTGLKPNTLYEFSVMVT   81 (100)
T ss_dssp             CCCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCCC-EECCBCSSEEEEESCCTTCEECCEEEEE
T ss_pred             CCCcCeEEEEecCCEEEEEEcCCccccccceeeEEEEEEEeeecCCCccee-EecCCCccEEEECCCCCCCEEEEEEEEE
Confidence            45778888999999999999987432 222356778999988765443322 2233456789999999999999999999


Q ss_pred             eccccCCCCCCCCceeecC
Q psy15127        490 NSHGLGIPSPVSPITRTLG  508 (633)
Q Consensus       490 n~~G~g~~s~~~~~~~t~~  508 (633)
                      |..|.|++|... .++|.+
T Consensus        82 n~~g~s~~S~~~-~~~T~e   99 (100)
T d1x5ja1          82 KGRRSSTWSMTA-HGTTFE   99 (100)
T ss_dssp             CSSCBCCCCCCC-CEECCC
T ss_pred             eCCcCcCCCCeE-EEEecc
Confidence            999999999887 466643

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=7.3e-12  Score=100.73  Aligned_cols=92  Identities=21%  Similarity=0.277  Sum_probs=72.5

Q ss_pred             cCcCCeeeeCCCceEEEcCCeEEEEEEEecc-CCCeEEEEeCCccCCCC---CeEEcc-------cceEEEccCCCCC-C
Q psy15127         68 ALIKPFPISEPSDATVLSGSVVEFVCRVGGD-PLPTILWRRDDGKMPTG---RAKILD-------DRSLQIENVGPQD-E  135 (633)
Q Consensus        68 v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~-p~p~i~W~~~~~~i~~~---~~~~~~-------~~~L~i~~v~~~d-~  135 (633)
                      |..||.|. .+..+.+.+|+.+.|.|.+.+. |.+.+.|++++..+..+   +.....       ...|.|.+++.+| +
T Consensus         4 V~~Pp~i~-~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~   82 (115)
T d2crya1           4 VNGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQ   82 (115)
T ss_dssp             CCSSCCEE-EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHH
T ss_pred             EecCCEEe-cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCC
Confidence            44567665 4567778999999999999885 55689999999887542   222211       1369999999999 7


Q ss_pred             eEEEEEEEeCCceEEEEEEEEEEee
Q psy15127        136 GLYICDVENLVGSISLRASLTVHLL  160 (633)
Q Consensus       136 G~Y~C~~~n~~g~~s~~~~l~V~~~  160 (633)
                      |.|+|.|.|..|..++.+.|.|...
T Consensus        83 G~Y~C~A~N~~G~~~~~~~L~V~~~  107 (115)
T d2crya1          83 TIYNCTAWNSFGSDTEIIRLKEQGS  107 (115)
T ss_dssp             SCEEEEEECSSCEEEEEECCCCSCS
T ss_pred             eEEEEEEEECCCeEEEEEEEEEECC
Confidence            9999999999999999999988754

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=4.9e-10  Score=91.33  Aligned_cols=103  Identities=17%  Similarity=0.192  Sum_probs=77.5

Q ss_pred             CCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCC-------eEEEEEeeeeceEEEecCCCCC
Q psy15127        408 LFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTG-------WVVAAHRITSTSITVSDLKPDT  480 (633)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~-------~~~~~~~~~~~~~~i~~L~p~~  480 (633)
                      .++.+|..+.+...+.+++.|+|+++..... ++.+..|.+.++.......       ............++|.+|.|++
T Consensus        13 ~P~~~P~~v~v~~~~~~si~l~W~~p~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t   91 (125)
T d1uena_          13 LPMVAPGNVRVNVVNSTLAEVHWDPVPLKSI-RGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPFS   91 (125)
T ss_dssp             CCCCCCSSCEEEEEETTEEEEECCCCCHHHH-CSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEEESCCSSC
T ss_pred             CCCCCCcccEEEEecCCEEEEEEeCccCCCC-CcceeeEEeEEEeecCCccceeecccceEEEeCCCccEEEECCCCCCC
Confidence            3456788999999999999999999864321 4678899998886543211       1222233345789999999999


Q ss_pred             eEEEEEEEEeccccCCCCCCCCceeecCCCCC
Q psy15127        481 SYMFIVRAENSHGLGIPSPVSPITRTLGLNSL  512 (633)
Q Consensus       481 ~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~~p~  512 (633)
                      .|.|+|+|.|..|.|++|... .++|.+..|.
T Consensus        92 ~Y~~~V~A~n~~G~g~~S~~~-~~~T~~~~pp  122 (125)
T d1uena_          92 HYTLNVRVVNGKGEGPASPDR-VFNTPEGSGP  122 (125)
T ss_dssp             EEEEEEEEEESSCEEEECCCE-EEECCCCCSS
T ss_pred             EEEEEEEEEeCCcccCCCCCE-EEECCCCCcC
Confidence            999999999999999999877 5777665543

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.9e-10  Score=87.58  Aligned_cols=83  Identities=22%  Similarity=0.221  Sum_probs=68.7

Q ss_pred             CCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEec
Q psy15127        412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENS  491 (633)
Q Consensus       412 ~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~  491 (633)
                      +|..+.+..++.+++.|+|+++.      ..+.+|.++|+.......+.........+.++|.+|.|++.|.|+|+|.|.
T Consensus         2 pP~~l~~~~v~~~si~l~W~~p~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~   75 (90)
T d1fnha1           2 APTDLKFTQVTPTSLSAQWTPPN------VQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKD   75 (90)
T ss_dssp             CCEEEEEEEECSSCEEEEEECCS------SCCSEEEEEEEESSSCSCCCEEEECTTCCEEEECSCCTTCEEEEEEEEEET
T ss_pred             CCCCEEEEEecCCEEEEEEEccc------eeccceEEEEEeeeCCCceEEEEeCCCCeEEEEecccCceEEEEEEEEEeC
Confidence            47788899999999999999985      357789999887765555554445556789999999999999999999999


Q ss_pred             cccCCCCCC
Q psy15127        492 HGLGIPSPV  500 (633)
Q Consensus       492 ~G~g~~s~~  500 (633)
                      .|.|.++..
T Consensus        76 ~g~s~~~~~   84 (90)
T d1fnha1          76 TLTSRPAQG   84 (90)
T ss_dssp             TEECCCEEE
T ss_pred             CCCcCCEeE
Confidence            999987643

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.4e-10  Score=88.49  Aligned_cols=76  Identities=12%  Similarity=0.124  Sum_probs=62.4

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++++++.|+|++|           .+.+++| .|+|+..+...       |.    ......+..++++|.||+|+
T Consensus         4 ~v~~~t~~sv~l~W~~p-----------~~~~~~Y-~v~~~~~~~~~-------~~----~~~~~~~~~t~~~l~~L~p~   60 (91)
T d1fnaa_           4 EVVAATPTSLLISWDAP-----------AVTVRYY-RITYGETGGNS-------PV----QEFTVPGSKSTATISGLKPG   60 (91)
T ss_dssp             EEEEECSSCEEEECCCC-----------SSCCSEE-EEEEEETTCCS-------CC----EEEEEETTCCEEEECSCCTT
T ss_pred             EEEEeCCCEEEEEEEcc-----------ceEecEE-EEEEEcCCCCc-------ee----EEEEeCCCccEEEeCCCCCC
Confidence            78889999999999943           2568999 99999876544       21    12334567899999999999


Q ss_pred             eeEEEEEeccccccccccC
Q psy15127        614 TKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s  632 (633)
                      +.|.|+|.|.|..|+|+++
T Consensus        61 t~Y~~~V~a~~~~g~s~~~   79 (91)
T d1fnaa_          61 VDYTITVYAVTGRGDSPAS   79 (91)
T ss_dssp             CEEEEEEEEECTTCCSSCS
T ss_pred             CEEEEEEEEEeCCccCCCc
Confidence            9999999999999999886

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.2e-11  Score=95.09  Aligned_cols=87  Identities=15%  Similarity=0.218  Sum_probs=64.7

Q ss_pred             cceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccC-------CccceEEEccCceEEEcCCCCCCCeEEEEEEE
Q psy15127        246 MASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPG-------NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  318 (633)
Q Consensus       246 ~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~-------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  318 (633)
                      ....+.+.+|+++.|.|.+.|.|.|.+.|++++..+.....       ....+. ...+++|.|.++..+|+|.|+|.|.
T Consensus        10 ~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~   88 (105)
T d1nbqa1          10 SEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV-TFLPTGITFKSVTREDTGTYTCMVS   88 (105)
T ss_dssp             SCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTC-EEETTEEECSCCCTTSCSEEEEEEE
T ss_pred             CCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeecccccee-eecCceEEEecccccceeeEEEEEE
Confidence            34455677899999999999999999999997654332111       000111 1134579999999999999999999


Q ss_pred             eCCceeEEEEEEEEE
Q psy15127        319 SVAGSTTVRAFLQVR  333 (633)
Q Consensus       319 n~~g~~~~~~~l~v~  333 (633)
                      |..|.....+.|.|.
T Consensus        89 n~~G~~~~~~~v~v~  103 (105)
T d1nbqa1          89 EEGGNSYGEVKVKLI  103 (105)
T ss_dssp             ETTSSCEECCEEECC
T ss_pred             ECCCCEEEEEEEEEE
Confidence            999999877777654

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.6e-10  Score=87.19  Aligned_cols=76  Identities=13%  Similarity=0.104  Sum_probs=60.1

Q ss_pred             EEecCCceEEEEEEEeeecC-CeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCcee-EEE
Q psy15127        250 LIWNHPRVNRLSCFAEGSPL-PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST-TVR  327 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~p~-~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~  327 (633)
                      ..+.+|+.++|.|.+.+.++ ..+.|+|||..+..          ......|.|.+++.+|+|.|.|.|.|..|.. +..
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~----------~~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~   79 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKY----------WYENHNISITNATVEDSGTYYCTGKVWQLDYESEP   79 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCS----------CCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred             CeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccc----------ccccceEEEeeeeeecCcEEEEEEEeCCCCeEeee
Confidence            34678999999999977654 59999999987631          1134579999999999999999999988765 456


Q ss_pred             EEEEEEec
Q psy15127        328 AFLQVREF  335 (633)
Q Consensus       328 ~~l~v~~~  335 (633)
                      +.|.|...
T Consensus        80 v~i~V~~~   87 (89)
T d1f2qa2          80 LNITVIKA   87 (89)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEEeC
Confidence            77777753

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=5.9e-10  Score=92.35  Aligned_cols=104  Identities=28%  Similarity=0.336  Sum_probs=79.2

Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCC------CCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEE
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGG------GVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYM  483 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~------~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~  483 (633)
                      +..+..+.+..+..+++.|+|.+|.....      ....+..|.+.++..+....|... .......++|.+|.|++.|.
T Consensus        18 ~~~~~~P~V~~v~~~sv~l~W~~P~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~-~~~~~~~~~i~~L~P~t~Y~   96 (137)
T d1wk0a_          18 LSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSV-YVGEETNITLNDLKPAMDYH   96 (137)
T ss_dssp             TTCCCCCEEESCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTTSCCEEE-EEESCSEEEECSCCTTCEEC
T ss_pred             CCCCCCCEEEEeEcCEEEEEEeCcCcCCCceeeccccceEEeeEEEEeeCCCCccEEEE-EecCccEEEECCCCCCcEEE
Confidence            44566678888899999999999875320      012467899988876654555533 34457789999999999999


Q ss_pred             EEEEEEeccccCCCCCCCCceeecCCCCCCCc
Q psy15127        484 FIVRAENSHGLGIPSPVSPITRTLGLNSLVPQ  515 (633)
Q Consensus       484 ~~v~a~n~~G~g~~s~~~~~~~t~~~~p~~~~  515 (633)
                      |+|+|.|..|.|++|... .++|...+|..|.
T Consensus        97 f~V~A~n~~G~g~~S~~~-~~~T~~~~P~~p~  127 (137)
T d1wk0a_          97 AKVQAEYNSIKGTPSEAE-IFTTLSCEPDIPN  127 (137)
T ss_dssp             EEEEEEETTEECCCCCCC-CEECCCSSSCCCS
T ss_pred             EEEEEEcCCcccCCCCCE-EEECCCCCCCCCC
Confidence            999999999999999877 4788887765543

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=1.7e-10  Score=90.16  Aligned_cols=87  Identities=15%  Similarity=0.230  Sum_probs=63.4

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEec--cC----CccceEEEccCceEEEcCCCCCCCeEEEEEEEeC
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMF--PG----NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV  320 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~--~~----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  320 (633)
                      ...+.+.+|+++.|.|.+.|.|.|.+.|++++......  ..    ..........+++|.|.+++.+|.|.|+|.|.|.
T Consensus         8 ~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a~n~   87 (102)
T d1f97a1           8 QSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEE   87 (102)
T ss_dssp             CSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEET
T ss_pred             CCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEEEEC
Confidence            34566788999999999999999999999865422110  00    0001111224458999999999999999999999


Q ss_pred             CceeEEEEEEEEE
Q psy15127        321 AGSTTVRAFLQVR  333 (633)
Q Consensus       321 ~g~~~~~~~l~v~  333 (633)
                      .|.....+.++|.
T Consensus        88 ~g~~~~~~~v~v~  100 (102)
T d1f97a1          88 GGQNYGEVSIHLT  100 (102)
T ss_dssp             TSSSEEEEEEEEE
T ss_pred             CCCEEEEEEEEEE
Confidence            9998777766665

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3e-10  Score=86.62  Aligned_cols=82  Identities=16%  Similarity=0.301  Sum_probs=67.6

Q ss_pred             CCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEec
Q psy15127        412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENS  491 (633)
Q Consensus       412 ~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~  491 (633)
                      +|..+.+...+.+++.|+|+++.     ++.+.+|.|+|+..+....+.........+.++|.+|.|++.|.|+|+|.|.
T Consensus         3 pP~~l~~~~~~~~sv~l~W~~p~-----~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~   77 (91)
T d1fnfa2           3 PPTDLRFTNIGPDTMRVTWAPPP-----SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYE   77 (91)
T ss_dssp             CCEEEEEESCCSSCEEEEEECCT-----TCCCSEEEEEEEETTCTTCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEET
T ss_pred             cCCceEEEEeCCCEEEEEEEecC-----CCCcceeEEEEEECCCCccEEEEEeCCCceEEEEeceeCCCEEEEEEEEEcC
Confidence            47777888889999999999886     4578899999998765555554444556788999999999999999999999


Q ss_pred             cccCCCC
Q psy15127        492 HGLGIPS  498 (633)
Q Consensus       492 ~G~g~~s  498 (633)
                      .|.|.+.
T Consensus        78 ~g~S~p~   84 (91)
T d1fnfa2          78 QHESTPL   84 (91)
T ss_dssp             TEECCCE
T ss_pred             CCCCCCE
Confidence            9998653

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.05  E-value=5.5e-10  Score=84.32  Aligned_cols=81  Identities=21%  Similarity=0.261  Sum_probs=68.2

Q ss_pred             CCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEe
Q psy15127        411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAEN  490 (633)
Q Consensus       411 ~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n  490 (633)
                      ++|..+++..++.+++.|+|.++.      +.+.+|.|+|+..+. ..|...........++|.+|.|++.|.|+|.|.|
T Consensus         2 ~~P~~l~v~~v~~~s~~l~W~~~~------~~~~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~   74 (88)
T d1qr4a2           2 GSPKGISFSDITENSATVSWTPPR------SRVDSYRVSYVPITG-GTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVK   74 (88)
T ss_dssp             CCCSCEEEESCCSSCEEEEECCCS------SCCSEEEEEEEETTC-CCCEEEEEETTCCEEEECSCCSSCEEEEEEEEEE
T ss_pred             cCCcceEEEEecCCEEEEEEEccc------EeeceEEEEEEeccC-CceEEEEecCCccEEEECCCCCCCEEEEEEEEEe
Confidence            468889999999999999999875      468899999998765 3444444555678999999999999999999999


Q ss_pred             ccccCCCC
Q psy15127        491 SHGLGIPS  498 (633)
Q Consensus       491 ~~G~g~~s  498 (633)
                      ..|.|.+.
T Consensus        75 ~~g~s~p~   82 (88)
T d1qr4a2          75 GFEESEPI   82 (88)
T ss_dssp             TTEECCCE
T ss_pred             CCCCcCCE
Confidence            99998763

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.05  E-value=3e-10  Score=86.84  Aligned_cols=76  Identities=14%  Similarity=0.086  Sum_probs=63.1

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      .+..++.+++.|+|++|           .+.+.+| .++|+..+...       |.    ..+......++++|.+|+|+
T Consensus        11 ~v~~v~~~si~v~W~~p-----------~~~~~~y-~i~~~~~~~~~-------~~----~~~~~~~~~~~~~i~~L~p~   67 (93)
T d1tdqa1          11 LVRDVSDTVAFVEWTPP-----------RAKVDFI-LLKYGLVGGEG-------GK----TTFRLQPPLSQYSVQALRPG   67 (93)
T ss_dssp             EEEEECSSCEEEEEECC-----------SSCCSEE-EEEEEESSSSC-------CC----EEEEECTTCSEEEECSCCTT
T ss_pred             EEEEeCCCEEEEEEEcc-----------ccCCCce-EEEEEeccCcc-------ee----eEEEeCCCceEEEEeCcccc
Confidence            78889999999999943           3678999 99999877654       21    23335567889999999999


Q ss_pred             eeEEEEEeccccccccccC
Q psy15127        614 TKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s  632 (633)
                      +.|.|+|+|.|..|+|+++
T Consensus        68 t~Y~v~V~a~~~~g~s~~~   86 (93)
T d1tdqa1          68 SRYEVSISAVRGTNESDAS   86 (93)
T ss_dssp             CEEEEEEEEEETTEECCCE
T ss_pred             eEEEEEEEEEeCCCCcCCE
Confidence            9999999999999999885

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=5.9e-11  Score=95.24  Aligned_cols=83  Identities=11%  Similarity=0.139  Sum_probs=57.6

Q ss_pred             eee-ecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeecccc
Q psy15127        534 ELI-PTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRK  612 (633)
Q Consensus       534 ~~~-~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~  612 (633)
                      .+. ..+++++.|+|++|      .....++.+.+| ++.|+....+.      .+..    ......+.+.++|.+|++
T Consensus        18 ~v~~~~s~~si~vsW~PP------~~~~~~~~~~~~-i~~Y~v~~~~~------~~~~----~~~~~~~~~~~~i~~L~~   80 (117)
T d2cspa1          18 TVQAGVTPATIRVSWRPP------VLTPTGLSNGAN-VTGYGVYAKGQ------RVAE----VIFPTADSTAVELVRLRS   80 (117)
T ss_dssp             EECCCSSTTEEEEEEECC------CCCTTSCSSSSC-EEEEEEESSSS------EEEE----ECCTTCSEEEEESHHHHH
T ss_pred             EEEEecCCCEEEEEEcCC------CccccCcccccc-eEEEEEEeecc------ccee----eeeeccceeeeeccCCCC
Confidence            453 35678999999944      223344556666 77776543332      1111    122345678899999999


Q ss_pred             ceeEEEEEeccccccccccCC
Q psy15127        613 FTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       613 ~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      ++.|.|+|+|.|..|+|++|+
T Consensus        81 ~t~Y~v~V~A~n~~G~s~~S~  101 (117)
T d2cspa1          81 LEAKGVTVRTLSAQGESVDSA  101 (117)
T ss_dssp             HTCSCBEEEEEESSCCCCCCS
T ss_pred             CcEEEEEEEEEcCCCcCCCCC
Confidence            999999999999999999985

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.04  E-value=3e-10  Score=88.87  Aligned_cols=79  Identities=13%  Similarity=0.050  Sum_probs=58.8

Q ss_pred             ecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeE
Q psy15127        537 PTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKY  616 (633)
Q Consensus       537 ~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y  616 (633)
                      ....++|.|+|++|    .......++.+.+| .++|+..+...       |...      .....+.++|.+|++++.|
T Consensus        17 ~~~~~~v~vsW~pP----~~~~~~~~~~~l~Y-~v~~~~~~~~~-------~~~~------~~~~~~~~~i~~L~p~t~Y   78 (103)
T d1f6fb2          17 KDKKTYLWVKWSPP----TITDVKTGWFTMEY-EIRLKPEEAEE-------WEIH------FTGHQTQFKVFDLYPGQKY   78 (103)
T ss_dssp             --CCCCEEEEEECC----TTSCTTTTSSCEEE-EEEEEESSCSC-------CEEE------EEETCSEEEECCCCTTCEE
T ss_pred             ccCCCEEEEEECCC----CcccCCCCcEEEEE-EEEEEeCCCcc-------eeee------cccceeEEEeCCCCcceEE
Confidence            34578899999954    21122345678899 99999887654       5432      1234789999999999999


Q ss_pred             EEEEeccccccc-cccCC
Q psy15127        617 EFFLVPFFKTVE-GARLD  633 (633)
Q Consensus       617 ~~~v~a~n~~g~-g~~s~  633 (633)
                      .|+|+|.|..|. |++|+
T Consensus        79 ~~rVra~~~~G~wS~wS~   96 (103)
T d1f6fb2          79 LVQTRCKPDHGYWSRWSQ   96 (103)
T ss_dssp             EEEEEEEESSSCCCCCCC
T ss_pred             EEEEEEEeCCCCCCCCcC
Confidence            999999999997 77774

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.1e-10  Score=90.00  Aligned_cols=82  Identities=17%  Similarity=0.127  Sum_probs=57.1

Q ss_pred             eeEEecCCceEEEEEEEeeecCCeeEEEE--CCEEEEeccCCccceEEEc---cCceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQ--EGSQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSALSVAG  322 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~--~g~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g  322 (633)
                      ..+.+..|+++.|.|.+.|.|.|.+.|++  ++....  .  ........   ..++|.|.++..+|+|.|+|.|.|..|
T Consensus         9 ~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   84 (96)
T d2c9aa1           9 QNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDA--P--LKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGG   84 (96)
T ss_dssp             CCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCC--C--EEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEEETTE
T ss_pred             CCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeee--c--CCceeEEEeecCceEEEECCCCHHHCeEEEEEEEeCCC
Confidence            45678889999999999999988655433  222111  0  01111111   124799999999999999999999999


Q ss_pred             ee-EEEEEEEEE
Q psy15127        323 ST-TVRAFLQVR  333 (633)
Q Consensus       323 ~~-~~~~~l~v~  333 (633)
                      .. +..+.|.|+
T Consensus        85 ~~~s~~a~L~Vk   96 (96)
T d2c9aa1          85 VGISNYAELVVK   96 (96)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             eEEEEEEEEEEC
Confidence            86 455788763

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.04  E-value=4.5e-10  Score=85.85  Aligned_cols=82  Identities=16%  Similarity=0.172  Sum_probs=69.4

Q ss_pred             CCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEe
Q psy15127        411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAEN  490 (633)
Q Consensus       411 ~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n  490 (633)
                      .+|..+.+..++.+++.|+|.++.      +.+.+|.|.|+..+....+.........+.++|.+|.|++.|.|+|.|.|
T Consensus         5 ~~P~~l~v~~v~~~si~v~W~~p~------~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~   78 (93)
T d1tdqa1           5 DGPTQILVRDVSDTVAFVEWTPPR------AKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVR   78 (93)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECCS------SCCSEEEEEEEESSSSCCCEEEEECTTCSEEEECSCCTTCEEEEEEEEEE
T ss_pred             CcCCCCEEEEeCCCEEEEEEEccc------cCCCceEEEEEeccCcceeeEEEeCCCceEEEEeCcccceEEEEEEEEEe
Confidence            467888889999999999999875      46889999999887655555555555678999999999999999999999


Q ss_pred             ccccCCCC
Q psy15127        491 SHGLGIPS  498 (633)
Q Consensus       491 ~~G~g~~s  498 (633)
                      ..|.|.++
T Consensus        79 ~~g~s~~~   86 (93)
T d1tdqa1          79 GTNESDAS   86 (93)
T ss_dssp             TTEECCCE
T ss_pred             CCCCcCCE
Confidence            99999765

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.8e-10  Score=89.24  Aligned_cols=86  Identities=13%  Similarity=0.252  Sum_probs=68.0

Q ss_pred             ceeEEecCCceEEEEEEEe-eecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeE
Q psy15127        247 ASLLIWNHPRVNRLSCFAE-GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT  325 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~-g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  325 (633)
                      +..++...|+.+.|.|.+. +.|.+.+.|+|+|..+..... ...++. ..+++|.|.++..+|+|.|+|.|.|..|...
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~-~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~   86 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTE-QASRIH-QHKEKLWFVPAKVEDSGHYYCVVRNSSYCLR   86 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCC-TTSSEE-EETTEEEETTCCGGGCEEEEEEEEETTEEEE
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccc-cceEEe-ccCCEEEeccceecCCEEEEEEEECCCCeEE
Confidence            3446677889999999885 678899999999865542222 222333 2456899999999999999999999999999


Q ss_pred             EEEEEEEEe
Q psy15127        326 VRAFLQVRE  334 (633)
Q Consensus       326 ~~~~l~v~~  334 (633)
                      .++.|.|.+
T Consensus        87 ~~~~L~V~~   95 (101)
T d1iray1          87 IKISAKFVE   95 (101)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEe
Confidence            999999975

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=4.9e-10  Score=87.34  Aligned_cols=92  Identities=23%  Similarity=0.251  Sum_probs=61.9

Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEee--eeceEEEecCCCCCeEEEEEE
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI--TSTSITVSDLKPDTSYMFIVR  487 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~--~~~~~~i~~L~p~~~Y~~~v~  487 (633)
                      |.+|..+.+.....+++.|+|.+|............|.++|+..+....+.......  ....+.|.+|.|++.|.|+|+
T Consensus         2 P~~P~~l~v~~~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVr   81 (101)
T d1iarb2           2 PRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVR   81 (101)
T ss_dssp             CCCCEEEEEC----CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCSCEEEEEECSSCCEEEECC-----CCCEEEEEE
T ss_pred             cccCCcCEEEEEeCCeEEEEEccccCCCCccceeeEEEEeeecccceeeeeeeeeccCccceEEEECCCCCCCEEEEEEE
Confidence            567888888888889999999988654321234567999999876555444322222  346788899999999999999


Q ss_pred             EEeccccCCCCCCC
Q psy15127        488 AENSHGLGIPSPVS  501 (633)
Q Consensus       488 a~n~~G~g~~s~~~  501 (633)
                      |.|..|.|.+|.++
T Consensus        82 A~~~~g~g~wSewS   95 (101)
T d1iarb2          82 AWAQAYNTTWSEWS   95 (101)
T ss_dssp             EECGGGTCCCCCCC
T ss_pred             EEcCCCCCCCcCCC
Confidence            99999999999887

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2.8e-10  Score=89.37  Aligned_cols=79  Identities=16%  Similarity=0.079  Sum_probs=54.2

Q ss_pred             ecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeE
Q psy15127        537 PTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKY  616 (633)
Q Consensus       537 ~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y  616 (633)
                      ..+.++|.|+|++|    +......++.+..| .++|+..+...       |...      .....+.++|.+|++++.|
T Consensus        17 ~~~~~~l~v~W~pP----~~~~~~~~~~~~~Y-~~~~~~~~~~~-------~~~~------~~~~~~~~~i~~L~p~t~Y   78 (104)
T d3d48r2          17 EDRKPYLWIKWSPP----TLIDLKTGWFTLLY-EIRLKPEKAAE-------WEIH------FAGQQTEFKILSLHPGQKY   78 (104)
T ss_dssp             ----CCEEEEEECC----TTCCCTTSSCCEEE-EEEEEETTCSS-------CEEE------EEETCSEEEECC--CCCEE
T ss_pred             cCCCCeEEEEEeCC----ccccCCCCcEEEEE-eeccccccccc-------eeee------ccccccEEEECCCCCCCEE
Confidence            44678899999965    22222345567788 88888776554       3221      2245788999999999999


Q ss_pred             EEEEeccccccc-cccCC
Q psy15127        617 EFFLVPFFKTVE-GARLD  633 (633)
Q Consensus       617 ~~~v~a~n~~g~-g~~s~  633 (633)
                      .|+|+|.|..|. |++|+
T Consensus        79 ~~rVrA~n~~G~ws~wS~   96 (104)
T d3d48r2          79 LVQVRCKPDHGYWSAWSP   96 (104)
T ss_dssp             EEEEEEEESSSCCCCCCC
T ss_pred             EEEEEEEeCCCCCCCCcC
Confidence            999999999998 88885

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.8e-09  Score=82.01  Aligned_cols=80  Identities=21%  Similarity=0.261  Sum_probs=65.8

Q ss_pred             CcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEecccc
Q psy15127        415 APVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGL  494 (633)
Q Consensus       415 ~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~  494 (633)
                      ++++..++.+++.|+|.+|.      +.+.+|.|+|+..+....+.........+.++|.+|.|++.|.|+|.|.|..|.
T Consensus         2 nl~v~~~t~~sv~l~W~~p~------~~~~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~l~~L~p~t~Y~~~V~a~~~~g~   75 (91)
T d1fnaa_           2 DLEVVAATPTSLLISWDAPA------VTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGD   75 (91)
T ss_dssp             CCEEEEECSSCEEEECCCCS------SCCSEEEEEEEETTCCSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEECTTCC
T ss_pred             CCEEEEeCCCEEEEEEEccc------eEecEEEEEEEcCCCCceeEEEEeCCCccEEEeCCCCCCCEEEEEEEEEeCCcc
Confidence            46778889999999999885      367899999998765555444444556789999999999999999999999999


Q ss_pred             CCCCCC
Q psy15127        495 GIPSPV  500 (633)
Q Consensus       495 g~~s~~  500 (633)
                      |+++..
T Consensus        76 s~~~s~   81 (91)
T d1fnaa_          76 SPASSK   81 (91)
T ss_dssp             SSCSCC
T ss_pred             CCCcCC
Confidence            987643

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=5e-10  Score=89.21  Aligned_cols=87  Identities=24%  Similarity=0.355  Sum_probs=67.8

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRA  488 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a  488 (633)
                      .|++|..+.+.. ..+++.|+|.+|...   ++++.+|.|+|+..+.  .+.........+.++|.+|.|++.|.|+|+|
T Consensus        20 vP~~P~~~~~~~-~~~si~v~W~~p~~~---~g~i~~Y~i~~~~~~~--~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A   93 (113)
T d1x5ia1          20 VPEVPSSLHVRP-LVTSIVVSWTPPENQ---NIVVRGYAIGYGIGSP--HAQTIKVDYKQRYYTIENLDPSSHYVITLKA   93 (113)
T ss_dssp             CCCSCSEEEEEE-ETTEEEEEEECCSCT---TBCCCEEEEEECSSCG--GGEEEECCTTCCEEEECSCCSSCEECCEEEE
T ss_pred             CCCCCEeeeeee-CCCEEEEEEEccccC---CccEEEEEEEeeeccc--cceeeeeeCCccEEEEeccccCcEEEEEEEE
Confidence            467777776654 568999999998754   5789999999987643  2333334445688999999999999999999


Q ss_pred             EeccccCCCCCCC
Q psy15127        489 ENSHGLGIPSPVS  501 (633)
Q Consensus       489 ~n~~G~g~~s~~~  501 (633)
                      .|..|.|+++...
T Consensus        94 ~n~~G~g~~~~~~  106 (113)
T d1x5ia1          94 FNNVGEGIPLYES  106 (113)
T ss_dssp             ECSSCBCCCCCCC
T ss_pred             ECCCcCCCCeeeE
Confidence            9999999875443

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.8e-10  Score=88.88  Aligned_cols=90  Identities=24%  Similarity=0.295  Sum_probs=69.5

Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEE
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAE  489 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~  489 (633)
                      |.+|..+.+..++.+++.|+|.++.      +.+.+|.|+|+..+. ..+. .......+.++|.+|.|++.|.|+|+|.
T Consensus         1 P~~P~~l~~~~~t~~si~l~W~~p~------~~i~~Y~v~~~~~~~-~~~~-~~~~~~~~~~~l~~L~p~t~Y~~~V~a~   72 (102)
T d2cuha1           1 PDGPTQLRALNLTEGFAVLHWKPPQ------NPVDTYDIQVTAPGA-PPLQ-AETPGSAVDYPLHDLVLHTNYTATVRGL   72 (102)
T ss_dssp             CSSCEEEECCCCSSSCEEEEEECCS------SCCSEEEEEEECSSS-CCEE-EEEETTCSEEEECSCCSSSEEEEEEEEE
T ss_pred             CcCCCccEEEEeCCCEEEEEEEeee------ccceeeEEEEEeccc-ccee-eeeeeeeeeEEEccEEeeEEEEEEEEEE
Confidence            3567778888889999999999875      468899999987653 3333 2334457899999999999999999999


Q ss_pred             eccccCCCCCCCCceeecCC
Q psy15127        490 NSHGLGIPSPVSPITRTLGL  509 (633)
Q Consensus       490 n~~G~g~~s~~~~~~~t~~~  509 (633)
                      |..|.|.++..  .++|...
T Consensus        73 ~~~~~s~~~~~--~~~T~~~   90 (102)
T d2cuha1          73 RGPNLTSPASI--TFTTGLE   90 (102)
T ss_dssp             ETTEECCCEEE--EEESCCC
T ss_pred             eCCCCcCCEEE--EEECCCC
Confidence            99999876533  3555444

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=1.5e-10  Score=93.98  Aligned_cols=89  Identities=17%  Similarity=0.280  Sum_probs=65.7

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCC------eEEEE---------EeeeeceEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTG------WVVAA---------HRITSTSITV  473 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~------~~~~~---------~~~~~~~~~i  473 (633)
                      .|++|..+.+. ...+++.|+|.+|...   +++|.+|.|+|+..+....      +....         .......++|
T Consensus         7 ~P~aP~~v~v~-~~~~si~l~W~~P~~~---~g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (123)
T d1wfta_           7 GPGAPSTVRIS-KNVDGIHLSWEPPTSP---SGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLANAH   82 (123)
T ss_dssp             CCCCCEEEEEE-ECSSEEEEEEECCSSC---CSSCCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHHHHTTCC
T ss_pred             CCcCCcccEEE-eCCCEEEEEecCchhc---CCceEEEEEEEEECCCCCccccceeeeEEEecCCceeEeecCCccEEEE
Confidence            46677777664 3678999999998854   5799999999987654321      11111         1112345678


Q ss_pred             ecCCCCCeEEEEEEEEeccccCCCCCCC
Q psy15127        474 SDLKPDTSYMFIVRAENSHGLGIPSPVS  501 (633)
Q Consensus       474 ~~L~p~~~Y~~~v~a~n~~G~g~~s~~~  501 (633)
                      .+|.|++.|.|+|+|.|..|.|++|...
T Consensus        83 ~~L~p~t~Y~frV~A~N~~G~Gp~S~~~  110 (123)
T d1wfta_          83 IDYTSRPAIVFRISAKNEKGYGPATQIR  110 (123)
T ss_dssp             CBCSSSCEEEEEEEEBSSSSBCCCEEEE
T ss_pred             cCCCCCCEEEEEEEEecCCcCCCCCCcE
Confidence            8999999999999999999999988665

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.6e-10  Score=87.52  Aligned_cols=76  Identities=14%  Similarity=0.163  Sum_probs=61.6

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++.+++.|+|++|           .+.+.+| ++.|+......       |.    .........++++|+||.|+
T Consensus         9 ~v~~vt~~sv~l~W~~p-----------~~~~~~y-~i~~~~~~~~~-------~~----~~~~~~~~~~~~~i~~L~p~   65 (94)
T d1j8ka_           9 AFTDVDVDSIKIAWESP-----------QGQVSRY-RVTYSSPEDGI-------HE----LFPAPDGEEDTAELQGLRPG   65 (94)
T ss_dssp             EEEEEETTEEEEECCCC-----------SSCCSCE-EEEEEETTTEE-------EE----ECCCCCSSCCEEEECSCCCC
T ss_pred             EEEEecCCEEEEEEeCC-----------Cccccce-EEEEEeecCCC-------ce----EEEecCCCccEEEECCCCCC
Confidence            78899999999999943           3568999 99998876543       11    11224467899999999999


Q ss_pred             eeEEEEEeccccccccccC
Q psy15127        614 TKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s  632 (633)
                      +.|.|+|.|.|..|+|+|+
T Consensus        66 t~Y~~~V~a~~~~g~S~p~   84 (94)
T d1j8ka_          66 SEYTVSVVALHDDMESQPL   84 (94)
T ss_dssp             SEEEEEEEECSSSCCCCCE
T ss_pred             CEEEEEEEEEeCCCCcCCE
Confidence            9999999999999999874

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.7e-10  Score=88.19  Aligned_cols=70  Identities=17%  Similarity=0.261  Sum_probs=56.2

Q ss_pred             EecCCceEEEEE------EEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127        251 IWNHPRVNRLSC------FAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       251 ~~~~g~~~~l~C------~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                      .+..|....|.|      .+.++|+|.+.|++||..+..    . .+.....++.|.|.++..+|+|.|+|.|.|..|..
T Consensus        10 ~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~----~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~   84 (103)
T d1iray2          10 KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL----D-NIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGK   84 (103)
T ss_dssp             EEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCC----C-SSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             EEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccC----C-CcEEEecCCEEEEcccccccCcEEEEEEEECcCCE
Confidence            356678999999      678999999999999998742    1 22233456789999999999999999999988754


Q ss_pred             E
Q psy15127        325 T  325 (633)
Q Consensus       325 ~  325 (633)
                      .
T Consensus        85 ~   85 (103)
T d1iray2          85 Q   85 (103)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=4.1e-10  Score=85.49  Aligned_cols=28  Identities=21%  Similarity=0.343  Sum_probs=23.6

Q ss_pred             cCceEEEcCCCCCCCeEEEEEEEeCCce
Q psy15127        296 QEGTLRIQGVQKEDAGFFVCSALSVAGS  323 (633)
Q Consensus       296 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  323 (633)
                      .+++|.|.+++.+|+|.|+|.|.|..+.
T Consensus        58 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~   85 (93)
T d1n26a1          58 MGRRLLLRSVQLHDSGNYSCYRAGRPAG   85 (93)
T ss_dssp             ESSEEEECSCCGGGCEEEEEESSSSCSC
T ss_pred             CCCEEEECCCChhcCEEEEEEECCcccc
Confidence            4558999999999999999999876543

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=8.4e-10  Score=84.30  Aligned_cols=81  Identities=17%  Similarity=0.185  Sum_probs=58.6

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEE
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV  326 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  326 (633)
                      .....+.+|+.+.|.|.+ +.|++.+.|+++|..+.... .............|.|.++..+|+|.|+|.|.|    ...
T Consensus        13 ~~~~~v~~G~~v~l~c~v-~~p~~~v~W~k~g~~i~~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n----~~~   86 (94)
T d1pd6a_          13 EPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSG-SKYIFESIGAKRTLTISQCSLADDAAYQCVVGG----EKC   86 (94)
T ss_dssp             CSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCS-SSSEEEEETTEEEEEECSCSSSSCEEEEEEETT----EEE
T ss_pred             CCCEEECcCCeEEEEEEE-CCCCceEEEEEcCccceeee-eeEeeeccCCeEEeecCCCCceecEEEEEEEee----EEE
Confidence            334567799999999998 55889999999999885321 112222222334799999999999999999955    445


Q ss_pred             EEEEEEE
Q psy15127        327 RAFLQVR  333 (633)
Q Consensus       327 ~~~l~v~  333 (633)
                      ++.|.|.
T Consensus        87 s~~l~V~   93 (94)
T d1pd6a_          87 STELFVK   93 (94)
T ss_dssp             CCEEEEE
T ss_pred             EEEEEEE
Confidence            5566664

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=4e-11  Score=97.86  Aligned_cols=92  Identities=18%  Similarity=0.317  Sum_probs=65.1

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccce-------eeeeeccc-----eeEeecCCc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAV-------RITWEKYN-----MATVMNAAT  601 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~-------~~~w~~~~-----~~~~~~~~~  601 (633)
                      .+..+++++|.|+|++|      . ...++.|+|| .|+|++.........       ...|....     .........
T Consensus         9 ~~~~~sstsv~lsW~pP------~-~~~~~~i~gY-~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (125)
T d2dtge3           9 SYIRTSFDKILLRWEPY------W-PPDFRDLLGF-MLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQN   80 (125)
T ss_dssp             SEEEECSSCEEEECCCC------C-SSSCCCEEEE-CCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSS
T ss_pred             EEEEecCCEEEEEEeCC------C-ccCCCcEEEE-EEEEEECCCCceEEEeeccccCCcccceecccCcceeeeecCCc
Confidence            78889999999999954      1 2345889999 999988654321110       11233221     111224556


Q ss_pred             cceEEeeccccceeEEEEEeccccccc-----cccCC
Q psy15127        602 TTSYTVTHLRKFTKYEFFLVPFFKTVE-----GARLD  633 (633)
Q Consensus       602 ~~~~~i~~L~~~t~Y~~~v~a~n~~g~-----g~~s~  633 (633)
                      .++++|.||+|++.|.|+|+|+|.+|+     |+.|+
T Consensus        81 ~~~~~l~~L~p~T~Y~~~V~A~n~~G~~~~~~g~~S~  117 (125)
T d2dtge3          81 HPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSD  117 (125)
T ss_dssp             CCEEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCC
T ss_pred             cCEEEECCCccCCEEEEEEEEEeCCCccCCCCCCCcc
Confidence            789999999999999999999999996     67775

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=8e-10  Score=86.65  Aligned_cols=83  Identities=17%  Similarity=0.144  Sum_probs=61.0

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++++++.|+|++|      ......+.+..| .++|+.....        |.....  +......+.++|.||+|+
T Consensus        10 ~v~~~~~~s~~l~W~~p------~~~~~~~~~~~~-~v~~~~~~~~--------~~~~~~--~~~~~~~~~~~i~~L~p~   72 (104)
T d2b5ib2          10 QVVHVETHRCNISWEIS------QASHYFERHLEF-EARTLSPGHT--------WEEAPL--LTLKQKQEWICLETLTPD   72 (104)
T ss_dssp             EEEEECSSCEEEEEECC------SCCGGGTTCEEE-EEEEECTTSC--------STTSCC--EEECSCCCEEEECSCCTT
T ss_pred             EEEEEeCCEEEEEEccc------cccccccceeEE-EEEEeccccc--------ceeeeE--EecCCCcEEEEECCCCCC
Confidence            89999999999999954      223345566677 8888766543        222221  223356889999999999


Q ss_pred             eeEEEEEeccccccc-cccCC
Q psy15127        614 TKYEFFLVPFFKTVE-GARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~-g~~s~  633 (633)
                      +.|.|+|+|.|..|. |.+||
T Consensus        73 t~Y~~rVra~~~~g~~g~wS~   93 (104)
T d2b5ib2          73 TQYEFQVRVKPLQGEFTTWSP   93 (104)
T ss_dssp             CEEEEEEEEEESCCSSCCCCC
T ss_pred             CEEEEEEEEEECCCCCCCCCC
Confidence            999999999999995 66664

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.6e-10  Score=92.65  Aligned_cols=101  Identities=27%  Similarity=0.426  Sum_probs=72.0

Q ss_pred             CCCCCCcEEE--EeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEE---eeeeceEEEecCCCCCeEEE
Q psy15127        410 PGPPAAPVIL--NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAH---RITSTSITVSDLKPDTSYMF  484 (633)
Q Consensus       410 p~~p~~~~~~--~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~---~~~~~~~~i~~L~p~~~Y~~  484 (633)
                      |.+|..+.+.  .....++.|+|+++...   ++.+.+|.|+|+.... ..|.....   ....+.++|.+|.+++.|.|
T Consensus         5 P~pP~~~~v~~~~~~~~si~v~W~~p~~~---~~~~~~Y~v~y~~~~~-~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~   80 (115)
T d1bqua2           5 PNPPHNLSVINSEELSSILKLTWTNPSIK---SVIILKYNIQYRTKDA-STWSQIPPEDTASTRSSFTVQDLKPFTEYVF   80 (115)
T ss_dssp             CCCCEEEEEECC--CCSCEEEEEECCGGG---GTSCEEEEEEEEETTC-SSCEECCGGGGCSCCSEEEECSCCSSEEEEE
T ss_pred             CCCCCCCEEEEeccCCCEEEEEEeecccc---ccceeeeeeeeeeeee-eeeeccccccccccccEEeeCCCccCcEEEE
Confidence            5567766654  35578899999998744   5789999999997653 33432211   12357899999999999999


Q ss_pred             EEEEEeccccCCCCCCCC--ceeecCCCCCCC
Q psy15127        485 IVRAENSHGLGIPSPVSP--ITRTLGLNSLVP  514 (633)
Q Consensus       485 ~v~a~n~~G~g~~s~~~~--~~~t~~~~p~~~  514 (633)
                      +|+|.|..|.|.+|.++.  .++|.+..|..+
T Consensus        81 ~V~a~~~~G~g~~S~~S~~~~~~T~~~~P~~~  112 (115)
T d1bqua2          81 RIRCMKEDGKGYWSDWSEEASGITYEDRPSKE  112 (115)
T ss_dssp             EEEEEETTSCSCCCCCCCCEEEEECCCHHHHH
T ss_pred             EEEEEeCCCccCCcCCcCCEEEECCCCCCCCC
Confidence            999999999998876542  455655544443

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.98  E-value=1.1e-09  Score=83.61  Aligned_cols=81  Identities=26%  Similarity=0.274  Sum_probs=65.1

Q ss_pred             CCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEE--eeeeceEEEecCCCCCeEEEEEEEE
Q psy15127        412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAH--RITSTSITVSDLKPDTSYMFIVRAE  489 (633)
Q Consensus       412 ~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~~~Y~~~v~a~  489 (633)
                      +|.++.+...+.+++.|+|.+|.      +.+.+|.|+|+..+..........  ....+.++|.+|.|++.|.|+|+|.
T Consensus         3 aP~~l~v~~~~~~sv~v~W~~p~------~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   76 (92)
T d1tdqa2           3 APKNLRVGSRTATSLDLEWDNSE------AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAV   76 (92)
T ss_dssp             CCEEEEEEEECSSCEEEEEECCS------SCCSEEEEEEEETTCCCCEEEEEECCSSSEEEEEECSCCTTCEEEEEEEEE
T ss_pred             cCcCCEEEEecCCEEEEEEEecC------CcccceEEEEEEcCCCcceeeEEEecCCCeeEEEECCccCCCEEEEEEEEE
Confidence            57788888899999999999985      468899999998764444332222  2245789999999999999999999


Q ss_pred             eccccCCCC
Q psy15127        490 NSHGLGIPS  498 (633)
Q Consensus       490 n~~G~g~~s  498 (633)
                      |..|.|.++
T Consensus        77 ~~~g~s~p~   85 (92)
T d1tdqa2          77 MNSKQSIPA   85 (92)
T ss_dssp             ETTEECCCE
T ss_pred             eCCCEecCE
Confidence            999999865

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.1e-10  Score=87.00  Aligned_cols=79  Identities=28%  Similarity=0.415  Sum_probs=63.1

Q ss_pred             CCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEE-EEeeeeceEEEecCCCCCeEEEEEEEEe
Q psy15127        412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVA-AHRITSTSITVSDLKPDTSYMFIVRAEN  490 (633)
Q Consensus       412 ~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~~~Y~~~v~a~n  490 (633)
                      +|.++.+...+.+++.|+|++|.      +.+.+|.|+|+..+.. .+... ......+.++|.+|.|++.|.|+|+|.|
T Consensus         3 aP~nl~v~~~~~~s~~l~W~~p~------~~i~~Y~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~n   75 (89)
T d1fnha3           3 APSNLRFLATTPNSLLVSWQPPR------ARITGYIIKYEKPGSP-PREVVPRPRPGVTEATITGLEPGTEYTIYVIALK   75 (89)
T ss_dssp             CCEEEEEEEEETTEEEEEEECCS------SCCSEEEEEEECTTSC-CEECTTCCCTTCCEEEEESCCTTCEEEEEEEEES
T ss_pred             cCcCCEEEEecCCEEEEEEeCCC------cCCceEEEEEeeccCC-ccEEEEEcCCCccEEEEEeeeCCCEEEEEEEEEc
Confidence            57788888999999999999975      4688999999976543 33221 1223457899999999999999999999


Q ss_pred             ccccCCC
Q psy15127        491 SHGLGIP  497 (633)
Q Consensus       491 ~~G~g~~  497 (633)
                      ..|.|.+
T Consensus        76 ~~g~S~p   82 (89)
T d1fnha3          76 NNQKSEP   82 (89)
T ss_dssp             SSCEEEE
T ss_pred             CCCEeCC
Confidence            9998754

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.98  E-value=7.5e-10  Score=83.42  Aligned_cols=79  Identities=23%  Similarity=0.306  Sum_probs=64.9

Q ss_pred             CCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEec
Q psy15127        412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENS  491 (633)
Q Consensus       412 ~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~  491 (633)
                      +|.++.+...+.+++.|+|.+|.      +.+.+|.|+|+..+.  .+.........+.++|.+|.|++.|.|+|.|.|.
T Consensus         2 aP~~l~v~~~t~~sv~v~W~~p~------~~~~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~   73 (87)
T d1qr4a1           2 NPKDLEVSDPTETTLSLRWRRPV------AKFDRYRLTYVSPSG--KKNEMEIPVDSTSFILRGLDAGTEYTISLVAEKG   73 (87)
T ss_dssp             CCEEEEEESCCSSEEEEEEECCS------SCCSEEEEEEECTTC--CEEEEEECTTCSEEEEESCCSSCEEEEEEEEESS
T ss_pred             cCcCcEEEEecCCEEEEEEECCC------CCcceeEEEeecCCc--ceeEEeCCCCcCEEEECCCCcCCEEEEEEEEEcC
Confidence            47778888889999999999986      357889999987653  3333334456789999999999999999999999


Q ss_pred             cccCCCC
Q psy15127        492 HGLGIPS  498 (633)
Q Consensus       492 ~G~g~~s  498 (633)
                      .|.|+++
T Consensus        74 ~~~s~~~   80 (87)
T d1qr4a1          74 RHKSKPT   80 (87)
T ss_dssp             SCBCCCE
T ss_pred             CCCccCE
Confidence            9998765

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1e-09  Score=83.18  Aligned_cols=81  Identities=19%  Similarity=0.372  Sum_probs=67.4

Q ss_pred             CCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEe
Q psy15127        411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAEN  490 (633)
Q Consensus       411 ~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n  490 (633)
                      +||..+++..++.+++.|+|.+|.      +++.+|.|+|+..+. ..+...........+.|.+|.|++.|.|+|+|.|
T Consensus         3 spP~~l~v~~~~~~si~v~W~~p~------~~~~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~   75 (90)
T d1fnha2           3 SPPRRARVTDATETTITISWRTKT------ETITGFQVDAVPANG-QTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLN   75 (90)
T ss_dssp             CCCEEEEEEEECSSEEEEEEECCS------SCCCCEEEEEEESSS-SCCEEEECCTTCSEEEEESCCTTCEEEEEEEEEE
T ss_pred             CcCCCCEEEEecCCEEEEEEECCC------CCCceeEEEEEEccC-CceEEEecCCCccEEEeCCCCCCcEEEEEEEEEe
Confidence            468888999999999999999875      468899999998764 3444444455678999999999999999999999


Q ss_pred             ccccCCCC
Q psy15127        491 SHGLGIPS  498 (633)
Q Consensus       491 ~~G~g~~s  498 (633)
                      ..|.|.+.
T Consensus        76 ~~g~s~p~   83 (90)
T d1fnha2          76 DNARSSPV   83 (90)
T ss_dssp             TTEECCCE
T ss_pred             CCCCcCCE
Confidence            99998753

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=7.1e-10  Score=86.94  Aligned_cols=76  Identities=18%  Similarity=0.275  Sum_probs=55.7

Q ss_pred             cceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEE
Q psy15127        540 STAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFF  619 (633)
Q Consensus       540 ~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~  619 (633)
                      ..+|.|+|++|    .......+..+..| .++|+..+...       |+.+      .....+.++|.+|++++.|.|+
T Consensus        20 ~~~v~vsW~pP----~~~~~~~~~~~l~Y-~v~y~~~~~~~-------w~~~------~~~~~~~~~i~~L~~~t~Y~fr   81 (106)
T d1axib2          20 HADIQVRWEAP----RNADIQKGWMVLEY-ELQYKEVNETK-------WKMM------DPILTTSVPVYSLKVDKEYEVR   81 (106)
T ss_dssp             EEEEEEEEECC----TTSCTTTTSCCEEE-EEEEEETTCSS-------CEEC------CCBSSSEEEEEEEETTSCEEEE
T ss_pred             cCeEEEEEcCC----CccCCCCCeeEEEE-EEeeeecCCcc-------ceee------eecccceEEECCCCCCCEEEEE
Confidence            45899999954    11112334567889 99999887654       6543      2345789999999999999999


Q ss_pred             Eeccccccc--cccCC
Q psy15127        620 LVPFFKTVE--GARLD  633 (633)
Q Consensus       620 v~a~n~~g~--g~~s~  633 (633)
                      |+|.|..|.  |++|+
T Consensus        82 VRa~~~~~g~ws~wS~   97 (106)
T d1axib2          82 VRSKQRNSGNYGEFSE   97 (106)
T ss_dssp             EEEEETTSSCCCCCCC
T ss_pred             EEEEECCCCCCCCCCC
Confidence            999986654  66664

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.9e-10  Score=88.37  Aligned_cols=78  Identities=9%  Similarity=-0.003  Sum_probs=59.4

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++...+.++++|+|++|        . .++..++| .|.|+......       |.    .........+.+.+.+|.++
T Consensus        11 ~~~~~~~~si~~~W~p~--------~-~~~~~~~y-~v~~~~~~~~~-------~~----~~~~~~~~~~~~~~~~L~~~   69 (95)
T d1bqua1          11 SCIVNEGKKMRCEWDGG--------R-ETHLETNF-TLKSEWATHKF-------AD----CKAKRDTPTSCTVDYSTVYF   69 (95)
T ss_dssp             EEEEETTSCCEEEEECC--------S-CCSSCCEE-EEEEEETTEEC-------CC----EECCSSCTTEEECSSCCCTT
T ss_pred             EEEEccCCEEEEEEeCc--------c-cCCCceEE-EEEEEEcccce-------eE----eecccccceeeeeeeecCCC
Confidence            78888999999999954        2 34556899 99998765432       21    12223455677888999999


Q ss_pred             eeEEEEEeccccccccccC
Q psy15127        614 TKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s  632 (633)
                      +.|.|+|.|.|..|.|..+
T Consensus        70 ~~Y~f~V~A~N~~G~s~S~   88 (95)
T d1bqua1          70 VNIEVWVEAENALGKVTSD   88 (95)
T ss_dssp             SCEEEEEEEEETTEEEECC
T ss_pred             cEEEEEEEEEeCCccccCC
Confidence            9999999999999998743

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=8.4e-10  Score=84.36  Aligned_cols=80  Identities=23%  Similarity=0.191  Sum_probs=65.7

Q ss_pred             CCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEec
Q psy15127        412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENS  491 (633)
Q Consensus       412 ~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~  491 (633)
                      +|.++.+..++.+++.|+|+++.      +.+.+|.|.|+..+.  .+.........+.++|.+|.|++.|.|+|+|.|.
T Consensus         4 ~P~~l~~~~~~~~sv~l~W~~p~------~~~~~Y~v~~~~~~~--~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~   75 (93)
T d2cuma1           4 APRDLEAKEVTPRTALLTWTEPP------VRPAGYLLSFHTPGG--QTQEILLPGGITSHQLLGLFPSTSYNARLQAMWG   75 (93)
T ss_dssp             CCEEEEEESCCSSCEEEEEECCS------SCCSEEEEEEECTTS--CEEEEEECSSCSEEEECSCCTTCEEEEEEEEEBT
T ss_pred             cCCCCEEEEeCCCEEEEEEEccc------cccccEEEEEEcccc--ccEEEEECCCccEEEEeCccCCCEEEEEEEEEeC
Confidence            57778888889999999999875      468899999987653  3443344556788999999999999999999999


Q ss_pred             cccCCCCC
Q psy15127        492 HGLGIPSP  499 (633)
Q Consensus       492 ~G~g~~s~  499 (633)
                      .|.|+++.
T Consensus        76 ~g~s~~~~   83 (93)
T d2cuma1          76 QSLLPPVS   83 (93)
T ss_dssp             TBCCCCEE
T ss_pred             CCCCCCEE
Confidence            99998753

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=98.96  E-value=1.2e-09  Score=82.36  Aligned_cols=80  Identities=33%  Similarity=0.493  Sum_probs=63.7

Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEE
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAE  489 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~  489 (633)
                      |++|..+.+..++.+++.|+|+++.+.    ..+.+|.+.+...      .  ......+.+++.+|.|++.|.|+|+|.
T Consensus         4 P~~P~~l~~~~~~~~sv~lsW~~p~~~----~~i~~Y~i~~~~~------~--~~~~~~t~~~~~~L~p~t~Y~~~V~A~   71 (88)
T d1k85a_           4 PTAPTNLASTAQTTSSITLSWTASTDN----VGVTGYDVYNGTA------L--ATTVTGTTATISGLAADTSYTFTVKAK   71 (88)
T ss_dssp             CCCCEEEEEEEECSSCEEEEEECCSCC----SSEEEEEEEESSS------E--EEEESSSEEEECCCCSSCEEEEEEEEE
T ss_pred             cCCCCCcEEEEecCCEEEEEEeCCCCC----CCEEEEEEEccce------E--EEecCCCEEEECCCCCCCEEEEEEEEE
Confidence            677888888889999999999988742    4688999875321      1  123456789999999999999999999


Q ss_pred             eccc-cCCCCCCC
Q psy15127        490 NSHG-LGIPSPVS  501 (633)
Q Consensus       490 n~~G-~g~~s~~~  501 (633)
                      |..| .|++|...
T Consensus        72 n~~G~~s~~S~~v   84 (88)
T d1k85a_          72 DAAGNVSAASNAV   84 (88)
T ss_dssp             ETTTEECCCCCCE
T ss_pred             ECCCCcCCCCcCE
Confidence            9999 68877654

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=9.7e-11  Score=91.81  Aligned_cols=84  Identities=11%  Similarity=-0.004  Sum_probs=58.9

Q ss_pred             eCCCceEEEcCCeEEEEEEEec-c--CCCeEEEEeCCccCCCCCeEEc------ccceEEEccCCCCCCeEEEEEEEeCC
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGG-D--PLPTILWRRDDGKMPTGRAKIL------DDRSLQIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~-~--p~p~i~W~~~~~~i~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      ..+....+.+|+.++|.|.+.| .  |.+.|+|+|++..+........      ....|.|.....+|.|.|+|+|.|..
T Consensus         7 i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~   86 (106)
T d1zxqa1           7 LTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDL   86 (106)
T ss_dssp             EEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEEC
T ss_pred             ecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecC
Confidence            4455567889999999999986 4  4458999999998743211111      11357787778888899999999988


Q ss_pred             ceEEEEEEEEEEe
Q psy15127        147 GSISLRASLTVHL  159 (633)
Q Consensus       147 g~~s~~~~l~V~~  159 (633)
                      +.....+.+.+..
T Consensus        87 ~~~~~~~~~~~s~   99 (106)
T d1zxqa1          87 MSRGGNIFHKHSA   99 (106)
T ss_dssp             GGGTCCEEEEECC
T ss_pred             CCCCCeeEecccC
Confidence            7654444444443

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=8e-10  Score=84.72  Aligned_cols=82  Identities=20%  Similarity=0.290  Sum_probs=64.9

Q ss_pred             CCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEe
Q psy15127        411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAEN  490 (633)
Q Consensus       411 ~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n  490 (633)
                      .+|.++++..++.+++.|+|.+|.      +.+.+|.++|+..+..............+.++|.+|.|++.|.|+|.|.|
T Consensus         3 d~P~~l~v~~vt~~sv~l~W~~p~------~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~   76 (94)
T d1j8ka_           3 DRPKGLAFTDVDVDSIKIAWESPQ------GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALH   76 (94)
T ss_dssp             CCCCCCEEEEEETTEEEEECCCCS------SCCSCEEEEEEETTTEEEEECCCCCSSCCEEEECSCCCCSEEEEEEEECS
T ss_pred             CCCCCCEEEEecCCEEEEEEeCCC------ccccceEEEEEeecCCCceEEEecCCCccEEEECCCCCCCEEEEEEEEEe
Confidence            358899999999999999999885      35778999998765322222222233568899999999999999999999


Q ss_pred             ccccCCCC
Q psy15127        491 SHGLGIPS  498 (633)
Q Consensus       491 ~~G~g~~s  498 (633)
                      ..|.|.+.
T Consensus        77 ~~g~S~p~   84 (94)
T d1j8ka_          77 DDMESQPL   84 (94)
T ss_dssp             SSCCCCCE
T ss_pred             CCCCcCCE
Confidence            99988764

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=9e-11  Score=97.43  Aligned_cols=80  Identities=14%  Similarity=0.174  Sum_probs=57.4

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhh--------hhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceE
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEAR--------ARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSY  605 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~--------~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  605 (633)
                      .+..++.+++.|+|++|      . ...++        .+.+| .+.|+......      .|+     .+ ..+..+.+
T Consensus        25 ~V~~v~~~sv~l~W~~P------~-~~~~~~~~~~~~~~~~~y-~v~~~~~~~~~------~~~-----~~-~~~~~~~~   84 (137)
T d1wk0a_          25 VASDIQARTVVLTWSPP------S-SLINGETDESSVPELYGY-EVLISSTGKDG------KYK-----SV-YVGEETNI   84 (137)
T ss_dssp             EEESCCSSCEEEECCCC------C-CCSTTSSCSSCSCSCCEE-EEEECSSCTTS------CCE-----EE-EEESCSEE
T ss_pred             EEEEeEcCEEEEEEeCc------C-cCCCceeeccccceEEee-EEEEeeCCCCc------cEE-----EE-EecCccEE
Confidence            57788999999999954      1 12233        34456 66665443322      122     11 33467899


Q ss_pred             EeeccccceeEEEEEeccccccccccCC
Q psy15127        606 TVTHLRKFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       606 ~i~~L~~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +|+||+|++.|.|+|+|.|..|+|++|+
T Consensus        85 ~i~~L~P~t~Y~f~V~A~n~~G~g~~S~  112 (137)
T d1wk0a_          85 TLNDLKPAMDYHAKVQAEYNSIKGTPSE  112 (137)
T ss_dssp             EECSCCTTCEECEEEEEEETTEECCCCC
T ss_pred             EECCCCCCcEEEEEEEEEcCCcccCCCC
Confidence            9999999999999999999999999985

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=8.8e-10  Score=86.80  Aligned_cols=84  Identities=6%  Similarity=-0.036  Sum_probs=55.8

Q ss_pred             eeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccce
Q psy15127        535 LIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFT  614 (633)
Q Consensus       535 ~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t  614 (633)
                      +..++.++++++|++|        .++++ .+.| ++.|..........   .|... ..........+++++.+|++++
T Consensus        14 i~~~~~~sv~~sW~p~--------~d~~~-~~~y-~~~y~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~L~~~t   79 (107)
T d1cd9b1          14 LMHLTTNSLVCQWEPG--------PETHL-PTSF-ILKSFRSRADCQYQ---GDTIP-DCVAKKRQNNCSIPRKNLLLYQ   79 (107)
T ss_dssp             EEETTTTEEEEEEECC--------SCCSS-CCEE-EEEEEECCGGGCSC---CCEEE-EEECCTTCCEEEEEGGGCCTTS
T ss_pred             EEecCCCEEEEEEcCC--------CCCCC-Ccce-eEEEEEeeccccee---eeeee-eeccccCccccEEEcCCCCcCc
Confidence            5677889999999954        33344 4677 67776554333100   01100 0111133457889999999999


Q ss_pred             eEEEEEeccccccccccC
Q psy15127        615 KYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       615 ~Y~~~v~a~n~~g~g~~s  632 (633)
                      .|.|+|.|.|..|+|..+
T Consensus        80 ~Y~frV~A~N~~G~s~S~   97 (107)
T d1cd9b1          80 YMAIWVQAENMLGSSESP   97 (107)
T ss_dssp             CEEEEEEEEETTEEEECC
T ss_pred             eEEEEEEEEeCCccccCC
Confidence            999999999999998643

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.3e-09  Score=83.46  Aligned_cols=76  Identities=12%  Similarity=0.251  Sum_probs=58.8

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++++++.|+|++|          ..+.+..| .|+|+..+..+       |+..      .....+.++|.+|.|+
T Consensus        10 ~v~~~~~~~v~l~W~~p----------~~~~~~~y-~v~y~~~~~~~-------~~~~------~~~~~~~~~~~~L~p~   65 (95)
T d2b5ic1          10 TLHKLSESQLELNWNNR----------FLNHCLEH-LVQYRTDWDHS-------WTEQ------SVDYRHKFSLPSVDGQ   65 (95)
T ss_dssp             EEEEEETTEEEEEEECS----------SCSTTCEE-EEEEEETTCSS-------CEEE------EECSSCEEEECSCCTT
T ss_pred             EEEEEeCCEEEEEECCC----------CCceeEEE-EEEEEcCCCce-------eeEe------eecccceeEcCCCCCC
Confidence            78889999999999954          23567899 99999876654       5432      1235789999999999


Q ss_pred             eeEEEEEecccccc---ccccCC
Q psy15127        614 TKYEFFLVPFFKTV---EGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g---~g~~s~  633 (633)
                      +.|.|+|+|.+..+   .|.+||
T Consensus        66 t~Y~frVRa~~~~~~~~~g~WSe   88 (95)
T d2b5ic1          66 KRYTFRVRSRFNPLCGSAQHWSE   88 (95)
T ss_dssp             SCEEEEEEEECCSSSCCCCCCCC
T ss_pred             CEEEEEEEEeeCCCCCCCCCccC
Confidence            99999999987765   444554

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.93  E-value=2e-09  Score=80.75  Aligned_cols=79  Identities=22%  Similarity=0.373  Sum_probs=65.0

Q ss_pred             CCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEec
Q psy15127        412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENS  491 (633)
Q Consensus       412 ~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~  491 (633)
                      +|.++.+...+.+++.|+|+++.      +.+.+|.|+|+..+.. .+ ........+.+.|.+|.|++.|.|+|.|.|.
T Consensus         3 ~P~nl~v~~~~~~s~~l~W~~p~------~~~~~Y~v~~~~~~~~-~~-~~~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~   74 (86)
T d1tdqa3           3 SPRDLMVTASSETSISLIWTKAS------GPIDHYRITFTPSSGI-SS-EVTVPRDRTSYTLTDLEPGAEYIISITAERG   74 (86)
T ss_dssp             CCEEEEEEEECSSCEEEEEECCC------SCCSEEEEEEECSSSC-CE-EEEEESSCSEEEECCCCTTCCEEEEEEEEET
T ss_pred             cCCCCEEEEecCCEEEEEEeCCC------CCccceEEEEeccccc-ce-EEEeCCCccEEEECCCccccEEEEEEEEEcC
Confidence            57788888899999999999985      4688999999976543 22 2334556789999999999999999999999


Q ss_pred             cccCCCC
Q psy15127        492 HGLGIPS  498 (633)
Q Consensus       492 ~G~g~~s  498 (633)
                      .|.|.++
T Consensus        75 ~~~s~p~   81 (86)
T d1tdqa3          75 RQQSLES   81 (86)
T ss_dssp             TEECCCE
T ss_pred             CCEECCE
Confidence            9998764

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.92  E-value=5.7e-09  Score=84.89  Aligned_cols=86  Identities=26%  Similarity=0.318  Sum_probs=62.6

Q ss_pred             eeCCCceEEEcCCeEEEEEEEecc---CCCeEEEEeCCccC------------------CCCCeEEcc------cceEEE
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGD---PLPTILWRRDDGKM------------------PTGRAKILD------DRSLQI  127 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~---p~p~i~W~~~~~~i------------------~~~~~~~~~------~~~L~i  127 (633)
                      ..+...+.+.+|++++|.|.+...   ....+.|++.+...                  ...+.....      +.+|+|
T Consensus         6 ~~p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I   85 (126)
T d1pkoa_           6 IGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRI   85 (126)
T ss_dssp             ECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEE
T ss_pred             ECCCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEE
Confidence            344445889999999999998532   23469999865321                  011222221      358999


Q ss_pred             ccCCCCCCeEEEEEEEeCCceEEEEEEEEEEee
Q psy15127        128 ENVGPQDEGLYICDVENLVGSISLRASLTVHLL  160 (633)
Q Consensus       128 ~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~  160 (633)
                      .+++.+|+|.|.|.+.+..+..++.+.|.|.+|
T Consensus        86 ~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P  118 (126)
T d1pkoa_          86 QNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDP  118 (126)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEEEEEEEEEEECT
T ss_pred             EEEchhHCeEEEEEEEECCCEEEEEEEEEEeCC
Confidence            999999999999999999888888899999875

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.92  E-value=3.6e-10  Score=89.09  Aligned_cols=83  Identities=22%  Similarity=0.220  Sum_probs=63.7

Q ss_pred             EecCCceEEEEEEE-eeecCCeeEEEECCEEEEeccC--CccceEEEccCceEEEcCCCCCCCe---EEEEEEEeCCcee
Q psy15127        251 IWNHPRVNRLSCFA-EGSPLPSVFWTQEGSQVLMFPG--NAYGHLHVTQEGTLRIQGVQKEDAG---FFVCSALSVAGST  324 (633)
Q Consensus       251 ~~~~g~~~~l~C~~-~g~p~~~v~W~~~g~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G---~Y~C~a~n~~g~~  324 (633)
                      ...+|+.+.|.|.+ .|.|.|.+.|++++..+.....  ....+.....+++|.|.+++.+|+|   .|+|.|.|..|..
T Consensus        13 t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~   92 (111)
T d1biha2          13 TPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDE   92 (111)
T ss_dssp             CCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSS
T ss_pred             cccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCCc
Confidence            45679999999997 8999999999998765432211  1223456667889999999998876   7999999999988


Q ss_pred             EEEEEEEEE
Q psy15127        325 TVRAFLQVR  333 (633)
Q Consensus       325 ~~~~~l~v~  333 (633)
                      .....+.+.
T Consensus        93 ~~~~~~~~i  101 (111)
T d1biha2          93 EVVLVEYEI  101 (111)
T ss_dssp             CEEEEEEEE
T ss_pred             eEEEEEEEe
Confidence            776554443

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=3.9e-09  Score=82.58  Aligned_cols=90  Identities=19%  Similarity=0.333  Sum_probs=62.8

Q ss_pred             CCCCCCcEEE----EeeCCeEEEEeCCCCCC-CCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEE
Q psy15127        410 PGPPAAPVIL----NTTRGSVTLGWGEPEPR-GGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMF  484 (633)
Q Consensus       410 p~~p~~~~~~----~~~~~~i~l~W~~~~~~-~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~  484 (633)
                      |.+|.++.+.    ......+.|+|++|... ...+..+..|.++|+..+. ..|... .......++|.+|.+++.|.|
T Consensus         3 P~pP~~l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~-~~~~~~-~~~~~~~~~i~~L~p~t~Y~~   80 (104)
T d3d48r2           3 PDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKA-AEWEIH-FAGQQTEFKILSLHPGQKYLV   80 (104)
T ss_dssp             CCCCEEEEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTC-SSCEEE-EEETCSEEEECC--CCCEEEE
T ss_pred             CcCCCCCEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeeccccccc-cceeee-ccccccEEEECCCCCCCEEEE
Confidence            5567766553    34567899999998642 1224567889999988764 334332 344567899999999999999


Q ss_pred             EEEEEecccc-CCCCCCC
Q psy15127        485 IVRAENSHGL-GIPSPVS  501 (633)
Q Consensus       485 ~v~a~n~~G~-g~~s~~~  501 (633)
                      +|+|.|..|. |++|...
T Consensus        81 rVrA~n~~G~ws~wS~~~   98 (104)
T d3d48r2          81 QVRCKPDHGYWSAWSPAT   98 (104)
T ss_dssp             EEEEEESSSCCCCCCCCE
T ss_pred             EEEEEeCCCCCCCCcCCE
Confidence            9999999997 8888765

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.91  E-value=1.6e-09  Score=83.23  Aligned_cols=79  Identities=19%  Similarity=0.244  Sum_probs=60.8

Q ss_pred             ceEEEcCCeEEEEEEEe-cc-CCCeEEEEeCCccCC-----------CCCeEEcccceEEEccCCCCCCeEEEEEEEeCC
Q psy15127         80 DATVLSGSVVEFVCRVG-GD-PLPTILWRRDDGKMP-----------TGRAKILDDRSLQIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus        80 ~~~~~~G~~~~L~C~~~-~~-p~p~i~W~~~~~~i~-----------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      .+....|++++|.|... .. ....|.|+|++..+.           ..+.....+++|+|.+++.+|+|.|+|.+.+..
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~   83 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTN   83 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETT
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCC
Confidence            45678899999999642 22 234699999887652           234455567899999999999999999999988


Q ss_pred             ceE--EEEEEEEEE
Q psy15127        147 GSI--SLRASLTVH  158 (633)
Q Consensus       147 g~~--s~~~~l~V~  158 (633)
                      |..  ++.+.|.|.
T Consensus        84 g~~~~~~~~~L~V~   97 (98)
T d1hnga1          84 GTRILNKALDLRIL   97 (98)
T ss_dssp             CCEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEEE
Confidence            874  677778775

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=6.8e-10  Score=85.19  Aligned_cols=84  Identities=12%  Similarity=0.012  Sum_probs=66.3

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRA  488 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a  488 (633)
                      +|++|.++++...+..++.++|+++.+.    +...+|.|.|+..+....+...........+.+.+|.+++.|.|+|.|
T Consensus         3 PP~~P~n~~~~~~~~~si~~~W~p~~~~----~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A   78 (95)
T d1bqua1           3 PPEKPKNLSCIVNEGKKMRCEWDGGRET----HLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEA   78 (95)
T ss_dssp             CCCCCEEEEEEEETTSCCEEEEECCSCC----SSCCEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEE
T ss_pred             CcCCCeeeEEEEccCCEEEEEEeCcccC----CCceEEEEEEEEcccceeEeecccccceeeeeeeecCCCcEEEEEEEE
Confidence            4678899999999999999999998743    334789999998765444443333334556777899999999999999


Q ss_pred             EeccccCC
Q psy15127        489 ENSHGLGI  496 (633)
Q Consensus       489 ~n~~G~g~  496 (633)
                      .|.+|.+.
T Consensus        79 ~N~~G~s~   86 (95)
T d1bqua1          79 ENALGKVT   86 (95)
T ss_dssp             EETTEEEE
T ss_pred             EeCCcccc
Confidence            99999986

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2.9e-09  Score=81.28  Aligned_cols=82  Identities=20%  Similarity=0.360  Sum_probs=62.3

Q ss_pred             CCCCCcEEEEeeC-CeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCe-EEEEEeeeeceEEEecCCCCCeEEEEEEE
Q psy15127        411 GPPAAPVILNTTR-GSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGW-VVAAHRITSTSITVSDLKPDTSYMFIVRA  488 (633)
Q Consensus       411 ~~p~~~~~~~~~~-~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~-~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a  488 (633)
                      .+|.++++..... +.+.|+|+++.     +..+.+|.|.|+..+..... ...........++|.+|.|++.|.|+|.|
T Consensus         3 ~PP~~l~v~~~~~ts~i~v~W~~p~-----~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a   77 (94)
T d1fnfa1           3 SPPTNLHLEANPDTGVLTVSWERST-----TPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYT   77 (94)
T ss_dssp             CCCEEEEEEECSSSSCEEEEEECCS-----CSSCCEEEEEEEETTTCSSCCEEEEECTTCCEEECCCCCTTSCEEEEEEE
T ss_pred             CcCcCcEEEEecCCCEEEEEeeCCC-----CCCeeEEEEEEEEecccCceEEEEEeCCCccEEEECCCCCCCEEEEEEEE
Confidence            4677788777654 46999999986     34589999999976543322 22223335678999999999999999999


Q ss_pred             EeccccCCC
Q psy15127        489 ENSHGLGIP  497 (633)
Q Consensus       489 ~n~~G~g~~  497 (633)
                      .|..|.|.+
T Consensus        78 ~~~~g~s~p   86 (94)
T d1fnfa1          78 VKDDKESVP   86 (94)
T ss_dssp             EETTEECCC
T ss_pred             EcCCCEeCC
Confidence            999998854

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=4.3e-09  Score=84.32  Aligned_cols=84  Identities=23%  Similarity=0.290  Sum_probs=66.9

Q ss_pred             eeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecC---CCCeEEEEEee-eeceEEEecCCCCCeEEEEEEEEeccccCC
Q psy15127        421 TTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDL---QTGWVVAAHRI-TSTSITVSDLKPDTSYMFIVRAENSHGLGI  496 (633)
Q Consensus       421 ~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~---~~~~~~~~~~~-~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~  496 (633)
                      ++++++.|+|+++..    ++.+.+|.|.|+..+.   ...|....... ....++|.+|.|++.|+|+|+|.|..|.|+
T Consensus        27 ~s~tsi~v~W~~p~~----~~~i~gY~v~y~~~~~~~~~~~~~~~~v~~~~~~s~~i~~L~p~t~Y~f~V~A~n~~G~G~  102 (120)
T d1ujta_          27 LTPTTVQVTWTVDRQ----PQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGM  102 (120)
T ss_dssp             CBTTEEEEEEEESSC----CSSCCEEEEEEEESSSSSTTTCCEEEECCCTTCCEEEEESCCSSEEEEEEEEEESSSCCCC
T ss_pred             eCCCeEEEEecCCCC----CCcEEEEEEEeeecccCCCCcceEEEEeccCceeEEEECCCCCCCEEEEEEEEEeCCcCcC
Confidence            568999999998863    3589999999997643   23566544332 467899999999999999999999999999


Q ss_pred             CCCCCCceeecCC
Q psy15127        497 PSPVSPITRTLGL  509 (633)
Q Consensus       497 ~s~~~~~~~t~~~  509 (633)
                      +|... .++|.+.
T Consensus       103 ~S~~~-~~~T~e~  114 (120)
T d1ujta_         103 DSESK-TVRTTEE  114 (120)
T ss_dssp             CCCCE-EEEECSS
T ss_pred             CCCCE-EEEeCCC
Confidence            99876 5777665

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.89  E-value=6.9e-09  Score=80.84  Aligned_cols=90  Identities=20%  Similarity=0.321  Sum_probs=65.8

Q ss_pred             CCCCCCcEEE----EeeCCeEEEEeCCCCCCC-CCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEE
Q psy15127        410 PGPPAAPVIL----NTTRGSVTLGWGEPEPRG-GGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMF  484 (633)
Q Consensus       410 p~~p~~~~~~----~~~~~~i~l~W~~~~~~~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~  484 (633)
                      |.+|.++.+.    .....++.|+|++|.... +.+..++.|.|+|+..+. ..|... .....+.++|.+|.+++.|.|
T Consensus         3 P~pP~nl~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~-~~~~~~-~~~~~~~~~i~~L~p~t~Y~~   80 (103)
T d1f6fb2           3 PEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEA-EEWEIH-FTGHQTQFKVFDLYPGQKYLV   80 (103)
T ss_dssp             CCCCEEEEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSC-SCCEEE-EEETCSEEEECCCCTTCEEEE
T ss_pred             CCCCCCCEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCCC-cceeee-cccceeEEEeCCCCcceEEEE
Confidence            5567766553    345678999999996431 224578899999998764 455543 334567899999999999999


Q ss_pred             EEEEEecccc-CCCCCCC
Q psy15127        485 IVRAENSHGL-GIPSPVS  501 (633)
Q Consensus       485 ~v~a~n~~G~-g~~s~~~  501 (633)
                      +|+|.|..|. |++|...
T Consensus        81 rVra~~~~G~wS~wS~~~   98 (103)
T d1f6fb2          81 QTRCKPDHGYWSRWSQES   98 (103)
T ss_dssp             EEEEEESSSCCCCCCCCE
T ss_pred             EEEEEeCCCCCCCCcCce
Confidence            9999999986 6666554

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.88  E-value=6.8e-10  Score=82.94  Aligned_cols=72  Identities=19%  Similarity=0.271  Sum_probs=56.2

Q ss_pred             ceeEEecCCceEEEEEEEeeecCC-eeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeE
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT  325 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  325 (633)
                      +....+.+|+.++|.|.+.+.|.+ .+.|++||..+.            ..+..|.|..+..+|+|.|+|.|.|..++..
T Consensus        11 P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~------------~~~~~l~i~~v~~~dsG~Y~C~a~ns~~S~~   78 (85)
T d2fcba1          11 PQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIP------------THTQPSYRFKANNNDSGEYTCQTGQTSLSDP   78 (85)
T ss_dssp             SCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECT------------TCCSSEEEEECCGGGCEEEEEECTTSBCCCC
T ss_pred             CCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccc------------ccccceEEeeccccCCcEEEEECCCCccccc
Confidence            344567789999999999999876 688999998763            1345799999999999999999988765543


Q ss_pred             EEEEEEE
Q psy15127        326 VRAFLQV  332 (633)
Q Consensus       326 ~~~~l~v  332 (633)
                        +.|.|
T Consensus        79 --v~l~V   83 (85)
T d2fcba1          79 --VHLTV   83 (85)
T ss_dssp             --EEEEE
T ss_pred             --EEEEE
Confidence              34444

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.6e-10  Score=91.32  Aligned_cols=102  Identities=22%  Similarity=0.225  Sum_probs=65.7

Q ss_pred             CCCCCCCCcEEEE-eeCCeEEEEeCCCCCCCC---CCcceeEEEEEEEEecCCCCeE-EEEEeeeeceEEEecCCCCCeE
Q psy15127        408 LFPGPPAAPVILN-TTRGSVTLGWGEPEPRGG---GVAPVIGYTVEYFSSDLQTGWV-VAAHRITSTSITVSDLKPDTSY  482 (633)
Q Consensus       408 ~~p~~p~~~~~~~-~~~~~i~l~W~~~~~~~~---~~~~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~~~Y  482 (633)
                      .+|.+|..+.+.. .+..++.|+|++|.....   +++.+.+|.+.+.    ...+. ..........+.|.+|.+++.|
T Consensus         9 ~pp~pP~~v~v~~~~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~~----~~~~~~~~~~~~~~~~~~i~~L~~~t~Y   84 (117)
T d2cspa1           9 GPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAK----GQRVAEVIFPTADSTAVELVRLRSLEAK   84 (117)
T ss_dssp             CCCCCCEEEEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEESS----SSEEEEECCTTCSEEEEESHHHHHHTCS
T ss_pred             CCCCCCCccEEEEecCCCEEEEEEcCCCccccCcccccceEEEEEEee----cccceeeeeeccceeeeeccCCCCCcEE
Confidence            3455666665533 456789999999865321   2344566655421    12222 1111223457889999999999


Q ss_pred             EEEEEEEeccccCCCCCCCCceeecCCCCCCC
Q psy15127        483 MFIVRAENSHGLGIPSPVSPITRTLGLNSLVP  514 (633)
Q Consensus       483 ~~~v~a~n~~G~g~~s~~~~~~~t~~~~p~~~  514 (633)
                      .|+|+|.|..|.|+.|... .++|....|..|
T Consensus        85 ~v~V~A~n~~G~s~~S~~v-~i~t~~~vP~~P  115 (117)
T d2cspa1          85 GVTVRTLSAQGESVDSAVA-AVPPELLVPPTP  115 (117)
T ss_dssp             CBEEEEEESSCCCCCCSCB-CCCHHHHSCCCC
T ss_pred             EEEEEEEcCCCcCCCCCCE-EeeCCCCCCccc
Confidence            9999999999999998876 456655555443

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=5.7e-09  Score=79.69  Aligned_cols=85  Identities=15%  Similarity=0.183  Sum_probs=67.8

Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEE
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAE  489 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~  489 (633)
                      |.+|.++.+...+.+.+.|+|++|.     ...+..|.|+|+..+. ..|... .......++|.+|.|++.|.|+|+|.
T Consensus         3 P~~P~nl~v~~~~~~~v~l~W~~p~-----~~~~~~y~v~y~~~~~-~~~~~~-~~~~~~~~~~~~L~p~t~Y~frVRa~   75 (95)
T d2b5ic1           3 PWAPENLTLHKLSESQLELNWNNRF-----LNHCLEHLVQYRTDWD-HSWTEQ-SVDYRHKFSLPSVDGQKRYTFRVRSR   75 (95)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEECSS-----CSTTCEEEEEEEETTC-SSCEEE-EECSSCEEEECSCCTTSCEEEEEEEE
T ss_pred             CcCCCCCEEEEEeCCEEEEEECCCC-----CceeEEEEEEEEcCCC-ceeeEe-eecccceeEcCCCCCCCEEEEEEEEe
Confidence            6789999999999999999999987     3457889999998764 456543 33456789999999999999999999


Q ss_pred             eccc---cCCCCCCC
Q psy15127        490 NSHG---LGIPSPVS  501 (633)
Q Consensus       490 n~~G---~g~~s~~~  501 (633)
                      +..|   .|.+|.++
T Consensus        76 ~~~~~~~~g~WSeWS   90 (95)
T d2b5ic1          76 FNPLCGSAQHWSEWS   90 (95)
T ss_dssp             CCSSSCCCCCCCCCC
T ss_pred             eCCCCCCCCCccCCC
Confidence            7765   44456655

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=7.9e-10  Score=85.81  Aligned_cols=77  Identities=16%  Similarity=0.155  Sum_probs=51.3

Q ss_pred             ecCCceEEEEEEEee-ecCC--eeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127        252 WNHPRVNRLSCFAEG-SPLP--SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  328 (633)
Q Consensus       252 ~~~g~~~~l~C~~~g-~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  328 (633)
                      +..|+.++|.|.+.| .|.+  +++|++++..+.......     ......|.|.....+|+|.|+|+|.|..|......
T Consensus        16 v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~-----~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~~   90 (103)
T d1iama1          16 QPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVG-----EPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLEL   90 (103)
T ss_dssp             ECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT-----TTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCE
T ss_pred             EeCCCEEEEEEEecCCCCCCceEEEEcccccccccccccc-----ccceEEEEEeeehhHCCCEEEEEEEeCCCCccCeE
Confidence            445666777776665 3433  456777776664321111     11234789999999999999999999999877666


Q ss_pred             EEEEE
Q psy15127        329 FLQVR  333 (633)
Q Consensus       329 ~l~v~  333 (633)
                      .+.+.
T Consensus        91 ~~~~s   95 (103)
T d1iama1          91 FENTS   95 (103)
T ss_dssp             EEEEC
T ss_pred             eeeEc
Confidence            66654

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.86  E-value=1.9e-09  Score=80.12  Aligned_cols=65  Identities=18%  Similarity=0.212  Sum_probs=51.9

Q ss_pred             eeEEecCCceEEEEEEEeeecCCe-eEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPS-VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~-v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                      ....+.+|+.++|.|.+.|.|.+. +.|+++|..+.            ....+|.|.++..+|+|.|+|.|.|..++.
T Consensus        13 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~------------~~~~~l~i~~~~~~d~G~Y~C~a~~s~~S~   78 (84)
T d1fnla1          13 QWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS------------SQASSYFIDAATVNDSGEYRCQTNLSTLSD   78 (84)
T ss_dssp             CCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEE------------SSCSEEEESSCCGGGCEEEEEECSSSCCCC
T ss_pred             CCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeee------------ecceeeEecCCcccCCEEEEEEccCCCccc
Confidence            345567899999999999999884 66778887653            234589999999999999999998765543

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=7.8e-09  Score=80.77  Aligned_cols=92  Identities=17%  Similarity=0.193  Sum_probs=70.1

Q ss_pred             CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCe-EEEEEeeeeceEEEecCCCCCeEEEEEE
Q psy15127        409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGW-VVAAHRITSTSITVSDLKPDTSYMFIVR  487 (633)
Q Consensus       409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~-~~~~~~~~~~~~~i~~L~p~~~Y~~~v~  487 (633)
                      ++.||.++.+..++.+++.|+|.++.... .......|.++++..+....+ ...........+.|.+|.|++.|.|+|+
T Consensus         2 rl~pP~~l~v~~~~~~s~~l~W~~p~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVr   80 (104)
T d2b5ib2           2 RLMAPISLQVVHVETHRCNISWEISQASH-YFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVR   80 (104)
T ss_dssp             CCCCCEEEEEEEECSSCEEEEEECCSCCG-GGTTCEEEEEEEECTTSCSTTSCCEEECSCCCEEEECSCCTTCEEEEEEE
T ss_pred             ccCCCCCcEEEEEeCCEEEEEEccccccc-cccceeEEEEEEecccccceeeeEEecCCCcEEEEECCCCCCCEEEEEEE
Confidence            35679999999999999999999987653 134567899999876543322 2222333567899999999999999999


Q ss_pred             EEecccc-CCCCCCC
Q psy15127        488 AENSHGL-GIPSPVS  501 (633)
Q Consensus       488 a~n~~G~-g~~s~~~  501 (633)
                      |.|..|. |.+|.++
T Consensus        81 a~~~~g~~g~wS~wS   95 (104)
T d2b5ib2          81 VKPLQGEFTTWSPWS   95 (104)
T ss_dssp             EEESCCSSCCCCCCC
T ss_pred             EEECCCCCCCCCCCc
Confidence            9999985 6666655

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=5.1e-09  Score=81.35  Aligned_cols=83  Identities=14%  Similarity=0.102  Sum_probs=64.6

Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCC--------CeEEEEEeeeeceEEEecCCCCCe
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQT--------GWVVAAHRITSTSITVSDLKPDTS  481 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~--------~~~~~~~~~~~~~~~i~~L~p~~~  481 (633)
                      |..+..+.+..++.+++.|+|+++.      +.+.+|.|+|+..+...        .+..........+++|.+|+|++.
T Consensus         4 Pp~~~~l~v~~~t~~sv~v~W~pp~------~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~   77 (101)
T d2cuia1           4 RPRLSQLSVTDVTTSSLRLNWEAPP------GAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTL   77 (101)
T ss_dssp             CCCCCCCEEESCCSSCEEEECCCCT------TSCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETTCCEEEECSCCTTCE
T ss_pred             ccCCCCcEEEEECCCEEEEEEEecc------ccccceEEEEEecCCCceeeccCCcceeEeecccceeEEEeCCCCcCCE
Confidence            4467888999999999999999875      46888999998654221        122222333567899999999999


Q ss_pred             EEEEEEEEeccccCCCC
Q psy15127        482 YMFIVRAENSHGLGIPS  498 (633)
Q Consensus       482 Y~~~v~a~n~~G~g~~s  498 (633)
                      |.|+|+|.|..|.|.++
T Consensus        78 Y~~~V~a~~~~g~g~~~   94 (101)
T d2cuia1          78 YSLTLYGLRGPHKADSI   94 (101)
T ss_dssp             EEEEEEEECSSSEEEEE
T ss_pred             EEEEEEEEeCCcEeCCe
Confidence            99999999999998764

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.5e-08  Score=79.25  Aligned_cols=91  Identities=24%  Similarity=0.226  Sum_probs=66.7

Q ss_pred             CCCCCCCcEEEEee-CCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEE
Q psy15127        409 FPGPPAAPVILNTT-RGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVR  487 (633)
Q Consensus       409 ~p~~p~~~~~~~~~-~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~  487 (633)
                      .+.||.++.+.... ...+.++|.+|....  +..++.|.|+|+..+....+.........+.+.|.+|.|++.|.|+|+
T Consensus         4 k~dPP~nl~v~~~~~~~~l~v~W~~P~~~~--~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~rVR   81 (105)
T d1erna2           4 LLDAPVGLVARLADESGHVVLRWLPPPETP--MTSHIRYEVDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVR   81 (105)
T ss_dssp             CCCCCEEEEEEECCC-CCEEEEEECSSSCS--CGGGEEEEEEEEEC-CCCEEEEEEECTTCCEEEECSCCSSCEEEEEEE
T ss_pred             ccCCCCCCEEEEecCCCcEEEEeeeccccc--cceEEEEEEEEecCCCCCceEEEeecCCccEEEEeCCCCCcEEEEEEE
Confidence            35678777766553 457999999887553  567889999999886544433333344567899999999999999999


Q ss_pred             EEec--cccCCCCCCC
Q psy15127        488 AENS--HGLGIPSPVS  501 (633)
Q Consensus       488 a~n~--~G~g~~s~~~  501 (633)
                      |.+.  .|.|.+|.++
T Consensus        82 ar~~~~~~~G~WSeWS   97 (105)
T d1erna2          82 ARMAEPSFGGFWSAWS   97 (105)
T ss_dssp             EEECSSSCCBCCCCCC
T ss_pred             EEECCCCCCCCCCCCC
Confidence            9965  4667778776

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.3e-10  Score=90.66  Aligned_cols=92  Identities=17%  Similarity=0.136  Sum_probs=69.0

Q ss_pred             CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCe--EEEEEeeeeceEEEecCCCCCeEEEEEE
Q psy15127        410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGW--VVAAHRITSTSITVSDLKPDTSYMFIVR  487 (633)
Q Consensus       410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~--~~~~~~~~~~~~~i~~L~p~~~Y~~~v~  487 (633)
                      +..|..+....++++++.|+|.+|...   ++.+.+|.|+|+..+....+  ...........+.+.+|++++ |.|+|+
T Consensus         5 ~d~P~~v~~~~~~~~sv~l~W~pP~~~---ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t-Y~~rV~   80 (102)
T d2dtge1           5 DDIVGPVTHEIFENNVVHLMWQEPKEP---NGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN-YSVRIR   80 (102)
T ss_dssp             CCCCCCCCCCSSSSSCCCCCCCCCCSC---SSCEEEECCCCBSSSBCCCCCCCCSSSCCCTTCCCCCSCCSSE-ECCCCC
T ss_pred             CCCCCCCEEEEECCCEEEEEEEeCCCC---cceEEEeeeEEEecCCCCceeeeeeecccceEEEEEeccceee-EEEEEE
Confidence            456666777778889999999998754   57899999999876533222  111122235678999999975 999999


Q ss_pred             EEeccccCCCCCCCCceee
Q psy15127        488 AENSHGLGIPSPVSPITRT  506 (633)
Q Consensus       488 a~n~~G~g~~s~~~~~~~t  506 (633)
                      |.|..|.|++|... .+.+
T Consensus        81 A~n~~G~g~~S~~v-~f~~   98 (102)
T d2dtge1          81 ATSLAGNGSWTEPT-YFYV   98 (102)
T ss_dssp             EEETTBCCCCCCCC-EECC
T ss_pred             EEcCCccCCCCCCE-EEEc
Confidence            99999999999877 3444

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=4.2e-10  Score=90.08  Aligned_cols=86  Identities=21%  Similarity=0.290  Sum_probs=63.8

Q ss_pred             EEecCCceEEEEEEEeeecC-CeeEEEECCEEEEeccCCccceE-EEccC---ceEEEcCCCCCC-CeEEEEEEEeCCce
Q psy15127        250 LIWNHPRVNRLSCFAEGSPL-PSVFWTQEGSQVLMFPGNAYGHL-HVTQE---GTLRIQGVQKED-AGFFVCSALSVAGS  323 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~p~-~~v~W~~~g~~~~~~~~~~~~~~-~~~~~---~~l~i~~~~~~d-~G~Y~C~a~n~~g~  323 (633)
                      .....|+.+.|.|.+.|.|+ +.+.|++++..+........... ....+   ..|.|.++...| +|.|+|.|.|..|.
T Consensus        16 ~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G~   95 (115)
T d2crya1          16 QHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGS   95 (115)
T ss_dssp             CCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCE
T ss_pred             EEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEEEECCCe
Confidence            34567999999999999655 58999999988753221111111 11111   369999999998 69999999999999


Q ss_pred             eEEEEEEEEEec
Q psy15127        324 TTVRAFLQVREF  335 (633)
Q Consensus       324 ~~~~~~l~v~~~  335 (633)
                      ++..+.|.|...
T Consensus        96 ~~~~~~L~V~~~  107 (115)
T d2crya1          96 DTEIIRLKEQGS  107 (115)
T ss_dssp             EEEEECCCCSCS
T ss_pred             EEEEEEEEEECC
Confidence            999999888643

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.80  E-value=5.1e-10  Score=84.43  Aligned_cols=80  Identities=13%  Similarity=0.037  Sum_probs=58.3

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEE
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV  326 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  326 (633)
                      ...+.+.+|+++.|.|.+ +.|.+.+.|++||..+..  .............+|.|.++..+|+|.|+|.|.|..+    
T Consensus         8 l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~----   80 (89)
T d1tiua_           8 LYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTA--SPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKS----   80 (89)
T ss_dssp             CCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCS--SSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBC----
T ss_pred             CcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeeccc--ceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEE----
Confidence            345677889999999997 678899999999998742  2121111222233799999999999999999976544    


Q ss_pred             EEEEEEE
Q psy15127        327 RAFLQVR  333 (633)
Q Consensus       327 ~~~l~v~  333 (633)
                      ++.|.|.
T Consensus        81 sa~l~V~   87 (89)
T d1tiua_          81 AANLKVK   87 (89)
T ss_dssp             CEEEEEE
T ss_pred             EEEEEEE
Confidence            4556665

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.1e-09  Score=82.01  Aligned_cols=75  Identities=24%  Similarity=0.330  Sum_probs=56.3

Q ss_pred             ceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCC-------------CCCeEEc-ccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         80 DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP-------------TGRAKIL-DDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        80 ~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~-------------~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      .+.+..|++++|.|... .|.+.|.|++++..+.             ..+.... .+++|+|.+++.+|+|.|+|.+.|.
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~   82 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence            46788999999999864 6788999999987652             1122221 2468999999999999999999887


Q ss_pred             CceEEEEEEEEE
Q psy15127        146 VGSISLRASLTV  157 (633)
Q Consensus       146 ~g~~s~~~~l~V  157 (633)
                      .+..  .+.|.|
T Consensus        83 ~~t~--~~~l~V   92 (93)
T d1ccza1          83 TDTM--KFFLYV   92 (93)
T ss_dssp             CSCE--EEEEEE
T ss_pred             CcEE--EEEEEE
Confidence            6644  455555

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=9.5e-09  Score=81.02  Aligned_cols=80  Identities=19%  Similarity=0.236  Sum_probs=57.8

Q ss_pred             eeeec--ccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccc
Q psy15127        534 ELIPT--ASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLR  611 (633)
Q Consensus       534 ~~~~~--~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~  611 (633)
                      ++..+  +.++|.|+|++|     .......+.+..| .++|+..+...       |...      .....+.++|.+|+
T Consensus        15 ~v~~~~~~~~~l~l~W~~P-----~~~~~~~~~~~~y-~~~~~~~~~~~-------~~~~------~~~~~~~~~i~~L~   75 (109)
T d1uc6a_          15 VARPVPSNPRRLEVTWQTP-----STWPDPESFPLKF-FLRYRPLILDQ-------WQHV------ELSNGTAHTITDAY   75 (109)
T ss_dssp             EEEECTTCTTCEEEEEECC-----TTCCCTTTTTBCE-EEEEEESSSCC-------CCCE------EESSCSEEEETTCC
T ss_pred             EEEEEecCCCEEEEEEeCC-----cccCCCCeeEEEE-EEEEeecCCCc-------eEEe------ccCCceeEEeCCCC
Confidence            45444  578899999954     2223445667889 99998877654       5432      22457889999999


Q ss_pred             cceeEEEEEeccccccccccCC
Q psy15127        612 KFTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       612 ~~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +++.|.|+|+|.|. |.|.+||
T Consensus        76 ~~t~Y~~rVrA~~~-~~g~wS~   96 (109)
T d1uc6a_          76 AGKEYIIQVAAKDN-EIGTWSD   96 (109)
T ss_dssp             SSSCEEEEEECCBS-SSCCCCC
T ss_pred             CCCEEEEEEEEEEC-CCCCcCC
Confidence            99999999999885 6666664

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=2.8e-09  Score=83.16  Aligned_cols=76  Identities=18%  Similarity=0.230  Sum_probs=56.2

Q ss_pred             EEEcCCeEEEEEEEeccCCCeEEEEeCCccCC--------------------CCCeEEcccceEEEccCCCCCCeEEEEE
Q psy15127         82 TVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP--------------------TGRAKILDDRSLQIENVGPQDEGLYICD  141 (633)
Q Consensus        82 ~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~--------------------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  141 (633)
                      .+.+|+++.|.|.........+.|+|......                    .+|..+..+++|.|.+++.+|+|.|+|.
T Consensus        10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~   89 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLD   89 (107)
T ss_dssp             SCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEEE
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEEE
Confidence            36799999999975433355799999653210                    2466666788999999999999999999


Q ss_pred             EEeCCce-EEEEEEEEE
Q psy15127        142 VENLVGS-ISLRASLTV  157 (633)
Q Consensus       142 ~~n~~g~-~s~~~~l~V  157 (633)
                      +.+..+. .+..+.|.|
T Consensus        90 v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          90 MTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEETTEEECCCCEEECC
T ss_pred             EEECCCCEEEEEEEEEE
Confidence            9877644 445556554

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2e-09  Score=87.42  Aligned_cols=93  Identities=19%  Similarity=0.291  Sum_probs=68.2

Q ss_pred             CCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCC-------------CeEEE----------EEeee
Q psy15127        411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQT-------------GWVVA----------AHRIT  467 (633)
Q Consensus       411 ~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~-------------~~~~~----------~~~~~  467 (633)
                      ..|.++.+...+++++.|+|++|....  ++.+.+|.|.|+......             .|...          .....
T Consensus         3 s~plnl~~~~~sstsv~lsW~pP~~~~--~~~i~gY~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (125)
T d2dtge3           3 NELLKFSYIRTSFDKILLRWEPYWPPD--FRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQN   80 (125)
T ss_dssp             CCBCCCSEEEECSSCEEEECCCCCSSS--CCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSS
T ss_pred             CCCEEEEEEEecCCEEEEEEeCCCccC--CCcEEEEEEEEEECCCCceEEEeeccccCCcccceecccCcceeeeecCCc
Confidence            457888999999999999999987553  478999999998653211             12110          01123


Q ss_pred             eceEEEecCCCCCeEEEEEEEEecccc-----CCCCCCCCceee
Q psy15127        468 STSITVSDLKPDTSYMFIVRAENSHGL-----GIPSPVSPITRT  506 (633)
Q Consensus       468 ~~~~~i~~L~p~~~Y~~~v~a~n~~G~-----g~~s~~~~~~~t  506 (633)
                      ...++|.+|.|++.|.|+|+|.|..|.     |+.|... .++|
T Consensus        81 ~~~~~l~~L~p~T~Y~~~V~A~n~~G~~~~~~g~~S~~v-~~~T  123 (125)
T d2dtge3          81 HPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDII-YVQT  123 (125)
T ss_dssp             CCEEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCB-CCBC
T ss_pred             cCEEEECCCccCCEEEEEEEEEeCCCccCCCCCCCcccE-EEEc
Confidence            467999999999999999999999995     5666655 3444

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.7e-09  Score=84.50  Aligned_cols=82  Identities=11%  Similarity=0.058  Sum_probs=55.4

Q ss_pred             EecCCceEEEEEEEee-ec--CCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEE
Q psy15127        251 IWNHPRVNRLSCFAEG-SP--LPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  327 (633)
Q Consensus       251 ~~~~g~~~~l~C~~~g-~p--~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  327 (633)
                      .+..|+.++|.|.+.| +|  .++++|+++|..+..................|.+.....+|.|.|+|+|.|..|.....
T Consensus        13 ~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~~~   92 (106)
T d1zxqa1          13 LVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGGN   92 (106)
T ss_dssp             EECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGGTCC
T ss_pred             EEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCCCCe
Confidence            4668999999999987 44  45899999999886332211110000112257778778888899999999998765544


Q ss_pred             EEEEE
Q psy15127        328 AFLQV  332 (633)
Q Consensus       328 ~~l~v  332 (633)
                      ..+.+
T Consensus        93 ~~~~~   97 (106)
T d1zxqa1          93 IFHKH   97 (106)
T ss_dssp             EEEEE
T ss_pred             eEecc
Confidence            44444

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=5.9e-09  Score=80.72  Aligned_cols=80  Identities=13%  Similarity=0.170  Sum_probs=52.3

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      .+.. +.+++.|.|.+|      .. ..+..+..| .|+|+.....        |......   .....+.++|.+|+|+
T Consensus        12 ~v~~-~~~s~~l~W~~P------~~-~~~~~~~~Y-~v~y~~~~~~--------~~~~~~~---~~~~~~~~~l~~L~p~   71 (100)
T d2gysa4          12 QVTK-DGDSYSLRWETM------KM-RYEHIDHTF-EIQYRKDTAT--------WKDSKTE---TLQNAHSMALPALEPS   71 (100)
T ss_dssp             EEC----CCCEEEEEC---------------CEEE-EEEEECSSSC--------STTSCEE---EEESCSEEECCCCCSS
T ss_pred             EEEE-CCCEEEEEEecC------cc-cCCccceEE-EEEEeecccc--------eeceeec---ccCCceEEEeCCCCCC
Confidence            4443 457899999965      11 223456789 9999876544        2333222   2235789999999999


Q ss_pred             eeEEEEEeccccccc--cccCC
Q psy15127        614 TKYEFFLVPFFKTVE--GARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~--g~~s~  633 (633)
                      +.|.|+|+|.+..|.  |.+||
T Consensus        72 t~Y~~rVRa~~~~g~~~g~WSe   93 (100)
T d2gysa4          72 TRYWARVRVRTSRTGYNGIWSE   93 (100)
T ss_dssp             CCCEEEEEEEECCTTCCBCCCC
T ss_pred             CeEEEEEEEEECCCCCCCCccC
Confidence            999999999998874  77775

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.5e-08  Score=80.61  Aligned_cols=83  Identities=16%  Similarity=0.142  Sum_probs=55.8

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++. .+++++.|+|++|..  .......+..+..| .++|+..+...        ...  ..+......+.+++.+|.++
T Consensus        13 ~v~-~~~~~~~lsW~~P~~--~~~~~~~~~~~~~y-~v~~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~L~p~   78 (114)
T d2gysa2          13 QIS-TDQDHFLLTWSVALG--SPQSHWLSPGDLEF-EVVYKRLQDSW--------EDA--AILLSNTSQATLGPEHLMPS   78 (114)
T ss_dssp             EEE-EETTEEEEEEECCC-------CCSCGGGEEE-EEEEEETTSCS--------TTC--EEEEESSSEEEECTTTCCTT
T ss_pred             EEE-EeCCEEEEECCCCcc--cccccceeeeEEEE-EEEEeccCCce--------EEE--EEeeccCceEEEEeCCCCCC
Confidence            553 567899999996510  00111224556678 88898876543        211  23334456778999999999


Q ss_pred             eeEEEEEeccccccccc
Q psy15127        614 TKYEFFLVPFFKTVEGA  630 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~  630 (633)
                      +.|.|+|+|.|..|.|.
T Consensus        79 t~Y~~rVRa~~~~g~~~   95 (114)
T d2gysa2          79 STYVARVRTRLAPGSRL   95 (114)
T ss_dssp             CEEEEEEEEEECTTSSC
T ss_pred             cEEEEEEEEEeCCCCCC
Confidence            99999999999999753

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=3.4e-08  Score=77.05  Aligned_cols=89  Identities=26%  Similarity=0.342  Sum_probs=61.6

Q ss_pred             CCCCCcEEEEe------eCCeEEEEeCCCCCCC-CCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEE
Q psy15127        411 GPPAAPVILNT------TRGSVTLGWGEPEPRG-GGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYM  483 (633)
Q Consensus       411 ~~p~~~~~~~~------~~~~i~l~W~~~~~~~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~  483 (633)
                      .||.++.....      ...++.|+|++|.... ..+..+..|.|+|+..+. ..|.... ....+.++|.+|.+++.|.
T Consensus         2 dPP~~l~~t~~~~s~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~-~~w~~~~-~~~~~~~~i~~L~~~t~Y~   79 (106)
T d1axib2           2 DPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNE-TKWKMMD-PILTTSVPVYSLKVDKEYE   79 (106)
T ss_dssp             CCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTC-SSCEECC-CBSSSEEEEEEEETTSCEE
T ss_pred             cCCCCceeeEeeeccccccCeEEEEEcCCCccCCCCCeeEEEEEEeeeecCC-ccceeee-ecccceEEECCCCCCCEEE
Confidence            45665544322      1347999999986531 223467899999998764 4566432 3456799999999999999


Q ss_pred             EEEEEEecccc--CCCCCCC
Q psy15127        484 FIVRAENSHGL--GIPSPVS  501 (633)
Q Consensus       484 ~~v~a~n~~G~--g~~s~~~  501 (633)
                      |+|+|.+..|.  |++|...
T Consensus        80 frVRa~~~~~g~ws~wS~~v   99 (106)
T d1axib2          80 VRVRSKQRNSGNYGEFSEVL   99 (106)
T ss_dssp             EEEEEEETTSSCCCCCCCCE
T ss_pred             EEEEEEECCCCCCCCCCCCE
Confidence            99999986542  5555443

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2.9e-08  Score=78.10  Aligned_cols=92  Identities=20%  Similarity=0.293  Sum_probs=69.0

Q ss_pred             CCCCCCCCCcEEEEe--eCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEE
Q psy15127        407 GLFPGPPAAPVILNT--TRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMF  484 (633)
Q Consensus       407 ~~~p~~p~~~~~~~~--~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~  484 (633)
                      .+.|.+|..+.+...  +...+.|+|++|....+.......|.++++..+. ..|... .......++|.+|.+++.|.|
T Consensus         5 iVkP~PP~~l~v~~~~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~~-~~~~~~-~~~~~~~~~i~~L~~~t~Y~~   82 (109)
T d1uc6a_           5 SVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLIL-DQWQHV-ELSNGTAHTITDAYAGKEYII   82 (109)
T ss_dssp             SCCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSS-CCCCCE-EESSCSEEEETTCCSSSCEEE
T ss_pred             CEECCCCCCCEEEEEecCCCEEEEEEeCCcccCCCCeeEEEEEEEEeecCC-CceEEe-ccCCceeEEeCCCCCCCEEEE
Confidence            356778888876654  5678999999987654444567789999987764 344433 233567899999999999999


Q ss_pred             EEEEEeccccCCCCCCC
Q psy15127        485 IVRAENSHGLGIPSPVS  501 (633)
Q Consensus       485 ~v~a~n~~G~g~~s~~~  501 (633)
                      +|+|.|. |.|.+|.++
T Consensus        83 rVrA~~~-~~g~wS~WS   98 (109)
T d1uc6a_          83 QVAAKDN-EIGTWSDWS   98 (109)
T ss_dssp             EEECCBS-SSCCCCCCC
T ss_pred             EEEEEEC-CCCCcCCCC
Confidence            9999885 667777776

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.2e-08  Score=75.28  Aligned_cols=34  Identities=29%  Similarity=0.512  Sum_probs=26.3

Q ss_pred             CceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127        297 EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  332 (633)
Q Consensus       297 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  332 (633)
                      +..|.|.+++.+|+|.|.|.|.|..++..  +.|.|
T Consensus        47 ~~~l~i~~v~~~d~G~Y~C~a~~s~~S~~--v~l~V   80 (82)
T d1f2qa1          47 NSSLNIVNAKFEDSGEYKCQHQQVNESEP--VYLEV   80 (82)
T ss_dssp             SSEEEECSCCGGGCEEEEEECTTSSCCCC--EEEEE
T ss_pred             cceeEECCCChhhCCcEEEEecCCCCccc--EEEEE
Confidence            34799999999999999999988765443  44544

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=4.1e-08  Score=76.59  Aligned_cols=81  Identities=15%  Similarity=0.082  Sum_probs=57.3

Q ss_pred             eeeec-ccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeecccc
Q psy15127        534 ELIPT-ASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRK  612 (633)
Q Consensus       534 ~~~~~-~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~  612 (633)
                      .+... +.+.+.|.|.+|      . ....+.+..| .|+|+..+...       |.    ..+......++++|.+|++
T Consensus        12 ~v~~~~~~~~l~v~W~~P------~-~~~~~~~~~Y-~v~y~~~~~~~-------~~----~~~~~~~~~t~~~i~~L~p   72 (105)
T d1erna2          12 VARLADESGHVVLRWLPP------P-ETPMTSHIRY-EVDVSAGNGAG-------SV----QRVEILEGRTECVLSNLRG   72 (105)
T ss_dssp             EEEECCC-CCEEEEEECS------S-SCSCGGGEEE-EEEEEEC-CCC-------EE----EEEEECTTCCEEEECSCCS
T ss_pred             EEEEecCCCcEEEEeeec------c-ccccceEEEE-EEEEecCCCCC-------ce----EEEeecCCccEEEEeCCCC
Confidence            55554 456799999954      2 3456778899 99999876543       11    1333445678999999999


Q ss_pred             ceeEEEEEecccc--ccccccCC
Q psy15127        613 FTKYEFFLVPFFK--TVEGARLD  633 (633)
Q Consensus       613 ~t~Y~~~v~a~n~--~g~g~~s~  633 (633)
                      ++.|.|+|+|.+.  .|.|.+||
T Consensus        73 ~t~Y~~rVRar~~~~~~~G~WSe   95 (105)
T d1erna2          73 RTRYTFAVRARMAEPSFGGFWSA   95 (105)
T ss_dssp             SCEEEEEEEEEECSSSCCBCCCC
T ss_pred             CcEEEEEEEEEECCCCCCCCCCC
Confidence            9999999999865  35677665

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.1e-08  Score=77.52  Aligned_cols=84  Identities=20%  Similarity=0.160  Sum_probs=55.5

Q ss_pred             CcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEecccc
Q psy15127        415 APVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGL  494 (633)
Q Consensus       415 ~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~  494 (633)
                      .+.+. ...+++.|+|.+|....  +..+..|.|+|+..+..............+.++|.+|.|++.|.|+|+|.+..|.
T Consensus        10 ~l~v~-~~~~s~~l~W~~P~~~~--~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rVRa~~~~g~   86 (100)
T d2gysa4          10 SLQVT-KDGDSYSLRWETMKMRY--EHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTG   86 (100)
T ss_dssp             EEEEC----CCCEEEEEC----------CEEEEEEEECSSSCSTTSCEEEEESCSEEECCCCCSSCCCEEEEEEEECCTT
T ss_pred             ccEEE-ECCCEEEEEEecCcccC--CccceEEEEEEeecccceeceeecccCCceEEEeCCCCCCCeEEEEEEEEECCCC
Confidence            44433 35578999999998653  3457789999997654433222223335678999999999999999999988774


Q ss_pred             --CCCCCCC
Q psy15127        495 --GIPSPVS  501 (633)
Q Consensus       495 --g~~s~~~  501 (633)
                        |.+|+++
T Consensus        87 ~~g~WSeWS   95 (100)
T d2gysa4          87 YNGIWSEWS   95 (100)
T ss_dssp             CCBCCCCCC
T ss_pred             CCCCccCCC
Confidence              7888876

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=6e-08  Score=78.32  Aligned_cols=85  Identities=21%  Similarity=0.324  Sum_probs=60.7

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCC----CeEEEEeCCccCC----------------------CCCeEEcc------
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPL----PTILWRRDDGKMP----------------------TGRAKILD------  121 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~----p~i~W~~~~~~i~----------------------~~~~~~~~------  121 (633)
                      ++.+...+.+.+|++++|.|.+...+.    ..+.|++......                      .++.....      
T Consensus         7 Vt~p~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   86 (124)
T d1eaja_           7 ITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSG   86 (124)
T ss_dssp             ESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGT
T ss_pred             EEccCceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCC
Confidence            333334578899999999999864432    2589987422110                      12333321      


Q ss_pred             cceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy15127        122 DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH  158 (633)
Q Consensus       122 ~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~  158 (633)
                      +..|+|.+++.+|+|.|.|.+.+..+..+..+.|.|.
T Consensus        87 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          87 DASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            2479999999999999999999998888888888886

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=8.9e-08  Score=75.92  Aligned_cols=93  Identities=18%  Similarity=0.193  Sum_probs=64.5

Q ss_pred             CCCCCCCCcEEEEeeCCeEEEEeCCCCCCCC---CCcceeEEEEEEEEecCCCC-eEEEEEeeeeceEEEecCCCCCeEE
Q psy15127        408 LFPGPPAAPVILNTTRGSVTLGWGEPEPRGG---GVAPVIGYTVEYFSSDLQTG-WVVAAHRITSTSITVSDLKPDTSYM  483 (633)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~---~~~~i~~Y~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~L~p~~~Y~  483 (633)
                      +.|.+|.++.+ ....+.+.|+|.+|.....   .+..+..|.|+|+..+.... +...........+.+.+|.|++.|.
T Consensus         4 vkP~pP~nl~v-~~~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~   82 (114)
T d2gysa2           4 VQPPEPRDLQI-STDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYV   82 (114)
T ss_dssp             BCCCCCEEEEE-EEETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTSCSTTCEEEEESSSEEEECTTTCCTTCEEE
T ss_pred             ccCCcCCCeEE-EEeCCEEEEECCCCcccccccceeeeEEEEEEEEeccCCceEEEEEeeccCceEEEEeCCCCCCcEEE
Confidence            34678888876 4567899999999865321   12346789999998764332 2222233345678889999999999


Q ss_pred             EEEEEEeccccC---CCCCCC
Q psy15127        484 FIVRAENSHGLG---IPSPVS  501 (633)
Q Consensus       484 ~~v~a~n~~G~g---~~s~~~  501 (633)
                      |+|+|.|..|.|   .+|.++
T Consensus        83 ~rVRa~~~~g~~~~g~wS~WS  103 (114)
T d2gysa2          83 ARVRTRLAPGSRLSGRPSKWS  103 (114)
T ss_dssp             EEEEEEECTTSSCCBCCCCCC
T ss_pred             EEEEEEeCCCCCCCCCccCCc
Confidence            999999999874   455554

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.62  E-value=4.4e-08  Score=76.69  Aligned_cols=85  Identities=21%  Similarity=0.248  Sum_probs=58.9

Q ss_pred             CCCCCCCCcEEE-EeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCC---CeEEEEE--e--eeeceEEEecCCCC
Q psy15127        408 LFPGPPAAPVIL-NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQT---GWVVAAH--R--ITSTSITVSDLKPD  479 (633)
Q Consensus       408 ~~p~~p~~~~~~-~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~---~~~~~~~--~--~~~~~~~i~~L~p~  479 (633)
                      .+|.+|..+.+. ....+++.++|+++.+.   +.+ ..|.+.|+......   .+.....  .  .....+++.+|.++
T Consensus         3 ~PP~~P~~v~~i~~~~~~sv~~sW~p~~d~---~~~-~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~   78 (107)
T d1cd9b1           3 YPPASPSNLSCLMHLTTNSLVCQWEPGPET---HLP-TSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLY   78 (107)
T ss_dssp             CCCCCCEEEEEEEETTTTEEEEEEECCSCC---SSC-CEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTT
T ss_pred             CccCCCcCCEEEEecCCCEEEEEEcCCCCC---CCC-cceeEEEEEeecccceeeeeeeeeccccCccccEEEcCCCCcC
Confidence            346778888754 45678999999988743   455 45666666543211   1221111  1  23467888999999


Q ss_pred             CeEEEEEEEEeccccCC
Q psy15127        480 TSYMFIVRAENSHGLGI  496 (633)
Q Consensus       480 ~~Y~~~v~a~n~~G~g~  496 (633)
                      +.|.|+|.|.|.+|.+.
T Consensus        79 t~Y~frV~A~N~~G~s~   95 (107)
T d1cd9b1          79 QYMAIWVQAENMLGSSE   95 (107)
T ss_dssp             SCEEEEEEEEETTEEEE
T ss_pred             ceEEEEEEEEeCCcccc
Confidence            99999999999999985

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2.4e-08  Score=76.83  Aligned_cols=80  Identities=9%  Similarity=-0.079  Sum_probs=53.2

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++..++... +|+|++|        ...++.+  | .+++.......       |... ............+++.+|.++
T Consensus         8 ~v~s~n~~~-~L~W~pP--------~~~g~~~--~-~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~l~~~   67 (98)
T d1fyhb1           8 TIESYNMNP-IVYWEYQ--------IMPQVPV--F-TVEVKNYGVKN-------SEWI-DACINISHHYCNISDHVGDPS   67 (98)
T ss_dssp             EEECBSSCC-EEEEECC--------CCSSCCE--E-EEEEEETTCSS-------SCCE-EEEEEESSSEEECGGGCCSTT
T ss_pred             EEEEeCCcE-EEEECCC--------CCCCCCc--e-eEEEEEecccc-------ceeE-EeeeecccceeeeEecccCCC
Confidence            676666555 6999965        3445544  4 44454443332       2111 112223456778889999999


Q ss_pred             eeEEEEEeccccccccccCC
Q psy15127        614 TKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      +.|.|||+|+|..|.|++|+
T Consensus        68 ~~Y~fRV~A~n~~g~S~ws~   87 (98)
T d1fyhb1          68 NSLWVRVKARVGQKESAYAK   87 (98)
T ss_dssp             SCEEEEEEEEETTEECCCEE
T ss_pred             CEEEEEEEEEcCCcccCCcc
Confidence            99999999999999999874

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.61  E-value=8.3e-08  Score=73.28  Aligned_cols=84  Identities=17%  Similarity=0.222  Sum_probs=61.0

Q ss_pred             EEecCCceEEEEEEEe-eecC-CeeEEEECCEEEEeccCC-----ccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127        250 LIWNHPRVNRLSCFAE-GSPL-PSVFWTQEGSQVLMFPGN-----AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG  322 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~-g~p~-~~v~W~~~g~~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  322 (633)
                      +....|++|+|.|... .... ..|.|++++..+......     ...+.....+++|.|.+++.+|+|.|+|++.+..|
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g   84 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG   84 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCC
Confidence            3445689999999642 2223 479999999877533221     22355666788999999999999999999999998


Q ss_pred             ee--EEEEEEEEE
Q psy15127        323 ST--TVRAFLQVR  333 (633)
Q Consensus       323 ~~--~~~~~l~v~  333 (633)
                      ..  +..+.|.|.
T Consensus        85 ~~~~~~~~~L~V~   97 (98)
T d1hnga1          85 TRILNKALDLRIL   97 (98)
T ss_dssp             CEEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEEE
Confidence            86  455566654

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=4e-08  Score=74.64  Aligned_cols=76  Identities=12%  Similarity=0.183  Sum_probs=55.2

Q ss_pred             eEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCC-------ccceEEEc-cCceEEEcCCCCCCCeEEEEEEEeC
Q psy15127        249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGN-------AYGHLHVT-QEGTLRIQGVQKEDAGFFVCSALSV  320 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~-------~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~  320 (633)
                      .+....|++++|.|.+ +.|.+.+.|.+++..+......       -..+.... .+++|.|.+++.+|+|.|+|.+.|.
T Consensus         4 ~v~~~~G~sVtl~c~~-~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~   82 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (93)
T ss_dssp             EEEEETTCCEEECCCC-SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEECCCEEEEecC-CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence            3455678999999986 4678899999999876432211       11222222 3568999999999999999999887


Q ss_pred             CceeE
Q psy15127        321 AGSTT  325 (633)
Q Consensus       321 ~g~~~  325 (633)
                      .++.+
T Consensus        83 ~~t~~   87 (93)
T d1ccza1          83 TDTMK   87 (93)
T ss_dssp             CSCEE
T ss_pred             CcEEE
Confidence            77554

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2.6e-08  Score=75.64  Aligned_cols=79  Identities=13%  Similarity=0.059  Sum_probs=49.9

Q ss_pred             eeeec-ccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeecccc
Q psy15127        534 ELIPT-ASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRK  612 (633)
Q Consensus       534 ~~~~~-~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~  612 (633)
                      .+..+ .++.+.|+|++|    +......+.....| .|+|+..+...       |+....         ...++.+|.+
T Consensus         9 ~v~~~~~~~~l~v~W~~P----~~~~~~~~~~~L~Y-ev~y~~~~~~~-------~~~~~~---------~~~t~~~L~p   67 (94)
T d3d85d3           9 QLKPLKNSRQVEVSWEYP----DTWSTPHSYFSLTF-CVQVQGKSKRE-------KKDRVF---------TDKTSATVIC   67 (94)
T ss_dssp             EEEEC----CEEEEEECC----TTSCSCTTTSCEEE-EEEEECC-------------CEEE---------ESSSEEEECC
T ss_pred             EEEEecCCCeEEEEecCC----CCcCCCCCeEEEEE-EEEEEECCCCc-------cEEecc---------ccceEEEecC
Confidence            55554 357799999965    21122234567889 99998766543       543321         1123456899


Q ss_pred             ceeEEEEEeccccccccccCC
Q psy15127        613 FTKYEFFLVPFFKTVEGARLD  633 (633)
Q Consensus       613 ~t~Y~~~v~a~n~~g~g~~s~  633 (633)
                      ++.|.|+|+|.+..|.|.+||
T Consensus        68 ~~~Y~v~VRa~~~~~~g~WSe   88 (94)
T d3d85d3          68 RKNASISVRAQDRYYSSSWSE   88 (94)
T ss_dssp             CSSCEEEEEEEESSSCCCCCC
T ss_pred             CCCEEEEEEEecCCCCCCCcc
Confidence            999999999999999999986

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.5e-07  Score=71.99  Aligned_cols=87  Identities=15%  Similarity=0.072  Sum_probs=61.3

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCC-e----EEcccceEEEccCCCCCCeEEEEEEE
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR-A----KILDDRSLQIENVGPQDEGLYICDVE  143 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~-~----~~~~~~~L~i~~v~~~d~G~Y~C~~~  143 (633)
                      ..+|.+...|.. .+..|++|+|.|... .+...+.|+|+|....... .    .......+.|.+|+..|+|.|+|...
T Consensus         5 lpkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~   82 (99)
T d1ucta1           5 FPMPFISAKSSP-VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYR   82 (99)
T ss_dssp             SCCCCEEESSCS-EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCCEEEecCCC-ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEE
Confidence            457888888865 588999999999865 4556899999876322111 0    11123479999999999999999998


Q ss_pred             eCCce--EEEEEEEEE
Q psy15127        144 NLVGS--ISLRASLTV  157 (633)
Q Consensus       144 n~~g~--~s~~~~l~V  157 (633)
                      +....  .|..+.|.|
T Consensus        83 ~~~~~S~~Sdpl~L~V   98 (99)
T d1ucta1          83 IGHYRFRYSDTLELVV   98 (99)
T ss_dssp             ETTTEEEECCCEEEEE
T ss_pred             CCCcccCCCCCEEEEe
Confidence            87553  344455554

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.3e-07  Score=71.48  Aligned_cols=88  Identities=20%  Similarity=0.169  Sum_probs=61.8

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeE---EcccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAK---ILDDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      +.+|.+...|..+ +..|++|+|.|... .....+.|+|+|.........   ......|.|.+|+.+|+|.|+|...+.
T Consensus         2 lPKPsLsa~P~~~-V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~   79 (95)
T d1olla1           2 LPKPFIWAEPHFM-VPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVG   79 (95)
T ss_dssp             CCCCEEEEESCSE-EETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCCEEEeeCCCc-ccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCC
Confidence            3578888888665 78999999999874 345678999998643211000   011247999999999999999998776


Q ss_pred             Cce--EEEEEEEEEE
Q psy15127        146 VGS--ISLRASLTVH  158 (633)
Q Consensus       146 ~g~--~s~~~~l~V~  158 (633)
                      ...  .|..+.|.|.
T Consensus        80 ~~~S~~Sd~leL~VT   94 (95)
T d1olla1          80 ELWSEPSNLLDLVVT   94 (95)
T ss_dssp             TEECCCCCCEEEEEE
T ss_pred             CCccCCCCCEEEEEe
Confidence            543  3555666654

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=1.4e-07  Score=73.30  Aligned_cols=43  Identities=19%  Similarity=0.237  Sum_probs=33.9

Q ss_pred             ceEEEccCceEEEcCCCCCCCeEEEEEEEeCCc-eeEEEEEEEE
Q psy15127        290 GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG-STTVRAFLQV  332 (633)
Q Consensus       290 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~v  332 (633)
                      +|..+..+++|.|.+++.+|+|.|+|.+.+..+ ..+..+.|.|
T Consensus        63 gR~~l~~ngSL~I~~v~~~D~G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          63 GREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             SSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEECCCCEEECC
T ss_pred             eEEEEcccccEEEcCCCchhCEEEEEEEEECCCCEEEEEEEEEE
Confidence            567777889999999999999999999987754 3445555543

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=3.9e-07  Score=68.62  Aligned_cols=76  Identities=13%  Similarity=0.180  Sum_probs=56.3

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      ..+|.+...|.. .+..|++|+|.|.......-.+.|+|+|...............+.|.+++.+|+|.|+|.....
T Consensus         3 ~PkP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2           3 YGKPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             SCCCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CCCCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccceEEcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            457888888865 5999999999998633344578999998754332222222357999999999999999997643

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=5.7e-07  Score=71.57  Aligned_cols=74  Identities=23%  Similarity=0.401  Sum_probs=54.8

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC--CccCC---------C--------------CCeEEc----c
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD--DGKMP---------T--------------GRAKIL----D  121 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~--~~~i~---------~--------------~~~~~~----~  121 (633)
                      +|.+...|..+.+.+|++++|.|.+.+.....+.|+|.  |..+.         .              .++...    .
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            47888889999999999999999998777778999982  22210         0              011111    1


Q ss_pred             cceEEEccCCCCCCeEEEEEEEe
Q psy15127        122 DRSLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus       122 ~~~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                      ..+|+|.+++.+|+|.|.|.+..
T Consensus        81 ~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          81 KYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EeEEEEcccccCCCEEEEeeEeC
Confidence            13699999999999999998753

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.3e-07  Score=72.42  Aligned_cols=80  Identities=8%  Similarity=-0.035  Sum_probs=55.6

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      ++...+ ..++|+|++|        .. .+....| .++|+......       |..+..- .........+.+.+|.++
T Consensus        11 ~~~s~n-~~~~L~W~pp--------~~-~g~~~~Y-~Ve~~~~~~~~-------W~~v~~c-~~~t~~~~~~~~~~l~~~   71 (99)
T d1y6kr1          11 WFEAEF-FHHILHWTPI--------PQ-QSESTCY-EVALLRYGIES-------WNSISQC-SQTLSYDLTAVTLDLYHS   71 (99)
T ss_dssp             EEEEET-TEEEEEECCC--------TT-CCTTCEE-EEEEEETTSCC-------CEEEEEE-ESSSEEECGGGGTTGGGS
T ss_pred             eEEEEC-CEEEEEEcCC--------CC-cCCCCEE-EEEEEECCCcc-------eEEEEee-ccccccceeeeeeecCCC
Confidence            554444 4677999954        22 2334679 99999877654       8765311 111222455678899999


Q ss_pred             eeEEEEEeccccccccccC
Q psy15127        614 TKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s  632 (633)
                      ..|.|||+|.|..|.|++|
T Consensus        72 ~~Y~fRVrA~n~~g~S~Ws   90 (99)
T d1y6kr1          72 NGYRARVRAVDGSRHSQWT   90 (99)
T ss_dssp             SCEEEEEEEEETTEECCCE
T ss_pred             CEEEEEEEEEcCCCcCCCc
Confidence            9999999999999999875

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.38  E-value=8.8e-07  Score=70.56  Aligned_cols=85  Identities=22%  Similarity=0.342  Sum_probs=56.2

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEecc----CCCeEEEEeCCc--c----C----------C-----CCCeEEcc-----cc
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGD----PLPTILWRRDDG--K----M----------P-----TGRAKILD-----DR  123 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~----p~p~i~W~~~~~--~----i----------~-----~~~~~~~~-----~~  123 (633)
                      ++..|..+.+..|++++|.|.....    ....+.|+|...  .    +          .     .+|.....     +.
T Consensus         2 vv~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   81 (119)
T d1neua_           2 VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDG   81 (119)
T ss_dssp             EEECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBC
T ss_pred             EEcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEE
Confidence            3567788999999999999997522    233799987321  1    0          0     12333221     24


Q ss_pred             eEEEccCCCCCCeEEEEEEEeCCce--EEEEEEEEEE
Q psy15127        124 SLQIENVGPQDEGLYICDVENLVGS--ISLRASLTVH  158 (633)
Q Consensus       124 ~L~i~~v~~~d~G~Y~C~~~n~~g~--~s~~~~l~V~  158 (633)
                      +|.|.+++.+|+|.|.|.+.+..+.  ....+.|.|.
T Consensus        82 sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          82 SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             CEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            7999999999999999999875432  3455666664

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=3.1e-07  Score=69.42  Aligned_cols=87  Identities=14%  Similarity=0.083  Sum_probs=57.9

Q ss_pred             CCCCCCcEEEEe-eCCeEEEEeCCCCCCCC-CCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEE
Q psy15127        410 PGPPAAPVILNT-TRGSVTLGWGEPEPRGG-GVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVR  487 (633)
Q Consensus       410 p~~p~~~~~~~~-~~~~i~l~W~~~~~~~~-~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~  487 (633)
                      |.||.++.+... .+..+.|+|.+|..... .+...+.|.|+|+..+. ..|...... .   .+..+|.|++.|.|+|+
T Consensus         2 PdPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~~~-~~~~~~~~~-~---~t~~~L~p~~~Y~v~VR   76 (94)
T d3d85d3           2 PDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSK-REKKDRVFT-D---KTSATVICRKNASISVR   76 (94)
T ss_dssp             CCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC-------CEEEE-S---SSEEEECCCSSCEEEEE
T ss_pred             CCCCcccEEEEecCCCeEEEEecCCCCcCCCCCeEEEEEEEEEEECCC-CccEEeccc-c---ceEEEecCCCCEEEEEE
Confidence            456888877654 35679999999975321 12337889999997653 445433221 2   23356889999999999


Q ss_pred             EEeccccCCCCCCC
Q psy15127        488 AENSHGLGIPSPVS  501 (633)
Q Consensus       488 a~n~~G~g~~s~~~  501 (633)
                      |.+..|.|.+|+++
T Consensus        77 a~~~~~~g~WSeWS   90 (94)
T d3d85d3          77 AQDRYYSSSWSEWA   90 (94)
T ss_dssp             EEESSSCCCCCCCE
T ss_pred             EecCCCCCCCccCc
Confidence            99999999999886

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=3.1e-07  Score=70.33  Aligned_cols=85  Identities=16%  Similarity=0.186  Sum_probs=56.2

Q ss_pred             CCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEee--eeceEEEecCCCCCeEEEEEEEE
Q psy15127        412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI--TSTSITVSDLKPDTSYMFIVRAE  489 (633)
Q Consensus       412 ~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~--~~~~~~i~~L~p~~~Y~~~v~a~  489 (633)
                      +|.++++...+... .|+|++|...   ++.+..|.++..... ...|.......  ....+++.+|.++..|.|||+|.
T Consensus         3 ~P~nv~v~s~n~~~-~L~W~pP~~~---g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~fRV~A~   77 (98)
T d1fyhb1           3 TPTNVTIESYNMNP-IVYWEYQIMP---QVPVFTVEVKNYGVK-NSEWIDACINISHHYCNISDHVGDPSNSLWVRVKAR   77 (98)
T ss_dssp             CCEEEEEECBSSCC-EEEEECCCCS---SCCEEEEEEEETTCS-SSCCEEEEEEESSSEEECGGGCCSTTSCEEEEEEEE
T ss_pred             cCCceEEEEeCCcE-EEEECCCCCC---CCCceeEEEEEeccc-cceeEEeeeecccceeeeEecccCCCCEEEEEEEEE
Confidence            47777776665444 6999998754   344444444333222 22333333333  34556778999999999999999


Q ss_pred             eccccCCCCCCC
Q psy15127        490 NSHGLGIPSPVS  501 (633)
Q Consensus       490 n~~G~g~~s~~~  501 (633)
                      |+.|.|+++...
T Consensus        78 n~~g~S~ws~s~   89 (98)
T d1fyhb1          78 VGQKESAYAKSE   89 (98)
T ss_dssp             ETTEECCCEECC
T ss_pred             cCCcccCCccCC
Confidence            999999987554

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=3.8e-07  Score=68.21  Aligned_cols=73  Identities=21%  Similarity=0.283  Sum_probs=54.4

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEE
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVE  143 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~  143 (633)
                      +.+|.+...|..+ +..|++|+|.|... .....+.|+|+|......+........+.|.+++.+|+|.|+|...
T Consensus         2 ypkPsLsa~P~~~-V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2           2 YDTPTLSVHPGPE-VISGEKVTFYCRLD-TATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             SCCCEEEEESCSE-EETTCEEEEEEECS-SSCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CCCCEEEEeCCCc-ccCCCcEEEEECCC-CCCCEEEEEECCCccceeecCCCceeEEEecccChhcCceEEEEeE
Confidence            5678888888655 88999999999864 3456799999887543221111223579999999999999999753

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.35  E-value=2.2e-06  Score=68.93  Aligned_cols=85  Identities=20%  Similarity=0.213  Sum_probs=58.6

Q ss_pred             EEecCCceEEEEEEEeeecC---CeeEEEECCEE--EEec-cC---------CccceEEEc------cCceEEEcCCCCC
Q psy15127        250 LIWNHPRVNRLSCFAEGSPL---PSVFWTQEGSQ--VLMF-PG---------NAYGHLHVT------QEGTLRIQGVQKE  308 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~p~---~~v~W~~~g~~--~~~~-~~---------~~~~~~~~~------~~~~l~i~~~~~~  308 (633)
                      +....|++++|.|.+.....   ..+.|++.+..  .... .+         ....+....      .+.+|.|.+++.+
T Consensus        12 V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~   91 (126)
T d1pkoa_          12 IRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFS   91 (126)
T ss_dssp             EEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGG
T ss_pred             EEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEchh
Confidence            55668999999999864333   46899986532  1110 00         111222221      1347999999999


Q ss_pred             CCeEEEEEEEeCCceeEEEEEEEEEe
Q psy15127        309 DAGFFVCSALSVAGSTTVRAFLQVRE  334 (633)
Q Consensus       309 d~G~Y~C~a~n~~g~~~~~~~l~v~~  334 (633)
                      |+|.|.|.+.+..+..+..+.|.|.+
T Consensus        92 D~G~Y~C~v~~~~~~~~~~v~L~V~~  117 (126)
T d1pkoa_          92 DEGGYTCFFRDHSYQEEAAVELKVED  117 (126)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             HCeEEEEEEEECCCEEEEEEEEEEeC
Confidence            99999999999999888888898875

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.32  E-value=9.3e-07  Score=69.49  Aligned_cols=72  Identities=24%  Similarity=0.387  Sum_probs=52.7

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCc--cC-------C------CCCeEEcc-----cceEEEccCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG--KM-------P------TGRAKILD-----DRSLQIENVGPQ  133 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~--~i-------~------~~~~~~~~-----~~~L~i~~v~~~  133 (633)
                      +...|..+.+.+|++++|.|.........+.||+...  ..       .      .+++....     ..+|+|.+++.+
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~   82 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLS   82 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGG
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChh
Confidence            4566889999999999999998766666899998432  11       0      11222211     247999999999


Q ss_pred             CCeEEEEEEEeC
Q psy15127        134 DEGLYICDVENL  145 (633)
Q Consensus       134 d~G~Y~C~~~n~  145 (633)
                      |+|.|.|.+...
T Consensus        83 Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          83 DSASYICVVSDR   94 (114)
T ss_dssp             GCSEEEEEEECS
T ss_pred             hCcccceeeecC
Confidence            999999998754

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=4.1e-07  Score=69.33  Aligned_cols=73  Identities=26%  Similarity=0.429  Sum_probs=50.3

Q ss_pred             eEEEcCCeEEEEEEEeccCCCeEEEEeCCccC------------C---CCCeEEc------ccceEEEccCCCCCCeEEE
Q psy15127         81 ATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM------------P---TGRAKIL------DDRSLQIENVGPQDEGLYI  139 (633)
Q Consensus        81 ~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i------------~---~~~~~~~------~~~~L~i~~v~~~d~G~Y~  139 (633)
                      +...+|++++|.|.........+.|++.....            .   .++....      .+.+|+|.+++.+|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            46789999999999876666689999864321            0   1122111      1236999999999999999


Q ss_pred             EEEEeCCceEEEEEEEEE
Q psy15127        140 CDVENLVGSISLRASLTV  157 (633)
Q Consensus       140 C~~~n~~g~~s~~~~l~V  157 (633)
                      |.+.+.    +..+.|.|
T Consensus        84 C~v~~~----~~~v~L~V   97 (97)
T d2nxyb1          84 CEVEDQ----KEEVQLLV   97 (97)
T ss_dssp             EEETTE----EEEEEEEE
T ss_pred             EEEecC----CeEEEEEC
Confidence            999643    34445543

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.31  E-value=7.4e-07  Score=70.11  Aligned_cols=72  Identities=17%  Similarity=0.160  Sum_probs=52.5

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC-------------CCCCeEEcc-----cceEEEccCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM-------------PTGRAKILD-----DRSLQIENVGPQ  133 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i-------------~~~~~~~~~-----~~~L~i~~v~~~  133 (633)
                      ++..|..+.+.+|++++|.|.........+.|||..  ...             ...++....     ...|.|.+++.+
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLS   83 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccc
Confidence            456677889999999999999876666789999842  211             012222221     246999999999


Q ss_pred             CCeEEEEEEEeC
Q psy15127        134 DEGLYICDVENL  145 (633)
Q Consensus       134 d~G~Y~C~~~n~  145 (633)
                      |+|.|.|.+...
T Consensus        84 Dsg~YyCa~~~~   95 (115)
T d1lp9e1          84 DSALYYCALFLA   95 (115)
T ss_dssp             GCEEEEEEEEEC
T ss_pred             cCccceEEEEcC
Confidence            999999987654

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=6.4e-07  Score=70.97  Aligned_cols=85  Identities=21%  Similarity=0.360  Sum_probs=57.0

Q ss_pred             eCCCceEEEcCCeEEEEEEEecc---CCCeEEEEeCCcc--C-------------CCCCeEEcc-----cceEEEccCCC
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGD---PLPTILWRRDDGK--M-------------PTGRAKILD-----DRSLQIENVGP  132 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~---p~p~i~W~~~~~~--i-------------~~~~~~~~~-----~~~L~i~~v~~  132 (633)
                      ..|+.+.+.+|++++|.|.....   ....+.|+|....  +             ..++.....     +..|+|.+++.
T Consensus         4 t~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~   83 (116)
T d1xeda_           4 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ   83 (116)
T ss_dssp             BCCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             cCCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCc
Confidence            46788999999999999987422   2235789884321  1             012322221     14799999999


Q ss_pred             CCCeEEEEEEEeCCceEEEEEEEEEEee
Q psy15127        133 QDEGLYICDVENLVGSISLRASLTVHLL  160 (633)
Q Consensus       133 ~d~G~Y~C~~~n~~g~~s~~~~l~V~~~  160 (633)
                      +|+|.|.|.+..........+.|+|.+.
T Consensus        84 ~DsG~Y~C~v~~~~~~~~~~v~L~V~~~  111 (116)
T d1xeda_          84 DDSGRYKCGLGINSRGLSFDVSLEVLEH  111 (116)
T ss_dssp             GGCEEEEEEESCGGGCCEEEEEEEEECC
T ss_pred             CCCEEEEEEEEcCCCCceEeEEEEEECC
Confidence            9999999998754444455677777754

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.27  E-value=1.3e-06  Score=68.75  Aligned_cols=69  Identities=30%  Similarity=0.546  Sum_probs=49.5

Q ss_pred             eeCCCceEEEcCCeEEEEEEEec-cCCCeEEEEeCC-----ccC------------------CCCCeEEcc-----cceE
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGG-DPLPTILWRRDD-----GKM------------------PTGRAKILD-----DRSL  125 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~-~p~p~i~W~~~~-----~~i------------------~~~~~~~~~-----~~~L  125 (633)
                      +..|..+.+.+|++++|.|.+.+ .....+.|||..     +.+                  ...+.....     ...|
T Consensus         2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (115)
T d2atpb1           2 IQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL   81 (115)
T ss_dssp             EEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEE
T ss_pred             EeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEE
Confidence            46788889999999999999875 344579999742     111                  111222211     2479


Q ss_pred             EEccCCCCCCeEEEEEEE
Q psy15127        126 QIENVGPQDEGLYICDVE  143 (633)
Q Consensus       126 ~i~~v~~~d~G~Y~C~~~  143 (633)
                      +|.+++.+|+|.|.|.+.
T Consensus        82 ~I~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          82 SIMNVKPEDSDFYFCATV   99 (115)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             eecccCCCCCcEEEEeEc
Confidence            999999999999999875

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.25  E-value=1.8e-06  Score=66.65  Aligned_cols=71  Identities=21%  Similarity=0.323  Sum_probs=51.5

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC-------------CCCCeEEcc---cceEEEccCCCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM-------------PTGRAKILD---DRSLQIENVGPQDE  135 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i-------------~~~~~~~~~---~~~L~i~~v~~~d~  135 (633)
                      ++..|..+.+.+|++++|.|...+.....+.|||..  ...             ..+++....   +..|+|.+++.+|+
T Consensus         4 ~tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1ospl1           4 MSQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDV   83 (107)
T ss_dssp             EECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccC
Confidence            345688899999999999999875545579999842  211             112333322   25799999999999


Q ss_pred             eEEEEEEEe
Q psy15127        136 GLYICDVEN  144 (633)
Q Consensus       136 G~Y~C~~~n  144 (633)
                      |.|.|.+..
T Consensus        84 a~YyCa~~~   92 (107)
T d1ospl1          84 ATYFCQQYW   92 (107)
T ss_dssp             SEEEEEECS
T ss_pred             CcEEEeecc
Confidence            999998653

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.24  E-value=1.7e-06  Score=66.89  Aligned_cols=70  Identities=19%  Similarity=0.310  Sum_probs=51.3

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC-------------CCCCeEEc---ccceEEEccCCCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM-------------PTGRAKIL---DDRSLQIENVGPQDE  135 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i-------------~~~~~~~~---~~~~L~i~~v~~~d~  135 (633)
                      ++..|..+.+.+|++++|.|.........+.|||..  +..             ...+....   .+..|+|.+++.+|+
T Consensus         4 ~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DS   83 (107)
T d1kcvl1           4 MTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDD   83 (107)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCC
Confidence            456788899999999999999876555679999842  211             01222221   235799999999999


Q ss_pred             eEEEEEEE
Q psy15127        136 GLYICDVE  143 (633)
Q Consensus       136 G~Y~C~~~  143 (633)
                      |.|.|.+.
T Consensus        84 a~YyCa~~   91 (107)
T d1kcvl1          84 ADYYCGQS   91 (107)
T ss_dssp             EEEEEEEC
T ss_pred             ceEEEEec
Confidence            99999864

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.24  E-value=1.5e-06  Score=66.90  Aligned_cols=71  Identities=24%  Similarity=0.326  Sum_probs=51.0

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC-------------CCCCeEEc---ccceEEEccCCCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM-------------PTGRAKIL---DDRSLQIENVGPQDE  135 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i-------------~~~~~~~~---~~~~L~i~~v~~~d~  135 (633)
                      ++..|..+.+.+|++++|.|.........+.||+..  ...             ..++....   ....|+|.+++.+|+
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~Ds   82 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDI   82 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             eECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCC
Confidence            455688889999999999999865555579999842  211             01222221   124799999999999


Q ss_pred             eEEEEEEEe
Q psy15127        136 GLYICDVEN  144 (633)
Q Consensus       136 G~Y~C~~~n  144 (633)
                      |.|.|.+..
T Consensus        83 A~YyCa~~~   91 (106)
T d1a0ql1          83 ATYYCLQYY   91 (106)
T ss_dssp             SEEEEEECS
T ss_pred             EeEEEEEeC
Confidence            999998753

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.23  E-value=1.5e-06  Score=66.78  Aligned_cols=71  Identities=24%  Similarity=0.348  Sum_probs=51.3

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC--CccC-------------CCCCeEEc---ccceEEEccCCCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD--DGKM-------------PTGRAKIL---DDRSLQIENVGPQDE  135 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~--~~~i-------------~~~~~~~~---~~~~L~i~~v~~~d~  135 (633)
                      ++..|..+.+.+|++++|.|.........+.|||.  |+..             ..++....   .+..|.|.+++.+|+
T Consensus         4 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   83 (107)
T d1c5cl1           4 LTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDF   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCC
Confidence            44668888999999999999987665667999983  3221             01122211   235899999999999


Q ss_pred             eEEEEEEEe
Q psy15127        136 GLYICDVEN  144 (633)
Q Consensus       136 G~Y~C~~~n  144 (633)
                      |.|.|.+.+
T Consensus        84 a~YyCa~~~   92 (107)
T d1c5cl1          84 ADYYCLQYA   92 (107)
T ss_dssp             SEEEEEECS
T ss_pred             eEEEEecCc
Confidence            999997653

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.23  E-value=2e-06  Score=66.53  Aligned_cols=71  Identities=24%  Similarity=0.409  Sum_probs=51.3

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC-------------CCCCeEEc---ccceEEEccCCCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM-------------PTGRAKIL---DDRSLQIENVGPQDE  135 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i-------------~~~~~~~~---~~~~L~i~~v~~~d~  135 (633)
                      ++..|..+.+.+|++++|.|.........+.|||..  +..             ...++...   .+..|.|.+++.+|+
T Consensus         4 ~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1j1pl_           4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCC
Confidence            456688899999999999999865555579999843  221             01222221   135799999999999


Q ss_pred             eEEEEEEEe
Q psy15127        136 GLYICDVEN  144 (633)
Q Consensus       136 G~Y~C~~~n  144 (633)
                      |.|.|.+.+
T Consensus        84 a~YyCa~~~   92 (107)
T d1j1pl_          84 GMYFCQQAN   92 (107)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEEcCC
Confidence            999997643

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.20  E-value=3.3e-06  Score=65.05  Aligned_cols=71  Identities=23%  Similarity=0.413  Sum_probs=50.5

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC----------C---CCCeEEcc---cceEEEccCCCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM----------P---TGRAKILD---DRSLQIENVGPQDE  135 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i----------~---~~~~~~~~---~~~L~i~~v~~~d~  135 (633)
                      ++..|..+.+.+|++++|.|...+.....+.||+..  +..          .   ..+.....   +..|+|.+++.+|+
T Consensus         4 vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   83 (108)
T d1jhll_           4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDF   83 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCC
T ss_pred             EEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccc
Confidence            456688899999999999999876555679999843  211          0   11121111   23799999999999


Q ss_pred             eEEEEEEEe
Q psy15127        136 GLYICDVEN  144 (633)
Q Consensus       136 G~Y~C~~~n  144 (633)
                      |.|.|.+.+
T Consensus        84 a~YyCA~~~   92 (108)
T d1jhll_          84 AMYICQQHN   92 (108)
T ss_dssp             SEEEEEECS
T ss_pred             eEEEEeeCC
Confidence            999997654

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.20  E-value=4.2e-06  Score=65.47  Aligned_cols=72  Identities=24%  Similarity=0.398  Sum_probs=51.6

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEecc-CCCeEEEEeC--Ccc---C-----------CCCCeEEcc-----cceEEEccCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGD-PLPTILWRRD--DGK---M-----------PTGRAKILD-----DRSLQIENVG  131 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~-p~p~i~W~~~--~~~---i-----------~~~~~~~~~-----~~~L~i~~v~  131 (633)
                      ++..|..+.+.+|++++|.|.+.+. ....+.|||.  +..   +           ..+++....     +..|.|.+++
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence            4567888999999999999998643 3446899984  221   1           123333322     1369999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy15127        132 PQDEGLYICDVENL  145 (633)
Q Consensus       132 ~~d~G~Y~C~~~n~  145 (633)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          82 RNDSGIYLCGAISL   95 (114)
T ss_dssp             GGGCEEEEEEEECS
T ss_pred             cCCCeEEEEEEEeC
Confidence            99999999988643

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=4.3e-06  Score=64.93  Aligned_cols=88  Identities=14%  Similarity=0.135  Sum_probs=57.5

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEec-cCCC--eEEEEeCCccCCCC--------CeEEcccceEEEccCCCCCCeEE
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGG-DPLP--TILWRRDDGKMPTG--------RAKILDDRSLQIENVGPQDEGLY  138 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~-~p~p--~i~W~~~~~~i~~~--------~~~~~~~~~L~i~~v~~~d~G~Y  138 (633)
                      ..|.|....   .+.+|+.++|.|.+.+ .|.+  .|.|++++..+...        .........|++.....+|...|
T Consensus         3 ~~P~I~~~~---~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~l   79 (109)
T d1vcaa1           3 KDPEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVL   79 (109)
T ss_dssp             SCCEEEESS---CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEE
T ss_pred             CCCEEecCC---CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEE
Confidence            456665443   3789999999999964 6654  68999998876311        01111124577765556666699


Q ss_pred             EEEEEeCCce-------EEEEEEEEEEee
Q psy15127        139 ICDVENLVGS-------ISLRASLTVHLL  160 (633)
Q Consensus       139 ~C~~~n~~g~-------~s~~~~l~V~~~  160 (633)
                      +|+|++..+.       .+....|.|..+
T Consensus        80 tC~a~~~~~~~~~~~~~~~t~~~L~V~~~  108 (109)
T d1vcaa1          80 VCRAKLHIDEMDSVPTVRQAVKELQVYIS  108 (109)
T ss_dssp             EEEEEECSCCCTTSCSEEEEEEECCEECC
T ss_pred             EEEEEcCcCCccccccccceeEEeEEEeC
Confidence            9999977543       244555777664

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.19  E-value=3.1e-06  Score=66.54  Aligned_cols=72  Identities=28%  Similarity=0.415  Sum_probs=51.7

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEecc-CCCeEEEEeC--CccC----------------CCCCeEEcc---c--ceEEEcc
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGD-PLPTILWRRD--DGKM----------------PTGRAKILD---D--RSLQIEN  129 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~-p~p~i~W~~~--~~~i----------------~~~~~~~~~---~--~~L~i~~  129 (633)
                      ++..|..+.+.+|++++|.|...+. ....+.|||.  |...                ..+++....   +  ..|+|.+
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP   82 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence            5667888999999999999998543 4567999982  2211                112333221   1  3699999


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy15127        130 VGPQDEGLYICDVENL  145 (633)
Q Consensus       130 v~~~d~G~Y~C~~~n~  145 (633)
                      ++.+|+|.|.|.+...
T Consensus        83 ~~~~Dsg~YyCa~~~~   98 (116)
T d1tvda_          83 VRTEDSATYYCAFTLP   98 (116)
T ss_dssp             CCGGGCEEEEEEEECT
T ss_pred             ccccccccceeeEecC
Confidence            9999999999987654

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.19  E-value=1.8e-06  Score=67.64  Aligned_cols=73  Identities=22%  Similarity=0.421  Sum_probs=52.6

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC-------C------CCCeEEc-----ccceEEEccCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM-------P------TGRAKIL-----DDRSLQIENVGPQ  133 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i-------~------~~~~~~~-----~~~~L~i~~v~~~  133 (633)
                      +...|..+.+.+|++++|.|...+.....+.|||..  ...       .      .++....     .+..|+|.+++.+
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   82 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG   82 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCC
Confidence            456788899999999999999876555679999843  211       0      1111111     1247999999999


Q ss_pred             CCeEEEEEEEeCC
Q psy15127        134 DEGLYICDVENLV  146 (633)
Q Consensus       134 d~G~Y~C~~~n~~  146 (633)
                      |+|.|.|.+....
T Consensus        83 Dsg~YyCa~~~~~   95 (113)
T d2bnqd1          83 DSATYLCAVRPTS   95 (113)
T ss_dssp             GCEEEEEEEEESS
T ss_pred             CCcEEeEeEecCC
Confidence            9999999987543

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.18  E-value=3.7e-06  Score=64.70  Aligned_cols=71  Identities=17%  Similarity=0.247  Sum_probs=51.2

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC----------C---CCCeEEc---ccceEEEccCCCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM----------P---TGRAKIL---DDRSLQIENVGPQDE  135 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i----------~---~~~~~~~---~~~~L~i~~v~~~d~  135 (633)
                      ++..|..+.+.+|++++|.|...+.-...+.||+..  +..          .   ..++...   ....|.|.+++.+|+
T Consensus         3 ltQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   82 (106)
T d1op3k1           3 MTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDF   82 (106)
T ss_dssp             EEEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCC
Confidence            456688999999999999999875555579999853  211          0   1122221   124799999999999


Q ss_pred             eEEEEEEEe
Q psy15127        136 GLYICDVEN  144 (633)
Q Consensus       136 G~Y~C~~~n  144 (633)
                      |.|.|.+..
T Consensus        83 a~YyCa~~~   91 (106)
T d1op3k1          83 ATYHCQHYA   91 (106)
T ss_dssp             SEEEEEEEC
T ss_pred             CcEeeeeCC
Confidence            999998653

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.17  E-value=1.5e-06  Score=66.70  Aligned_cols=69  Identities=20%  Similarity=0.344  Sum_probs=48.7

Q ss_pred             CCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccCC-------------CCCeEEc---ccceEEEccCCCCCCeEE
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKMP-------------TGRAKIL---DDRSLQIENVGPQDEGLY  138 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i~-------------~~~~~~~---~~~~L~i~~v~~~d~G~Y  138 (633)
                      +|+.+.+.+|++++|.|.........+.|||..  ....             ..+....   ....|.|.+++.+|+|.|
T Consensus         4 Qp~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   83 (103)
T d8faba1           4 QPPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADY   83 (103)
T ss_dssp             CCSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEE
T ss_pred             CCCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceE
Confidence            466889999999999998865545578999843  2110             1111111   125799999999999999


Q ss_pred             EEEEEeC
Q psy15127        139 ICDVENL  145 (633)
Q Consensus       139 ~C~~~n~  145 (633)
                      .|.+...
T Consensus        84 yCA~~~~   90 (103)
T d8faba1          84 YCQAWDN   90 (103)
T ss_dssp             EEEEEET
T ss_pred             EeeecCC
Confidence            9986543

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.16  E-value=4.4e-06  Score=65.62  Aligned_cols=71  Identities=17%  Similarity=0.319  Sum_probs=50.1

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC--CccC-------CCCC-------eEE--c---ccceEEEccCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD--DGKM-------PTGR-------AKI--L---DDRSLQIENVGP  132 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~--~~~i-------~~~~-------~~~--~---~~~~L~i~~v~~  132 (633)
                      ++..|..+.+.+|++++|.|.........+.|||.  +...       ....       ...  .   .+..|+|.+++.
T Consensus         3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1i9ea_           3 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHW   82 (115)
T ss_dssp             EECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccc
Confidence            45566778999999999999987655667899983  3211       0110       011  1   124799999999


Q ss_pred             CCCeEEEEEEEe
Q psy15127        133 QDEGLYICDVEN  144 (633)
Q Consensus       133 ~d~G~Y~C~~~n  144 (633)
                      +|+|.|.|.+..
T Consensus        83 ~Dsg~YyCa~~~   94 (115)
T d1i9ea_          83 SDSAVYFCAVSG   94 (115)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             cccceecccccC
Confidence            999999998764

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=3.2e-06  Score=64.35  Aligned_cols=83  Identities=14%  Similarity=0.128  Sum_probs=59.5

Q ss_pred             CCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeee----eceEEEecCCCCCeEEEEEE
Q psy15127        412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT----STSITVSDLKPDTSYMFIVR  487 (633)
Q Consensus       412 ~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~----~~~~~i~~L~p~~~Y~~~v~  487 (633)
                      +|.++++... .....|+|+||...+    ....|.|+|+..+. ..|.....-..    ...+.+.+|.++..|.|||+
T Consensus         6 ~P~nv~~~s~-n~~~~L~W~pp~~~g----~~~~Y~Ve~~~~~~-~~W~~v~~c~~~t~~~~~~~~~~l~~~~~Y~fRVr   79 (99)
T d1y6kr1           6 SPPSVWFEAE-FFHHILHWTPIPQQS----ESTCYEVALLRYGI-ESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARVR   79 (99)
T ss_dssp             CCSCEEEEEE-TTEEEEEECCCTTCC----TTCEEEEEEEETTS-CCCEEEEEEESSSEEECGGGGTTGGGSSCEEEEEE
T ss_pred             CCCcceEEEE-CCEEEEEEcCCCCcC----CCCEEEEEEEECCC-cceEEEEeeccccccceeeeeeecCCCCEEEEEEE
Confidence            3667776544 456779999988653    34679999987653 56765533222    23345678999999999999


Q ss_pred             EEeccccCCCCCC
Q psy15127        488 AENSHGLGIPSPV  500 (633)
Q Consensus       488 a~n~~G~g~~s~~  500 (633)
                      |.|..|.|.++..
T Consensus        80 A~n~~g~S~Ws~t   92 (99)
T d1y6kr1          80 AVDGSRHSQWTVT   92 (99)
T ss_dssp             EEETTEECCCEEC
T ss_pred             EEcCCCcCCCccc
Confidence            9999999988643

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.16  E-value=2.5e-06  Score=65.59  Aligned_cols=71  Identities=23%  Similarity=0.282  Sum_probs=51.2

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC--CccC-------------CCCCeEEc---ccceEEEccCCCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD--DGKM-------------PTGRAKIL---DDRSLQIENVGPQDE  135 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~--~~~i-------------~~~~~~~~---~~~~L~i~~v~~~d~  135 (633)
                      ++..|..+.+.+|++++|.|.........+.|||.  |...             ...++...   .+..|+|.+++.+|+
T Consensus         4 ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (106)
T d1i8ka_           4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDV   83 (106)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccC
Confidence            45668888899999999999886555557999974  3321             11222221   134799999999999


Q ss_pred             eEEEEEEEe
Q psy15127        136 GLYICDVEN  144 (633)
Q Consensus       136 G~Y~C~~~n  144 (633)
                      |.|.|.+..
T Consensus        84 a~YyCa~~~   92 (106)
T d1i8ka_          84 GDYYCLQSF   92 (106)
T ss_dssp             EEEEEEECS
T ss_pred             EEEeEecCc
Confidence            999998643

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=9.5e-06  Score=64.81  Aligned_cols=87  Identities=17%  Similarity=0.317  Sum_probs=59.1

Q ss_pred             ceeEEecCCceEEEEEEEeeecC----CeeEEEECCE-------EEE---------eccCCccceEEEcc------CceE
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPL----PSVFWTQEGS-------QVL---------MFPGNAYGHLHVTQ------EGTL  300 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~----~~v~W~~~g~-------~~~---------~~~~~~~~~~~~~~------~~~l  300 (633)
                      ...+...+|++++|.|.....+.    ..+.|++...       .+.         .....-..|.....      +.+|
T Consensus        11 ~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL   90 (124)
T d1eaja_          11 EEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASI   90 (124)
T ss_dssp             EEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCE
T ss_pred             CceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEE
Confidence            34566778999999999876543    2578986311       000         00011123343322      2379


Q ss_pred             EEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127        301 RIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR  333 (633)
Q Consensus       301 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  333 (633)
                      .|.+++.+|+|.|.|.+.+..|..+..+.|.|.
T Consensus        91 ~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          91 NVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            999999999999999999998888888888775

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.13  E-value=4e-06  Score=64.60  Aligned_cols=69  Identities=20%  Similarity=0.427  Sum_probs=49.6

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC-------------CCCCeEEcc---cceEEEccCCCCCCe
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM-------------PTGRAKILD---DRSLQIENVGPQDEG  136 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i-------------~~~~~~~~~---~~~L~i~~v~~~d~G  136 (633)
                      +.+|+.+.+.+|++++|.|...+.....+.|||..  ...             ...++....   +..|.|.+++.+|+|
T Consensus         4 ltQp~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa   83 (106)
T d1lk3l1           4 LTQPPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTA   83 (106)
T ss_dssp             EECCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeeCCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCC
Confidence            34567889999999999999976555679999842  211             012222222   247999999999999


Q ss_pred             EEEEEEE
Q psy15127        137 LYICDVE  143 (633)
Q Consensus       137 ~Y~C~~~  143 (633)
                      .|.|.+.
T Consensus        84 ~YyCa~~   90 (106)
T d1lk3l1          84 IYFCQQS   90 (106)
T ss_dssp             EEEEEEC
T ss_pred             Ccccccc
Confidence            9999654

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.11  E-value=2.8e-06  Score=65.55  Aligned_cols=70  Identities=20%  Similarity=0.358  Sum_probs=50.8

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC-------------CCCCeEEc---ccceEEEccCCCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM-------------PTGRAKIL---DDRSLQIENVGPQDE  135 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i-------------~~~~~~~~---~~~~L~i~~v~~~d~  135 (633)
                      ++..|..+.+.+|++++|.|.........+.|||..  ...             ...+....   .+..|+|.+++.+|+
T Consensus         4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   83 (107)
T d1tjgl1           4 LTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDF   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcC
Confidence            456688999999999999999875555689999843  211             01122221   124799999999999


Q ss_pred             eEEEEEEE
Q psy15127        136 GLYICDVE  143 (633)
Q Consensus       136 G~Y~C~~~  143 (633)
                      |.|.|.+.
T Consensus        84 A~YyCa~~   91 (107)
T d1tjgl1          84 ATYYCQQL   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             ceEEEEEC
Confidence            99999754

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.11  E-value=4.4e-06  Score=65.61  Aligned_cols=72  Identities=17%  Similarity=0.250  Sum_probs=51.5

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC-------CC-------CCeEEc-c----cceEEEccCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM-------PT-------GRAKIL-D----DRSLQIENVGP  132 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i-------~~-------~~~~~~-~----~~~L~i~~v~~  132 (633)
                      ++..|..+.+.+|++++|.|.........+.|||..  +..       ..       .+.... .    ...|+|.+++.
T Consensus         3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1j8hd1           3 VTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHM   82 (115)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCG
T ss_pred             EEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccc
Confidence            456688899999999999999876555679999842  211       00       111111 1    23699999999


Q ss_pred             CCCeEEEEEEEeC
Q psy15127        133 QDEGLYICDVENL  145 (633)
Q Consensus       133 ~d~G~Y~C~~~n~  145 (633)
                      +|+|.|.|.+...
T Consensus        83 ~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          83 SDAAEYFCAVSES   95 (115)
T ss_dssp             GGCEEEEEEEESS
T ss_pred             cCCccceeeecCC
Confidence            9999999998754

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.10  E-value=5.7e-06  Score=65.15  Aligned_cols=72  Identities=25%  Similarity=0.450  Sum_probs=52.2

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC--CccC------------------CCCCeEEcc----cceEEEcc
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD--DGKM------------------PTGRAKILD----DRSLQIEN  129 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~--~~~i------------------~~~~~~~~~----~~~L~i~~  129 (633)
                      +...|....+.+|++++|.|...+.....+.|||.  |+.+                  ...++....    ...|+|.+
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~   83 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTS   83 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECS
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccc
Confidence            55667888899999999999987655668999984  3211                  012222221    13699999


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy15127        130 VGPQDEGLYICDVENL  145 (633)
Q Consensus       130 v~~~d~G~Y~C~~~n~  145 (633)
                      ++.+|+|.|.|.+...
T Consensus        84 ~~~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          84 AHPEDSGFYVCSALAG   99 (118)
T ss_dssp             CCGGGCEEEEEEEECS
T ss_pred             cccccCceEEEEEecC
Confidence            9999999999998643

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1.2e-05  Score=62.20  Aligned_cols=68  Identities=16%  Similarity=0.290  Sum_probs=46.4

Q ss_pred             CCceEEEcCCeEEEEEEEecc--CCCeEEEEeCCc--c---C----------CCCCeEEcc-----cceEEEccCCCCCC
Q psy15127         78 PSDATVLSGSVVEFVCRVGGD--PLPTILWRRDDG--K---M----------PTGRAKILD-----DRSLQIENVGPQDE  135 (633)
Q Consensus        78 ~~~~~~~~G~~~~L~C~~~~~--p~p~i~W~~~~~--~---i----------~~~~~~~~~-----~~~L~i~~v~~~d~  135 (633)
                      ++.+.+.+|++++|.|.....  ....+.|+|...  .   +          ..++.....     ...|.|.+++.+|+
T Consensus         3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~Ds   82 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDS   82 (108)
T ss_dssp             CEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCC
Confidence            455788999999999987533  233578988421  1   1          112333221     23799999999999


Q ss_pred             eEEEEEEEeC
Q psy15127        136 GLYICDVENL  145 (633)
Q Consensus       136 G~Y~C~~~n~  145 (633)
                      |.|.|.+...
T Consensus        83 G~Y~C~v~~~   92 (108)
T d1hkfa_          83 GHYWCRIYRP   92 (108)
T ss_dssp             EEEEEEEECT
T ss_pred             EEEEEEEecC
Confidence            9999998744

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=4.5e-06  Score=66.43  Aligned_cols=71  Identities=23%  Similarity=0.307  Sum_probs=49.6

Q ss_pred             eCCCceEEEcCCeEEEEEEEecc-------CCCeEEEEeCCccC---------------C---CCCeEEcc-----cceE
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGD-------PLPTILWRRDDGKM---------------P---TGRAKILD-----DRSL  125 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~-------p~p~i~W~~~~~~i---------------~---~~~~~~~~-----~~~L  125 (633)
                      ..|.++.+.+|++|+|.|.....       ....+.|++....-               .   .++..+..     +.+|
T Consensus         6 ~~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   85 (121)
T d2g5ra1           6 TMQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTL   85 (121)
T ss_dssp             ECCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCE
T ss_pred             EeCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEE
Confidence            45778999999999999998521       11357898864311               0   12344332     3479


Q ss_pred             EEccCCCCCCeEEEEEEEeCC
Q psy15127        126 QIENVGPQDEGLYICDVENLV  146 (633)
Q Consensus       126 ~i~~v~~~d~G~Y~C~~~n~~  146 (633)
                      .|.+++.+|+|.|.|.+....
T Consensus        86 ~I~~v~~~DsG~Y~C~v~~~~  106 (121)
T d2g5ra1          86 SIRDARMSDAGRYFFRMEKGN  106 (121)
T ss_dssp             EECSCCGGGCEEEEEEEEETT
T ss_pred             EECCCChHHCEEEEEEEEeCC
Confidence            999999999999999997543

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.07  E-value=3.2e-06  Score=65.20  Aligned_cols=70  Identities=26%  Similarity=0.420  Sum_probs=50.3

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC----------C---CCCeE---EcccceEEEccCCCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM----------P---TGRAK---ILDDRSLQIENVGPQDE  135 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i----------~---~~~~~---~~~~~~L~i~~v~~~d~  135 (633)
                      ++..|..+.+.+|++++|.|.........+.||+..  +..          .   ..++.   ...+..|.|.+++.+|+
T Consensus         4 ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d3cx5k1           4 LTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDI   83 (107)
T ss_dssp             EEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCC
T ss_pred             EECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCC
Confidence            456688889999999999999876555579999843  211          0   11111   11235899999999999


Q ss_pred             eEEEEEEE
Q psy15127        136 GLYICDVE  143 (633)
Q Consensus       136 G~Y~C~~~  143 (633)
                      |.|.|.+.
T Consensus        84 a~YyCa~~   91 (107)
T d3cx5k1          84 ATYFCQHH   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             CcEEeeeC
Confidence            99999754

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.06  E-value=5e-06  Score=64.76  Aligned_cols=71  Identities=23%  Similarity=0.417  Sum_probs=49.9

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC--CccCC-------C------CCeEEc-----ccceEEEccCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD--DGKMP-------T------GRAKIL-----DDRSLQIENVGPQ  133 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~--~~~i~-------~------~~~~~~-----~~~~L~i~~v~~~  133 (633)
                      +...|..+.+.+|++++|.|.........+.||+.  |....       .      .+....     ....|.|.+++.+
T Consensus         2 V~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (110)
T d1u3ha1           2 VRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPG   81 (110)
T ss_dssp             EECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTT
T ss_pred             cEecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCC
Confidence            34567889999999999999986544456999985  22210       0      111111     1247999999999


Q ss_pred             CCeEEEEEEEe
Q psy15127        134 DEGLYICDVEN  144 (633)
Q Consensus       134 d~G~Y~C~~~n  144 (633)
                      |+|.|.|.+..
T Consensus        82 Dsa~YyCa~~~   92 (110)
T d1u3ha1          82 DSATYFCAASA   92 (110)
T ss_dssp             SCSEEEECCEE
T ss_pred             CceeEeeeecC
Confidence            99999998763

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.05  E-value=5.7e-06  Score=63.70  Aligned_cols=70  Identities=19%  Similarity=0.252  Sum_probs=50.6

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC-------------CCCCeEEc---ccceEEEccCCCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM-------------PTGRAKIL---DDRSLQIENVGPQDE  135 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i-------------~~~~~~~~---~~~~L~i~~v~~~d~  135 (633)
                      ++..|..+.+.+|++++|.|.........+.|||..  ...             ...++...   .+..|.|.+++.+|+
T Consensus         4 ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1mexl1           4 MTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDL   83 (107)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecc
Confidence            456677889999999999999865545579999842  211             01232222   125799999999999


Q ss_pred             eEEEEEEE
Q psy15127        136 GLYICDVE  143 (633)
Q Consensus       136 G~Y~C~~~  143 (633)
                      |.|.|.+.
T Consensus        84 A~YyCa~~   91 (107)
T d1mexl1          84 AEYFCQQY   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             eeEEEeEC
Confidence            99999764

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.05  E-value=1.8e-05  Score=62.64  Aligned_cols=36  Identities=25%  Similarity=0.413  Sum_probs=25.8

Q ss_pred             ceEEEcCCCCCCCeEEEEEEEeCCc--eeEEEEEEEEE
Q psy15127        298 GTLRIQGVQKEDAGFFVCSALSVAG--STTVRAFLQVR  333 (633)
Q Consensus       298 ~~l~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l~v~  333 (633)
                      .+|.|.+++..|+|.|.|.+.+..+  .....+.|.|.
T Consensus        81 ~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          81 GSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            4799999999999999999987543  33444555553

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.04  E-value=4.7e-06  Score=64.38  Aligned_cols=70  Identities=21%  Similarity=0.363  Sum_probs=50.6

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC-------------CCCCeEEc---ccceEEEccCCCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM-------------PTGRAKIL---DDRSLQIENVGPQDE  135 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i-------------~~~~~~~~---~~~~L~i~~v~~~d~  135 (633)
                      ++..|..+.+.+|++++|.|.........+.||+..  +..             ..+++...   ....|.|.+++.+|+
T Consensus         4 ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DS   83 (109)
T d1mqkl_           4 LTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDF   83 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCC
Confidence            456688899999999999999865545579999942  211             01222221   124799999999999


Q ss_pred             eEEEEEEE
Q psy15127        136 GLYICDVE  143 (633)
Q Consensus       136 G~Y~C~~~  143 (633)
                      |.|.|.+.
T Consensus        84 a~YyCA~~   91 (109)
T d1mqkl_          84 GSYYCQHH   91 (109)
T ss_dssp             EEEEEEEC
T ss_pred             eeEEEeee
Confidence            99999875

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.04  E-value=4.5e-06  Score=65.12  Aligned_cols=71  Identities=24%  Similarity=0.346  Sum_probs=50.9

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEecc--CCCeEEEEeC--Ccc----CC-CCCeEEcc-----cceEEEccCCCCCCeEEE
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGD--PLPTILWRRD--DGK----MP-TGRAKILD-----DRSLQIENVGPQDEGLYI  139 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~--p~p~i~W~~~--~~~----i~-~~~~~~~~-----~~~L~i~~v~~~d~G~Y~  139 (633)
                      +...|..+.+.+|++++|.|.+.+.  ....+.|||.  +..    +. .+++....     ...|+|.+++.+|+|.|.
T Consensus         3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   82 (113)
T d1vesa_           3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYK   82 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEe
Confidence            4567888999999999999998643  3456999973  221    11 22322221     137999999999999999


Q ss_pred             EEEEe
Q psy15127        140 CDVEN  144 (633)
Q Consensus       140 C~~~n  144 (633)
                      |.+..
T Consensus        83 Ca~~~   87 (113)
T d1vesa_          83 CQAFY   87 (113)
T ss_dssp             EEEEE
T ss_pred             eeeec
Confidence            99853

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=5.1e-06  Score=62.42  Aligned_cols=74  Identities=20%  Similarity=0.316  Sum_probs=53.7

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCC---CCCeEEcccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP---TGRAKILDDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~---~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      .+|.+...|..+ +..|++|+|.|... .+...+.++|+|....   ...........+.|.+++.+|+|.|+|.....
T Consensus         3 PkP~Lsa~Ps~~-V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~   79 (96)
T d1ugna1           3 PKPTLWAEPGSV-ITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSD   79 (96)
T ss_dssp             CCCEEEEESCSE-EETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeECCCc-cCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeCC
Confidence            478888888754 88999999999864 4455788899886432   11101112358999999999999999987543

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=5e-06  Score=64.17  Aligned_cols=67  Identities=22%  Similarity=0.313  Sum_probs=47.5

Q ss_pred             ceEEEcCCeEEEEEEEeccC----CCeEEEEeCCccCC-------------CCCeEEcc--cceEEEccCCCCCCeEEEE
Q psy15127         80 DATVLSGSVVEFVCRVGGDP----LPTILWRRDDGKMP-------------TGRAKILD--DRSLQIENVGPQDEGLYIC  140 (633)
Q Consensus        80 ~~~~~~G~~~~L~C~~~~~p----~p~i~W~~~~~~i~-------------~~~~~~~~--~~~L~i~~v~~~d~G~Y~C  140 (633)
                      .+.+..|++++|.|......    ...+.|.+++..+.             .++.....  +.+|.|.+++.+|+|.|.|
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C   82 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEE
Confidence            46788999999999875321    12578888776431             12222222  4589999999999999999


Q ss_pred             EEEeCC
Q psy15127        141 DVENLV  146 (633)
Q Consensus       141 ~~~n~~  146 (633)
                      .+.+..
T Consensus        83 ~V~~~~   88 (105)
T d1dr9a1          83 VVLKYE   88 (105)
T ss_dssp             EEEECC
T ss_pred             EEEeCC
Confidence            997653

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.03  E-value=6e-06  Score=64.14  Aligned_cols=68  Identities=16%  Similarity=0.302  Sum_probs=47.4

Q ss_pred             CCCceEEEcCCeEEEEEEEecc-CCCeEEEEeC--CccCC-----------C--CCeEEc---ccceEEEccCCCCCCeE
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGD-PLPTILWRRD--DGKMP-----------T--GRAKIL---DDRSLQIENVGPQDEGL  137 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~-p~p~i~W~~~--~~~i~-----------~--~~~~~~---~~~~L~i~~v~~~d~G~  137 (633)
                      +|+++.+.+|++++|.|...+. ....+.|||.  |+...           .  .+....   ....|.|.+++.+|+|.
T Consensus         4 QP~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   83 (110)
T d2esvd1           4 QPPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAV   83 (110)
T ss_dssp             CCSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEE
T ss_pred             cCCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceE
Confidence            4678999999999999987543 3446899984  32210           0  011111   12469999999999999


Q ss_pred             EEEEEEe
Q psy15127        138 YICDVEN  144 (633)
Q Consensus       138 Y~C~~~n  144 (633)
                      |.|.+..
T Consensus        84 YyCa~~~   90 (110)
T d2esvd1          84 YYCIVVR   90 (110)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEeC
Confidence            9998764

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.03  E-value=5.9e-06  Score=63.92  Aligned_cols=70  Identities=19%  Similarity=0.339  Sum_probs=49.5

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEecc-CCCeEEEEeCC--ccC-------------CCCCeEEc---ccceEEEccCCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGD-PLPTILWRRDD--GKM-------------PTGRAKIL---DDRSLQIENVGPQD  134 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~-p~p~i~W~~~~--~~i-------------~~~~~~~~---~~~~L~i~~v~~~d  134 (633)
                      ++..|..+.+.+|++++|.|..... ....+.|||..  ...             ..+++...   ....|.|.+++.+|
T Consensus         4 ltQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~D   83 (108)
T d2fx7l1           4 LTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPED   83 (108)
T ss_dssp             EECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecc
Confidence            4566888899999999999987543 34468999853  211             01122221   12469999999999


Q ss_pred             CeEEEEEEE
Q psy15127        135 EGLYICDVE  143 (633)
Q Consensus       135 ~G~Y~C~~~  143 (633)
                      +|.|.|.+.
T Consensus        84 sa~YyCa~~   92 (108)
T d2fx7l1          84 FAVYYCQQY   92 (108)
T ss_dssp             CSEEEEEEC
T ss_pred             cEEEeeecC
Confidence            999999874

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.02  E-value=1.7e-05  Score=59.87  Aligned_cols=75  Identities=19%  Similarity=0.181  Sum_probs=54.0

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCC---eEEcccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR---AKILDDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      ..+|.+...|.. .+..|++|+|.|... .+...+.|+|+|.......   ........+.|..+...|+|.|+|.....
T Consensus         4 ~pkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2           4 YEKPSLSAQPGP-TVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             SCCCEEEEESCS-EECTTCEEEEEEEES-SCCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             CCCCEEEEeCCC-cccCCCeEEEEECCC-CCccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecC
Confidence            457888888855 589999999999875 3456799999987543211   11111235788889999999999986543

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=7.5e-06  Score=64.76  Aligned_cols=70  Identities=29%  Similarity=0.414  Sum_probs=49.1

Q ss_pred             eCCCceEEEcCCeEEEEEEEecc---C---CCeEEEEeCCccC----------------CCCCeEEcc-----cceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGD---P---LPTILWRRDDGKM----------------PTGRAKILD-----DRSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~---p---~p~i~W~~~~~~i----------------~~~~~~~~~-----~~~L~i~  128 (633)
                      ..|..+.+.+|++|+|.|.+...   +   ...+.|++.....                ..++.....     +.+|+|.
T Consensus         5 ~~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~   84 (118)
T d1qfoa_           5 SSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLK   84 (118)
T ss_dssp             ECCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEEC
T ss_pred             ECCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEEC
Confidence            45788999999999999998521   1   1236777754321                022333332     3479999


Q ss_pred             cCCCCCCeEEEEEEEeC
Q psy15127        129 NVGPQDEGLYICDVENL  145 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~n~  145 (633)
                      +++.+|+|.|.|.+...
T Consensus        85 ~v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          85 DLKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             SCCGGGCEEEEEEEECC
T ss_pred             CCChhHCEEEEEEEEeC
Confidence            99999999999999754

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1e-05  Score=62.95  Aligned_cols=78  Identities=21%  Similarity=0.486  Sum_probs=48.2

Q ss_pred             eEEEcCCeEEEEEEEeccC---CCe--EEEEeCCccC-----C------------CCCeEE-cccceEEEccCCCCCCeE
Q psy15127         81 ATVLSGSVVEFVCRVGGDP---LPT--ILWRRDDGKM-----P------------TGRAKI-LDDRSLQIENVGPQDEGL  137 (633)
Q Consensus        81 ~~~~~G~~~~L~C~~~~~p---~p~--i~W~~~~~~i-----~------------~~~~~~-~~~~~L~i~~v~~~d~G~  137 (633)
                      +.+..|++++|.|.+...+   ...  ..|.+++...     .            .++... ..+.+|+|.+++.+|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            5688999999999985322   122  3444443321     0            011111 234689999999999999


Q ss_pred             EEEEEEeCC--ce---EEEEEEEEEE
Q psy15127        138 YICDVENLV--GS---ISLRASLTVH  158 (633)
Q Consensus       138 Y~C~~~n~~--g~---~s~~~~l~V~  158 (633)
                      |.|.+....  +.   ....+.|.|.
T Consensus        84 Y~C~V~~~~~~~~~~~~~~~~~L~V~  109 (110)
T d1ncna_          84 YQCIIHHKKPTGMIRIHQMNSELSVL  109 (110)
T ss_dssp             EEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred             EEEEEEecCCCceEEEEcceEEEEEE
Confidence            999996443  32   2445556554

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=6.6e-06  Score=64.34  Aligned_cols=72  Identities=24%  Similarity=0.285  Sum_probs=50.8

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEecc-CCCeEEEEeCC--ccCC-------------------CCCeEEcc---cceEEEc
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGD-PLPTILWRRDD--GKMP-------------------TGRAKILD---DRSLQIE  128 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~-p~p~i~W~~~~--~~i~-------------------~~~~~~~~---~~~L~i~  128 (633)
                      +...|.+..+.+|++++|.|.+.+. ....+.|||..  ....                   ..++....   ...|+|.
T Consensus         3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~   82 (114)
T d1akjd_           3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLS   82 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEES
T ss_pred             eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEc
Confidence            4567888899999999999998643 34569999943  1110                   11222111   2369999


Q ss_pred             cCCCCCCeEEEEEEEeC
Q psy15127        129 NVGPQDEGLYICDVENL  145 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~n~  145 (633)
                      +++.+|+|.|.|.+...
T Consensus        83 ~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          83 DFRRENEGYYFCSALSN   99 (114)
T ss_dssp             SCCGGGCEEEEEEEEET
T ss_pred             cCCCCCCEEEeEeEcCC
Confidence            99999999999998643

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.01  E-value=6.1e-06  Score=63.57  Aligned_cols=71  Identities=23%  Similarity=0.314  Sum_probs=51.1

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC-------------CCCCeEEc---ccceEEEccCCCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM-------------PTGRAKIL---DDRSLQIENVGPQDE  135 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i-------------~~~~~~~~---~~~~L~i~~v~~~d~  135 (633)
                      ++..|..+.+.+|++++|.|.........+.||+..  ...             ..+++...   .+..|.|.+++.+|+
T Consensus         4 ~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1d5il1           4 MTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDM   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCC
Confidence            446688889999999999999876555678999842  211             01233222   125799999999999


Q ss_pred             eEEEEEEEe
Q psy15127        136 GLYICDVEN  144 (633)
Q Consensus       136 G~Y~C~~~n  144 (633)
                      |.|.|....
T Consensus        84 a~YyCa~~~   92 (107)
T d1d5il1          84 GIYYCLQYD   92 (107)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEeeecc
Confidence            999997643

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.01  E-value=1.8e-05  Score=61.36  Aligned_cols=72  Identities=13%  Similarity=0.251  Sum_probs=51.4

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC--CccC-------C------CCCeEEc-----ccceEEEccCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD--DGKM-------P------TGRAKIL-----DDRSLQIENVGPQ  133 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~--~~~i-------~------~~~~~~~-----~~~~L~i~~v~~~  133 (633)
                      ++..|..+.+.+|++++|.|.........+.|||.  |+.+       .      ..++...     ....|.|.+++.+
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~   82 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQES   82 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGG
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcC
Confidence            45678889999999999999876544557999984  3211       0      1122111     1246999999999


Q ss_pred             CCeEEEEEEEeC
Q psy15127        134 DEGLYICDVENL  145 (633)
Q Consensus       134 d~G~Y~C~~~n~  145 (633)
                      |+|.|.|.+...
T Consensus        83 Dsa~YyCA~~~~   94 (110)
T d1ac6a_          83 DSAVYYCALSGG   94 (110)
T ss_dssp             GCEEEEEEEEET
T ss_pred             CCcccceeecCC
Confidence            999999987654

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.99  E-value=8.2e-06  Score=63.26  Aligned_cols=71  Identities=23%  Similarity=0.360  Sum_probs=50.3

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEecc--CCCeEEEEeC--Ccc----CC-CCCeEEcc-----cceEEEccCCCCCCeEEE
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGD--PLPTILWRRD--DGK----MP-TGRAKILD-----DRSLQIENVGPQDEGLYI  139 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~--p~p~i~W~~~--~~~----i~-~~~~~~~~-----~~~L~i~~v~~~d~G~Y~  139 (633)
                      +...|..+.+.+|++++|.|...+.  ....+.|||.  |..    +. .++.....     ...|+|.+++.+|+|.|.
T Consensus         2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   81 (112)
T d1sq2n_           2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYR   81 (112)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEe
Confidence            4566788889999999999988543  3457999983  221    11 22322211     237999999999999999


Q ss_pred             EEEEe
Q psy15127        140 CDVEN  144 (633)
Q Consensus       140 C~~~n  144 (633)
                      |.+..
T Consensus        82 CA~~~   86 (112)
T d1sq2n_          82 CGLGV   86 (112)
T ss_dssp             EEECB
T ss_pred             EEEec
Confidence            98754

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.99  E-value=1e-05  Score=62.95  Aligned_cols=71  Identities=20%  Similarity=0.365  Sum_probs=51.3

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC--CccC-------C------CCCeEEcc-----cceEEEccCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD--DGKM-------P------TGRAKILD-----DRSLQIENVGPQ  133 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~--~~~i-------~------~~~~~~~~-----~~~L~i~~v~~~  133 (633)
                      +...|+.+.+.+|++++|.|.........+.||+.  |+..       .      .+++....     ...|.|.+++.+
T Consensus         3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (111)
T d1bd2d1           3 VKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPG   82 (111)
T ss_dssp             EECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             eEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCccc
Confidence            45668888999999999999987665667999984  3221       0      11222111     247999999999


Q ss_pred             CCeEEEEEEEe
Q psy15127        134 DEGLYICDVEN  144 (633)
Q Consensus       134 d~G~Y~C~~~n  144 (633)
                      |+|.|.|.+..
T Consensus        83 Dsa~YyCa~~~   93 (111)
T d1bd2d1          83 DSAVYFCAAME   93 (111)
T ss_dssp             GCEEEEEEEES
T ss_pred             ccEEEEeeccC
Confidence            99999998764

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.98  E-value=7.2e-06  Score=64.26  Aligned_cols=72  Identities=17%  Similarity=0.356  Sum_probs=50.0

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEec-cCCCeEEEEeC--CccCC--------C------CCeEEc--c---cceEEEccCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGG-DPLPTILWRRD--DGKMP--------T------GRAKIL--D---DRSLQIENVG  131 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~-~p~p~i~W~~~--~~~i~--------~------~~~~~~--~---~~~L~i~~v~  131 (633)
                      ++..|..+.+.+|++++|.|.... .....+.|||.  +....        .      .+....  .   +..|.|.+++
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ   82 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccc
Confidence            456688889999999999998753 33456899983  22210        0      111111  1   2479999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy15127        132 PQDEGLYICDVENL  145 (633)
Q Consensus       132 ~~d~G~Y~C~~~n~  145 (633)
                      .+|+|.|.|.+...
T Consensus        83 ~~Dsg~YyCa~~~~   96 (114)
T d2ak4d1          83 VVDSAVYFCALSGF   96 (114)
T ss_dssp             GGGCEEEEEEEECS
T ss_pred             cccCCCceEeCCCC
Confidence            99999999987654

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.96  E-value=7.1e-06  Score=62.91  Aligned_cols=69  Identities=17%  Similarity=0.303  Sum_probs=48.4

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCc--cC----------C---CCCeEEc---ccceEEEccCCCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG--KM----------P---TGRAKIL---DDRSLQIENVGPQDE  135 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~--~i----------~---~~~~~~~---~~~~L~i~~v~~~d~  135 (633)
                      ++..|..+.+.+|++++|.|..... ...+.||+...  ..          .   ..++...   .+..|.|.+++.+|+
T Consensus         3 vtQsP~~l~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   81 (104)
T d1yqvl1           3 LTQSPAIMSASPGEKVTMTCSASSS-VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDA   81 (104)
T ss_dssp             EEEESSEEEECTTCCEEEEEEESSC-CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCC-CCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccC
Confidence            4566888999999999999987533 34589998532  11          0   1111111   124799999999999


Q ss_pred             eEEEEEEE
Q psy15127        136 GLYICDVE  143 (633)
Q Consensus       136 G~Y~C~~~  143 (633)
                      |.|.|...
T Consensus        82 a~YyCa~~   89 (104)
T d1yqvl1          82 ATYYCQQW   89 (104)
T ss_dssp             EEEEEEEC
T ss_pred             CeEEEEec
Confidence            99999754

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.95  E-value=1.1e-05  Score=62.61  Aligned_cols=69  Identities=22%  Similarity=0.365  Sum_probs=49.0

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCCc--cC-------------CCCCeEEc---ccceEEEccCCCCCC
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDDG--KM-------------PTGRAKIL---DDRSLQIENVGPQDE  135 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~~--~i-------------~~~~~~~~---~~~~L~i~~v~~~d~  135 (633)
                      .+|+.+.+.+|++++|.|.+.+..  ...+.||+...  ..             ..+++...   .+..|.|.+++.+|+
T Consensus         5 tQ~ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Ds   84 (114)
T d2rhea_           5 TQPPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDE   84 (114)
T ss_dssp             BCCSEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             ccCCcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccC
Confidence            445678999999999999986542  45699998542  11             01222222   135799999999999


Q ss_pred             eEEEEEEEe
Q psy15127        136 GLYICDVEN  144 (633)
Q Consensus       136 G~Y~C~~~n  144 (633)
                      |.|.|.+..
T Consensus        85 A~YyCA~~~   93 (114)
T d2rhea_          85 ADYYCAAWN   93 (114)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEEEeecC
Confidence            999998764

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.95  E-value=1.6e-05  Score=61.80  Aligned_cols=70  Identities=21%  Similarity=0.336  Sum_probs=48.3

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEecc------CCCeEEEEeC--CccC-------------CCCCeEEc---ccceEEEcc
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGD------PLPTILWRRD--DGKM-------------PTGRAKIL---DDRSLQIEN  129 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~------p~p~i~W~~~--~~~i-------------~~~~~~~~---~~~~L~i~~  129 (633)
                      ++..|..+.+.+|++++|.|.+.+.      ....+.|||.  |...             ..++....   ....|.|.+
T Consensus         4 ~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~   83 (113)
T d1q9ra1           4 MSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITS   83 (113)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESS
T ss_pred             EEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecc
Confidence            4466888999999999999987532      1234999984  3211             01122211   124799999


Q ss_pred             CCCCCCeEEEEEEE
Q psy15127        130 VGPQDEGLYICDVE  143 (633)
Q Consensus       130 v~~~d~G~Y~C~~~  143 (633)
                      ++.+|+|.|.|.+.
T Consensus        84 l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          84 VQAEDLAVYYCKQS   97 (113)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cccCCCeEEEeccc
Confidence            99999999999864

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.95  E-value=1.2e-05  Score=62.51  Aligned_cols=71  Identities=18%  Similarity=0.302  Sum_probs=49.9

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCC--ccC-------------CCCCeEEcc-----cceEEEccCCC
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDD--GKM-------------PTGRAKILD-----DRSLQIENVGP  132 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~--~~i-------------~~~~~~~~~-----~~~L~i~~v~~  132 (633)
                      +.+|+.+.+.+|++++|.|...+..  ...+.|+|..  ..+             ..++.....     ...|.|.+++.
T Consensus         4 ltQP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~   83 (111)
T d1cd0a_           4 LNQPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKT   83 (111)
T ss_dssp             EECCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCG
T ss_pred             EecCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCc
Confidence            4567889999999999999986543  2358999843  221             012222221     24799999999


Q ss_pred             CCCeEEEEEEEeC
Q psy15127        133 QDEGLYICDVENL  145 (633)
Q Consensus       133 ~d~G~Y~C~~~n~  145 (633)
                      +|+|.|.|.....
T Consensus        84 ~Dsa~YyCA~~~~   96 (111)
T d1cd0a_          84 EDEADYYCQSYDA   96 (111)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             ccCcEEEEeeccC
Confidence            9999999986543

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.95  E-value=2e-05  Score=60.95  Aligned_cols=71  Identities=18%  Similarity=0.274  Sum_probs=49.2

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEecc-C---CCeEEEEeC--CccC-------------CCCCeEEc---ccceEEEccCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGD-P---LPTILWRRD--DGKM-------------PTGRAKIL---DDRSLQIENVG  131 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~-p---~p~i~W~~~--~~~i-------------~~~~~~~~---~~~~L~i~~v~  131 (633)
                      ++..|..+.+.+|++++|.|.+.+. .   ...+.||+.  |+..             ...++...   .+..|+|.+++
T Consensus         4 ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~   83 (111)
T d2gsia1           4 LTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVE   83 (111)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhccccccc
Confidence            4566888999999999999987532 1   224899984  3221             01233222   12479999999


Q ss_pred             CCCCeEEEEEEEe
Q psy15127        132 PQDEGLYICDVEN  144 (633)
Q Consensus       132 ~~d~G~Y~C~~~n  144 (633)
                      .+|+|.|.|.+..
T Consensus        84 ~~DsA~YyCa~~~   96 (111)
T d2gsia1          84 EEDAATYYCSHIR   96 (111)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             ccCCceEEEEECC
Confidence            9999999997643

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.94  E-value=1.5e-05  Score=61.92  Aligned_cols=69  Identities=20%  Similarity=0.417  Sum_probs=48.5

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC--CccC-----------------CCCCeEEcc----cceEEEccCC
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD--DGKM-----------------PTGRAKILD----DRSLQIENVG  131 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~--~~~i-----------------~~~~~~~~~----~~~L~i~~v~  131 (633)
                      ...|..+.+.+|++++|.|...+ ....+.|||.  |...                 ...++....    ...|+|.+++
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~   81 (111)
T d2esve1           3 TQFPSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAE   81 (111)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCC
T ss_pred             EECCCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcc
Confidence            45578889999999999998643 2457999984  3211                 112222222    1479999999


Q ss_pred             CCCCeEEEEEEEe
Q psy15127        132 PQDEGLYICDVEN  144 (633)
Q Consensus       132 ~~d~G~Y~C~~~n  144 (633)
                      .+|+|.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (111)
T d2esve1          82 LEDSGVYFCASSQ   94 (111)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             cCCCceEEEeeeC
Confidence            9999999998653

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.93  E-value=9.9e-06  Score=62.68  Aligned_cols=71  Identities=20%  Similarity=0.349  Sum_probs=50.8

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC-------------CCCCeEEcc---cceEEEccCCCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM-------------PTGRAKILD---DRSLQIENVGPQDE  135 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i-------------~~~~~~~~~---~~~L~i~~v~~~d~  135 (633)
                      ++..|..+.+.+|++++|.|...+.-...+.||+..  +..             ...++....   +..|+|.+++.+|+
T Consensus         6 ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Ds   85 (109)
T d1bwwa_           6 MTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDI   85 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcC
Confidence            455688899999999999999876545578999842  211             012222211   24799999999999


Q ss_pred             eEEEEEEEe
Q psy15127        136 GLYICDVEN  144 (633)
Q Consensus       136 G~Y~C~~~n  144 (633)
                      |.|.|.+..
T Consensus        86 a~YyCA~~~   94 (109)
T d1bwwa_          86 ATYYCQQYQ   94 (109)
T ss_dssp             EEEEEEECS
T ss_pred             ceEEEeecC
Confidence            999998653

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.93  E-value=1.2e-05  Score=63.13  Aligned_cols=72  Identities=17%  Similarity=0.335  Sum_probs=50.5

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEec-cCCCeEEEEeCC--ccC---------C-----CCCeEEcc-----cceEEEccCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGG-DPLPTILWRRDD--GKM---------P-----TGRAKILD-----DRSLQIENVG  131 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~-~p~p~i~W~~~~--~~i---------~-----~~~~~~~~-----~~~L~i~~v~  131 (633)
                      ++..|..+.+.+|++|+|.|.... .....+.|||..  ..+         .     .+++....     ...|.|.+++
T Consensus         2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1fo0a_           2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ   81 (115)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCC
T ss_pred             eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCC
Confidence            456678899999999999998753 334568999843  211         0     11222211     2369999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy15127        132 PQDEGLYICDVENL  145 (633)
Q Consensus       132 ~~d~G~Y~C~~~n~  145 (633)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsa~YyCa~~~~   95 (115)
T d1fo0a_          82 IEDSAVYFCAMRGD   95 (115)
T ss_dssp             GGGCEEEEEEEECC
T ss_pred             ccccccccceeecC
Confidence            99999999998643

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.92  E-value=1.2e-05  Score=61.79  Aligned_cols=70  Identities=26%  Similarity=0.419  Sum_probs=49.7

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC--CccC------C-------CCCeEEc---ccceEEEccCCCCCCe
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD--DGKM------P-------TGRAKIL---DDRSLQIENVGPQDEG  136 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~--~~~i------~-------~~~~~~~---~~~~L~i~~v~~~d~G  136 (633)
                      +.+|+.+.+.+|++++|.|.........+.|||.  |+.+      .       .+++...   .+..|.|.+++.+|+|
T Consensus         3 ltQP~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa   82 (108)
T d1nfde1           3 LIQPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEA   82 (108)
T ss_dssp             EECCSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCS
T ss_pred             eECCCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCc
Confidence            3457889999999999999886444456899984  3211      0       1122222   1247999999999999


Q ss_pred             EEEEEEEe
Q psy15127        137 LYICDVEN  144 (633)
Q Consensus       137 ~Y~C~~~n  144 (633)
                      .|.|.+..
T Consensus        83 ~YyCA~~~   90 (108)
T d1nfde1          83 AYYCLSSY   90 (108)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEeec
Confidence            99998764

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.92  E-value=3e-06  Score=66.53  Aligned_cols=70  Identities=21%  Similarity=0.317  Sum_probs=49.3

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC-------------CCCCeEEcc---cceEEEccCCCCCCe
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM-------------PTGRAKILD---DRSLQIENVGPQDEG  136 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i-------------~~~~~~~~~---~~~L~i~~v~~~d~G  136 (633)
                      +..|..+.+.+|++++|.|...+.-...+.|||..  ...             ...++....   ...|.|.+++.+|+|
T Consensus         5 tQ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa   84 (119)
T d1f3rb2           5 TQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVA   84 (119)
T ss_dssp             CEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCS
T ss_pred             EccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCe
Confidence            35577888999999999998865544569999853  211             011222211   247999999999999


Q ss_pred             EEEEEEEe
Q psy15127        137 LYICDVEN  144 (633)
Q Consensus       137 ~Y~C~~~n  144 (633)
                      .|.|.+..
T Consensus        85 vYyCa~~~   92 (119)
T d1f3rb2          85 TYFCYQYN   92 (119)
T ss_dssp             EEEEEEES
T ss_pred             EEEeeccC
Confidence            99997653

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.91  E-value=7.1e-06  Score=63.16  Aligned_cols=71  Identities=20%  Similarity=0.318  Sum_probs=49.7

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC-------------CCCCeEEc---ccceEEEccCCCCCCe
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM-------------PTGRAKIL---DDRSLQIENVGPQDEG  136 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i-------------~~~~~~~~---~~~~L~i~~v~~~d~G  136 (633)
                      ..+|+.+.+.+|++++|.|.........+.|||..  +..             ...+....   ....|.|.+++.+|+|
T Consensus         4 ltQp~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   83 (109)
T d1w72l1           4 LTQPPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEA   83 (109)
T ss_dssp             CBCCSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eeeCCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCE
Confidence            34566889999999999998764444579999843  211             01122211   1247999999999999


Q ss_pred             EEEEEEEeC
Q psy15127        137 LYICDVENL  145 (633)
Q Consensus       137 ~Y~C~~~n~  145 (633)
                      .|.|.+...
T Consensus        84 vYyCA~~~~   92 (109)
T d1w72l1          84 DYYCQVWDS   92 (109)
T ss_dssp             EEEEEEEET
T ss_pred             EEEEEecCC
Confidence            999987643

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=2.6e-05  Score=58.67  Aligned_cols=75  Identities=19%  Similarity=0.242  Sum_probs=51.2

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEE------cccceEEEccCCCCCCeEEEEEE
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKI------LDDRSLQIENVGPQDEGLYICDV  142 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~~  142 (633)
                      +.+|.+...|..+ +..|++|+|.|... .....+.++|+|..........      .....+.|.+++.+|+|.|+|..
T Consensus         2 ~pkPsLsa~P~~~-v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y   79 (98)
T d1ugna2           2 YIKPTLSAQPSPV-VNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYA   79 (98)
T ss_dssp             SCCCEEEEESCSE-EETTCCEEEEEECS-SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEE
T ss_pred             CCCCEEEeeCCCc-cCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEee
Confidence            4578888888665 99999999999864 3455788889887543221111      11236999999999999999987


Q ss_pred             EeC
Q psy15127        143 ENL  145 (633)
Q Consensus       143 ~n~  145 (633)
                      ...
T Consensus        80 ~~~   82 (98)
T d1ugna2          80 YDS   82 (98)
T ss_dssp             ECT
T ss_pred             EcC
Confidence            543

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.89  E-value=1.6e-05  Score=62.00  Aligned_cols=71  Identities=23%  Similarity=0.503  Sum_probs=49.6

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC------CC-----CC-eEEc-----ccceEEEccCCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM------PT-----GR-AKIL-----DDRSLQIENVGPQD  134 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i------~~-----~~-~~~~-----~~~~L~i~~v~~~d  134 (633)
                      +...|..+.+.+|++++|.|...+. ...+.|||..  ...      ..     +. ....     ....|.|.+++.+|
T Consensus         4 V~Q~P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (113)
T d1h5ba_           4 VEQSPSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLED   82 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGG
T ss_pred             eEECCCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhH
Confidence            4566888999999999999998643 4579999942  211      00     00 0111     11369999999999


Q ss_pred             CeEEEEEEEeC
Q psy15127        135 EGLYICDVENL  145 (633)
Q Consensus       135 ~G~Y~C~~~n~  145 (633)
                      +|.|.|.+...
T Consensus        83 sa~YyCa~~~~   93 (113)
T d1h5ba_          83 SGTYFCAAEAS   93 (113)
T ss_dssp             CEEEEEEEECS
T ss_pred             CEEEEEEecCC
Confidence            99999998654

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.89  E-value=2.2e-05  Score=60.79  Aligned_cols=71  Identities=17%  Similarity=0.381  Sum_probs=50.4

Q ss_pred             eeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC--CccC-------C---------CCCeEE----cccceEEEccC
Q psy15127         73 FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD--DGKM-------P---------TGRAKI----LDDRSLQIENV  130 (633)
Q Consensus        73 ~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~--~~~i-------~---------~~~~~~----~~~~~L~i~~v  130 (633)
                      .+...|....+.+|++++|.|...+ ....+.|||.  |...       .         ..++..    ..+..|+|.++
T Consensus         3 ~V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   81 (110)
T d2aq2a1           3 AVTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESA   81 (110)
T ss_dssp             SEEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSC
T ss_pred             CEEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCC
Confidence            3556688899999999999998764 3557999994  2211       0         011111    11357999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy15127        131 GPQDEGLYICDVEN  144 (633)
Q Consensus       131 ~~~d~G~Y~C~~~n  144 (633)
                      +.+|+|.|.|.+..
T Consensus        82 ~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          82 TPSQTSVYFCASGG   95 (110)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CHhhCEEEEEeeCC
Confidence            99999999998764

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.88  E-value=1.9e-05  Score=60.79  Aligned_cols=71  Identities=21%  Similarity=0.340  Sum_probs=48.2

Q ss_pred             eeeeCCCceEEEcCCeEEEEEEEeccC-C--CeEEEEeC--CccC-------------CCCCeEEc---ccceEEEccCC
Q psy15127         73 FPISEPSDATVLSGSVVEFVCRVGGDP-L--PTILWRRD--DGKM-------------PTGRAKIL---DDRSLQIENVG  131 (633)
Q Consensus        73 ~~~~~~~~~~~~~G~~~~L~C~~~~~p-~--p~i~W~~~--~~~i-------------~~~~~~~~---~~~~L~i~~v~  131 (633)
                      .++. |+.+.+.+|++++|.|...+.. .  -.+.||+.  |+..             ..+++...   .+..|.|.+++
T Consensus         3 ~~tQ-~~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~   81 (110)
T d1oaql_           3 VVTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQ   81 (110)
T ss_dssp             CEEE-CSEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCC
T ss_pred             CEee-CCCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCC
Confidence            3444 4578899999999999986432 2  23899983  3221             01222221   23579999999


Q ss_pred             CCCCeEEEEEEEe
Q psy15127        132 PQDEGLYICDVEN  144 (633)
Q Consensus       132 ~~d~G~Y~C~~~n  144 (633)
                      .+|+|.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (110)
T d1oaql_          82 TEDEAIYFCALWY   94 (110)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             ccccEeEEEEccc
Confidence            9999999998764

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.88  E-value=1.7e-05  Score=61.86  Aligned_cols=71  Identities=23%  Similarity=0.427  Sum_probs=49.7

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC-------CC------CCeEEc-----ccceEEEccCCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM-------PT------GRAKIL-----DDRSLQIENVGPQ  133 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i-------~~------~~~~~~-----~~~~L~i~~v~~~  133 (633)
                      +...|..+.+.+|++++|.|...+. ...+.||+..  ..+       ..      .+....     .+..|.|.+++.+
T Consensus         3 l~Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (115)
T d1ogad1           3 LEQSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPG   81 (115)
T ss_dssp             CEEECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGG
T ss_pred             eEeCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCcc
Confidence            3456788899999999999997643 3479999842  211       00      111111     1247999999999


Q ss_pred             CCeEEEEEEEeC
Q psy15127        134 DEGLYICDVENL  145 (633)
Q Consensus       134 d~G~Y~C~~~n~  145 (633)
                      |+|.|.|.+...
T Consensus        82 Dsa~YyCa~~~~   93 (115)
T d1ogad1          82 DTGLYLCAGAGS   93 (115)
T ss_dssp             GCEEEEEEEECT
T ss_pred             ceeeEcccccCC
Confidence            999999987644

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=2.4e-05  Score=61.06  Aligned_cols=36  Identities=31%  Similarity=0.482  Sum_probs=27.1

Q ss_pred             cccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEEC
Q psy15127        164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKN  199 (633)
Q Consensus       164 ~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~  199 (633)
                      +.+.|....+.+|++++|.|..........+.|+|.
T Consensus         3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ   38 (114)
T d1akjd_           3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQ   38 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEE
T ss_pred             eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEE
Confidence            455677788899999999998544444557899873

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.85  E-value=1.9e-05  Score=61.50  Aligned_cols=70  Identities=16%  Similarity=0.270  Sum_probs=48.8

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccC-CCeEEEEeC--CccCC-----------C--CCeEEcc---cceEEEccCCCCCC
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDP-LPTILWRRD--DGKMP-----------T--GRAKILD---DRSLQIENVGPQDE  135 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p-~p~i~W~~~--~~~i~-----------~--~~~~~~~---~~~L~i~~v~~~d~  135 (633)
                      +.+|..+.+.+|++++|.|...+.. ...+.|||.  |+.+.           .  .+.....   +..|.|.+++.+|+
T Consensus         2 t~qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Ds   81 (112)
T d1kgcd1           2 TTQPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDA   81 (112)
T ss_dssp             EECCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGC
T ss_pred             eECCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccc
Confidence            3567889999999999999986433 345999994  32221           0  1111111   24699999999999


Q ss_pred             eEEEEEEEe
Q psy15127        136 GLYICDVEN  144 (633)
Q Consensus       136 G~Y~C~~~n  144 (633)
                      |.|.|.+..
T Consensus        82 a~YyCa~~~   90 (112)
T d1kgcd1          82 AVYYCILPL   90 (112)
T ss_dssp             EEEEEECCC
T ss_pred             eeEeeeEec
Confidence            999998653

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.85  E-value=1.8e-05  Score=61.30  Aligned_cols=70  Identities=20%  Similarity=0.280  Sum_probs=48.2

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccC-----CCeEEEEeCC--ccC----------C---CCCeEEc---ccceEEEccC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDP-----LPTILWRRDD--GKM----------P---TGRAKIL---DDRSLQIENV  130 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p-----~p~i~W~~~~--~~i----------~---~~~~~~~---~~~~L~i~~v  130 (633)
                      ++..|..+.+.+|++++|.|.+.+..     ...+.||+..  +..          .   .+++...   .+..|.|.++
T Consensus         4 lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~   83 (112)
T d1ncwl1           4 MTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRV   83 (112)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECcc
Confidence            45668889999999999999875322     2358999852  211          0   1222211   1247999999


Q ss_pred             CCCCCeEEEEEEE
Q psy15127        131 GPQDEGLYICDVE  143 (633)
Q Consensus       131 ~~~d~G~Y~C~~~  143 (633)
                      +.+|+|.|.|...
T Consensus        84 ~~eDsAvYYC~~~   96 (112)
T d1ncwl1          84 EAEDLGVYYCWQG   96 (112)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             ccCcCEeEEEEcC
Confidence            9999999999653

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.84  E-value=2.2e-05  Score=60.88  Aligned_cols=70  Identities=17%  Similarity=0.256  Sum_probs=48.6

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCC--ccC-------------CCCCeEEcc---cceEEEccCCCCCC
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDD--GKM-------------PTGRAKILD---DRSLQIENVGPQDE  135 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~--~~i-------------~~~~~~~~~---~~~L~i~~v~~~d~  135 (633)
                      .+|+++.+.+|++++|.|...+..  ...+.||+..  ...             ..+++....   ...|.|.+++.+|+
T Consensus         5 tQp~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds   84 (111)
T d1rzfl1           5 TQPPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDE   84 (111)
T ss_dssp             BCCSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             eeCcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccC
Confidence            346689999999999999876432  3459999842  211             012222211   25799999999999


Q ss_pred             eEEEEEEEeC
Q psy15127        136 GLYICDVENL  145 (633)
Q Consensus       136 G~Y~C~~~n~  145 (633)
                      |.|.|.+...
T Consensus        85 a~YyCA~~~~   94 (111)
T d1rzfl1          85 ADYYCGTWDS   94 (111)
T ss_dssp             SEEEEEEEET
T ss_pred             cceEEeecCC
Confidence            9999987643

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.83  E-value=1.7e-05  Score=61.60  Aligned_cols=69  Identities=20%  Similarity=0.296  Sum_probs=47.9

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEecc-----CCCeEEEEeCC--ccCC-------------CCCeEEcc---cceEEEccC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGD-----PLPTILWRRDD--GKMP-------------TGRAKILD---DRSLQIENV  130 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~-----p~p~i~W~~~~--~~i~-------------~~~~~~~~---~~~L~i~~v  130 (633)
                      ++..|+.+.+.+|++++|.|...+.     ....+.||+..  ....             ..++....   ...|.|.++
T Consensus         4 lTQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~   83 (112)
T d1mjul1           4 MTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRV   83 (112)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSC
T ss_pred             eEecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCc
Confidence            4566788999999999999987643     13468999843  2210             11222211   246999999


Q ss_pred             CCCCCeEEEEEE
Q psy15127        131 GPQDEGLYICDV  142 (633)
Q Consensus       131 ~~~d~G~Y~C~~  142 (633)
                      +.+|+|.|.|..
T Consensus        84 ~~~DsAvYyCa~   95 (112)
T d1mjul1          84 EAEDVGVYYCLQ   95 (112)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             cccCCceEEEEe
Confidence            999999999954

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=3.7e-05  Score=58.00  Aligned_cols=71  Identities=14%  Similarity=0.227  Sum_probs=47.9

Q ss_pred             eEEecCCceEEEEEEEeeecCCeeEEEECCEEE--Eec-------cCCccceEEEc------cCceEEEcCCCCCCCeEE
Q psy15127        249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQV--LMF-------PGNAYGHLHVT------QEGTLRIQGVQKEDAGFF  313 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~--~~~-------~~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y  313 (633)
                      .+...+|++++|.|.........+.|++.....  ...       ......+....      .+.+|.|.+++.+|+|.|
T Consensus         3 ~V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y   82 (97)
T d2nxyb1           3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (97)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             EEEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEE
Confidence            455678999999999877777789999854321  110       11112232221      123699999999999999


Q ss_pred             EEEEEe
Q psy15127        314 VCSALS  319 (633)
Q Consensus       314 ~C~a~n  319 (633)
                      .|.+.+
T Consensus        83 ~C~v~~   88 (97)
T d2nxyb1          83 ICEVED   88 (97)
T ss_dssp             EEEETT
T ss_pred             EEEEec
Confidence            999955

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.81  E-value=2e-05  Score=61.31  Aligned_cols=69  Identities=17%  Similarity=0.281  Sum_probs=48.5

Q ss_pred             CCCceEEEcCCeEEEEEEEeccC---CCeEEEEeCC--ccC-------------CCCCeEEc---ccceEEEccCCCCCC
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGDP---LPTILWRRDD--GKM-------------PTGRAKIL---DDRSLQIENVGPQDE  135 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~p---~p~i~W~~~~--~~i-------------~~~~~~~~---~~~~L~i~~v~~~d~  135 (633)
                      +|..+.+.+|++++|.|...+..   ...+.|||..  +.+             ..+++...   .+..|.|.+++.+|+
T Consensus         6 QP~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   85 (112)
T d1lgva1           6 QPASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDE   85 (112)
T ss_dssp             CCSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             CCCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccC
Confidence            47789999999999999976432   2358999843  211             01122211   235799999999999


Q ss_pred             eEEEEEEEeC
Q psy15127        136 GLYICDVENL  145 (633)
Q Consensus       136 G~Y~C~~~n~  145 (633)
                      |.|.|.+...
T Consensus        86 a~YyCa~~~~   95 (112)
T d1lgva1          86 ADYYCSSYDG   95 (112)
T ss_dssp             EEEEEEEECS
T ss_pred             EEEEEeeecC
Confidence            9999987643

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.80  E-value=3.4e-05  Score=59.95  Aligned_cols=69  Identities=17%  Similarity=0.314  Sum_probs=48.3

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC--CccC-----------------CCCCeEEcc----cceEEEccCC
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD--DGKM-----------------PTGRAKILD----DRSLQIENVG  131 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~--~~~i-----------------~~~~~~~~~----~~~L~i~~v~  131 (633)
                      ...|..+.+.+|++++|.|...+ ....+.|||.  ++..                 ..+++....    ...|+|.+++
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (112)
T d1kgce1           3 SQSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQ   81 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCC
T ss_pred             EECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCC
Confidence            45577888999999999998643 3457999984  2211                 012222211    2479999999


Q ss_pred             CCCCeEEEEEEEe
Q psy15127        132 PQDEGLYICDVEN  144 (633)
Q Consensus       132 ~~d~G~Y~C~~~n  144 (633)
                      .+|+|.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (112)
T d1kgce1          82 QEDSAVYLCASSL   94 (112)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             cCCCEEEEEeeeC
Confidence            9999999998753

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.80  E-value=5.6e-05  Score=59.32  Aligned_cols=72  Identities=22%  Similarity=0.273  Sum_probs=51.6

Q ss_pred             eeeeCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeC--CccC-------------CCCCeEEcc-----cceEEEccC
Q psy15127         73 FPISEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRD--DGKM-------------PTGRAKILD-----DRSLQIENV  130 (633)
Q Consensus        73 ~~~~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~--~~~i-------------~~~~~~~~~-----~~~L~i~~v  130 (633)
                      .++.++..+.+.+|++++|.|...+..  ...+.|||.  |+.+             ..+++....     ...|.|.++
T Consensus         3 ~vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~   82 (120)
T d1hxma1           3 ELVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAP   82 (120)
T ss_dssp             CEEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSC
T ss_pred             eEeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccc
Confidence            356677888999999999999987543  346999983  3211             012332221     247999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy15127        131 GPQDEGLYICDVEN  144 (633)
Q Consensus       131 ~~~d~G~Y~C~~~n  144 (633)
                      +.+|+|.|.|....
T Consensus        83 ~~~Dsa~YyCA~~~   96 (120)
T d1hxma1          83 SERDEGSYYCACDT   96 (120)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             cccCCceeecCccc
Confidence            99999999998654

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.79  E-value=2.6e-05  Score=58.27  Aligned_cols=73  Identities=21%  Similarity=0.192  Sum_probs=52.5

Q ss_pred             CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCe---EEc--ccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRA---KIL--DDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~---~~~--~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      +|.+...|.. .+..|++|+|.|... .....+.++|+|......+.   ...  ....+.|.+++.+|+|.|+|.....
T Consensus         2 KPsLsa~P~~-~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1           2 KPSLLAHPGP-LVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            6788778754 589999999999875 34567899998864321110   111  1246999999999999999987643

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=1e-05  Score=63.22  Aligned_cols=66  Identities=18%  Similarity=0.266  Sum_probs=45.0

Q ss_pred             ceEEEcCCeEEEEEEEec--cCCCeEEEEeCC--ccC------C----------CCCeEEccc-----ceEEEccCCCCC
Q psy15127         80 DATVLSGSVVEFVCRVGG--DPLPTILWRRDD--GKM------P----------TGRAKILDD-----RSLQIENVGPQD  134 (633)
Q Consensus        80 ~~~~~~G~~~~L~C~~~~--~p~p~i~W~~~~--~~i------~----------~~~~~~~~~-----~~L~i~~v~~~d  134 (633)
                      ...+.+|++++|.|...+  .....+.|+|..  ...      .          .+++....+     .+|+|.+++.+|
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D   87 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED   87 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence            356789999999998753  234568999842  211      0          123332221     359999999999


Q ss_pred             CeEEEEEEEeC
Q psy15127        135 EGLYICDVENL  145 (633)
Q Consensus       135 ~G~Y~C~~~n~  145 (633)
                      +|.|.|.+...
T Consensus        88 sg~Y~Cav~~~   98 (113)
T d1smoa_          88 SGLYQCVIYQP   98 (113)
T ss_dssp             CEEEEEEECCT
T ss_pred             CceEEEEEECC
Confidence            99999988543

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.78  E-value=5.3e-05  Score=59.65  Aligned_cols=70  Identities=23%  Similarity=0.415  Sum_probs=48.8

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeC--CccC------------------CCCCeEEcc-----cceEEE
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRD--DGKM------------------PTGRAKILD-----DRSLQI  127 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~--~~~i------------------~~~~~~~~~-----~~~L~i  127 (633)
                      ...+.++...+|++++|.|.+.|..  ...+.|||.  |+.+                  ..+++....     ...|.|
T Consensus         5 ~Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i   84 (123)
T d1hxmb1           5 EQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTI   84 (123)
T ss_dssp             ECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEE
T ss_pred             ECCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecc
Confidence            3444567888999999999998643  336899984  2211                  123443332     135999


Q ss_pred             ccCCCCCCeEEEEEEEe
Q psy15127        128 ENVGPQDEGLYICDVEN  144 (633)
Q Consensus       128 ~~v~~~d~G~Y~C~~~n  144 (633)
                      .+++.+|+|.|.|.+..
T Consensus        85 ~~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          85 HNVEKQDIATYYCALWE  101 (123)
T ss_dssp             CSCCGGGCEEEEEEEEE
T ss_pred             cccccccCcEEEEeeeC
Confidence            99999999999998753

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.76  E-value=3.7e-05  Score=59.47  Aligned_cols=71  Identities=23%  Similarity=0.344  Sum_probs=48.5

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEecc----CCCeEEEEeC--CccCC-------------CCCeEEcc---cceEEEccCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGD----PLPTILWRRD--DGKMP-------------TGRAKILD---DRSLQIENVG  131 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~----p~p~i~W~~~--~~~i~-------------~~~~~~~~---~~~L~i~~v~  131 (633)
                      ++..|..+.+.+|++++|.|.....    ....+.||+.  |+...             ..++....   +..|.|.+++
T Consensus         4 ltQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   83 (111)
T d1j05a_           4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVE   83 (111)
T ss_dssp             EEEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCC
T ss_pred             EEccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccc
Confidence            3456888889999999999987421    1224999984  33210             11222211   2479999999


Q ss_pred             CCCCeEEEEEEEe
Q psy15127        132 PQDEGLYICDVEN  144 (633)
Q Consensus       132 ~~d~G~Y~C~~~n  144 (633)
                      .+|+|.|.|.+.+
T Consensus        84 ~~Dsa~YyCa~~~   96 (111)
T d1j05a_          84 ADDVATYYCQQTN   96 (111)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             cccCccEEEeecC
Confidence            9999999997653

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.76  E-value=5.2e-05  Score=59.39  Aligned_cols=71  Identities=17%  Similarity=0.266  Sum_probs=47.8

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCC--ccC-------C----------CCCeEEcc-----cceEEE
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDD--GKM-------P----------TGRAKILD-----DRSLQI  127 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~--~~i-------~----------~~~~~~~~-----~~~L~i  127 (633)
                      +...|..+...+|++++|.|.+.+..  ...+.|||..  +.+       .          .+++....     ...|+|
T Consensus         4 l~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I   83 (120)
T d1ypzf1           4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI   83 (120)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred             eEcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccc
Confidence            44455677888999999999986532  3469999843  211       0          11222211     135999


Q ss_pred             ccCCCCCCeEEEEEEEe
Q psy15127        128 ENVGPQDEGLYICDVEN  144 (633)
Q Consensus       128 ~~v~~~d~G~Y~C~~~n  144 (633)
                      .+++.+|+|.|.|....
T Consensus        84 ~~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          84 YSLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             CSCCGGGCSEEEEEECC
T ss_pred             cccccccceeEEEEEcC
Confidence            99999999999997653

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=5.8e-06  Score=71.93  Aligned_cols=73  Identities=5%  Similarity=-0.120  Sum_probs=38.4

Q ss_pred             eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127        534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF  613 (633)
Q Consensus       534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~  613 (633)
                      .+..+++++|.|+|++|        ...+|.|.+| .|+|+......       |.          ..........|.++
T Consensus        10 ~~~~~s~~si~vsW~pP--------~~~ng~i~~Y-~V~~~~~~~~~-------~~----------~~~~~~~~~~~~~~   63 (196)
T d2dtge2          10 ISVSNSSSQIILKWKPP--------SDPNGNITHY-LVFWERQAEDS-------EL----------FELDYCLKGLKLPS   63 (196)
T ss_dssp             EEEECSSSCEEEEEECC--------CCSSSSCSEE-ECCEEEECCCC-------SC----------TTCSSSCSCCCCCC
T ss_pred             EEEeccCCEEEEEEECC--------CCCCCcEEEE-EEEEEcCCCCC-------ce----------eEEeeEEeccccce
Confidence            78889999999999965        4567899999 99998776543       11          11222333457788


Q ss_pred             eeEEEEEeccccccccccC
Q psy15127        614 TKYEFFLVPFFKTVEGARL  632 (633)
Q Consensus       614 t~Y~~~v~a~n~~g~g~~s  632 (633)
                      +.|.++|.|.|..|.+..+
T Consensus        64 ~~y~~~v~~~~~~~~~~~~   82 (196)
T d2dtge2          64 RTWSPPFESEDSQKHNQSE   82 (196)
T ss_dssp             -------------------
T ss_pred             eEEEEEEEEEcCCccccCc
Confidence            9999999999998887654

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.72  E-value=7.4e-05  Score=58.18  Aligned_cols=69  Identities=14%  Similarity=0.300  Sum_probs=48.5

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCc--cC-------C---------CCCeEEc----ccceEEEccCCC
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG--KM-------P---------TGRAKIL----DDRSLQIENVGP  132 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~--~i-------~---------~~~~~~~----~~~~L~i~~v~~  132 (633)
                      +..|..+.+.+|++++|.|... .....+.||+...  .+       .         ..++...    ....|.|.+++.
T Consensus         3 tQsP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (114)
T d1ogae1           3 TQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQK   81 (114)
T ss_dssp             ECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCS
T ss_pred             EEcCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCc
Confidence            4557788999999999999975 3345799998432  11       0         0111111    124699999999


Q ss_pred             CCCeEEEEEEEe
Q psy15127        133 QDEGLYICDVEN  144 (633)
Q Consensus       133 ~d~G~Y~C~~~n  144 (633)
                      +|+|.|.|.+..
T Consensus        82 ~DSa~YyCa~~~   93 (114)
T d1ogae1          82 NPTAFYLCASSS   93 (114)
T ss_dssp             CCCEEEEEEEES
T ss_pred             CCceeEEEeecc
Confidence            999999997653

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.72  E-value=3.6e-05  Score=57.57  Aligned_cols=60  Identities=23%  Similarity=0.405  Sum_probs=42.3

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCc--cC------C------CCCeEEcc-----cceEEEccCCCCCCeEEEEEEEeC
Q psy15127         86 GSVVEFVCRVGGDPLPTILWRRDDG--KM------P------TGRAKILD-----DRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        86 G~~~~L~C~~~~~p~p~i~W~~~~~--~i------~------~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      |++++|.|.........+.|||...  ..      .      .+++....     ..+|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            7899999998766667899998332  11      0      12222211     147999999999999999988643

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.71  E-value=5.1e-05  Score=59.06  Aligned_cols=69  Identities=16%  Similarity=0.297  Sum_probs=48.5

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC--CccC----------------CCCCeEEcc----cceEEEccCCC
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD--DGKM----------------PTGRAKILD----DRSLQIENVGP  132 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~--~~~i----------------~~~~~~~~~----~~~L~i~~v~~  132 (633)
                      +..|..+.+.+|++++|.|...+. ...+.|||.  ++..                ...++....    +..|+|.+++.
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (113)
T d2ntsp1           3 TQTPRYLIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLEL   81 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCG
T ss_pred             EeCCCeEEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCc
Confidence            345778889999999999987542 457999983  3321                011222211    24799999999


Q ss_pred             CCCeEEEEEEEe
Q psy15127        133 QDEGLYICDVEN  144 (633)
Q Consensus       133 ~d~G~Y~C~~~n  144 (633)
                      +|+|.|.|.+..
T Consensus        82 ~Dsa~YyCA~~~   93 (113)
T d2ntsp1          82 GDSALYLCASSL   93 (113)
T ss_dssp             GGCEEEEEEEES
T ss_pred             ccceeeeeeeeC
Confidence            999999998764

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.71  E-value=7.3e-05  Score=58.11  Aligned_cols=70  Identities=14%  Similarity=0.239  Sum_probs=49.4

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC--CccC-------C---------CCCeEEcc----cceEEEccCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD--DGKM-------P---------TGRAKILD----DRSLQIENVG  131 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~--~~~i-------~---------~~~~~~~~----~~~L~i~~v~  131 (633)
                      +...|..+.+.+|++++|.|.... ....+.|||.  |+.+       .         ..++....    ...|.|.+++
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   81 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAS   81 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCC
T ss_pred             EEccCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCc
Confidence            556788889999999999998643 3457899984  2211       0         11122111    2479999999


Q ss_pred             CCCCeEEEEEEEe
Q psy15127        132 PQDEGLYICDVEN  144 (633)
Q Consensus       132 ~~d~G~Y~C~~~n  144 (633)
                      .+|+|.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (113)
T d1j8he1          82 TNQTSMYLCASSS   94 (113)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cCCcccEEeeEcc
Confidence            9999999998864

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.70  E-value=5.5e-05  Score=57.87  Aligned_cols=74  Identities=16%  Similarity=0.217  Sum_probs=48.3

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEEC--CE--EEEecc-----CCccceEEEc---cCceEEEcCCCCCCCeEEE
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQE--GS--QVLMFP-----GNAYGHLHVT---QEGTLRIQGVQKEDAGFFV  314 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~--g~--~~~~~~-----~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~  314 (633)
                      +..+.+.+|++++|.|.........+.|++.  |.  .+....     .....++...   ....|.|.++.++|+|.|.
T Consensus         7 P~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~Yy   86 (106)
T d1a0ql1           7 PSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATYY   86 (106)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeEE
Confidence            3456678999999999986665567999983  21  111110     0111233332   2237999999999999999


Q ss_pred             EEEEeC
Q psy15127        315 CSALSV  320 (633)
Q Consensus       315 C~a~n~  320 (633)
                      |.+...
T Consensus        87 Ca~~~~   92 (106)
T d1a0ql1          87 CLQYYN   92 (106)
T ss_dssp             EEECSS
T ss_pred             EEEeCC
Confidence            987543

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.69  E-value=5.6e-05  Score=58.55  Aligned_cols=70  Identities=21%  Similarity=0.265  Sum_probs=48.8

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEecc-----CCCeEEEEeCC--ccC-------------CCCCeEEc---ccceEEEccC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGD-----PLPTILWRRDD--GKM-------------PTGRAKIL---DDRSLQIENV  130 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~-----p~p~i~W~~~~--~~i-------------~~~~~~~~---~~~~L~i~~v  130 (633)
                      ++..|..+.+.+|++++|.|...+.     ....+.||+..  +..             ...++...   .+..|+|.++
T Consensus         5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~   84 (113)
T d1n4xl_           5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV   84 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSC
T ss_pred             EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCC
Confidence            4566888999999999999997532     22469999843  211             01122221   1247999999


Q ss_pred             CCCCCeEEEEEEE
Q psy15127        131 GPQDEGLYICDVE  143 (633)
Q Consensus       131 ~~~d~G~Y~C~~~  143 (633)
                      +.+|+|.|.|...
T Consensus        85 ~~~DsavYyCa~~   97 (113)
T d1n4xl_          85 EAEDLGIYYCFQG   97 (113)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CcccCEEEEEEEC
Confidence            9999999999654

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=0.00014  Score=54.21  Aligned_cols=63  Identities=11%  Similarity=0.338  Sum_probs=44.5

Q ss_pred             cCCeEEEEEEEec-cCCCeEEEEeCCccCCCCCeEEcc---c------ceEEEccCCCCCCeEEEEEEEeCCceEE
Q psy15127         85 SGSVVEFVCRVGG-DPLPTILWRRDDGKMPTGRAKILD---D------RSLQIENVGPQDEGLYICDVENLVGSIS  150 (633)
Q Consensus        85 ~G~~~~L~C~~~~-~p~p~i~W~~~~~~i~~~~~~~~~---~------~~L~i~~v~~~d~G~Y~C~~~n~~g~~s  150 (633)
                      .|+.++|.|.+.| .|.+.|+|+++|..+.........   +      +.|.|.   ..+...|+|.+........
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~~   87 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRVN   87 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCEE
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCCc
Confidence            4778999999986 698899999999887544322211   1      345553   4567899999987755443

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.68  E-value=2.8e-05  Score=60.45  Aligned_cols=71  Identities=11%  Similarity=0.258  Sum_probs=49.6

Q ss_pred             eeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCc--cC----------------CCCCeEEc----ccceEEEccC
Q psy15127         73 FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG--KM----------------PTGRAKIL----DDRSLQIENV  130 (633)
Q Consensus        73 ~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~--~i----------------~~~~~~~~----~~~~L~i~~v  130 (633)
                      .++..|..+.+.+|++++|.|..... ...+.|||...  .+                ...++...    ....|+|.++
T Consensus         3 ~VtQ~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   81 (113)
T d1nfdb1           3 GVVQSPRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSAL   81 (113)
T ss_dssp             SCEEECSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSC
T ss_pred             CEEEcCCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEeccc
Confidence            35567888999999999999986532 45799998532  11                01111111    1237999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy15127        131 GPQDEGLYICDVEN  144 (633)
Q Consensus       131 ~~~d~G~Y~C~~~n  144 (633)
                      +.+|+|.|.|.+..
T Consensus        82 ~~~Dsa~YyCa~~~   95 (113)
T d1nfdb1          82 ELEDSAMYFCASSL   95 (113)
T ss_dssp             CGGGCEEECEEEES
T ss_pred             CcCCceeEEEEeec
Confidence            99999999998753

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.64  E-value=3.4e-06  Score=63.48  Aligned_cols=67  Identities=19%  Similarity=0.422  Sum_probs=46.0

Q ss_pred             ceEEEcCCeEEEEEEEeccCCCeEEEEeC--CccC-------------CCCCeEEcc-----cceEEEccCCCCCCeEEE
Q psy15127         80 DATVLSGSVVEFVCRVGGDPLPTILWRRD--DGKM-------------PTGRAKILD-----DRSLQIENVGPQDEGLYI  139 (633)
Q Consensus        80 ~~~~~~G~~~~L~C~~~~~p~p~i~W~~~--~~~i-------------~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~  139 (633)
                      .+.|.+|++++|.|.... ....+.|||.  |+.+             ..+++....     ...|.|.+++.+|+|.|.
T Consensus         2 slsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   80 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYF   80 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCE
T ss_pred             CceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEe
Confidence            456889999999998753 3447999984  2221             112222211     136999999999999999


Q ss_pred             EEEEeCCc
Q psy15127        140 CDVENLVG  147 (633)
Q Consensus       140 C~~~n~~g  147 (633)
                      |.+....+
T Consensus        81 CA~~~~~g   88 (96)
T d1ymmd1          81 CATDTTSG   88 (96)
T ss_dssp             EEEEETTS
T ss_pred             EeEecCCC
Confidence            98865544

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.64  E-value=0.0002  Score=55.76  Aligned_cols=35  Identities=17%  Similarity=0.305  Sum_probs=26.0

Q ss_pred             ccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEEC
Q psy15127        165 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKN  199 (633)
Q Consensus       165 ~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~  199 (633)
                      ...|....+.+|++++|.|..........+.|++.
T Consensus         2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq   36 (115)
T d2atpb1           2 IQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRE   36 (115)
T ss_dssp             EEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEE
T ss_pred             EeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEe
Confidence            34567778899999999999543345567899864

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=4.4e-05  Score=57.77  Aligned_cols=75  Identities=9%  Similarity=-0.023  Sum_probs=48.5

Q ss_pred             EecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEE
Q psy15127        251 IWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  327 (633)
Q Consensus       251 ~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  327 (633)
                      .+..|++|+|.|.+. .+...+.|+++|........ ............+.|.+++..|+|.|.|...+....+..+
T Consensus        17 ~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~-~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~S   91 (99)
T d1ucta1          17 VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIG-RRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYS   91 (99)
T ss_dssp             EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECS-EECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEEC
T ss_pred             ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceecc-ccccCCCCceEEEEecCCCHHHCceEEEEEECCCcccCCC
Confidence            466899999999863 34568889987742211000 0000011133469999999999999999998877655444

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.63  E-value=7.6e-05  Score=57.02  Aligned_cols=72  Identities=14%  Similarity=0.189  Sum_probs=47.5

Q ss_pred             eeEEecCCceEEEEEEEeeecCCeeEEEEC--CEEEE--ec-----cCCccceEEEc---cCceEEEcCCCCCCCeEEEE
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQE--GSQVL--MF-----PGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVC  315 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~--g~~~~--~~-----~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C  315 (633)
                      ..+.+.+|++++|.|.........+.|++.  |+...  ..     ......++...   ...+|.|.++..+|+|.|.|
T Consensus         9 ~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyC   88 (106)
T d1i8ka_           9 ASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYYC   88 (106)
T ss_dssp             SEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEEeE
Confidence            456678899999999887666667999973  32111  00     11112233222   23469999999999999999


Q ss_pred             EEEe
Q psy15127        316 SALS  319 (633)
Q Consensus       316 ~a~n  319 (633)
                      .+.+
T Consensus        89 a~~~   92 (106)
T d1i8ka_          89 LQSF   92 (106)
T ss_dssp             EECS
T ss_pred             ecCc
Confidence            8654

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=0.00017  Score=55.88  Aligned_cols=34  Identities=21%  Similarity=0.387  Sum_probs=25.8

Q ss_pred             ccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEE
Q psy15127        165 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKK  198 (633)
Q Consensus       165 ~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~  198 (633)
                      .+.|....+.+|++++|.|..........+.|+|
T Consensus         3 tqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyr   36 (114)
T d3bp5a1           3 TFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNR   36 (114)
T ss_dssp             EEESSEEEEETTCCEEEEEEESCCCTTCEEEEEE
T ss_pred             eECCCeEEECCCCCEEEEEEECCCCCcceEEEEE
Confidence            4567778899999999999854444455788987

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=0.00012  Score=54.65  Aligned_cols=70  Identities=11%  Similarity=0.029  Sum_probs=47.9

Q ss_pred             EecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127        251 IWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       251 ~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                      .+..|++|+|.|... .....+.|+++|...........   .......+.|.+++..|+|.|.|...+..+.+
T Consensus        14 ~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~---~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~S   83 (95)
T d1olla1          14 MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPP---ERINKVKFYIPDMNSRMAGQYSCIYRVGELWS   83 (95)
T ss_dssp             EEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCSSC---TTCCEEEEEESSCCGGGCEEEEEEEEETTEEC
T ss_pred             cccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEccC---CCccEEEEEEeeeecCCCceEEEEeCCCCCcc
Confidence            456899999999852 33468899999875432111000   00112369999999999999999988776544

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.61  E-value=0.00011  Score=56.84  Aligned_cols=68  Identities=15%  Similarity=0.324  Sum_probs=48.0

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC--CccCC----------------CCCeEEcc----cceEEEccCCC
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD--DGKMP----------------TGRAKILD----DRSLQIENVGP  132 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~--~~~i~----------------~~~~~~~~----~~~L~i~~v~~  132 (633)
                      +..|....+.+|++++|.|.... -...+.|||.  |+...                ..++....    +..|.|.++..
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (112)
T d2bnub1           3 TQTPKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAP   81 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCG
T ss_pred             EECCCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCH
Confidence            45577788999999999998753 3457999984  32110                11222211    24799999999


Q ss_pred             CCCeEEEEEEE
Q psy15127        133 QDEGLYICDVE  143 (633)
Q Consensus       133 ~d~G~Y~C~~~  143 (633)
                      +|+|.|.|.+.
T Consensus        82 ~DsavYyCA~~   92 (112)
T d2bnub1          82 SQTSVYFCASS   92 (112)
T ss_dssp             GGCEEEEEEEE
T ss_pred             HHCEEEEEeec
Confidence            99999999875

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=6.2e-05  Score=59.07  Aligned_cols=69  Identities=23%  Similarity=0.364  Sum_probs=46.6

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCC---eEEEEeCCc--cCC--------------CCCeEE-----cccceEEEccCC
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLP---TILWRRDDG--KMP--------------TGRAKI-----LDDRSLQIENVG  131 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p---~i~W~~~~~--~i~--------------~~~~~~-----~~~~~L~i~~v~  131 (633)
                      .+|..+.+.+|++++|.|.......+   .+.|+|...  ...              ..+...     .....|.|.+++
T Consensus         4 tQP~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~   83 (118)
T d1i8lc_           4 AQPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLR   83 (118)
T ss_dssp             ECCSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCC
T ss_pred             eCCCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccc
Confidence            45777888999999999998533222   489998532  110              000000     012479999999


Q ss_pred             CCCCeEEEEEEEe
Q psy15127        132 PQDEGLYICDVEN  144 (633)
Q Consensus       132 ~~d~G~Y~C~~~n  144 (633)
                      .+|+|.|.|.+..
T Consensus        84 ~~Dsa~YyCa~~~   96 (118)
T d1i8lc_          84 AMDTGLYICKVEL   96 (118)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCCCEEEEEeEec
Confidence            9999999998753

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.60  E-value=4.9e-05  Score=59.59  Aligned_cols=68  Identities=24%  Similarity=0.303  Sum_probs=46.0

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCC---eEEEEeCC--ccC-------C--------CCCeEE----cccceEEEccCC
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLP---TILWRRDD--GKM-------P--------TGRAKI----LDDRSLQIENVG  131 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p---~i~W~~~~--~~i-------~--------~~~~~~----~~~~~L~i~~v~  131 (633)
                      .+|..+.+.+|++++|.|.......+   .+.|+|..  +..       .        ......    .....|.|.+++
T Consensus         4 tQP~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~   83 (117)
T d1dqta_           4 TQPSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLR   83 (117)
T ss_dssp             ECCSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCC
T ss_pred             ECCCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCc
Confidence            34777889999999999998533222   47899842  211       0        011100    112479999999


Q ss_pred             CCCCeEEEEEEE
Q psy15127        132 PQDEGLYICDVE  143 (633)
Q Consensus       132 ~~d~G~Y~C~~~  143 (633)
                      .+|+|.|.|.+.
T Consensus        84 ~~Dsa~YyCa~~   95 (117)
T d1dqta_          84 AVDTGLYLCKVE   95 (117)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccCEeEEEEEe
Confidence            999999999875

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.00016  Score=55.71  Aligned_cols=72  Identities=10%  Similarity=0.008  Sum_probs=46.3

Q ss_pred             ecCCceEEEEEEEee-ecCC--eeEEEECCEEEEeccCCcc--ceEEEccCceEEEcCCCCCCCeEEEEEEEeCCce
Q psy15127        252 WNHPRVNRLSCFAEG-SPLP--SVFWTQEGSQVLMFPGNAY--GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  323 (633)
Q Consensus       252 ~~~g~~~~l~C~~~g-~p~~--~v~W~~~g~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  323 (633)
                      +.+|+.++|.|.+.+ +|.+  .+.|++++..+........  ........+.|.+.-...++...|+|+|.+..+.
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE   89 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCC
Confidence            568999999999976 5643  6899999987753221100  0001112235777755556666999999988644

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.59  E-value=3.4e-05  Score=60.20  Aligned_cols=35  Identities=23%  Similarity=0.503  Sum_probs=26.0

Q ss_pred             cccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEEC
Q psy15127        164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKN  199 (633)
Q Consensus       164 ~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~  199 (633)
                      +.+.|....+.+|+.++|.|.. .......+.|++.
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~-~~~~~~~~~Wyrq   37 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNY-TVSPFSNLRWYKQ   37 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEE-CCSCCSEEEEEEE
T ss_pred             cEeeCCEEEEeCCCCEEEEEEE-cCCCccCceEEEe
Confidence            3456777888899999999983 4455567889873

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.58  E-value=9.7e-05  Score=56.36  Aligned_cols=74  Identities=16%  Similarity=0.205  Sum_probs=48.4

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEE--CCEEEE--ecc-----CCccceEEE---ccCceEEEcCCCCCCCeEEE
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQ--EGSQVL--MFP-----GNAYGHLHV---TQEGTLRIQGVQKEDAGFFV  314 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~--~g~~~~--~~~-----~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~  314 (633)
                      +..+...+|++++|.|.........+.|+|  .|....  ...     .....+...   ..+..|.|.++..+|+|.|.
T Consensus         8 P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   87 (107)
T d1c5cl1           8 PSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYY   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEEE
Confidence            345667789999999998776666799997  232211  110     011112222   12347999999999999999


Q ss_pred             EEEEeC
Q psy15127        315 CSALSV  320 (633)
Q Consensus       315 C~a~n~  320 (633)
                      |.+.+.
T Consensus        88 Ca~~~~   93 (107)
T d1c5cl1          88 CLQYAS   93 (107)
T ss_dssp             EEECSS
T ss_pred             EecCcC
Confidence            987543

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.57  E-value=0.00012  Score=55.94  Aligned_cols=67  Identities=18%  Similarity=0.359  Sum_probs=46.9

Q ss_pred             CceEEEcCCeEEEEEEEecc--CCCeEEEEeC--Ccc----C-C-----------CCCeEEccc-----ceEEEccCCCC
Q psy15127         79 SDATVLSGSVVEFVCRVGGD--PLPTILWRRD--DGK----M-P-----------TGRAKILDD-----RSLQIENVGPQ  133 (633)
Q Consensus        79 ~~~~~~~G~~~~L~C~~~~~--p~p~i~W~~~--~~~----i-~-----------~~~~~~~~~-----~~L~i~~v~~~  133 (633)
                      +...+++|++++|.|...+.  ..-.+.|+|.  +..    + .           .+++.+..+     -.|+|.+++.+
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~e   82 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVT   82 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccC
Confidence            45678999999999998653  3446899984  321    1 0           123333322     35999999999


Q ss_pred             CCeEEEEEEEeC
Q psy15127        134 DEGLYICDVENL  145 (633)
Q Consensus       134 d~G~Y~C~~~n~  145 (633)
                      |+|.|.|.....
T Consensus        83 Dsa~YyCa~~~~   94 (110)
T d1u9ka_          83 DSGLYRCVIYHP   94 (110)
T ss_dssp             GCEEEEEEEECT
T ss_pred             CCEEEEEEEeCC
Confidence            999999987543

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.57  E-value=0.00015  Score=56.99  Aligned_cols=73  Identities=22%  Similarity=0.334  Sum_probs=47.8

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEEC--CEE------EE-eccC----------CccceEEEc---cC-ceEEEc
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQE--GSQ------VL-MFPG----------NAYGHLHVT---QE-GTLRIQ  303 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~--g~~------~~-~~~~----------~~~~~~~~~---~~-~~l~i~  303 (633)
                      +..+...+|++++|.|.+.+.....+.|+|-  |..      +. ....          ....++...   .+ .+|+|.
T Consensus         8 P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I~   87 (122)
T d1nezg_           8 PKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLN   87 (122)
T ss_dssp             SSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEES
T ss_pred             CCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEEEc
Confidence            3446678899999999998877788999872  221      11 0000          011122211   11 269999


Q ss_pred             CCCCCCCeEEEEEEEe
Q psy15127        304 GVQKEDAGFFVCSALS  319 (633)
Q Consensus       304 ~~~~~d~G~Y~C~a~n  319 (633)
                      ++..+|+|.|.|.+..
T Consensus        88 ~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          88 KFSKENEGYYFCSVIS  103 (122)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             ccccCCCEEEEeeEeC
Confidence            9999999999998753

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.57  E-value=8e-05  Score=56.63  Aligned_cols=68  Identities=19%  Similarity=0.454  Sum_probs=48.1

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC------C------------CCCeEEccc-----ceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM------P------------TGRAKILDD-----RSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i------~------------~~~~~~~~~-----~~L~i~  128 (633)
                      .+.....+++|++++|.|.+.|....  .+.|+|.  |+.+      .            .+|+.+..|     ..|.|.
T Consensus         4 ~esg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~   83 (117)
T d1um5h1           4 QQSGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELS   83 (117)
T ss_dssp             EECCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeeccc
Confidence            44556678999999999999876443  5899884  3211      0            234444332     259999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy15127        129 NVGPQDEGLYICDVE  143 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~  143 (633)
                      +++.+|++.|.|...
T Consensus        84 sL~~eDtAvYYCAr~   98 (117)
T d1um5h1          84 SLTSEDSAVYYCARS   98 (117)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEeec
Confidence            999999999999754

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.57  E-value=6.5e-05  Score=58.30  Aligned_cols=70  Identities=14%  Similarity=0.354  Sum_probs=48.8

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC--ccC-------C---------CCCeEEc----ccceEEEccCCC
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--GKM-------P---------TGRAKIL----DDRSLQIENVGP  132 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~--~~i-------~---------~~~~~~~----~~~~L~i~~v~~  132 (633)
                      ...|..+.+.+|++++|.|.... ....+.|||..  ..+       .         ..+....    ....|.|.+++.
T Consensus         2 ~QsP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   80 (112)
T d2cdeb1           2 YQTPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARP   80 (112)
T ss_dssp             EEECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCT
T ss_pred             EECCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccc
Confidence            45577888999999999999753 24579999843  211       0         0111111    124699999999


Q ss_pred             CCCeEEEEEEEeC
Q psy15127        133 QDEGLYICDVENL  145 (633)
Q Consensus       133 ~d~G~Y~C~~~n~  145 (633)
                      +|+|.|.|.+...
T Consensus        81 ~Dsa~YyCA~~~~   93 (112)
T d2cdeb1          81 SHTSQYLCASSEN   93 (112)
T ss_dssp             TTCSEEEEEEECS
T ss_pred             cccccEEEEEecC
Confidence            9999999987643

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.56  E-value=8.3e-05  Score=56.39  Aligned_cols=66  Identities=20%  Similarity=0.430  Sum_probs=46.1

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--Ccc------C-C-----------CCCeEEccc-----ceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGK------M-P-----------TGRAKILDD-----RSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~------i-~-----------~~~~~~~~~-----~~L~i~  128 (633)
                      .+.....+++|++++|.|.+.|....  .+.|+|.  |+.      | .           .+|+.+..|     -.|.|.
T Consensus         5 ~esg~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~   84 (118)
T d1nlbh1           5 VQSGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQIN   84 (118)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeee
Confidence            34455668999999999999875433  5899884  321      1 1           234444332     248999


Q ss_pred             cCCCCCCeEEEEE
Q psy15127        129 NVGPQDEGLYICD  141 (633)
Q Consensus       129 ~v~~~d~G~Y~C~  141 (633)
                      +++.+|++.|.|.
T Consensus        85 ~L~~eDtAvYYCA   97 (118)
T d1nlbh1          85 SLKNEDTATYFCA   97 (118)
T ss_dssp             SCCGGGCEEEEEE
T ss_pred             ecccCcceEEEEe
Confidence            9999999999995

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.56  E-value=0.00011  Score=56.23  Aligned_cols=73  Identities=23%  Similarity=0.314  Sum_probs=48.2

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEECC--EE--EEec-----cCCccceEEEc---cCceEEEcCCCCCCCeEEE
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEG--SQ--VLMF-----PGNAYGHLHVT---QEGTLRIQGVQKEDAGFFV  314 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g--~~--~~~~-----~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~  314 (633)
                      +..+.+.+|++++|.|.........+.|+|..  ..  +...     ......++...   .+..|.|.++..+|+|.|.
T Consensus         8 p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (107)
T d1j1pl_           8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEEE
Confidence            44567889999999999866656679999732  21  1110     01111233222   2337999999999999999


Q ss_pred             EEEEe
Q psy15127        315 CSALS  319 (633)
Q Consensus       315 C~a~n  319 (633)
                      |.+.+
T Consensus        88 Ca~~~   92 (107)
T d1j1pl_          88 CQQAN   92 (107)
T ss_dssp             EEECS
T ss_pred             EEcCC
Confidence            97654

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.56  E-value=5.2e-05  Score=59.00  Aligned_cols=34  Identities=24%  Similarity=0.440  Sum_probs=26.1

Q ss_pred             cccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEE
Q psy15127        164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKK  198 (633)
Q Consensus       164 ~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~  198 (633)
                      +.+.|....+.+|+.++|.|.. .+.....+.|+|
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~-s~~~~~~~~Wyr   36 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSF-TDSAIYNLQWFR   36 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEE-SCCCEEEEEEEE
T ss_pred             cEeeCCEEEEcCCCCEEEEEEE-ecCcccCCeEEE
Confidence            4556778889999999999984 444455788987

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.56  E-value=8e-05  Score=55.97  Aligned_cols=76  Identities=28%  Similarity=0.441  Sum_probs=48.0

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEecc-C-CCeEEEEeCCccCCCCCeE----Ecccce---EEEccCCCCCCeEEEE
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGD-P-LPTILWRRDDGKMPTGRAK----ILDDRS---LQIENVGPQDEGLYIC  140 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~-p-~p~i~W~~~~~~i~~~~~~----~~~~~~---L~i~~v~~~d~G~Y~C  140 (633)
                      .+|.+..-|.. .+..|+..+|.|.+.|. | ...|+|++||..+..+...    ...+++   .....+..++.+.|+|
T Consensus         2 ~pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC   80 (100)
T d1muja1           2 EAPQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDC   80 (100)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEE
T ss_pred             CCCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEE
Confidence            35666554443 25578899999999885 3 4579999999988643211    112222   1122234567789999


Q ss_pred             EEEeCC
Q psy15127        141 DVENLV  146 (633)
Q Consensus       141 ~~~n~~  146 (633)
                      +|....
T Consensus        81 ~V~H~s   86 (100)
T d1muja1          81 KVEHWG   86 (100)
T ss_dssp             EEECTT
T ss_pred             EEEECC
Confidence            998653

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=0.00011  Score=55.27  Aligned_cols=77  Identities=19%  Similarity=0.184  Sum_probs=47.7

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEecc-C-CCeEEEEeCCccCCCCCeEE---cccce---EEEccCCCCCCeEEEE
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGD-P-LPTILWRRDDGKMPTGRAKI---LDDRS---LQIENVGPQDEGLYIC  140 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~-p-~p~i~W~~~~~~i~~~~~~~---~~~~~---L~i~~v~~~d~G~Y~C  140 (633)
                      ..+|.+...+... ...|+.++|.|.+.|. | ...|+|+++|..+.......   ..+++   .....+..++.+.|+|
T Consensus         2 ~~~P~V~v~~~~~-~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC   80 (99)
T d1lk2b_           2 QKTPQIQVYSRHP-PENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC   80 (99)
T ss_dssp             CBCCEEEEEESSC-CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEE
T ss_pred             CCCCEEEEEcCCC-ccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEE
Confidence            3456665433322 3468889999999885 3 34799999999886532211   12221   2222334567789999


Q ss_pred             EEEeCC
Q psy15127        141 DVENLV  146 (633)
Q Consensus       141 ~~~n~~  146 (633)
                      .|....
T Consensus        81 ~V~H~s   86 (99)
T d1lk2b_          81 RVKHDS   86 (99)
T ss_dssp             EEECTT
T ss_pred             EEEeCC
Confidence            998653

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.54  E-value=9.9e-05  Score=56.02  Aligned_cols=69  Identities=20%  Similarity=0.487  Sum_probs=48.0

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC------------------CCCCeEEccc-----ceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM------------------PTGRAKILDD-----RSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i------------------~~~~~~~~~~-----~~L~i~  128 (633)
                      .++....+++|++++|.|.+.|....  .+.|+|.  |+.+                  ..+|+.+..|     ..|.|.
T Consensus         5 ~esg~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~   84 (117)
T d1iqdb1           5 VQSGAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELS   84 (117)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeec
Confidence            34455668999999999999876433  4889884  3211                  1234444332     259999


Q ss_pred             cCCCCCCeEEEEEEEe
Q psy15127        129 NVGPQDEGLYICDVEN  144 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~n  144 (633)
                      +++.+|++.|.|....
T Consensus        85 ~L~~eDtAvYYCA~~~  100 (117)
T d1iqdb1          85 SLRSDDTAVYYCAVPD  100 (117)
T ss_dssp             SCCGGGCEEEEEEECS
T ss_pred             ccCcCcceEEEEeEcC
Confidence            9999999999998643

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.54  E-value=0.00013  Score=55.62  Aligned_cols=66  Identities=26%  Similarity=0.520  Sum_probs=46.8

Q ss_pred             CceEEEcCCeEEEEEEEeccCCC--eEEEEeCC--ccC------C-----------CCCeEEccc-----ceEEEccCCC
Q psy15127         79 SDATVLSGSVVEFVCRVGGDPLP--TILWRRDD--GKM------P-----------TGRAKILDD-----RSLQIENVGP  132 (633)
Q Consensus        79 ~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~~--~~i------~-----------~~~~~~~~~-----~~L~i~~v~~  132 (633)
                      ....+++|++++|.|.+.|....  .+.|+|.-  +.+      .           .+|+.+..|     -.|.|.+++.
T Consensus         7 g~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~   86 (119)
T d1kxvc_           7 GGGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKP   86 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCG
T ss_pred             CCceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCc
Confidence            34568999999999999876533  48998852  211      1           234444433     2599999999


Q ss_pred             CCCeEEEEEEEe
Q psy15127        133 QDEGLYICDVEN  144 (633)
Q Consensus       133 ~d~G~Y~C~~~n  144 (633)
                      +|++.|.|....
T Consensus        87 eDtA~YYCAr~~   98 (119)
T d1kxvc_          87 DDTAMYYCKPSL   98 (119)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCcceEeeeecc
Confidence            999999997643

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.54  E-value=0.00016  Score=55.64  Aligned_cols=67  Identities=22%  Similarity=0.400  Sum_probs=46.2

Q ss_pred             CCCceEEEcCCeEEEEEEEeccC----CCeEEEEeC--CccCC-----------------CCCeEEccc-----ceEEEc
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGDP----LPTILWRRD--DGKMP-----------------TGRAKILDD-----RSLQIE  128 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~p----~p~i~W~~~--~~~i~-----------------~~~~~~~~~-----~~L~i~  128 (633)
                      +.....+++|++++|.|.+.|..    ...+.|+|.  |+.+.                 .+|+....+     ..|.|.
T Consensus         6 qsg~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~   85 (120)
T d2agjh1           6 ESGPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLT   85 (120)
T ss_dssp             CCCCSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEE
T ss_pred             eECCeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEE
Confidence            33445578999999999987642    235899984  33220                 234444322     359999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy15127        129 NVGPQDEGLYICDVE  143 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~  143 (633)
                      +++.+|++.|.|...
T Consensus        86 ~l~~eDsAvYyCAr~  100 (120)
T d2agjh1          86 NLDPVDTATYYCART  100 (120)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             eeeeccceEEeeEec
Confidence            999999999999643

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.53  E-value=7.8e-05  Score=56.44  Aligned_cols=68  Identities=25%  Similarity=0.513  Sum_probs=47.4

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC-------C-----------CCCeEEccc-----ceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM-------P-----------TGRAKILDD-----RSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i-------~-----------~~~~~~~~~-----~~L~i~  128 (633)
                      .+.....+++|++++|.|.+.|....  .+.|+|.  |+.+       .           .+|+.+..|     -.|.+.
T Consensus         5 ~esG~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~   84 (117)
T d1jpth1           5 VESGGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMN   84 (117)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEeccc
Confidence            33445668999999999999986433  5889874  2211       1           234444432     248999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy15127        129 NVGPQDEGLYICDVE  143 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~  143 (633)
                      +++.+|++.|.|...
T Consensus        85 ~L~~eDTAvYYCAr~   99 (117)
T d1jpth1          85 SLRAEDTAVYYCARD   99 (117)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCCceEEEEeec
Confidence            999999999999653

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00013  Score=57.07  Aligned_cols=87  Identities=15%  Similarity=0.290  Sum_probs=52.9

Q ss_pred             eeEEecCCceEEEEEEEeee---cCCeeEEEECCEE-----EEeccC----CccceEEEcc-----CceEEEcCCCCCCC
Q psy15127        248 SLLIWNHPRVNRLSCFAEGS---PLPSVFWTQEGSQ-----VLMFPG----NAYGHLHVTQ-----EGTLRIQGVQKEDA  310 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~---p~~~v~W~~~g~~-----~~~~~~----~~~~~~~~~~-----~~~l~i~~~~~~d~  310 (633)
                      ..+...+|++++|.|.....   ....+.|+|....     +.....    ....+.....     ..+|.|.+++.+|+
T Consensus         7 ~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~Ds   86 (116)
T d1xeda_           7 EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDS   86 (116)
T ss_dssp             SEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCCC
Confidence            45667789999999986432   2346789874321     111100    1112222221     12699999999999


Q ss_pred             eEEEEEEEeCCceeEEEEEEEEEe
Q psy15127        311 GFFVCSALSVAGSTTVRAFLQVRE  334 (633)
Q Consensus       311 G~Y~C~a~n~~g~~~~~~~l~v~~  334 (633)
                      |.|.|.+..........+.|.|.+
T Consensus        87 G~Y~C~v~~~~~~~~~~v~L~V~~  110 (116)
T d1xeda_          87 GRYKCGLGINSRGLSFDVSLEVLE  110 (116)
T ss_dssp             EEEEEEESCGGGCCEEEEEEEEEC
T ss_pred             EEEEEEEEcCCCCceEeEEEEEEC
Confidence            999999865544445566777764

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.52  E-value=9.4e-05  Score=56.50  Aligned_cols=66  Identities=21%  Similarity=0.380  Sum_probs=46.9

Q ss_pred             CCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC------C-----------CCCeEEccc-----ceEEEccC
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM------P-----------TGRAKILDD-----RSLQIENV  130 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i------~-----------~~~~~~~~~-----~~L~i~~v  130 (633)
                      +...-.+++|++++|.|.+.|....  .+.|+|.  |+.+      .           .+|+.+..|     -.|.|.++
T Consensus         6 esG~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l   85 (120)
T d1dn0b1           6 QWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSV   85 (120)
T ss_dssp             EECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             eECCcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccc
Confidence            3344568999999999999986543  4889884  3222      1           235554432     24999999


Q ss_pred             CCCCCeEEEEEE
Q psy15127        131 GPQDEGLYICDV  142 (633)
Q Consensus       131 ~~~d~G~Y~C~~  142 (633)
                      +.+|++.|.|..
T Consensus        86 ~~eDtA~YYCAr   97 (120)
T d1dn0b1          86 TAADTAVYYCAR   97 (120)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccccccEEEEEe
Confidence            999999999943

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.52  E-value=0.00015  Score=54.94  Aligned_cols=68  Identities=22%  Similarity=0.443  Sum_probs=47.9

Q ss_pred             CCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC-------C----------CCCeEEccc-----ceEEEccC
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM-------P----------TGRAKILDD-----RSLQIENV  130 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i-------~----------~~~~~~~~~-----~~L~i~~v  130 (633)
                      +.....+++|++++|.|.+.|....  .+.|+|.  |+.+       .          .+|+.+..|     ..|.|.++
T Consensus         6 eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L   85 (116)
T d7fabh1           6 QSGPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSV   85 (116)
T ss_dssp             EECCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             eECCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccc
Confidence            3445568999999999999876433  5899884  3322       1          234444332     25999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy15127        131 GPQDEGLYICDVEN  144 (633)
Q Consensus       131 ~~~d~G~Y~C~~~n  144 (633)
                      +.+|++.|.|....
T Consensus        86 ~~eDtAvYyCAr~~   99 (116)
T d7fabh1          86 TAADTAVYYCARNL   99 (116)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             ccccceEEEeeeec
Confidence            99999999997643

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.51  E-value=8.9e-05  Score=55.39  Aligned_cols=66  Identities=24%  Similarity=0.453  Sum_probs=46.5

Q ss_pred             CCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC------C--------------CCCeEEccc-----ceEEE
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM------P--------------TGRAKILDD-----RSLQI  127 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i------~--------------~~~~~~~~~-----~~L~i  127 (633)
                      +.....+++|++++|.|.++|....  .+.|+|.  |+.+      .              .+|+.+..|     -.|.|
T Consensus         6 eSG~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i   85 (109)
T d2ck0h1           6 ESGGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQM   85 (109)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             eECCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecc
Confidence            3445668999999999999876433  5888873  3211      0              134444432     25999


Q ss_pred             ccCCCCCCeEEEEEE
Q psy15127        128 ENVGPQDEGLYICDV  142 (633)
Q Consensus       128 ~~v~~~d~G~Y~C~~  142 (633)
                      .+++.+|++.|.|..
T Consensus        86 ~sL~~eDTAvYYCAr  100 (109)
T d2ck0h1          86 NNLKTEDTGIYYCVR  100 (109)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cCCCHhHCEEEEEEE
Confidence            999999999999974

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.51  E-value=0.00014  Score=55.56  Aligned_cols=74  Identities=22%  Similarity=0.314  Sum_probs=47.8

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEEC--CE---EEEec----cCCccceEEEccC---ceEEEcCCCCCCCeEEE
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQE--GS---QVLMF----PGNAYGHLHVTQE---GTLRIQGVQKEDAGFFV  314 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~--g~---~~~~~----~~~~~~~~~~~~~---~~l~i~~~~~~d~G~Y~  314 (633)
                      +..+...+|++++|.|.........+.|++.  |.   .+...    ......+......   ..|.|.++..+|+|.|.
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~Yy   87 (108)
T d1jhll_           8 PSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYI   87 (108)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEE
T ss_pred             CCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEEE
Confidence            4456788999999999987665667999873  11   11100    0011112222222   27999999999999999


Q ss_pred             EEEEeC
Q psy15127        315 CSALSV  320 (633)
Q Consensus       315 C~a~n~  320 (633)
                      |.+.+.
T Consensus        88 CA~~~~   93 (108)
T d1jhll_          88 CQQHNE   93 (108)
T ss_dssp             EEECSS
T ss_pred             EeeCCC
Confidence            976543

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.51  E-value=0.00012  Score=55.25  Aligned_cols=68  Identities=22%  Similarity=0.534  Sum_probs=48.5

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC-------C-----------CCCeEEccc-----ceEEE
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM-------P-----------TGRAKILDD-----RSLQI  127 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i-------~-----------~~~~~~~~~-----~~L~i  127 (633)
                      +.++....+++|++++|.|.+.|....  .+.|+|.  |+.+       .           .+|+.+..|     -.|.|
T Consensus         4 L~esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~   83 (116)
T d1mjuh1           4 LQQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQL   83 (116)
T ss_dssp             EECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EeeECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecc
Confidence            356667789999999999999876443  4889883  3221       1           234444332     25899


Q ss_pred             ccCCCCCCeEEEEEE
Q psy15127        128 ENVGPQDEGLYICDV  142 (633)
Q Consensus       128 ~~v~~~d~G~Y~C~~  142 (633)
                      .+++.+|++.|.|..
T Consensus        84 ~sL~~eDtAvYYCAr   98 (116)
T d1mjuh1          84 SSLTSDDSAVYYCAN   98 (116)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccCCCCceEEEEcc
Confidence            999999999999964

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.50  E-value=9.3e-05  Score=56.17  Aligned_cols=67  Identities=18%  Similarity=0.478  Sum_probs=47.2

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC------C------------CCCeEEccc-----ceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM------P------------TGRAKILDD-----RSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i------~------------~~~~~~~~~-----~~L~i~  128 (633)
                      .++....+++|++++|.|.+.|....  .+.|+|.  |+.+      .            .+|+.+..|     ..|.|.
T Consensus         5 ~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~   84 (118)
T d2jelh1           5 AQSGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELA   84 (118)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccc
Confidence            45556678999999999999876543  5899884  3321      1            134333332     259999


Q ss_pred             cCCCCCCeEEEEEE
Q psy15127        129 NVGPQDEGLYICDV  142 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~  142 (633)
                      +++.+|++.|.|..
T Consensus        85 sL~~eDTAvYYCAr   98 (118)
T d2jelh1          85 RLTSEDSAIYYCAR   98 (118)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccccCcceeeeEEE
Confidence            99999999999953

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.50  E-value=0.00012  Score=55.91  Aligned_cols=68  Identities=19%  Similarity=0.528  Sum_probs=48.3

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC-------C-----------CCCeEEccc-----ceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM-------P-----------TGRAKILDD-----RSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i-------~-----------~~~~~~~~~-----~~L~i~  128 (633)
                      .++....+++|++++|.|.+.|....  .+.|+|.  |+.+       .           .+|+.+..+     -.|.|.
T Consensus         6 ~~sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~   85 (122)
T d1vgeh1           6 EQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLS   85 (122)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EecCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeeccc
Confidence            44566679999999999999876433  5899884  2221       0           234444332     249999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy15127        129 NVGPQDEGLYICDVE  143 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~  143 (633)
                      +++.+|++.|.|...
T Consensus        86 ~L~~eDtA~YYCAr~  100 (122)
T d1vgeh1          86 SLRPEDTAVYYCARD  100 (122)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEeec
Confidence            999999999999764

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.50  E-value=0.00054  Score=52.73  Aligned_cols=33  Identities=24%  Similarity=0.541  Sum_probs=24.3

Q ss_pred             ccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEEC
Q psy15127        165 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKN  199 (633)
Q Consensus       165 ~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~  199 (633)
                      .+.|....+.+|++++|.|.. .+ ....+.|+|.
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~-~~-~~~~~~WYrQ   35 (111)
T d2esve1           3 TQFPSHSVIEKGQTVTLRCDP-IS-GHDNLYWYRR   35 (111)
T ss_dssp             EEECSEEEEETTCCEEEEEEC-CT-TCSEEEEEEE
T ss_pred             EECCCEEEECCCCCEEEEEEE-CC-CCceEEEEEE
Confidence            345777888999999999983 32 2357899873

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.50  E-value=0.0001  Score=55.82  Aligned_cols=67  Identities=25%  Similarity=0.520  Sum_probs=47.4

Q ss_pred             CCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC-------C----------CCCeEEccc-----ceEEEccC
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM-------P----------TGRAKILDD-----RSLQIENV  130 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i-------~----------~~~~~~~~~-----~~L~i~~v  130 (633)
                      +.....+++|++++|.|.+.|....  .+.|+|.  |+.+       .          .+|+.+..+     ..|.|.++
T Consensus         6 eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL   85 (117)
T d1c5db1           6 ESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL   85 (117)
T ss_dssp             EECCSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSC
T ss_pred             eECCceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeecccccc
Confidence            3344568999999999999876443  5899884  3332       0          234444432     25999999


Q ss_pred             CCCCCeEEEEEEE
Q psy15127        131 GPQDEGLYICDVE  143 (633)
Q Consensus       131 ~~~d~G~Y~C~~~  143 (633)
                      +.+|++.|.|...
T Consensus        86 ~~eDtAvYYCAr~   98 (117)
T d1c5db1          86 QTEDTAIYFCTRE   98 (117)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             ccCcceEEEEecc
Confidence            9999999999643

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.49  E-value=0.00011  Score=56.35  Aligned_cols=68  Identities=19%  Similarity=0.454  Sum_probs=47.3

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeC--CccC-------C-----------CCCeEEccc-----ceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRD--DGKM-------P-----------TGRAKILDD-----RSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~--~~~i-------~-----------~~~~~~~~~-----~~L~i~  128 (633)
                      .++....+++|++++|.|.+.|..  .-.+.|+|.  |+.+       .           .+|+.+..+     -.|.|.
T Consensus         5 ~qsg~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~   84 (120)
T d1pg7x1           5 QQSGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELV   84 (120)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEcccc
Confidence            444555689999999999998754  335899884  3321       0           234433322     249999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy15127        129 NVGPQDEGLYICDVE  143 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~  143 (633)
                      +++.+|++.|.|...
T Consensus        85 ~l~~eDtA~YYCAr~   99 (120)
T d1pg7x1          85 RLTSNDSAVYYCARE   99 (120)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEeeec
Confidence            999999999999864

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.49  E-value=0.00011  Score=55.93  Aligned_cols=68  Identities=15%  Similarity=0.453  Sum_probs=47.6

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccCC--CeEEEEeC--CccC-------C-----------CCCeEEccc-----ceEEE
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDPL--PTILWRRD--DGKM-------P-----------TGRAKILDD-----RSLQI  127 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p~--p~i~W~~~--~~~i-------~-----------~~~~~~~~~-----~~L~i  127 (633)
                      +.++....+++|++++|.|.+.|...  -.+.|+|.  |+.+       .           .+++.+..+     ..|.|
T Consensus         4 L~qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i   83 (117)
T d1mfah1           4 VQQSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMEL   83 (117)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             EEeECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeee
Confidence            35566777899999999999987543  35888873  3321       0           123343322     25999


Q ss_pred             ccCCCCCCeEEEEEE
Q psy15127        128 ENVGPQDEGLYICDV  142 (633)
Q Consensus       128 ~~v~~~d~G~Y~C~~  142 (633)
                      .+++.+|++.|.|..
T Consensus        84 ~~L~~eDtAvYYCAr   98 (117)
T d1mfah1          84 SSLTSEDSAVYYCTR   98 (117)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccCCCcceEEEEec
Confidence            999999999999964

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.49  E-value=9.7e-05  Score=56.18  Aligned_cols=67  Identities=19%  Similarity=0.426  Sum_probs=45.9

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeC--CccC------C------------CCCeEEccc-----ceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRD--DGKM------P------------TGRAKILDD-----RSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~--~~~i------~------------~~~~~~~~~-----~~L~i~  128 (633)
                      .+.....+++|++++|.|.+.|..  .-.+.|+|.  |+.+      .            .+|+.+..+     ..|.|.
T Consensus         5 ~esg~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~   84 (115)
T d1f3dh1           5 QQSGPELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLN   84 (115)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             EeECCcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeee
Confidence            344445689999999999998753  335899884  3221      1            123333322     249999


Q ss_pred             cCCCCCCeEEEEEE
Q psy15127        129 NVGPQDEGLYICDV  142 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~  142 (633)
                      +++.+|++.|.|..
T Consensus        85 ~l~~eDtAvYYCAr   98 (115)
T d1f3dh1          85 SLTFEDSAVYYCAN   98 (115)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ecCcCCcEEEEEec
Confidence            99999999999964

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.48  E-value=0.00018  Score=55.05  Aligned_cols=73  Identities=19%  Similarity=0.207  Sum_probs=48.2

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEEC--CEE---EEec----cCCccceEEEc---cCceEEEcCCCCCCCeEEE
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQE--GSQ---VLMF----PGNAYGHLHVT---QEGTLRIQGVQKEDAGFFV  314 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~--g~~---~~~~----~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~  314 (633)
                      +..+.+.+|++|+|.|.........+.|++.  +..   +...    ......++...   ....|.|.++..+|+|.|.
T Consensus         8 P~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~Yy   87 (107)
T d1kcvl1           8 PKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYY   87 (107)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceEE
Confidence            3456788899999999987766667999973  221   1100    00111222222   2336999999999999999


Q ss_pred             EEEEe
Q psy15127        315 CSALS  319 (633)
Q Consensus       315 C~a~n  319 (633)
                      |.+..
T Consensus        88 Ca~~~   92 (107)
T d1kcvl1          88 CGQSY   92 (107)
T ss_dssp             EEECS
T ss_pred             EEecC
Confidence            98753

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.46  E-value=0.00011  Score=56.09  Aligned_cols=73  Identities=19%  Similarity=0.286  Sum_probs=48.8

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEEC--CE--EEEec-----cCCccceEEEcc---CceEEEcCCCCCCCeEEE
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQE--GS--QVLMF-----PGNAYGHLHVTQ---EGTLRIQGVQKEDAGFFV  314 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~--g~--~~~~~-----~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~  314 (633)
                      +..+.+.+|++++|.|...+.....+.|++.  |.  .+...     ......++....   ...|.|.++..+|+|.|.
T Consensus         8 P~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (107)
T d1ospl1           8 SSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATYF   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcEE
Confidence            3456678899999999987666567999983  21  11100     111223443332   237999999999999999


Q ss_pred             EEEEe
Q psy15127        315 CSALS  319 (633)
Q Consensus       315 C~a~n  319 (633)
                      |.+..
T Consensus        88 Ca~~~   92 (107)
T d1ospl1          88 CQQYW   92 (107)
T ss_dssp             EEECS
T ss_pred             Eeecc
Confidence            98754

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.46  E-value=0.00015  Score=55.63  Aligned_cols=68  Identities=24%  Similarity=0.515  Sum_probs=47.5

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCC--CeEEEEeC--CccC-------C-----------CCCeEEccc-----ceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPL--PTILWRRD--DGKM-------P-----------TGRAKILDD-----RSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~--p~i~W~~~--~~~i-------~-----------~~~~~~~~~-----~~L~i~  128 (633)
                      .+.....+++|++++|.|.+.|...  -.+.|+|.  |+.+       .           .+|+.+..+     ..|.|.
T Consensus         5 ~esg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~   84 (121)
T d1j05b_           5 QQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLT   84 (121)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeeccc
Confidence            3455566899999999999987543  35899884  3322       1           224444322     249999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy15127        129 NVGPQDEGLYICDVE  143 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~  143 (633)
                      +++.+|++.|.|...
T Consensus        85 ~L~~eDtAvYYCAr~   99 (121)
T d1j05b_          85 SLTSEDTAVYYCAPF   99 (121)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCcCcceEEEeEee
Confidence            999999999999754

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.46  E-value=0.0002  Score=55.73  Aligned_cols=35  Identities=29%  Similarity=0.489  Sum_probs=25.9

Q ss_pred             cccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEE
Q psy15127        164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKK  198 (633)
Q Consensus       164 ~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~  198 (633)
                      +...|....+.+|++++|.|..........+.|+|
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyr   37 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYR   37 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEE
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEE
Confidence            34567778889999999999743344456788987

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00021  Score=53.69  Aligned_cols=77  Identities=17%  Similarity=0.220  Sum_probs=48.2

Q ss_pred             CcCCeeeeCCCceEEEcCCeEEEEEEEecc-CC-CeEEEEeCCccCCCCC---eEEcccce---EEEccCCCCCCeEEEE
Q psy15127         69 LIKPFPISEPSDATVLSGSVVEFVCRVGGD-PL-PTILWRRDDGKMPTGR---AKILDDRS---LQIENVGPQDEGLYIC  140 (633)
Q Consensus        69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~-p~-p~i~W~~~~~~i~~~~---~~~~~~~~---L~i~~v~~~d~G~Y~C  140 (633)
                      ..+|.+..-+.. .+..|+.++|.|.+.|. |. ..|+|.+||..+....   .....+++   .....+..+|.+.|+|
T Consensus         3 ~~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC   81 (100)
T d1k5nb_           3 QRTPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYAC   81 (100)
T ss_dssp             CBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEE
T ss_pred             cCCCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEE
Confidence            345665443222 24578999999999985 43 3799999999885421   12222332   2222345667889999


Q ss_pred             EEEeCC
Q psy15127        141 DVENLV  146 (633)
Q Consensus       141 ~~~n~~  146 (633)
                      .+....
T Consensus        82 ~V~H~s   87 (100)
T d1k5nb_          82 RVNHVT   87 (100)
T ss_dssp             EEECTT
T ss_pred             EEEeCC
Confidence            998653

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.45  E-value=0.00016  Score=55.63  Aligned_cols=67  Identities=19%  Similarity=0.485  Sum_probs=47.8

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC-------C-----------CCCeEEccc-----ceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM-------P-----------TGRAKILDD-----RSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i-------~-----------~~~~~~~~~-----~~L~i~  128 (633)
                      .++....+++|++++|.|.+.|....  .+.|+|.  |+.+       +           .+|+.+..|     -.|.|.
T Consensus         5 ~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~   84 (127)
T d1n0xh1           5 VQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELR   84 (127)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEE
Confidence            45566779999999999999986433  4899883  3322       1           234444432     248999


Q ss_pred             cCCCCCCeEEEEEE
Q psy15127        129 NVGPQDEGLYICDV  142 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~  142 (633)
                      +++.+|++.|.|.-
T Consensus        85 ~L~~eDtAvYYCAR   98 (127)
T d1n0xh1          85 SLRSADTAVYYCAR   98 (127)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCCceEEEEEe
Confidence            99999999999963

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.45  E-value=0.00013  Score=55.52  Aligned_cols=67  Identities=21%  Similarity=0.483  Sum_probs=47.3

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC------C------------CCCeEEccc-----ceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM------P------------TGRAKILDD-----RSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i------~------------~~~~~~~~~-----~~L~i~  128 (633)
                      .+.....+++|++++|.|.+.|....  .+.|+|.  |+.+      .            .+|+.+..|     -.|.|.
T Consensus         5 ~esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~   84 (119)
T d1eapb1           5 QESGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLN   84 (119)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeee
Confidence            44556678999999999999876433  4899874  3221      1            234444322     259999


Q ss_pred             cCCCCCCeEEEEEE
Q psy15127        129 NVGPQDEGLYICDV  142 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~  142 (633)
                      +++.+|++.|.|..
T Consensus        85 sL~~eDTAvYYCAr   98 (119)
T d1eapb1          85 SLTSEDSAVYFCKR   98 (119)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             cccCCcceEEEEEE
Confidence            99999999999964

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.45  E-value=0.00013  Score=55.18  Aligned_cols=68  Identities=22%  Similarity=0.477  Sum_probs=47.8

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC------------------CCCCeEEccc-----ceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM------------------PTGRAKILDD-----RSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i------------------~~~~~~~~~~-----~~L~i~  128 (633)
                      .+.....+++|++++|.|.++|....  .+.|+|.  |+.+                  -.+|+.+..|     -.|.|.
T Consensus         5 ~esG~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~   84 (117)
T d1jnhb1           5 QQSGAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLN   84 (117)
T ss_dssp             EECCCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeeccc
Confidence            34445567899999999999986444  5899883  3221                  1245555433     259999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy15127        129 NVGPQDEGLYICDVE  143 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~  143 (633)
                      +++.+|++.|.|...
T Consensus        85 ~L~~eDTAvYYCAr~   99 (117)
T d1jnhb1          85 SLTSEDSAVYSCSRG   99 (117)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEeec
Confidence            999999999999653

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.44  E-value=0.0002  Score=54.33  Aligned_cols=69  Identities=25%  Similarity=0.452  Sum_probs=48.3

Q ss_pred             CCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC-------C-----------CCCeEEccc-----ceEEEcc
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM-------P-----------TGRAKILDD-----RSLQIEN  129 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i-------~-----------~~~~~~~~~-----~~L~i~~  129 (633)
                      +.....+++|++++|.|.+.|....  .+.|+|.  |+.+       .           .+|+.+..|     -.|.|.+
T Consensus         6 eSG~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~s   85 (118)
T d2fbjh1           6 ESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSK   85 (118)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccc
Confidence            3345568999999999999886543  4889874  3211       1           234444433     2499999


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy15127        130 VGPQDEGLYICDVENL  145 (633)
Q Consensus       130 v~~~d~G~Y~C~~~n~  145 (633)
                      ++.+|++.|.|.....
T Consensus        86 L~~eDtAvYYCAr~~~  101 (118)
T d2fbjh1          86 VRSEDTALYYCARLHY  101 (118)
T ss_dssp             CCGGGCEEEEEEEEET
T ss_pred             cCCCcceEEEeeEecC
Confidence            9999999999986543

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.0002  Score=54.76  Aligned_cols=74  Identities=19%  Similarity=0.282  Sum_probs=49.5

Q ss_pred             EEecCCceEEEEEEEeeecC----CeeEEEECCEEEEeccCC-------ccceEEEc--cCceEEEcCCCCCCCeEEEEE
Q psy15127        250 LIWNHPRVNRLSCFAEGSPL----PSVFWTQEGSQVLMFPGN-------AYGHLHVT--QEGTLRIQGVQKEDAGFFVCS  316 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~p~----~~v~W~~~g~~~~~~~~~-------~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~  316 (633)
                      +....|++++|.|.......    ..+.|.+++..+......       ...+....  ++.+|.|.+++.+|+|.|.|.
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~   83 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV   83 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEE
Confidence            34567899999998654322    467899888765322211       11233333  244899999999999999999


Q ss_pred             EEeCCce
Q psy15127        317 ALSVAGS  323 (633)
Q Consensus       317 a~n~~g~  323 (633)
                      +.+..+.
T Consensus        84 V~~~~~~   90 (105)
T d1dr9a1          84 VLKYEKD   90 (105)
T ss_dssp             EEECCTT
T ss_pred             EEeCCCC
Confidence            9765443

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.44  E-value=0.00018  Score=54.83  Aligned_cols=68  Identities=22%  Similarity=0.559  Sum_probs=47.7

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC-------C-----------CCCeEEccc-----ceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM-------P-----------TGRAKILDD-----RSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i-------~-----------~~~~~~~~~-----~~L~i~  128 (633)
                      .+.....+++|++++|.|.+.|....  .+.|+|.  |+.+       .           .+|+.+..|     ..|.|.
T Consensus         5 ~esg~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~   84 (119)
T d1rz7h1           5 VQSGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELS   84 (119)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeee
Confidence            34455668999999999999986543  5899874  2211       0           234444332     259999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy15127        129 NVGPQDEGLYICDVE  143 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~  143 (633)
                      +++.+|++.|.|...
T Consensus        85 sL~~eDTAvYYCAr~   99 (119)
T d1rz7h1          85 SLRSEDTAVYYCAAD   99 (119)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ccCcccceEEEEeec
Confidence            999999999999753

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.43  E-value=0.00029  Score=54.93  Aligned_cols=74  Identities=23%  Similarity=0.532  Sum_probs=49.3

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEEC--CEEEEec------------cCCccceEEEcc----CceEEEcCCCCC
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQE--GSQVLMF------------PGNAYGHLHVTQ----EGTLRIQGVQKE  308 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~--g~~~~~~------------~~~~~~~~~~~~----~~~l~i~~~~~~  308 (633)
                      +..+.+.+|++++|.|...+.....+.|+|.  |+.+...            ......++....    ...|.|.++..+
T Consensus         8 P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~   87 (118)
T d2ij0c1           8 PSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPE   87 (118)
T ss_dssp             CSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGG
T ss_pred             CCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccccc
Confidence            3456778899999999987766678999983  3221110            111122333321    125999999999


Q ss_pred             CCeEEEEEEEeC
Q psy15127        309 DAGFFVCSALSV  320 (633)
Q Consensus       309 d~G~Y~C~a~n~  320 (633)
                      |+|.|.|.+...
T Consensus        88 Dsa~YyCa~~~~   99 (118)
T d2ij0c1          88 DSGFYVCSALAG   99 (118)
T ss_dssp             GCEEEEEEEECS
T ss_pred             cCceEEEEEecC
Confidence            999999998654

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.43  E-value=0.00016  Score=56.01  Aligned_cols=70  Identities=14%  Similarity=0.284  Sum_probs=50.0

Q ss_pred             eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC--CccC-------CC----------CCeEE--cccceEEEccCCC
Q psy15127         74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD--DGKM-------PT----------GRAKI--LDDRSLQIENVGP  132 (633)
Q Consensus        74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~--~~~i-------~~----------~~~~~--~~~~~L~i~~v~~  132 (633)
                      +...|..+.+.+|++++|.|.....-...+.|||.  |+.+       ..          .++..  ..+..|.|..++.
T Consensus         4 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~   83 (112)
T d1fo0b_           4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANM   83 (112)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESC
T ss_pred             EEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCc
Confidence            45668888899999999999986544567999995  3221       01          11111  1235799999999


Q ss_pred             CCCeEEEEEEE
Q psy15127        133 QDEGLYICDVE  143 (633)
Q Consensus       133 ~d~G~Y~C~~~  143 (633)
                      +|++.|.|.+.
T Consensus        84 ~dsa~Y~Ca~~   94 (112)
T d1fo0b_          84 SQGRTLYCTCS   94 (112)
T ss_dssp             CSCEEEEEEEE
T ss_pred             cCCccEEEEEe
Confidence            99999999965

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.43  E-value=0.00026  Score=54.72  Aligned_cols=67  Identities=24%  Similarity=0.492  Sum_probs=47.2

Q ss_pred             CCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC-------C-----------CCCeEEccc-----ceEEEcc
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM-------P-----------TGRAKILDD-----RSLQIEN  129 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i-------~-----------~~~~~~~~~-----~~L~i~~  129 (633)
                      +.....+++|++++|.|.+.|....  .+.|+|.  |+.+       .           .+|+.+..|     -.|.|.+
T Consensus         6 eSG~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~   85 (135)
T d1ieha_           6 ASGGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNS   85 (135)
T ss_dssp             EECCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEES
T ss_pred             eECCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEee
Confidence            3445568999999999999876433  4889874  3222       1           234444433     2599999


Q ss_pred             CCCCCCeEEEEEEE
Q psy15127        130 VGPQDEGLYICDVE  143 (633)
Q Consensus       130 v~~~d~G~Y~C~~~  143 (633)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (135)
T d1ieha_          86 LKSEDTAVYYCAKY   99 (135)
T ss_dssp             CCSSSCEEEEEEEB
T ss_pred             eCcccceeeEEEEe
Confidence            99999999999754

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.42  E-value=0.00012  Score=55.42  Aligned_cols=67  Identities=24%  Similarity=0.413  Sum_probs=46.7

Q ss_pred             CCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC------C-----------CCCeEEccc-----ceEEEccC
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM------P-----------TGRAKILDD-----RSLQIENV  130 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i------~-----------~~~~~~~~~-----~~L~i~~v  130 (633)
                      +.....+++|++++|.|.+.|....  .+.|+|.  |+.+      .           .+|+.+..|     -.|.|.++
T Consensus         6 esG~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l   85 (116)
T d1a2yb_           6 ESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSL   85 (116)
T ss_dssp             EECCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSC
T ss_pred             eECCceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeee
Confidence            3344568999999999999876433  5889884  3322      1           123333322     25999999


Q ss_pred             CCCCCeEEEEEEE
Q psy15127        131 GPQDEGLYICDVE  143 (633)
Q Consensus       131 ~~~d~G~Y~C~~~  143 (633)
                      +.+|++.|.|...
T Consensus        86 ~~eDTAvYYCAr~   98 (116)
T d1a2yb_          86 HTDDTARYYCARE   98 (116)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             eeccceEEEEEEe
Confidence            9999999999754

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.42  E-value=0.00024  Score=54.14  Aligned_cols=73  Identities=22%  Similarity=0.292  Sum_probs=48.1

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEECC--E--EEEec-----cCCccceEEEc---cCceEEEcCCCCCCCeEEE
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEG--S--QVLMF-----PGNAYGHLHVT---QEGTLRIQGVQKEDAGFFV  314 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g--~--~~~~~-----~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~  314 (633)
                      +..+.+.+|++++|.|...+.-...+.|++..  +  .+...     ......++...   ....|.|.++..+|+|.|.
T Consensus         7 P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy   86 (106)
T d1op3k1           7 PSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYH   86 (106)
T ss_dssp             CSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcEe
Confidence            34567889999999999876666679999742  1  11100     11111233222   2236999999999999999


Q ss_pred             EEEEe
Q psy15127        315 CSALS  319 (633)
Q Consensus       315 C~a~n  319 (633)
                      |.+..
T Consensus        87 Ca~~~   91 (106)
T d1op3k1          87 CQHYA   91 (106)
T ss_dssp             EEEEC
T ss_pred             eeeCC
Confidence            98754

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.41  E-value=0.00021  Score=54.62  Aligned_cols=73  Identities=19%  Similarity=0.272  Sum_probs=47.9

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEEC--CEE---EEec----cCCccceEEEc---cCceEEEcCCCCCCCeEEE
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQE--GSQ---VLMF----PGNAYGHLHVT---QEGTLRIQGVQKEDAGFFV  314 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~--g~~---~~~~----~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~  314 (633)
                      +..+.+.+|++++|.|.........+.|++.  |..   +...    ......++...   ....|.|.++.++|++.|.
T Consensus         8 p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~Yy   87 (107)
T d1mexl1           8 QKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEYF   87 (107)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeEE
Confidence            3456778999999999986665567999973  221   1110    01111233332   2236999999999999999


Q ss_pred             EEEEe
Q psy15127        315 CSALS  319 (633)
Q Consensus       315 C~a~n  319 (633)
                      |.+..
T Consensus        88 Ca~~~   92 (107)
T d1mexl1          88 CQQYN   92 (107)
T ss_dssp             EEECS
T ss_pred             EeECC
Confidence            98654

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.41  E-value=0.00061  Score=52.80  Aligned_cols=75  Identities=17%  Similarity=0.283  Sum_probs=49.4

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEEC--CE--EEEeccC-----CccceEEEcc-----CceEEEcCCCCCCCeE
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQE--GS--QVLMFPG-----NAYGHLHVTQ-----EGTLRIQGVQKEDAGF  312 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~--g~--~~~~~~~-----~~~~~~~~~~-----~~~l~i~~~~~~d~G~  312 (633)
                      +..+.+.+|+.++|.|.........+.|+|.  |+  .+.....     ....+.....     ...|.|.+++++|+|.
T Consensus         8 ~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~   87 (115)
T d1lp9e1           8 EGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSAL   87 (115)
T ss_dssp             CSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCcc
Confidence            3456678899999999988777778999983  22  1110000     0112222221     2259999999999999


Q ss_pred             EEEEEEeCC
Q psy15127        313 FVCSALSVA  321 (633)
Q Consensus       313 Y~C~a~n~~  321 (633)
                      |.|.+....
T Consensus        88 YyCa~~~~~   96 (115)
T d1lp9e1          88 YYCALFLAS   96 (115)
T ss_dssp             EEEEEEECS
T ss_pred             ceEEEEcCC
Confidence            999886543

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.41  E-value=0.00016  Score=55.90  Aligned_cols=68  Identities=21%  Similarity=0.509  Sum_probs=47.6

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC-------C-----------CCCeEEccc-----ceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM-------P-----------TGRAKILDD-----RSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i-------~-----------~~~~~~~~~-----~~L~i~  128 (633)
                      .++....+++|++++|.|.+.|....  .+.|+|.  |+.+       .           .+|+.+..|     -.|.|.
T Consensus         5 ~esg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~   84 (125)
T d1rihh1           5 QQSGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLN   84 (125)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeee
Confidence            44556678999999999999875433  5888874  3221       1           234444332     249999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy15127        129 NVGPQDEGLYICDVE  143 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~  143 (633)
                      +++.+|++.|.|...
T Consensus        85 sL~~eDtAvYYCAR~   99 (125)
T d1rihh1          85 SLTSEDSAVYYCARE   99 (125)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCcccceEEEEeee
Confidence            999999999999754

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.40  E-value=0.00026  Score=54.21  Aligned_cols=72  Identities=18%  Similarity=0.263  Sum_probs=47.6

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEEC--CE--E-EEec----cCCccceEEEc---cCceEEEcCCCCCCCeEEE
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQE--GS--Q-VLMF----PGNAYGHLHVT---QEGTLRIQGVQKEDAGFFV  314 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~--g~--~-~~~~----~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~  314 (633)
                      +..+...+|++++|.|.........+.|++.  |+  . +...    ......++...   ....|.|.++..+|+|.|.
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~Yy   87 (109)
T d1mqkl_           8 PVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYY   87 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeEE
Confidence            3456678899999999987665667999982  22  1 1100    11112233222   2336999999999999999


Q ss_pred             EEEE
Q psy15127        315 CSAL  318 (633)
Q Consensus       315 C~a~  318 (633)
                      |.+.
T Consensus        88 CA~~   91 (109)
T d1mqkl_          88 CQHH   91 (109)
T ss_dssp             EEEC
T ss_pred             Eeee
Confidence            9875

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.40  E-value=0.00018  Score=55.17  Aligned_cols=67  Identities=25%  Similarity=0.518  Sum_probs=47.5

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC-------C-----------CCCeEEccc-----ceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM-------P-----------TGRAKILDD-----RSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i-------~-----------~~~~~~~~~-----~~L~i~  128 (633)
                      .++....+++|++++|.|.+.|....  .+.|+|.  |+.+       .           .+|+.+..|     -.|.|.
T Consensus         5 ~esg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~   84 (124)
T d2b1hh1           5 EQSGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWS   84 (124)
T ss_dssp             EECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEES
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeee
Confidence            45556678999999999999986533  4789883  3211       1           234444332     259999


Q ss_pred             cCCCCCCeEEEEEE
Q psy15127        129 NVGPQDEGLYICDV  142 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~  142 (633)
                      +++.+|++.|.|..
T Consensus        85 ~L~~eDTA~YYCAR   98 (124)
T d2b1hh1          85 SLKPSDTALYYCAR   98 (124)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccccccceEEEEee
Confidence            99999999999954

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.40  E-value=0.00022  Score=54.30  Aligned_cols=65  Identities=25%  Similarity=0.488  Sum_probs=45.9

Q ss_pred             CceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC-------C-----------CCCeEEccc-----ceEEEccCC
Q psy15127         79 SDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM-------P-----------TGRAKILDD-----RSLQIENVG  131 (633)
Q Consensus        79 ~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i-------~-----------~~~~~~~~~-----~~L~i~~v~  131 (633)
                      ....+++|++++|.|.++|....  .+.|+|.  |+.+       .           .+|+.+..|     -.|.|.+++
T Consensus         8 G~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~   87 (121)
T d2p49b1           8 GGGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLK   87 (121)
T ss_dssp             ECEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecc
Confidence            34568999999999999875433  5889884  3221       0           234444432     249999999


Q ss_pred             CCCCeEEEEEEE
Q psy15127        132 PQDEGLYICDVE  143 (633)
Q Consensus       132 ~~d~G~Y~C~~~  143 (633)
                      .+|++.|.|...
T Consensus        88 ~eDtAvYYCAr~   99 (121)
T d2p49b1          88 PEDTATYYCAAG   99 (121)
T ss_dssp             GGGCEEEEEEES
T ss_pred             ccceeEEeeecc
Confidence            999999999753

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.40  E-value=0.00012  Score=57.13  Aligned_cols=74  Identities=19%  Similarity=0.289  Sum_probs=47.5

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEE--CCE--E-EEec-cCC------ccceEEEc---cCceEEEcCCCCCCCe
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQ--EGS--Q-VLMF-PGN------AYGHLHVT---QEGTLRIQGVQKEDAG  311 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~--~g~--~-~~~~-~~~------~~~~~~~~---~~~~l~i~~~~~~d~G  311 (633)
                      +..+.+.+|++++|.|.........+.|++  .|.  . +... ...      ...+....   ....|.|.++..+|+|
T Consensus         7 ~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg   86 (115)
T d1i9ea_           7 DARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSA   86 (115)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCE
T ss_pred             CCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccc
Confidence            345678899999999998766667888997  222  1 1110 110      00111111   1236999999999999


Q ss_pred             EEEEEEEeC
Q psy15127        312 FFVCSALSV  320 (633)
Q Consensus       312 ~Y~C~a~n~  320 (633)
                      .|.|.+...
T Consensus        87 ~YyCa~~~~   95 (115)
T d1i9ea_          87 VYFCAVSGF   95 (115)
T ss_dssp             EEEEEEEET
T ss_pred             eecccccCC
Confidence            999987643

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.40  E-value=0.00018  Score=55.15  Aligned_cols=67  Identities=21%  Similarity=0.502  Sum_probs=45.8

Q ss_pred             CCCceEEEcCCeEEEEEEEeccCC--CeEEEEeC--CccC------C------------CCCeEEccc-----ceEEEcc
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGDPL--PTILWRRD--DGKM------P------------TGRAKILDD-----RSLQIEN  129 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~p~--p~i~W~~~--~~~i------~------------~~~~~~~~~-----~~L~i~~  129 (633)
                      ++....+++|++++|.|.+.|...  -.+.|+|.  |+.+      .            .+|+.+..+     ..|.|.+
T Consensus         6 esg~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~   85 (119)
T d1qnzh_           6 QSGAELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSR   85 (119)
T ss_dssp             EECCCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEE
T ss_pred             eECCceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecc
Confidence            334446889999999999987532  25899884  3322      0            134444321     2499999


Q ss_pred             CCCCCCeEEEEEEE
Q psy15127        130 VGPQDEGLYICDVE  143 (633)
Q Consensus       130 v~~~d~G~Y~C~~~  143 (633)
                      ++.+|++.|.|...
T Consensus        86 L~~eDsAvYYCA~~   99 (119)
T d1qnzh_          86 LTSDDSAVYYCAIH   99 (119)
T ss_dssp             ECGGGCEEEEEEEC
T ss_pred             cCccceeEEEEEEe
Confidence            99999999999653

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.39  E-value=0.00027  Score=53.91  Aligned_cols=70  Identities=20%  Similarity=0.331  Sum_probs=46.7

Q ss_pred             eEEecCCceEEEEEEEeeecCCeeEEEEC--CE--E-EEec----cCCccceEEEcc---CceEEEcCCCCCCCeEEEEE
Q psy15127        249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQE--GS--Q-VLMF----PGNAYGHLHVTQ---EGTLRIQGVQKEDAGFFVCS  316 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~--g~--~-~~~~----~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~  316 (633)
                      .+.+.+|++++|.|...+.....+.|++.  |.  . +...    ......++....   ...|.|.++..+|+|.|.|.
T Consensus         9 s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa   88 (106)
T d1lk3l1           9 ALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQ   88 (106)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcccc
Confidence            46778999999999997666667999973  21  1 1110    011122333322   23799999999999999997


Q ss_pred             EE
Q psy15127        317 AL  318 (633)
Q Consensus       317 a~  318 (633)
                      +.
T Consensus        89 ~~   90 (106)
T d1lk3l1          89 QS   90 (106)
T ss_dssp             EC
T ss_pred             cc
Confidence            54

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.39  E-value=0.00015  Score=54.64  Aligned_cols=65  Identities=28%  Similarity=0.566  Sum_probs=45.6

Q ss_pred             CCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--Ccc------C-C-----------CCCeEEccc-----ceEEEccC
Q psy15127         78 PSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGK------M-P-----------TGRAKILDD-----RSLQIENV  130 (633)
Q Consensus        78 ~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~------i-~-----------~~~~~~~~~-----~~L~i~~v  130 (633)
                      .....+++|++++|.|.+.|....  .+.|+|.  |+.      | .           .+|+.+..+     -.|.|.++
T Consensus         7 SG~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L   86 (114)
T d1indh1           7 SGGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSL   86 (114)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeee
Confidence            344568999999999999876433  5889884  221      1 1           234444332     24999999


Q ss_pred             CCCCCeEEEEEE
Q psy15127        131 GPQDEGLYICDV  142 (633)
Q Consensus       131 ~~~d~G~Y~C~~  142 (633)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYYCA~   98 (114)
T d1indh1          87 RSEDTALYFCAS   98 (114)
T ss_dssp             CGGGCEEEEEEC
T ss_pred             ccCcccEEEECC
Confidence            999999999964

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.38  E-value=0.0002  Score=54.99  Aligned_cols=67  Identities=19%  Similarity=0.484  Sum_probs=47.8

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC-------C-----------CCCeEEccc-----ceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM-------P-----------TGRAKILDD-----RSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i-------~-----------~~~~~~~~~-----~~L~i~  128 (633)
                      .++....+++|+++.|.|.+.|....  .+.|+|.  |+.+       .           .+|+.+..|     -.|.|.
T Consensus         4 ~esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~   83 (126)
T d1lmka1           4 QQSGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLS   83 (126)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeec
Confidence            45566678999999999999886443  4889873  3221       1           244444332     259999


Q ss_pred             cCCCCCCeEEEEEE
Q psy15127        129 NVGPQDEGLYICDV  142 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~  142 (633)
                      +++.+|++.|.|..
T Consensus        84 ~L~~eDTAvYYCAr   97 (126)
T d1lmka1          84 SLTSEDSAVYYCAR   97 (126)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEee
Confidence            99999999999964

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.38  E-value=0.00024  Score=54.28  Aligned_cols=73  Identities=23%  Similarity=0.350  Sum_probs=48.0

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEEC--CE--EEEec-----cCCccceEEEc---cCceEEEcCCCCCCCeEEE
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQE--GS--QVLMF-----PGNAYGHLHVT---QEGTLRIQGVQKEDAGFFV  314 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~--g~--~~~~~-----~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~  314 (633)
                      +..+...+|++++|.|.........+.|++.  |.  .....     ......++...   ....|.|.++..+|+|.|.
T Consensus         8 P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~Yy   87 (107)
T d1tjgl1           8 PSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATYY   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceEE
Confidence            4456678899999999987666678899883  22  11111     11112233332   2236999999999999999


Q ss_pred             EEEEe
Q psy15127        315 CSALS  319 (633)
Q Consensus       315 C~a~n  319 (633)
                      |.+..
T Consensus        88 Ca~~~   92 (107)
T d1tjgl1          88 CQQLH   92 (107)
T ss_dssp             EEECS
T ss_pred             EEECc
Confidence            97654

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.38  E-value=0.00043  Score=53.45  Aligned_cols=72  Identities=21%  Similarity=0.266  Sum_probs=46.1

Q ss_pred             ceeEEecCCceEEEEEEEeee--cCCeeEEEEC--CEEEEeccCCccceEEEc---cC--ceEEEcCCCCCCCeEEEEEE
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGS--PLPSVFWTQE--GSQVLMFPGNAYGHLHVT---QE--GTLRIQGVQKEDAGFFVCSA  317 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~--p~~~v~W~~~--g~~~~~~~~~~~~~~~~~---~~--~~l~i~~~~~~d~G~Y~C~a  317 (633)
                      +..+...+|++++|.|...+.  ....+.|++.  |....... ....+....   ..  ..|+|.+++.+|+|.|.|.+
T Consensus         7 P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~-~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~   85 (113)
T d1vesa_           7 PRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSI-SIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQA   85 (113)
T ss_dssp             CSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEEC-CCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeee-eecccccceeECCCCceeeeecccccCCcceEeeee
Confidence            345667889999999998754  3356899972  22111101 111222221   11  26999999999999999998


Q ss_pred             Ee
Q psy15127        318 LS  319 (633)
Q Consensus       318 ~n  319 (633)
                      ..
T Consensus        86 ~~   87 (113)
T d1vesa_          86 FY   87 (113)
T ss_dssp             EE
T ss_pred             ec
Confidence            54

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.38  E-value=0.00015  Score=55.15  Aligned_cols=67  Identities=24%  Similarity=0.402  Sum_probs=47.2

Q ss_pred             CCCceEEEcCCeEEEEEEEeccCCC---eEEEEeC--CccC-------C----------CCCeEEccc-----ceEEEcc
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGDPLP---TILWRRD--DGKM-------P----------TGRAKILDD-----RSLQIEN  129 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~p~p---~i~W~~~--~~~i-------~----------~~~~~~~~~-----~~L~i~~  129 (633)
                      +.....+++|++++|.|.+.|....   .+.|+|.  |+.+       .          .+|+.+..|     -.|.|.+
T Consensus         6 esG~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~s   85 (119)
T d1ncwh1           6 QSGPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNS   85 (119)
T ss_dssp             EESCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccc
Confidence            3445568999999999999986543   3789873  4322       1          234444432     2599999


Q ss_pred             CCCCCCeEEEEEEE
Q psy15127        130 VGPQDEGLYICDVE  143 (633)
Q Consensus       130 v~~~d~G~Y~C~~~  143 (633)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (119)
T d1ncwh1          86 VTTEDTATYYCAGL   99 (119)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccCCceEEEEeEe
Confidence            99999999999754

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.38  E-value=0.00021  Score=54.31  Aligned_cols=68  Identities=22%  Similarity=0.462  Sum_probs=46.9

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC-------C-----------CCCeEEccc-----ceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM-------P-----------TGRAKILDD-----RSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i-------~-----------~~~~~~~~~-----~~L~i~  128 (633)
                      .+.....+++|++++|.|.+.|....  .+.|+|.  |+.+       .           .+++.+..|     ..|.|.
T Consensus         5 ~esG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~   84 (118)
T d1ct8b1           5 LESGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFS   84 (118)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEeccc
Confidence            44556678999999999999875432  5888873  3321       1           123333322     258999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy15127        129 NVGPQDEGLYICDVE  143 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~  143 (633)
                      +++.+|++.|.|...
T Consensus        85 ~L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          85 SLTTEDSAIYYCARY   99 (118)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEeee
Confidence            999999999999653

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.37  E-value=0.00015  Score=55.16  Aligned_cols=72  Identities=24%  Similarity=0.426  Sum_probs=46.5

Q ss_pred             eEEecCCceEEEEEEEeeecCCeeEEEEC--CE--EEEeccC-----CccceEEEc---cCceEEEcCCCCCCCeEEEEE
Q psy15127        249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQE--GS--QVLMFPG-----NAYGHLHVT---QEGTLRIQGVQKEDAGFFVCS  316 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~--g~--~~~~~~~-----~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~  316 (633)
                      .+.+.+|++++|.|.........+.|+|.  |.  .+.....     ....+....   ....|.|.++..+|+|.|.|.
T Consensus         7 sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA   86 (103)
T d8faba1           7 SVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQ   86 (103)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEee
Confidence            46678899999999886655567899973  21  1111100     011122211   223799999999999999998


Q ss_pred             EEeC
Q psy15127        317 ALSV  320 (633)
Q Consensus       317 a~n~  320 (633)
                      +...
T Consensus        87 ~~~~   90 (103)
T d8faba1          87 AWDN   90 (103)
T ss_dssp             EEET
T ss_pred             ecCC
Confidence            7653

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.37  E-value=0.00022  Score=54.94  Aligned_cols=68  Identities=26%  Similarity=0.529  Sum_probs=48.0

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC-------C-----------CCCeEEccc-----ceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM-------P-----------TGRAKILDD-----RSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i-------~-----------~~~~~~~~~-----~~L~i~  128 (633)
                      .+.....+++|++++|.|.+.|....  .+.|+|.  |+.+       .           .+|+.+..+     -.|.|.
T Consensus         5 ~esG~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~   84 (128)
T d2nxyd1           5 VESGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELR   84 (128)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeee
Confidence            34455668999999999999986544  4788773  3222       1           234444432     258999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy15127        129 NVGPQDEGLYICDVE  143 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~  143 (633)
                      +++.+|++.|.|...
T Consensus        85 sL~~eDTA~YYCAr~   99 (128)
T d2nxyd1          85 NLRSDDTAVYFCAGV   99 (128)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             eccccCceEEEEeEE
Confidence            999999999999864

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.36  E-value=0.00018  Score=55.94  Aligned_cols=35  Identities=20%  Similarity=0.306  Sum_probs=25.8

Q ss_pred             cccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEE
Q psy15127        164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKK  198 (633)
Q Consensus       164 ~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~  198 (633)
                      +...|....+.+|++++|.|..........+.|+|
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyr   37 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYK   37 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEE
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEE
Confidence            34567777899999999999743444455788987

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.36  E-value=0.00097  Score=51.10  Aligned_cols=32  Identities=22%  Similarity=0.404  Sum_probs=23.5

Q ss_pred             CCceEEecCCcEEEEEeCCCCCCCCeEEEEEC
Q psy15127        168 PKDTRVASGETALLECGPPKGQPEPTLHWKKN  199 (633)
Q Consensus       168 ~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~  199 (633)
                      |..+.+.+|++++|.|..........+.|+|.
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq   36 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQ   36 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEE
Confidence            45678899999999998433344456889973

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.36  E-value=0.00029  Score=53.82  Aligned_cols=73  Identities=18%  Similarity=0.282  Sum_probs=48.1

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEEC--CE---EEEec----cCCccceEEEc---cCceEEEcCCCCCCCeEEE
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQE--GS---QVLMF----PGNAYGHLHVT---QEGTLRIQGVQKEDAGFFV  314 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~--g~---~~~~~----~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~  314 (633)
                      +..+.+.+|++++|.|.........+.|++.  +.   .+...    ......++...   ....|.|.++..+|+|.|.
T Consensus         8 P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (107)
T d1d5il1           8 PSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYY   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEE
Confidence            3456678999999999987666667899873  21   11110    01111233322   2347999999999999999


Q ss_pred             EEEEe
Q psy15127        315 CSALS  319 (633)
Q Consensus       315 C~a~n  319 (633)
                      |.+..
T Consensus        88 Ca~~~   92 (107)
T d1d5il1          88 CLQYD   92 (107)
T ss_dssp             EEECS
T ss_pred             eeecc
Confidence            98654

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.36  E-value=0.00018  Score=55.81  Aligned_cols=32  Identities=19%  Similarity=0.451  Sum_probs=24.4

Q ss_pred             ccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEE
Q psy15127        165 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKK  198 (633)
Q Consensus       165 ~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~  198 (633)
                      .+.|....+.+|++++|.|.. .+. ...+.|++
T Consensus         4 ~Q~P~~~~~~~G~svtl~C~~-s~~-~~~~~WYr   35 (115)
T d1ogad1           4 EQSPQFLSIQEGENLTVYCNS-SSV-FSSLQWYR   35 (115)
T ss_dssp             EEECSEEEEETTCCEEEEEEC-SSC-CSCEEEEE
T ss_pred             EeCCCeEEECCCCCEEEEEEE-CCC-CceEEEEe
Confidence            455777889999999999994 432 34789997

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.36  E-value=0.00024  Score=54.22  Aligned_cols=68  Identities=22%  Similarity=0.512  Sum_probs=47.8

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC-------C-----------CCCeEEccc-----ceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM-------P-----------TGRAKILDD-----RSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i-------~-----------~~~~~~~~~-----~~L~i~  128 (633)
                      .+.....+++|+++.|.|.+.|....  .+.|+|.  |+.+       .           .+|+.+..+     -.|.|.
T Consensus         5 ~esG~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~   84 (124)
T d1yedb1           5 QQSGPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLS   84 (124)
T ss_dssp             EECCCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEE
T ss_pred             EeeCCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEeccc
Confidence            44555668999999999999886443  5899883  3322       1           234444332     248999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy15127        129 NVGPQDEGLYICDVE  143 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~  143 (633)
                      +++.+|++.|.|...
T Consensus        85 sL~~eDTAvYYCAR~   99 (124)
T d1yedb1          85 SLKSEDSAVYFCTRW   99 (124)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ccCCCcceEEEeccc
Confidence            999999999999753

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.36  E-value=0.00023  Score=54.77  Aligned_cols=68  Identities=26%  Similarity=0.599  Sum_probs=47.4

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC-------C-----------CCCeEEccc-----ceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM-------P-----------TGRAKILDD-----RSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i-------~-----------~~~~~~~~~-----~~L~i~  128 (633)
                      .++....+++|++++|.|.+.|....  .+.|+|.  |+.+       .           .+|+.+..|     -.|.|.
T Consensus         5 ~esg~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~   84 (127)
T d2fx7h1           5 VQSGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELN   84 (127)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeec
Confidence            34445568899999999999875433  4889873  3221       0           234444432     259999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy15127        129 NVGPQDEGLYICDVE  143 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~  143 (633)
                      +++.+|++.|.|...
T Consensus        85 sL~~eDTavYYCAR~   99 (127)
T d2fx7h1          85 SLRPEDTAVYYCARE   99 (127)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCcccceEEEEeec
Confidence            999999999999854

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.35  E-value=0.00023  Score=54.69  Aligned_cols=65  Identities=23%  Similarity=0.511  Sum_probs=46.2

Q ss_pred             CceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC-------C-----------CCCeEEccc-----ceEEEccCC
Q psy15127         79 SDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM-------P-----------TGRAKILDD-----RSLQIENVG  131 (633)
Q Consensus        79 ~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i-------~-----------~~~~~~~~~-----~~L~i~~v~  131 (633)
                      ....+++|++++|.|.++|....  .+.|+|.  |+.+       .           .+|+++..|     -.|.|.+++
T Consensus         7 G~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~   86 (124)
T d1zvya1           7 GGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVK   86 (124)
T ss_dssp             CCEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceecccc
Confidence            34457899999999999876543  5899884  3322       1           234444332     259999999


Q ss_pred             CCCCeEEEEEEE
Q psy15127        132 PQDEGLYICDVE  143 (633)
Q Consensus       132 ~~d~G~Y~C~~~  143 (633)
                      .+|++.|.|...
T Consensus        87 ~eDtAvYYCAr~   98 (124)
T d1zvya1          87 SEDTAIYTCGAT   98 (124)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             CCcceEEEEeec
Confidence            999999999764

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.34  E-value=0.00031  Score=54.30  Aligned_cols=69  Identities=22%  Similarity=0.543  Sum_probs=48.4

Q ss_pred             eeCCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC-------C-----------CCCeEEccc-----ceEEE
Q psy15127         75 ISEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM-------P-----------TGRAKILDD-----RSLQI  127 (633)
Q Consensus        75 ~~~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i-------~-----------~~~~~~~~~-----~~L~i  127 (633)
                      +.++....+++|++++|.|.+.|....  .+.|+|.  |+.+       .           .+|+.+..|     -.|.|
T Consensus         3 L~esg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~   82 (130)
T d1rhhb1           3 LEQSGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMEL   82 (130)
T ss_dssp             EEECCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EeccCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEe
Confidence            345556678999999999999875433  5899884  3321       0           234444332     24899


Q ss_pred             ccCCCCCCeEEEEEEE
Q psy15127        128 ENVGPQDEGLYICDVE  143 (633)
Q Consensus       128 ~~v~~~d~G~Y~C~~~  143 (633)
                      .+++.+|++.|.|...
T Consensus        83 ~~L~~eDtAvYyCAr~   98 (130)
T d1rhhb1          83 TNLRSDDTAVYYCARD   98 (130)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             eccCCCCcEEEEEEee
Confidence            9999999999999764

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00018  Score=54.41  Aligned_cols=79  Identities=20%  Similarity=0.274  Sum_probs=49.4

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEecc-CC-CeEEEEeCCccCCCCCe----EEccc------ceEEEccCCCCCCeE
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGD-PL-PTILWRRDDGKMPTGRA----KILDD------RSLQIENVGPQDEGL  137 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~-p~-p~i~W~~~~~~i~~~~~----~~~~~------~~L~i~~v~~~d~G~  137 (633)
                      .+|.+..-++......+..++|.|.+.+. |. ..|+|+++|..+..+..    ....+      +.|.|..-.......
T Consensus         4 ~~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~   83 (102)
T d1q0xl2           4 SSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSS   83 (102)
T ss_dssp             BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCE
T ss_pred             CCCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCE
Confidence            34655444333322245688999999875 32 37999999987653311    11112      357776665566789


Q ss_pred             EEEEEEeCCce
Q psy15127        138 YICDVENLVGS  148 (633)
Q Consensus       138 Y~C~~~n~~g~  148 (633)
                      |+|.|......
T Consensus        84 ytC~V~H~~~~   94 (102)
T d1q0xl2          84 YSCQVTHEGHS   94 (102)
T ss_dssp             EEEEEEETTEE
T ss_pred             EEEEEEECCcc
Confidence            99999876443

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00074  Score=50.06  Aligned_cols=66  Identities=15%  Similarity=0.264  Sum_probs=42.5

Q ss_pred             cCCceEEEEEEEee-ecCCeeEEEECCEEEEeccCCccceEEEccCc------eEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127        253 NHPRVNRLSCFAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG------TLRIQGVQKEDAGFFVCSALSVAGST  324 (633)
Q Consensus       253 ~~g~~~~l~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~G~Y~C~a~n~~g~~  324 (633)
                      ..++.++|.|.+.| +|.+.|.|.++|..+...   .........++      .|.+.   ..+...|+|.+....-..
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~---~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~   86 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAI---NTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRV   86 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCS---EEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCE
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEeccc---ceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCC
Confidence            45678999999987 588899999999876411   11111111222      35554   345689999998765433

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.32  E-value=0.00041  Score=53.85  Aligned_cols=74  Identities=19%  Similarity=0.288  Sum_probs=48.2

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEEC--CE--E-EEeccCCc-----cceEEE--cc---CceEEEcCCCCCCCe
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQE--GS--Q-VLMFPGNA-----YGHLHV--TQ---EGTLRIQGVQKEDAG  311 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~--g~--~-~~~~~~~~-----~~~~~~--~~---~~~l~i~~~~~~d~G  311 (633)
                      +..+.+.+|+.++|.|.........+.|++.  |+  . +.......     ..+...  ..   ...|.|.++..+|+|
T Consensus         7 p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   86 (115)
T d1j8hd1           7 GSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAA   86 (115)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCE
T ss_pred             CCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCc
Confidence            3456788999999999987666678999982  22  1 11111100     011111  11   125999999999999


Q ss_pred             EEEEEEEeC
Q psy15127        312 FFVCSALSV  320 (633)
Q Consensus       312 ~Y~C~a~n~  320 (633)
                      .|.|.+...
T Consensus        87 ~YyCa~~~~   95 (115)
T d1j8hd1          87 EYFCAVSES   95 (115)
T ss_dssp             EEEEEEESS
T ss_pred             cceeeecCC
Confidence            999998764

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.32  E-value=0.00016  Score=55.32  Aligned_cols=67  Identities=24%  Similarity=0.506  Sum_probs=46.4

Q ss_pred             CCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--Ccc------CC------------CCCeEEccc-----ceEEEccC
Q psy15127         78 PSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGK------MP------------TGRAKILDD-----RSLQIENV  130 (633)
Q Consensus        78 ~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~------i~------------~~~~~~~~~-----~~L~i~~v  130 (633)
                      .....+++|++++|.|.+.|....  .+.|+|.  |+.      |.            .+|+.+..+     ..|.|.++
T Consensus         7 sG~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L   86 (123)
T d1mqkh_           7 SGGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSL   86 (123)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeee
Confidence            344568899999999999876433  4789873  221      11            234444332     24999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy15127        131 GPQDEGLYICDVEN  144 (633)
Q Consensus       131 ~~~d~G~Y~C~~~n  144 (633)
                      +.+|++.|.|....
T Consensus        87 ~~eDtAvYYCAr~~  100 (123)
T d1mqkh_          87 KSEDTAMYYCVRHE  100 (123)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccCcccceeEEecC
Confidence            99999999997654

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00047  Score=53.07  Aligned_cols=71  Identities=21%  Similarity=0.359  Sum_probs=42.7

Q ss_pred             EEecCCceEEEEEEEeeecC---Ce--eEEEECCEE-EEec-cC---------CccceEEE-ccCceEEEcCCCCCCCeE
Q psy15127        250 LIWNHPRVNRLSCFAEGSPL---PS--VFWTQEGSQ-VLMF-PG---------NAYGHLHV-TQEGTLRIQGVQKEDAGF  312 (633)
Q Consensus       250 ~~~~~g~~~~l~C~~~g~p~---~~--v~W~~~g~~-~~~~-~~---------~~~~~~~~-~~~~~l~i~~~~~~d~G~  312 (633)
                      +....|++++|.|.....+.   ..  +.|.++... +... .+         .-..+... ..+.+|.|.+++.+|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            34557899999999864333   22  344454332 1111 00         11112222 345589999999999999


Q ss_pred             EEEEEEeC
Q psy15127        313 FVCSALSV  320 (633)
Q Consensus       313 Y~C~a~n~  320 (633)
                      |.|.+...
T Consensus        84 Y~C~V~~~   91 (110)
T d1ncna_          84 YQCIIHHK   91 (110)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            99998643

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.32  E-value=0.00046  Score=53.03  Aligned_cols=72  Identities=19%  Similarity=0.242  Sum_probs=46.0

Q ss_pred             eeEEecCCceEEEEEEEeee--cCCeeEEEEC--CEEEEeccCCccceEEEc---c--CceEEEcCCCCCCCeEEEEEEE
Q psy15127        248 SLLIWNHPRVNRLSCFAEGS--PLPSVFWTQE--GSQVLMFPGNAYGHLHVT---Q--EGTLRIQGVQKEDAGFFVCSAL  318 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~--p~~~v~W~~~--g~~~~~~~~~~~~~~~~~---~--~~~l~i~~~~~~d~G~Y~C~a~  318 (633)
                      ..+...+|+.++|.|...+.  ....+.|++.  |+...... ....+....   .  ...|.|.++..+|+|.|.|.+.
T Consensus         7 ~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~-~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~   85 (112)
T d1sq2n_           7 RSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESI-SKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLG   85 (112)
T ss_dssp             SEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEEC-CCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             CEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeee-ccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEe
Confidence            44667789999999988653  3467999972  22111000 111222221   1  1279999999999999999875


Q ss_pred             eC
Q psy15127        319 SV  320 (633)
Q Consensus       319 n~  320 (633)
                      ..
T Consensus        86 ~~   87 (112)
T d1sq2n_          86 VA   87 (112)
T ss_dssp             BT
T ss_pred             cC
Confidence            44

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.31  E-value=0.00023  Score=54.03  Aligned_cols=68  Identities=25%  Similarity=0.541  Sum_probs=47.3

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC-------C-----------CCCeEEccc-----ceEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM-------P-----------TGRAKILDD-----RSLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i-------~-----------~~~~~~~~~-----~~L~i~  128 (633)
                      .+.....+++|++++|.|.+.|....  .+.|.|.  |+.+       .           .+|+.+..+     -.|.|.
T Consensus         5 ~esg~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~   84 (120)
T d1ad9b1           5 VQSGAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELS   84 (120)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEecccc
Confidence            34455668999999999999875433  5889874  3222       1           234433322     258999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy15127        129 NVGPQDEGLYICDVE  143 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~  143 (633)
                      +++.+|++.|.|...
T Consensus        85 ~L~~eDTAvYYCAr~   99 (120)
T d1ad9b1          85 SLRSEDTAFYFCARE   99 (120)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEEEc
Confidence            999999999999753

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.31  E-value=0.00044  Score=53.01  Aligned_cols=73  Identities=19%  Similarity=0.336  Sum_probs=48.1

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEEC--CE--EEEec-----cCCccceEEEc---cCceEEEcCCCCCCCeEEE
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQE--GS--QVLMF-----PGNAYGHLHVT---QEGTLRIQGVQKEDAGFFV  314 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~--g~--~~~~~-----~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~  314 (633)
                      +..+...+|++++|.|...+.....+.|++.  |+  .+...     ......++...   ....|.|.++..+|+|.|.
T Consensus        10 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~Yy   89 (109)
T d1bwwa_          10 PSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYY   89 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceEE
Confidence            3456788999999999987765667899973  11  11110     01112233322   2236999999999999999


Q ss_pred             EEEEe
Q psy15127        315 CSALS  319 (633)
Q Consensus       315 C~a~n  319 (633)
                      |.+..
T Consensus        90 CA~~~   94 (109)
T d1bwwa_          90 CQQYQ   94 (109)
T ss_dssp             EEECS
T ss_pred             EeecC
Confidence            98754

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.31  E-value=0.00016  Score=55.32  Aligned_cols=67  Identities=24%  Similarity=0.425  Sum_probs=46.3

Q ss_pred             CCCceEEEcCCeEEEEEEEeccCC--C--eEEEEeC--CccC------C-----------CCCeEEccc-----ceEEEc
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGDPL--P--TILWRRD--DGKM------P-----------TGRAKILDD-----RSLQIE  128 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~p~--p--~i~W~~~--~~~i------~-----------~~~~~~~~~-----~~L~i~  128 (633)
                      +.....+++|++++|.|.+.|...  .  .+.|+|.  |+.+      .           .+|+.+..|     -.|.|.
T Consensus         6 esG~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~   85 (120)
T d1ai1h1           6 ESGPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLI   85 (120)
T ss_dssp             EECCSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEES
T ss_pred             eECCceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeeccee
Confidence            334556899999999999987532  2  4789884  3322      1           134444332     249999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy15127        129 NVGPQDEGLYICDVE  143 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~  143 (633)
                      +++.+|++.|.|...
T Consensus        86 sL~~eDtAvYYCAr~  100 (120)
T d1ai1h1          86 SVTNEDTAMYYCSRE  100 (120)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             eeeccceeEEEEEec
Confidence            999999999999754

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.31  E-value=0.00057  Score=52.48  Aligned_cols=72  Identities=11%  Similarity=0.237  Sum_probs=45.6

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEEC--CE-E-EEe-c-cC---------CccceEE-EccCceEEEcCCCCCCC
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQE--GS-Q-VLM-F-PG---------NAYGHLH-VTQEGTLRIQGVQKEDA  310 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~--g~-~-~~~-~-~~---------~~~~~~~-~~~~~~l~i~~~~~~d~  310 (633)
                      +..++..+|++++|.|...+ ....+.|+|.  |+ + +.. . ..         ..+.... ......|.|.++..+|+
T Consensus         8 P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   86 (110)
T d2aq2a1           8 PRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQT   86 (110)
T ss_dssp             CSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhhC
Confidence            34567789999999998754 3467999982  22 1 111 0 00         0111111 11234699999999999


Q ss_pred             eEEEEEEEe
Q psy15127        311 GFFVCSALS  319 (633)
Q Consensus       311 G~Y~C~a~n  319 (633)
                      |.|.|.+..
T Consensus        87 a~YyCa~~~   95 (110)
T d2aq2a1          87 SVYFCASGG   95 (110)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEeeCC
Confidence            999998764

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.31  E-value=0.00017  Score=55.76  Aligned_cols=34  Identities=29%  Similarity=0.542  Sum_probs=25.1

Q ss_pred             ccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEEC
Q psy15127        165 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKN  199 (633)
Q Consensus       165 ~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~  199 (633)
                      .+.|....+.+|+.++|.|.. .......+.|++.
T Consensus         3 ~Q~P~~~~~~~G~~vtl~C~~-~~~~~~~~~WYrq   36 (110)
T d1u3ha1           3 RQSPQSLTVWEGETAILNCSY-ENSAFDYFPWYQQ   36 (110)
T ss_dssp             ECSCSSEEEETTSCEEEEEEE-CCTTEEEEEEEEE
T ss_pred             EecCCEEEEcCCCCEEEEEEe-cCCCCcEEEEEee
Confidence            456777888999999999984 3333457889874

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00069  Score=46.25  Aligned_cols=59  Identities=12%  Similarity=0.210  Sum_probs=41.2

Q ss_pred             EEcCCeEEEEEEEeccCCC--eEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEe
Q psy15127         83 VLSGSVVEFVCRVGGDPLP--TILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVEN  144 (633)
Q Consensus        83 ~~~G~~~~L~C~~~~~p~p--~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n  144 (633)
                      ...|..+.|.|.......+  .-.|.|+|+.|.+++... ..-.+.|..  .+++|.|.|+...
T Consensus         9 ~~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~-~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2           9 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-QKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC-SEEEEEECG--GGCCEEEEEEEES
T ss_pred             ccCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCC-CceEEEEec--CCCCceEEEEEcC
Confidence            4568899999999755433  469999999987653221 112455654  7789999999753

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00057  Score=52.36  Aligned_cols=74  Identities=12%  Similarity=0.141  Sum_probs=45.8

Q ss_pred             eeEEecCCceEEEEEEEeeecC--CeeEEEEC--CEEEE----eccC---CccceEEEcc-----CceEEEcCCCCCCCe
Q psy15127        248 SLLIWNHPRVNRLSCFAEGSPL--PSVFWTQE--GSQVL----MFPG---NAYGHLHVTQ-----EGTLRIQGVQKEDAG  311 (633)
Q Consensus       248 ~~~~~~~g~~~~l~C~~~g~p~--~~v~W~~~--g~~~~----~~~~---~~~~~~~~~~-----~~~l~i~~~~~~d~G  311 (633)
                      ..+...+|++++|.|.......  ..+.|+|.  +....    ....   ....+.....     ...|.|.+++.+|+|
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG   83 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSG   83 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCE
Confidence            4466778999999998654322  46789873  22111    1111   1112332221     126999999999999


Q ss_pred             EEEEEEEeCC
Q psy15127        312 FFVCSALSVA  321 (633)
Q Consensus       312 ~Y~C~a~n~~  321 (633)
                      .|.|.+....
T Consensus        84 ~Y~C~v~~~~   93 (108)
T d1hkfa_          84 HYWCRIYRPS   93 (108)
T ss_dssp             EEEEEEECTT
T ss_pred             EEEEEEecCC
Confidence            9999987544

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00059  Score=50.11  Aligned_cols=67  Identities=22%  Similarity=0.339  Sum_probs=50.1

Q ss_pred             CCceEEEcCCeEEEEEEEeccCCCeE-EEEeCCccC-CCCC-eEEcccceEEEccCCCCCCeEEEEEEEeC
Q psy15127         78 PSDATVLSGSVVEFVCRVGGDPLPTI-LWRRDDGKM-PTGR-AKILDDRSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        78 ~~~~~~~~G~~~~L~C~~~~~p~p~i-~W~~~~~~i-~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      |..+.+.+|+.+.|.|.++ .|...+ .|.+++..+ +.+. ........++|.+++..|+|.|.|.|...
T Consensus        12 p~~V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~~~   81 (95)
T d1fltx_          12 PEIIHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNATYKEIGLLTCEATVN   81 (95)
T ss_dssp             CEEEEECTTSCEEECCCBS-CTTSCCEEEETTTEEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEEeCCCCEEEEccCC-CCCceeEEEeccCCccCCCCCEEEECCCCCEEEeCCCcccCeEEEEEEEEC
Confidence            4457789999999999997 455554 455566654 4443 33445678999999999999999999765

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.29  E-value=0.00012  Score=54.53  Aligned_cols=60  Identities=25%  Similarity=0.520  Sum_probs=41.4

Q ss_pred             EEcCCeEEEEEEEeccC--CCeEEEEeC--CccC------C-----------CCCeEEccc-----ceEEEccCCCCCCe
Q psy15127         83 VLSGSVVEFVCRVGGDP--LPTILWRRD--DGKM------P-----------TGRAKILDD-----RSLQIENVGPQDEG  136 (633)
Q Consensus        83 ~~~G~~~~L~C~~~~~p--~p~i~W~~~--~~~i------~-----------~~~~~~~~~-----~~L~i~~v~~~d~G  136 (633)
                      +++|++++|.|.+.|..  .-.+.|+|+  |+.+      .           .+|+.+..+     -.|.|.+++.+|++
T Consensus         5 vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDtA   84 (107)
T d1sjva_           5 VQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDTA   84 (107)
T ss_dssp             CCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGCS
T ss_pred             ecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccce
Confidence            67899999999998753  235889885  2222      1           234444332     25999999999999


Q ss_pred             EEEEEE
Q psy15127        137 LYICDV  142 (633)
Q Consensus       137 ~Y~C~~  142 (633)
                      .|.|..
T Consensus        85 vYyCA~   90 (107)
T d1sjva_          85 VYYCYT   90 (107)
T ss_dssp             EEEEEE
T ss_pred             eeeEec
Confidence            999964

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.29  E-value=0.00034  Score=52.30  Aligned_cols=76  Identities=24%  Similarity=0.321  Sum_probs=44.7

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEecc-CC-CeEEEEeCCccCCCCCe----EEcccc---eEEEccCCCCCCeEEEE
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGD-PL-PTILWRRDDGKMPTGRA----KILDDR---SLQIENVGPQDEGLYIC  140 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~-p~-p~i~W~~~~~~i~~~~~----~~~~~~---~L~i~~v~~~d~G~Y~C  140 (633)
                      .+|.+..-+... ...++..+|.|.+.+. |. ..|+|++||..+..+..    ....++   .+....+...+.+.|+|
T Consensus         3 V~P~V~l~~~~~-~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC   81 (98)
T d1d5mb1           3 VYPEVTVYPAKT-QPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTC   81 (98)
T ss_dssp             BCCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEE
T ss_pred             CCCEEEEECCCc-cccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEE
Confidence            456665543332 3446777899999885 33 37999999988754321    112232   23334566788899999


Q ss_pred             EEEeCC
Q psy15127        141 DVENLV  146 (633)
Q Consensus       141 ~~~n~~  146 (633)
                      .|....
T Consensus        82 ~V~H~s   87 (98)
T d1d5mb1          82 QVEHPS   87 (98)
T ss_dssp             EEECTT
T ss_pred             EEEECC
Confidence            998653

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.28  E-value=0.00045  Score=52.40  Aligned_cols=72  Identities=14%  Similarity=0.317  Sum_probs=44.4

Q ss_pred             ceeEEecCCceEEEEEEEeeecCCeeEEEECC--E--EEEec-----cCCccceEEE---ccCceEEEcCCCCCCCeEEE
Q psy15127        247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEG--S--QVLMF-----PGNAYGHLHV---TQEGTLRIQGVQKEDAGFFV  314 (633)
Q Consensus       247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g--~--~~~~~-----~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~  314 (633)
                      +..+...+|++++|.|.... ....+.|++..  .  .+...     ......++..   .....|.|.++..+|+|.|.
T Consensus         7 P~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy   85 (104)
T d1yqvl1           7 PAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATYY   85 (104)
T ss_dssp             SSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeEE
Confidence            44567889999999998643 33468899732  1  11100     0001112222   12237999999999999999


Q ss_pred             EEEEe
Q psy15127        315 CSALS  319 (633)
Q Consensus       315 C~a~n  319 (633)
                      |.+..
T Consensus        86 Ca~~~   90 (104)
T d1yqvl1          86 CQQWG   90 (104)
T ss_dssp             EEECS
T ss_pred             EEecC
Confidence            97643

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.27  E-value=0.0013  Score=50.64  Aligned_cols=32  Identities=22%  Similarity=0.513  Sum_probs=24.2

Q ss_pred             ccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEE
Q psy15127        165 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKK  198 (633)
Q Consensus       165 ~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~  198 (633)
                      .+.|....+.+|++++|.|....  ....+.|+|
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~--~~~~i~WYr   34 (112)
T d1kgce1           3 SQSPRYKVAKRGQDVALRCDPIS--GHVSLFWYQ   34 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT--TCCEEEEEE
T ss_pred             EECCCeEEECCCCCEEEEEEECC--CCCEEEeee
Confidence            34567778899999999998433  345789997

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.26  E-value=0.00035  Score=54.33  Aligned_cols=35  Identities=17%  Similarity=0.257  Sum_probs=26.3

Q ss_pred             cccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEE
Q psy15127        164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKK  198 (633)
Q Consensus       164 ~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~  198 (633)
                      +.+.|..+.+.+|++|+|.|..........+.|+|
T Consensus         2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYr   36 (115)
T d1fo0a_           2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYK   36 (115)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEE
T ss_pred             eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEE
Confidence            34567778899999999999744444455788987

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.26  E-value=0.00036  Score=53.44  Aligned_cols=65  Identities=23%  Similarity=0.474  Sum_probs=45.7

Q ss_pred             CceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC-------C-----------CCCeEEccc-----ceEEEccCC
Q psy15127         79 SDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM-------P-----------TGRAKILDD-----RSLQIENVG  131 (633)
Q Consensus        79 ~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i-------~-----------~~~~~~~~~-----~~L~i~~v~  131 (633)
                      ....+++|++++|.|.+.|....  .+.|+|.  |+.+       .           .+|+.+..|     -.|.|.+++
T Consensus         8 G~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~   87 (122)
T d1bz7b1           8 GGGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLR   87 (122)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeec
Confidence            34557899999999999876433  4899884  3211       1           234444332     258999999


Q ss_pred             CCCCeEEEEEEE
Q psy15127        132 PQDEGLYICDVE  143 (633)
Q Consensus       132 ~~d~G~Y~C~~~  143 (633)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (122)
T d1bz7b1          88 SEDTAIYYCTRG   99 (122)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             ccCceEEEeecC
Confidence            999999999754

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.26  E-value=0.00032  Score=53.66  Aligned_cols=65  Identities=25%  Similarity=0.490  Sum_probs=45.4

Q ss_pred             CceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC------C------------CCCeEEccc-----ceEEEccCC
Q psy15127         79 SDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM------P------------TGRAKILDD-----RSLQIENVG  131 (633)
Q Consensus        79 ~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i------~------------~~~~~~~~~-----~~L~i~~v~  131 (633)
                      ....+++|++++|.|.+.|....  .+.|+|.  |+.+      .            .+|+.+..|     -.|.|.+++
T Consensus         8 g~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~   87 (121)
T d1ol0a_           8 GGGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLR   87 (121)
T ss_dssp             ECEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecc
Confidence            34457899999999999875432  4889874  3321      1            234444332     259999999


Q ss_pred             CCCCeEEEEEEE
Q psy15127        132 PQDEGLYICDVE  143 (633)
Q Consensus       132 ~~d~G~Y~C~~~  143 (633)
                      .+|++.|.|...
T Consensus        88 ~eDtAvYYCAr~   99 (121)
T d1ol0a_          88 AEDTAVYYCARE   99 (121)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cccceEEEEEEe
Confidence            999999999754

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.26  E-value=0.00023  Score=54.99  Aligned_cols=68  Identities=22%  Similarity=0.539  Sum_probs=47.2

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC-------C-----------CCCeEEccc---c--eEEEc
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM-------P-----------TGRAKILDD---R--SLQIE  128 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i-------~-----------~~~~~~~~~---~--~L~i~  128 (633)
                      .++....+++|++++|.|.++|....  .+.|+|.  |+.+       .           .+|+.+..|   .  .|.|.
T Consensus         5 ~esg~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~   84 (130)
T d1rzga1           5 VQSGAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELS   84 (130)
T ss_dssp             EECCCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeee
Confidence            44555668999999999999876433  5899884  3322       1           133333322   2  48899


Q ss_pred             cCCCCCCeEEEEEEE
Q psy15127        129 NVGPQDEGLYICDVE  143 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~  143 (633)
                      +++.+|++.|.|...
T Consensus        85 sL~~eDtA~YYCAr~   99 (130)
T d1rzga1          85 SLRSEDTAVFYCASP   99 (130)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ecCCCccEEEEEEEe
Confidence            999999999999853

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.25  E-value=0.00021  Score=54.58  Aligned_cols=70  Identities=16%  Similarity=0.211  Sum_probs=45.5

Q ss_pred             eEEecCCceEEEEEEEeeecCCeeEEEEC--CEEEE-ec---------cCCccceEEEccCceEEEcCCCCCCCeEEEEE
Q psy15127        249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQE--GSQVL-MF---------PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS  316 (633)
Q Consensus       249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~--g~~~~-~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  316 (633)
                      .+.+.+|++++|.|.........+.|++.  |+.+. +.         ....+..........|.|.++..+|+|.|.|.
T Consensus        10 s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa   89 (107)
T d3cx5k1          10 SLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYFCQ   89 (107)
T ss_dssp             TCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEEEEE
T ss_pred             EEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcEEee
Confidence            34567899999999987766667999973  22111 00         00112121222234799999999999999997


Q ss_pred             EE
Q psy15127        317 AL  318 (633)
Q Consensus       317 a~  318 (633)
                      +.
T Consensus        90 ~~   91 (107)
T d3cx5k1          90 HH   91 (107)
T ss_dssp             EC
T ss_pred             eC
Confidence            64

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.25  E-value=0.00027  Score=53.99  Aligned_cols=66  Identities=24%  Similarity=0.474  Sum_probs=46.4

Q ss_pred             CCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC------C--------------CCCeEEccc-----ceEEEc
Q psy15127         78 PSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM------P--------------TGRAKILDD-----RSLQIE  128 (633)
Q Consensus        78 ~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i------~--------------~~~~~~~~~-----~~L~i~  128 (633)
                      .....+++|++++|.|.+.|....  .+.|+|.  |+.+      .              .+|+.+..|     -.|.|.
T Consensus         7 sg~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~   86 (122)
T d1q9rb1           7 SGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN   86 (122)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceecccee
Confidence            344568999999999999876433  5899874  3322      0              134444332     249999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy15127        129 NVGPQDEGLYICDVE  143 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~  143 (633)
                      +++.+|++.|.|...
T Consensus        87 sL~~eDTAvYYCar~  101 (122)
T d1q9rb1          87 TLRAEDSATYYCARD  101 (122)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             eeccCcceEEEEEec
Confidence            999999999999864

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.24  E-value=0.00046  Score=52.47  Aligned_cols=66  Identities=24%  Similarity=0.480  Sum_probs=45.8

Q ss_pred             CCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC-------C-------------CCCeEEccc-----ceEEEc
Q psy15127         78 PSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM-------P-------------TGRAKILDD-----RSLQIE  128 (633)
Q Consensus        78 ~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i-------~-------------~~~~~~~~~-----~~L~i~  128 (633)
                      .....+++|++++|.|.+.|....  .+.|+|.  |+.+       .             .+|+.+..+     -.|.|.
T Consensus         7 sG~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~   86 (120)
T d1dlfh_           7 SGGGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMN   86 (120)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             ECCceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceecccee
Confidence            344558899999999999876433  5889873  3211       0             134444332     259999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy15127        129 NVGPQDEGLYICDVE  143 (633)
Q Consensus       129 ~v~~~d~G~Y~C~~~  143 (633)
                      +++.+|++.|.|...
T Consensus        87 ~L~~eDtAvYYCA~~  101 (120)
T d1dlfh_          87 TLRAEDTGIYYCTGI  101 (120)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             eccCCCceEEEeeEe
Confidence            999999999999754

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.22  E-value=0.00033  Score=53.67  Aligned_cols=65  Identities=25%  Similarity=0.479  Sum_probs=45.8

Q ss_pred             CceEEEcCCeEEEEEEEeccCC--CeEEEEeC--CccC-------C-----------CCCeEEccc-----ceEEEccCC
Q psy15127         79 SDATVLSGSVVEFVCRVGGDPL--PTILWRRD--DGKM-------P-----------TGRAKILDD-----RSLQIENVG  131 (633)
Q Consensus        79 ~~~~~~~G~~~~L~C~~~~~p~--p~i~W~~~--~~~i-------~-----------~~~~~~~~~-----~~L~i~~v~  131 (633)
                      ..-.+++|++++|.|.+.|...  -.+.|+|.  |+.+       .           .+|+.+..|     -.|.|.+++
T Consensus         8 G~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~   87 (125)
T d1op3h1           8 GGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR   87 (125)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccC
Confidence            3456899999999999987543  35899884  3221       0           234444432     258999999


Q ss_pred             CCCCeEEEEEEE
Q psy15127        132 PQDEGLYICDVE  143 (633)
Q Consensus       132 ~~d~G~Y~C~~~  143 (633)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (125)
T d1op3h1          88 VEDTAIYYCARK   99 (125)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CccceeEeEeec
Confidence            999999999754

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.22  E-value=0.00043  Score=51.47  Aligned_cols=60  Identities=18%  Similarity=0.445  Sum_probs=38.5

Q ss_pred             cCCeEEEEEEEeccCCC--eEEEEeC--CccC------------------CCCCeEEccc-----ceEEEccCCCCCCeE
Q psy15127         85 SGSVVEFVCRVGGDPLP--TILWRRD--DGKM------------------PTGRAKILDD-----RSLQIENVGPQDEGL  137 (633)
Q Consensus        85 ~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i------------------~~~~~~~~~~-----~~L~i~~v~~~d~G~  137 (633)
                      +|++++|.|.++|....  .+.|+|.  |+.+                  -.+|+.+..+     ..|.|.+++.+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            58999999999876433  5899874  3322                  1234444433     259999999999999


Q ss_pred             EEEEEEe
Q psy15127        138 YICDVEN  144 (633)
Q Consensus       138 Y~C~~~n  144 (633)
                      |.|....
T Consensus        81 YYCAr~~   87 (103)
T d1oari_          81 YYCARMW   87 (103)
T ss_dssp             EEEEEEE
T ss_pred             EEeEEEC
Confidence            9997544

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.22  E-value=0.00019  Score=54.61  Aligned_cols=68  Identities=26%  Similarity=0.495  Sum_probs=46.4

Q ss_pred             eCCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC---------C-----------CCCeEEccc-----ceEE
Q psy15127         76 SEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM---------P-----------TGRAKILDD-----RSLQ  126 (633)
Q Consensus        76 ~~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i---------~-----------~~~~~~~~~-----~~L~  126 (633)
                      .+.....+++|++++|.|.+.|....  .+.|+|.  |+.+         .           .+|+.+..|     -.|.
T Consensus         5 ~eSG~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~   84 (121)
T d1nfdf1           5 VESGGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQ   84 (121)
T ss_dssp             EEECCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEE
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeece
Confidence            34455678999999999999876433  4789883  3221         1           122222222     2499


Q ss_pred             EccCCCCCCeEEEEEEE
Q psy15127        127 IENVGPQDEGLYICDVE  143 (633)
Q Consensus       127 i~~v~~~d~G~Y~C~~~  143 (633)
                      |.+++.+|++.|.|...
T Consensus        85 ~~~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          85 MNRLRVDDTAIYYCTRA  101 (121)
T ss_dssp             EESCCGGGCEECEEEEE
T ss_pred             ecccCCCcceEEEEecc
Confidence            99999999999999754

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.22  E-value=0.00025  Score=54.52  Aligned_cols=66  Identities=20%  Similarity=0.393  Sum_probs=44.7

Q ss_pred             CCceEEEcCCeEEEEEEEeccCC----CeEEEEeC--CccCC-----------------CCCeEEccc-----ceEEEcc
Q psy15127         78 PSDATVLSGSVVEFVCRVGGDPL----PTILWRRD--DGKMP-----------------TGRAKILDD-----RSLQIEN  129 (633)
Q Consensus        78 ~~~~~~~~G~~~~L~C~~~~~p~----p~i~W~~~--~~~i~-----------------~~~~~~~~~-----~~L~i~~  129 (633)
                      .....+++|++++|.|.+.|...    -.+.|+|.  |+.+.                 .+|+.+..+     -.|.|.+
T Consensus         7 sg~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~s   86 (123)
T d1r0ah1           7 SGPGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMT   86 (123)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECS
T ss_pred             ECCceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceee
Confidence            34456889999999999986432    24789873  33221                 123333222     2499999


Q ss_pred             CCCCCCeEEEEEEE
Q psy15127        130 VGPQDEGLYICDVE  143 (633)
Q Consensus       130 v~~~d~G~Y~C~~~  143 (633)
                      ++.+|++.|.|...
T Consensus        87 l~~eDsAvYyCAr~  100 (123)
T d1r0ah1          87 VETADTAIYYCAQS  100 (123)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccccceEEeeccc
Confidence            99999999999753

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.21  E-value=0.00056  Score=53.38  Aligned_cols=66  Identities=23%  Similarity=0.402  Sum_probs=46.0

Q ss_pred             CceEEEcCCeEEEEEEEeccCC----CeEEEEeC--CccC-----------------CCCCeEEccc-----ceEEEccC
Q psy15127         79 SDATVLSGSVVEFVCRVGGDPL----PTILWRRD--DGKM-----------------PTGRAKILDD-----RSLQIENV  130 (633)
Q Consensus        79 ~~~~~~~G~~~~L~C~~~~~p~----p~i~W~~~--~~~i-----------------~~~~~~~~~~-----~~L~i~~v  130 (633)
                      ....+++|++++|.|.+.|...    ..+.|+|.  |+.+                 -.+|+.+..+     -.|.|.++
T Consensus         8 g~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l   87 (132)
T d1tjgh1           8 GPPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRV   87 (132)
T ss_dssp             CCSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccC
Confidence            3456889999999999986532    25899984  3222                 0234444322     24999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy15127        131 GPQDEGLYICDVEN  144 (633)
Q Consensus       131 ~~~d~G~Y~C~~~n  144 (633)
                      +.+|++.|.|....
T Consensus        88 ~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          88 SPVDTATYFCAHRR  101 (132)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CcccceEEEEEEec
Confidence            99999999998643

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.20  E-value=0.00078  Score=51.00  Aligned_cols=67  Identities=24%  Similarity=0.482  Sum_probs=47.0

Q ss_pred             CceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC------C-----------CCCeEEccc-----ceEEEccCCC
Q psy15127         79 SDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM------P-----------TGRAKILDD-----RSLQIENVGP  132 (633)
Q Consensus        79 ~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i------~-----------~~~~~~~~~-----~~L~i~~v~~  132 (633)
                      ....+++|++++|.|.+.|....  .+.|+|.  |+.+      .           .+|+.+..+     -.|.|.+++.
T Consensus         8 g~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~   87 (118)
T d1lo4h1           8 GGDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRS   87 (118)
T ss_dssp             CCCEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCG
T ss_pred             CCceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccC
Confidence            34458899999999999886543  5899884  3221      1           234444332     2599999999


Q ss_pred             CCCeEEEEEEEeC
Q psy15127        133 QDEGLYICDVENL  145 (633)
Q Consensus       133 ~d~G~Y~C~~~n~  145 (633)
                      +|++.|.|.....
T Consensus        88 eDtA~YyCAr~~~  100 (118)
T d1lo4h1          88 EDTAIYYCARGTS  100 (118)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             CcceEEEecccCC
Confidence            9999999975433

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.20  E-value=0.00088  Score=46.15  Aligned_cols=70  Identities=19%  Similarity=0.373  Sum_probs=48.4

Q ss_pred             CceEEEcCCeEEEEEEEec-cCCCeEEEEeCCc----cCCCCCeEE---ccc-----ceEEEccCCCCCCeEEEEEEEeC
Q psy15127         79 SDATVLSGSVVEFVCRVGG-DPLPTILWRRDDG----KMPTGRAKI---LDD-----RSLQIENVGPQDEGLYICDVENL  145 (633)
Q Consensus        79 ~~~~~~~G~~~~L~C~~~~-~p~p~i~W~~~~~----~i~~~~~~~---~~~-----~~L~i~~v~~~d~G~Y~C~~~n~  145 (633)
                      ....+..|+.+.|.|.+.- .-.|.++|-|-++    ++.-+....   ..+     ..|.+..+..+|.|.|+|.|.-.
T Consensus        11 S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~   90 (104)
T d1xaua_          11 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFN   90 (104)
T ss_dssp             EEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             ceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCC
Confidence            3456888999999999963 2467899988443    233221111   111     36899999999999999999755


Q ss_pred             Cce
Q psy15127        146 VGS  148 (633)
Q Consensus       146 ~g~  148 (633)
                      .+-
T Consensus        91 s~v   93 (104)
T d1xaua_          91 SQV   93 (104)
T ss_dssp             TEE
T ss_pred             hhh
Confidence            444

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.19  E-value=0.00053  Score=52.61  Aligned_cols=65  Identities=25%  Similarity=0.440  Sum_probs=45.5

Q ss_pred             CceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC-------C-----------CCCeEEccc-----ceEEEccCC
Q psy15127         79 SDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM-------P-----------TGRAKILDD-----RSLQIENVG  131 (633)
Q Consensus        79 ~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i-------~-----------~~~~~~~~~-----~~L~i~~v~  131 (633)
                      ....+++|++++|.|.+.|....  .+.|+|.  |+.+       .           .+|+.+..|     -.|.|.+++
T Consensus         8 g~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~   87 (126)
T d1dfbh1           8 GGGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLR   87 (126)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeec
Confidence            34568899999999999876433  5889884  3211       1           234444332     259999999


Q ss_pred             CCCCeEEEEEEE
Q psy15127        132 PQDEGLYICDVE  143 (633)
Q Consensus       132 ~~d~G~Y~C~~~  143 (633)
                      .+|++.|.|...
T Consensus        88 ~eDtavYYCAr~   99 (126)
T d1dfbh1          88 AEDMALYYCVKG   99 (126)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCcceEEEEEec
Confidence            999999999754

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.19  E-value=0.0005  Score=51.39  Aligned_cols=72  Identities=22%  Similarity=0.338  Sum_probs=45.4

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEecc-C-CCeEEEEeCCccCCCCC----eEEcccc------eEEEccCCCCCCeE
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGD-P-LPTILWRRDDGKMPTGR----AKILDDR------SLQIENVGPQDEGL  137 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~-p-~p~i~W~~~~~~i~~~~----~~~~~~~------~L~i~~v~~~d~G~  137 (633)
                      .+|.+..-+... +..|+..+|.|.+.|. | ...|+|++||..+..+.    .....++      .|.+   ..++...
T Consensus         4 ~~P~V~v~~~~~-~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v---~~~~~~~   79 (99)
T d1uvqa1           4 EVPEVTVFSKSP-VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTF---LPSADEI   79 (99)
T ss_dssp             CCCEEEEEESSC-CCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEE---CCCTTCC
T ss_pred             cCCEEEEEcCCc-ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEE---cCCCCCE
Confidence            356554433222 4567889999999886 3 34799999999875431    1112222      3444   4456678


Q ss_pred             EEEEEEeC
Q psy15127        138 YICDVENL  145 (633)
Q Consensus       138 Y~C~~~n~  145 (633)
                      |+|.|...
T Consensus        80 ytC~V~H~   87 (99)
T d1uvqa1          80 YDCKVEHW   87 (99)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEeC
Confidence            99999865

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.19  E-value=0.00047  Score=53.44  Aligned_cols=65  Identities=20%  Similarity=0.362  Sum_probs=44.8

Q ss_pred             CceEEEcCCeEEEEEEEeccCC----CeEEEEeC--CccC-------C----------CCCeEEccc-----ceEEEccC
Q psy15127         79 SDATVLSGSVVEFVCRVGGDPL----PTILWRRD--DGKM-------P----------TGRAKILDD-----RSLQIENV  130 (633)
Q Consensus        79 ~~~~~~~G~~~~L~C~~~~~p~----p~i~W~~~--~~~i-------~----------~~~~~~~~~-----~~L~i~~v  130 (633)
                      ....+++|++++|.|.+.|...    ..+.|+|.  |+.+       .          .+|+.+..+     -.|.|.++
T Consensus         8 G~~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l   87 (126)
T d1etzb1           8 GPGILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSV   87 (126)
T ss_dssp             CCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecc
Confidence            3446889999999999886432    24689873  3322       1          234443332     25999999


Q ss_pred             CCCCCeEEEEEEE
Q psy15127        131 GPQDEGLYICDVE  143 (633)
Q Consensus       131 ~~~d~G~Y~C~~~  143 (633)
                      +.+|++.|.|...
T Consensus        88 ~~eDtAvYyCAr~  100 (126)
T d1etzb1          88 DTSDTATYHCARR  100 (126)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             cccccceEEEEEe
Confidence            9999999999753

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00013  Score=55.29  Aligned_cols=79  Identities=18%  Similarity=0.284  Sum_probs=48.7

Q ss_pred             cCCeeeeCCCceEEEcCCeEEEEEEEecc-CC-CeEEEEeCCccCCCCCe----EEccc------ceEEEccCCCCCCeE
Q psy15127         70 IKPFPISEPSDATVLSGSVVEFVCRVGGD-PL-PTILWRRDDGKMPTGRA----KILDD------RSLQIENVGPQDEGL  137 (633)
Q Consensus        70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~-p~-p~i~W~~~~~~i~~~~~----~~~~~------~~L~i~~v~~~d~G~  137 (633)
                      .+|.+..-++......+..++|.|.+.+. |. ..|+|++||..+..+..    ....+      +.|.|..........
T Consensus         4 ~~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~   83 (102)
T d1rzfl2           4 AAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRS   83 (102)
T ss_dssp             BCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSC
T ss_pred             CCCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCE
Confidence            35555443333323346779999999885 32 36999999998765321    11122      356665544444668


Q ss_pred             EEEEEEeCCce
Q psy15127        138 YICDVENLVGS  148 (633)
Q Consensus       138 Y~C~~~n~~g~  148 (633)
                      |+|.|......
T Consensus        84 ytC~V~H~~~~   94 (102)
T d1rzfl2          84 YSCQVTHEGST   94 (102)
T ss_dssp             EEEEEEETTEE
T ss_pred             EEEEEEECCcc
Confidence            99999886543

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.17  E-value=0.00045  Score=53.25  Aligned_cols=67  Identities=24%  Similarity=0.558  Sum_probs=46.2

Q ss_pred             CCCceEEEcCCeEEEEEEEeccCCC--eEEEEeC--CccC-------C-----------CCCeEEccc-----ceEEEcc
Q psy15127         77 EPSDATVLSGSVVEFVCRVGGDPLP--TILWRRD--DGKM-------P-----------TGRAKILDD-----RSLQIEN  129 (633)
Q Consensus        77 ~~~~~~~~~G~~~~L~C~~~~~p~p--~i~W~~~--~~~i-------~-----------~~~~~~~~~-----~~L~i~~  129 (633)
                      +.....+++|++++|.|.+.|....  .+.|+|.  |+.+       .           .+|+.+..|     -.|.|.+
T Consensus         6 esG~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~   85 (127)
T d2fb4h1           6 QSGGGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDS   85 (127)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeee
Confidence            3344568899999999999875432  5888884  2221       1           234444332     2599999


Q ss_pred             CCCCCCeEEEEEEE
Q psy15127        130 VGPQDEGLYICDVE  143 (633)
Q Consensus       130 v~~~d~G~Y~C~~~  143 (633)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTA~YYCAr~   99 (127)
T d2fb4h1          86 LRPEDTGVYFCARD   99 (127)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             eeecceeEEEEEEe
Confidence            99999999999754