Psyllid ID: psy15128

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--
Protein Sequence
MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHGT
Secondary Structure (PSIPRED)
ccccccccccEEEEEEEEEccccEEEEEEEEEEEcccEEEEcccEEEEEccccEEEEEEEEEEcccEEEEEEccEEEEcccccccccEEEcccccEEEccccccccEEEEEEEEccccEEEEEEEEEEEEEccccccEEEEccccEEEcccccEEEEEEEEcccccEEEEEEccEEcccccccEEEcccEEEEEEEEcccEEEcccEEEEcccccEEEEEcccccccccEEEEEEccEEEcccccccEEEcccccEEEccccEEEEEcccccccEEEEEEEEccccEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEEEcccEEEEcEEEEEEEcccEEEEccccEEEEcccEEEEEEEcccccccEEEEEEccEEccccccccccEEEEccccEEEEEEEEcccccEEEEEEEcccccEEEEEEEEEEEcccccccEEEEccccEEEEcccEEEEEEEEccccccEEEEEEcccEccccccEEEEccccEEEEEEcccEEEEccccEEEEcccEEEEEEEccccccccEEEEEEcccEcccccccEEEEccccEEEEccccEEEEEEcccccccEEEEEEEEccccccccc
Coil and Loop (DISEMBL)
mitevkksdegkyQCYVQNmvgeretkpalltvhappsfvvrpqdqkvglngIASFqcvaegsplpsvfwtqegsqvlmfpgnayghlhvtqegtlriqgvqkedaGFFVCSALSVAGSTTVRAFLQVtsvedtpppivqvgpsnqtlplhsvaflpcqavgsppphirwykngnslppedtrinvsssgslqidvlrddfraepkdtrvasgetallecgppkgqpeptlhwkkngqfidlesskrvsilgdpwfdsrrsrsIFGSVLGALSDDQWKLIAKNIRNQQQHGT
Flexible Loop (DISEMBL)
mitevkksdegkyqCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEPKDTRvasgetallecgppkgqpeptlHWKKNGQFIDLESSKRVSILgdpwfdsrrsRSIFGSVLGALSDDQWKLIAKNIRNQQQHGT
Low Complexity Region (SEG)
MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHGT
Disordered region (IsUnstruct)
************YQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYK***********************************************************HWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN*********
Disordered Region (DISOPRED)
MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVL***********VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK*VSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIA****N******
Disordered Region (DISEMBL)
********DEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI********
Disordered Region (DISPRO)
*I*EVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	292	2.2.26 [Sep-21-2011]
Q9HCK4	1378	Roundabout homolog 2 OS=H	yes	N/A	0.671	0.142	0.452	8e-43
O89026	1612	Roundabout homolog 1 OS=M	yes	N/A	0.657	0.119	0.451	3e-42
O55005	1651	Roundabout homolog 1 OS=R	yes	N/A	0.976	0.172	0.360	7e-42
Q9Y6N7	1651	Roundabout homolog 1 OS=H	no	N/A	0.657	0.116	0.446	2e-41
Q9Z2I4	1366	Roundabout homolog 3 OS=M	no	N/A	0.674	0.144	0.420	3e-40
Q96MS0	1386	Roundabout homolog 3 OS=H	no	N/A	0.657	0.138	0.421	2e-39
Q7TPD3	1470	Roundabout homolog 2 OS=M	no	N/A	0.671	0.133	0.439	4e-39
G5EBF1	1273	Protein sax-3 OS=Caenorha	yes	N/A	0.671	0.153	0.434	3e-38
A1KZ92	1463	Peroxidasin-like protein	no	N/A	0.763	0.152	0.319	7e-26
Q96RW7	5635	Hemicentin-1 OS=Homo sapi	no	N/A	0.770	0.039	0.303	9e-24

>sp|Q9HCK4|ROBO2_HUMAN Roundabout homolog 2 OS=Homo sapiens GN=ROBO2 PE=1 SV=2

 Score =  174 bits (440), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 118/201 (58%), Gaps = 5/201 (2%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
           I +   +DEG Y C  +N VG+ E   A LTV APP FVVRP+DQ V      +F C  +
Sbjct: 280 IKKTMSTDEGTYMCIAENRVGKMEAS-ATLTVRAPPQFVVRPRDQIVAQGRTVTFPCETK 338

Query: 62  GSPLPSVFWTQEGSQVLMFPGNAY---GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
           G+P P+VFW +EGSQ L+FP           V+  G L I  +Q+ DAG+++C AL+VAG
Sbjct: 339 GNPQPAVFWQKEGSQNLLFPNQPQQPNSRCSVSPTGDLTITNIQRSDAGYYICQALTVAG 398

Query: 119 STTVRAFLQVTSV-EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
           S   +A L+VT V  D PPPI+  GP+NQTL +   A L C+A G P P I W K G + 
Sbjct: 399 SILAKAQLEVTDVLTDRPPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTF 458

Query: 178 PPEDTRINVSSSGSLQIDVLR 198
           P  D R  +   G+LQI  LR
Sbjct: 459 PGRDPRATIQEQGTLQIKNLR 479

Receptor for SLIT2, and probably SLIT1, which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development.
Homo sapiens (taxid: 9606)

>sp|O89026|ROBO1_MOUSE Roundabout homolog 1 OS=Mus musculus GN=Robo1 PE=1 SV=1

 Score =  172 bits (435), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 89/197 (45%), Positives = 119/197 (60%), Gaps = 5/197 (2%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
           I +V   D G Y C  +NMVG+ E   A LTV  PP FVV+P+DQ V L    +FQC A 
Sbjct: 278 IRKVTAGDMGSYTCVAENMVGKAEAS-ATLTVQEPPHFVVKPRDQVVALGRTVTFQCEAT 336

Query: 62  GSPLPSVFWTQEGSQVLMF---PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
           G+P P++FW +EGSQ L+F   P  +     V+Q G L I  VQ+ D G+++C  L+VAG
Sbjct: 337 GNPQPAIFWRREGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAG 396

Query: 119 STTVRAFLQVTSV-EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
           S   +A+L+VT V  D PPP+++ GP NQT+ +     L C A GSP P I W K+G  +
Sbjct: 397 SIITKAYLEVTDVIADRPPPVIRQGPVNQTVAVDGTLILSCVATGSPAPTILWRKDGVLV 456

Query: 178 PPEDTRINVSSSGSLQI 194
             +D+RI    SG LQI
Sbjct: 457 STQDSRIKQLESGVLQI 473

Receptor for SLIT1 and SLIT2 which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development. In axon growth cones, the silencing of the attractive effect of NTN1 by SLIT2 may require the formation of a ROBO1-DCC complex (By similarity). May be required for lung development.

Mus musculus (taxid: 10090)

>sp|O55005|ROBO1_RAT Roundabout homolog 1 OS=Rattus norvegicus GN=Robo1 PE=1 SV=1

 Score =  171 bits (433), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 155/302 (51%), Gaps = 17/302 (5%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
           I +V   D G Y C  +NMVG+ E   A LTV  PP FVV+P+DQ V L    +FQC A 
Sbjct: 317 IRKVTAGDMGSYTCVAENMVGKAEAS-ATLTVQEPPHFVVKPRDQVVALGRTVTFQCEAT 375

Query: 62  GSPLPSVFWTQEGSQVLMF---PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
           G+P P++FW +EGSQ L+F   P  +     V+Q G L +  VQ+ D G+++C  L+VAG
Sbjct: 376 GNPQPAIFWRREGSQNLLFSYQPPQSSSRFSVSQTGDLTVTNVQRSDVGYYICQTLNVAG 435

Query: 119 STTVRAFLQVTSV-EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
           S   +A+L+VT V  D PPP+++ GP NQT+ +     L C A GSP P I W K+G  +
Sbjct: 436 SIITKAYLEVTDVIADRPPPVIRQGPVNQTVAVDGTLTLSCVATGSPVPTILWRKDGVLV 495

Query: 178 PPEDTRINVSSSGSLQIDV--LRDDFR-----AEPKDTRVASGETALLECGPPKGQPEPT 230
             +D+RI    SG LQI    L D  R     + P      S    + E G P   P PT
Sbjct: 496 STQDSRIKQLESGVLQIRYAKLGDTGRYTCTASTPSGEATWSAYIEVQEFGVPVQPPRPT 555

Query: 231 ----LHWKKNGQFIDLESSKRVSILGDPWFDSRRS-RSIFGSVLGALSDDQWKLIAKNIR 285
               +    +   +   S   V++L  P  +S  +  S         S   W+ +A+N++
Sbjct: 556 DPNLIPSAPSKPEVTDVSKNTVTLLWQPNLNSGATPTSYIIEAFSHASGSSWQTVAENVK 615

Query: 286 NQ 287
            +
Sbjct: 616 TE 617

Receptor for SLIT1 and SLIT2 which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development. In axon growth cones, the silencing of the attractive effect of NTN1 by SLIT2 may require the formation of a ROBO1-DCC complex. May be required for lung development.

Rattus norvegicus (taxid: 10116)

>sp|Q9Y6N7|ROBO1_HUMAN Roundabout homolog 1 OS=Homo sapiens GN=ROBO1 PE=1 SV=1

 Score =  169 bits (429), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 88/197 (44%), Positives = 119/197 (60%), Gaps = 5/197 (2%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
           I +V   D G Y C  +NMVG+ E   A LTV  PP FVV+P+DQ V L    +FQC A 
Sbjct: 317 IRKVTAGDMGSYTCVAENMVGKAEAS-ATLTVQEPPHFVVKPRDQVVALGRTVTFQCEAT 375

Query: 62  GSPLPSVFWTQEGSQVLMF---PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
           G+P P++FW +EGSQ L+F   P  +     V+Q G L I  VQ+ D G+++C  L+VAG
Sbjct: 376 GNPQPAIFWRREGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAG 435

Query: 119 STTVRAFLQVTSV-EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
           S   +A+L+VT V  D PPP+++ GP NQT+ +     L C A GSP P I W K+G  +
Sbjct: 436 SIITKAYLEVTDVIADRPPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLV 495

Query: 178 PPEDTRINVSSSGSLQI 194
             +D+RI    +G LQI
Sbjct: 496 STQDSRIKQLENGVLQI 512

Receptor for SLIT1 and SLIT2 which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development. In axon growth cones, the silencing of the attractive effect of NTN1 by SLIT2 may require the formation of a ROBO1-DCC complex. May be required for lung development.

Homo sapiens (taxid: 9606)

>sp|Q9Z2I4|ROBO3_MOUSE Roundabout homolog 3 OS=Mus musculus GN=Robo3 PE=1 SV=2

 Score =  165 bits (418), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 123/202 (60%), Gaps = 5/202 (2%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
           I +V   DEG Y C  +N VG  E     L+VH PP FV +PQ+Q V      SFQC  +
Sbjct: 313 IDQVSSEDEGTYTCVAENSVGRAEAS-GSLSVHVPPQFVTKPQNQTVAPGANVSFQCETK 371

Query: 62  GSPLPSVFWTQEGSQVLMFPGNA---YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
           G+P P++FW +EGSQVL+FP  +    G L V+  G L I  V+  D G++VC A+SVAG
Sbjct: 372 GNPPPAIFWQKEGSQVLLFPSQSLQPMGRLLVSPRGQLNITEVKIGDGGYYVCQAVSVAG 431

Query: 119 STTVRAFLQVTSVE-DTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
           S   +A L++     D  PPI+  GP+NQTL L S  +LPC+ +G+P P+I+W K+   L
Sbjct: 432 SILAKALLEIKGASIDGLPPIILQGPANQTLVLGSSVWLPCRVIGNPQPNIQWKKDERWL 491

Query: 178 PPEDTRINVSSSGSLQIDVLRD 199
             +D++ N+  +G+L I  +++
Sbjct: 492 QGDDSQFNLMDNGTLHIASIQE 513

Thought to be involved during neural development in axonal navigation at the ventral midline of the neural tube. In spinal chord development plays a role in guiding commissural axons probably by preventing premature sensitivity to Slit proteins thus inhibiting Slit signaling through ROBO1. Required for hindbrain axon midline crossing.

Mus musculus (taxid: 10090)

>sp|Q96MS0|ROBO3_HUMAN Roundabout homolog 3 OS=Homo sapiens GN=ROBO3 PE=1 SV=2

 Score =  162 bits (410), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 83/197 (42%), Positives = 115/197 (58%), Gaps = 5/197 (2%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
           I  V   DEG Y C  +N VG  E     L+VH PP  V +PQDQ        +FQC  +
Sbjct: 313 IGHVSAEDEGTYTCVAENSVGRAEAS-GSLSVHVPPQLVTQPQDQMAAPGESVAFQCETK 371

Query: 62  GSPLPSVFWTQEGSQVLMFPGNAY---GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
           G+P P++FW +EGSQVL+FP  +    G   V+  G L I  VQ+ DAG++VC A+SVAG
Sbjct: 372 GNPPPAIFWQKEGSQVLLFPSQSLQPTGRFSVSPRGQLNITAVQRGDAGYYVCQAVSVAG 431

Query: 119 STTVRAFLQVTSVE-DTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
           S   +A L++     D  PP++  GP+NQTL L S  +LPC+  G+P P +RW K+G  L
Sbjct: 432 SILAKALLEIKGASLDGLPPVILQGPANQTLVLGSSVWLPCRVTGNPQPSVRWKKDGQWL 491

Query: 178 PPEDTRINVSSSGSLQI 194
             +D +    ++G+L I
Sbjct: 492 QGDDLQFKTMANGTLYI 508

Thought to be involved during neural development in axonal navigation at the ventral midline of the neural tube. In spinal chord development plays a role in guiding commissural axons probably by preventing premature sensitivity to Slit proteins thus inhibiting Slit signaling through ROBO1 (By similarity). Required for hindbrain axon midline crossing.

Homo sapiens (taxid: 9606)

>sp|Q7TPD3|ROBO2_MOUSE Roundabout homolog 2 OS=Mus musculus GN=Robo2 PE=2 SV=2

 Score =  162 bits (409), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 90/205 (43%), Positives = 116/205 (56%), Gaps = 9/205 (4%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH----APPSFVVRPQDQKVGLNGIASFQ 57
           I +   +DEG Y C  +N VG+ E   A LTV     APP FVVRP+DQ V      +F 
Sbjct: 280 IKKAMSTDEGTYVCIAENRVGKVEAS-ATLTVRVRPVAPPQFVVRPRDQIVAQGRTVTFP 338

Query: 58  CVAEGSPLPSVFWTQEGSQVLMFPGNAY---GHLHVTQEGTLRIQGVQKEDAGFFVCSAL 114
           C  +G+P P+VFW +EGSQ L+FP           V+  G L I  +Q+ DAG+++C AL
Sbjct: 339 CETKGNPQPAVFWQKEGSQNLLFPNQPQQPNSRCSVSPTGDLTITNIQRSDAGYYICQAL 398

Query: 115 SVAGSTTVRAFLQVTSV-EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKN 173
           +VAGS   +A L+VT V  D PPPI+  GP NQTL +   A L C+A G P P I W K 
Sbjct: 399 TVAGSILAKAQLEVTDVLTDRPPPIILQGPINQTLAVDGTALLKCKATGEPLPVISWLKE 458

Query: 174 GNSLPPEDTRINVSSSGSLQIDVLR 198
           G +    D R  +   G+LQI  LR
Sbjct: 459 GFTFLGRDPRATIQDQGTLQIKNLR 483

Receptor for SLIT2, and probably SLIT1, which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development.

Mus musculus (taxid: 10090)

>sp|G5EBF1|SAX3_CAEEL Protein sax-3 OS=Caenorhabditis elegans GN=sax-3 PE=2 SV=1

 Score =  159 bits (401), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 89/205 (43%), Positives = 122/205 (59%), Gaps = 9/205 (4%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
           I  V+ SDEG+Y CY +N  G  E   A L V APPSF  +P DQ V   G A+F+C   
Sbjct: 283 IERVQPSDEGEYVCYARNPAGTLEAS-AHLRVQAPPSFQTKPADQSVPAGGTATFECTLV 341

Query: 62  GSPLPSVFWTQEGSQVLMFPG--NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
           G P P+ FW++EG Q L+FP   +A G   V+  GTL I+ V++ D G +VC+ ++ AGS
Sbjct: 342 GQPSPAYFWSKEGQQDLLFPSYVSADGRTKVSPTGTLTIEEVRQVDEGAYVCAGMNSAGS 401

Query: 120 TTVRAFLQVTSVEDT------PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKN 173
           +  +A L+VT+   T      PPP ++ G  NQTL + S A LPCQA G P P I W ++
Sbjct: 402 SLSKAALKVTTKAVTGNTPAKPPPTIEHGHQNQTLMVGSSAILPCQASGKPTPGISWLRD 461

Query: 174 GNSLPPEDTRINVSSSGSLQIDVLR 198
           G  +   D+RI+  S+GSL I  L+
Sbjct: 462 GLPIDITDSRISQHSTGSLHIADLK 486

Required to confine migrating sex myoblasts to the ventral muscle quadrants during their migration through the body and for multiple aspects of sensory, motor, and interneuron axon guidance.

Caenorhabditis elegans (taxid: 6239)

>sp|A1KZ92|PXDNL_HUMAN Peroxidasin-like protein OS=Homo sapiens GN=PXDNL PE=1 SV=3

 Score =  118 bits (295), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 87/272 (31%), Positives = 128/272 (47%), Gaps = 49/272 (18%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALL---TVHAPPSFVVRPQDQKVGLNGIASFQ 57
           MI   ++SD+G YQC  +N  GE +T+ A+L   ++ A PSFV++PQD +V +    + +
Sbjct: 291 MIRNTRESDQGVYQCMARNSAGEAKTQSAMLRYSSLPAKPSFVIQPQDTEVLIGTSTTLE 350

Query: 58  CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117
           C+A G P P + WT++    L       G  HV     L +Q + + D G F C A +  
Sbjct: 351 CMATGHPHPLITWTRDNGLEL------DGSRHVATSSGLYLQNITQRDHGRFTCHANNSH 404

Query: 118 GSTTVRAFLQVTSVEDTPPPIVQVGPSNQ-TLPLHSVAFLPCQAVGSPPPHIRWYKNGNS 176
           G+    A + V +     PP   V P +Q  L  H+V +L C+A G+PPP I W K G  
Sbjct: 405 GTVQAAANIIVQA-----PPQFTVTPKDQVVLEEHAVEWL-CEADGNPPPVIVWTKTGGQ 458

Query: 177 LPPEDTRINVSSSGSLQID-VLRDD------------------------------FRAEP 205
           LP E     V SSG+L+ID   + D                              F   P
Sbjct: 459 LPVEGQH-TVLSSGTLRIDRAAQHDQGQYECQAVSSLGVKKVSVQLTVKPKALAVFTQLP 517

Query: 206 KDTRVASGETALLECGPPKGQPEPTLHWKKNG 237
           +DT V  G+   + C   +G+P+P + W K G
Sbjct: 518 QDTSVEVGKNINISCH-AQGEPQPIITWNKEG 548

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|Q96RW7|HMCN1_HUMAN Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2

 Score =  110 bits (276), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 117/267 (43%), Gaps = 42/267 (15%)

Query: 2    ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
            I      D   Y C   N+ G + T+  +LTV+ PP+    PQ   + LN     +C+AE
Sbjct: 3679 INNADLGDTANYTCVASNIAG-KTTREFILTVNVPPNIKGGPQSLVILLNKSTVLECIAE 3737

Query: 62   GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
            G P P + W ++G+   +  GN +    + + G L IQ     D G ++C A + AG+  
Sbjct: 3738 GVPTPRITWRKDGA---VLAGN-HARYSILENGFLHIQSAHVTDTGRYLCMATNAAGTDR 3793

Query: 122  VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED 181
             R  LQV       PP +  GP+N T+ ++    L C+A G P P I W KNG+ L  + 
Sbjct: 3794 RRIDLQVHV-----PPSIAPGPTNMTVIVNVQTTLACEATGIPKPSINWRKNGHLLNVDQ 3848

Query: 182  TR--INVSSSGSLQI----------------DVLRDDFRA-------------EPKDTRV 210
             +    + SSGSL I                +   DD R              EP D  V
Sbjct: 3849 NQNSYRLLSSGSLVIISPSVDDTATYECTVTNGAGDDKRTVDLTVQVPPSIADEPTDFLV 3908

Query: 211  ASGETALLECGPPKGQPEPTLHWKKNG 237
                 A++ C    G P P++HW KNG
Sbjct: 3909 TKHAPAVITC-TASGVPFPSIHWTKNG 3934

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
328712717	1397	PREDICTED: roundabout homolog 2-like [Ac	0.667	0.139	0.688	3e-74
242012205	999	predicted protein [Pediculus humanus cor	0.671	0.196	0.611	4e-62
374637164	1055	roundabout-like protein, partial [Tribol	0.647	0.179	0.596	7e-59
91079308	1073	PREDICTED: similar to roundabout 1 [Trib	0.647	0.176	0.596	8e-59
270004828	949	roundabout [Tribolium castaneum]	0.647	0.199	0.596	9e-59
158287827	726	AGAP010970-PA [Anopheles gambiae str. PE	0.681	0.274	0.532	4e-56
312377932	324	hypothetical protein AND_10634 [Anophele	0.664	0.598	0.530	1e-54
198456937	1398	GA12341 [Drosophila pseudoobscura pseudo	0.667	0.139	0.517	3e-53
195150159	1362	GL10711 [Drosophila persimilis] gi|19410	0.667	0.143	0.517	3e-53
195487979	1436	GE11841 [Drosophila yakuba] gi|194178222	0.667	0.135	0.507	5e-53

>gi|328712717|ref|XP_001952693.2| PREDICTED: roundabout homolog 2-like [Acyrthosiphon pisum]

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 135/196 (68%), Positives = 157/196 (80%), Gaps = 1/196 (0%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
           I  V   DEG Y C  +N VG  + K A LTVH+PP+FV RP+DQKVGLNGIA+F CVA+
Sbjct: 383 IINVIAQDEGLYVCNAENDVGSEKAK-ASLTVHSPPTFVTRPKDQKVGLNGIANFDCVAQ 441

Query: 62  GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
           G+P PSVFW++EGSQVLMFPGNAYGH HVTQ+GTLRIQG QKEDAGF VCSALSVAGS T
Sbjct: 442 GNPPPSVFWSREGSQVLMFPGNAYGHFHVTQDGTLRIQGAQKEDAGFLVCSALSVAGSVT 501

Query: 122 VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED 181
            RAFLQVTSV+D PPP+V +GP+NQTL   S A LPCQA G P P I+WY+NGN L P+D
Sbjct: 502 WRAFLQVTSVQDVPPPVVDIGPTNQTLATRSAATLPCQASGIPLPTIKWYRNGNYLSPDD 561

Query: 182 TRINVSSSGSLQIDVL 197
            R+ ++SSG+LQID L
Sbjct: 562 PRVTITSSGTLQIDEL 577

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012205|ref|XP_002426824.1| predicted protein [Pediculus humanus corporis] gi|212511037|gb|EEB14086.1| predicted protein [Pediculus humanus corporis]

 Score =  244 bits (622), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 121/198 (61%), Positives = 146/198 (73%), Gaps = 2/198 (1%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
           MI  V   DEG Y C  +N+VG+   + A LTVH+PP+F+ +PQ+QKVGLNGIA+F+CVA
Sbjct: 154 MIEHVSLEDEGIYICDAENVVGKISAR-ASLTVHSPPTFIRKPQNQKVGLNGIATFECVA 212

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
           +G+P PSVFWT+EGSQ LMFPGNAYG  H+T EG+LRIQG Q+ED+GF VCSALSVAGS 
Sbjct: 213 KGNPPPSVFWTKEGSQDLMFPGNAYGRFHITPEGSLRIQGAQREDSGFLVCSALSVAGSA 272

Query: 121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE 180
           TVRAFLQVTSV D PPPI+  GP+NQTL    VA L CQ        I+WYKNGN L   
Sbjct: 273 TVRAFLQVTSVADVPPPILDFGPTNQTLRYGEVASLLCQ-TSQKDAKIKWYKNGNPLDEG 331

Query: 181 DTRINVSSSGSLQIDVLR 198
             R ++  SG+L ID L+
Sbjct: 332 KERFHIKPSGTLLIDSLQ 349

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|374637164|gb|AEZ54711.1| roundabout-like protein, partial [Tribolium castaneum]

 Score =  233 bits (594), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 117/196 (59%), Positives = 145/196 (73%), Gaps = 7/196 (3%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
           +I  V+ SDEG Y C  +N+VG    K A L V++PP+F+ +P+DQKV LNG+  F C A
Sbjct: 249 LIDNVQTSDEGIYICAAENVVGSITAK-ASLVVNSPPTFIEKPRDQKVSLNGVVEFHCSA 307

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
            G+P PSVFWT+EGSQ+LMFP N+YGH+HV   GTLRIQGVQ+EDAGF VCSALSVAGS+
Sbjct: 308 TGNPPPSVFWTKEGSQMLMFPDNSYGHMHVNAHGTLRIQGVQREDAGFLVCSALSVAGSS 367

Query: 121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPP---PHIRWYKNGNSL 177
           +VRAFLQVTSV D PPPI+Q+GP+NQTLPLHS+  L C+A  SP    P IRW K+G  L
Sbjct: 368 SVRAFLQVTSVADLPPPIIQIGPANQTLPLHSMVTLHCKA-SSPEGEQPKIRWSKDGKVL 426

Query: 178 PPEDT--RINVSSSGS 191
             E    R  +S +G+
Sbjct: 427 QEERLPDRYTISETGT 442

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91079308|ref|XP_967065.1| PREDICTED: similar to roundabout 1 [Tribolium castaneum]

 Score =  233 bits (594), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 117/196 (59%), Positives = 145/196 (73%), Gaps = 7/196 (3%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
           +I  V+ SDEG Y C  +N+VG    K A L V++PP+F+ +P+DQKV LNG+  F C A
Sbjct: 267 LIDNVQTSDEGIYICAAENVVGSITAK-ASLVVNSPPTFIEKPRDQKVSLNGVVEFHCSA 325

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
            G+P PSVFWT+EGSQ+LMFP N+YGH+HV   GTLRIQGVQ+EDAGF VCSALSVAGS+
Sbjct: 326 TGNPPPSVFWTKEGSQMLMFPDNSYGHMHVNAHGTLRIQGVQREDAGFLVCSALSVAGSS 385

Query: 121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPP---PHIRWYKNGNSL 177
           +VRAFLQVTSV D PPPI+Q+GP+NQTLPLHS+  L C+A  SP    P IRW K+G  L
Sbjct: 386 SVRAFLQVTSVADLPPPIIQIGPANQTLPLHSMVTLHCKA-SSPEGEQPKIRWSKDGKVL 444

Query: 178 PPEDT--RINVSSSGS 191
             E    R  +S +G+
Sbjct: 445 QEERLPDRYTISETGT 460

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004828|gb|EFA01276.1| roundabout [Tribolium castaneum]

 Score =  233 bits (593), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 117/196 (59%), Positives = 145/196 (73%), Gaps = 7/196 (3%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
           +I  V+ SDEG Y C  +N+VG    K A L V++PP+F+ +P+DQKV LNG+  F C A
Sbjct: 143 LIDNVQTSDEGIYICAAENVVGSITAK-ASLVVNSPPTFIEKPRDQKVSLNGVVEFHCSA 201

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
            G+P PSVFWT+EGSQ+LMFP N+YGH+HV   GTLRIQGVQ+EDAGF VCSALSVAGS+
Sbjct: 202 TGNPPPSVFWTKEGSQMLMFPDNSYGHMHVNAHGTLRIQGVQREDAGFLVCSALSVAGSS 261

Query: 121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPP---PHIRWYKNGNSL 177
           +VRAFLQVTSV D PPPI+Q+GP+NQTLPLHS+  L C+A  SP    P IRW K+G  L
Sbjct: 262 SVRAFLQVTSVADLPPPIIQIGPANQTLPLHSMVTLHCKA-SSPEGEQPKIRWSKDGKVL 320

Query: 178 PPEDT--RINVSSSGS 191
             E    R  +S +G+
Sbjct: 321 QEERLPDRYTISETGT 336

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158287827|ref|XP_309724.3| AGAP010970-PA [Anopheles gambiae str. PEST] gi|157019376|gb|EAA05623.3| AGAP010970-PA [Anopheles gambiae str. PEST]

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 108/203 (53%), Positives = 150/203 (73%), Gaps = 4/203 (1%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
           +I  V  +D+G Y C   N +G+   K A L V++PP+F+++PQDQK  LNG+ASF+C A
Sbjct: 254 VIRSVVPTDQGMYICEAHNSIGQISAK-AQLIVNSPPTFLIKPQDQKTALNGVASFKCTA 312

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
            G+P PSVFWT+EGSQ LMFP N Y ++ V+ +GTL+I+GVQK+D G+++CSALSVAGST
Sbjct: 313 SGNPQPSVFWTKEGSQTLMFPNNTYDNMQVSVQGTLQIRGVQKDDDGYYICSALSVAGST 372

Query: 121 TVRAFLQVTSVED-TPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGN--SL 177
             RA+LQV + ED +PPPI+Q+ P+NQTLP  +VA LPC+A G+P P IRW KN    +L
Sbjct: 373 VSRAYLQVLTSEDSSPPPILQIVPANQTLPRGTVATLPCRASGNPTPMIRWMKNATDINL 432

Query: 178 PPEDTRINVSSSGSLQIDVLRDD 200
              + RI++   G+L+ID LR++
Sbjct: 433 SGGNGRISIIQGGTLRIDDLRNE 455

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312377932|gb|EFR24641.1| hypothetical protein AND_10634 [Anopheles darlingi]

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 105/198 (53%), Positives = 145/198 (73%), Gaps = 4/198 (2%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
           +I  V  SD+G Y C   N VG+   K A L V++PP+F+++PQ+QK  LNG+A+F+C A
Sbjct: 104 VIRSVVPSDQGLYICEAHNTVGQISAK-AQLIVNSPPTFLIKPQEQKTALNGVATFKCTA 162

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
            G+P PS+FWT+EGSQ LMFP   Y ++ V+ +GTL+I+GVQK+D G+++CSALSVAGST
Sbjct: 163 SGNPPPSMFWTKEGSQTLMFPNKTYDNMQVSMQGTLQIRGVQKDDEGYYICSALSVAGST 222

Query: 121 TVRAFLQVTSVED-TPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGN--SL 177
           T RA+LQV S ED +PPPI+Q+ P+NQTLP   VA LPC A G+P P IRW KN    +L
Sbjct: 223 TSRAYLQVLSSEDSSPPPILQIVPANQTLPQGGVALLPCHATGNPTPMIRWMKNATDINL 282

Query: 178 PPEDTRINVSSSGSLQID 195
              + RI++  +G+L+I+
Sbjct: 283 SGGNGRISIIQTGTLRIN 300

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198456937|ref|XP_001360492.2| GA12341 [Drosophila pseudoobscura pseudoobscura] gi|198135800|gb|EAL25067.2| GA12341 [Drosophila pseudoobscura pseudoobscura]

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 102/197 (51%), Positives = 142/197 (72%), Gaps = 2/197 (1%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
           ++ +  SDEG Y C   N VG+   + A LTVHAPP+F  +P ++KVGLNG   F C+A 
Sbjct: 314 LSNITPSDEGTYVCEAHNNVGQISAR-ASLTVHAPPNFTRKPSNKKVGLNGAVQFPCMAS 372

Query: 62  GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
           G+P PSVFWT+EG   LMFP +++G   V+ EGTL+I  VQ++D GF+VCSA SV  S+T
Sbjct: 373 GNPPPSVFWTKEGVSTLMFPNSSHGRQQVSSEGTLQISDVQQDDEGFYVCSAFSVVDSST 432

Query: 122 VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED 181
           VR FLQV+SV++ PPPI+Q+GP+NQTLP  +VA LPC+A G+P P I+W+ NG ++ P +
Sbjct: 433 VRIFLQVSSVDERPPPIIQIGPTNQTLPKGAVATLPCRATGTPNPRIKWFHNGYAVQPGN 492

Query: 182 TRINVSSSGSLQIDVLR 198
            R ++  S SL++D L+
Sbjct: 493 -RHSIIQSSSLRVDDLQ 508

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195150159|ref|XP_002016022.1| GL10711 [Drosophila persimilis] gi|194109869|gb|EDW31912.1| GL10711 [Drosophila persimilis]

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 102/197 (51%), Positives = 142/197 (72%), Gaps = 2/197 (1%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
           ++ +  SDEG Y C   N VG+   + A LTVHAPP+F  +P ++KVGLNG   F C+A 
Sbjct: 278 LSNITPSDEGTYVCEAHNNVGQISAR-ASLTVHAPPNFTRKPSNKKVGLNGAVQFPCMAS 336

Query: 62  GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
           G+P PSVFWT+EG   LMFP +++G   V+ EGTL+I  VQ++D GF+VCSA SV  S+T
Sbjct: 337 GNPPPSVFWTKEGVSTLMFPNSSHGRQQVSSEGTLQISDVQQDDEGFYVCSAFSVVDSST 396

Query: 122 VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED 181
           VR FLQV+SV++ PPPI+Q+GP+NQTLP  +VA LPC+A G+P P I+W+ NG ++ P +
Sbjct: 397 VRIFLQVSSVDERPPPIIQIGPTNQTLPKGAVATLPCRATGTPNPRIKWFHNGYAVQPGN 456

Query: 182 TRINVSSSGSLQIDVLR 198
            R ++  S SL++D L+
Sbjct: 457 -RHSIIQSSSLRVDDLQ 472

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195487979|ref|XP_002092121.1| GE11841 [Drosophila yakuba] gi|194178222|gb|EDW91833.1| GE11841 [Drosophila yakuba]

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 100/197 (50%), Positives = 141/197 (71%), Gaps = 2/197 (1%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
           I+ +  +DEG Y C   N VG+   + A LTVHAPP+F  RP ++KVGLNG+    C+A 
Sbjct: 350 ISNITPTDEGTYVCEAHNNVGQISAR-AALTVHAPPNFTKRPSNKKVGLNGVVQLPCMAS 408

Query: 62  GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
           G+P PSVFWT+EG   LMFP +++G  HV  +GTL+I  V++ED G++VCSA SV  S+T
Sbjct: 409 GNPPPSVFWTKEGLSTLMFPNSSHGRQHVAADGTLQITDVRQEDEGYYVCSAFSVVDSST 468

Query: 122 VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED 181
           VR FLQV+SV++ PPPI+Q+GP+NQTLP  SVA LPC+A G+P P I+W+ NG+++   +
Sbjct: 469 VRVFLQVSSVDERPPPIIQIGPANQTLPKGSVATLPCRATGNPSPRIKWFHNGHAVQAGN 528

Query: 182 TRINVSSSGSLQIDVLR 198
            R ++    SL++D L+
Sbjct: 529 -RNSIIQGSSLRVDDLQ 544

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
FB|FBgn0005631	1429	robo "roundabout" [Drosophila	0.715	0.146	0.474	1.9e-50
UNIPROTKB|F8WBR3	564	ROBO2 "Roundabout homolog 2" [	0.732	0.379	0.436	1.9e-42
UNIPROTKB|Q8UVD7	1614	robo1 "Roundabout-1" [Xenopus	0.965	0.174	0.372	3.1e-42
ZFIN|ZDB-GENE-040426-1874	1287	zgc:77784 "zgc:77784" [Danio r	0.671	0.152	0.453	3.4e-42
RGD|61941	1651	Robo1 "roundabout, axon guidan	0.972	0.172	0.366	2.9e-41
UNIPROTKB|Q9HCK4	1378	ROBO2 "Roundabout homolog 2" [	0.732	0.155	0.436	4.5e-41
MGI|MGI:1274781	1612	Robo1 "roundabout homolog 1 (D	0.780	0.141	0.416	1.2e-40
UNIPROTKB|F1N279	1483	ROBO1 "Uncharacterized protein	0.972	0.191	0.363	1.7e-40
UNIPROTKB|F1N739	1683	ROBO1 "Uncharacterized protein	0.972	0.168	0.363	2.1e-40
UNIPROTKB|Q9Y6N7	1651	ROBO1 "Roundabout homolog 1" [	0.972	0.172	0.363	2.6e-40

FB|FBgn0005631 robo "roundabout" [Drosophila melanogaster (taxid:7227)]

 Score = 537 (194.1 bits), Expect = 1.9e-50, P = 1.9e-50
 Identities = 101/213 (47%), Positives = 146/213 (68%)

Query:     2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
             I+ +  +DEG Y C   N VG+   + +L+ VHAPP+F  RP ++KVGLNG+    C+A 
Sbjct:   345 ISNITPTDEGTYVCEAHNNVGQISARASLI-VHAPPNFTKRPSNKKVGLNGVVQLPCMAS 403

Query:    62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
             G+P PSVFWT+EG   LMFP +++G  HV  +GTL+I  V++ED G++VCSA SV  S+T
Sbjct:   404 GNPPPSVFWTKEGVSTLMFPNSSHGRQHVAADGTLQITDVRQEDEGYYVCSAFSVVDSST 463

Query:   122 VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED 181
             VR FLQV+S+++ PPPI+Q+GP+NQTLP  SVA LPC+A G+P P I+W+ +G+++   +
Sbjct:   464 VRVFLQVSSLDERPPPIIQIGPANQTLPKGSVATLPCRATGNPSPRIKWFHDGHAVQAGN 523

Query:   182 TRINVSSSGSLQIDVLRDDFRAEPKDTRVASGE 214
              R ++    SL++D L+         T  ASGE
Sbjct:   524 -RYSIIQGSSLRVDDLQ--LSDSGTYTCTASGE 553

GO:0007411 "axon guidance" evidence=IMP;TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0035385 "Roundabout signaling pathway" evidence=IGI

GO:0044295 "axonal growth cone" evidence=IDA

GO:0016199 "axon midline choice point recognition" evidence=IMP;TAS

GO:0031982 "vesicle" evidence=IDA

GO:2000274 "regulation of epithelial cell migration, open tracheal system" evidence=IMP

GO:0008038 "neuron recognition" evidence=IMP

GO:0070983 "dendrite guidance" evidence=IMP

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030424 "axon" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0048813 "dendrite morphogenesis" evidence=IMP;TAS

GO:0004872 "receptor activity" evidence=TAS

GO:0007427 "epithelial cell migration, open tracheal system" evidence=TAS

GO:0007432 "salivary gland boundary specification" evidence=IMP

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0022409 "positive regulation of cell-cell adhesion" evidence=IMP

GO:0071666 "Slit-Robo signaling complex" evidence=IDA

GO:0008201 "heparin binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009649 "entrainment of circadian clock" evidence=IDA

GO:0003151 "outflow tract morphogenesis" evidence=IGI

GO:0001964 "startle response" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IGI

GO:0043234 "protein complex" evidence=IPI

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0046716 "muscle cell homeostasis" evidence=IGI

GO:0072499 "photoreceptor cell axon guidance" evidence=IMP

UNIPROTKB|F8WBR3 ROBO2 "Roundabout homolog 2" [Homo sapiens (taxid:9606)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 96/220 (43%), Positives = 125/220 (56%)

Query:     2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
             I +   +DEG Y C  +N VG+ E   A LTV APP FVVRP+DQ V      +F C  +
Sbjct:   280 IKKTMSTDEGTYMCIAENRVGKMEAS-ATLTVRAPPQFVVRPRDQIVAQGRTVTFPCETK 338

Query:    62 GSPLPSVFWTQEGSQVLMFPGNAY---GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
             G+P P+VFW +EGSQ L+FP           V+  G L I  +Q+ DAG+++C AL+VAG
Sbjct:   339 GNPQPAVFWQKEGSQNLLFPNQPQQPNSRCSVSPTGDLTITNIQRSDAGYYICQALTVAG 398

Query:   119 STTVRAFLQVTSV-EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
             S   +A L+VT V  D PPPI+  GP+NQTL +   A L C+A G P P I W K G + 
Sbjct:   399 SILAKAQLEVTDVLTDRPPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTF 458

Query:   178 PPEDTRINVSSSGSLQIDVLR-DDFRAEPKDTRVASGETA 216
             P  D R  +   G+LQI  LR  D          +SGET+
Sbjct:   459 PGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETS 498

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q8UVD7 robo1 "Roundabout-1" [Xenopus laevis (taxid:8355)]

 Score = 461 (167.3 bits), Expect = 3.1e-42, P = 3.1e-42
 Identities = 112/301 (37%), Positives = 159/301 (52%)

Query:     2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
             I +V   D G Y C  +NMVG+ E   A+LTV  PP+FVV+P+DQ V L    +FQC A 
Sbjct:   280 IRKVTAGDMGSYTCVAENMVGKAEAS-AVLTVQEPPNFVVKPRDQVVALGRTVTFQCEAT 338

Query:    62 GSPLPSVFWTQEGSQVLMF---PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
             G+P P++FW +EGSQ L+F   P  +     V+Q G L I  VQK D G+++C  L+VAG
Sbjct:   339 GNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITTVQKSDVGYYICQTLNVAG 398

Query:   119 STTVRAFLQVTSV-EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
             S T +AFL+VT V  D PPP+++ GP NQT+ +     + C A G P P I W K+G  +
Sbjct:   399 SITTKAFLEVTDVVADRPPPVIRQGPVNQTVAVDGTLLMNCIASGIPIPTIHWRKDGILI 458

Query:   178 PPEDTRINVSSSGSLQIDVLR-DDFRAEPKDTRVASGE---TALLEC---GPPKGQP--- 227
             P +D+RI    SG+LQI   +  D           SGE   +A +E    G P   P   
Sbjct:   459 PTQDSRIKQQDSGALQIRYAKLSDTGRYTCTVSTPSGEANWSAFIEVQEFGVPVQPPRAT 518

Query:   228 EPTL--HWKKNGQFIDLESSKRVSILGDPWFDSRRS-RSIFGSVLGALSDDQWKLIAKNI 284
             +P L        +  D+ S   V++   P  +S  +  S         S   W+ +A+N+
Sbjct:   519 DPNLIPSAPSKPEVTDV-SKNTVTLSWQPNLNSGATPTSYLIEAFSHASGSSWQTVAENV 577

Query:   285 R 285
             +
Sbjct:   578 K 578

GO:0007411 "axon guidance" evidence=IMP

GO:0030182 "neuron differentiation" evidence=IMP

ZFIN|ZDB-GENE-040426-1874 zgc:77784 "zgc:77784" [Danio rerio (taxid:7955)]

 Score = 459 (166.6 bits), Expect = 3.4e-42, P = 3.4e-42
 Identities = 92/203 (45%), Positives = 128/203 (63%)

Query:     2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNG-IASFQCVA 60
             +T V+  DEG Y C  +N VG+ E   A+L VH PP   VRP DQ V + G   +FQC  
Sbjct:   282 LTRVRAEDEGTYTCVTENSVGKTEAS-AVLQVHVPPQIDVRPLDQ-VAVQGRTVTFQCGT 339

Query:    61 EGSPLPSVFWTQEGSQVLMFPG---NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117
             +G+PLP+VFW +EGSQ+L+FPG   +  G   V+  G L I  V  ED+G+++C A+SVA
Sbjct:   340 QGNPLPAVFWQKEGSQMLLFPGQPPSQSGRYSVSMSGELSISDVHSEDSGYYICQAISVA 399

Query:   118 GSTTVRAFLQVTS-VEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNS 176
             GS   +A L+V +   D  PPI++ GP+NQTL L S A L C  +GSP P +RW K+G S
Sbjct:   400 GSIIAKALLEVEAGPSDLVPPIIRRGPANQTLALGSSAQLQCHVMGSPMPGVRWEKDGRS 459

Query:   177 LPPEDTRINVSSSGSLQIDVLRD 199
             +P +D  I +  +G+L I  ++D
Sbjct:   460 IPSDDIHIRLMENGTLHISGVKD 482

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

RGD|61941 Robo1 "roundabout, axon guidance receptor, homolog 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 452 (164.2 bits), Expect = 2.9e-41, P = 2.9e-41
 Identities = 111/303 (36%), Positives = 156/303 (51%)

Query:     2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
             I +V   D G Y C  +NMVG+ E   A LTV  PP FVV+P+DQ V L    +FQC A 
Sbjct:   317 IRKVTAGDMGSYTCVAENMVGKAEAS-ATLTVQEPPHFVVKPRDQVVALGRTVTFQCEAT 375

Query:    62 GSPLPSVFWTQEGSQVLMF---PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
             G+P P++FW +EGSQ L+F   P  +     V+Q G L +  VQ+ D G+++C  L+VAG
Sbjct:   376 GNPQPAIFWRREGSQNLLFSYQPPQSSSRFSVSQTGDLTVTNVQRSDVGYYICQTLNVAG 435

Query:   119 STTVRAFLQVTSV-EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
             S   +A+L+VT V  D PPP+++ GP NQT+ +     L C A GSP P I W K+G  +
Sbjct:   436 SIITKAYLEVTDVIADRPPPVIRQGPVNQTVAVDGTLTLSCVATGSPVPTILWRKDGVLV 495

Query:   178 PPEDTRINVSSSGSLQIDV--LRDDFR-----AEPKDTRVASGETALLECGPPKGQPEPT 230
               +D+RI    SG LQI    L D  R     + P      S    + E G P   P PT
Sbjct:   496 STQDSRIKQLESGVLQIRYAKLGDTGRYTCTASTPSGEATWSAYIEVQEFGVPVQPPRPT 555

Query:   231 ---L--HWKKNGQFIDLESSKRVSILGDPWFDSRRS-RSIFGSVLGALSDDQWKLIAKNI 284
                L        +  D+ S   V++L  P  +S  +  S         S   W+ +A+N+
Sbjct:   556 DPNLIPSAPSKPEVTDV-SKNTVTLLWQPNLNSGATPTSYIIEAFSHASGSSWQTVAENV 614

Query:   285 RNQ 287
             + +
Sbjct:   615 KTE 617

GO:0002042 "cell migration involved in sprouting angiogenesis" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=TAS

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISO

GO:0007156 "homophilic cell adhesion" evidence=ISO

GO:0007411 "axon guidance" evidence=ISO;IDA

GO:0007417 "central nervous system development" evidence=IEP

GO:0008046 "axon guidance receptor activity" evidence=IDA

GO:0008285 "negative regulation of cell proliferation" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016199 "axon midline choice point recognition" evidence=IEP;ISO

GO:0021510 "spinal cord development" evidence=IEP

GO:0021836 "chemorepulsion involved in postnatal olfactory bulb interneuron migration" evidence=ISO

GO:0021891 "olfactory bulb interneuron development" evidence=ISO

GO:0030275 "LRR domain binding" evidence=ISO

GO:0030424 "axon" evidence=IDA

GO:0030673 "axolemma" evidence=ISO

GO:0033600 "negative regulation of mammary gland epithelial cell proliferation" evidence=ISO

GO:0035385 "Roundabout signaling pathway" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043025 "neuronal cell body" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0048814 "regulation of dendrite morphogenesis" evidence=IMP

GO:0050772 "positive regulation of axonogenesis" evidence=ISO

GO:0050925 "negative regulation of negative chemotaxis" evidence=ISO

GO:0060763 "mammary duct terminal end bud growth" evidence=ISO

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=ISO

UNIPROTKB|Q9HCK4 ROBO2 "Roundabout homolog 2" [Homo sapiens (taxid:9606)]

 Score = 449 (163.1 bits), Expect = 4.5e-41, P = 4.5e-41
 Identities = 96/220 (43%), Positives = 125/220 (56%)

Query:     2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
             I +   +DEG Y C  +N VG+ E   A LTV APP FVVRP+DQ V      +F C  +
Sbjct:   280 IKKTMSTDEGTYMCIAENRVGKMEAS-ATLTVRAPPQFVVRPRDQIVAQGRTVTFPCETK 338

Query:    62 GSPLPSVFWTQEGSQVLMFPGNAY---GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
             G+P P+VFW +EGSQ L+FP           V+  G L I  +Q+ DAG+++C AL+VAG
Sbjct:   339 GNPQPAVFWQKEGSQNLLFPNQPQQPNSRCSVSPTGDLTITNIQRSDAGYYICQALTVAG 398

Query:   119 STTVRAFLQVTSV-EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
             S   +A L+VT V  D PPPI+  GP+NQTL +   A L C+A G P P I W K G + 
Sbjct:   399 SILAKAQLEVTDVLTDRPPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTF 458

Query:   178 PPEDTRINVSSSGSLQIDVLR-DDFRAEPKDTRVASGETA 216
             P  D R  +   G+LQI  LR  D          +SGET+
Sbjct:   459 PGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETS 498

GO:0016021 "integral to membrane" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0008046 "axon guidance receptor activity" evidence=ISS;NAS

GO:0007417 "central nervous system development" evidence=NAS

GO:0050772 "positive regulation of axonogenesis" evidence=IDA

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0007420 "brain development" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0001656 "metanephros development" evidence=ISS

GO:0007411 "axon guidance" evidence=ISS;TAS

GO:0030673 "axolemma" evidence=ISS

GO:0031290 "retinal ganglion cell axon guidance" evidence=ISS

GO:0016199 "axon midline choice point recognition" evidence=ISS

GO:0001657 "ureteric bud development" evidence=IMP

GO:0050925 "negative regulation of negative chemotaxis" evidence=IDA

GO:0021891 "olfactory bulb interneuron development" evidence=ISS

GO:0061364 "apoptotic process involved in luteolysis" evidence=IEP

GO:0032870 "cellular response to hormone stimulus" evidence=IEP

GO:0051964 "negative regulation of synapse assembly" evidence=ISS

MGI|MGI:1274781 Robo1 "roundabout homolog 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 446 (162.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 100/240 (41%), Positives = 132/240 (55%)

Query:     2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
             I +V   D G Y C  +NMVG+ E   A LTV  PP FVV+P+DQ V L    +FQC A 
Sbjct:   278 IRKVTAGDMGSYTCVAENMVGKAEAS-ATLTVQEPPHFVVKPRDQVVALGRTVTFQCEAT 336

Query:    62 GSPLPSVFWTQEGSQVLMF---PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
             G+P P++FW +EGSQ L+F   P  +     V+Q G L I  VQ+ D G+++C  L+VAG
Sbjct:   337 GNPQPAIFWRREGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAG 396

Query:   119 STTVRAFLQVTSV-EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
             S   +A+L+VT V  D PPP+++ GP NQT+ +     L C A GSP P I W K+G  +
Sbjct:   397 SIITKAYLEVTDVIADRPPPVIRQGPVNQTVAVDGTLILSCVATGSPAPTILWRKDGVLV 456

Query:   178 PPEDTRINVSSSGSLQIDV--LRDDFR-----AEPKDTRVASGETALLECGPPKGQPEPT 230
               +D+RI    SG LQI    L D  R     + P      S    + E G P   P PT
Sbjct:   457 STQDSRIKQLESGVLQIRYAKLGDTGRYTCTASTPSGEATWSAYIEVQEFGVPVQPPRPT 516

GO:0002042 "cell migration involved in sprouting angiogenesis" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISO

GO:0006935 "chemotaxis" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007411 "axon guidance" evidence=ISO;IGI;IMP

GO:0008046 "axon guidance receptor activity" evidence=ISO

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016199 "axon midline choice point recognition" evidence=IGI

GO:0021836 "chemorepulsion involved in postnatal olfactory bulb interneuron migration" evidence=ISO

GO:0021891 "olfactory bulb interneuron development" evidence=IGI

GO:0030154 "cell differentiation" evidence=IEA

GO:0030275 "LRR domain binding" evidence=ISO

GO:0030424 "axon" evidence=ISO

GO:0030673 "axolemma" evidence=IDA

GO:0033600 "negative regulation of mammary gland epithelial cell proliferation" evidence=ISO

GO:0035385 "Roundabout signaling pathway" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0048814 "regulation of dendrite morphogenesis" evidence=ISO

GO:0050772 "positive regulation of axonogenesis" evidence=ISO

GO:0050925 "negative regulation of negative chemotaxis" evidence=ISO

GO:0060763 "mammary duct terminal end bud growth" evidence=IMP

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=ISO

UNIPROTKB|F1N279 ROBO1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 444 (161.4 bits), Expect = 1.7e-40, P = 1.7e-40
 Identities = 110/303 (36%), Positives = 155/303 (51%)

Query:     2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
             I +V   D G Y C  +NMVG+ E   A LTV  PP FVV+P+DQ V L    +FQC A 
Sbjct:   151 IRKVTAGDMGSYTCVAENMVGKAEAS-ATLTVQEPPHFVVKPRDQVVALGRTVTFQCEAT 209

Query:    62 GSPLPSVFWTQEGSQVLMF---PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
             G+P P++FW +EGSQ L+F   P  +     V+Q G L I  VQ+ D G+++C  L+VAG
Sbjct:   210 GNPQPAIFWRREGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAG 269

Query:   119 STTVRAFLQVTSV-EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
             S   +A+L+VT V  D PPP+++ GP NQT+ +     L C A GSP P I W K+G  +
Sbjct:   270 SIITKAYLEVTDVIADRPPPVIRQGPVNQTVAVDGTLVLSCVATGSPVPTILWRKDGVLV 329

Query:   178 PPEDTRINVSSSGSLQIDV--LRDDFR-----AEPKDTRVASGETALLECGPPKGQPEPT 230
               +D+RI    +G LQI    L D  R     + P      S    + E G P   P PT
Sbjct:   330 STQDSRIKQLETGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPT 389

Query:   231 ---L--HWKKNGQFIDLESSKRVSILGDPWFDSRRS-RSIFGSVLGALSDDQWKLIAKNI 284
                L        +  D+ S   V++   P  +S  +  S         S   W+ +A+N+
Sbjct:   390 DPNLIPSAPSKPEVTDV-SRNTVTLSWQPNLNSGATPTSYIIEAFSHASGSSWQTVAENV 448

Query:   285 RNQ 287
             + +
Sbjct:   449 KTE 451

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1N739 ROBO1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 444 (161.4 bits), Expect = 2.1e-40, P = 2.1e-40
 Identities = 110/303 (36%), Positives = 155/303 (51%)

Query:     2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
             I +V   D G Y C  +NMVG+ E   A LTV  PP FVV+P+DQ V L    +FQC A 
Sbjct:   350 IRKVTAGDMGSYTCVAENMVGKAEAS-ATLTVQEPPHFVVKPRDQVVALGRTVTFQCEAT 408

Query:    62 GSPLPSVFWTQEGSQVLMF---PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
             G+P P++FW +EGSQ L+F   P  +     V+Q G L I  VQ+ D G+++C  L+VAG
Sbjct:   409 GNPQPAIFWRREGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAG 468

Query:   119 STTVRAFLQVTSV-EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
             S   +A+L+VT V  D PPP+++ GP NQT+ +     L C A GSP P I W K+G  +
Sbjct:   469 SIITKAYLEVTDVIADRPPPVIRQGPVNQTVAVDGTLVLSCVATGSPVPTILWRKDGVLV 528

Query:   178 PPEDTRINVSSSGSLQIDV--LRDDFR-----AEPKDTRVASGETALLECGPPKGQPEPT 230
               +D+RI    +G LQI    L D  R     + P      S    + E G P   P PT
Sbjct:   529 STQDSRIKQLETGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPT 588

Query:   231 ---L--HWKKNGQFIDLESSKRVSILGDPWFDSRRS-RSIFGSVLGALSDDQWKLIAKNI 284
                L        +  D+ S   V++   P  +S  +  S         S   W+ +A+N+
Sbjct:   589 DPNLIPSAPSKPEVTDV-SRNTVTLSWQPNLNSGATPTSYIIEAFSHASGSSWQTVAENV 647

Query:   285 RNQ 287
             + +
Sbjct:   648 KTE 650

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=IEA

GO:0060763 "mammary duct terminal end bud growth" evidence=IEA

GO:0050925 "negative regulation of negative chemotaxis" evidence=IEA

GO:0050772 "positive regulation of axonogenesis" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0035385 "Roundabout signaling pathway" evidence=IEA

GO:0033600 "negative regulation of mammary gland epithelial cell proliferation" evidence=IEA

GO:0030673 "axolemma" evidence=IEA

GO:0030275 "LRR domain binding" evidence=IEA

GO:0021836 "chemorepulsion involved in postnatal olfactory bulb interneuron migration" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0002042 "cell migration involved in sprouting angiogenesis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9Y6N7 ROBO1 "Roundabout homolog 1" [Homo sapiens (taxid:9606)]

 Score = 443 (161.0 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 110/303 (36%), Positives = 155/303 (51%)

Query:     2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
             I +V   D G Y C  +NMVG+ E   A LTV  PP FVV+P+DQ V L    +FQC A 
Sbjct:   317 IRKVTAGDMGSYTCVAENMVGKAEAS-ATLTVQEPPHFVVKPRDQVVALGRTVTFQCEAT 375

Query:    62 GSPLPSVFWTQEGSQVLMF---PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
             G+P P++FW +EGSQ L+F   P  +     V+Q G L I  VQ+ D G+++C  L+VAG
Sbjct:   376 GNPQPAIFWRREGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAG 435

Query:   119 STTVRAFLQVTSV-EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
             S   +A+L+VT V  D PPP+++ GP NQT+ +     L C A GSP P I W K+G  +
Sbjct:   436 SIITKAYLEVTDVIADRPPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLV 495

Query:   178 PPEDTRINVSSSGSLQIDV--LRDDFR-----AEPKDTRVASGETALLECGPPKGQPEPT 230
               +D+RI    +G LQI    L D  R     + P      S    + E G P   P PT
Sbjct:   496 STQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPT 555

Query:   231 ---L--HWKKNGQFIDLESSKRVSILGDPWFDSRRS-RSIFGSVLGALSDDQWKLIAKNI 284
                L        +  D+ S   V++   P  +S  +  S         S   W+ +A+N+
Sbjct:   556 DPNLIPSAPSKPEVTDV-SRNTVTLSWQPNLNSGATPTSYIIEAFSHASGSSWQTVAENV 614

Query:   285 RNQ 287
             + +
Sbjct:   615 KTE 617

GO:0030673 "axolemma" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0060763 "mammary duct terminal end bud growth" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0050772 "positive regulation of axonogenesis" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009986 "cell surface" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0050925 "negative regulation of negative chemotaxis" evidence=IDA

GO:0016199 "axon midline choice point recognition" evidence=ISS

GO:0030275 "LRR domain binding" evidence=IPI

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0021836 "chemorepulsion involved in postnatal olfactory bulb interneuron migration" evidence=IDA

GO:0007399 "nervous system development" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007155 "cell adhesion" evidence=TAS

GO:0008046 "axon guidance receptor activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=IMP

GO:0033600 "negative regulation of mammary gland epithelial cell proliferation" evidence=IMP

GO:0002042 "cell migration involved in sprouting angiogenesis" evidence=IMP

GO:0035385 "Roundabout signaling pathway" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	292
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	4e-22
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	2e-17
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-15
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-12
smart00409	85	smart00409, IG, Immunoglobulin	2e-12
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	5e-10
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	8e-10
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	1e-08
cd00096	74	cd00096, Ig, Immunoglobulin domain	2e-08
smart00410	85	smart00410, IG_like, Immunoglobulin like	3e-08
smart00409	85	smart00409, IG, Immunoglobulin	3e-08
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	3e-08
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	5e-08
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	2e-07
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	5e-07
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	5e-07
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	5e-07
cd00096	74	cd00096, Ig, Immunoglobulin domain	6e-07
pfam00047	62	pfam00047, ig, Immunoglobulin domain	8e-07
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-06
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	9e-06
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	1e-05
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-05
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	2e-05
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	2e-05
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	3e-05
cd05893	75	cd05893, Ig_Palladin_C, C-terminal immunoglobulin	5e-05
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	7e-05
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	1e-04
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	1e-04
cd04979	89	cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like	1e-04
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	2e-04
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	2e-04
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	3e-04
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	3e-04
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	5e-04
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	7e-04
cd05875	77	cd05875, Ig6_hNeurofascin_like, Sixth immunoglobul	8e-04
cd05739	69	cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobul	9e-04
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	0.001
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	0.001
cd05892	75	cd05892, Ig_Myotilin_C, C-terminal immunoglobulin	0.001
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	0.001
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	0.001
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	0.002
smart00410	85	smart00410, IG_like, Immunoglobulin like	0.002
smart00409	85	smart00409, IG, Immunoglobulin	0.002
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	0.002
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	0.002
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	0.002
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	0.002
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	0.003
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	0.003
cd05772	111	cd05772, IgC_SIRP, Signal-regulatory protein (SIRP	0.003
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	0.003
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	0.004
cd05870	98	cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik	0.004
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	0.004

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 88.1 bits (218), Expect = 4e-22
 Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 3/87 (3%)

Query: 54  ASFQCVAEGSPLPSVFWTQEGSQVLMFPGN---AYGHLHVTQEGTLRIQGVQKEDAGFFV 110
            +FQC A G+P P++FW +EGSQ L+F      +     V+Q G L I  VQ+ D G+++
Sbjct: 4   VTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYI 63

Query: 111 CSALSVAGSTTVRAFLQVTSVEDTPPP 137
           C  L+VAGS   +A+L+VT V    PP
Sbjct: 64  CQTLNVAGSILTKAYLEVTDVIADRPP 90

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 75.1 bits (185), Expect = 2e-17
 Identities = 28/50 (56%), Positives = 39/50 (78%), Gaps = 1/50 (2%)

Query: 204 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
           EP DT+VA GE A+LEC PP+G PEPT+ W+K+GQ ++L  ++RV I+ D
Sbjct: 2   EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNL-DNERVRIVDD 50

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 70.4 bits (173), Expect = 1e-15
 Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 8/95 (8%)

Query: 37  PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG-- 94
           P F  +P+D +V     A F C   G P P+V W ++G  +      +     VT EG  
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPL-----RSSDRFKVTYEGGT 55

Query: 95  -TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
            TL I  VQ +D G + C A + AG     A L V
Sbjct: 56  YTLTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 61.4 bits (149), Expect = 2e-12
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 1/86 (1%)

Query: 43  PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ 102
           P    V      +  C A GSP P V W ++G ++L   G            TL I  V 
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVS-RSGSTSTLTISNVT 59

Query: 103 KEDAGFFVCSALSVAGSTTVRAFLQV 128
            ED+G + C+A + +GS +    L V
Sbjct: 60  PEDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 61.4 bits (149), Expect = 2e-12
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 1/86 (1%)

Query: 43  PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ 102
           P    V      +  C A GSP P V W ++G ++L   G            TL I  V 
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVS-RSGSTSTLTISNVT 59

Query: 103 KEDAGFFVCSALSVAGSTTVRAFLQV 128
            ED+G + C+A + +GS +    L V
Sbjct: 60  PEDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 54.7 bits (132), Expect = 5e-10
 Identities = 19/33 (57%), Positives = 24/33 (72%)

Query: 1  MITEVKKSDEGKYQCYVQNMVGERETKPALLTV 33
          +I E +KSDEG Y+C   NMVGERE+  A L+V
Sbjct: 54 LIAEARKSDEGTYKCVATNMVGERESAAARLSV 86

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 53.9 bits (130), Expect = 8e-10
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 54  ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
             FQC   G P+P+V W +E  ++        G   +  + +L+I+ V   D G + C A
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGEL------PKGRAEILDDKSLKIRNVTAGDEGSYTCEA 54

Query: 114 LSVAGSTTVRAFLQV 128
            ++ G     A L V
Sbjct: 55  ENMVGKIEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 52  GIASFQCVAEGSPLPSVFWTQE---GSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGF 108
             ASF C   G P P + W ++      ++M P +  G++ VT  G L I   Q +DAG 
Sbjct: 2   ETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGL 61

Query: 109 FVCSALSVAGSTTVRAFLQV 128
           + C+A +  G       L V
Sbjct: 62  YTCTARNSGGLLRANFPLSV 81

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 49.8 bits (118), Expect = 2e-08
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 54  ASFQCVAEGSPLPSVFWTQEGSQVL--MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
            +  C+A G P P++ W + G  +   +           +   TL I  V  ED+G + C
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 112 SALSVAGSTTVRA 124
            A + AG+ +   
Sbjct: 61  VASNSAGTVSASV 73

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 50.2 bits (120), Expect = 3e-08
 Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 143 PSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG---SLQI-DVLR 198
           P + T+       L C+A GSPPP + WYK G  L  E  R +VS SG   +L I +V  
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 199 DD 200
           +D
Sbjct: 61  ED 62

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 50.2 bits (120), Expect = 3e-08
 Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 143 PSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG---SLQI-DVLR 198
           P + T+       L C+A GSPPP + WYK G  L  E  R +VS SG   +L I +V  
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 199 DD 200
           +D
Sbjct: 61  ED 62

Length = 85

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 49.6 bits (118), Expect = 3e-08
 Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 56  FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
           F C A+G P P + WT+ GSQ+ +       HL V   GTLRI  V   D G + C A++
Sbjct: 7   FLCEAQGYPQPVIAWTKGGSQLSV----DRRHL-VLSSGTLRISRVALHDQGQYECQAVN 61

Query: 116 VAGSTTVRAFLQV 128
           + GS    A L V
Sbjct: 62  IVGSQRTVAQLTV 74

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 48.7 bits (116), Expect = 5e-08
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 58  CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117
           C A+G P P++ W ++G QV        G  H++ EG L I+ V   D G + C A +  
Sbjct: 5   CSAQGDPEPTITWNKDGVQV-----TESGKFHISPEGYLAIRDVGVADQGRYECVARNTI 59

Query: 118 GSTTV 122
           G  +V
Sbjct: 60  GYASV 64

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 47.2 bits (112), Expect = 2e-07
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 54  ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV-TQEGTLRIQGVQKEDAGFFVCS 112
           A  +C A G P P + W ++G     FP      +HV  ++    I  V+ ED G + C+
Sbjct: 1   ARLECAATGHPTPQIAWQKDGG--TDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCT 58

Query: 113 ALSVAGSTTVRAFLQV 128
           A + AGS +  A L V
Sbjct: 59  AQNTAGSISANATLTV 74

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 6/69 (8%)

Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG---SL 192
           P   Q  P +  +     A   C   G P P + W+K+G  L   D R  V+  G   +L
Sbjct: 1   PKFTQK-PKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSD-RFKVTYEGGTYTL 58

Query: 193 QI-DVLRDD 200
            I +V  DD
Sbjct: 59  TISNVQPDD 67

Length = 90

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 45.9 bits (109), Expect = 5e-07
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 54  ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
            +  C AEG+P+P++ W ++G  +         +  V    TL I+ V  ED+G + C A
Sbjct: 5   VTLTCPAEGNPVPNITWLKDGKPL------PESNRFVASGSTLTIKSVSLEDSGLYTCVA 58

Query: 114 LSVAG 118
            + AG
Sbjct: 59  ENSAG 63

Length = 63

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 46.0 bits (109), Expect = 5e-07
 Identities = 20/75 (26%), Positives = 30/75 (40%)

Query: 54  ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
              +C     P P +FW +    +         +        L IQ   KEDAG++  SA
Sbjct: 1   VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSA 60

Query: 114 LSVAGSTTVRAFLQV 128
           ++ AG  +  A L V
Sbjct: 61  VNEAGVVSCNARLDV 75

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 45.9 bits (108), Expect = 6e-07
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 154 AFLPCQAVGSPPPHIRWYKNGNSLPPE------DTRINVSSSGSLQI-DVLRDD 200
             L C A G PPP I W KNG  LP         +R   S S +L I +V  +D
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLED 54

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 45.2 bits (107), Expect = 8e-07
 Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 54  ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
            +  C   G P   V W +EG  +           +     TL I  V  ED+G + C  
Sbjct: 4   VTLTCSVSGPPQVDVTWFKEGKGLE-ESTTVGTDENRVSSITLTISNVTPEDSGTYTCVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSI 250
           F  +PKD  V  GE+A   C    G P+PT+ W K+GQ   L SS R  +
Sbjct: 3   FTQKPKDVEVQEGESARFTC-TVTGDPDPTVSWFKDGQ--PLRSSDRFKV 49

Length = 90

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 42.4 bits (100), Expect = 9e-06
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 156 LPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
           L C A G+P P+I W K+G  LP  +    V+S  +L I  V  +D
Sbjct: 7   LTCPAEGNPVPNITWLKDGKPLPESNRF--VASGSTLTIKSVSLED 50

Length = 63

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 57  QCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 116
           +C  + +P P++ W++ G+++L         + +  +G+L I  V K D G + C A + 
Sbjct: 7   ECKPKAAPKPTISWSK-GTELLT----NSSRICIWPDGSLEILNVTKSDEGKYTCFAENF 61

Query: 117 AGSTTVRAFLQV 128
            G       L V
Sbjct: 62  FGKANSTGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 1  MITEVKKSDEGKYQCYVQNMVGERETKPALLTV 33
           I+ V+  DEGKY C   N  GE E   A LTV
Sbjct: 59 TISNVQPDDEGKYTCVATNSAGEAEAS-AELTV 90

Length = 90

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 8/94 (8%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQ-EGSQVLMFPGNAYGHLHVTQEG 94
           P   VV P+D         + +C A G+P+P + W + +GS   M               
Sbjct: 1   PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGS---MPSSA----EISMSGA 53

Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
            L+I  +Q ED G + C A ++ G  T +  + V
Sbjct: 54  VLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV 87

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
           PP  V  P D  V     A+  C AEG P P++ W + G  +     +   H  V   G+
Sbjct: 1   PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGS 60

Query: 96  L---RIQGVQK--EDAGFFVCSALSVAGSTTVRA 124
           L   R+   +K   D G +VC A +  G    R 
Sbjct: 61  LFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRN 94

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 56  FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
           F+C   G P P+V W + G  V+  P +   +  + +E  L++ G+ K D GF+ C A +
Sbjct: 4   FECEVTGKPTPTVKWVKNGDMVI--PSD---YFKIVKEHNLQVLGLVKSDEGFYQCIAEN 58

Query: 116 VAGSTTVRAFL 126
             G+    A L
Sbjct: 59  DVGNVQAGAQL 69

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin

 Score = 40.4 bits (94), Expect = 5e-05
 Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 14/80 (17%)

Query: 56  FQCVAEGSPLPSVFW-------TQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGF 108
            +C   G P P +FW       T    +V M   N  G++       L IQG  KEDAG+
Sbjct: 3   LECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDN-CGYI------CLLIQGATKEDAGW 55

Query: 109 FVCSALSVAGSTTVRAFLQV 128
           +  SA + AG  +  A L V
Sbjct: 56  YTVSAKNEAGIVSCTARLDV 75

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 40.3 bits (94), Expect = 7e-05
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 151 HSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI 194
            +V F  C+A G P P I W K G+ L   D R  V SSG+L+I
Sbjct: 3   QTVDF-LCEAQGYPQPVIAWTKGGSQLSV-DRRHLVLSSGTLRI 44

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL----PPEDTRINVSSSG 190
           PP IV+  PS+  +     A L C+A G P P I+W KNG  L        +   V  SG
Sbjct: 1   PPRIVE-HPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSG 59

Query: 191 SL 192
           SL
Sbjct: 60  SL 61

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 11/62 (17%)

Query: 143 PSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED-----------TRINVSSSGS 191
            S+    + S     C+A G+P P  RW KNG  L  E+           T++++S SG 
Sbjct: 6   ISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGM 65

Query: 192 LQ 193
            Q
Sbjct: 66  YQ 67

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143180 cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like domain of semaphorin

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 3/78 (3%)

Query: 48  VGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAG 107
           V        +C  + S L SV W  +G   L         L VT++G L I+ V   DAG
Sbjct: 8   VVEGNSVFLECSPK-SNLASVVWLFQG-GPLQRKEEPEERLLVTEDGLL-IRSVSPADAG 64

Query: 108 FFVCSALSVAGSTTVRAF 125
            + C ++      T+  +
Sbjct: 65  VYTCQSVEHGFKQTLATY 82

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. Length = 89

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 43  PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ 102
             D +  +     ++C A G+P P+  W + G      P  +   + V + G LRI  + 
Sbjct: 6   ISDTEADIGSSLRWECKASGNPRPAYRWLKNGQ-----PLASENRIEV-EAGDLRITKLS 59

Query: 103 KEDAGFFVCSALSVAGSTTVRAFLQV 128
             D+G + C A +  G+    A L V
Sbjct: 60  LSDSGMYQCVAENKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)

Query: 57  QCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 116
           +C+AEG P P + W + G ++   P +     +  +  TL+I  V +ED G + C+A + 
Sbjct: 4   ECIAEGLPTPEISWIKIGGEL---PADRTKFENFNK--TLKIDNVSEEDDGEYRCTASNS 58

Query: 117 AGSTT 121
            GS  
Sbjct: 59  LGSAR 63

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 155 FLPCQAVGSPPPHIRWYKNGNSLPPE-DTRINVSS-SGSLQIDVLRDDFRAE 204
            + C+A G+PPP   W +NG    PE D R+ +   SG+L ID   +  RAE
Sbjct: 2   VIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDN-MNGGRAE 52

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
           P    V+ +D         + +C A G+P+P + W +    +   P  A     ++  G 
Sbjct: 1   PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPM---PATA----EISMSGA 53

Query: 96  -LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
            L+I  +Q ED G + C A ++ G    +A + V
Sbjct: 54  VLKIFNIQPEDEGTYECEAENIKGKDKHQARVYV 87

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 9/98 (9%)

Query: 31  LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV 90
           + V  P + VV            A+ +C AEGSPLP V W   G  V+            
Sbjct: 2   IPVDGPNATVVYEGGT-------ATIRCTAEGSPLPKVEWIIAGLIVI--QTRTDTLETT 52

Query: 91  TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
                L++  +  E      C+A +  G   V   + V
Sbjct: 53  VDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVTV 90

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 37.9 bits (88), Expect = 7e-04
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVS 249
           P D  V+ G+ A L C   +G+P PT+ W KNGQ ++ +     S
Sbjct: 8   PSDLIVSKGDPATLNC-KAEGRPTPTIQWLKNGQPLETDKDDPRS 51

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143283 cd05875, Ig6_hNeurofascin_like, Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

 Score = 37.3 bits (86), Expect = 8e-04
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 217 LLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSI 250
           ++EC   KG P PT  W +NG+F ++    RVS+
Sbjct: 2   IIEC-EAKGNPVPTFQWTRNGKFFNVAKDPRVSM 34

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. Length = 77

>gnl|CDD|143216 cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 36.8 bits (85), Expect = 9e-04
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 156 LPCQAVGSPPPHIRWYKNGNSLPPED 181
           L C AVG+P P+++W K G  L  ED
Sbjct: 6   LTCVAVGAPMPYVKWMKGGEELTKED 31

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). Length = 69

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 15/87 (17%)

Query: 51  NGIASFQCVAEGSPLPSVFWTQ------EGSQVLMFPGNAYGHLHV---TQEGTLRIQGV 101
               +  C AEG P+P + W +      EG + L       G + V    +  +L ++ V
Sbjct: 16  LEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLD------GRIVVRGHARVSSLTLKDV 69

Query: 102 QKEDAGFFVCSALSVAGSTTVRAFLQV 128
           Q  DAG + C A +  G      +L+V
Sbjct: 70  QLTDAGRYDCEASNRIGGDQQSMYLEV 96

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
           F +EP D     G   +L C   +G+P P + WKK+G  ++L S +R   L +
Sbjct: 2   FLSEPSDIVAVRGGPVVLNCSA-EGEPPPKIEWKKDGVLLNLVSDERRQQLPN 53

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain of myotilin

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 54  ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLH-VTQEGTLRIQGVQKEDAGFFVCS 112
              +C     P P +FW +  ++++ +  +        +   TL I+ V K+DAG++  S
Sbjct: 1   VKLECQISAIPPPKIFW-KRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVS 59

Query: 113 ALSVAGSTTVRAFLQV 128
           A++ AG  T  A L V
Sbjct: 60  AVNEAGVATCHARLDV 75

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. Length = 75

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 53  IASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 112
                C AEG P P++ W   G  +   P +    +     GTL +  VQ  D   + C+
Sbjct: 3   TGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVD---GGTLILSNVQPNDTAVYQCN 59

Query: 113 ALSVAGSTTVRAFLQV 128
           A +V G     AF+ V
Sbjct: 60  ASNVHGYLLANAFVHV 75

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 36.8 bits (85), Expect = 0.001
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 9/73 (12%)

Query: 40  VVRPQDQKVGLNGIASFQCVAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRI 98
           V  P+ Q+V      SF C A+  SP  ++ WT+ G  +   P  A         G L I
Sbjct: 5   VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGL---PSRAMDFN-----GILTI 56

Query: 99  QGVQKEDAGFFVC 111
           + VQ  DAG +VC
Sbjct: 57  RNVQLSDAGTYVC 69

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 41  VRPQDQKVGLNGIASFQCVA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQ 99
           V P D +V +  +A  +C    G P P+V W ++G Q L         + +  +G L I 
Sbjct: 1   VEPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDG-QPLNLDNE---RVRIVDDGNLLIA 56

Query: 100 GVQKEDAGFFVCSALSVAG 118
             +K D G + C A ++ G
Sbjct: 57  EARKSDEGTYKCVATNMVG 75

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
           P    V  GE+  L C    G P P + W K G    L  S R S+    
Sbjct: 1   PPSVTVKEGESVTLSC-EASGSPPPEVTWYKQGG-KLLAESGRFSVSRSG 48

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
           P    V  GE+  L C    G P P + W K G    L  S R S+    
Sbjct: 1   PPSVTVKEGESVTLSC-EASGSPPPEVTWYKQGG-KLLAESGRFSVSRSG 48

Length = 85

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 217 LLECGPPKGQPEPTLHWKKNGQFIDLESSKRVS 249
           +++C   KG P PT  W +NG   D E   RV+
Sbjct: 2   VIKC-EAKGNPPPTFSWTRNGTHFDPEKDPRVT 33

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 8/79 (10%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
            P   V P        G+ +  C AEG P P ++ W + GS      G        +   
Sbjct: 1   KPVITVSPSPSVTSGGGV-TLTCSAEGGPPPPTISWYRNGSISGGSGGL------GSSGS 53

Query: 95  TLRIQGVQKEDAGFFVCSA 113
           TL +  V  ED+G + C A
Sbjct: 54  TLTLSSVTSEDSGTYTCVA 72

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 54  ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT-LRIQGVQKEDAGFFVCS 112
           AS +C AEG PLP + W + G  +          L +   G+ L I  V+ ED G + C 
Sbjct: 1   ASLRCHAEGIPLPRLTWLKNGMDITP---KLSKQLTLIANGSELHISNVRYEDTGAYTCI 57

Query: 113 ALSVAGST 120
           A + AG  
Sbjct: 58  AKNEAGVD 65

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 54  ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
           A+  C A G+P P + W ++    L     + G +   + G L+I+  ++ D G + C A
Sbjct: 1   ATMLCAASGNPDPEITWFKD---FLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVA 57

Query: 114 LSVAGS 119
            + AG+
Sbjct: 58  TNSAGT 63

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 13/27 (48%), Positives = 14/27 (51%)

Query: 156 LPCQAVGSPPPHIRWYKNGNSLPPEDT 182
           L C A G P P I W K G  LP + T
Sbjct: 3   LECIAEGLPTPEISWIKIGGELPADRT 29

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 156 LPCQAVGSPPPHIRWYKNGNSLP-PEDTRINVSSSGSLQI 194
           L C A G PPP I W K+G  L    D R     +GSL I
Sbjct: 19  LNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLI 58

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143249 cd05772, IgC_SIRP, Signal-regulatory protein (SIRP) immunoglobulin-like domain

 Score = 36.4 bits (84), Expect = 0.003
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 10/84 (11%)

Query: 130 SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHI--RWYKNGNSLP-------PE 180
           SV   P   V  GPS +  P  SV F  C A G  P  I  +W KNGN L        PE
Sbjct: 1   SVRAKPSVPVVSGPSGRANPGQSVNF-TCSAHGFSPRDITVKWLKNGNELSAEQPNITPE 59

Query: 181 DTRINVSSSGSLQIDVLRDDFRAE 204
              ++ + + ++Q+ +  DD  ++
Sbjct: 60  GDSVSYNVTSTVQVKLTEDDVHSQ 83

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating machinery. Length = 111

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 35.7 bits (82), Expect = 0.003
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 57  QCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 116
           +C+AEG P P V W +    +         +       TL++  V + D G +VC+A + 
Sbjct: 4   ECIAEGLPTPEVHWDRIDGPLSPNRTKKLNN-----NKTLQLDNVLESDDGEYVCTAENS 58

Query: 117 AGS 119
            GS
Sbjct: 59  EGS 61

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 35.1 bits (81), Expect = 0.004
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 212 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSI 250
            G++  L C P +G P P + W K+G+   L  S R   
Sbjct: 1   EGQSVTLTC-PAEGNPVPNITWLKDGK--PLPESNRFVA 36

Length = 63

>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

 Score = 35.7 bits (82), Expect = 0.004
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 51  NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAY--GHLHVT---QEGTLRIQGVQKED 105
           NG A+  C AEG P+P + W +         G+    G + V     E +L I+ V+  D
Sbjct: 16  NGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSD 75

Query: 106 AGFFVCSALSVAGSTTVRAFLQV 128
           +G + C A S  G      +L +
Sbjct: 76  SGRYDCEAASRIGGHQKSMYLDI 98

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 35.2 bits (81), Expect = 0.004
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 14/70 (20%)

Query: 55  SFQCVAEGSPLPSVFW------TQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGF 108
            F CVA G P P + W        + ++V +     YG        TL I+ V++ D G 
Sbjct: 5   EFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYG--------TLTIRDVKESDQGA 56

Query: 109 FVCSALSVAG 118
           + C A++  G
Sbjct: 57  YTCEAINTRG 66

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	292
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		100.0
KOG4221|consensus	1381		100.0
KOG4222|consensus	1281		99.97
PHA02785	326	IL-beta-binding protein; Provisional	99.97
KOG4221|consensus	1381		99.96
KOG4194|consensus	873		99.95
KOG4222|consensus	1281		99.95
KOG4194|consensus	873		99.94
PHA02785	326	IL-beta-binding protein; Provisional	99.92
PHA02826	227	IL-1 receptor-like protein; Provisional	99.84
PHA02826	227	IL-1 receptor-like protein; Provisional	99.74
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.72
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.69
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.68
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.67
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.67
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.66
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.66
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.66
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.65
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.65
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.64
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.64
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.64
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.63
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.63
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.63
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.62
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.62
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.62
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.62
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.62
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.62
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.61
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.61
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.61
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.61
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.6
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.6
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.6
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.6
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.6
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.59
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.59
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.59
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.59
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.59
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.59
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.59
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.59
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.59
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.58
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.58
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.58
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.58
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.58
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.58
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.58
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.58
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.57
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.57
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.57
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.57
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.57
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.57
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.57
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.57
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.57
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.57
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.56
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.56
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.56
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.56
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.56
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.56
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.56
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.55
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.55
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.55
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.55
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.55
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.55
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.54
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.54
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.54
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.54
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.54
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.54
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.53
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.53
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.53
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.53
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.53
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.52
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.52
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.52
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.52
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.52
KOG3515|consensus	741		99.52
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.51
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.51
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.51
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.51
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.51
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.51
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.51
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.51
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.51
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.51
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.5
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.5
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.49
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.49
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.49
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.49
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.49
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.49
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.49
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.49
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.49
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.48
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.48
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.48
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.48
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.48
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.47
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.47
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.47
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.47
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.47
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.47
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.47
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.47
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.47
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.47
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.46
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.46
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.46
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.46
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.46
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.46
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.46
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.46
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.46
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.46
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.45
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.45
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.45
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.45
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.45
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.45
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.44
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.44
KOG3515|consensus	741		99.43
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.43
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.43
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.42
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.42
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.41
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.4
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.4
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.39
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.39
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.38
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.37
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.37
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.37
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.37
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.37
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.37
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.37
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.36
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.36
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.32
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.32
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.3
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.3
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.3
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.3
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.29
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.29
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.29
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.29
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.28
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.27
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.26
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.26
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.26
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.25
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.24
PHA03376	221	BARF1; Provisional	99.24
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.24
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.23
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.23
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.23
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.23
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.18
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.16
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.16
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.14
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.13
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	99.12
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.12
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.12
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.11
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.08
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.08
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.07
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.07
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.06
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	99.05
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	99.04
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.04
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.03
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.02
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.01
smart00409	86	IG Immunoglobulin.	99.01
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.01
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	99.01
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.97
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.97
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.94
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.93
smart00409	86	IG Immunoglobulin.	98.92
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.92
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.91
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.9
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.89
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.88
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.88
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.85
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.84
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.84
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.83
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.81
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.8
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.8
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.77
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.77
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.76
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.76
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.75
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.75
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.74
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.73
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.72
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.7
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.7
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.7
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.66
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.65
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.64
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.64
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.63
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.62
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.61
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.6
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.57
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.57
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.56
PHA03376	221	BARF1; Provisional	98.56
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.54
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.53
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.53
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.52
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.5
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.48
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.48
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.47
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.47
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.47
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.46
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.46
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.45
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.45
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.45
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.42
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.41
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.41
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.41
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.39
PHA03270	466	envelope glycoprotein C; Provisional	98.36
PHA03269	566	envelope glycoprotein C; Provisional	98.36
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.35
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.34
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.33
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.32
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.32
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.31
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.31
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.3
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.3
smart00407	75	IGc1 Immunoglobulin C-Type.	98.3
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.3
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.27
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.27
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	98.25
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.25
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.23
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.23
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.23
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	98.22
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.22
PHA03270	466	envelope glycoprotein C; Provisional	98.21
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	98.21
PHA03273	486	envelope glycoprotein C; Provisional	98.2
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	98.2
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.2
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.2
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.2
cd05770	93	IgC_beta2m Class I major histocompatibility comple	98.18
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.18
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.17
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	98.17
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.17
smart00407	75	IGc1 Immunoglobulin C-Type.	98.17
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	98.17
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.17
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.16
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.16
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.15
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.13
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.1
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	98.1
PHA03273	486	envelope glycoprotein C; Provisional	98.09
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.08
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	98.07
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	98.07
PHA03269	566	envelope glycoprotein C; Provisional	98.07
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.06
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.05
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.04
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	98.04
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.04
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	98.04
cd05770	93	IgC_beta2m Class I major histocompatibility comple	98.02
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.01
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	98.01
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.0
PHA03271	490	envelope glycoprotein C; Provisional	97.99
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.99
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.98
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.95
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.94
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.93
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.93
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.91
smart00406	81	IGv Immunoglobulin V-Type.	97.88
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.86
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.84
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.83
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.83
KOG1480|consensus	909		97.83
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.81
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.8
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.8
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.79
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.77
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.77
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	97.75
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.7
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.65
PHA02633	63	hypothetical protein; Provisional	97.64
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.61
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.61
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.6
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	97.5
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	97.48
PHA02633	63	hypothetical protein; Provisional	97.38
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.35
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.32
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.32
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.31
smart00406	81	IGv Immunoglobulin V-Type.	97.25
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	97.21
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	97.19
PHA03271	490	envelope glycoprotein C; Provisional	96.87
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	96.81
PHA02982	251	hypothetical protein; Provisional	96.81
KOG4597|consensus	560		96.75
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.73
KOG0613|consensus	1205		96.37
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	96.14
PHA03042	286	CD47-like protein; Provisional	96.05
PHA02914	500	Immunoglobulin-like domain protein; Provisional	95.52
PHA03042	286	CD47-like protein; Provisional	95.49
PHA02982	251	hypothetical protein; Provisional	95.47
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	95.46
KOG1480|consensus	909		95.28
PHA03052	69	Hypothetical protein; Provisional	95.2
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	94.59
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	94.55
PHA02914	500	Immunoglobulin-like domain protein; Provisional	94.45
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	94.21
KOG4597|consensus	560		94.2
PHA02865	338	MHC-like TNF binding protein; Provisional	93.69
PHA02865	338	MHC-like TNF binding protein; Provisional	93.28
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	92.74
KOG0613|consensus	1205		92.66
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	92.59
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	91.78
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	91.27
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	91.11
PHA03052	69	Hypothetical protein; Provisional	89.57
PHA03189	348	UL14 tegument protein; Provisional	89.15
PF00801	69	PKD: PKD domain; InterPro: IPR000601 The PKD (Poly	88.6
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	88.42
PHA03282	540	envelope glycoprotein E; Provisional	83.73
PHA03112	141	IL-18 binding protein; Provisional	82.94
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	81.47

>KOG3513|consensus

Probab=100.00  E-value=1.5e-39  Score=272.16  Aligned_cols=276  Identities=26%  Similarity=0.474  Sum_probs=224.6

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeecc
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFP   81 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~   81 (292)
                      |.+++.+|+|.|+|.++|..|..... +.|.|.++|.+...+....+..|++++|.|.+.|.|.|.|.|++++..+.  .
T Consensus       298 I~nv~~~D~G~Y~C~AeN~~G~~~~~-~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~--~  374 (1051)
T KOG3513|consen  298 IPNVQYEDAGEYECIAENSRGSATHS-GHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLE--P  374 (1051)
T ss_pred             ecccCcCCCeEEEEEEecccccceee-EEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecC--c
Confidence            78999999999999999999965555 99999999999999999999999999999999999999999999998874  2


Q ss_pred             CCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCc--eecCCCeEEEEeE
Q psy15128         82 GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQ--TLPLHSVAFLPCQ  159 (292)
Q Consensus        82 ~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~--~~~~g~~v~l~C~  159 (292)
                      .....+. ....+.|+|.+++..|+|.|.|.|+|..|....++.|.|...    +|.+...+...  .+..|..+.|.|.
T Consensus       375 ~~r~~~~-~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~----~P~f~~~p~~~~~~a~~g~~v~i~C~  449 (1051)
T KOG3513|consen  375 AERDPRY-KIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLAS----APVFPLNPVERKVMAVVGGTVTIDCK  449 (1051)
T ss_pred             cCCCcce-EEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEcc----CCCCCCCccceEEEEEeCCeEEEeec
Confidence            2222223 334679999999999999999999999999999999998752    44454444433  5678999999999


Q ss_pred             eccCCCCceEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCC-----------------------------CCcceEE
Q psy15128        160 AVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRA-----------------------------EPKDTRV  210 (292)
Q Consensus       160 ~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g-----------------------------~~~~~~~  210 (292)
                      ..+.|.|.+.|.+++.. .....++.+..+|+|.|.+++.+|+|                             .+....+
T Consensus       450 ~~asP~p~~~W~k~~~~-~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v  528 (1051)
T KOG3513|consen  450 PFASPKPKVSWLKGGEK-LLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDV  528 (1051)
T ss_pred             cCCCCcceEEEEcCCcc-cccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhh
Confidence            99999999999999884 34458899999999999999999999                             3356667


Q ss_pred             eCCCceEEEeeCCC-CCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccc
Q psy15128        211 ASGETALLECGPPK-GQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       211 ~~g~~~~l~C~~~~-~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  289 (292)
                      ..|+.++|.|.+.. ....+.|.|.+||+.+............++.    ....|.|..++..|+|.|.|+|+-...+.+
T Consensus       529 ~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~----~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s  604 (1051)
T KOG3513|consen  529 KVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGS----DSGRLTIANVSLEDSGKYTCVAQTALDSAS  604 (1051)
T ss_pred             ccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCc----CccceEEEeeccccCceEEEEEEEeecchh
Confidence            89999999999842 2446689999999988644433322222221    113588999999999999999998776654


Q ss_pred             c
Q psy15128        290 H  290 (292)
Q Consensus       290 ~  290 (292)
                      .
T Consensus       605 ~  605 (1051)
T KOG3513|consen  605 A  605 (1051)
T ss_pred             c
Confidence            3

>KOG3513|consensus

Probab=100.00  E-value=1e-36  Score=255.40  Aligned_cols=268  Identities=25%  Similarity=0.422  Sum_probs=214.3

Q ss_pred             cccCCcCCCeeEEEEEEeccccc--ccccEEEEEe-------CCCcEEeC-CCccEEecCCcEEEEEEEeeeCCCeeEEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGER--ETKPALLTVH-------APPSFVVR-PQDQKVGLNGIASFQCVAEGSPLPSVFWT   71 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~--~~~~~~l~v~-------~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~v~W~   71 (292)
                      +.+|..+|.+.|.|.+.+..-..  ....+.|.+.       .+|.+... +.......|+.+.|.|.+.|.|.|.+.|+
T Consensus       197 fs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~  276 (1051)
T KOG3513|consen  197 FSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWR  276 (1051)
T ss_pred             EeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEE
Confidence            56899999999999999743221  2222666662       34555543 34667888999999999999999999999


Q ss_pred             ECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCC
Q psy15128         72 QEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLH  151 (292)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g  151 (292)
                      |.+....     ............|.|.+++.+|+|.|.|.|.|..|.......+.+..     +|.....+....+-.|
T Consensus       277 k~~g~~~-----~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a-----~P~w~~~~~d~~~~~g  346 (1051)
T KOG3513|consen  277 KVDGKPP-----PRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYA-----PPYWLQKPQDTEADTG  346 (1051)
T ss_pred             eCCCCCC-----CcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEec-----CchhhcccceeEecCC
Confidence            9876421     11112223456899999999999999999999999877777777764     6677778888889999


Q ss_pred             CeEEEEeEeccCCCCceEEEeCCeeCCCCCc-cEEEcCCCcEEEEeeecCCCCCC-------------------------
Q psy15128        152 SVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT-RINVSSSGSLQIDVLRDDFRAEP-------------------------  205 (292)
Q Consensus       152 ~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~-~~~~~~~~~l~i~~~~~~d~g~~-------------------------  205 (292)
                      +.++|.|.+.|.|.|.++|++||.++..... .-.....+.|.|.+++..|+|.|                         
T Consensus       347 s~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~  426 (1051)
T KOG3513|consen  347 SNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPV  426 (1051)
T ss_pred             CCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCC
Confidence            9999999999999999999999999986432 11233678999999999999922                         


Q ss_pred             -------cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeE
Q psy15128        206 -------KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWK  278 (292)
Q Consensus       206 -------~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~  278 (292)
                             ....+..|..+.|.|.. .+.|.+.++|.++++.+  .++.|+.+.+++        .|.|.+++.+|+|.|+
T Consensus       427 f~~~p~~~~~~a~~g~~v~i~C~~-~asP~p~~~W~k~~~~~--~~~~r~~i~edG--------tL~I~n~t~~DaG~Yt  495 (1051)
T KOG3513|consen  427 FPLNPVERKVMAVVGGTVTIDCKP-FASPKPKVSWLKGGEKL--LQSGRIRILEDG--------TLEISNVTRSDAGKYT  495 (1051)
T ss_pred             CCCCccceEEEEEeCCeEEEeecc-CCCCcceEEEEcCCccc--ccCceEEECCCC--------cEEecccCcccCcEEE
Confidence                   23456789999999998 99999999999998844  377888887776        5889999999999999


Q ss_pred             EEEeeccccccc
Q psy15128        279 LIAKNIRNQQQH  290 (292)
Q Consensus       279 C~a~n~~g~~~~  290 (292)
                      |+|+|..|++..
T Consensus       496 C~A~N~~G~a~~  507 (1051)
T KOG3513|consen  496 CVAENKLGKAES  507 (1051)
T ss_pred             EEEEcccCccce
Confidence            999999999864

>KOG4221|consensus

Probab=100.00  E-value=2.6e-31  Score=222.92  Aligned_cols=269  Identities=26%  Similarity=0.412  Sum_probs=218.0

Q ss_pred             CcCCCeeEEEEEEec-ccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCC
Q psy15128          6 KKSDEGKYQCYVQNM-VGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNA   84 (292)
Q Consensus         6 ~~~D~G~Y~C~~~~~-~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~   84 (292)
                      ...|+|.|+|.+.-. .|...+..+.|.+...+.+...+.+..+..|+++.|.|.+.+.|.+.+.|.++...+.     .
T Consensus       109 ~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~-----~  183 (1381)
T KOG4221|consen  109 NKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLP-----L  183 (1381)
T ss_pred             ccccCceEEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCccCceeEEeccccccc-----C
Confidence            347999999999866 5666666688999999999999999999999999999999998888999999987653     2


Q ss_pred             cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC-eeEEEEEEEEe-ecCCCCCeEEeCCCCceecCCCeEEEEeEecc
Q psy15128         85 YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS-TTVRAFLQVTS-VEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVG  162 (292)
Q Consensus        85 ~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~-~~~~~~l~v~~-~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~  162 (292)
                      ..+.-...++.|.|..++..|.|.|+|.+.+.... .+..+.|++.. ........+...|....+..|+.+.|.|.+.+
T Consensus       184 ~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~  263 (1381)
T KOG4221|consen  184 DSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSG  263 (1381)
T ss_pred             CCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecC
Confidence            23566677889999999999999999999975433 23445666652 11122334566677888899999999999999


Q ss_pred             CCCCceEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCC-----------------------------CCcceEEeCC
Q psy15128        163 SPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRA-----------------------------EPKDTRVASG  213 (292)
Q Consensus       163 ~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g-----------------------------~~~~~~~~~g  213 (292)
                      .|.|.|.|.+|+..+.....++.....+.|.|.+++.+|+|                             .+....+.++
T Consensus       264 ~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~  343 (1381)
T KOG4221|consen  264 VPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHES  343 (1381)
T ss_pred             CCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeec
Confidence            99999999999999987666777777789999999999999                             3356677889


Q ss_pred             CceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        214 ETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       214 ~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      .++.|+|.+ .+.|.+.+.|+|||..+..  +..+.+..++        .|.|..+-..|+|.|.|+|+|.+|.+..
T Consensus       344 ~die~ec~~-~g~p~p~v~w~kNgd~~ip--sdy~ki~~~~--------~lrIlgi~~sdeg~yQcvaen~~G~a~a  409 (1381)
T KOG4221|consen  344 MDIEFECPV-SGKPIPTVRWYKNGDRIIP--SDYFKIVGGG--------NLRILGIVKSDEGFYQCVAENDAGSAQA  409 (1381)
T ss_pred             cceeEeCCC-CCCCcceEEEEecCcccCc--ccceEecCCC--------CcEEEEEecccchhhhhhhccCcccccc
Confidence            999999998 8889999999999988863  4555555553        2667777888999999999999998754

>KOG4222|consensus

Probab=99.97  E-value=2e-31  Score=222.33  Aligned_cols=270  Identities=32%  Similarity=0.573  Sum_probs=224.8

Q ss_pred             CcccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeec
Q psy15128          1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMF   80 (292)
Q Consensus         1 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~   80 (292)
                      +|.|++.+|+|+|.|.+.|..|...+....|.|..+|.+...+....+..|..+.+.|.+.|.|.+.+.|.+++..+.  
T Consensus       190 lIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P--  267 (1281)
T KOG4222|consen  190 LISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLP--  267 (1281)
T ss_pred             EEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCC--
Confidence            589999999999999999999999888899999999999999999999999999999999999999999999776553  


Q ss_pred             cCCCcceeEE-eeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeE
Q psy15128         81 PGNAYGHLHV-TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQ  159 (292)
Q Consensus        81 ~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~  159 (292)
                          ..+... ....+|.|.+++..|.|.|.|.+.|..|.......++|.+     +|.+...+....+..|..++|.|.
T Consensus       268 ----~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~a-----pP~f~kkp~dq~v~lg~~vt~pc~  338 (1281)
T KOG4222|consen  268 ----RSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQA-----PPSFGKKPRDQKVALGGTVTFPCE  338 (1281)
T ss_pred             ----ccceeeeeccccccccccCCCcccceeeeccccccccccccceEEec-----CcccccccCccccccCceEEeeee
Confidence                122222 2336899999999999999999999999999999999875     777777788888899999999999


Q ss_pred             eccCCCCceEEEeCCeeCCC-------CCccEEEcCCCcEEEEeeecCCCC-----------------------------
Q psy15128        160 AVGSPPPHIRWYKNGNSLPP-------EDTRINVSSSGSLQIDVLRDDFRA-----------------------------  203 (292)
Q Consensus       160 ~~~~p~~~~~W~~~~~~l~~-------~~~~~~~~~~~~l~i~~~~~~d~g-----------------------------  203 (292)
                      +.++|+|.+.|.++|..-.-       ...+..+...++|.|.+++..|.|                             
T Consensus       339 ~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~r  418 (1281)
T KOG4222|consen  339 TLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSR  418 (1281)
T ss_pred             cCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCC
Confidence            99999999999997653211       124556677789999999999999                             


Q ss_pred             -------CCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccce
Q psy15128        204 -------EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQ  276 (292)
Q Consensus       204 -------~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~  276 (292)
                             .+.+.+..++..+.|.|.+ .+.|.+.+.|.++|-.+...+ .+..+.        ...+|.|......|.|.
T Consensus       419 Ppp~i~~g~~nQtl~v~s~a~l~c~a-tg~P~p~i~wl~dg~~v~~~d-~~~s~~--------~~~~l~i~dl~~~DtG~  488 (1281)
T KOG4222|consen  419 PPPIIEQGPANQTLPVGSTASLPCSA-TGAPTPNISWLKDGCNVMNPD-SRISQQ--------EIGSLRIRDLKGPDTGR  488 (1281)
T ss_pred             CCceeeecccccccccCcccccChhh-hCCCCCCchhhhcccccccCC-ccccee--------eeceeeeeeeecCCCcc
Confidence                   1244556678899999998 899999999999987664222 333222        22368899999999999


Q ss_pred             eEEEEeecccccccC
Q psy15128        277 WKLIAKNIRNQQQHG  291 (292)
Q Consensus       277 y~C~a~n~~g~~~~~  291 (292)
                      |+|+|.++.|+.+.+
T Consensus       489 YTc~as~~~ges~wS  503 (1281)
T KOG4222|consen  489 YTCIASDESGESTWS  503 (1281)
T ss_pred             eeeeccCcccccccc
Confidence            999999999987643

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.97  E-value=3.4e-29  Score=194.74  Aligned_cols=232  Identities=14%  Similarity=0.244  Sum_probs=162.1

Q ss_pred             ccEEecCCcEEEEEEE-----eeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         45 DQKVGLNGIASFQCVA-----EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      ...+.+|+.+.|.|.+     .|.|.+.+.|+|++....       ..........|.|.++..+|+|.|+|.+.|..+.
T Consensus        35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~-------~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~  107 (326)
T PHA02785         35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRGADND-------RIIPIDNGSNMLILNPTQSDSGIYICITKNETYC  107 (326)
T ss_pred             hhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc-------eEEEccCCceEEEcccCcccCeEEEEEEECCCcc
Confidence            3456679999999986     577888999999874321       1112223345889999999999999999999887


Q ss_pred             eeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEe-----ccCCCCceEEEeCCeeCCCCCccEEEcCCCcEEE
Q psy15128        120 TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA-----VGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI  194 (292)
Q Consensus       120 ~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~-----~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i  194 (292)
                      ....+.|.|....   ++.+...+....+.+|..+.|.|..     .+.|++.+.|++++ .+.  ..++....++.|.|
T Consensus       108 ~~~s~~L~V~~~~---~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~-~~~--~~r~~~~~~~~L~i  181 (326)
T PHA02785        108 DMMSLNLTIVSVS---ESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR-RLR--NKRLKQRTPGIITI  181 (326)
T ss_pred             eEEEEEEEEEecC---CCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCC-ccC--CcceEecCCCeEEE
Confidence            7777777775432   1222222333446789999999972     35688899999864 232  24454555678999


Q ss_pred             EeeecCCCCCC-----------------------------------cceEEeCCCceEEEeeCCCCCCC---CeEEEeEc
Q psy15128        195 DVLRDDFRAEP-----------------------------------KDTRVASGETALLECGPPKGQPE---PTLHWKKN  236 (292)
Q Consensus       195 ~~~~~~d~g~~-----------------------------------~~~~~~~g~~~~l~C~~~~~~p~---~~~~W~~~  236 (292)
                      .++..+|+|.|                                   ....+..|+.++|.|.| .+.|.   +.+.|++|
T Consensus       182 ~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a-~g~P~~~~~~v~W~kn  260 (326)
T PHA02785        182 EDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRV-SLRPPTTDADVFWISN  260 (326)
T ss_pred             eecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEE-ECCCCCCCceEEEEEC
Confidence            99999999922                                   22234569999999999 66665   48999999


Q ss_pred             CeEeccCC---CceEEecCCCcc---ccccccccccccccccccceeEEEEeeccccccc
Q psy15128        237 GQFIDLES---SKRVSILGDPWF---DSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       237 g~~~~~~~---~~~~~~~~~~~~---~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      |+.|....   ..++......+.   .......|.|..+..+|+|.|+|+|.|..|....
T Consensus       261 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~~  320 (326)
T PHA02785        261 GMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISKT  320 (326)
T ss_pred             CEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceEe
Confidence            99885322   123333322111   0112347999999999999999999999976654

>KOG4221|consensus

Probab=99.96  E-value=1.6e-27  Score=200.40  Aligned_cols=192  Identities=27%  Similarity=0.477  Sum_probs=157.9

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCC------cEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCe
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP------SFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGS   75 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~   75 (292)
                      |.++++.|.|.|+|.+.+......+..+.|.|..-|      .+...+....+..|+++.|.|.+.+.|.|.|.|.|++.
T Consensus       197 I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~  276 (1381)
T KOG4221|consen  197 ISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGE  276 (1381)
T ss_pred             ecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCe
Confidence            789999999999999999877766776899998433      24567788889999999999999999999999999998


Q ss_pred             EEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEE
Q psy15128         76 QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAF  155 (292)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~  155 (292)
                      .+....    .+......+.|.|.+++..|+|.|+|+|.|........+.+.|..     +|.+...|......++..+.
T Consensus       277 ~i~~ds----~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a-----~P~~~~~p~~l~A~e~~die  347 (1381)
T KOG4221|consen  277 KISVDS----YRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLA-----PPGFTKAPTTLVAHESMDIE  347 (1381)
T ss_pred             eeeecc----eEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEc-----CCCCCCCCcceeeeecccee
Confidence            875332    344455567899999999999999999998655556667777764     57777788888888999999


Q ss_pred             EEeEeccCCCCceEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCC
Q psy15128        156 LPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRA  203 (292)
Q Consensus       156 l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g  203 (292)
                      |.|.+.+.|.|.+.|+|+|..+.+. ..+++..++.|+|.-+-..|+|
T Consensus       348 ~ec~~~g~p~p~v~w~kNgd~~ips-dy~ki~~~~~lrIlgi~~sdeg  394 (1381)
T KOG4221|consen  348 FECPVSGKPIPTVRWYKNGDRIIPS-DYFKIVGGGNLRILGIVKSDEG  394 (1381)
T ss_pred             EeCCCCCCCcceEEEEecCcccCcc-cceEecCCCCcEEEEEecccch
Confidence            9999999999999999999988773 5566666666888777777776

>KOG4194|consensus

Probab=99.95  E-value=1.5e-27  Score=188.15  Aligned_cols=199  Identities=28%  Similarity=0.509  Sum_probs=165.4

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeecc
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFP   81 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~   81 (292)
                      +.||+-.|+|.|+|.+.|..|...+..++|+|...|.+...|.+..+..|+.+.|.|.+.|.|.|.|.|.|+|..-  ++
T Consensus       578 L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtd--FP  655 (873)
T KOG4194|consen  578 LDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTD--FP  655 (873)
T ss_pred             eeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCC--Cc
Confidence            5689999999999999999999988889999999999999999999999999999999999999999999987641  12


Q ss_pred             CCCcceeEEe-eecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEe
Q psy15128         82 GNAYGHLHVT-QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA  160 (292)
Q Consensus        82 ~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~  160 (292)
                      .....+.... .+..+.|.+++.+|.|.|+|.|.|..|..+.++++.|..     .|.+..+.....+..|+++.|.|.+
T Consensus       656 AA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e-----~p~f~~PL~~~~V~~get~vlqC~a  730 (873)
T KOG4194|consen  656 AARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE-----TPSFSIPLEDQLVVVGETLVLQCLA  730 (873)
T ss_pred             hhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEec-----CCcccccccceEEEecceEEEEEec
Confidence            2222233332 355899999999999999999999999999999999875     5555566677889999999999999


Q ss_pred             ccCCC-CceEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCCCCcc
Q psy15128        161 VGSPP-PHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEPKD  207 (292)
Q Consensus       161 ~~~p~-~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g~~~~  207 (292)
                      .+.|. |++.|+|+++++.-.........+.-|.+.+...+|+|.|..
T Consensus       731 ~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTc  778 (873)
T KOG4194|consen  731 EGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTC  778 (873)
T ss_pred             CCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEE
Confidence            98877 999999999887654333333344467888888999997753

>KOG4222|consensus

Probab=99.95  E-value=5.6e-27  Score=196.14  Aligned_cols=267  Identities=25%  Similarity=0.440  Sum_probs=209.0

Q ss_pred             CCeeEEEEEEecccccccccEEEEEeC-CCcEEeCCCccEEecCCcEEEEEEE-eeeCCCeeEEEECCeEEeeccCCCcc
Q psy15128          9 DEGKYQCYVQNMVGERETKPALLTVHA-PPSFVVRPQDQKVGLNGIASFQCVA-EGSPLPSVFWTQEGSQVLMFPGNAYG   86 (292)
Q Consensus         9 D~G~Y~C~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~   86 (292)
                      |.|.|+|.+.|..|...+....|.+.. +..+-+.+....+..|+.+.|.|.- .+.|.+.+.|.|+++.+..   ....
T Consensus       103 d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~---~~~~  179 (1281)
T KOG4222|consen  103 DHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDH---YDVP  179 (1281)
T ss_pred             CCceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCcccc---ccce
Confidence            999999999999998887777777764 3346667778888899999999954 5678999999999987742   2233


Q ss_pred             eeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe-eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCC
Q psy15128         87 HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPP  165 (292)
Q Consensus        87 ~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~  165 (292)
                      +......+.|.|.++...|.|.|.|.+.|..|.. +..+.+.|.+     .|.+...+....+..|..+.+.|.+.|.|.
T Consensus       180 ~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e-----~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~  254 (1281)
T KOG4222|consen  180 IIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQE-----KPWFWKRPKDLAVLVGAAAEFDCRVGGDPQ  254 (1281)
T ss_pred             eEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeecc-----CCccccccccceeecccccccccccCCCCC
Confidence            4556678899999999999999999999988865 3456677764     778888888899999999999999999999


Q ss_pred             CceEEEeCCeeCCCCCccEEEcCC-CcEEEEeeecCCCC-----------------------------CCcceEEeCCCc
Q psy15128        166 PHIRWYKNGNSLPPEDTRINVSSS-GSLQIDVLRDDFRA-----------------------------EPKDTRVASGET  215 (292)
Q Consensus       166 ~~~~W~~~~~~l~~~~~~~~~~~~-~~l~i~~~~~~d~g-----------------------------~~~~~~~~~g~~  215 (292)
                      |++.|.+++-.++..  +..+..+ .+|.|.+++..|+|                             .+.+..+..|..
T Consensus       255 P~Vrwkk~~~~~P~~--ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~  332 (1281)
T KOG4222|consen  255 PTVRWKKDDPSLPRS--RYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGT  332 (1281)
T ss_pred             CceeeeccCCCCCcc--ceeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCce
Confidence            999999988777763  3444444 68999999988888                             335666778899


Q ss_pred             eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128        216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      ++|.|.+ .+.|++.+.|.+.|.........  -...++...+..+..|.|.++...|.|-|.|-+.+.+|+.
T Consensus       333 vt~pc~~-~gnP~PavfW~keg~q~llf~~~--p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss  402 (1281)
T KOG4222|consen  333 VTFPCET-LGNPPPAVFWLKEGSQDLLFSAS--PPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSS  402 (1281)
T ss_pred             EEeeeec-CCCCCcceEEeccCcceecccCC--CCCcCccceecCCCCcccccccccccceEeeccccccccc
Confidence            9999998 99999999999987543111100  0112222233333479999999999999999998888765

>KOG4194|consensus

Probab=99.94  E-value=6.2e-26  Score=179.08  Aligned_cols=238  Identities=23%  Similarity=0.356  Sum_probs=177.4

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeee--CCCeeEEEECCeEEeeccCCCcce-----------eEEeeecEEEEccCC
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGS--PLPSVFWTQEGSQVLMFPGNAYGH-----------LHVTQEGTLRIQGVQ  102 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~i~~~~  102 (292)
                      .|++...|.......|++++|+|.+.+.  .+-.+.|.+++.............           ......+.|.+.+++
T Consensus       503 kpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt  582 (873)
T KOG4194|consen  503 KPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVT  582 (873)
T ss_pred             CcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeee
Confidence            5677778888888899999999998763  344899999876332111111000           011122369999999


Q ss_pred             CCCCeEEEEEEEeCCcCe-eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCee-CCCC
Q psy15128        103 KEDAGFFVCSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNS-LPPE  180 (292)
Q Consensus       103 ~~d~g~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~-l~~~  180 (292)
                      ..|.|.|.|.++|..|.. ...+.++|..     .|.+...|.+..+..|+.+.|.|.+.|.|.|++.|.|+|.. .+..
T Consensus       583 ~td~grYQCVvtN~FGStysqk~KltV~~-----~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA  657 (873)
T KOG4194|consen  583 FTDEGRYQCVVTNHFGSTYSQKAKLTVNQ-----APSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAA  657 (873)
T ss_pred             cccCceEEEEEecccCcchhheeEEEeec-----cCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchh
Confidence            999999999999998875 3456677654     77888889999999999999999999999999999998776 3322


Q ss_pred             -CccEEEc-CCCcEEEEeeecCCCCC-----------------------------CcceEEeCCCceEEEeeCCCCCCC-
Q psy15128        181 -DTRINVS-SSGSLQIDVLRDDFRAE-----------------------------PKDTRVASGETALLECGPPKGQPE-  228 (292)
Q Consensus       181 -~~~~~~~-~~~~l~i~~~~~~d~g~-----------------------------~~~~~~~~g~~~~l~C~~~~~~p~-  228 (292)
                       ..++.+. .+..+.|.++..+|+|.                             ..+..+..|+.+.|.|.+ .+.|+ 
T Consensus       658 ~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a-~~~~a~  736 (873)
T KOG4194|consen  658 RERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLA-EGAPAD  736 (873)
T ss_pred             hhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEec-CCCCCC
Confidence             2344433 45689999999999992                             256788899999999998 67666 


Q ss_pred             CeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128        229 PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       229 ~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      |.+.|+|+.++|...+..  .+.++.       ..|.+.....+|+|.|+|...|..|..
T Consensus       737 pr~~W~k~d~pil~t~rh--~f~d~d-------Qllvv~~~~~~daG~yTcem~~~~~~~  787 (873)
T KOG4194|consen  737 PRLEWFKEDKPILITERH--TFPDGD-------QLLVVKENLVEDAGIYTCEMSNTLGTE  787 (873)
T ss_pred             ccccccCCCCceEEeecc--cCCCCC-------eEEEEEehhhhhcceEEEEEEeeccce
Confidence            999999999988533222  222221       246666777999999999999998864

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.92  E-value=3.8e-23  Score=161.01  Aligned_cols=198  Identities=20%  Similarity=0.345  Sum_probs=135.4

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCC--CcEEeCCCccEEecCCcEEEEEE-----EeeeCCCeeEEEECC
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAP--PSFVVRPQDQKVGLNGIASFQCV-----AEGSPLPSVFWTQEG   74 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~--p~~~~~~~~~~~~~g~~~~l~C~-----~~~~~~~~v~W~~~~   74 (292)
                      |.++..+|+|.|+|.++|..+..... +.|.|...  +.+...+.+..+.+|..+.|.|.     ..+.|.+.+.|+++.
T Consensus        86 i~~~~~~DsG~Y~C~a~N~~g~~~~s-~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~  164 (326)
T PHA02785         86 ILNPTQSDSGIYICITKNETYCDMMS-LNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR  164 (326)
T ss_pred             EcccCcccCeEEEEEEECCCcceEEE-EEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCC
Confidence            56788999999999999988776655 77777543  22322334455778999999996     235678899998754


Q ss_pred             eEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEE--EEEEEeecCCCCCeEEeCCCCceecCCC
Q psy15128         75 SQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA--FLQVTSVEDTPPPIVQVGPSNQTLPLHS  152 (292)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~--~l~v~~~~~~~~~~~~~~~~~~~~~~g~  152 (292)
                      . +      ...+.....++.|.|.+++.+|.|.|+|.+.+..+......  .+.+.+.....+|.+ ..|....+..|+
T Consensus       165 ~-~------~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~G~  236 (326)
T PHA02785        165 R-L------RNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QLPEGVVTSIGS  236 (326)
T ss_pred             c-c------CCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-cCCCcEEecCCC
Confidence            2 1      11233333456899999999999999999999877654332  222222222223333 345666778899


Q ss_pred             eEEEEeEeccCCCC---ceEEEeCCeeCCCCC----ccEEEc-----------CCCcEEEEeeecCCCCCCcce
Q psy15128        153 VAFLPCQAVGSPPP---HIRWYKNGNSLPPED----TRINVS-----------SSGSLQIDVLRDDFRAEPKDT  208 (292)
Q Consensus       153 ~v~l~C~~~~~p~~---~~~W~~~~~~l~~~~----~~~~~~-----------~~~~l~i~~~~~~d~g~~~~~  208 (292)
                      .++|.|.+.+.|.+   .+.|++||..+...+    .++...           ..+.|.|.++..+|.|.|...
T Consensus       237 ~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~  310 (326)
T PHA02785        237 NLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCM  310 (326)
T ss_pred             cEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEE
Confidence            99999999988764   799999999885422    121111           124689999999998866443

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.84  E-value=1.8e-19  Score=132.04  Aligned_cols=150  Identities=19%  Similarity=0.208  Sum_probs=106.5

Q ss_pred             CccEEecCCcEEEEEEEeeeC-----------CCeeEEEECCeEEeecc-CCCc------ceeEEeeecEEEEccCCCCC
Q psy15128         44 QDQKVGLNGIASFQCVAEGSP-----------LPSVFWTQEGSQVLMFP-GNAY------GHLHVTQEGTLRIQGVQKED  105 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~~-----------~~~v~W~~~~~~~~~~~-~~~~------~~~~~~~~~~l~i~~~~~~d  105 (292)
                      ....+.+|+++.|.|.+.+.+           .+++.|+|++....... +...      ..........|.|.+++.+|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            456788999999999986643           34899999876432211 1100      01111235689999999999


Q ss_pred             CeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEecc-----CCCCceEEEeCCeeCCCC
Q psy15128        106 AGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVG-----SPPPHIRWYKNGNSLPPE  180 (292)
Q Consensus       106 ~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-----~p~~~~~W~~~~~~l~~~  180 (292)
                      +|.|+|.+.|..+.....+.|.|..     +      +....+..|+.+.|.|.+.+     .|.|.+.|+|++.++...
T Consensus       110 sG~Y~C~a~N~~~~~~~~i~L~V~~-----~------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~  178 (227)
T PHA02826        110 EGIYICTISSGNICEESTIRLTFDS-----G------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYT  178 (227)
T ss_pred             CEEEEEEEEECCcceEEEEEEEEec-----C------CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCC
Confidence            9999999999877766666665531     1      12334678999999999852     457899999999998754


Q ss_pred             CccEEEcC-CCcEEEEeeecCCCCCC
Q psy15128        181 DTRINVSS-SGSLQIDVLRDDFRAEP  205 (292)
Q Consensus       181 ~~~~~~~~-~~~l~i~~~~~~d~g~~  205 (292)
                       .++.... .+.|.|.++..+|+|.|
T Consensus       179 -~r~~~~~~~~~L~I~~V~~~DsG~Y  203 (227)
T PHA02826        179 -DRIQLRNNNSTLVIKSATHDDSGIY  203 (227)
T ss_pred             -CCEEEeCCCCEEEECcCCHHhCEEE
Confidence             3444443 45799999999999954

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.74  E-value=9.9e-17  Score=117.67  Aligned_cols=104  Identities=20%  Similarity=0.328  Sum_probs=79.6

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEee-----eCCCeeEEEECCeE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEG-----SPLPSVFWTQEGSQ   76 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-----~~~~~v~W~~~~~~   76 (292)
                      |.+++.+|+|.|+|.+.|..+..... +.|.|..++      ....+.+|+.+.|.|.+.+     .|.|.++|+|++..
T Consensus       102 I~~v~~~DsG~Y~C~a~N~~~~~~~~-i~L~V~~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~  174 (227)
T PHA02826        102 IGNVINIDEGIYICTISSGNICEEST-IRLTFDSGT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNI  174 (227)
T ss_pred             ECCCChHHCEEEEEEEEECCcceEEE-EEEEEecCC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEE
Confidence            78999999999999999977665555 777775432      2446778999999998753     35789999999987


Q ss_pred             EeeccCCCcceeEEe-eecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         77 VLMFPGNAYGHLHVT-QEGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        77 ~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      +...     .+.... ..+.|.|.+++.+|+|.|+|.++...
T Consensus       175 l~~~-----~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        175 VLYT-----DRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             CCCC-----CCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence            6311     123222 34589999999999999999998653

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.72  E-value=3.1e-16  Score=100.08  Aligned_cols=93  Identities=20%  Similarity=0.298  Sum_probs=75.2

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeC
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                      |.+...+....+..|+.+.|.|.+.|.|.+.+.|+|++..+.  .+...........+.|.|.++..+|+|.|+|.+.|.
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~--~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~   78 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQ--EGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENK   78 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEec--CCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcC
Confidence            456677788899999999999999999999999999998774  121211112223568999999999999999999999


Q ss_pred             CcCeeEEEEEEEEee
Q psy15128        117 AGSTTVRAFLQVTSV  131 (292)
Q Consensus       117 ~~~~~~~~~l~v~~~  131 (292)
                      .|.....+.|.|.+.
T Consensus        79 ~G~~~~~~~l~V~~~   93 (98)
T cd05762          79 LGSRQAQVNLTVVDK   93 (98)
T ss_pred             CCceeEEEEEEEecC
Confidence            999999888888753

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.69  E-value=5.4e-16  Score=97.08  Aligned_cols=87  Identities=23%  Similarity=0.401  Sum_probs=71.4

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      +|.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|++..+..     ..+. ...++.|.|.+++.+|+|.|+|.|.|
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~-----~~~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N   74 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPA-----TAEI-SMSGAVLKIFNIQPEDEGTYECEAEN   74 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCC-----CCEE-ecCCCEEEECcCChhhCEEEEEEEEc
Confidence            47778888889999999999999999999999999999865421     1112 12345899999999999999999999


Q ss_pred             CCcCeeEEEEEEE
Q psy15128        116 VAGSTTVRAFLQV  128 (292)
Q Consensus       116 ~~~~~~~~~~l~v  128 (292)
                      ..|.....+.|.|
T Consensus        75 ~~G~~~~~~~l~V   87 (88)
T cd05851          75 IKGKDKHQARVYV   87 (88)
T ss_pred             CCCceEEEEEEEE
Confidence            9998887777665

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.68  E-value=8.9e-17  Score=102.60  Aligned_cols=83  Identities=13%  Similarity=0.167  Sum_probs=62.8

Q ss_pred             cceEEeCCCceEEEeeCCCC-CCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        206 KDTRVASGETALLECGPPKG-QPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      ....+.+|+++.|.|.+ .| .|+|.+.|+|+|.+|... ...+....+.. .......|.|..+..+|+|.|+|.|+|.
T Consensus        11 ~~~~v~~G~~v~L~c~v-~g~~P~p~v~W~Kdg~~i~~~-~~~~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Ytc~A~N~   87 (101)
T cd04975          11 TTIFVNLGENLNLVVEV-EAYPPPPHINWTYDNRTLTNK-LTEIVTSENES-EYRYVSELKLVRLKESEAGTYTFLASNS   87 (101)
T ss_pred             ceEEEECCCCEEEEEEE-EecCCCCccEEEeCCeeCCCC-cceeEEEeccC-cceEEEEEEEeecCHhhCeeEEEEEECC
Confidence            57789999999999998 78 899999999999999632 22222222100 0012246999999999999999999999


Q ss_pred             ccccccC
Q psy15128        285 RNQQQHG  291 (292)
Q Consensus       285 ~g~~~~~  291 (292)
                      .|+++.+
T Consensus        88 ~G~~~~t   94 (101)
T cd04975          88 DASKSLT   94 (101)
T ss_pred             CccEEEE
Confidence            9987753

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.67  E-value=2e-15  Score=103.50  Aligned_cols=117  Identities=18%  Similarity=0.269  Sum_probs=85.4

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeee-CC-CeeEEEECCeEEee
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGS-PL-PSVFWTQEGSQVLM   79 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~   79 (292)
                      |.+++.+|+|.|+|.+.+..+..... +.|.|..+|.+...+.......|+.++|.|.+.+. |. ..|.|++++.....
T Consensus         5 i~~v~~~D~G~Y~C~~~~~~~~~~~~-~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~   83 (139)
T cd05771           5 LPGLTVHDEGTYICSVSTPPHQAQQI-IQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSP   83 (139)
T ss_pred             ECCCCHHHCEEEEEEEEccCcceeeE-EEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCcc
Confidence            78999999999999999877776555 89999999998877766666678999999999985 54 48999998754211


Q ss_pred             ----ccCC------CcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         80 ----FPGN------AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        80 ----~~~~------~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                          ..+.      ......+...+.|.+.....++.+.|+|.+.+....
T Consensus        84 ~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l~  133 (139)
T cd05771          84 PPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSLE  133 (139)
T ss_pred             ceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCCC
Confidence                0000      011123334457888777777778999999876543

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.67  E-value=2.4e-16  Score=98.68  Aligned_cols=75  Identities=23%  Similarity=0.376  Sum_probs=60.7

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +.+..+.+|+.+.|.|.+ .|.|.|.+.|++++.++.  ...++...         ...|.|..+..+|+|.|+|.|.|.
T Consensus         8 ~~~~~~~~G~~v~l~C~~-~G~P~P~v~W~k~~~~~~--~~~~~~~~---------~~~L~I~~v~~~D~G~Y~C~A~N~   75 (88)
T cd05851           8 FKDTYALKGQNVTLECFA-LGNPVPVIRWRKILEPMP--ATAEISMS---------GAVLKIFNIQPEDEGTYECEAENI   75 (88)
T ss_pred             cccEEEeCCCcEEEEEEe-cccCCCEEEEEECCcCCC--CCCEEecC---------CCEEEECcCChhhCEEEEEEEEcC
Confidence            356778899999999998 899999999999998774  22233221         125889999999999999999999


Q ss_pred             ccccccC
Q psy15128        285 RNQQQHG  291 (292)
Q Consensus       285 ~g~~~~~  291 (292)
                      +|.++++
T Consensus        76 ~G~~~~~   82 (88)
T cd05851          76 KGKDKHQ   82 (88)
T ss_pred             CCceEEE
Confidence            9998653

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.66  E-value=3.5e-16  Score=99.08  Aligned_cols=80  Identities=21%  Similarity=0.353  Sum_probs=63.3

Q ss_pred             CCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128        204 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN  283 (292)
Q Consensus       204 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n  283 (292)
                      .|....+.+|+.+.|.|.+ .|.|.|.+.|+++|+++......++.....      ....|.|..+..+|+|.|+|.|+|
T Consensus         7 lp~~v~v~~G~~v~L~C~v-~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~------~~~~L~I~~v~~~D~G~Y~C~a~N   79 (92)
T cd05737           7 LPDVVTIMEGKTLNLTCTV-FGDPDPEVSWLKNDQALALSDHYNVKVEQG------KYASLTIKGVSSEDSGKYGIVVKN   79 (92)
T ss_pred             CCceEEEeCCCcEEEEEEE-EecCCCeEEEEECCEECccCCCEEEEEcCC------CEEEEEEccCChhhCEEEEEEEEE
Confidence            3556789999999999998 899999999999999886333323322211      112588999999999999999999


Q ss_pred             ccccccc
Q psy15128        284 IRNQQQH  290 (292)
Q Consensus       284 ~~g~~~~  290 (292)
                      ..|+++.
T Consensus        80 ~~G~~~~   86 (92)
T cd05737          80 KYGGETV   86 (92)
T ss_pred             CCCcceE
Confidence            9998864

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.66  E-value=2.6e-16  Score=94.49  Aligned_cols=68  Identities=26%  Similarity=0.534  Sum_probs=56.8

Q ss_pred             CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      |+.+.|.|.+ .|.|.|.+.|+|++..+.  .+.++.+..++        .|.|..+..+|+|.|+|.|+|..|+++.+
T Consensus         1 G~~~~l~C~~-~g~P~p~v~W~k~~~~l~--~~~r~~~~~~g--------~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   68 (73)
T cd05852           1 GGRVIIECKP-KAAPKPKFSWSKGTELLV--NNSRISIWDDG--------SLEILNITKLDEGSYTCFAENNRGKANST   68 (73)
T ss_pred             CCeEEEEEec-ceeCCCEEEEEeCCEecc--cCCCEEEcCCC--------EEEECcCChhHCEEEEEEEECCCCceeEE
Confidence            6889999998 899999999999998774  34455554432        58899999999999999999999998753

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.66  E-value=4.8e-16  Score=99.19  Aligned_cols=78  Identities=22%  Similarity=0.230  Sum_probs=63.7

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +....+..|+.+.|.|.+ .|.|++.+.|+|+|++|..  +.++.+....     ....|.|..+..+|+|.|+|.|.|.
T Consensus         7 p~~~~v~~G~~v~l~C~~-~G~p~p~v~W~kdg~~l~~--~~~~~~~~~~-----~~s~L~I~~~~~~D~G~Ytc~a~N~   78 (98)
T cd05762           7 PEDMKVRAGESVELFCKV-TGTQPITCTWMKFRKQIQE--GEGIKIENTE-----NSSKLTITEGQQEHCGCYTLEVENK   78 (98)
T ss_pred             CcCEEEECCCEEEEEEEE-cccCCCceEEEECCEEecC--CCcEEEEecC-----CeeEEEECCCChhhCEEEEEEEEcC
Confidence            456789999999999998 8999999999999999963  3344433221     2236899999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      +|++..
T Consensus        79 ~G~~~~   84 (98)
T cd05762          79 LGSRQA   84 (98)
T ss_pred             CCceeE
Confidence            999865

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.65  E-value=5.3e-16  Score=96.51  Aligned_cols=77  Identities=16%  Similarity=0.236  Sum_probs=62.5

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      .+.+.+|+.+.|.|.+ .|.|.|.+.|+++++++... ..++.+....     ....|.|..+..+|+|.|+|.|.|..|
T Consensus         4 ~~~v~~G~~v~l~c~~-~G~P~P~v~W~k~~~~i~~~-~~r~~~~~~~-----~~~~L~I~~~~~~D~G~Y~c~a~N~~G   76 (86)
T cd05894           4 TIVVVAGNKLRLDVPI-SGEPAPTVTWSRGDKAFTET-EGRVRVESYK-----DLSSFVIEGAEREDEGVYTITVTNPVG   76 (86)
T ss_pred             EEEEEcCCEEEEEeeE-eecCCCeEEEEECCEECccC-CCeEEEEEcC-----CeEEEEECCCccCcCEEEEEEEEeCCC
Confidence            5678999999999998 89999999999999998532 2344433221     123699999999999999999999999


Q ss_pred             cccc
Q psy15128        287 QQQH  290 (292)
Q Consensus       287 ~~~~  290 (292)
                      +++.
T Consensus        77 ~~~~   80 (86)
T cd05894          77 EDHA   80 (86)
T ss_pred             cEEE
Confidence            9864

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.65  E-value=3.6e-16  Score=94.76  Aligned_cols=69  Identities=25%  Similarity=0.438  Sum_probs=56.3

Q ss_pred             CCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        212 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      +|+.+.|.|.+ .|.|.|.+.|+++|.++..  ..+.....+        ..|.|..+..+|+|.|+|.|.|..|+.+.+
T Consensus         1 eG~~v~l~C~~-~g~P~p~i~W~k~g~~~~~--~~~~~~~~~--------~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   69 (74)
T cd05745           1 EGQTVDFLCEA-QGYPQPVIAWTKGGSQLSV--DRRHLVLSS--------GTLRISRVALHDQGQYECQAVNIVGSQRTV   69 (74)
T ss_pred             CCCeEEEEeEC-CEecCCEEEEEECCEECCC--CCCeEEccC--------CeEEEeeCCHHhCEEEEEEEEeCCCceeEE
Confidence            58999999998 8999999999999998852  223322222        268899999999999999999999998653

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.64  E-value=2.4e-15  Score=91.15  Aligned_cols=73  Identities=36%  Similarity=0.567  Sum_probs=60.1

Q ss_pred             cCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128         50 LNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  127 (292)
Q Consensus        50 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~  127 (292)
                      +|+.+.|.|.+.|.|.|.+.|+|++..+..     ..+......+.|.|.+++.+|+|.|+|.+.|..|.....+.|.
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~-----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~   73 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSV-----DRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLT   73 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCC-----CCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence            588999999999999999999999886531     1122334466899999999999999999999999887776664

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.64  E-value=5.6e-16  Score=99.12  Aligned_cols=83  Identities=10%  Similarity=0.050  Sum_probs=62.6

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      ...+..|+.+.|.|.+ .|+|+|.+.|+|+|++|..+. ..+...............|.|..+..+|+|.|+|.|+|..|
T Consensus        12 ~~~~~~~~~~~l~~~v-~g~P~P~v~W~kdg~~l~~~~-~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g   89 (101)
T cd05859          12 LEFANLHEVKEFVVEV-EAYPPPQIRWLKDNRTLIENL-TEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDA   89 (101)
T ss_pred             eEEEecCCcEEEEEEE-EEeCCCceEEEECCEECcCCc-ceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCc
Confidence            5678899999999998 999999999999999986322 12222111111112224699999999999999999999999


Q ss_pred             ccccC
Q psy15128        287 QQQHG  291 (292)
Q Consensus       287 ~~~~~  291 (292)
                      .++.+
T Consensus        90 ~~~~t   94 (101)
T cd05859          90 VKSYT   94 (101)
T ss_pred             eEEEE
Confidence            98653

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.64  E-value=3.6e-15  Score=89.48  Aligned_cols=73  Identities=22%  Similarity=0.479  Sum_probs=60.5

Q ss_pred             CCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128         51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  128 (292)
Q Consensus        51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v  128 (292)
                      |+.+.|.|.+.|.|.|.+.|+|++..+.  .   ..+.....++.|.|.+++.+|.|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~--~---~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLV--N---NSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecc--c---CCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            6789999999999999999999987552  1   22444455678999999999999999999999998888777653

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.63  E-value=1.5e-14  Score=90.94  Aligned_cols=87  Identities=25%  Similarity=0.460  Sum_probs=69.8

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      |+.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...     ... ....+.|.|.+++.+|+|.|+|.+.|
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~-----~~~-~~~~~~L~i~~v~~~D~G~Y~C~a~N   74 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSS-----AEI-SMSGAVLKIPNIQFEDEGTYECEAEN   74 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCc-----cEE-EEeCCEEEECCCCcccCEEEEEEEEE
Confidence            345566777888999999999999999999999999987654211     111 23467899999999999999999999


Q ss_pred             CCcCeeEEEEEEE
Q psy15128        116 VAGSTTVRAFLQV  128 (292)
Q Consensus       116 ~~~~~~~~~~l~v  128 (292)
                      ..|.....+.|.|
T Consensus        75 ~~G~~~~~~~l~V   87 (88)
T cd04968          75 IKGKDTHQGRIYV   87 (88)
T ss_pred             CCCcEEEEEEEEE
Confidence            9998877777765

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.63  E-value=8.9e-16  Score=93.29  Aligned_cols=70  Identities=23%  Similarity=0.365  Sum_probs=55.0

Q ss_pred             CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      |+.+.|.|.+ .|.|.|.|.|+++|+++............+        ..|.|..+...|+|.|+|.|+|.+|....+
T Consensus         1 g~~~~l~C~a-~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~--------~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~   70 (76)
T cd05868           1 GEDGTLICRA-NGNPKPSISWLTNGVPIEIAPTDPSRKVDG--------DTIIFSKVQERSSAVYQCNASNEYGYLLAN   70 (76)
T ss_pred             CCCEEEEEEe-eEeCCCeEEEEECCEEccccCCCceEEecC--------CEEEECCCCHhhCEEEEEEEEcCCCEEEEE
Confidence            6889999999 899999999999999985332222211111        257788899999999999999999998754

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.63  E-value=1.3e-15  Score=94.92  Aligned_cols=75  Identities=24%  Similarity=0.406  Sum_probs=62.1

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      |.+..+..|+.+.|.|.+ .|.|.|.+.|+++|.++.  ...++.....         .|.|..+..+|+|.|+|.|.|.
T Consensus         6 p~~~~~~~G~~~~l~C~~-~g~p~p~v~W~k~g~~~~--~~~~~~~~~~---------~L~i~~~~~~D~G~Y~C~a~N~   73 (85)
T cd05728           6 ISDTEADIGSSLRWECKA-SGNPRPAYRWLKNGQPLA--SENRIEVEAG---------DLRITKLSLSDSGMYQCVAENK   73 (85)
T ss_pred             CCccEEcCCCcEEEEEEe-eEeCCCEEEEEECCEECC--CCCeEEEeCC---------EEEEeeCCHHHCEEEEEEEECC
Confidence            456788999999999998 899999999999999885  3334443322         5888899999999999999999


Q ss_pred             ccccccC
Q psy15128        285 RNQQQHG  291 (292)
Q Consensus       285 ~g~~~~~  291 (292)
                      .|....+
T Consensus        74 ~G~~~~~   80 (85)
T cd05728          74 HGTIYAS   80 (85)
T ss_pred             CCeEEEE
Confidence            9987653

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.62  E-value=1.1e-14  Score=92.34  Aligned_cols=89  Identities=24%  Similarity=0.445  Sum_probs=69.4

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      +|.+...|....+.+|+.+.|.|.+.+.|.+.+.|++++..+.  .............+.|.|.++..+|+|.|+|.+.|
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~--~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   80 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIV--SSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVEN   80 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECC--CCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEc
Confidence            6777778888999999999999999999999999999987653  11111111112245899999999999999999999


Q ss_pred             CCcCeeEEEEE
Q psy15128        116 VAGSTTVRAFL  126 (292)
Q Consensus       116 ~~~~~~~~~~l  126 (292)
                      ..|.......|
T Consensus        81 ~~G~~~~~~~l   91 (92)
T cd05747          81 SEGKQEAQFTL   91 (92)
T ss_pred             CCCCEeEEEEe
Confidence            99877665544

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.62  E-value=9.4e-15  Score=90.88  Aligned_cols=82  Identities=16%  Similarity=0.285  Sum_probs=63.5

Q ss_pred             ccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEE
Q psy15128         45 DQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  124 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~  124 (292)
                      .+.+.+|+.+.|.|.+.|.|.|.+.|++++..+.... ...........+.|.|.++..+|+|.|+|.+.|..|.....+
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~-~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~   82 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETE-GRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASL   82 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCC-CeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence            4567889999999999999999999999998764221 111111112245899999999999999999999999877766


Q ss_pred             EEE
Q psy15128        125 FLQ  127 (292)
Q Consensus       125 ~l~  127 (292)
                      .|.
T Consensus        83 ~l~   85 (86)
T cd05894          83 FVK   85 (86)
T ss_pred             EEE
Confidence            654

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.62  E-value=1e-15  Score=92.16  Aligned_cols=69  Identities=19%  Similarity=0.354  Sum_probs=54.2

Q ss_pred             eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      +.|.|.+ .|.|.|.+.|+|+|+++... ..++.+..++.    ....|.|..+..+|+|.|+|.|.|.+|+++.
T Consensus         1 v~l~C~v-~G~P~P~i~W~k~~~~i~~~-~~r~~~~~~~~----g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~   69 (75)
T cd05892           1 VKLECQI-SAIPPPKIFWKRNNEMVQYN-TDRISLYQDNS----GRVTLLIKNVNKKDAGWYTVSAVNEAGVATC   69 (75)
T ss_pred             CEEEEEE-EecCCCeEEEEECCEECcCC-CCeEEEEEcCC----CcEEEEECCCChhhCEEEEEEEEcCcCeEEE
Confidence            5799998 99999999999999988632 33554432211    1125899999999999999999999999864

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.62  E-value=1.9e-14  Score=92.08  Aligned_cols=93  Identities=24%  Similarity=0.474  Sum_probs=67.3

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEe---eecEEEEccCCCCCCeEEEEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVCS  112 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C~  112 (292)
                      .|.+...+.......|+.++|.|.+.|.|.|.+.|++++..+.........+....   ..+.|.|.+++.+|+|.|+|.
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT   81 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence            35555555555566689999999999999999999998765431111111122111   225799999999999999999


Q ss_pred             EEeCCcCeeEEEEEEE
Q psy15128        113 ALSVAGSTTVRAFLQV  128 (292)
Q Consensus       113 ~~~~~~~~~~~~~l~v  128 (292)
                      |.|..|.....+.|.|
T Consensus        82 A~N~~G~~~~~~~l~v   97 (97)
T cd05869          82 ASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EecCCCCeeEEEEEEC
Confidence            9999998887776653

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.62  E-value=1.1e-14  Score=92.96  Aligned_cols=84  Identities=17%  Similarity=0.155  Sum_probs=65.2

Q ss_pred             CccEEecCCcEEEEEEEee-eCCCeeEEEECCeEEeeccCCCcceeEE-----eeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         44 QDQKVGLNGIASFQCVAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHV-----TQEGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      ....+.+|+++.|.|.+.| .|+|.+.|+|++..+...  ........     ...+.|.|..+..+|+|.|+|.|.|..
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~--~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~   88 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNK--LTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSD   88 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCC--cceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCC
Confidence            3567889999999999999 899999999999876421  11111111     124689999999999999999999999


Q ss_pred             cCeeEEEEEEEE
Q psy15128        118 GSTTVRAFLQVT  129 (292)
Q Consensus       118 ~~~~~~~~l~v~  129 (292)
                      |.....+.|.|.
T Consensus        89 G~~~~t~~L~V~  100 (101)
T cd04975          89 ASKSLTFELYVN  100 (101)
T ss_pred             ccEEEEEEEEEE
Confidence            988877777664

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.62  E-value=1.3e-15  Score=92.84  Aligned_cols=68  Identities=25%  Similarity=0.401  Sum_probs=54.9

Q ss_pred             CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCc-eEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSK-RVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      |+.+.|.|.+ .|.|.|.++|+++|.++...... +....         ...|.|..+..+|+|.|.|.|.|..|....
T Consensus         1 G~~v~l~C~~-~G~P~p~i~W~k~g~~i~~~~~~~~~~~~---------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   69 (76)
T cd05867           1 GETARLDCQV-EGIPTPNITWSINGAPIEGTDPDPRRHVS---------SGALILTDVQPSDTAVYQCEARNRHGNLLA   69 (76)
T ss_pred             CCeEEEEEEe-eEeCCCeEEEEECCEECCCCCCCceEEee---------CCEEEECCCChhhCEEEEEEEECCCCeEEE
Confidence            7889999998 89999999999999988543222 33221         125889999999999999999999998764

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.61  E-value=8.9e-16  Score=92.66  Aligned_cols=71  Identities=20%  Similarity=0.265  Sum_probs=51.6

Q ss_pred             EEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        218 LECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       218 l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      |.|.| .|+|.|.++|+|||++|.........+.....  ......|.|..+..+|+|.|+|+|+|.+|+++++
T Consensus         3 i~~~v-~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~   73 (79)
T cd05855           3 IPFTV-KGNPKPTLQWFHEGAILNESEYICTKIHVINN--TEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKN   73 (79)
T ss_pred             EEEEE-eEeCCCceEEEECCEECCCCcceeeeeEeecc--cceEEEEEECCCCcccCEEEEEEEEcCCcccceE
Confidence            67998 99999999999999999633221111111100  0112368899999999999999999999998753

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.61  E-value=7.7e-16  Score=90.03  Aligned_cols=59  Identities=19%  Similarity=0.278  Sum_probs=49.4

Q ss_pred             eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      ++|.|.+ .|.|+|.++|+|+|++|...               .....|.|..+..+|+|.|+|.|+|..|..++
T Consensus         1 ~~l~c~v-~g~P~P~v~W~kdg~~l~~~---------------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~   59 (67)
T cd05863           1 VKLPVKV-AAYPPPEFQWYKDGKLISGK---------------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEK   59 (67)
T ss_pred             CEEEEEE-EEeCCCEEEEEECCEECccc---------------CCcCEEEECCCCHHHCEEEEEEEEECCccEEE
Confidence            5799998 99999999999999998411               01226889999999999999999999997654

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.61  E-value=8.4e-15  Score=85.64  Aligned_cols=66  Identities=18%  Similarity=0.307  Sum_probs=55.4

Q ss_pred             EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128         54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus        54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      +.|.|.+.|.|.|.+.|+|++..+..          ....+.|.|.++..+|+|.|+|.+.|..|....+..+.+.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~----------~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISG----------KHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcc----------cCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            47999999999999999999987631          1124589999999999999999999999987777777654

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.61  E-value=4.2e-15  Score=94.22  Aligned_cols=79  Identities=27%  Similarity=0.495  Sum_probs=63.1

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +....+.+|+.+.|.|.+ .+.|.|.+.|+++|..+.  .+.++.+....     ....|.|..+...|+|.|+|.|+|.
T Consensus        10 p~~~~~~~G~~~~L~C~~-~g~P~p~v~W~k~g~~l~--~~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C~a~N~   81 (92)
T cd05747          10 PRSLTVSEGESARFSCDV-DGEPAPTVTWMREGQIIV--SSQRHQITSTE-----YKSTFEISKVQMSDEGNYTVVVENS   81 (92)
T ss_pred             CccEEEeCCCcEEEEEEE-eecCCCEEEEEECCEECC--CCCcEEEEEcC-----CeeEEEECCCCcccCEeEEEEEEcC
Confidence            457789999999999998 899999999999999875  33333332221     1236889999999999999999999


Q ss_pred             ccccccC
Q psy15128        285 RNQQQHG  291 (292)
Q Consensus       285 ~g~~~~~  291 (292)
                      .|.++.+
T Consensus        82 ~G~~~~~   88 (92)
T cd05747          82 EGKQEAQ   88 (92)
T ss_pred             CCCEeEE
Confidence            9998753

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.60  E-value=1.7e-15  Score=92.78  Aligned_cols=73  Identities=19%  Similarity=0.288  Sum_probs=52.8

Q ss_pred             EEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        218 LECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       218 l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      |.|.+ .|.|.|.++|+|+|++|.......................|.|..+..+|+|.|+|+|+|.+|+++.+
T Consensus         3 i~~~v-~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~   75 (81)
T cd04971           3 IPFTV-RGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKS   75 (81)
T ss_pred             EEEEe-EeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeE
Confidence            68998 99999999999999999643322222222110111223368899999999999999999999998753

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.60  E-value=1.7e-15  Score=91.38  Aligned_cols=70  Identities=23%  Similarity=0.307  Sum_probs=54.7

Q ss_pred             eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      ++|+|.+ .|.|.|.+.|+|++.++.. ...++.+..++.    ....|.|..+..+|+|.|+|.|.|.+|+.+.+
T Consensus         1 v~l~C~v-~G~P~P~v~W~k~~~~l~~-~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   70 (75)
T cd05893           1 VRLECRV-SGVPHPQIFWKKENESLTH-NTDRVSMHQDNC----GYICLLIQGATKEDAGWYTVSAKNEAGIVSCT   70 (75)
T ss_pred             CEEEEEE-eEecCCEEEEEECCEECCC-CCCeEEEEEcCC----CEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence            5799998 9999999999999998853 234555433221    11248899999999999999999999998653

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.60  E-value=2e-14  Score=91.10  Aligned_cols=90  Identities=29%  Similarity=0.533  Sum_probs=71.3

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeC
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                      |.+...+....+.+|+++.|.|.+.+.|.+.+.|++++..+..  ..............|.|.++..+|+|.|+|.+.+.
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~   78 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTS--SQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNS   78 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEES--SSSEEEEEETTEEEEEESSESGGGSEEEEEEEEET
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceee--eeeeeeecccceeEEccCCCChhhCEEEEEEEEEC
Confidence            4566677888999999999999999999999999999887753  12222222224568999999999999999999999


Q ss_pred             CcCeeEEEEEEE
Q psy15128        117 AGSTTVRAFLQV  128 (292)
Q Consensus       117 ~~~~~~~~~l~v  128 (292)
                      .|.......|.|
T Consensus        79 ~g~~~~~~~l~V   90 (90)
T PF07679_consen   79 SGEATASVNLTV   90 (90)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEC
Confidence            887777766654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.60  E-value=7.1e-15  Score=88.48  Aligned_cols=71  Identities=32%  Similarity=0.557  Sum_probs=55.7

Q ss_pred             EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEee--e--cEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128         54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ--E--GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  128 (292)
Q Consensus        54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v  128 (292)
                      +.|.|.+.|.|.|.+.|+|++..+....    .+.....  .  ..|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~----~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNT----DRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCC----CeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            4799999999999999999998763211    1222221  2  27999999999999999999999998888777653

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.60  E-value=2.5e-15  Score=90.16  Aligned_cols=66  Identities=26%  Similarity=0.413  Sum_probs=52.4

Q ss_pred             ceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        215 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       215 ~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      ++.|.|.+ .|.|.|.+.|+++|.++..  ..++.+..++        .|.|..+..+|+|.|+|.|+|..|+++.+
T Consensus         1 ~v~l~C~~-~G~P~p~v~W~k~g~~~~~--~~~~~~~~~~--------~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~   66 (71)
T cd05723           1 DVIFECEV-TGKPTPTVKWVKNGDMVIP--SDYFKIVKEH--------NLQVLGLVKSDEGFYQCIAENDVGNVQAS   66 (71)
T ss_pred             CEEEEEEE-EEeCCCEEEEEECCeECCC--CCCEEEEecC--------CEEEEcCCcccCEEEEEEEEcCCCEEEEE
Confidence            47899999 8999999999999988752  2333333232        36677899999999999999999998754

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.59  E-value=5.1e-15  Score=93.39  Aligned_cols=78  Identities=19%  Similarity=0.237  Sum_probs=60.0

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      ....+.+|+.+.|.|.+ .|.|.|.+.|+++|..+...  ........     .....|.|..+..+|.|.|+|.|+|.+
T Consensus         8 ~~~~v~~G~~v~l~C~~-~G~P~p~v~W~~~g~~~~~~--~~~~~~~~-----~~~~~L~I~~v~~~D~g~Y~C~A~N~~   79 (90)
T cd04972           8 NATVVYEGGTATIRCTA-EGSPLPKVEWIIAGLIVIQT--RTDTLETT-----VDIYNLQLSNITSETQTTVTCTAENPV   79 (90)
T ss_pred             cCEEEcCCCcEEEEEEE-EEcCCCeEEEEECCEEccCC--ccEEEEec-----CCEEEEEEecCCcccCEEEEEEEECCC
Confidence            34568899999999999 89999999999999887422  11111100     122368899999999999999999999


Q ss_pred             cccccC
Q psy15128        286 NQQQHG  291 (292)
Q Consensus       286 g~~~~~  291 (292)
                      |+++.+
T Consensus        80 G~~~~~   85 (90)
T cd04972          80 GQANVS   85 (90)
T ss_pred             CceeEE
Confidence            997653

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.59  E-value=1.9e-14  Score=91.16  Aligned_cols=85  Identities=18%  Similarity=0.382  Sum_probs=62.8

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCC-CeeEEEE-CCeEEeeccCCCcceeEEe----eecEEEEccCCCCCCeEEEEEE
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPL-PSVFWTQ-EGSQVLMFPGNAYGHLHVT----QEGTLRIQGVQKEDAGFFVCSA  113 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~-~~v~W~~-~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~~  113 (292)
                      .+.|....+..|+.++|.|.+.|.|. |.+.|++ ++..+.. ..   .+....    ..+.|.|.+++.+|+|.|+|.|
T Consensus         4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~-~~---~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A   79 (96)
T cd05865           4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTP-NQ---QRISVVRNDDYSSTLTIYNANIDDAGIYKCVV   79 (96)
T ss_pred             EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccc-cC---CeEEEEeCCCCceEEEEeccChhhCEEEEEEE
Confidence            34566677899999999999999984 6999998 5654421 11   122221    1358999999999999999999


Q ss_pred             EeCC-cCeeEEEEEEE
Q psy15128        114 LSVA-GSTTVRAFLQV  128 (292)
Q Consensus       114 ~~~~-~~~~~~~~l~v  128 (292)
                      .|.. +....++.|.|
T Consensus        80 ~N~~~g~~~~s~~l~v   95 (96)
T cd05865          80 SNEDEGESEATVNVKI   95 (96)
T ss_pred             EcCCCCcEEEEEEEEE
Confidence            9986 66666666654

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.59  E-value=2.9e-14  Score=88.81  Aligned_cols=82  Identities=23%  Similarity=0.463  Sum_probs=66.5

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      ...|....+..|+.+.|.|.+.|.|.|.+.|++++..+..     ..+.. ..++.|.|.++..+|+|.|+|.+.|..|.
T Consensus         3 ~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~-----~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~   76 (85)
T cd05728           3 LKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLAS-----ENRIE-VEAGDLRITKLSLSDSGMYQCVAENKHGT   76 (85)
T ss_pred             cccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCC-----CCeEE-EeCCEEEEeeCCHHHCEEEEEEEECCCCe
Confidence            3456678899999999999999999999999999986531     11222 34568999999999999999999999998


Q ss_pred             eeEEEEEE
Q psy15128        120 TTVRAFLQ  127 (292)
Q Consensus       120 ~~~~~~l~  127 (292)
                      ....+.|.
T Consensus        77 ~~~~~~l~   84 (85)
T cd05728          77 IYASAELA   84 (85)
T ss_pred             EEEEEEEE
Confidence            77766654

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.59  E-value=2.8e-15  Score=89.44  Aligned_cols=65  Identities=22%  Similarity=0.457  Sum_probs=53.4

Q ss_pred             eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      |.|.|.+ .|.|.|.+.|+++|.++.  ...++.+..+        ..|.|..+..+|+|.|+|.|.|..|.++.+
T Consensus         1 v~L~C~~-~g~P~p~i~W~k~g~~~~--~~~~~~~~~~--------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   65 (69)
T cd05746           1 VQIPCSA-QGDPEPTITWNKDGVQVT--ESGKFHISPE--------GYLAIRDVGVADQGRYECVARNTIGYASVS   65 (69)
T ss_pred             CEeEecc-eEeCCCEEEEEECCEECC--CCCCEEECCC--------CEEEECcCChhhCEEEEEEEECCCCcEEEE
Confidence            5799998 899999999999998885  3344444333        258899999999999999999999998754

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.59  E-value=1.3e-14  Score=90.97  Aligned_cols=76  Identities=39%  Similarity=0.799  Sum_probs=61.0

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      |....+.+|+.+.|.|.+..+.|.+.+.|+++|..+... ..++....+        ..|.|..+..+|+|.|+|.|+|.
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~-~~~~~~~~~--------~~L~I~~~~~~D~G~Y~C~a~N~   73 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLD-NERVRIVDD--------GNLLIAEARKSDEGTYKCVATNM   73 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCC-CCCEEEccC--------CEEEEeECCcccCEEEEEEEEec
Confidence            457788999999999997568999999999999988532 223333222        26889999999999999999999


Q ss_pred             ccccc
Q psy15128        285 RNQQQ  289 (292)
Q Consensus       285 ~g~~~  289 (292)
                      .|...
T Consensus        74 ~G~~~   78 (86)
T cd05724          74 VGERE   78 (86)
T ss_pred             cCcee
Confidence            99864

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.59  E-value=7.6e-15  Score=93.77  Aligned_cols=76  Identities=25%  Similarity=0.461  Sum_probs=60.8

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      ....+..|+.+.|.|.+ .|.|.|.+.|+++|..+... ..++.....       ...|.|..+..+|+|.|+|.|.|.+
T Consensus        11 ~~~~~~~G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~-~~~~~~~~~-------~~~L~I~~v~~~D~G~Y~C~a~N~~   81 (95)
T cd05730          11 VNATANLGQSVTLACDA-DGFPEPTMTWTKDGEPIESG-EEKYSFNED-------GSEMTILDVDKLDEAEYTCIAENKA   81 (95)
T ss_pred             cceEEeCCCCEEEEEec-cEeCCCEEEEEECCEECcCC-CCEEEEeCC-------CCEEEECCCChhhCEEEEEEEEcCC
Confidence            35578899999999998 89999999999999988532 233333222       1258899999999999999999999


Q ss_pred             ccccc
Q psy15128        286 NQQQH  290 (292)
Q Consensus       286 g~~~~  290 (292)
                      |.+..
T Consensus        82 G~~~~   86 (95)
T cd05730          82 GEQEA   86 (95)
T ss_pred             CeEEE
Confidence            98764

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.59  E-value=5e-14  Score=90.34  Aligned_cols=90  Identities=27%  Similarity=0.520  Sum_probs=65.2

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--eEEeeccCCCcceeEEe---eecEEEEccCCCCCCeEEEE
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--SQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVC  111 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C  111 (292)
                      |.+. .+.+..+.+|++++|.|.+.|.|.|.+.|++..  ..+.........+....   ....|.|.+++.+|+|.|+|
T Consensus         3 p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C   81 (98)
T cd05870           3 PHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDC   81 (98)
T ss_pred             CEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEE
Confidence            4443 356788999999999999999999999999953  22211111111223222   23589999999999999999


Q ss_pred             EEEeCCcCeeEEEEEE
Q psy15128        112 SALSVAGSTTVRAFLQ  127 (292)
Q Consensus       112 ~~~~~~~~~~~~~~l~  127 (292)
                      .|.|..|.....+.|.
T Consensus        82 ~A~N~~G~~~~~~~l~   97 (98)
T cd05870          82 EAASRIGGHQKSMYLD   97 (98)
T ss_pred             EEeccCCcceeEEEEe
Confidence            9999999877766654

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.59  E-value=5.1e-14  Score=85.77  Aligned_cols=75  Identities=24%  Similarity=0.437  Sum_probs=59.6

Q ss_pred             CCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128         51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  128 (292)
Q Consensus        51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v  128 (292)
                      |+.+.|.|.+.|.|.|.+.|++++..+....  ...+. ....+.|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~--~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTD--PDPRR-HVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCC--CCceE-EeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            6789999999999999999999998663211  11122 234568999999999999999999999998877776655

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.59  E-value=7.5e-15  Score=92.73  Aligned_cols=81  Identities=22%  Similarity=0.315  Sum_probs=63.4

Q ss_pred             CCCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128        203 AEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK  282 (292)
Q Consensus       203 g~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~  282 (292)
                      |.|....+.+|+.+.|.|.+ .+.|.|.+.|++++..+.............      ....|.|..+..+|+|.|+|.|.
T Consensus         6 ~~p~~v~v~eG~~v~L~C~v-~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~------~~~~L~I~~~~~~D~G~Y~C~a~   78 (92)
T cd05891           6 GLPDVVTIMEGKTLNLTCTV-FGNPDPEVIWFKNDQDIELSEHYSVKLEQG------KYASLTIKGVTSEDSGKYSINVK   78 (92)
T ss_pred             cCCCcEEEcCCCEEEEEEEE-EEeCCCeEEEEECCEECCCCCCEEEEEcCC------CEEEEEECCCChhhCEEEEEEEE
Confidence            45678899999999999998 789999999999998875332222222221      11258899999999999999999


Q ss_pred             eccccccc
Q psy15128        283 NIRNQQQH  290 (292)
Q Consensus       283 n~~g~~~~  290 (292)
                      |..|.++.
T Consensus        79 N~~G~~~~   86 (92)
T cd05891          79 NKYGGETV   86 (92)
T ss_pred             eCCCceee
Confidence            99999864

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.58  E-value=5.1e-15  Score=93.74  Aligned_cols=80  Identities=16%  Similarity=0.320  Sum_probs=58.9

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCC-CeEEEeE-cCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128        205 PKDTRVASGETALLECGPPKGQPE-PTLHWKK-NGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK  282 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~  282 (292)
                      |....+..|+.++|.|.+ .|.|. |.+.|++ +|+.+.. .+.++.+..+..    ....|.|..+..+|+|.|+|.|+
T Consensus         7 p~~~~v~~G~~v~l~C~v-~G~P~~p~i~W~~~~g~~l~~-~~~r~~v~~~~~----~~~~L~I~~v~~~D~G~YtC~A~   80 (96)
T cd05865           7 PSQGEISVGESKFFLCQV-AGEAKDKDISWFSPNGEKLTP-NQQRISVVRNDD----YSSTLTIYNANIDDAGIYKCVVS   80 (96)
T ss_pred             CCccEECCCCeEEEEEEE-eCCCCCCEEEEECCCCcCccc-cCCeEEEEeCCC----CceEEEEeccChhhCEEEEEEEE
Confidence            345678899999999998 88884 7999998 7876642 133443322211    12368999999999999999999


Q ss_pred             ecc-ccccc
Q psy15128        283 NIR-NQQQH  290 (292)
Q Consensus       283 n~~-g~~~~  290 (292)
                      |.+ |+++.
T Consensus        81 N~~~g~~~~   89 (96)
T cd05865          81 NEDEGESEA   89 (96)
T ss_pred             cCCCCcEEE
Confidence            997 66543

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.58  E-value=6e-14  Score=89.61  Aligned_cols=81  Identities=23%  Similarity=0.403  Sum_probs=64.8

Q ss_pred             ccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEe-eecEEEEccCCCCCCeEEEEEEEeCCcCeeEE
Q psy15128         45 DQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT-QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  123 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~  123 (292)
                      ...+..|+.+.|.|.+.|.|.+.+.|++++..+...    ..+.... ..+.|.|.+++.+|.|.|+|.+.|..|.....
T Consensus        12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   87 (95)
T cd05730          12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESG----EEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAE   87 (95)
T ss_pred             ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCC----CCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEE
Confidence            446788999999999999999999999998865321    1122222 23479999999999999999999999988888


Q ss_pred             EEEEEE
Q psy15128        124 AFLQVT  129 (292)
Q Consensus       124 ~~l~v~  129 (292)
                      ..|.|.
T Consensus        88 ~~L~V~   93 (95)
T cd05730          88 IHLKVF   93 (95)
T ss_pred             EEEEEE
Confidence            777765

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.58  E-value=6.3e-15  Score=93.42  Aligned_cols=68  Identities=26%  Similarity=0.464  Sum_probs=53.3

Q ss_pred             CCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccc-cccccceeEEEEeecccccc
Q psy15128        212 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVL-GALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~~~g~y~C~a~n~~g~~~  289 (292)
                      .|+.+.|.|.+ .|.|.|.++|+++|.++......++.....         .|.|..+ ..+|+|.|+|.|+|.+|+..
T Consensus        18 ~g~~v~l~C~~-~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g---------~L~i~~~~~~~D~G~Y~C~A~N~~G~~~   86 (94)
T cd05848          18 DEKKVILNCEA-RGNPVPTYRWLRNGTEIDTESDYRYSLIDG---------NLIISNPSEVKDSGRYQCLATNSIGSIL   86 (94)
T ss_pred             CCCEEEEEEEe-eecCCCEEEEEECCeECccCCCceEEeeCC---------eEEEccCCccCcCEEEEEEEEcCCCeEE
Confidence            47899999998 899999999999999886433334433322         4667665 46899999999999999874

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.58  E-value=4.1e-14  Score=89.57  Aligned_cols=82  Identities=23%  Similarity=0.410  Sum_probs=63.5

Q ss_pred             CCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEe--eecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT--QEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      |....+.+|+++.|.|.+.|.|.|.+.|++++..+...  ... .....  ....|.|.+++.+|+|.|+|.+.|..|..
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~--~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   84 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALS--DHY-NVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGE   84 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccC--CCE-EEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcc
Confidence            44567889999999999999999999999998876321  111 11111  23479999999999999999999999987


Q ss_pred             eEEEEEE
Q psy15128        121 TVRAFLQ  127 (292)
Q Consensus       121 ~~~~~l~  127 (292)
                      .....+.
T Consensus        85 ~~~~~v~   91 (92)
T cd05737          85 TVDVTVS   91 (92)
T ss_pred             eEEEEEe
Confidence            7766554

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.58  E-value=3.9e-14  Score=84.92  Aligned_cols=70  Identities=31%  Similarity=0.635  Sum_probs=56.6

Q ss_pred             cEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128         53 IASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  127 (292)
Q Consensus        53 ~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~  127 (292)
                      ++.|.|.+.|.|.|.+.|+|++..+.  +   ..+.....++.|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~--~---~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~   70 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVI--P---SDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLI   70 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECC--C---CCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence            47899999999999999999997653  1   1223344456789999999999999999999999887777664

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.58  E-value=2.6e-14  Score=86.16  Aligned_cols=71  Identities=34%  Similarity=0.601  Sum_probs=55.7

Q ss_pred             EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeec----EEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128         54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG----TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  128 (292)
Q Consensus        54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~----~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v  128 (292)
                      +.|.|.+.|.|.|.+.|+|++..+...    ..+.......    .|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~----~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHN----TDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCC----CCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            479999999999999999998876321    1223332221    6999999999999999999999998887777653

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.58  E-value=1.2e-14  Score=92.12  Aligned_cols=67  Identities=21%  Similarity=0.343  Sum_probs=52.7

Q ss_pred             CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccc-cccccceeEEEEeecccccc
Q psy15128        213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVL-GALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~~~g~y~C~a~n~~g~~~  289 (292)
                      |+.+.|.|.+ .|.|.|.|+|+++|..+......++.+...         .|.|..+ ...|+|.|+|+|+|.+|+..
T Consensus        19 g~~v~l~C~a-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g---------~L~I~~~~~~~D~G~Y~C~A~N~~G~~~   86 (94)
T cd05850          19 EEKVTLGCRA-RASPPATYRWKMNGTEIKFAPESRYTLVAG---------NLVINNPQKARDAGSYQCLAINRCGTVV   86 (94)
T ss_pred             CCeEEEEeEc-eeCCCCEEEEEECCEECccCCCceEEEECC---------eEEEccCCccCcCEEEEEEEEcCcCcEE
Confidence            4689999998 899999999999999986444444444322         4667654 46899999999999999864

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.58  E-value=5.6e-15  Score=89.27  Aligned_cols=68  Identities=25%  Similarity=0.507  Sum_probs=56.2

Q ss_pred             CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      |+.+.|.|.+ .+.|.|.+.|++++..+.  ...++.+..+        ..|.|..++.+|+|.|+|.|.|..|+.+.+
T Consensus         1 G~~v~L~C~~-~g~P~p~v~W~k~~~~~~--~~~~~~~~~~--------~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   68 (73)
T cd04969           1 GGDVIIECKP-KAAPKPTISWSKGTELLT--NSSRICIWPD--------GSLEILNVTKSDEGKYTCFAENFFGKANST   68 (73)
T ss_pred             CCeEEEEEee-eEcCCCEEEEEECCEEcc--cCCCEEECCC--------CeEEEccCChhHCEEEEEEEECCCCceEEE
Confidence            6889999998 889999999999999875  3344444333        258899999999999999999999998754

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.57  E-value=6.5e-15  Score=89.18  Aligned_cols=69  Identities=20%  Similarity=0.334  Sum_probs=53.2

Q ss_pred             eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      ++|.|.+ .|.|.|.+.|+|+|+.+... ..++.+...+.    ....|.|..+..+|+|.|+|.|.|.+|+++.
T Consensus         1 v~L~C~v-~G~P~P~v~W~k~~~~i~~~-~~r~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   69 (75)
T cd05744           1 VRLECRV-SAIPPPQIFWKKNNEMLTYN-TDRISLYQDNC----GRICLLIQNANKEDAGWYTVSAVNEAGVVSC   69 (75)
T ss_pred             CEEEEEE-eecCCCeEEEEECCEECCCC-CCcEEEEEcCC----CeEEEEECCCCcccCEEEEEEEEcCCCcEEE
Confidence            5799998 99999999999999988532 23443322211    1125889999999999999999999999864

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.57  E-value=9.1e-15  Score=89.62  Aligned_cols=73  Identities=12%  Similarity=0.265  Sum_probs=58.3

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      |....+.+|+.+.|.|.+ .+. .+.+.|+|+|.+|.  .+.++.+..+         .|.|..+..+|+|.|+|.|.|.
T Consensus         1 ~~~~~~~~G~~v~l~C~~-~~~-~~~v~W~k~g~~l~--~~~~~~~~~~---------~L~I~~~~~~DsG~Y~C~a~n~   67 (79)
T cd04973           1 VESYSAHPGDLLQLRCRL-RDD-VQSINWTKDGVQLG--ENNRTRITGE---------EVQIKDAVPRDSGLYACVTSSP   67 (79)
T ss_pred             CCcEEecCCCCEEEEEEe-cCC-CceEEEeeCCcCCC--CCceEEEeCC---------EEEECCCChhhCEEEEEEEeCC
Confidence            346678899999999998 565 56899999999885  3334444322         5889999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      .|.++.
T Consensus        68 ~g~~~~   73 (79)
T cd04973          68 SGSDTT   73 (79)
T ss_pred             CCcccE
Confidence            998754

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.57  E-value=6.7e-14  Score=85.02  Aligned_cols=75  Identities=24%  Similarity=0.426  Sum_probs=60.1

Q ss_pred             CCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128         51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  128 (292)
Q Consensus        51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v  128 (292)
                      |+.+.|.|.+.|.|.|.|.|++++..+...+.  .... ....+.|.|.+++..|.|.|+|.|.|..|....++.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~--~~~~-~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPT--DPSR-KVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCC--CceE-EecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            67899999999999999999999987642221  1111 223458999999999999999999999998888887765

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.57  E-value=9.3e-15  Score=91.40  Aligned_cols=74  Identities=14%  Similarity=0.116  Sum_probs=56.9

Q ss_pred             CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecC--CCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILG--DPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      |+.++|.|.+ .|.|++.+.|+++++.+... ..++.+..  .+.   .....|.|..+..+|+|.|+|.|.|..|.++.
T Consensus         1 g~~~~l~C~~-~g~p~~~i~W~k~~~~i~~~-~~r~~~~~~~~~~---~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~   75 (88)
T cd05735           1 GQKKEMSCTA-HGEKPIIVRWEKEDRIINPE-MSRYLVSTKEVGD---EVISTLQILPTVREDSGFFSCHAINSYGEDRG   75 (88)
T ss_pred             CCeEEEEEEE-ECCCCCEEEEeeCCEECCCC-CCcEEEEEecCCC---cEEEEEEECCCCcccCEEEEEEEEcCCCcceE
Confidence            7899999998 88999999999999887532 23433321  111   12346889999999999999999999999875


Q ss_pred             C
Q psy15128        291 G  291 (292)
Q Consensus       291 ~  291 (292)
                      +
T Consensus        76 ~   76 (88)
T cd05735          76 I   76 (88)
T ss_pred             E
Confidence            3

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.57  E-value=5.7e-14  Score=88.60  Aligned_cols=81  Identities=43%  Similarity=0.853  Sum_probs=63.8

Q ss_pred             CCcEEEEEEEeeeCCCeeEEEECCeEEeeccC---CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128         51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPG---NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  127 (292)
Q Consensus        51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~  127 (292)
                      |+.+.|.|.+.+.|.|.+.|++++........   ....+......+.|.|.+++.+|+|.|+|.+.|..|.....+.|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE   80 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence            67899999999999999999998865432111   122344444466899999999999999999999999988888888


Q ss_pred             EEee
Q psy15128        128 VTSV  131 (292)
Q Consensus       128 v~~~  131 (292)
                      |...
T Consensus        81 V~~~   84 (90)
T cd05726          81 VTDV   84 (90)
T ss_pred             Eeec
Confidence            8753

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.57  E-value=4.4e-14  Score=85.33  Aligned_cols=73  Identities=23%  Similarity=0.471  Sum_probs=59.7

Q ss_pred             CCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128         51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  128 (292)
Q Consensus        51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v  128 (292)
                      |+.+.|.|.+.+.|.+.+.|++++..+.     ...+.....++.|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~-----~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLT-----NSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcc-----cCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            6789999999999999999999998753     122333445568999999999999999999999998877776643

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.57  E-value=7.8e-15  Score=89.00  Aligned_cols=69  Identities=26%  Similarity=0.366  Sum_probs=54.2

Q ss_pred             ceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        215 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       215 ~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      .+.|.|.+ .|.|.|.+.|+++|..+.  .+.++.+....     ....|.|..+...|+|.|+|.|.|..|+++.+
T Consensus         1 ~~~l~c~~-~G~P~p~v~W~k~g~~l~--~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   69 (74)
T cd05748           1 SVRLEVPI-SGRPTPTVTWSKDGKPLK--LSGRVQIETTA-----SSTSLVIKNAERSDSGKYTLTLKNPAGEKSAT   69 (74)
T ss_pred             CEEEEeeE-eeeCCCeEEEEECCEEcC--CCCeEEEEECC-----CeEEEEECCCCcCcCEEEEEEEECCCccEEEE
Confidence            37899998 999999999999999884  33343332221     12368899999999999999999999998653

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.57  E-value=7.8e-14  Score=87.98  Aligned_cols=84  Identities=26%  Similarity=0.391  Sum_probs=64.3

Q ss_pred             CCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCee
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT  121 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~  121 (292)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...  .............|.|.++..+|.|.|+|.|.|..|...
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~--~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~   83 (90)
T cd04972           6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQT--RTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQAN   83 (90)
T ss_pred             CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCC--ccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCcee
Confidence            344556889999999999999999999999999865311  111111122345899999999999999999999999877


Q ss_pred             EEEEEE
Q psy15128        122 VRAFLQ  127 (292)
Q Consensus       122 ~~~~l~  127 (292)
                      ..+.|.
T Consensus        84 ~~~~L~   89 (90)
T cd04972          84 VSVQVT   89 (90)
T ss_pred             EEEEEe
Confidence            776664

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.57  E-value=1.4e-14  Score=90.55  Aligned_cols=77  Identities=19%  Similarity=0.333  Sum_probs=58.9

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCc-eEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK-RVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      ...+.+|+.+.|.|.+ .|.|.|.+.|+++|..+...... .+....       ....|.|..+..+|+|.|+|.|.|..
T Consensus         3 ~~~v~~G~~~~L~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~-------~~~~l~i~~~~~~D~G~Y~C~a~N~~   74 (85)
T cd05857           3 LHAVPAANTVKFRCPA-AGNPTPTMRWLKNGKEFKQEHRIGGYKVRN-------QHWSLIMESVVPSDKGNYTCVVENEY   74 (85)
T ss_pred             cEEcCCCCEEEEEEEc-CCCCCCEEEEEECCEECCCCCceeeeEEeC-------CceEEEEccCCcccCEEEEEEEEeCC
Confidence            3467889999999998 88999999999999988532211 111111       12257788899999999999999999


Q ss_pred             cccccC
Q psy15128        286 NQQQHG  291 (292)
Q Consensus       286 g~~~~~  291 (292)
                      |+..++
T Consensus        75 G~~~~~   80 (85)
T cd05857          75 GSINHT   80 (85)
T ss_pred             CEEEEE
Confidence            998653

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.57  E-value=1e-14  Score=89.19  Aligned_cols=69  Identities=23%  Similarity=0.378  Sum_probs=54.6

Q ss_pred             CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      |+.+.|.|.+ .|.|.|.+.|+++|.++...........        ....|.|..+..+|+|.|+|.|.|..|....
T Consensus         1 G~~~~l~C~~-~g~P~p~i~W~~~g~~~~~~~~~~~~~~--------~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~   69 (76)
T cd04978           1 GETGRLDCEA-EGIPQPTITWRLNGVPIEELPPDPRRRV--------DGGTLILSNVQPNDTAVYQCNASNVHGYLLA   69 (76)
T ss_pred             CCeEEEEEEc-eeeCCCEEEEEECCEECCCCCCcceEEc--------cCCEEEECCCChhhCEEEEEEEEccCCeEEE
Confidence            7889999998 8999999999999998853332211111        1236889999999999999999999999764

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.56  E-value=1.6e-14  Score=92.61  Aligned_cols=83  Identities=17%  Similarity=0.148  Sum_probs=62.9

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccc-cceeEEEEee
Q psy15128        206 KDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALS-DDQWKLIAKN  283 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~C~a~n  283 (292)
                      ....+.+|+.+.|.|.+ .|.|.| .+.|++++..+......++.+...... ......|.|..+..+| .|.|.|.|.|
T Consensus         9 ~~~~~~~G~~v~L~C~~-~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~-~~~~s~L~I~~v~~~d~~G~Y~C~A~N   86 (98)
T cd05758           9 ATQYAILGDKGRVECFI-FSTPPPDRIVWTWKENELESGSSGRYTVETDPSP-GGVLSTLTISNTQESDFQTSYNCTAWN   86 (98)
T ss_pred             CcEEEeCCCcEEEEEEE-cccCCCCEeEEEECCEEccCCCCCCEEEEEecCC-CceEEEEEECCccccccceeEEEEEEc
Confidence            45567899999999999 898988 699999999886544445554433211 1223468899999855 8999999999


Q ss_pred             ccccccc
Q psy15128        284 IRNQQQH  290 (292)
Q Consensus       284 ~~g~~~~  290 (292)
                      ..|.+..
T Consensus        87 ~~G~~~~   93 (98)
T cd05758          87 SFGSGTA   93 (98)
T ss_pred             CCCcccE
Confidence            9999764

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.56  E-value=6.3e-14  Score=90.77  Aligned_cols=93  Identities=31%  Similarity=0.554  Sum_probs=64.9

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEE---EE--ccCCCCCCeEEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTL---RI--QGVQKEDAGFFV  110 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l---~i--~~~~~~d~g~Y~  110 (292)
                      +|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+...............++.+   .+  ..+..+|+|.|+
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence            4677778888899999999999999999999999999998764311111111112222222   22  234689999999


Q ss_pred             EEEEeCCcC-eeEEEEEEE
Q psy15128        111 CSALSVAGS-TTVRAFLQV  128 (292)
Q Consensus       111 C~~~~~~~~-~~~~~~l~v  128 (292)
                      |.+.|..|. ....+.|.|
T Consensus        81 C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          81 CVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEccccceecceEEEEe
Confidence            999999987 455555544

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.56  E-value=8.5e-14  Score=89.20  Aligned_cols=91  Identities=23%  Similarity=0.399  Sum_probs=66.0

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEE---eeecEEEEccCCCCCCeEEEEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV---TQEGTLRIQGVQKEDAGFFVCS  112 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~Y~C~  112 (292)
                      +|.+. .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.........+...   ...+.|.|.+++.+|+|.|+|.
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   80 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE   80 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence            34443 3456778899999999999999999999999875432111111112222   1235899999999999999999


Q ss_pred             EEeCCcCeeEEEEEE
Q psy15128        113 ALSVAGSTTVRAFLQ  127 (292)
Q Consensus       113 ~~~~~~~~~~~~~l~  127 (292)
                      +.|..|.....+.|.
T Consensus        81 a~N~~G~~~~s~~l~   95 (96)
T cd05732          81 ASNRIGGDQQSMYLE   95 (96)
T ss_pred             EEeCCCCcEEEEEEe
Confidence            999999887766654

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.56  E-value=6e-14  Score=87.73  Aligned_cols=76  Identities=26%  Similarity=0.353  Sum_probs=60.7

Q ss_pred             CCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEe-------eecEEEEccCCCCCCeEEEEEEEeCCcCeeEE
Q psy15128         51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT-------QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  123 (292)
Q Consensus        51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~  123 (292)
                      |+.++|.|.+.|.|.+.+.|++++..+...  .  .+....       ..+.|.|.++..+|+|.|+|.|.|..|.....
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~--~--~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~   76 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPE--M--SRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGI   76 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCC--C--CcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEE
Confidence            788999999999999999999998755211  1  122111       12579999999999999999999999999888


Q ss_pred             EEEEEEe
Q psy15128        124 AFLQVTS  130 (292)
Q Consensus       124 ~~l~v~~  130 (292)
                      +.|.|..
T Consensus        77 ~~L~V~~   83 (88)
T cd05735          77 IQLTVQE   83 (88)
T ss_pred             EEEEEeC
Confidence            8888864

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.56  E-value=8.1e-15  Score=91.87  Aligned_cols=76  Identities=21%  Similarity=0.358  Sum_probs=59.4

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeE-cCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKK-NGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN  283 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n  283 (292)
                      +.+..+.+|+.+.|.|.+ .|.|. .+.|++ +|.++.  .+.++.+..++.     ...|.|..+..+|+|.|+|.|+|
T Consensus         7 ~~~~~v~~G~~v~l~C~~-~G~P~-~v~W~k~~g~~~~--~~~r~~~~~~g~-----~~~L~I~~v~~~D~G~Y~C~A~N   77 (92)
T cd05866           7 LSKVELSVGESKFFTCTA-IGEPE-SIDWYNPQGEKIV--SSQRVVVQKEGV-----RSRLTIYNANIEDAGIYRCQATD   77 (92)
T ss_pred             ecceEEcCCCeEEEEEEE-EEeCC-eEEEEeCCCeEec--CCCCEEEEeCCC-----eeEEEEecCChHHCEEEEEEEEc
Confidence            346678899999999998 88888 899998 476664  334554433321     22688999999999999999999


Q ss_pred             cccccc
Q psy15128        284 IRNQQQ  289 (292)
Q Consensus       284 ~~g~~~  289 (292)
                      ..|...
T Consensus        78 ~~G~~~   83 (92)
T cd05866          78 AKGQTQ   83 (92)
T ss_pred             CCCcEE
Confidence            999864

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.56  E-value=1.7e-14  Score=90.61  Aligned_cols=72  Identities=17%  Similarity=0.305  Sum_probs=57.9

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      ....+.+|++++|.|.+ .|. .|.+.|++++.++..   .++.+..+       ...|.|..+..+|+|.|+|.|.|..
T Consensus        11 ~~~~v~~g~~v~l~C~a-~g~-~p~i~W~kng~~l~~---~~~~~~~~-------~~~L~I~~v~~~D~G~Y~C~a~N~~   78 (91)
T cd05740          11 GNQPPEDNQPVTLTCEA-EGQ-ATYIWWVNNGSLLVP---PRLQLSND-------NRTLTFNNVTRSDTGHYQCEASNEV   78 (91)
T ss_pred             CccccccCCcEEEEEEe-CCC-CCEEEEEECCEECCC---CCEEEeCC-------CCEEEECcCChhhCEEEEEEEEcCC
Confidence            35678899999999998 788 899999999988742   23333222       1268899999999999999999999


Q ss_pred             cccc
Q psy15128        286 NQQQ  289 (292)
Q Consensus       286 g~~~  289 (292)
                      |...
T Consensus        79 G~~~   82 (91)
T cd05740          79 SNMT   82 (91)
T ss_pred             CCEE
Confidence            9753

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.56  E-value=1.2e-14  Score=86.29  Aligned_cols=65  Identities=17%  Similarity=0.342  Sum_probs=48.8

Q ss_pred             CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      |+.++|.|.+ .|.|.|.|.|+++|+++..  ..+... ..        ..|.|..+  .|+|.|+|.|.|.+|....+
T Consensus         1 G~~v~L~C~a-~G~P~P~v~W~k~g~~l~~--~~~~~~-~~--------~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~   65 (69)
T cd05739           1 GGSVNLTCVA-VGAPMPYVKWMKGGEELTK--EDEMPV-GR--------NVLELTNI--YESANYTCVAISSLGMIEAT   65 (69)
T ss_pred             CCeEEEEEEe-eecCCCEEEEEECCEECCC--ccceec-Cc--------cEEEEecc--ccCeeEEEEEEeCCCEEEEE
Confidence            6789999999 8999999999999988742  222211 11        13555554  47999999999999987653

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.55  E-value=1.4e-14  Score=88.38  Aligned_cols=65  Identities=20%  Similarity=0.306  Sum_probs=51.0

Q ss_pred             eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccc
Q psy15128        216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  289 (292)
                      ++|.|.+ .|.|.|.+.|+|+|.++.... .++.+...       ...|.|..+..+|+|.|.|.|.|.+|+..
T Consensus         1 v~L~C~~-~g~P~p~v~W~k~g~~l~~~~-~~~~~~~~-------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   65 (77)
T cd05760           1 VTLRCHI-DGHPRPTYQWFRDGTPLSDGQ-GNYSVSSK-------ERTLTLRSAGPDDSGLYYCCAHNAFGSVC   65 (77)
T ss_pred             CEEEEEe-eecCCCcEEEEECCEECCCCC-ccEEEeCC-------CCEEEEeeCCcccCEEEEEEEEeCCCeEe
Confidence            5799998 899999999999999885322 22222221       12688999999999999999999999864

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.55  E-value=6.1e-14  Score=89.74  Aligned_cols=85  Identities=15%  Similarity=0.248  Sum_probs=64.2

Q ss_pred             ccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcc-e---eEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         45 DQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYG-H---LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~-~---~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      ...+..|+.+.|.|.+.|+|.|.+.|+|++..+......... .   ......+.|.|.++..+|+|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            456778999999999999999999999999876421110000 0   001123589999999999999999999999888


Q ss_pred             eEEEEEEEE
Q psy15128        121 TVRAFLQVT  129 (292)
Q Consensus       121 ~~~~~l~v~  129 (292)
                      ..++.|.|.
T Consensus        92 ~~t~~l~V~  100 (101)
T cd05859          92 SYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEE
Confidence            777777664

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.55  E-value=6.1e-14  Score=83.11  Aligned_cols=69  Identities=20%  Similarity=0.287  Sum_probs=55.6

Q ss_pred             EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128         54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus        54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      +.|.|.+.|.|.|.+.|+|++..+...       ........|.|.++..+|+|.|+|.+.|..|......++.+.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~-------~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLN-------HTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCC-------CEEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence            368999999999999999999876311       112234589999999999999999999999987777666653

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.55  E-value=6.7e-15  Score=88.08  Aligned_cols=63  Identities=19%  Similarity=0.325  Sum_probs=50.8

Q ss_pred             eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      +.|.|.+ .|.|+|.+.|+|+|+++...  .+....         ...|.|..+..+|+|.|+|.|.|..|..++
T Consensus         1 ~~l~c~v-~g~P~p~v~W~k~g~~l~~~--~~~~~~---------~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~   63 (71)
T cd04976           1 VRLPVKV-KAYPPPEIQWYKNGKLISEK--NRTKKS---------GHSLTIKDVTEEDAGNYTVVLTNKQAKLEK   63 (71)
T ss_pred             CEEEeEE-EEeCCCEEEEEECCEECCCC--CEEEcC---------CCEEEECcCCHHHCEEEEEEEEcCCccEEE
Confidence            5799998 89999999999999998532  333221         126889999999999999999999997643

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.55  E-value=8.3e-14  Score=85.10  Aligned_cols=75  Identities=29%  Similarity=0.559  Sum_probs=60.3

Q ss_pred             CCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128         51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  128 (292)
Q Consensus        51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v  128 (292)
                      |+.+.|.|.+.|.|.|.+.|++++..+......   .........|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~---~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD---PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc---ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            678999999999999999999999876422211   123344578999999999999999999999998877777665

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.55  E-value=7.1e-15  Score=87.13  Aligned_cols=62  Identities=19%  Similarity=0.318  Sum_probs=50.0

Q ss_pred             eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      +.|.|.+ .|.|.|.+.|+|+|+++..  ..++  .        ....|.|..+..+|+|.|+|.|.|..|+.+.
T Consensus         1 ~~~~c~v-~G~P~P~v~W~k~g~~l~~--~~~~--~--------~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~   62 (70)
T cd05864           1 VKIPVKY-YGYPPPEVKWYKNGQLIVL--NHTF--K--------RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQ   62 (70)
T ss_pred             CEEEeEE-EEeCCCEEEEEECCEECCC--CCEE--c--------cCCEEEECcCCHHHCEEEEEEEEECCCceee
Confidence            4789998 9999999999999999852  2222  1        1125889999999999999999999997653

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.54  E-value=1.7e-14  Score=88.32  Aligned_cols=70  Identities=24%  Similarity=0.311  Sum_probs=55.1

Q ss_pred             CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      |+.+.|.|.+ .|.|.|.+.|++++..+..  ..++.+....     ....|.|..+..+|+|.|+|.|.|..|....
T Consensus         1 G~~v~l~C~~-~g~P~p~v~W~~~~~~~~~--~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   70 (78)
T cd05743           1 GETVEFTCVA-TGVPTPIINWRLNWGHVPD--SARVSITSEG-----GYGTLTIRDVKESDQGAYTCEAINTRGMVFG   70 (78)
T ss_pred             CCEEEEEEEE-EEecCCEEEEEECCeECCC--CCCEEEEECC-----CEEEEEECCCChHHCEEEEEEEEecCCEEEe
Confidence            6889999998 8999999999999988752  2333332221     1236889999999999999999999998754

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.54  E-value=2.7e-14  Score=90.47  Aligned_cols=78  Identities=28%  Similarity=0.451  Sum_probs=63.5

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +....+.+|+++.|.|.+ .+.|.+.+.|+++|..+.......+....       ....|.|..+...|+|.|+|.|+|.
T Consensus         7 ~~~~~v~~G~~~~l~c~~-~~~p~~~v~W~~~~~~l~~~~~~~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~~~n~   78 (90)
T PF07679_consen    7 PKDVTVKEGESVTLECEV-SGNPPPTVTWYKNGRPLTSSQRYQIESDG-------GSSSLTIKNVTREDAGTYTCVASNS   78 (90)
T ss_dssp             SSEEEEETTSEEEEEEEE-EESSSSEEEEEETTEEEESSSSEEEEEET-------TEEEEEESSESGGGSEEEEEEEEET
T ss_pred             cCCEEEeCCCEEEEEEEE-EeCCCCcccccccccceeeeeeeeeeccc-------ceeEEccCCCChhhCEEEEEEEEEC
Confidence            357789999999999998 78899999999999999743333333322       3347999999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      .|..+.
T Consensus        79 ~g~~~~   84 (90)
T PF07679_consen   79 SGEATA   84 (90)
T ss_dssp             TEEEEE
T ss_pred             CCEEEE
Confidence            998764

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.54  E-value=4e-14  Score=90.80  Aligned_cols=80  Identities=19%  Similarity=0.351  Sum_probs=59.5

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEc--CeEeccC---CCceEEecCCCccccccccccccccccccccceeEEE
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKN--GQFIDLE---SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLI  280 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~~~~~---~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~  280 (292)
                      .+..+.+|+.++|.|.+ .|.|.|.+.|+++  |..+...   .+.++.+....     ....|.|..+..+|+|.|+|.
T Consensus         9 ~~~~~~~G~~v~l~C~~-~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~-----~~~~L~I~~v~~~D~G~Y~C~   82 (98)
T cd05870           9 KNETTVENGAATLSCKA-EGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQH-----GESSLHIKDVKLSDSGRYDCE   82 (98)
T ss_pred             ccEEEcCCCcEEEEEec-ccCCCCeEEEEECCCCceeccCCcCcCceEEEeecC-----CeeEEEEeeCCcCCCEEEEEE
Confidence            46788899999999998 8999999999994  4444211   12234332211     123688999999999999999


Q ss_pred             EeecccccccC
Q psy15128        281 AKNIRNQQQHG  291 (292)
Q Consensus       281 a~n~~g~~~~~  291 (292)
                      |.|.+|.+..+
T Consensus        83 A~N~~G~~~~~   93 (98)
T cd05870          83 AASRIGGHQKS   93 (98)
T ss_pred             EeccCCcceeE
Confidence            99999987653

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.54  E-value=6.8e-14  Score=84.69  Aligned_cols=70  Identities=29%  Similarity=0.507  Sum_probs=54.4

Q ss_pred             EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEee----ecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128         54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ----EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  127 (292)
Q Consensus        54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~  127 (292)
                      +.|.|.+.|.|.|.+.|+|++..+...    ..+.....    ...|.|.+++.+|+|.|+|.+.|..|.....+.|.
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~----~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   74 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYN----TDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLD   74 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCC----CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEe
Confidence            479999999999999999999776321    11222211    12699999999999999999999999888777664

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.54  E-value=7.1e-14  Score=83.34  Aligned_cols=68  Identities=34%  Similarity=0.676  Sum_probs=55.2

Q ss_pred             EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEE
Q psy15128         54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL  126 (292)
Q Consensus        54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l  126 (292)
                      +.|.|.+.|.|.|.+.|+|++..+.     ...+......+.|.|.++..+|+|.|+|.+.|..|.......|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~-----~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVT-----ESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECC-----CCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            4799999999999999999987653     1123334456789999999999999999999999987766654

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.54  E-value=5.6e-14  Score=91.00  Aligned_cols=81  Identities=25%  Similarity=0.426  Sum_probs=56.2

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccC---CCceEEecCCCccccccccccccccccccccceeEEEE
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLE---SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIA  281 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a  281 (292)
                      +....+.+|+.+.|.|.+ .|.|.|.+.|+|+|+.+...   ...+.....++...   ...+.+..+..+|+|.|+|.|
T Consensus         8 p~~~~v~~G~~~~l~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~D~G~Y~C~a   83 (100)
T cd07693           8 PSDLIVSKGDPATLNCKA-EGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLF---FLRVVHGRKGRSDEGVYVCVA   83 (100)
T ss_pred             CceeEEcCCCeEEEEeeC-CcCCCCEEEEEECCEECccccCCCCcceEEecCCcEE---EEEeeccCCCcCcCEEEEEEE
Confidence            356788899999999998 89999999999999988541   11222222222111   011222334789999999999


Q ss_pred             eecccccc
Q psy15128        282 KNIRNQQQ  289 (292)
Q Consensus       282 ~n~~g~~~  289 (292)
                      +|..|...
T Consensus        84 ~N~~G~~~   91 (100)
T cd07693          84 HNSLGEAV   91 (100)
T ss_pred             Ecccccee
Confidence            99999843

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.53  E-value=3.3e-14  Score=89.34  Aligned_cols=74  Identities=24%  Similarity=0.436  Sum_probs=58.7

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +....+.+|+.+.|.|.+ .|.|.|.+.|++++..+...  .....         ....|.|..+..+|+|.|.|.|.|.
T Consensus         8 p~~~~~~~g~~v~l~C~~-~g~P~p~v~W~k~~~~~~~~--~~~~~---------~~~~L~i~~v~~~D~G~Y~C~a~N~   75 (88)
T cd04968           8 PKDTYALKGQNVTLECFA-LGNPVPQIKWRKVDGSMPSS--AEISM---------SGAVLKIPNIQFEDEGTYECEAENI   75 (88)
T ss_pred             CCceEEeCCCcEEEEEEe-eEeCCCEEEEEECCCcCCCc--cEEEE---------eCCEEEECCCCcccCEEEEEEEEEC
Confidence            356678899999999998 89999999999988765321  11111         1226889999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      .|.+..
T Consensus        76 ~G~~~~   81 (88)
T cd04968          76 KGKDTH   81 (88)
T ss_pred             CCcEEE
Confidence            998764

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.53  E-value=3.2e-14  Score=91.20  Aligned_cols=80  Identities=18%  Similarity=0.307  Sum_probs=60.8

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCC---CceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES---SKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK  282 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~  282 (292)
                      ....+.+|+.+.|.|.+ .|.|.|.+.|++++..+....   ..++.+...     .....|.|..+..+|+|.|.|.|+
T Consensus         9 ~~~~~~~g~~v~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~   82 (96)
T cd05732           9 ENQTAVELEQITLTCEA-EGDPIPEITWRRATRNFSEGDKSLDGRIVVRGH-----ARVSSLTLKDVQLTDAGRYDCEAS   82 (96)
T ss_pred             CceeEecCCcEEEEEEE-eEcCCCcEEEEECCcccCCCCccccceEEEeCC-----ccEEEEEECcCCcCcCEEeEEEEE
Confidence            45678899999999998 899999999999987664221   122322211     112368899999999999999999


Q ss_pred             ecccccccC
Q psy15128        283 NIRNQQQHG  291 (292)
Q Consensus       283 n~~g~~~~~  291 (292)
                      |..|.++.+
T Consensus        83 N~~G~~~~s   91 (96)
T cd05732          83 NRIGGDQQS   91 (96)
T ss_pred             eCCCCcEEE
Confidence            999998654

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.53  E-value=2.4e-14  Score=86.59  Aligned_cols=64  Identities=20%  Similarity=0.359  Sum_probs=52.2

Q ss_pred             eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128        216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      ++|.|.+ .|.|.|.+.|++++.++......++....++        .|.|..+...|+|.|.|.|.|..|..
T Consensus         1 a~l~C~~-~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g--------~L~i~~~~~~D~G~Y~C~a~N~~G~~   64 (74)
T cd05738           1 ATMLCAA-SGNPDPEITWFKDFLPVDTTSNGRIKQLRSG--------ALQIENSEESDQGKYECVATNSAGTR   64 (74)
T ss_pred             CEEEEEE-eEecCCEEEEEECCEECccCCCCCEEEcCCc--------EEEECCCChhhCEEEEEEEECCCCce
Confidence            4799998 8999999999999998854344455543332        47888999999999999999999985

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.53  E-value=3.6e-14  Score=90.79  Aligned_cols=77  Identities=18%  Similarity=0.319  Sum_probs=57.5

Q ss_pred             EEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCC---CceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        209 RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES---SKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       209 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      .+..|+.++|.|.+ .|.|.|.++|+++++.+....   ..++.+...     .....|.|..+..+|+|.|+|.|.|..
T Consensus        13 ~~~~g~~v~l~C~~-~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~L~I~~v~~~D~G~Y~C~A~N~~   86 (97)
T cd05869          13 AMELEEQITLTCEA-SGDPIPSITWRTSTRNISSEEKTLDGHIVVRSH-----ARVSSLTLKYIQYTDAGEYLCTASNTI   86 (97)
T ss_pred             EEEcCCCEEEEEEe-eEeCCCEEEEEECCccccCCccccCccEEEEcC-----ccEEEEEEecCccCcCEEEEEEEecCC
Confidence            34458999999998 899999999999988764221   112222221     112368899999999999999999999


Q ss_pred             cccccC
Q psy15128        286 NQQQHG  291 (292)
Q Consensus       286 g~~~~~  291 (292)
                      |.++.+
T Consensus        87 G~~~~~   92 (97)
T cd05869          87 GQDSQS   92 (97)
T ss_pred             CCeeEE
Confidence            998754

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.53  E-value=1.5e-13  Score=82.16  Aligned_cols=70  Identities=17%  Similarity=0.283  Sum_probs=56.3

Q ss_pred             EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128         54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus        54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      +.|.|.+.|.|.|.+.|+|++..+...     .+ .......|.|.++..+|+|.|+|.+.|..|.......+.+.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~-----~~-~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEK-----NR-TKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCC-----CE-EEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            468999999999999999999876311     12 23345689999999999999999999999887777776653

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.52  E-value=1.6e-14  Score=86.64  Aligned_cols=65  Identities=18%  Similarity=0.368  Sum_probs=50.8

Q ss_pred             eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      +.|.|.+ .|.|.|.+.|++++..+...  ......        ....|.|..+..+|+|.|+|.|.|..|.++++
T Consensus         1 ~~L~C~~-~G~P~P~v~W~k~~~~~~~~--~~~~~~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   65 (71)
T cd05876           1 LVLECIA-EGLPTPEVHWDRIDGPLSPN--RTKKLN--------NNKTLQLDNVLESDDGEYVCTAENSEGSARHH   65 (71)
T ss_pred             CEEEEEe-eEecCCeEEEEECCcCCCCC--ceeEEc--------CCCEEEEcccCHHhCEEEEEEEEcCCCeEEEE
Confidence            4799998 89999999999998876421  111111        22368899999999999999999999997653

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.52  E-value=3.9e-14  Score=86.37  Aligned_cols=66  Identities=26%  Similarity=0.492  Sum_probs=48.9

Q ss_pred             eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCcccccccccccccccc----ccccceeEEEEeecccccc
Q psy15128        216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLG----ALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~~~g~y~C~a~n~~g~~~  289 (292)
                      ++|.|.+ .|.|.|.++|+++|.++......++.....       ...|.|..+.    .+|+|.|.|+|+|..|++.
T Consensus         1 i~l~C~~-~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~-------~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05733           1 IVIKCEA-KGNPPPTFSWTRNGTHFDPEKDPRVTMKPD-------SGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI   70 (77)
T ss_pred             CEEEeeC-cccCCCeEEEEECCeECCCCCCCCEEEeCC-------CCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence            4799998 899999999999999885444444443221       1245666554    3689999999999999864

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.52  E-value=1.2e-13  Score=82.81  Aligned_cols=70  Identities=27%  Similarity=0.510  Sum_probs=55.3

Q ss_pred             EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128         54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  128 (292)
Q Consensus        54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v  128 (292)
                      +.|.|.+.|.|.|.+.|++++..+..  .   ........+.|.|.+++.+|+|.|+|.|.|..|.......|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~--~---~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSP--N---RTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCC--C---ceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            47899999999999999999875421  1   1122334568999999999999999999999998777766654

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.52  E-value=7.8e-14  Score=88.99  Aligned_cols=75  Identities=25%  Similarity=0.525  Sum_probs=57.1

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccc-----cccccceeEE
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVL-----GALSDDQWKL  279 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~~~g~y~C  279 (292)
                      |....+.+|+.+.|.|.+ .+.|.|.+.|+|+|..+......+.....++        .+.|..+     ...|.|.|+|
T Consensus         6 P~~~~~~~g~~v~l~C~v-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~--------~l~i~~v~~~~~~~~D~G~Y~C   76 (95)
T cd05722           6 PSDIVAVRGGPVVLNCSA-EGEPPPKIEWKKDGVLLNLVSDERRQQLPNG--------SLLITSVVHSKHNKPDEGFYQC   76 (95)
T ss_pred             CCCeEEcCCCCEEEeeec-ccCCCCEEEEEECCeECccccCcceEEccCC--------eEEEeeeeccCCCCCcCEEEEE
Confidence            456778899999999998 8999999999999998864333333333333        2334333     6889999999


Q ss_pred             EEeec-cccc
Q psy15128        280 IAKNI-RNQQ  288 (292)
Q Consensus       280 ~a~n~-~g~~  288 (292)
                      .|.|. .|..
T Consensus        77 ~a~N~~~G~~   86 (95)
T cd05722          77 VAQNDSLGSI   86 (95)
T ss_pred             EEECCccCcE
Confidence            99999 9986

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.52  E-value=2.2e-13  Score=82.56  Aligned_cols=73  Identities=16%  Similarity=0.335  Sum_probs=55.5

Q ss_pred             cEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128         53 IASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  127 (292)
Q Consensus        53 ~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~  127 (292)
                      .+.|.|.+.|.|.|.+.|++++..+.  ...............|.|.++..+|+|.|+|.+.|..|.....+.|.
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   73 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLK--LSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVK   73 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcC--CCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEE
Confidence            37899999999999999999998762  11111111112345899999999999999999999999877766654

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>KOG3515|consensus

Probab=99.52  E-value=2.6e-13  Score=112.77  Aligned_cols=277  Identities=18%  Similarity=0.247  Sum_probs=162.8

Q ss_pred             CeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEe--eeCCCeeEEEECCeEEeeccCCCcce
Q psy15128         10 EGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE--GSPLPSVFWTQEGSQVLMFPGNAYGH   87 (292)
Q Consensus        10 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~--~~~~~~v~W~~~~~~~~~~~~~~~~~   87 (292)
                      -+.|.|.+.|..+........+.+..+|.-...........+..+.+.|...  +.|.+.+.|..++.............
T Consensus        71 ~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~  150 (741)
T KOG3515|consen   71 VAELNCRAFNSVGMPSRCPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRV  150 (741)
T ss_pred             hhhhhhhhcccccCceecceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccc
Confidence            4489999998877766666888888888766555556667788899999654  35777999999876554333211111


Q ss_pred             e------EEeeecEEEEccCCCCCCeEEEEEEEeCCcCe-eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEe
Q psy15128         88 L------HVTQEGTLRIQGVQKEDAGFFVCSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA  160 (292)
Q Consensus        88 ~------~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~  160 (292)
                      .      .......+.+.....++.|.|+|.+.+..... .....+.+.+..............-..+.+|..+.|.|.+
T Consensus       151 ~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~  230 (741)
T KOG3515|consen  151 GAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNA  230 (741)
T ss_pred             cccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehh
Confidence            1      11234568888888999999999998742211 1122223322222222222222222557799999999987


Q ss_pred             c-cCCCCceEEEeCCeeCCCCCccEEEcCCC------------------cEEEEeee--------------cCCCCCCcc
Q psy15128        161 V-GSPPPHIRWYKNGNSLPPEDTRINVSSSG------------------SLQIDVLR--------------DDFRAEPKD  207 (292)
Q Consensus       161 ~-~~p~~~~~W~~~~~~l~~~~~~~~~~~~~------------------~l~i~~~~--------------~~d~g~~~~  207 (292)
                      . +.|.+.+.|+++........ ......++                  .+....-.              ..--.....
T Consensus       231 ~gg~P~~~~~w~~~s~~~~~~s-l~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~~~~~~~tav~~~~~~~~Ist~~  309 (741)
T KOG3515|consen  231 QGGNPSQQQTWYKDSRPQSESS-LLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNLLAASQITAVQVKPTAVPISTSD  309 (741)
T ss_pred             hcCCcchhhhhccccccchhhh-cccCCCCCCcccccccccccccchhhhhhccccCccccceeeecccccccccccCcc
Confidence            4 55888999999766554320 00000000                  00010000              000012234


Q ss_pred             eEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccc
Q psy15128        208 TRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQ  287 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~  287 (292)
                      ..+..|+...+.|......|.+.+.|+++...........-   ............+..-.....|.|.|+|.|.|..+.
T Consensus       310 ~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~---~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~  386 (741)
T KOG3515|consen  310 SGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASS---KTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELA  386 (741)
T ss_pred             cccccccccccceeccCCCCccceeeeccCcccccccCccc---CCCcccceeeEEeeecccchhcCceEEccccccccc
Confidence            44778999999999877899999999996554321111111   111111111112333467778899999999998855


Q ss_pred             ccc
Q psy15128        288 QQH  290 (292)
Q Consensus       288 ~~~  290 (292)
                      .+.
T Consensus       387 ~~s  389 (741)
T KOG3515|consen  387 HSS  389 (741)
T ss_pred             ccc
Confidence            443

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.51  E-value=5.1e-13  Score=82.89  Aligned_cols=79  Identities=25%  Similarity=0.381  Sum_probs=60.2

Q ss_pred             CcEEEEEEEeeeCCC--eeEEEECCeEEeeccC-CCcceeEE-eeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128         52 GIASFQCVAEGSPLP--SVFWTQEGSQVLMFPG-NAYGHLHV-TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  127 (292)
Q Consensus        52 ~~~~l~C~~~~~~~~--~v~W~~~~~~~~~~~~-~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~  127 (292)
                      +.++|.|.+.|.|.+  .+.|++++..+..... ....+... ...+.|.|.+++..|+|.|+|.|.|..|.....+.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            468999999999876  5899999987643221 11111111 2346899999999999999999999999999988888


Q ss_pred             EEe
Q psy15128        128 VTS  130 (292)
Q Consensus       128 v~~  130 (292)
                      |.+
T Consensus        81 V~~   83 (85)
T cd05854          81 VRG   83 (85)
T ss_pred             EEC
Confidence            864

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.51  E-value=5.6e-14  Score=85.82  Aligned_cols=69  Identities=20%  Similarity=0.312  Sum_probs=53.4

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN  283 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n  283 (292)
                      |.+..+.+|+.+.|.|.+ .|.|.| .|.|+++|.++..    ....         ....|.|..+  .|.|.|.|+|+|
T Consensus         5 P~~~~v~~G~~v~l~C~a-~G~P~P~~I~W~k~g~~l~~----~~~~---------~~s~L~i~~~--~d~g~Y~C~A~N   68 (81)
T cd05749           5 PEDLSVTANTPFNLTCQA-VGPPEPVEILWWQGGSPLGD----PPAP---------SPSVLNVPGL--NETSKFSCEAHN   68 (81)
T ss_pred             CCceEEcCCCCEEEEEEe-eeecCCeEEEEEECCEECCC----CCCC---------CCCEEEEccc--cCCeEEEEEEEe
Confidence            567889999999999998 999999 7999999998842    0000         1124556554  478999999999


Q ss_pred             cccccc
Q psy15128        284 IRNQQQ  289 (292)
Q Consensus       284 ~~g~~~  289 (292)
                      .+|...
T Consensus        69 ~~G~~~   74 (81)
T cd05749          69 AKGVTT   74 (81)
T ss_pred             ccCcEE
Confidence            999764

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.51  E-value=4.9e-13  Score=84.43  Aligned_cols=82  Identities=22%  Similarity=0.425  Sum_probs=62.8

Q ss_pred             CCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEe--eecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT--QEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      |..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+...  ... .....  ....|.|.+++.+|+|.|+|.+.|..|..
T Consensus         8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~--~~~-~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   84 (92)
T cd05891           8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELS--EHY-SVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGE   84 (92)
T ss_pred             CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCC--CCE-EEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCce
Confidence            45677889999999999999999999999998765321  111 11111  12379999999999999999999999887


Q ss_pred             eEEEEEE
Q psy15128        121 TVRAFLQ  127 (292)
Q Consensus       121 ~~~~~l~  127 (292)
                      ...+.|.
T Consensus        85 ~~~~~v~   91 (92)
T cd05891          85 TVDVTVS   91 (92)
T ss_pred             eeEEEEE
Confidence            7666554

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.51  E-value=6e-13  Score=83.43  Aligned_cols=76  Identities=26%  Similarity=0.495  Sum_probs=57.9

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEEC-CeEEeeccCCCcceeEEeee---cEEEEccCCCCCCeEEEEEEEe
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE-GSQVLMFPGNAYGHLHVTQE---GTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      .+.+.+..+.+|+.+.|.|.+.|.|. .+.|+++ +..+.  .+   .+.....+   ..|.|.++..+|+|.|+|.|.|
T Consensus         4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~--~~---~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N   77 (92)
T cd05866           4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIV--SS---QRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD   77 (92)
T ss_pred             EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEec--CC---CCEEEEeCCCeeEEEEecCChHHCEEEEEEEEc
Confidence            34556677899999999999999888 8999985 44432  21   22333323   3899999999999999999999


Q ss_pred             CCcCee
Q psy15128        116 VAGSTT  121 (292)
Q Consensus       116 ~~~~~~  121 (292)
                      ..|...
T Consensus        78 ~~G~~~   83 (92)
T cd05866          78 AKGQTQ   83 (92)
T ss_pred             CCCcEE
Confidence            988753

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.51  E-value=1.2e-13  Score=87.14  Aligned_cols=66  Identities=23%  Similarity=0.402  Sum_probs=51.3

Q ss_pred             CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCcccccccccccccccc-ccccceeEEEEeecccccc
Q psy15128        213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLG-ALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~a~n~~g~~~  289 (292)
                      |..+.|.|.| .|.|.|.++|++++.++... ..++.+..         ..|.|..+. ..|+|.|.|.|+|.+|...
T Consensus        19 ~~~v~l~C~a-~G~P~P~i~W~k~~~~i~~~-~~~~~~~~---------g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~   85 (93)
T cd05849          19 EGKVSVNCRA-RANPFPIYKWRKNNLDIDLT-NDRYSMVG---------GNLVINNPDKYKDAGRYVCIVSNIYGKVR   85 (93)
T ss_pred             CCeEEEeCcC-ccCCCCEEEEEECCEEccCC-CCeEEEEC---------CEEEECcCCcCCCCEEEEEEEEeCcceEE
Confidence            4479999999 89999999999999887422 23443322         257777764 6899999999999999874

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.51  E-value=5.8e-14  Score=86.08  Aligned_cols=74  Identities=12%  Similarity=0.292  Sum_probs=54.9

Q ss_pred             CceEEEeeCCC-CCCCCeEEEeEcCeEecc-CCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        214 ETALLECGPPK-GQPEPTLHWKKNGQFIDL-ESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       214 ~~~~l~C~~~~-~~p~~~~~W~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      +++.|.|.|.. +.+++.|.|++||++|.. ..+.++......    .....|.|.+++..|+|+|+|.|+|.+++.+.+
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~----~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~   76 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQ----DSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAA   76 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccC----CCCCcEEEecCCHHHCEEEEEEEEcccCceEEE
Confidence            47899999843 356789999999999963 233344432211    112269999999999999999999999998764

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.51  E-value=2e-13  Score=85.29  Aligned_cols=80  Identities=24%  Similarity=0.413  Sum_probs=61.4

Q ss_pred             cEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeE-EeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEE
Q psy15128         46 QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLH-VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  124 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~  124 (292)
                      ..+.+|+.+.|.|.+.|.|.+.+.|+|++..+...  ....... ......|.|.++..+|+|.|+|.+.|..|.....+
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~--~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   81 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQE--HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY   81 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCC--CceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEE
Confidence            35678999999999999999999999999876321  1111111 12244799999999999999999999999877776


Q ss_pred             EEE
Q psy15128        125 FLQ  127 (292)
Q Consensus       125 ~l~  127 (292)
                      .|.
T Consensus        82 ~l~   84 (85)
T cd05857          82 HLD   84 (85)
T ss_pred             EEE
Confidence            664

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.51  E-value=5.5e-14  Score=88.61  Aligned_cols=78  Identities=15%  Similarity=0.264  Sum_probs=54.1

Q ss_pred             CCceEEEeeCCCCCCCCeEEEeEc----CeEeccCCCceEEecCCCc--cccccccccccccccccccceeEEEEeeccc
Q psy15128        213 GETALLECGPPKGQPEPTLHWKKN----GQFIDLESSKRVSILGDPW--FDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~~~~W~~~----g~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      |+.+.|.|.+ .+.|.|.|+|+++    |..+.........+.....  ........|.|..++.+|+|.|+|+|.|..|
T Consensus         1 G~~v~L~C~~-~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd05858           1 GSTVEFVCKV-YSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCeEEEEEEE-ecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence            6889999998 8999999999984    4444322111222211111  1111224699999999999999999999999


Q ss_pred             ccccC
Q psy15128        287 QQQHG  291 (292)
Q Consensus       287 ~~~~~  291 (292)
                      .+.++
T Consensus        80 ~~~~~   84 (90)
T cd05858          80 ISHHS   84 (90)
T ss_pred             cccce
Confidence            98754

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.51  E-value=7e-14  Score=84.97  Aligned_cols=66  Identities=27%  Similarity=0.564  Sum_probs=48.5

Q ss_pred             eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCcccccccccccccccc----ccccceeEEEEeecccccc
Q psy15128        216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLG----ALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~~~g~y~C~a~n~~g~~~  289 (292)
                      +.|.|.+ .|.|.|.++|+++|.++....+.++.+...       ...|.|..+.    ..|+|.|+|.|+|..|.+.
T Consensus         1 ~~l~C~~-~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~-------~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05875           1 IIIECEA-KGNPVPTFQWTRNGKFFNVAKDPRVSMRRR-------SGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL   70 (77)
T ss_pred             CEEEEec-cccCCCEEEEEECCEEccCcCCCcEEEeCC-------CceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence            4799999 899999999999999875444555544222       1246666543    2469999999999999875

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.51  E-value=7.1e-14  Score=84.96  Aligned_cols=66  Identities=20%  Similarity=0.560  Sum_probs=47.5

Q ss_pred             eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccc----cccceeEEEEeecccccc
Q psy15128        216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGA----LSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~~~g~y~C~a~n~~g~~~  289 (292)
                      +.|.|.+ .|.|.|.++|+++|.++......++.+....       ..|.|..+..    .|+|.|+|.|+|.+|.+.
T Consensus         1 ~~l~C~a-~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~-------g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05874           1 IVIQCEA-KGKPPPSFSWTRNGTHFDIDKDPKVTMKPNT-------GTLVINIMNGEKAEAYEGVYQCTARNERGAAV   70 (77)
T ss_pred             CEEEeeC-cccCCCeEEEEECCeECCCcCCCCEEEeCCC-------ceEEEeccccCCCCCCCEEEEEEEEcCCCeEE
Confidence            5799998 9999999999999998753343344332211       1355554443    378999999999999864

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.50  E-value=7.7e-14  Score=87.84  Aligned_cols=78  Identities=14%  Similarity=0.224  Sum_probs=52.3

Q ss_pred             CCceEEEeeCCCCCCCCeEEEeEcC----eEeccCCCceEEecCCC--ccccccccccccccccccccceeEEEEeeccc
Q psy15128        213 GETALLECGPPKGQPEPTLHWKKNG----QFIDLESSKRVSILGDP--WFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~~~~W~~~g----~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      |+.++|.|.+ .|.|.|.|+|+|++    ..+..............  .........|.|..+..+|+|.|+|.|.|..|
T Consensus         1 G~~v~l~C~v-~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd04974           1 GSDVEFHCKV-YSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCcEEEEEEE-eCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence            6889999999 89999999999963    33321111111111110  00011223688889999999999999999999


Q ss_pred             ccccC
Q psy15128        287 QQQHG  291 (292)
Q Consensus       287 ~~~~~  291 (292)
                      .+..+
T Consensus        80 ~~~~s   84 (90)
T cd04974          80 PSHHS   84 (90)
T ss_pred             cccCC
Confidence            98653

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.50  E-value=1.8e-13  Score=81.66  Aligned_cols=68  Identities=29%  Similarity=0.650  Sum_probs=54.9

Q ss_pred             EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128         54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  127 (292)
Q Consensus        54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~  127 (292)
                      ++|.|.+.|.|.|.+.|+|++..+.      ..+........|.|.+++.+|+|.|+|.+.|..|.....+.|.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   68 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELP------KGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLT   68 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCC------CCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence            4799999999999999999976542      1223334567899999999999999999999999877766654

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.49  E-value=5.8e-14  Score=83.85  Aligned_cols=64  Identities=23%  Similarity=0.397  Sum_probs=50.7

Q ss_pred             eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      ++|.|.+ .|.|+|.+.|++++..+.   ..+.....+        ..|.|..+..+|+|.|+|.|.|..|....+
T Consensus         1 v~l~C~~-~g~P~p~v~W~k~~~~~~---~~~~~~~~~--------~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   64 (69)
T cd05725           1 VEFQCEV-GGDPVPTVLWRKEDGELP---KGRAEILDD--------KSLKIRNVTAGDEGSYTCEAENMVGKIEAS   64 (69)
T ss_pred             CEEEEEC-ccCCCCEEEEEECCccCC---CCcEEEeeC--------CEEEECcCChhHCEEEEEEEEcCCCcEEEE
Confidence            5799998 899999999999987663   223333222        258899999999999999999999987643

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.49  E-value=8.6e-13  Score=83.63  Aligned_cols=81  Identities=26%  Similarity=0.441  Sum_probs=59.9

Q ss_pred             CcEEeCCCccEEe---cCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCC-CCCCeEEEEE
Q psy15128         37 PSFVVRPQDQKVG---LNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ-KEDAGFFVCS  112 (292)
Q Consensus        37 p~~~~~~~~~~~~---~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~C~  112 (292)
                      |.++..|....+.   +|+.+.|.|.+.|.|.|.+.|++++..+....   ..+. ...++.|.|.++. .+|.|.|+|.
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~---~~~~-~~~~g~L~i~~~~~~~D~G~Y~C~   77 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTES---DYRY-SLIDGNLIISNPSEVKDSGRYQCL   77 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCC---CceE-EeeCCeEEEccCCccCcCEEEEEE
Confidence            4556666665443   46899999999999999999999998763211   1122 2235689998875 6999999999


Q ss_pred             EEeCCcCee
Q psy15128        113 ALSVAGSTT  121 (292)
Q Consensus       113 ~~~~~~~~~  121 (292)
                      |.|..|...
T Consensus        78 A~N~~G~~~   86 (94)
T cd05848          78 ATNSIGSIL   86 (94)
T ss_pred             EEcCCCeEE
Confidence            999988653

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.49  E-value=5.7e-13  Score=81.18  Aligned_cols=72  Identities=22%  Similarity=0.523  Sum_probs=54.1

Q ss_pred             EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeE-EeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128         54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLH-VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus        54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      ++|.|.+.|.|.|.+.|+|++..+...  .  .... ....+.|.|.++..+|+|.|.|.+.|..|.......+++.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~--~--~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~   73 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDG--Q--GNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLS   73 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCC--C--ccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEE
Confidence            479999999999999999998865321  1  1111 2234589999999999999999999998876544444443

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.49  E-value=7e-14  Score=85.00  Aligned_cols=68  Identities=21%  Similarity=0.402  Sum_probs=50.5

Q ss_pred             eEEEeeCCCCCCCCeEEEeEcCeEe-ccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        216 ALLECGPPKGQPEPTLHWKKNGQFI-DLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       216 ~~l~C~~~~~~p~~~~~W~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      ++|.|.+ .|.|.|.++|+++|... +.....++.....       ...|.|..+..+|+|.|.|.|.|..|..+.+
T Consensus         1 a~l~C~~-~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~-------~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~   69 (75)
T cd05763           1 ARLECAA-TGHPTPQIAWQKDGGTDFPAARERRMHVMPE-------DDVFFIVDVKIEDTGVYSCTAQNTAGSISAN   69 (75)
T ss_pred             CEeEeec-ccccCCEEEEEeCCCccCCcccccceEEecC-------CCEEEEeeCCcccCEEEEEEEEcCCCEEEee
Confidence            4799998 89999999999998643 2222223333222       1257889999999999999999999987653

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.49  E-value=3.6e-13  Score=83.37  Aligned_cols=77  Identities=31%  Similarity=0.568  Sum_probs=56.7

Q ss_pred             CCcEEEEEEEeeeCCCeeEEEECCe---EEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128         51 NGIASFQCVAEGSPLPSVFWTQEGS---QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  127 (292)
Q Consensus        51 g~~~~l~C~~~~~~~~~v~W~~~~~---~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~  127 (292)
                      |+.+.|.|.+.|.|.|.+.|+|++.   .....+............+.|.|.++..+|+|.|+|.+.|..|.....+.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            6889999999999999999999742   1111111111222233456899999999999999999999999877766654

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.49  E-value=8.5e-14  Score=84.90  Aligned_cols=67  Identities=28%  Similarity=0.419  Sum_probs=53.2

Q ss_pred             eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      +.|.|.+ .|.|+|.+.|+++++.+......++....++       ..|.|..+..+|.|.|+|.|.|..|.++.
T Consensus         1 ~~L~C~v-~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~-------~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~   67 (76)
T cd05736           1 ASLRCHA-EGIPLPRLTWLKNGMDITPKLSKQLTLIANG-------SELHISNVRYEDTGAYTCIAKNEAGVDED   67 (76)
T ss_pred             CEeEeEe-eecCCCEEEEEECCEECCCCCCccEEEeCCC-------CEEEECcCCcccCEEEEEEEEcCCCCcce
Confidence            4689998 8999999999999998864433444443322       25889999999999999999999998864

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.49  E-value=5e-13  Score=81.90  Aligned_cols=77  Identities=18%  Similarity=0.370  Sum_probs=58.9

Q ss_pred             CccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEE
Q psy15128         44 QDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  123 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~  123 (292)
                      ....+.+|+.+.|.|.+.+. .+.+.|+|++..+..     ..+... ....|.|.+++.+|+|.|+|.+.|..|.....
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~-----~~~~~~-~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~   74 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGE-----NNRTRI-TGEEVQIKDAVPRDSGLYACVTSSPSGSDTTY   74 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCC-----CceEEE-eCCEEEECCCChhhCEEEEEEEeCCCCcccEE
Confidence            45678899999999999885 568999999976631     112222 24589999999999999999999988776655


Q ss_pred             EEEE
Q psy15128        124 AFLQ  127 (292)
Q Consensus       124 ~~l~  127 (292)
                      ..+.
T Consensus        75 ~~v~   78 (79)
T cd04973          75 FSVN   78 (79)
T ss_pred             EEEe
Confidence            5443

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.49  E-value=5.4e-13  Score=83.63  Aligned_cols=76  Identities=26%  Similarity=0.610  Sum_probs=60.2

Q ss_pred             CCCccEEecCCcEEEEEEE-eeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         42 RPQDQKVGLNGIASFQCVA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      .|....+.+|+++.|.|.+ .+.|.+.+.|++++..+...    ..+.....++.|.|.+++.+|+|.|+|.+.|..|..
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~----~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   77 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLD----NERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGER   77 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCC----CCCEEEccCCEEEEeECCcccCEEEEEEEEeccCce
Confidence            3456778899999999998 68899999999998876421    122333346789999999999999999999988765


Q ss_pred             e
Q psy15128        121 T  121 (292)
Q Consensus       121 ~  121 (292)
                      .
T Consensus        78 ~   78 (86)
T cd05724          78 E   78 (86)
T ss_pred             e
Confidence            3

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.49  E-value=3.4e-13  Score=83.77  Aligned_cols=77  Identities=19%  Similarity=0.374  Sum_probs=58.7

Q ss_pred             EEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEE
Q psy15128         47 KVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL  126 (292)
Q Consensus        47 ~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l  126 (292)
                      ....|+.+.|.|.+.+.|.|.+.|++++..+.....    .........|.|.+++.+|+|.|+|.+.|..|.......|
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~----~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v   80 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEI----GESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKV   80 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCcc----ceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEE
Confidence            456799999999999999999999999876532111    1111224579999999999999999999998876655544


Q ss_pred             E
Q psy15128        127 Q  127 (292)
Q Consensus       127 ~  127 (292)
                      .
T Consensus        81 ~   81 (82)
T cd05856          81 D   81 (82)
T ss_pred             e
Confidence            3

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.48  E-value=5.4e-13  Score=80.91  Aligned_cols=73  Identities=29%  Similarity=0.495  Sum_probs=56.1

Q ss_pred             CCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128         51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  127 (292)
Q Consensus        51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~  127 (292)
                      |+.+.|.|.+.|.|.|.+.|++++..... .   ..+......+.|.|..+..+|.|.|+|.+.|..|.....+.|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~-~---~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   73 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLIS-N---SSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELH   73 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEec-C---CCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence            67899999999999999999985433321 1   1223334567899999999999999999999998876666554

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.48  E-value=1.1e-13  Score=87.33  Aligned_cols=78  Identities=15%  Similarity=0.365  Sum_probs=56.8

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeE-cCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKK-NGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN  283 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n  283 (292)
                      |....+..|+.+.|.|.+ .|.|+ .+.|++ ++..+..  ..++.....+    .....|.|..+..+|+|.|+|.|.|
T Consensus         7 p~~~~v~~G~~~~l~C~~-~G~p~-~i~W~~~~~~~~~~--~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~A~N   78 (92)
T cd04977           7 PSQGEISVGESKFFLCQV-IGEPK-DISWFSPNGEKLVT--QQQISVVQND----DVRSTLTIYNANIEDAGIYKCVATD   78 (92)
T ss_pred             cCcEEECCCCeEEEEEEe-EeeCC-eEEEECCCCCEecc--CCCEEEEeCC----CCEEEEEEecCCcccCEEEEEEEEc
Confidence            456788999999999998 77774 999998 5666642  2222222121    1223689999999999999999999


Q ss_pred             ccccccc
Q psy15128        284 IRNQQQH  290 (292)
Q Consensus       284 ~~g~~~~  290 (292)
                      ..|....
T Consensus        79 ~~g~~~~   85 (92)
T cd04977          79 AKGTESE   85 (92)
T ss_pred             CCCCcce
Confidence            9876543

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.48  E-value=9.6e-14  Score=84.61  Aligned_cols=70  Identities=14%  Similarity=0.309  Sum_probs=52.3

Q ss_pred             eEEEeeCCCC-CCCCeEEEeEcCeEeccCCCceE-EecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        216 ALLECGPPKG-QPEPTLHWKKNGQFIDLESSKRV-SILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       216 ~~l~C~~~~~-~p~~~~~W~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      +.|.|.+ .+ .|.|.+.|+++|+++........ .+...     .....|.|..+..+|+|.|+|.|+|..|.++.+
T Consensus         1 ~~l~C~~-~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   72 (75)
T cd05750           1 LVLKCEA-TSEYPSLRFKWFKDGKELNRKNKPRNIKIRNK-----KKNSELQINKAKLADSGEYTCVVENILGNDTVT   72 (75)
T ss_pred             CEEEEEc-cCCCCCceEEEEcCCeeccccCCcceEEEEec-----CceEEEEEccCCcccCeEEEEEEEEcCCceeEE
Confidence            4799999 66 99999999999998864332221 11111     122368899999999999999999999998754

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.48  E-value=5e-14  Score=87.56  Aligned_cols=74  Identities=14%  Similarity=0.224  Sum_probs=57.1

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      ...+..|+.+.|.|.+ .+.|.|.+.|+++|..+.....  ....       .....|.|..+..+|+|.|+|.|.|..|
T Consensus         3 ~~~~~~G~~v~L~C~~-~g~p~p~i~W~k~~~~~~~~~~--~~~~-------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G   72 (82)
T cd05856           3 VIARPVGSSVRLKCVA-SGNPRPDITWLKDNKPLTPTEI--GESR-------KKKWTLSLKNLKPEDSGKYTCHVSNRAG   72 (82)
T ss_pred             ceeccCCCeEEEEEEe-eEeCCCcEEEEECCcCCcCCcc--ceec-------CceEEEEEccCChhhCEEEEEEEEcCCc
Confidence            3456789999999998 8899999999999987742211  1111       1123588999999999999999999999


Q ss_pred             cccc
Q psy15128        287 QQQH  290 (292)
Q Consensus       287 ~~~~  290 (292)
                      ..+.
T Consensus        73 ~~~~   76 (82)
T cd05856          73 EINA   76 (82)
T ss_pred             cEEE
Confidence            8754

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.48  E-value=7.2e-14  Score=85.17  Aligned_cols=71  Identities=17%  Similarity=0.302  Sum_probs=52.4

Q ss_pred             eEEEeeCCCCCCCCeEEEeEcCeEeccCCC--ceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        216 ALLECGPPKGQPEPTLHWKKNGQFIDLESS--KRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      +.|.|.+..+.|.+.+.|+++|+++.....  .++.....     .....|.|..+...|+|.|+|.|+|..|.++.+
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~-----~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~   73 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKK-----KKSSELQISKASLADNGEYKCMVSSKLGNDSVT   73 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeC-----CcEEEEEECcCCcccCEEEEEEEEeCCCceeEE
Confidence            479999855678889999999998853221  22222111     122368899999999999999999999998765

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.47  E-value=2.3e-12  Score=81.76  Aligned_cols=81  Identities=25%  Similarity=0.454  Sum_probs=59.9

Q ss_pred             CcEEeCCCccEEecC---CcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCC-CCCCeEEEEE
Q psy15128         37 PSFVVRPQDQKVGLN---GIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ-KEDAGFFVCS  112 (292)
Q Consensus        37 p~~~~~~~~~~~~~g---~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~C~  112 (292)
                      |.+...|....+.+|   +++.|.|.+.|.|.+.++|++++..+.....   .+.. ..++.|.|.++. ..|.|.|.|.
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~---~~~~-~~~g~L~I~~~~~~~D~G~Y~C~   77 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPE---SRYT-LVAGNLVINNPQKARDAGSYQCL   77 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCC---ceEE-EECCeEEEccCCccCcCEEEEEE
Confidence            455566666655554   5799999999999999999999987642221   1222 235688898765 6999999999


Q ss_pred             EEeCCcCee
Q psy15128        113 ALSVAGSTT  121 (292)
Q Consensus       113 ~~~~~~~~~  121 (292)
                      |.|..|...
T Consensus        78 A~N~~G~~~   86 (94)
T cd05850          78 AINRCGTVV   86 (94)
T ss_pred             EEcCcCcEE
Confidence            999988654

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.47  E-value=1.6e-12  Score=82.07  Aligned_cols=80  Identities=25%  Similarity=0.444  Sum_probs=58.7

Q ss_pred             CcEEeCCCccEEec---CCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCC-CCCCeEEEEE
Q psy15128         37 PSFVVRPQDQKVGL---NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ-KEDAGFFVCS  112 (292)
Q Consensus        37 p~~~~~~~~~~~~~---g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~C~  112 (292)
                      |.+...|....+.+   +..+.|.|.+.|.|.|.++|++++..+...    ..+.. ..++.|.|.++. .+|+|.|.|.
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~----~~~~~-~~~g~L~I~~~~~~~D~G~Y~C~   76 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLT----NDRYS-MVGGNLVINNPDKYKDAGRYVCI   76 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCC----CCeEE-EECCEEEECcCCcCCCCEEEEEE
Confidence            45555555544433   347999999999999999999998876321    11222 335789999885 6899999999


Q ss_pred             EEeCCcCee
Q psy15128        113 ALSVAGSTT  121 (292)
Q Consensus       113 ~~~~~~~~~  121 (292)
                      |.|..|...
T Consensus        77 A~N~~G~~~   85 (93)
T cd05849          77 VSNIYGKVR   85 (93)
T ss_pred             EEeCcceEE
Confidence            999988653

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.47  E-value=5.9e-13  Score=81.44  Aligned_cols=74  Identities=26%  Similarity=0.376  Sum_probs=55.3

Q ss_pred             CCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEE
Q psy15128         51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL  126 (292)
Q Consensus        51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l  126 (292)
                      |+.+.|.|.+.|.|.|.+.|++++..+..  ............+.|.|.++..+|+|.|+|.+.|..|.......+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~   74 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPD--SARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG   74 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCC--CCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence            67899999999999999999998876531  111111111223589999999999999999999998876555443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.47  E-value=1.5e-12  Score=83.42  Aligned_cols=87  Identities=23%  Similarity=0.320  Sum_probs=63.9

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCC-eeEEEECCeEEeeccCCCcceeEEee-------ecEEEEccCCC-CCC
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQ-------EGTLRIQGVQK-EDA  106 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~-~d~  106 (292)
                      ||.+ ..+....+.+|+.+.|.|.+.|.|.| .+.|++++..+......   +.....       .+.|.|.++.. +|.
T Consensus         2 pp~i-~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~---r~~i~~~~~~~~~~s~L~I~~v~~~d~~   77 (98)
T cd05758           2 PPII-TSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSG---RYTVETDPSPGGVLSTLTISNTQESDFQ   77 (98)
T ss_pred             CCeE-cCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCC---CEEEEEecCCCceEEEEEECCccccccc
Confidence            3444 34556678899999999999999998 69999998866432211   222221       24799999998 458


Q ss_pred             eEEEEEEEeCCcCeeEEEEE
Q psy15128        107 GFFVCSALSVAGSTTVRAFL  126 (292)
Q Consensus       107 g~Y~C~~~~~~~~~~~~~~l  126 (292)
                      |.|+|.|.|..|.....+.|
T Consensus        78 G~Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          78 TSYNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             eeEEEEEEcCCCcccEEEEe
Confidence            99999999999987766543

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.47  E-value=1.7e-13  Score=83.09  Aligned_cols=68  Identities=25%  Similarity=0.519  Sum_probs=52.7

Q ss_pred             CCceEEEeeCCCCCCCCeEEEeE-cCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        213 GETALLECGPPKGQPEPTLHWKK-NGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~~~~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      |+.+.|.|.+ .|.|.|.+.|++ ++..+.  ...+.....+        ..|.|..+..+|+|.|+|.|.|..|.++.+
T Consensus         1 G~~~~l~C~~-~g~P~p~v~W~~~~~~~~~--~~~~~~~~~~--------~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~   69 (74)
T cd05764           1 GQRATLRCKA-RGDPEPAIHWISPDGKLIS--NSSRTLVYDN--------GTLDILITTVKDTGSFTCIASNAAGEATAT   69 (74)
T ss_pred             CCeEEEEEEc-cCcCCCEEEEEeCCCEEec--CCCeEEEecC--------CEEEEEECChhhCEEEEEEEECCCCeEEEE
Confidence            7889999998 899999999997 566654  2233332222        257788899999999999999999987653

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.47  E-value=6.3e-13  Score=78.87  Aligned_cols=70  Identities=19%  Similarity=0.229  Sum_probs=52.7

Q ss_pred             EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128         54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  128 (292)
Q Consensus        54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v  128 (292)
                      +.|.|.+.|.|.|.+.|+|++..+...    ..... .....|.|.+++.+|+|.|+|.+.+..........+++
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~----~~~~~-~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~   70 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEK----CSRYH-VDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL   70 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCC----CcEEE-eCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence            368999999999999999999765311    11222 23458999999999999999999997666555555443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.47  E-value=7.9e-13  Score=83.50  Aligned_cols=84  Identities=21%  Similarity=0.410  Sum_probs=57.6

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEE-CCeEEeeccCCCcceeE-EeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQ-EGSQVLMFPGNAYGHLH-VTQEGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      .+.|....+..|+.+.|.|.+.|.|. .+.|++ ++..+. ... ...... ....+.|+|.+++.+|+|.|+|.+.|..
T Consensus         4 ~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~-~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   80 (92)
T cd04977           4 DIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLV-TQQ-QISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAK   80 (92)
T ss_pred             EEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEec-cCC-CEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCC
Confidence            34566678899999999999999875 999998 444332 111 111100 1123489999999999999999999986


Q ss_pred             cC-eeEEEEE
Q psy15128        118 GS-TTVRAFL  126 (292)
Q Consensus       118 ~~-~~~~~~l  126 (292)
                      |. ...++.|
T Consensus        81 g~~~~~sv~l   90 (92)
T cd04977          81 GTESEATVNL   90 (92)
T ss_pred             CCcceeEEEE
Confidence            54 3444443

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.47  E-value=1.6e-13  Score=86.60  Aligned_cols=69  Identities=22%  Similarity=0.367  Sum_probs=53.1

Q ss_pred             CCceEEEeeCCCCCCCCeEEEeEcCeEecc------CCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        213 GETALLECGPPKGQPEPTLHWKKNGQFIDL------ESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      |+.+.|.|.+ .+.|.|.+.|+++|..+..      ....++.+..        ...|.|..+..+|+|.|+|.|.|..|
T Consensus         1 G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~--------~~~L~I~~v~~~D~G~Y~C~a~N~~G   71 (90)
T cd05726           1 GRTVTFQCEA-TGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ--------TGDLTITNVQRSDVGYYICQTLNVAG   71 (90)
T ss_pred             CCEEEEEEEC-CccCCCEEEEEeCCCcceeecccCCCCCCeEEECC--------CCeEEEeeCChhhCEEEEEEEEcCCC
Confidence            6889999998 8999999999998864311      1122333322        23589999999999999999999999


Q ss_pred             cccc
Q psy15128        287 QQQH  290 (292)
Q Consensus       287 ~~~~  290 (292)
                      ....
T Consensus        72 ~~~~   75 (90)
T cd05726          72 SILT   75 (90)
T ss_pred             ceEE
Confidence            8754

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.47  E-value=8.9e-14  Score=83.75  Aligned_cols=65  Identities=23%  Similarity=0.390  Sum_probs=50.4

Q ss_pred             eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      +.|.|.+ .|.|.|.+.|++++..+..   .+.....       ....|.|..+..+|+|.|+|.|.|..|..+++
T Consensus         1 v~l~C~~-~g~P~p~v~W~k~~~~~~~---~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   65 (71)
T cd05731           1 LLLECIA-EGLPTPEISWIKIGGELPA---DRTKFEN-------FNKTLKIDNVSEEDDGEYRCTASNSLGSARHT   65 (71)
T ss_pred             CEEEEEe-eEecCCeEEEEECCeECCC---CceeEec-------CCCEEEECCCCHHHCEEEEEEEEeCCceEEEE
Confidence            4799998 8999999999999887642   1221111       12368899999999999999999999987653

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.47  E-value=1e-12  Score=77.96  Aligned_cols=68  Identities=24%  Similarity=0.525  Sum_probs=51.7

Q ss_pred             CCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEE
Q psy15128         51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL  126 (292)
Q Consensus        51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l  126 (292)
                      |+.+.|.|.+.|.|.|.|.|++++..+..  .   .+. ......|.|.++.  |+|.|+|.|.|..|.....+.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~--~---~~~-~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTK--E---DEM-PVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCC--c---cce-ecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            67899999999999999999999976521  1   111 1223478888874  7899999999999876665544

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.46  E-value=3.7e-13  Score=84.96  Aligned_cols=81  Identities=17%  Similarity=0.205  Sum_probs=61.4

Q ss_pred             ccEEecCCcEEEEEEEee-----eCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         45 DQKVGLNGIASFQCVAEG-----SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~-----~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      ...+.+|+.+.|.|.+.+     .|.+.+.|+|++..+.... ....+... .++.|.|.++..+|+|.|+|.+.|..|.
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~-~~~~r~~~-~~~~L~I~~~~~~DsG~Y~C~~~N~~g~   85 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPT-EERSRMHQ-QKDLLWFLPAALEDSGLYTCVVRNSTYC   85 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccc-cccceeee-cCCeEEEccCCcccCeEEEEEEcCCCcc
Confidence            456778999999999988     5788999999986543211 11122222 3568999999999999999999999888


Q ss_pred             eeEEEEEE
Q psy15128        120 TTVRAFLQ  127 (292)
Q Consensus       120 ~~~~~~l~  127 (292)
                      ....+.|.
T Consensus        86 ~~~~~~L~   93 (94)
T cd05756          86 MKVSISLT   93 (94)
T ss_pred             EEEEEEEE
Confidence            77766654

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.46  E-value=3.3e-13  Score=85.30  Aligned_cols=67  Identities=30%  Similarity=0.474  Sum_probs=51.5

Q ss_pred             CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCcccccccccccccccc-ccccceeEEEEeecccccc
Q psy15128        213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLG-ALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~a~n~~g~~~  289 (292)
                      |..+.|.|.+ .|.|.|.++|++++..+......++.....         .|.|..+. .+|+|.|+|+|+|..|...
T Consensus        19 ~~~~~l~C~~-~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~---------~L~i~~~~~~~d~G~Y~C~a~N~~G~~~   86 (91)
T cd04967          19 EGKVSLNCRA-RGSPPPTYRWLMNGTEIDDEPDSRYSLVGG---------NLVISNPSKAKDAGRYQCLASNIVGTVL   86 (91)
T ss_pred             CCEEEEEEee-eEcCCCEEEEEECCEECCCCCCCCEEEECC---------EEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence            4579999998 889999999999999884333344433322         46676655 5899999999999999764

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.46  E-value=1.2e-12  Score=81.62  Aligned_cols=79  Identities=25%  Similarity=0.352  Sum_probs=59.4

Q ss_pred             CcEEEEEEEeeeCCC--eeEEEECCeEEeeccCC-Ccc-eeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128         52 GIASFQCVAEGSPLP--SVFWTQEGSQVLMFPGN-AYG-HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  127 (292)
Q Consensus        52 ~~~~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~-~~~-~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~  127 (292)
                      +.+.|.|.+.+.|.+  .+.|++++..+...... ... .......+.|.|.+++..|+|.|+|.+.|..+.....+.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            468999999998877  67999999876432211 111 11122456899999999999999999999998888888887


Q ss_pred             EEe
Q psy15128        128 VTS  130 (292)
Q Consensus       128 v~~  130 (292)
                      |.+
T Consensus        81 V~~   83 (85)
T cd04970          81 VRG   83 (85)
T ss_pred             EEC
Confidence            763

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.46  E-value=1e-12  Score=79.49  Aligned_cols=72  Identities=29%  Similarity=0.515  Sum_probs=55.0

Q ss_pred             EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe-eEEEEEEE
Q psy15128         54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST-TVRAFLQV  128 (292)
Q Consensus        54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~-~~~~~l~v  128 (292)
                      ++|.|.+.|.|.|.+.|+|++..+....   ..+.....++.|.|.+++.+|+|.|+|.+.|..|.. ...+.|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~---~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTS---NGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCC---CCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            4799999999999999999987653211   223344456689999999999999999999998874 44555544

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.46  E-value=7.6e-13  Score=79.66  Aligned_cols=70  Identities=29%  Similarity=0.505  Sum_probs=54.3

Q ss_pred             EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128         54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  128 (292)
Q Consensus        54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v  128 (292)
                      +.|.|.+.|.|.|.+.|++++..+..  .   ..........|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~--~---~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPA--D---RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCC--C---ceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            47999999999999999999876521  1   1111223458999999999999999999999988776666654

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.46  E-value=1.7e-12  Score=81.50  Aligned_cols=78  Identities=26%  Similarity=0.465  Sum_probs=60.1

Q ss_pred             CccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEe-eecEEEEccCCCCCCeEEEEEEEeCCcCeeE
Q psy15128         44 QDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT-QEGTLRIQGVQKEDAGFFVCSALSVAGSTTV  122 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~  122 (292)
                      ....+.+|++++|.|.+.|. .|.+.|++++..+..      .+.... ..+.|.|.+++.+|+|.|.|.|.|..|....
T Consensus        11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S   83 (91)
T cd05740          11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP------PRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTS   83 (91)
T ss_pred             CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC------CCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence            45678899999999999999 899999999876521      112222 3458999999999999999999999887543


Q ss_pred             -EEEEEE
Q psy15128        123 -RAFLQV  128 (292)
Q Consensus       123 -~~~l~v  128 (292)
                       .+.|.|
T Consensus        84 ~~~~L~V   90 (91)
T cd05740          84 DPYILNV   90 (91)
T ss_pred             eeEEEEe
Confidence             344443

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.46  E-value=6.6e-13  Score=81.41  Aligned_cols=77  Identities=19%  Similarity=0.284  Sum_probs=60.0

Q ss_pred             CcEEEEEEEeee--CCCeeEEEECCeEEeeccCCCcceeEE----eeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEE
Q psy15128         52 GIASFQCVAEGS--PLPSVFWTQEGSQVLMFPGNAYGHLHV----TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF  125 (292)
Q Consensus        52 ~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~  125 (292)
                      +++.|.|.+.+.  +.+.+.|++++..+......  .++..    ...+.|.|.+++..|+|.|+|.|.+..+....++.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~--~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~   78 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDG--DHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAAD   78 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCC--ccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEE
Confidence            468999999774  46789999999987532111  12222    23568999999999999999999999999999999


Q ss_pred             EEEEe
Q psy15128        126 LQVTS  130 (292)
Q Consensus       126 l~v~~  130 (292)
                      |.|.+
T Consensus        79 L~V~~   83 (85)
T cd05853          79 LIVRG   83 (85)
T ss_pred             EEEec
Confidence            88874

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.46  E-value=1.1e-12  Score=80.33  Aligned_cols=71  Identities=15%  Similarity=0.259  Sum_probs=53.0

Q ss_pred             EEEEEeeeCCCeeEEEECCeEEeeccCCCcceeE------EeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128         56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLH------VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  127 (292)
Q Consensus        56 l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~  127 (292)
                      |.|.+.|.|.|.++|+|++..+..... ......      ....+.|.|.+++.+|+|.|+|.|.|..|.......+.
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDY-IRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCc-eeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            689999999999999999987742211 000111      11244799999999999999999999999887766554

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.46  E-value=1.5e-13  Score=85.27  Aligned_cols=73  Identities=14%  Similarity=0.198  Sum_probs=53.2

Q ss_pred             CceEEEeeCCCCCCCC--eEEEeEcCeEeccCC-CceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        214 ETALLECGPPKGQPEP--TLHWKKNGQFIDLES-SKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       214 ~~~~l~C~~~~~~p~~--~~~W~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      +.++|.|.+ .|.|.|  .+.|+++|+++.... ..++.....    ......|.|..++..|+|.|+|.|+|.+|++++
T Consensus         1 ~~~~L~C~a-~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~----~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~   75 (85)
T cd05854           1 ENLTLQCHA-SHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEV----KETIGDLVIVNAQLSHAGTYTCTAQTVVDSASA   75 (85)
T ss_pred             CcEEEEEEE-ecCCCCCeEEEEEECCeEccccCCCCcEEEEEe----cceEeEEEEccCChhhCeEEEEEEecCCCCEEE
Confidence            468999998 888876  689999999885322 222211100    011236899999999999999999999999876


Q ss_pred             C
Q psy15128        291 G  291 (292)
Q Consensus       291 ~  291 (292)
                      +
T Consensus        76 ~   76 (85)
T cd05854          76 S   76 (85)
T ss_pred             E
Confidence            4

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.46  E-value=1.1e-12  Score=79.21  Aligned_cols=72  Identities=15%  Similarity=0.212  Sum_probs=52.6

Q ss_pred             EEEEEeeeCCCeeEEEECCeEEeeccCCCcceeE---EeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128         56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLH---VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  127 (292)
Q Consensus        56 l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~  127 (292)
                      |.|.+.|.|.|.++|+|++..+............   ....+.|.|.++..+|+|.|+|.|.|..|....++.+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            6789999999999999999877421100000000   11245799999999999999999999999877666543

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.45  E-value=7.1e-13  Score=80.54  Aligned_cols=73  Identities=32%  Similarity=0.618  Sum_probs=54.9

Q ss_pred             EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEE-eeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128         54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV-TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  128 (292)
Q Consensus        54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v  128 (292)
                      +.|.|.+.|.|.|.+.|+|++.....  .....+... ...+.|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFP--AARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCC--cccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            47899999999999999998764211  111122222 23458999999999999999999999998777777665

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.45  E-value=3.7e-13  Score=87.73  Aligned_cols=76  Identities=21%  Similarity=0.267  Sum_probs=55.1

Q ss_pred             CCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCcccccccccccccccc-ccccceeEEEEeeccccccc
Q psy15128        212 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLG-ALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~a~n~~g~~~~  290 (292)
                      .|..+.|.|.+ .|.|.+.+.|+++|..+... +.++....... .......|.|..+. ..|.|.|+|.|.|.+|+++.
T Consensus        22 ~g~~v~L~C~a-~G~P~p~i~W~k~g~~l~~~-~~r~~~~~~~~-~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~   98 (109)
T cd05773          22 GSSDANLVCQA-QGVPRVQFRWAKNGVPLDLG-NPRYEETTEHT-GTVHTSILTIINVSAALDYALFTCTAHNSLGEDSL   98 (109)
T ss_pred             CCCEEEEEEEC-cccCCCEEEEEECCEECCCC-CCeEEEEeecc-CccceeEEEECcCCccCCCEEEEEEEEeCCccCcE
Confidence            46889999999 89999999999999988532 22332221110 00112468888886 58999999999999999864

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.45  E-value=6.8e-13  Score=81.65  Aligned_cols=69  Identities=19%  Similarity=0.375  Sum_probs=55.9

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      |....+..|+++.|.|.+ .+ |.+.+.|++||++|.... .++.+.++         .|.|.+++..|+|.|+|.|.+.
T Consensus         3 P~~~~v~~G~~v~L~C~~-~~-~~~~i~W~~ng~~i~~~~-~r~~~~~~---------~L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873           3 PRQRTFKLGNNAELKCSP-KS-NLARVVWKFDGKVLTPES-AKYLLYRD---------GLLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             cceEEEECCCCEEEEEEC-CC-CCCeEEEEECCEECCCCC-ceEEEECC---------cEEEeCCCHHHCEEEEEEEEec
Confidence            567889999999999997 44 678999999999996432 34544433         5889999999999999999987


Q ss_pred             c
Q psy15128        285 R  285 (292)
Q Consensus       285 ~  285 (292)
                      .
T Consensus        71 ~   71 (87)
T cd05873          71 S   71 (87)
T ss_pred             c
Confidence            4

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.45  E-value=8.8e-13  Score=83.02  Aligned_cols=77  Identities=23%  Similarity=0.353  Sum_probs=55.9

Q ss_pred             CCcEEEEEEEeeeCCCeeEEEECC----eEEeeccCCCcce--------eEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128         51 NGIASFQCVAEGSPLPSVFWTQEG----SQVLMFPGNAYGH--------LHVTQEGTLRIQGVQKEDAGFFVCSALSVAG  118 (292)
Q Consensus        51 g~~~~l~C~~~~~~~~~v~W~~~~----~~~~~~~~~~~~~--------~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~  118 (292)
                      |+.++|.|.+.|.|.|.|+|+|++    ..+. ..+.....        ........|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYG-PDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeC-CCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence            678999999999999999999964    2211 00000000        0011234799999999999999999999999


Q ss_pred             CeeEEEEEEE
Q psy15128        119 STTVRAFLQV  128 (292)
Q Consensus       119 ~~~~~~~l~v  128 (292)
                      ....++.|.|
T Consensus        80 ~~~~sa~L~V   89 (90)
T cd04974          80 PSHHSAWLTV   89 (90)
T ss_pred             cccCCEEEEe
Confidence            8888877765

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.45  E-value=1.4e-12  Score=84.98  Aligned_cols=79  Identities=23%  Similarity=0.335  Sum_probs=59.0

Q ss_pred             cCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEE----eeecEEEEccCC-CCCCeEEEEEEEeCCcCeeEEE
Q psy15128         50 LNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV----TQEGTLRIQGVQ-KEDAGFFVCSALSVAGSTTVRA  124 (292)
Q Consensus        50 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~-~~d~g~Y~C~~~~~~~~~~~~~  124 (292)
                      .|..+.|.|.+.|.|.+.+.|++++..+.... ..+.....    ...+.|+|.++. .+|.|.|+|.|.|..|.....+
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~-~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i  100 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGN-PRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDI  100 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEECCEECCCCC-CeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEE
Confidence            45789999999999999999999998763221 11110001    113579999997 5899999999999999988777


Q ss_pred             EEEEE
Q psy15128        125 FLQVT  129 (292)
Q Consensus       125 ~l~v~  129 (292)
                      .|.+.
T Consensus       101 ~L~~~  105 (109)
T cd05773         101 QLVST  105 (109)
T ss_pred             EEEec
Confidence            77665

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.45  E-value=5.8e-13  Score=83.13  Aligned_cols=77  Identities=14%  Similarity=0.241  Sum_probs=59.8

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCce-EEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKR-VSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      ....+.+|+.+.|.|....+.|.+.+.|++++.++....+.+ +....+|        .|.+..+...|+|.|.|.|+|.
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G--------~L~fs~v~~~D~g~Y~C~A~n~   82 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNG--------NLYIAKVEASDRGNYSCFVSSP   82 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCC--------cEEEeecCHhhCceeEEEEEec
Confidence            456788999999999988899999999999987653222333 3222233        5889999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      ++....
T Consensus        83 ~~~~~~   88 (96)
T cd05727          83 SSTKSV   88 (96)
T ss_pred             ccCCcc
Confidence            877643

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.44  E-value=3.1e-13  Score=85.33  Aligned_cols=75  Identities=15%  Similarity=0.182  Sum_probs=57.8

Q ss_pred             cceEEeCCCceEEEeeCCCC-----CCCCeEEEeEcCeEeccC--CCceEEecCCCccccccccccccccccccccceeE
Q psy15128        206 KDTRVASGETALLECGPPKG-----QPEPTLHWKKNGQFIDLE--SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWK  278 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~-----~p~~~~~W~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~  278 (292)
                      ....+.+|+.+.|.|.+ .+     .|.+.+.|+|+|..+...  ...++...+         ..|.|..+..+|+|.|.
T Consensus         7 ~~~~v~~G~~~~L~C~~-~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~---------~~L~I~~~~~~DsG~Y~   76 (94)
T cd05756           7 KKSYVLEGEPVVIKCPL-FYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQK---------DLLWFLPAALEDSGLYT   76 (94)
T ss_pred             eEEEEecCCCeEEECCC-CCcccccCCCceEEEEEcCCCCcccccccceeeecC---------CeEEEccCCcccCeEEE
Confidence            45677899999999998 66     688899999998765321  122332211         26889999999999999


Q ss_pred             EEEeeccccccc
Q psy15128        279 LIAKNIRNQQQH  290 (292)
Q Consensus       279 C~a~n~~g~~~~  290 (292)
                      |.|+|..|..+.
T Consensus        77 C~~~N~~g~~~~   88 (94)
T cd05756          77 CVVRNSTYCMKV   88 (94)
T ss_pred             EEEcCCCccEEE
Confidence            999999998764

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.44  E-value=2.5e-13  Score=80.60  Aligned_cols=62  Identities=15%  Similarity=0.123  Sum_probs=48.5

Q ss_pred             eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128        216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      +.|+|.+ .|.|+|.+.|+|+|.++... ..++...         ...|.|..+..+|+|.|+|.|+|.....
T Consensus         1 ~~l~c~v-~g~P~P~v~W~kdg~~l~~~-~~~~~~~---------~~~L~I~~v~~~D~G~YtC~a~~~~~~~   62 (72)
T cd07702           1 YRLTPKV-KAFPAPEVIWLKDGLPAAEK-CSRYHVD---------GYSLVIKDVTEEDAGIYTILLGIKQYNL   62 (72)
T ss_pred             CeEEeeE-EEcCCCeEEEEECCEECCCC-CcEEEeC---------CCEEEECcCCHHHCEEEEEEEEccccce
Confidence            4799998 89999999999999988532 1233221         1258899999999999999999986543

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>KOG3515|consensus

Probab=99.43  E-value=9.9e-13  Score=109.42  Aligned_cols=275  Identities=17%  Similarity=0.172  Sum_probs=152.7

Q ss_pred             cccCCcCCCeeEEEEEEeccccc--ccccEEEEEeCCCc-EEe--CCCccEEecCCcEEEEEEEee-eCCCeeEEEECCe
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGER--ETKPALLTVHAPPS-FVV--RPQDQKVGLNGIASFQCVAEG-SPLPSVFWTQEGS   75 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~--~~~~~~l~v~~~p~-~~~--~~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~   75 (292)
                      +...+.+|.|.|+|.+.+.+...  ......+.+..+.. +..  ......+.+|+.+.|.|.+.+ .|.+.++|+++..
T Consensus       167 ~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~  246 (741)
T KOG3515|consen  167 QTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSR  246 (741)
T ss_pred             eEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccc
Confidence            34567889999999998853222  22224444443322 111  223356788999999996654 6888999999887


Q ss_pred             EEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEE
Q psy15128         76 QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAF  155 (292)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~  155 (292)
                      .....+..............+.+..-..++.....|.+.| ....  ...+.+..    ++-...+.+....+..|++..
T Consensus       247 ~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~~~--~~~tav~~----~~~~~~Ist~~~~ls~g~s~r  319 (741)
T KOG3515|consen  247 PQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LLAA--SQITAVQV----KPTAVPISTSDSGLSSGRSAR  319 (741)
T ss_pred             cchhhhcccCCCCCCcccccccccccccchhhhhhccccC-cccc--ceeeeccc----ccccccccCcccccccccccc
Confidence            6543210000000011122444554555556677899987 1111  11122211    122222233334477899999


Q ss_pred             EEeEe-ccCCCCceEEEeCCeeCCCCCccEEEcC-CC-----cEEEEeeecCCCC-------------------------
Q psy15128        156 LPCQA-VGSPPPHIRWYKNGNSLPPEDTRINVSS-SG-----SLQIDVLRDDFRA-------------------------  203 (292)
Q Consensus       156 l~C~~-~~~p~~~~~W~~~~~~l~~~~~~~~~~~-~~-----~l~i~~~~~~d~g-------------------------  203 (292)
                      +.|.. .++|.+.+.|+|+............... .+     .+........|.|                         
T Consensus       320 ~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~  399 (741)
T KOG3515|consen  320 SSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLP  399 (741)
T ss_pred             cceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccccC
Confidence            99986 5557888999996544432211000000 00     1122222222333                         


Q ss_pred             -------CCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccce
Q psy15128        204 -------EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQ  276 (292)
Q Consensus       204 -------~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~  276 (292)
                             ........+++.....-.+...++.+.+.|++.+.++....+..+.+.....       ...+..+...|.|.
T Consensus       400 ~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~-------~~s~~~v~~~d~g~  472 (741)
T KOG3515|consen  400 SPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAG-------LGSGVNVSRSDGGS  472 (741)
T ss_pred             CchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCceEEeecccc-------ccccceeeeccCCc
Confidence                   1133334455555555554344556799999999888655555555444432       23355688999999


Q ss_pred             eEEEEeeccccccc
Q psy15128        277 WKLIAKNIRNQQQH  290 (292)
Q Consensus       277 y~C~a~n~~g~~~~  290 (292)
                      |.|.|+|..|.+..
T Consensus       473 y~~tatns~gg~~~  486 (741)
T KOG3515|consen  473 YGLTATNSPGGAQA  486 (741)
T ss_pred             ceeeeccCCCceee
Confidence            99999999998753

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.43  E-value=3e-12  Score=81.67  Aligned_cols=78  Identities=29%  Similarity=0.532  Sum_probs=58.3

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccC-----CCCCCeEEEEEEE
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGV-----QKEDAGFFVCSAL  114 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~g~Y~C~~~  114 (292)
                      ...|....+.+|+++.|.|.+.+.|.+.+.|+|++..+....   ..+.....++.|.|..+     ...|.|.|+|.+.
T Consensus         3 ~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~---~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~   79 (95)
T cd05722           3 LSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVS---DERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQ   79 (95)
T ss_pred             EECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECcccc---CcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEE
Confidence            345667778889999999999999999999999998763221   11122333455666665     5889999999999


Q ss_pred             eC-CcCe
Q psy15128        115 SV-AGST  120 (292)
Q Consensus       115 ~~-~~~~  120 (292)
                      |. .|..
T Consensus        80 N~~~G~~   86 (95)
T cd05722          80 NDSLGSI   86 (95)
T ss_pred             CCccCcE
Confidence            98 7765

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.43  E-value=1.6e-12  Score=81.87  Aligned_cols=77  Identities=25%  Similarity=0.351  Sum_probs=55.5

Q ss_pred             CCcEEEEEEEeeeCCCeeEEEECC----eEEeeccCCCccee--------EEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128         51 NGIASFQCVAEGSPLPSVFWTQEG----SQVLMFPGNAYGHL--------HVTQEGTLRIQGVQKEDAGFFVCSALSVAG  118 (292)
Q Consensus        51 g~~~~l~C~~~~~~~~~v~W~~~~----~~~~~~~~~~~~~~--------~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~  118 (292)
                      |+.+.|.|.+.+.|.|.+.|++++    ..+. ..+......        .....+.|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYG-PDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeC-CCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence            678999999999999999999843    2221 010000000        001124799999999999999999999999


Q ss_pred             CeeEEEEEEE
Q psy15128        119 STTVRAFLQV  128 (292)
Q Consensus       119 ~~~~~~~l~v  128 (292)
                      ....++.|.|
T Consensus        80 ~~~~~a~L~V   89 (90)
T cd05858          80 ISHHSAWLTV   89 (90)
T ss_pred             cccceEEEEE
Confidence            8888877765

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.42  E-value=4e-13  Score=83.76  Aligned_cols=73  Identities=16%  Similarity=0.293  Sum_probs=52.6

Q ss_pred             CceEEEeeCCCCCCCC--eEEEeEcCeEeccCCC-ceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        214 ETALLECGPPKGQPEP--TLHWKKNGQFIDLESS-KRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       214 ~~~~l~C~~~~~~p~~--~~~W~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      +.+.|.|.+ .+.|.+  .+.|+++|+++..... .++.....    ......|.|..++..|+|.|+|.|.|.+|.+++
T Consensus         1 e~~~L~C~~-~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~   75 (85)
T cd04970           1 ESITLQCHA-SHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGG----KDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSA   75 (85)
T ss_pred             CcEEEEEEE-ecCCCCCeEEEEEECCeEeeccCCCccEEEEec----ccccceEEEccCCHHhCeeeEEEEecCCCcEEE
Confidence            578999999 788876  6799999998853222 11111000    012236899999999999999999999998765


Q ss_pred             C
Q psy15128        291 G  291 (292)
Q Consensus       291 ~  291 (292)
                      +
T Consensus        76 ~   76 (85)
T cd04970          76 S   76 (85)
T ss_pred             E
Confidence            3

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.42  E-value=1.7e-12  Score=78.74  Aligned_cols=67  Identities=19%  Similarity=0.343  Sum_probs=55.0

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeeeCC-CeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGSPL-PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      |.+.+.|....+.+|++++|.|.+.+.|. ..+.|++++..+.            .....|.|.++ .+|+|.|+|.+.+
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~------------~~~~~l~i~~~-~~dsG~Y~C~a~~   67 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE------------TTTNSYRIRAA-NNDSGEYRCQTQG   67 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee------------ccCCeEEEeec-ccCCEEeEEECCC
Confidence            45566777888999999999999988765 4799999998652            12457899999 9999999999976


Q ss_pred             C
Q psy15128        116 V  116 (292)
Q Consensus       116 ~  116 (292)
                      .
T Consensus        68 ~   68 (78)
T cd05752          68 S   68 (78)
T ss_pred             C
Confidence            4

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.41  E-value=1.5e-11  Score=84.34  Aligned_cols=77  Identities=21%  Similarity=0.422  Sum_probs=60.1

Q ss_pred             EEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CC-CceEEEe
Q psy15128         95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PP-PHIRWYK  172 (292)
Q Consensus        95 ~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~~~W~~  172 (292)
                      .|+|.+++.+|+|.|+|.+.+..+.....+.|.+..     +|.+.+.+.......|+.+.|.|.+.++ |. +.+.|++
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~-----~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~   76 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE-----PPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTR   76 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec-----CCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEE
Confidence            689999999999999999998777777777777653     4555555554444578899999999886 54 4799999


Q ss_pred             CCee
Q psy15128        173 NGNS  176 (292)
Q Consensus       173 ~~~~  176 (292)
                      ++..
T Consensus        77 ~g~~   80 (139)
T cd05771          77 EPPG   80 (139)
T ss_pred             CCCC
Confidence            9864

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.40  E-value=3.2e-12  Score=78.06  Aligned_cols=71  Identities=31%  Similarity=0.534  Sum_probs=56.0

Q ss_pred             eCCCccEEecCCcEEEEEEEeeeCCC-eeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      ..|....+.+|+++.|.|.+.|.|.| .|.|++++..+..    .   . ....+.|.|..+  .|.|.|.|.|+|..|.
T Consensus         3 ~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~----~---~-~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~   72 (81)
T cd05749           3 VEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD----P---P-APSPSVLNVPGL--NETSKFSCEAHNAKGV   72 (81)
T ss_pred             CCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC----C---C-CCCCCEEEEccc--cCCeEEEEEEEeccCc
Confidence            45667888999999999999999999 7999999987632    0   0 112357888876  4789999999999886


Q ss_pred             ee
Q psy15128        120 TT  121 (292)
Q Consensus       120 ~~  121 (292)
                      ..
T Consensus        73 ~~   74 (81)
T cd05749          73 TT   74 (81)
T ss_pred             EE
Confidence            54

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.40  E-value=2.8e-13  Score=84.28  Aligned_cols=75  Identities=16%  Similarity=0.160  Sum_probs=53.5

Q ss_pred             CCceEEEeeCCCCC--CCCeEEEeEcCeEeccCCCce-EEecCCCccccccccccccccccccccceeEEEEeecccccc
Q psy15128        213 GETALLECGPPKGQ--PEPTLHWKKNGQFIDLESSKR-VSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       213 g~~~~l~C~~~~~~--p~~~~~W~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  289 (292)
                      |+.+.|.|.+ .+.  |.+.|.|.++++.+....... ......   .......|.|..++..|+|.|+|.|+|..|+++
T Consensus         1 Ge~~~L~C~~-~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~---~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~   76 (84)
T cd05742           1 GETLVLNCTV-LTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSE---ATELSSTLTIPNATLKDSGTYTCAASSGTMDQK   76 (84)
T ss_pred             CCeEEEEEEE-EeCCCccEEEEEecCCcccCCceEeeccccccc---ceEEEEEEEECCCChhhCEEEEEEEccCCCceE
Confidence            7899999999 777  889999999887653111100 000001   112234799999999999999999999999887


Q ss_pred             cC
Q psy15128        290 HG  291 (292)
Q Consensus       290 ~~  291 (292)
                      .+
T Consensus        77 ~s   78 (84)
T cd05742          77 ES   78 (84)
T ss_pred             EE
Confidence            65

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.39  E-value=7.2e-12  Score=76.33  Aligned_cols=73  Identities=33%  Similarity=0.521  Sum_probs=56.5

Q ss_pred             EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEE-eeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128         54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV-TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus        54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      +.|.|.+.|.|.|.+.|+|++..+...  .. .+... .....|.|.++..+|.|.|+|.+.|..|.....+.|.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~--~~-~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPK--LS-KQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCC--CC-ccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            368999999999999999998865321  11 12222 223479999999999999999999999988877777664

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.39  E-value=1.2e-12  Score=81.08  Aligned_cols=72  Identities=17%  Similarity=0.236  Sum_probs=50.6

Q ss_pred             CCceEEEeeCCCCCCCCeEEEeEcCe---EeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccc
Q psy15128        213 GETALLECGPPKGQPEPTLHWKKNGQ---FIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~~~~W~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  289 (292)
                      |+.+.|.|.+ .|.|.|.+.|++++.   .+.......     ...+.......|.|..+..+|+|.|.|.|.|..|+++
T Consensus         1 G~~v~l~C~~-~g~P~p~v~W~k~~~~~~~~~~~~~~~-----~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   74 (81)
T cd05765           1 GETASFHCDV-TGRPPPEITWEKQVHGKENLIMRPNHV-----RGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLR   74 (81)
T ss_pred             CCcEEEEeec-cccCCCcEEEEecCCCCcceeecCCcc-----cCCEEEccccEEEEccCCcccCEEEEEEEecCCceEE
Confidence            7899999998 899999999999732   111000000     0001111223688999999999999999999999876


Q ss_pred             c
Q psy15128        290 H  290 (292)
Q Consensus       290 ~  290 (292)
                      .
T Consensus        75 ~   75 (81)
T cd05765          75 A   75 (81)
T ss_pred             E
Confidence            4

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.38  E-value=5.1e-12  Score=77.58  Aligned_cols=67  Identities=25%  Similarity=0.574  Sum_probs=50.0

Q ss_pred             EEEEEEEeeeCCCeeEEEECCeEEeecc--C-CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         54 ASFQCVAEGSPLPSVFWTQEGSQVLMFP--G-NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~--~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      ++|.|.+.|.|.|.+.|++++.......  . ....+.....++.|.|.++..+|+|.|.|.|.|..|..
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   70 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGAD   70 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCC
Confidence            4799999999999999999754321110  0 12233444456789999999999999999999998865

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.37  E-value=8.5e-13  Score=81.05  Aligned_cols=65  Identities=18%  Similarity=0.275  Sum_probs=47.4

Q ss_pred             eEEEeeCCCCCCCCeEEEeEcCeEeccC------CCceEEecCCCccccccccccccccccccccceeEEEEeecccccc
Q psy15128        216 ALLECGPPKGQPEPTLHWKKNGQFIDLE------SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  289 (292)
                      ++|.|.+ .|.|.|.+.|++++......      ...++...        ....|.|..+..+|+|.|.|.|.|..|.+.
T Consensus         1 v~l~C~~-~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   71 (79)
T cd05734           1 VTLNCSA-EGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL--------SNGSLLIKHVLEEDSGYYLCKVSNDVGADA   71 (79)
T ss_pred             CEeEeeC-eEeCCCEEEEEECCCccccccccccccCCCEEEe--------cCCeEEECcCCcccCEEEEEEEEeCCCCCC
Confidence            5799998 89999999999964321100      11222222        223688999999999999999999999874

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.37  E-value=4.6e-12  Score=78.79  Aligned_cols=78  Identities=15%  Similarity=0.139  Sum_probs=56.6

Q ss_pred             CCcEEEEEEEeee--CCCeeEEEECCeEEeeccC---CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEE
Q psy15128         51 NGIASFQCVAEGS--PLPSVFWTQEGSQVLMFPG---NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF  125 (292)
Q Consensus        51 g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~  125 (292)
                      |+.+.|.|.+.+.  |.+.+.|++++........   ...........+.|.|.+++.+|+|.|+|.+.|..+....++.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            6889999999998  7889999987654321100   0000111223458999999999999999999999888777777


Q ss_pred             EEE
Q psy15128        126 LQV  128 (292)
Q Consensus       126 l~v  128 (292)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            654

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.37  E-value=2.6e-12  Score=80.89  Aligned_cols=74  Identities=16%  Similarity=0.282  Sum_probs=55.7

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCC--CceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES--SKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK  282 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~  282 (292)
                      +....+.+|+.+.|.|.+ .+ |.+.+.|++++..+....  ..++....         ..|.|..+..+|+|.|.|.|.
T Consensus         3 ~~~~~v~~g~~v~L~C~~-~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~---------~~L~I~~~~~~D~G~Y~C~a~   71 (89)
T cd04979           3 EKVVTVVEGNSVFLECSP-KS-NLASVVWLFQGGPLQRKEEPEERLLVTE---------DGLLIRSVSPADAGVYTCQSV   71 (89)
T ss_pred             ceEEEEECCCcEEEEEeC-CC-CCceEEEEECCcccccccCcCceEEEcC---------CCEEEccCCHHHCEEEEEEEe
Confidence            346678999999999997 56 778999999998764322  12333322         248899999999999999999


Q ss_pred             ecccccc
Q psy15128        283 NIRNQQQ  289 (292)
Q Consensus       283 n~~g~~~  289 (292)
                      |..+...
T Consensus        72 ~~~~~~~   78 (89)
T cd04979          72 EHGFKQT   78 (89)
T ss_pred             cCcccee
Confidence            8776543

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.37  E-value=1.6e-11  Score=77.51  Aligned_cols=72  Identities=25%  Similarity=0.483  Sum_probs=53.6

Q ss_pred             CccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCC---CcceeEEe----eecEEEEccCCCCCCeEEEEEEEe
Q psy15128         44 QDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGN---AYGHLHVT----QEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~---~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      .+..+.+|+++.|.|.+.+.|.+.+.|++++..+......   ...+....    ....|.|.+++.+|.|.|+|.+..
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            4677899999999999999999999999987644221111   01222211    235899999999999999999986

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.37  E-value=8.4e-12  Score=77.27  Aligned_cols=77  Identities=18%  Similarity=0.302  Sum_probs=52.7

Q ss_pred             CCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCccee---EEeeecEEEEccCCCCCCeEEEEEEEeCCc--CeeEEEE
Q psy15128         51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHL---HVTQEGTLRIQGVQKEDAGFFVCSALSVAG--STTVRAF  125 (292)
Q Consensus        51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~--~~~~~~~  125 (292)
                      |++++|.|.+.+.|.+.+.|++.++...... ......   .......|.|.+++.+|+|.|+|.+.+..+  .....+.
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~   79 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGI-PEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN   79 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCc-eEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence            7899999999998889999998765321000 000001   112245899999999999999999998765  3444444


Q ss_pred             EEE
Q psy15128        126 LQV  128 (292)
Q Consensus       126 l~v  128 (292)
                      |+|
T Consensus        80 i~V   82 (84)
T cd05861          80 ITV   82 (84)
T ss_pred             EEE
Confidence            444

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.37  E-value=2e-12  Score=80.64  Aligned_cols=74  Identities=14%  Similarity=0.188  Sum_probs=57.7

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +....+.+|+.++|.|.+..+.|.+.+.|++++..++..    .. .        ....|.|..+..+|+|.|.|.|.|.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~----~~-~--------~~~~L~I~~v~~~DsG~Y~C~a~n~   74 (85)
T cd05754           8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR----AM-D--------FNGILTIRNVQLSDAGTYVCTGSNM   74 (85)
T ss_pred             CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc----cc-c--------cCCEEEECCCCHHHCEEEEEEEecc
Confidence            456688999999999998445788899999988665311    11 0        1226889999999999999999999


Q ss_pred             ccccccC
Q psy15128        285 RNQQQHG  291 (292)
Q Consensus       285 ~g~~~~~  291 (292)
                      .|....+
T Consensus        75 ~g~~~~~   81 (85)
T cd05754          75 LDTDEAT   81 (85)
T ss_pred             CCeEeEE
Confidence            9988653

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.37  E-value=3.9e-12  Score=80.12  Aligned_cols=83  Identities=13%  Similarity=0.166  Sum_probs=61.3

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccc-cceeEEEEee
Q psy15128        206 KDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALS-DDQWKLIAKN  283 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~C~a~n  283 (292)
                      ....+.+|+.++|.|.+ .+.|+| .|.|..++..|......++.+..... .......|.|..+...| .|.|.|.|.|
T Consensus         9 ~s~~~~~G~~~~L~C~~-~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~-~~g~~S~L~I~~~~~~d~~g~Y~C~a~N   86 (98)
T cd05898           9 QVQYAVRGERGKVKCFI-GSTPPPDRIAWAWKENVLESGTSERYTVERTST-GSGVLSTLTINNIMEADFQTHYNCTAWN   86 (98)
T ss_pred             ceEEEeCCCcEEEEEEE-ccCCCCcEEEEEEccccccCCCCCCEEEEEEcc-CCCcEEEEEECCCccccCCcEEEEEEEe
Confidence            45678899999999998 566665 78998888877544445655543321 12344579999988777 7899999999


Q ss_pred             ccccccc
Q psy15128        284 IRNQQQH  290 (292)
Q Consensus       284 ~~g~~~~  290 (292)
                      ..|+++.
T Consensus        87 ~~G~d~~   93 (98)
T cd05898          87 SFGSGTA   93 (98)
T ss_pred             CCccceE
Confidence            9999864

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.36  E-value=1.9e-12  Score=81.13  Aligned_cols=73  Identities=10%  Similarity=0.162  Sum_probs=56.2

Q ss_pred             ceEEeCCCceEEEeeCCCCC----CCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128        207 DTRVASGETALLECGPPKGQ----PEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK  282 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~----p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~  282 (292)
                      ...+.+|..+.|.|.+..+.    |.+.+.|+|+++++...  .+... .        ...|.|..+..+|+|.|+|.|.
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~--~~~~~-~--------~~~L~I~~v~~~DsG~YtC~~~   72 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGD--RKRFV-K--------GSKLLIQNVTEEDAGNYTCKLT   72 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCC--ccEEe-c--------CCEEEEeeCChhhCEEEEEEEE
Confidence            45678999999999864333    57899999999998522  22221 1        1268899999999999999999


Q ss_pred             eccccccc
Q psy15128        283 NIRNQQQH  290 (292)
Q Consensus       283 n~~g~~~~  290 (292)
                      |.+|....
T Consensus        73 n~~~~~~~   80 (92)
T cd05757          73 FTHNGKQY   80 (92)
T ss_pred             ecCCCEEE
Confidence            99888754

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.36  E-value=5.2e-12  Score=76.88  Aligned_cols=71  Identities=20%  Similarity=0.352  Sum_probs=52.1

Q ss_pred             EEEEEEEee-eCCCeeEEEECCeEEeeccCCCccee-EEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEE
Q psy15128         54 ASFQCVAEG-SPLPSVFWTQEGSQVLMFPGNAYGHL-HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  124 (292)
Q Consensus        54 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~  124 (292)
                      +.|.|.+.+ .|.+.+.|++++..+........... .......|.|.++..+|.|.|+|.+.|..|.....+
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   73 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTA   73 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence            469999999 89999999999887642221110001 112245899999999999999999999998766554

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.32  E-value=4.3e-11  Score=75.59  Aligned_cols=80  Identities=30%  Similarity=0.527  Sum_probs=56.8

Q ss_pred             CcEEeCCCccEEe---cCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCC-CCCCeEEEEE
Q psy15128         37 PSFVVRPQDQKVG---LNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ-KEDAGFFVCS  112 (292)
Q Consensus        37 p~~~~~~~~~~~~---~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~C~  112 (292)
                      |.+...|....+.   .|+.+.|.|.+.|.|.+.++|++++..+.....   ... ....+.|.|.++. .+|+|.|+|.
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~---~~~-~~~~~~L~i~~~~~~~d~G~Y~C~   77 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPD---SRY-SLVGGNLVISNPSKAKDAGRYQCL   77 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCC---CCE-EEECCEEEEecCCccCCCEEEEEE
Confidence            3445555554433   346799999999999999999999987632211   122 2235688898876 5899999999


Q ss_pred             EEeCCcCe
Q psy15128        113 ALSVAGST  120 (292)
Q Consensus       113 ~~~~~~~~  120 (292)
                      +.|..|..
T Consensus        78 a~N~~G~~   85 (91)
T cd04967          78 ASNIVGTV   85 (91)
T ss_pred             EEcCCCEE
Confidence            99988754

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.32  E-value=3.6e-11  Score=74.04  Aligned_cols=70  Identities=20%  Similarity=0.392  Sum_probs=54.8

Q ss_pred             CCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      .|....+..|+++.|.|.+.+ +.+.+.|++++..+....    .+. ...++.|.|.+++.+|+|.|+|.+....
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~----~r~-~~~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPES----AKY-LLYRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCC----ceE-EEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            355678899999999999854 677999999998764221    223 2345689999999999999999998763

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.30  E-value=1.1e-11  Score=75.22  Aligned_cols=61  Identities=20%  Similarity=0.361  Sum_probs=48.4

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCC-CeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128        205 PKDTRVASGETALLECGPPKGQPE-PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN  283 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n  283 (292)
                      |+...+.+|++++|.|.+ .+.|. ..+.|++||+.+..                 ....|.|..+ .+|+|.|+|.|.|
T Consensus         7 P~~~~v~~G~~V~L~C~~-~~~p~~~~~~W~kng~~l~~-----------------~~~~l~i~~~-~~dsG~Y~C~a~~   67 (78)
T cd05752           7 PPWTTIFQGEKVTLTCNG-FNSPEQNSTQWYHNGKLLET-----------------TTNSYRIRAA-NNDSGEYRCQTQG   67 (78)
T ss_pred             CCCeEeeCCCCEEEEEeC-CCCCCCccEEEEECCEEeec-----------------cCCeEEEeec-ccCCEEeEEECCC
Confidence            456788999999999998 67665 47999999988731                 0124667777 9999999999998


Q ss_pred             c
Q psy15128        284 I  284 (292)
Q Consensus       284 ~  284 (292)
                      .
T Consensus        68 ~   68 (78)
T cd05752          68 S   68 (78)
T ss_pred             C
Confidence            6

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.30  E-value=1.7e-11  Score=76.65  Aligned_cols=77  Identities=22%  Similarity=0.393  Sum_probs=56.8

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      ...+..|+.+.|.|.+ .+.|.+.+.|++++..+....  ........    .....|.|..+..+|+|.|.|.|.|..|
T Consensus         3 ~~~~~~G~~~~l~C~~-~~~p~~~v~W~k~~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~~d~g~Y~C~~~n~~g   75 (85)
T cd05729           3 LHAVPAGSTVRLKCPA-SGNPRPTITWLKDGKPFKKEH--RIGGYKVR----KKKWTLILESVVPSDSGKYTCIVENKYG   75 (85)
T ss_pred             eeEecCCCcEEEEEEc-CCCCCCeEEEEECCEECcccC--ceeEEEcc----CcEEEEEEeECCcccCEEEEEEEEECCc
Confidence            3456789999999998 788999999999998875222  11111100    1122577889999999999999999999


Q ss_pred             cccc
Q psy15128        287 QQQH  290 (292)
Q Consensus       287 ~~~~  290 (292)
                      ..+.
T Consensus        76 ~~~~   79 (85)
T cd05729          76 SINH   79 (85)
T ss_pred             eEEE
Confidence            8654

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.30  E-value=5.9e-11  Score=75.23  Aligned_cols=83  Identities=24%  Similarity=0.414  Sum_probs=57.0

Q ss_pred             CCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccC---CCcceeEE----eeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPG---NAYGHLHV----TQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~~----~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      +.++.+.+|+++.|.|.+.+.|.+.+.|++.+..+.....   ....+...    .....|.|.+++.+|+|.|+|.+.+
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t   83 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT   83 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence            3467789999999999999999999999975443322111   11223222    1235899999999999999999987


Q ss_pred             CCcCeeEEEEE
Q psy15128        116 VAGSTTVRAFL  126 (292)
Q Consensus       116 ~~~~~~~~~~l  126 (292)
                      .... ...+.|
T Consensus        84 ~~~~-~~~~~l   93 (95)
T cd07701          84 MPVK-TSKAYL   93 (95)
T ss_pred             ecCc-cEEEEE
Confidence            4322 444444

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.30  E-value=9.4e-11  Score=73.90  Aligned_cols=90  Identities=21%  Similarity=0.286  Sum_probs=62.9

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCC-eeEEEECCeEEeeccCCCcceeEE----eeecEEEEccCCCCC-CeEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHV----TQEGTLRIQGVQKED-AGFF  109 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d-~g~Y  109 (292)
                      ||.+ .......+.+|+.+.|.|.+.+.|.| .+.|.+++..+.......+.....    ...+.|.|.++...| .|.|
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y   80 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY   80 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence            3443 45566778899999999999887776 678988776543221112111111    134589999998766 7999


Q ss_pred             EEEEEeCCcCeeEEEEE
Q psy15128        110 VCSALSVAGSTTVRAFL  126 (292)
Q Consensus       110 ~C~~~~~~~~~~~~~~l  126 (292)
                      .|.|.|..|.....+.|
T Consensus        81 ~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          81 NCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEeCCccceEEEEe
Confidence            99999999988776654

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.29  E-value=1.1e-11  Score=74.59  Aligned_cols=69  Identities=16%  Similarity=0.085  Sum_probs=51.6

Q ss_pred             ceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128        215 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       215 ~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      .+.|+|.+..+.|++.|.|++++++|....   .....++.+  .....|.+...+..|.+.|+|.|.|.++..
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~---~~~~~~~~~--t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKGVI---SQQENGKTV--SVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCCCc---ccccCCceE--EEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            378999998899999999999999995321   111122222  234467888888888999999999999875

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.29  E-value=2.6e-11  Score=75.60  Aligned_cols=77  Identities=31%  Similarity=0.523  Sum_probs=59.8

Q ss_pred             CCCccEEecCCcEEEEEEEee-eCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         42 RPQDQKVGLNGIASFQCVAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      .|....+.+|+.++|.|.+.+ .|.+.+.|++++..+.   ..     .....+.|.|.+++.+|+|.|+|.+.|..|..
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~---~~-----~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~   78 (85)
T cd05754           7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLP---SR-----AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTD   78 (85)
T ss_pred             CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCC---Cc-----ccccCCEEEECCCCHHHCEEEEEEEeccCCeE
Confidence            445667889999999999865 6788999999886532   10     12235689999999999999999999988877


Q ss_pred             eEEEEE
Q psy15128        121 TVRAFL  126 (292)
Q Consensus       121 ~~~~~l  126 (292)
                      ...+.|
T Consensus        79 ~~~~~l   84 (85)
T cd05754          79 EATATL   84 (85)
T ss_pred             eEEEEE
Confidence            665543

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.29  E-value=2.3e-11  Score=74.08  Aligned_cols=66  Identities=24%  Similarity=0.411  Sum_probs=48.7

Q ss_pred             EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCC----CCCeEEEEEEEeCCcCee
Q psy15128         54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQK----EDAGFFVCSALSVAGSTT  121 (292)
Q Consensus        54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~Y~C~~~~~~~~~~  121 (292)
                      +.|.|.+.|.|.|.++|+|++..+.....  .........+.|.|..+..    +|+|.|+|.|.|..|...
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~--~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKD--PRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI   70 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCC--CCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence            47999999999999999999886632211  1111223457888988754    789999999999988643

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.29  E-value=3.5e-11  Score=73.25  Aligned_cols=70  Identities=19%  Similarity=0.328  Sum_probs=50.2

Q ss_pred             EEEEEEEee-eCCCeeEEEECCeEEeeccCCCcceeEE---eeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEE
Q psy15128         54 ASFQCVAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHV---TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  124 (292)
Q Consensus        54 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~  124 (292)
                      +.|.|.+.+ .|.+.+.|++++..+...... ..+...   ...+.|.|.++..+|+|.|+|.+.|..|.....+
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~   74 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKP-DNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA   74 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCC-CceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence            479999864 577899999998876422111 111111   1245799999999999999999999988766554

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.28  E-value=3.3e-11  Score=73.23  Aligned_cols=66  Identities=27%  Similarity=0.437  Sum_probs=48.0

Q ss_pred             EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCC----CCCeEEEEEEEeCCcCee
Q psy15128         54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQK----EDAGFFVCSALSVAGSTT  121 (292)
Q Consensus        54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~Y~C~~~~~~~~~~  121 (292)
                      +.|.|.+.|.|.|.++|+|++..+.....  ........++.|.|..+..    .|.|.|+|.|.|..|...
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~--~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKD--PKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAV   70 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCC--CCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEE
Confidence            47999999999999999999886532211  1112223456888887764    378999999999888644

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.27  E-value=7.2e-11  Score=74.27  Aligned_cols=73  Identities=22%  Similarity=0.312  Sum_probs=53.4

Q ss_pred             CCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG  118 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~  118 (292)
                      +....+.+|+.+.|.|.+.+ |.+.+.|++++..+..... ...+.. .....|.|.+++.+|+|.|.|.+.+..+
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~-~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~~~~~   75 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEE-PEERLL-VTEDGLLIRSVSPADAGVYTCQSVEHGF   75 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccC-cCceEE-EcCCCEEEccCCHHHCEEEEEEEecCcc
Confidence            34567888999999999876 7789999999876532211 011222 2234699999999999999999987644

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.26  E-value=3.1e-11  Score=75.28  Aligned_cols=75  Identities=16%  Similarity=0.280  Sum_probs=60.1

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccc-eeEEEEeec
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDD-QWKLIAKNI  284 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~a~n~  284 (292)
                      ....+.+|+.+.|.|..-.|.|.|.|.|++++.... ..+.|+.+..+|        .|.|..+...|+| .|.|.|+|.
T Consensus        11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i-~~~~Ri~~~~~G--------nL~fs~v~~~D~g~~Y~C~a~~~   81 (95)
T cd05845          11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHI-TQDERVSMGQNG--------NLYFANVEEQDSHPDYICHAHFP   81 (95)
T ss_pred             ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccc-cccccEEECCCc--------eEEEEEEehhhCCCCeEEEEEcc
Confidence            567889999999999755899999999998765432 245666665554        5889999999999 899999999


Q ss_pred             ccccc
Q psy15128        285 RNQQQ  289 (292)
Q Consensus       285 ~g~~~  289 (292)
                      +....
T Consensus        82 ~~~~~   86 (95)
T cd05845          82 GLRTI   86 (95)
T ss_pred             cccce
Confidence            87653

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.26  E-value=2.6e-11  Score=74.78  Aligned_cols=68  Identities=12%  Similarity=0.103  Sum_probs=53.4

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      ...+.+|+.++|.|.+..+.+...+.|+++|+.+....               ....|.|..++.+|+|.|+|.|.|..|
T Consensus         8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~---------------~~~~l~I~~~~~~dsG~Y~C~~~~~~~   72 (83)
T cd05753           8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH---------------SNSNLSIPQATLSDSGSYHCSGIIGSY   72 (83)
T ss_pred             cceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC---------------CCceEEECccCHHHCEEEEEEEEeCCc
Confidence            44688999999999974456777999999998663110               112588999999999999999999998


Q ss_pred             ccc
Q psy15128        287 QQQ  289 (292)
Q Consensus       287 ~~~  289 (292)
                      ...
T Consensus        73 ~~~   75 (83)
T cd05753          73 DYS   75 (83)
T ss_pred             eec
Confidence            543

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.26  E-value=5e-11  Score=72.44  Aligned_cols=66  Identities=24%  Similarity=0.398  Sum_probs=47.7

Q ss_pred             EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCC----CCCCeEEEEEEEeCCcCee
Q psy15128         54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ----KEDAGFFVCSALSVAGSTT  121 (292)
Q Consensus        54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~d~g~Y~C~~~~~~~~~~  121 (292)
                      +.|.|.+.|.|.|.++|+|++..+.......  ......++.|.|..+.    .+|+|.|+|.|.|..|...
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~--~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPR--VSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL   70 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCc--EEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence            4799999999999999999998653222211  1122345688888764    2469999999999988654

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.25  E-value=8.3e-11  Score=73.76  Aligned_cols=77  Identities=19%  Similarity=0.219  Sum_probs=57.9

Q ss_pred             cEEecCCcEEEEEEEeee-----CCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         46 QKVGLNGIASFQCVAEGS-----PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      ..+.+|+++.|.|...+.     |.+.+.|+|++..+...     . ......+.|.|.++..+|+|.|+|.+.+..+..
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~-----~-~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~   78 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGD-----R-KRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGK   78 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCC-----c-cEEecCCEEEEeeCChhhCEEEEEEEEecCCCE
Confidence            457789999999987542     56799999999876311     1 112256799999999999999999999987776


Q ss_pred             eEEEEEEE
Q psy15128        121 TVRAFLQV  128 (292)
Q Consensus       121 ~~~~~l~v  128 (292)
                      ...+...+
T Consensus        79 ~~~~t~t~   86 (92)
T cd05757          79 QYNVTRTI   86 (92)
T ss_pred             EEEEEEEE
Confidence            65555444

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.24  E-value=1.1e-10  Score=72.91  Aligned_cols=81  Identities=21%  Similarity=0.327  Sum_probs=57.9

Q ss_pred             cEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEE
Q psy15128         46 QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF  125 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~  125 (292)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+..... ............|.|.++..+|.|.|.|.+.|..|....+..
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~   82 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHR-IGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYK   82 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCc-eeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEE
Confidence            3456799999999999999999999999876531110 000001122347999999999999999999998877655555


Q ss_pred             EE
Q psy15128        126 LQ  127 (292)
Q Consensus       126 l~  127 (292)
                      |.
T Consensus        83 l~   84 (85)
T cd05729          83 VD   84 (85)
T ss_pred             Ee
Confidence            43

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>PHA03376 BARF1; Provisional

Probab=99.24  E-value=9.4e-10  Score=75.43  Aligned_cols=125  Identities=18%  Similarity=0.268  Sum_probs=76.1

Q ss_pred             ccEEecCCcEEEEEEEee---eCCCeeEEEECC----eEEee--------ccCCCcceeEE---eeecEEEEccCCCCCC
Q psy15128         45 DQKVGLNGIASFQCVAEG---SPLPSVFWTQEG----SQVLM--------FPGNAYGHLHV---TQEGTLRIQGVQKEDA  106 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~---~~~~~v~W~~~~----~~~~~--------~~~~~~~~~~~---~~~~~l~i~~~~~~d~  106 (292)
                      .+....|+.+.|.|...-   .+.-.|.|+|.+    .-+..        .+-...++..+   .++-.|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            456778999999997752   134479999942    11111        11122233333   3345899999999999


Q ss_pred             eEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCC
Q psy15128        107 GFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNG  174 (292)
Q Consensus       107 g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~  174 (292)
                      |.|+|.+............+++..     +...++.........-+..++.|.+.++|.|.+.|..+.
T Consensus       100 GtY~C~fQkge~~~~k~ehLt~V~-----~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~  162 (221)
T PHA03376        100 GNYLCRMKLGETEVTKQEHLSVVK-----PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPE  162 (221)
T ss_pred             ceEEEEEEcCCCceeeeeeeeeee-----cceEEEEeccccCCCCCeeEEEEecCCcCCchheecccc
Confidence            999999986444333333333321     222222222222222456789999889999999999753

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.24  E-value=5.5e-11  Score=74.54  Aligned_cols=81  Identities=19%  Similarity=0.199  Sum_probs=54.5

Q ss_pred             eEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEec----CCCcccc------cccccccccccccccccee
Q psy15128        208 TRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSIL----GDPWFDS------RRSRSIFGSVLGALSDDQW  277 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~----~~~~~~~------~~~~~l~i~~~~~~~~g~y  277 (292)
                      +.+.+|+.|+|.|.+ .+.+.+.+.|+++++........++...    ..+.+..      .....|.|..+..+|+|+|
T Consensus         2 v~~~~G~~VtL~C~~-s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY   80 (94)
T cd07690           2 VLGKKGDTAELPCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY   80 (94)
T ss_pred             eEeeCCCCEEEEEEe-CCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence            457899999999998 6788899999987643211111222110    0111111      1123599999999999999


Q ss_pred             EEEEeecccccc
Q psy15128        278 KLIAKNIRNQQQ  289 (292)
Q Consensus       278 ~C~a~n~~g~~~  289 (292)
                      +|.|.|..++..
T Consensus        81 ~C~v~~~~~~~~   92 (94)
T cd07690          81 ICEVEDKKEEVE   92 (94)
T ss_pred             EEEECCccceEE
Confidence            999999988753

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.23  E-value=4.7e-11  Score=69.89  Aligned_cols=63  Identities=22%  Similarity=0.488  Sum_probs=49.2

Q ss_pred             CCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        212 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      +|+.+.|.|.+ .+.|.+.+.|++++..+.  ......         .....|.|..+...|+|.|+|.|.|..|
T Consensus         1 ~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~--~~~~~~---------~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPA-EGDPVPNITWLKDGKPLP--ESNRLS---------ASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeC-ccCCCCeEEEEECCEECC--CCCEEe---------cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            48899999997 788889999999998774  111111         1223688889999999999999999876

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.23  E-value=3.1e-11  Score=76.16  Aligned_cols=74  Identities=20%  Similarity=0.295  Sum_probs=53.5

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccC------CCceEEecCCCccccccccccccccccccccceeEE
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLE------SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKL  279 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C  279 (292)
                      .+..+.+|+++.|.|.+ .+.|.+.+.|++++..+...      ...++.+....    .....|.|..+..+|+|.|+|
T Consensus         5 ~~~tv~~G~tv~L~C~v-~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~~L~I~nV~~~D~G~YtC   79 (95)
T cd05882           5 QDETVAVGGTVTLKCGV-KEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKST----PTELIISISNVQLSDEGEYTC   79 (95)
T ss_pred             ccEEEecCCcEEEEEEE-eCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCC----CceEEEEECCCCcccCEEEEE
Confidence            46789999999999998 88999999999987643111      11222221111    112469999999999999999


Q ss_pred             EEeec
Q psy15128        280 IAKNI  284 (292)
Q Consensus       280 ~a~n~  284 (292)
                      .|...
T Consensus        80 ~~~t~   84 (95)
T cd05882          80 SIFTM   84 (95)
T ss_pred             EEEee
Confidence            99873

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.23  E-value=3.2e-11  Score=74.67  Aligned_cols=68  Identities=15%  Similarity=0.206  Sum_probs=48.7

Q ss_pred             CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCc--eEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSK--RVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      |++++|.|.+ .+.|.+.+.|+++++........  +..+..     ......|.|..++.+|+|.|.|.|+|..+
T Consensus         1 Ge~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-----~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~   70 (84)
T cd05861           1 GETITVNCIV-QGNEVVDFSWTYPGKDIGKGIPEVEEVKVPA-----TTLRSTLTFPHATVEDSGTYECAAHESTQ   70 (84)
T ss_pred             CCcEEEEEEE-ECCCccEEEEEECCccCCCCceEEEEEecCC-----cEEEEEEEECCCCcCCCEEEEEEEEECcc
Confidence            7899999998 78899999999877643110000  111111     11234799999999999999999999876

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.23  E-value=6.7e-11  Score=72.96  Aligned_cols=65  Identities=17%  Similarity=0.222  Sum_probs=51.5

Q ss_pred             ccEEecCCcEEEEEEEee-eCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         45 DQKVGLNGIASFQCVAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      ...+.+|+.++|.|.+.+ .+...+.|+|++..+..          ......|.|.+++.+|+|.|+|.+.+..+.
T Consensus         8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~----------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~   73 (83)
T cd05753           8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY----------SHSNSNLSIPQATLSDSGSYHCSGIIGSYD   73 (83)
T ss_pred             cceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc----------cCCCceEEECccCHHHCEEEEEEEEeCCce
Confidence            446889999999999854 45668999999876521          112458999999999999999999987763

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.18  E-value=3.2e-10  Score=71.14  Aligned_cols=81  Identities=23%  Similarity=0.294  Sum_probs=52.8

Q ss_pred             cEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccC-CCcceeEEeeecEEEEccCCCCCCeEEEEEEEe-CCcCeeEE
Q psy15128         46 QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPG-NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS-VAGSTTVR  123 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~-~~~~~~~~  123 (292)
                      +...+|+.++|.|.. +.|.+.+.|++.......... ....+.. ...+.|.|.+++.+|+|.|+|.+.+ ..+.....
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~-~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~   83 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLI-HTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAK   83 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEE-EecCeEEEeeCChhHCEEEEEEEEccCCeEEEEE
Confidence            457789999999996 478889999984322110000 0112222 2346799999999999999999984 44434444


Q ss_pred             EEEEE
Q psy15128        124 AFLQV  128 (292)
Q Consensus       124 ~~l~v  128 (292)
                      +.|.|
T Consensus        84 ~~l~v   88 (91)
T cd05871          84 YTLHV   88 (91)
T ss_pred             EEEEE
Confidence            44444

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.16  E-value=4.3e-10  Score=67.71  Aligned_cols=67  Identities=16%  Similarity=0.301  Sum_probs=50.0

Q ss_pred             EEEEEEEee-eCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         54 ASFQCVAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        54 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      +.|+|...+ .|++.|.||+++..+............+...+.|.+.....+|.+.|+|+|.|..+..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            689998765 6899999999999874322111122233445689999999999999999999987654

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.16  E-value=8e-10  Score=70.41  Aligned_cols=83  Identities=24%  Similarity=0.407  Sum_probs=55.4

Q ss_pred             CCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccC---CCcceeEE----eeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPG---NAYGHLHV----TQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~~----~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      +....+.+|++++|.|.+.+.+.+.+.|++.+........   ....++..    .....|+|.+++.+|+|.|+|.+..
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   83 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT   83 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence            3456788999999999998877889999874433221111   01122222    1234799999999999999999986


Q ss_pred             CCcCeeEEEEE
Q psy15128        116 VAGSTTVRAFL  126 (292)
Q Consensus       116 ~~~~~~~~~~l  126 (292)
                      ... ....+.|
T Consensus        84 ~~~-~~~~~~~   93 (95)
T cd05717          84 MPV-QTAKATV   93 (95)
T ss_pred             CCC-ceEEEEE
Confidence            542 3444444

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.14  E-value=3.5e-10  Score=66.09  Aligned_cols=62  Identities=29%  Similarity=0.542  Sum_probs=49.2

Q ss_pred             cCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         50 LNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        50 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      +|+.++|.|.+.+.+.+.+.|++++..+.      ...........|.|.++...|+|.|+|.+.+..
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~------~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~   62 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP------ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSA   62 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECC------CCCEEecCCcEEEEeeCCcccCEEEEEEEecCC
Confidence            47889999998888888999999887653      111223345689999999999999999998754

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.13  E-value=2.3e-10  Score=71.55  Aligned_cols=74  Identities=19%  Similarity=0.181  Sum_probs=55.6

Q ss_pred             CccEEecCCcEEEEEEE-eeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         44 QDQKVGLNGIASFQCVA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      ....+.+|+.+.|.|.. .+.|.+.|.|++++.......  ...+.....++.|.|.+++.+|+|.|+|.|.|....
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~--d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~   85 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPE--DGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST   85 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCccccccc--CCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence            34568889999999965 567899999999976532221  112233334789999999999999999999987544

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=99.12  E-value=5.8e-10  Score=69.94  Aligned_cols=83  Identities=13%  Similarity=0.126  Sum_probs=56.6

Q ss_pred             ccEEecCCcEEEEEEEee-----------eCCCeeEEEECCeEEeeccCCCcc-eeEEeeecEEEEccCCCCCCeEEEEE
Q psy15128         45 DQKVGLNGIASFQCVAEG-----------SPLPSVFWTQEGSQVLMFPGNAYG-HLHVTQEGTLRIQGVQKEDAGFFVCS  112 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~-----------~~~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~Y~C~  112 (292)
                      ...+.+|+.+.|.|....           .....+.|+|++............ .........|.|.++..+|+|.|+|.
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~   88 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV   88 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence            456889999999998621           123379999997544322111111 12233466899999999999999999


Q ss_pred             EEeCCcCeeEEEEEE
Q psy15128        113 ALSVAGSTTVRAFLQ  127 (292)
Q Consensus       113 ~~~~~~~~~~~~~l~  127 (292)
                      ++|........+.|+
T Consensus        89 ~rN~t~C~~~~i~l~  103 (104)
T cd05896          89 LRNSTYCMKVSMSLT  103 (104)
T ss_pred             ECCCCcceEEEEEEE
Confidence            998876666655554

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.12  E-value=9.2e-10  Score=68.39  Aligned_cols=79  Identities=19%  Similarity=0.188  Sum_probs=54.1

Q ss_pred             CCcEEEEEEEeeeC--CCeeEEEECCeEEeeccCCC----cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEE
Q psy15128         51 NGIASFQCVAEGSP--LPSVFWTQEGSQVLMFPGNA----YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  124 (292)
Q Consensus        51 g~~~~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~  124 (292)
                      |+++.|.|.+.+.+  ...+.|.+.+..........    .........+.|.|.+++..|+|.|+|.+.|..+......
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            78899999998754  44789988775432111001    0111122356899999999999999999999877666666


Q ss_pred             EEEEE
Q psy15128        125 FLQVT  129 (292)
Q Consensus       125 ~l~v~  129 (292)
                      .|.|.
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            66553

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.12  E-value=1.1e-09  Score=67.40  Aligned_cols=61  Identities=31%  Similarity=0.565  Sum_probs=49.7

Q ss_pred             cEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128         46 QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG  118 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~  118 (292)
                      ..+.+|+.+.|.|.+.+.|...+.|++++..+..            ....+.+..+..+|.|.|+|.+.+..+
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~------------~~~~~~~~~~~~~~~g~y~C~~~~~~~   69 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINS------------SQNGLFIPNVSPEDSGNYTCRASNGSG   69 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEE------------ESSEEEESSEEGGGTEEEEEEEEETTE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeee------------eeeeeeeeeeccccCEEEEEEEEeCCC
Confidence            5688999999999999888889999998876631            111277788999999999999998544

...

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.11  E-value=1.8e-10  Score=72.06  Aligned_cols=75  Identities=11%  Similarity=0.168  Sum_probs=54.0

Q ss_pred             ceEEeCCCceEEEeeCCCC----CCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128        207 DTRVASGETALLECGPPKG----QPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK  282 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~----~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~  282 (292)
                      ...+..|.+..|.|.-..+    .+.+.+.|+|+++++... ..+.....+       ...|.|..+..+|+|.|+|.|+
T Consensus         4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~-~~~~~~~~~-------~~~L~I~~v~~~D~G~YtC~~~   75 (95)
T cd05897           4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKD-NEKFYSLKG-------STYLHIIDVSLNDSGYYTCKLQ   75 (95)
T ss_pred             eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCC-CcceEecCC-------CCEEEEEEcChhhCEEEEEEEE
Confidence            3456789999999972223    366799999999988532 222222111       1248899999999999999999


Q ss_pred             ecccccc
Q psy15128        283 NIRNQQQ  289 (292)
Q Consensus       283 n~~g~~~  289 (292)
                      |.+|...
T Consensus        76 ~~~~g~~   82 (95)
T cd05897          76 FTHEGKK   82 (95)
T ss_pred             EeeCCEE
Confidence            9987654

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.08  E-value=4.6e-10  Score=70.01  Aligned_cols=72  Identities=14%  Similarity=0.260  Sum_probs=58.4

Q ss_pred             CCccEEecCCcEEEEEE-EeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCe-EEEEEEEeCCc
Q psy15128         43 PQDQKVGLNGIASFQCV-AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAG-FFVCSALSVAG  118 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~C~~~~~~~  118 (292)
                      ...+.+.+|+.+.|.|. ..+.|.+.|.|++++....    ....+.....++.|.|.+++..|.| .|.|.|.+...
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i----~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~   83 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHI----TQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL   83 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccc----cccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence            35678899999999996 6889999999997765432    1245666777899999999999999 79999998653

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.08  E-value=3.8e-10  Score=71.52  Aligned_cols=77  Identities=19%  Similarity=0.276  Sum_probs=53.8

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEe-ccC-----CCceEEecCCCccccccccccccccccccccceeEE
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI-DLE-----SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKL  279 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~-~~~-----~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C  279 (292)
                      .+..+.+|+++.|.|.+ .+.|.+.+.|++.+..+ ...     ...++.....    ......|.|..+..+|+|.|+|
T Consensus         5 ~~v~v~eG~~v~L~C~~-~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~----~~~~~sL~I~~v~~~DsG~Y~C   79 (95)
T cd07701           5 QNVTVVEGGTANLTCRV-DQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA----SWHELSISISDVSLSDEGQYTC   79 (95)
T ss_pred             ceEEEecCCcEEEEEEE-ecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEEC----CCCcEEEEECcCCcccCEEEEE
Confidence            56789999999999998 88899999998643221 100     1223322111    0123468999999999999999


Q ss_pred             EEeecccc
Q psy15128        280 IAKNIRNQ  287 (292)
Q Consensus       280 ~a~n~~g~  287 (292)
                      .+.+..+.
T Consensus        80 ~~~t~~~~   87 (95)
T cd07701          80 SLFTMPVK   87 (95)
T ss_pred             EeEeecCc
Confidence            99986554

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.07  E-value=2.7e-10  Score=70.75  Aligned_cols=75  Identities=16%  Similarity=0.192  Sum_probs=50.8

Q ss_pred             CCceEEEeeCCCCC--CCCeEEEeEcCeEeccC---CCceEEecCCCccccccccccccccccccccceeEEEEeecccc
Q psy15128        213 GETALLECGPPKGQ--PEPTLHWKKNGQFIDLE---SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQ  287 (292)
Q Consensus       213 g~~~~l~C~~~~~~--p~~~~~W~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~  287 (292)
                      |+++.|.|.+ .+.  +...+.|.++++.+...   ...+....    ........|.|..+...|+|.|+|.|+|..|.
T Consensus         1 Ge~~~L~C~~-~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~----~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~   75 (86)
T cd05862           1 GEKLVLNCTA-RTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQ----EHTELSSTLTIENVTLSDLGRYTCTASSGQMI   75 (86)
T ss_pred             CCcEEEEEEE-EeCCCCcEEEEEEcCCcccccceeccccccccc----ccceeeeEEEEecCCcccCEEEEEEEeecceE
Confidence            7899999998 554  45588999877643210   10011110    01123357999999999999999999999998


Q ss_pred             cccCC
Q psy15128        288 QQHGT  292 (292)
Q Consensus       288 ~~~~t  292 (292)
                      ...+|
T Consensus        76 ~~~~t   80 (86)
T cd05862          76 AKNST   80 (86)
T ss_pred             ecccE
Confidence            76654

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.07  E-value=1.2e-10  Score=68.41  Aligned_cols=64  Identities=19%  Similarity=0.334  Sum_probs=44.0

Q ss_pred             CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEE
Q psy15128        213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIA  281 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a  281 (292)
                      |+.++|.|.+..+.+...+.|++++..+..  .........+.   .....|.|..+..+|+|.|.|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~--~~~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPE--GSTTNRSTNSV---SSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSE--EEEEEEEETTT---EEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccC--cceeEeecccc---eeeeEEEEccCCHHHCEEEEEEC
Confidence            789999999745677889999999875531  11111111110   00113899999999999999987

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.06  E-value=1e-09  Score=68.84  Aligned_cols=73  Identities=14%  Similarity=0.207  Sum_probs=50.0

Q ss_pred             cEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeec---------cCCCcceeEE------eeecEEEEccCCCCCCeEEE
Q psy15128         46 QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMF---------PGNAYGHLHV------TQEGTLRIQGVQKEDAGFFV  110 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~---------~~~~~~~~~~------~~~~~l~i~~~~~~d~g~Y~  110 (292)
                      +.+.+|+.++|.|.+.+.+.+.+.|++++......         ......+...      .....|+|.+++.+|+|.|+
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            35678999999999988888899999765322100         0011111111      12346999999999999999


Q ss_pred             EEEEeCCc
Q psy15128        111 CSALSVAG  118 (292)
Q Consensus       111 C~~~~~~~  118 (292)
                      |.+.+..+
T Consensus        82 C~v~~~~~   89 (94)
T cd07690          82 CEVEDKKE   89 (94)
T ss_pred             EEECCccc
Confidence            99987644

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=99.05  E-value=7.4e-10  Score=68.44  Aligned_cols=72  Identities=14%  Similarity=0.194  Sum_probs=47.7

Q ss_pred             ceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128        215 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       215 ~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      .+.|+|.+..+.|.+.++|+++|+++........ ...++... .....|.+......|.|.|+|.|.|.....
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~-~~~~~~~~-~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~   72 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKE-LLKDGKRE-TTVSTLPITPSDHDTGRTFTCRARNEALPT   72 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCceeeee-EecCCCeE-EEEEEEEEeCceecCCCEEEEEEcCccCCC
Confidence            3689999955578899999999998853221122 22222211 222356676777778889999999976543

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.04  E-value=4.1e-09  Score=67.59  Aligned_cols=77  Identities=16%  Similarity=0.225  Sum_probs=55.0

Q ss_pred             eCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC-----eEEeec-cC--------CCcceeEEeeecEEEEccCCCCCC
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG-----SQVLMF-PG--------NAYGHLHVTQEGTLRIQGVQKEDA  106 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~-----~~~~~~-~~--------~~~~~~~~~~~~~l~i~~~~~~d~  106 (292)
                      +.+.+..+.+|+++.|.|.........+.|+|+.     ..+... ..        ...++..+..+++|.|.+++..|+
T Consensus         3 ie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~   82 (105)
T cd05774           3 IELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDT   82 (105)
T ss_pred             EeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccC
Confidence            4455667889999999997643334489999963     122111 11        123566667788999999999999


Q ss_pred             eEEEEEEEeCC
Q psy15128        107 GFFVCSALSVA  117 (292)
Q Consensus       107 g~Y~C~~~~~~  117 (292)
                      |.|+|.+.+..
T Consensus        83 G~Y~~~v~~~~   93 (105)
T cd05774          83 GFYTLQTITTN   93 (105)
T ss_pred             EEEEEEEEeCC
Confidence            99999998765

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.04  E-value=2.4e-10  Score=67.11  Aligned_cols=58  Identities=22%  Similarity=0.477  Sum_probs=41.5

Q ss_pred             CCcEEEEEEE-eeeCCCeeEEEECCeEEeeccCCCcceeEEee-ec----EEEEccCCCCCCeEEEEEE
Q psy15128         51 NGIASFQCVA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ-EG----TLRIQGVQKEDAGFFVCSA  113 (292)
Q Consensus        51 g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~-~~----~l~i~~~~~~d~g~Y~C~~  113 (292)
                      |+.++|.|.+ .+.+...+.|++++.......     ...... ..    .|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~-----~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGS-----TTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEE-----EEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcc-----eeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7889999999 556778999999876432110     001111 11    3999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.03  E-value=9.5e-10  Score=68.79  Aligned_cols=82  Identities=15%  Similarity=0.172  Sum_probs=61.3

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCe-EEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPT-LHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      ..+.+.+|+++.|.|.+ .++|+|. +.|.+++..+.......+.....  ...+-...|.+..++.++.|.|+|.|.|.
T Consensus        11 ~~~~v~~gE~~~L~V~i-eAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~--~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~   87 (101)
T cd05860          11 TTIFVNAGENLDLIVEY-EAYPKPEHQQWIYMNRTLTNTSDHYVKSRNE--SNNRYVSELHLTRLKGTEGGTYTFLVSNS   87 (101)
T ss_pred             ceEEEECCCCEEEEEEE-EeCCCCeeeEEEcCCcccCccccceeEEecc--CceEEEEEEEEeecChhhCcEEEEEEECC
Confidence            46678999999999998 9999997 99999988765333322222111  11112346889999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      .+..+.
T Consensus        88 ~~~~s~   93 (101)
T cd05860          88 DASASV   93 (101)
T ss_pred             CCeEEE
Confidence            988764

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.02  E-value=5.8e-10  Score=68.75  Aligned_cols=62  Identities=24%  Similarity=0.471  Sum_probs=49.4

Q ss_pred             eEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccc
Q psy15128        208 TRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQ  287 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~  287 (292)
                      ..+.+|+.++|.|.+ .+.|.+.+.|++++..+....+                 .+.+..+..+|+|.|+|.|.|..|.
T Consensus         9 ~~v~~g~~~~l~C~~-~~~p~~~~~w~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~y~C~~~~~~~~   70 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSV-SGNPPPQVQWYKNGSPINSSQN-----------------GLFIPNVSPEDSGNYTCRASNGSGS   70 (80)
T ss_dssp             SEEETTSEEEEEEEE-ESSSSSEEEEEETTEEEEEESS-----------------EEEESSEEGGGTEEEEEEEEETTEE
T ss_pred             eEEeCCCcEEEEEEE-Ecccceeeeeeeeeeeeeeeee-----------------eeeeeeeccccCEEEEEEEEeCCCC
Confidence            568899999999998 6888899999999887752111                 1445678889999999999996653

...

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.01  E-value=1.8e-09  Score=67.74  Aligned_cols=69  Identities=17%  Similarity=0.268  Sum_probs=48.2

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEc--CeEecc--CCCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKN--GQFIDL--ESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK  282 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~  282 (292)
                      .+.+.+|+.+.|.|.. . .|.+.+.|++.  +.....  ....+....         ...|.|..+..+|+|.|+|.|.
T Consensus         5 ~~~~~eG~~v~L~C~~-~-~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~---------~~~L~I~~~~~~DsG~Y~C~a~   73 (91)
T cd05871           5 VVYGVENNSTFLECLP-K-SPQASVKWLFQRGGDQRKEEVKTEERLIHT---------ERGLLLRSLQRSDAGVYTCTAV   73 (91)
T ss_pred             EEEEecCCcEEEEEEC-C-CCCceEEEEEECCCCCccccccccccEEEe---------cCeEEEeeCChhHCEEEEEEEE
Confidence            4567899999999995 4 78899999983  322110  112233222         2358899999999999999998


Q ss_pred             e-ccc
Q psy15128        283 N-IRN  286 (292)
Q Consensus       283 n-~~g  286 (292)
                      | ..|
T Consensus        74 ~~~~~   78 (91)
T cd05871          74 EHSFS   78 (91)
T ss_pred             ccCCe
Confidence            5 444

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>smart00409 IG Immunoglobulin

Probab=99.01  E-value=1.1e-08  Score=63.72  Aligned_cols=81  Identities=26%  Similarity=0.474  Sum_probs=56.6

Q ss_pred             ccEEecCCcEEEEEEEeeeCCCeeEEEEC-CeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEE
Q psy15128         45 DQKVGLNGIASFQCVAEGSPLPSVFWTQE-GSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  123 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~  123 (292)
                      ...+..|+.+.|.|.+.+.+.+.+.|+++ +..+.  ...............|.|.++..+|.|.|.|.+.+..+.....
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~   80 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA--ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST   80 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC--CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence            45677899999999998887889999998 55442  1111111111113589999999999999999999776655544


Q ss_pred             EEEE
Q psy15128        124 AFLQ  127 (292)
Q Consensus       124 ~~l~  127 (292)
                      ..|.
T Consensus        81 ~~l~   84 (86)
T smart00409       81 TTLT   84 (86)
T ss_pred             EEEE
Confidence            4443

>smart00410 IG_like Immunoglobulin like

Probab=99.01  E-value=1.1e-08  Score=63.72  Aligned_cols=81  Identities=26%  Similarity=0.474  Sum_probs=56.6

Q ss_pred             ccEEecCCcEEEEEEEeeeCCCeeEEEEC-CeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEE
Q psy15128         45 DQKVGLNGIASFQCVAEGSPLPSVFWTQE-GSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  123 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~  123 (292)
                      ...+..|+.+.|.|.+.+.+.+.+.|+++ +..+.  ...............|.|.++..+|.|.|.|.+.+..+.....
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~   80 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA--ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST   80 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC--CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence            45677899999999998887889999998 55442  1111111111113589999999999999999999776655544


Q ss_pred             EEEE
Q psy15128        124 AFLQ  127 (292)
Q Consensus       124 ~~l~  127 (292)
                      ..|.
T Consensus        81 ~~l~   84 (86)
T smart00410       81 TTLT   84 (86)
T ss_pred             EEEE
Confidence            4443

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=99.01  E-value=1.7e-09  Score=66.09  Aligned_cols=65  Identities=17%  Similarity=0.280  Sum_probs=52.0

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN  283 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n  283 (292)
                      ...++.+|+++.|.|.. .+ +.+.+.|+++|..+.  .+.++.....         .|.|..++..|+|.|.|.|..
T Consensus         4 ~~~tv~~g~~v~L~C~~-~s-~~A~v~W~~ng~~l~--~~~r~~~~~~---------GLlI~~~~~~dsG~Y~C~s~E   68 (85)
T cd05872           4 KNRTVAPGADVVLPCQL-RS-NLASPVWLFNGTPLN--AQFSYRVGTD---------GLLILVTSPEHSGTYRCYSEE   68 (85)
T ss_pred             eEEEEecCCCEEEECCC-CC-CCccEEEEECCcccC--CCcceEEeCC---------CCEEEECCHhhCEEEEEEEec
Confidence            35688999999999996 44 467999999999885  3355555555         377888999999999999973

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.97  E-value=1.9e-08  Score=63.00  Aligned_cols=84  Identities=13%  Similarity=0.116  Sum_probs=61.7

Q ss_pred             CccEEecCCcEEEEEEEeeeCCCe-eEEEECCeEEeeccCCCcceeEE----eeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128         44 QDQKVGLNGIASFQCVAEGSPLPS-VFWTQEGSQVLMFPGNAYGHLHV----TQEGTLRIQGVQKEDAGFFVCSALSVAG  118 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~g~Y~C~~~~~~~  118 (292)
                      ....+.+|+++.|.|.+.++|+|. +.|.+++..+...... ......    ...+.|++..+..++.|.|+|.+.|...
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~-~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~   89 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDH-YVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA   89 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccc-eeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence            356788999999999999999997 9999987654222111 111111    1235799999999999999999999887


Q ss_pred             CeeEEEEEEE
Q psy15128        119 STTVRAFLQV  128 (292)
Q Consensus       119 ~~~~~~~l~v  128 (292)
                      .......|.|
T Consensus        90 ~~s~tF~l~v   99 (101)
T cd05860          90 SASVTFNVYV   99 (101)
T ss_pred             eEEEEEEEEE
Confidence            7666666554

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.97  E-value=2.6e-09  Score=68.08  Aligned_cols=77  Identities=21%  Similarity=0.302  Sum_probs=52.3

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEe-ccC-----CCceEEecCCCccccccccccccccccccccceeEE
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI-DLE-----SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKL  279 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~-~~~-----~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C  279 (292)
                      +...+.+|++++|.|.+ .+.+.+.+.|++.+..+ ...     ...++......    .....|.|..+..+|+|.|+|
T Consensus         5 ~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~----~~~~~L~I~~v~~~DsG~Y~C   79 (95)
T cd05717           5 QDVTVVEGGTATLKCRV-KNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFS----ANELSISISNVSLSDEGRYTC   79 (95)
T ss_pred             CcEEEcCCCCEEEEEEE-CCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCC----CCeeEEEEccCCcccCEEEEE
Confidence            46788999999999998 67788899998643221 100     11232221110    122368999999999999999


Q ss_pred             EEeecccc
Q psy15128        280 IAKNIRNQ  287 (292)
Q Consensus       280 ~a~n~~g~  287 (292)
                      .+.+....
T Consensus        80 ~~~~~~~~   87 (95)
T cd05717          80 SLYTMPVQ   87 (95)
T ss_pred             EEecCCCc
Confidence            99986543

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.94  E-value=9.6e-09  Score=64.36  Aligned_cols=75  Identities=12%  Similarity=0.170  Sum_probs=51.8

Q ss_pred             cEEecCCcEEEEEEE-ee----eCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         46 QKVGLNGIASFQCVA-EG----SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~-~~----~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      ..+..|.+..|.|.- .+    .+.+.+.|||++..+.... ..  .........|.|.++..+|+|.|+|.+.+..+..
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~-~~--~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~   81 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDN-EK--FYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGK   81 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCC-cc--eEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence            346678899999963 22    3566899999998763111 11  1111234579999999999999999999876654


Q ss_pred             eEE
Q psy15128        121 TVR  123 (292)
Q Consensus       121 ~~~  123 (292)
                      ...
T Consensus        82 ~y~   84 (95)
T cd05897          82 KYN   84 (95)
T ss_pred             EEE
Confidence            433

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.93  E-value=2e-08  Score=62.99  Aligned_cols=73  Identities=15%  Similarity=0.242  Sum_probs=51.5

Q ss_pred             CccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccC---CCcceeEEe----eecEEEEccCCCCCCeEEEEEEEeC
Q psy15128         44 QDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPG---NAYGHLHVT----QEGTLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                      .++.+.+|++++|.|.+.+.....+.|++.+..+.....   ....++...    ....|+|.+++.+|.|.|+|.+...
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            467788999999999998876677899887754421111   112222222    2336999999999999999998753

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>smart00409 IG Immunoglobulin

Probab=98.92  E-value=9.8e-09  Score=63.98  Aligned_cols=76  Identities=22%  Similarity=0.380  Sum_probs=57.5

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEc-CeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKN-GQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      ....+..|+++.|.|.+ .+.+.+.+.|+++ +..+.  ...++.......     ...|.|..+...|+|.|.|.+.|.
T Consensus         2 ~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~v~--~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~v~~~   73 (86)
T smart00409        2 PSVTVKEGESVTLSCEV-SGSPPPEVTWYKQGGKLLA--ESGRFSVSRSGS-----NSTLTISNVTPEDSGTYTCAATNS   73 (86)
T ss_pred             CcEEEeCCCeEEEEEEE-ccCCCCeEEEEECCCEEcC--CCCcEEEEEcCC-----eeEEEEEeeccccCeEEEEEEEcC
Confidence            35678899999999998 6668889999998 87775  223333322221     236889999999999999999988


Q ss_pred             ccccc
Q psy15128        285 RNQQQ  289 (292)
Q Consensus       285 ~g~~~  289 (292)
                      .|...
T Consensus        74 ~~~~~   78 (86)
T smart00409       74 SGSAS   78 (86)
T ss_pred             CCeEE
Confidence            77654

>smart00410 IG_like Immunoglobulin like

Probab=98.92  E-value=9.8e-09  Score=63.98  Aligned_cols=76  Identities=22%  Similarity=0.380  Sum_probs=57.5

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEc-CeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKN-GQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      ....+..|+++.|.|.+ .+.+.+.+.|+++ +..+.  ...++.......     ...|.|..+...|+|.|.|.+.|.
T Consensus         2 ~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~v~--~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~v~~~   73 (86)
T smart00410        2 PSVTVKEGESVTLSCEV-SGSPPPEVTWYKQGGKLLA--ESGRFSVSRSGS-----NSTLTISNVTPEDSGTYTCAATNS   73 (86)
T ss_pred             CcEEEeCCCeEEEEEEE-ccCCCCeEEEEECCCEEcC--CCCcEEEEEcCC-----eeEEEEEeeccccCeEEEEEEEcC
Confidence            35678899999999998 6668889999998 87775  223333322221     236889999999999999999988


Q ss_pred             ccccc
Q psy15128        285 RNQQQ  289 (292)
Q Consensus       285 ~g~~~  289 (292)
                      .|...
T Consensus        74 ~~~~~   78 (86)
T smart00410       74 SGSAS   78 (86)
T ss_pred             CCeEE
Confidence            77654

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.91  E-value=1.5e-08  Score=62.53  Aligned_cols=75  Identities=20%  Similarity=0.272  Sum_probs=49.8

Q ss_pred             EEEEEEEee-eCCCeeEEEECCeEEeeccCCC---cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128         54 ASFQCVAEG-SPLPSVFWTQEGSQVLMFPGNA---YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  128 (292)
Q Consensus        54 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v  128 (292)
                      +.|.|.+.| .|.+.+.|++++..+.......   .........+.|.+.....+|.|.|+|.+.|..........+.+
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l   80 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL   80 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence            689999987 5888999999987653111000   00011222347888888888999999999987665555554443

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.90  E-value=5e-08  Score=63.93  Aligned_cols=78  Identities=15%  Similarity=0.235  Sum_probs=50.7

Q ss_pred             CCccEEecCCcEEEEEEEeee----CCCeeEEEEC---------------CeEEeeccCCCcceeEE-----eeecEEEE
Q psy15128         43 PQDQKVGLNGIASFQCVAEGS----PLPSVFWTQE---------------GSQVLMFPGNAYGHLHV-----TQEGTLRI   98 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~----~~~~v~W~~~---------------~~~~~~~~~~~~~~~~~-----~~~~~l~i   98 (292)
                      +..+.+..|++++|.|.+...    +...+.|.+.               +.......+.-.+|..+     ..+.+|.|
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I   84 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI   84 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence            345678889999999998653    2348999432               11111001111223433     23458999


Q ss_pred             ccCCCCCCeEEEEEEEeCCcCe
Q psy15128         99 QGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        99 ~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      .+++.+|.|.|+|.+.|.....
T Consensus        85 ~nv~~sD~G~Y~C~v~n~p~~~  106 (116)
T cd05879          85 HNLDYTDNGTFTCDVKNPPDIV  106 (116)
T ss_pred             ccCCcccCEEEEEEEEcCCCcC
Confidence            9999999999999999865543

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.89  E-value=1.2e-08  Score=64.21  Aligned_cols=73  Identities=21%  Similarity=0.250  Sum_probs=52.8

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeC
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                      |.+...+. ..+.+|+.++|.|... .+...+.|+++|.......     .......+.+.|.+++.+|+|.|+|.+.+.
T Consensus         3 P~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~-----~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           3 PSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK-----PPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc-----cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            44555553 4678999999999885 5666899999987543110     011233557999999999999999999875

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.88  E-value=2.3e-08  Score=63.35  Aligned_cols=68  Identities=21%  Similarity=0.352  Sum_probs=49.5

Q ss_pred             CCcEEEEEEEeeeCCCeeEEEECCeEEe-------------eccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         51 NGIASFQCVAEGSPLPSVFWTQEGSQVL-------------MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      |++|+|.|.........+.|++......             .......++.....++.|.|.+++.+|+|.|+|.+....
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~   80 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN   80 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence            7899999988765556899998653221             011122355566667899999999999999999998765


Q ss_pred             c
Q psy15128        118 G  118 (292)
Q Consensus       118 ~  118 (292)
                      +
T Consensus        81 ~   81 (92)
T cd05741          81 G   81 (92)
T ss_pred             C
Confidence            3

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.88  E-value=1.1e-08  Score=61.92  Aligned_cols=68  Identities=12%  Similarity=0.112  Sum_probs=43.8

Q ss_pred             ceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        215 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       215 ~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      .+.|.|.+..+.|.+.|.|+++++++.... ........++   .....|.+..-...|...|+|.|.|..=
T Consensus         1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~~~-~~~~~~~~~~---t~~S~L~~~p~~eDdG~~~~C~a~~~~l   68 (82)
T cd05883           1 EIELNCTAMASKPAATIRWFKGNKELTGKS-TVEETWSRMF---TVTSQLMLKVTKEDDGVPVICLVDHPAV   68 (82)
T ss_pred             CEEEEEEecCCCCCCEEEEEECCEECcCcc-cceeccCCCc---EEEEEEEEECchhhCCCEEEEEEcCccc
Confidence            368999998889999999999999995321 1111111221   2233455544444444599999999763

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.85  E-value=1.3e-08  Score=64.02  Aligned_cols=72  Identities=19%  Similarity=0.166  Sum_probs=51.1

Q ss_pred             cceEEeCCCceEEEeeCCC----------CCCCCeEEEeEcCeEeccCC-----CceEEecCCCcccccccccccccccc
Q psy15128        206 KDTRVASGETALLECGPPK----------GQPEPTLHWKKNGQFIDLES-----SKRVSILGDPWFDSRRSRSIFGSVLG  270 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~----------~~p~~~~~W~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~  270 (292)
                      ....+.+|+.+.|.|....          ......+.|+|++..+....     ..|+...++         .|-+..+.
T Consensus         8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~---------~Lwf~Pa~   78 (104)
T cd05896           8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED---------SIWFRPAE   78 (104)
T ss_pred             eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC---------EEEEEeCC
Confidence            3467889999999999522          12234799999975553212     124444444         68888999


Q ss_pred             ccccceeEEEEeeccc
Q psy15128        271 ALSDDQWKLIAKNIRN  286 (292)
Q Consensus       271 ~~~~g~y~C~a~n~~g  286 (292)
                      .+|+|.|+|++.|...
T Consensus        79 ~eDSG~Y~C~~rN~t~   94 (104)
T cd05896          79 LQDSGLYTCVLRNSTY   94 (104)
T ss_pred             hhhCeEEEEEECCCCc
Confidence            9999999999999764

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.84  E-value=1.6e-08  Score=62.26  Aligned_cols=71  Identities=13%  Similarity=0.059  Sum_probs=46.0

Q ss_pred             ceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128        215 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       215 ~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      .+.|.|.+..++|.+.+.|+++|+++.... .......++.+.  ....|.+......+.+.|+|.|.|.....
T Consensus         1 ~~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~--~~s~l~~~~~~~d~g~~~~C~v~h~~l~~   71 (82)
T cd05761           1 EVELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFT--VTSSLRFQVDREDDGAPIICRVDHPALKS   71 (82)
T ss_pred             CEEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEE--EEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence            368999997778999999999999985222 112222222222  22234444444555669999999988764

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.84  E-value=8.7e-09  Score=62.51  Aligned_cols=73  Identities=27%  Similarity=0.522  Sum_probs=48.3

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeeeC-CCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGSP-LPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      |.+...+.......+. +.|.|.+.+.+ .+.+.|+ ......    ...........+.|.|.++..+|.|.|+|.|.|
T Consensus         2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~----~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSF----NSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEE----EEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCce----eeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            4444444444343333 99999998876 7799999 111110    011123344566899999999999999999976

...

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.83  E-value=1.1e-07  Score=61.93  Aligned_cols=80  Identities=18%  Similarity=0.339  Sum_probs=52.6

Q ss_pred             cCCcEEEEEEEeeeC------------CCeeEEEECC--e--EEee-cc-----CCCc-ceeEEe------eecEEEEcc
Q psy15128         50 LNGIASFQCVAEGSP------------LPSVFWTQEG--S--QVLM-FP-----GNAY-GHLHVT------QEGTLRIQG  100 (292)
Q Consensus        50 ~g~~~~l~C~~~~~~------------~~~v~W~~~~--~--~~~~-~~-----~~~~-~~~~~~------~~~~l~i~~  100 (292)
                      .|++++|.|.+....            .+.|.|+|..  .  .+.. ..     ...+ .|..+.      .+..|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            489999999886532            3589999842  1  1111 11     0111 344442      356899999


Q ss_pred             CCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128        101 VQKEDAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus       101 ~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      ++.+|+|.|+|.+.+..........|.|.
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            99999999999998765555655666554

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.81  E-value=2.9e-08  Score=61.11  Aligned_cols=70  Identities=19%  Similarity=0.200  Sum_probs=46.8

Q ss_pred             eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCC-ccccccccccccccccccccceeEEEEeeccccc
Q psy15128        216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP-WFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      +.|+|.+..++|.+.|+|+++|+++.... .......++ .+.  ....|.+......+...|+|.|.+.....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~-~~~~~~~~~~t~~--~~s~l~~~~~~~d~g~~~tC~v~h~~l~~   72 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAP-TSVLEDGNGKTFT--VSSSVEFQVTREDDGAEITCSVGHESLHD   72 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcc-eeEEECCCCCEEE--EEEEEEEEecchhCCCEEEEEEECcccCC
Confidence            68999997778999999999999885322 223333332 222  22344454555556679999999987654

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.80  E-value=1.2e-07  Score=61.64  Aligned_cols=81  Identities=22%  Similarity=0.375  Sum_probs=53.5

Q ss_pred             cCCcEEEEEEEeeeC------CCeeEEEECC-----e-EEeeccCC-------CcceeEE----eeecEEEEccCCCCCC
Q psy15128         50 LNGIASFQCVAEGSP------LPSVFWTQEG-----S-QVLMFPGN-------AYGHLHV----TQEGTLRIQGVQKEDA  106 (292)
Q Consensus        50 ~g~~~~l~C~~~~~~------~~~v~W~~~~-----~-~~~~~~~~-------~~~~~~~----~~~~~l~i~~~~~~d~  106 (292)
                      .|++++|.|.+...+      ...+.|++..     . .+......       ...+...    ..+..|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            489999999987543      4589999862     1 11111111       1112221    1345899999999999


Q ss_pred             eEEEEEEEeCCcCeeEEEEEEEEe
Q psy15128        107 GFFVCSALSVAGSTTVRAFLQVTS  130 (292)
Q Consensus       107 g~Y~C~~~~~~~~~~~~~~l~v~~  130 (292)
                      |.|.|.+.+..+.....+.|.|.+
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999998766666666666653

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.80  E-value=2.7e-08  Score=61.08  Aligned_cols=71  Identities=14%  Similarity=0.049  Sum_probs=45.0

Q ss_pred             eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128        216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      ++|.|.+..++|.+.++|++||+.+............++.+.  ....|.+..-...+...|+|.|.|..-..
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~--~~s~L~~~~~~~d~g~~ytC~v~h~~l~~   72 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFT--VSSTLDFRVDRSDDGVAIICRVDHESLNA   72 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEE--EEEEEEEEcccccCCCEEEEEEechhcCC
Confidence            689999977799999999999999853221122222222222  22344444333444559999999887654

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.77  E-value=2.5e-07  Score=60.26  Aligned_cols=81  Identities=23%  Similarity=0.369  Sum_probs=54.2

Q ss_pred             cCCcEEEEEEEeeeC------CCeeEEEECCe------EEeecc-------CCCcceeEEe----eecEEEEccCCCCCC
Q psy15128         50 LNGIASFQCVAEGSP------LPSVFWTQEGS------QVLMFP-------GNAYGHLHVT----QEGTLRIQGVQKEDA  106 (292)
Q Consensus        50 ~g~~~~l~C~~~~~~------~~~v~W~~~~~------~~~~~~-------~~~~~~~~~~----~~~~l~i~~~~~~d~  106 (292)
                      .|++++|.|.+...|      ...+.|+|...      .+....       ..-..+..+.    .+..|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            489999999886542      34699998531      111111       1111333332    234799999999999


Q ss_pred             eEEEEEEEeCCcCeeEEEEEEEEe
Q psy15128        107 GFFVCSALSVAGSTTVRAFLQVTS  130 (292)
Q Consensus       107 g~Y~C~~~~~~~~~~~~~~l~v~~  130 (292)
                      |.|.|.+.+..+.....+.|.|.+
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEEE
Confidence            999999998777777777776653

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.77  E-value=3.7e-08  Score=62.12  Aligned_cols=76  Identities=8%  Similarity=0.053  Sum_probs=50.7

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCe--EEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccc-eeEEEEee
Q psy15128        207 DTRVASGETALLECGPPKGQPEPT--LHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDD-QWKLIAKN  283 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~--~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~a~n  283 (292)
                      ...+.+|+.++|+|.+..+.|.+.  |.|+++++.+..   ...........  .....+.+ .+..+|.| .|+|.|.+
T Consensus        10 p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~---~~~~~~~~~~~--~~~stlt~-~~~r~D~g~~~sC~A~l   83 (100)
T cd05755          10 PSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSR---QPFGDNTKSPV--NAPATITI-TVDREDHGANFSCETEL   83 (100)
T ss_pred             CCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEccc---ceeccccCCCc--eeEEEEEE-ecchhhCCcEEEEEEEe
Confidence            445789999999999977889886  799999998842   11111111111  12223444 35566777 99999999


Q ss_pred             ccccc
Q psy15128        284 IRNQQ  288 (292)
Q Consensus       284 ~~g~~  288 (292)
                      .++..
T Consensus        84 ~l~~~   88 (100)
T cd05755          84 DLRPE   88 (100)
T ss_pred             ccCcc
Confidence            88764

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.76  E-value=2.9e-07  Score=60.04  Aligned_cols=81  Identities=20%  Similarity=0.370  Sum_probs=53.1

Q ss_pred             cCCcEEEEEEEeeeC----------CCeeEEEECC--eEEee--c-------cCCCcceeEEe------eecEEEEccCC
Q psy15128         50 LNGIASFQCVAEGSP----------LPSVFWTQEG--SQVLM--F-------PGNAYGHLHVT------QEGTLRIQGVQ  102 (292)
Q Consensus        50 ~g~~~~l~C~~~~~~----------~~~v~W~~~~--~~~~~--~-------~~~~~~~~~~~------~~~~l~i~~~~  102 (292)
                      .|++++|.|.+...+          ...+.|+|..  .....  .       ...-.+|..+.      ....|+|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            488999999986533          2579999852  21110  0       11111344332      33579999999


Q ss_pred             CCCCeEEEEEEEeCCcCeeEEEEEEEEe
Q psy15128        103 KEDAGFFVCSALSVAGSTTVRAFLQVTS  130 (292)
Q Consensus       103 ~~d~g~Y~C~~~~~~~~~~~~~~l~v~~  130 (292)
                      .+|+|.|.|.+..........+.|.|..
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            9999999999987655566666666643

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.76  E-value=1.3e-07  Score=60.85  Aligned_cols=77  Identities=21%  Similarity=0.271  Sum_probs=47.7

Q ss_pred             CCcEEEEEEEeeeC---CCeeEEEECCe--EEeecc-C---------CCcceeEEe------eecEEEEccCCCCCCeEE
Q psy15128         51 NGIASFQCVAEGSP---LPSVFWTQEGS--QVLMFP-G---------NAYGHLHVT------QEGTLRIQGVQKEDAGFF  109 (292)
Q Consensus        51 g~~~~l~C~~~~~~---~~~v~W~~~~~--~~~~~~-~---------~~~~~~~~~------~~~~l~i~~~~~~d~g~Y  109 (292)
                      |++++|.|.+....   ...+.|++...  .+.... +         .-..+..+.      ....|+|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            68899999985321   23688988542  111111 0         011233332      235799999999999999


Q ss_pred             EEEEEeCCcCeeEEEEEE
Q psy15128        110 VCSALSVAGSTTVRAFLQ  127 (292)
Q Consensus       110 ~C~~~~~~~~~~~~~~l~  127 (292)
                      +|.+.+..+.....+.|.
T Consensus        81 ~C~v~~~~~~~~~~i~l~   98 (100)
T cd05713          81 TCFFQSDGFYEEATVELK   98 (100)
T ss_pred             EEEEecCCcEEEEEEEEE
Confidence            999998655544444443

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.75  E-value=1.2e-07  Score=59.80  Aligned_cols=80  Identities=15%  Similarity=0.157  Sum_probs=52.0

Q ss_pred             EEeCCCccEEecCCcEEEEEEEee-eCCCe--eEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEG-SPLPS--VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      +.+.+.+..+.+|+.++|.|.+.+ .|.+.  |.||+++..+..................|.+.....+|...|+|+|.+
T Consensus         4 V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l   83 (100)
T cd05755           4 VELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETEL   83 (100)
T ss_pred             EEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEe
Confidence            344555556789999999999977 57665  799999987742211110011122344677776666666699999986


Q ss_pred             CCc
Q psy15128        116 VAG  118 (292)
Q Consensus       116 ~~~  118 (292)
                      ...
T Consensus        84 ~l~   86 (100)
T cd05755          84 DLR   86 (100)
T ss_pred             ccC
Confidence            544

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.75  E-value=2e-08  Score=63.18  Aligned_cols=67  Identities=9%  Similarity=0.144  Sum_probs=48.4

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      ...+..|+.|+|.|..  ..+...+.|+++|......   .  .. .    ......+.+..+...|+|.|+|.+.|..
T Consensus        10 ~~vV~~G~~VtL~C~~--~~~~~~f~l~k~g~~~~~~---~--~~-~----~~~~~~f~i~~v~~~~~G~Y~C~~~~~~   76 (91)
T cd05751          10 SSVVPLGKPVTLRCQG--PYGAVEYRLYREGSTFAVK---K--PP-E----PQNKAKFFIPSMKREHAGRYRCYYRSGV   76 (91)
T ss_pred             CCccCCCCcEEEEEec--CCCCCEEEEEECCCCcccc---c--cC-C----CceeEEEEccCCChhHCEEEEEEEECCC
Confidence            3467899999999985  4677899999998754311   0  00 0    1122257788999999999999999863

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.74  E-value=3.5e-08  Score=61.88  Aligned_cols=74  Identities=12%  Similarity=0.133  Sum_probs=52.3

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEec------cCCCceEEecCCCccccccccccccccccccccceeEE
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID------LESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKL  279 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C  279 (292)
                      +++++.+|+++.|+|.+ .+.....+.|++.+..+.      ...+.|+......    .....|.|..+..+|+|.|.|
T Consensus         5 ~nvtv~~G~ta~L~C~v-~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~----~~~~tL~I~~vq~~D~G~Y~C   79 (95)
T cd05881           5 EDVTVVEGEVAIISCRV-KNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFS----SNELRVSLSNVSLSDEGRYFC   79 (95)
T ss_pred             CceEEcCCCcEEEEEEE-ccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCC----CCEEEEEECcCCcccCEEEEE
Confidence            46788999999999998 666667789988765432      1233444433211    123358999999999999999


Q ss_pred             EEeec
Q psy15128        280 IAKNI  284 (292)
Q Consensus       280 ~a~n~  284 (292)
                      .+...
T Consensus        80 qv~t~   84 (95)
T cd05881          80 QLYTD   84 (95)
T ss_pred             EEEcc
Confidence            98754

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.73  E-value=1.4e-07  Score=57.80  Aligned_cols=76  Identities=18%  Similarity=0.252  Sum_probs=53.5

Q ss_pred             ccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEE
Q psy15128         45 DQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  124 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~  124 (292)
                      ...+.+|+++.|.|...+. .+.+.|++++..+..     ..+.... ...|.|..++.+|+|.|.|.+.- .|....-+
T Consensus         5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~-----~~r~~~~-~~GLlI~~~~~~dsG~Y~C~s~E-~gf~~~~~   76 (85)
T cd05872           5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNA-----QFSYRVG-TDGLLILVTSPEHSGTYRCYSEE-EGFQQLVA   76 (85)
T ss_pred             EEEEecCCCEEEECCCCCC-CccEEEEECCcccCC-----CcceEEe-CCCCEEEECCHhhCEEEEEEEec-CCCeEEEE
Confidence            4678899999999998764 569999999987631     1223323 33577999999999999999863 24434333


Q ss_pred             EEEE
Q psy15128        125 FLQV  128 (292)
Q Consensus       125 ~l~v  128 (292)
                      .+.+
T Consensus        77 ~y~l   80 (85)
T cd05872          77 SYSL   80 (85)
T ss_pred             EEEE
Confidence            3333

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.72  E-value=1.8e-07  Score=61.27  Aligned_cols=76  Identities=18%  Similarity=0.382  Sum_probs=52.6

Q ss_pred             CCCccEEecCCcEEEEEEEeeeCCCeeEEEECCe---E--EeeccC----CCcceeEEe-----eecEEEEccCCCCCCe
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGS---Q--VLMFPG----NAYGHLHVT-----QEGTLRIQGVQKEDAG  107 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~---~--~~~~~~----~~~~~~~~~-----~~~~l~i~~~~~~d~g  107 (292)
                      .+..+.+.+|++++|.|.+.+.+...+.|++...   .  +.....    ....++...     ....|.|.+++.+|+|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG   83 (109)
T cd04983           4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA   83 (109)
T ss_pred             cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence            4556778899999999999876777999998532   1  111100    122333332     2348999999999999


Q ss_pred             EEEEEEEeCC
Q psy15128        108 FFVCSALSVA  117 (292)
Q Consensus       108 ~Y~C~~~~~~  117 (292)
                      .|.|.+.+..
T Consensus        84 ~Y~C~~~~~~   93 (109)
T cd04983          84 VYFCALSESG   93 (109)
T ss_pred             EEEEEEecCC
Confidence            9999998643

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.70  E-value=3e-08  Score=63.24  Aligned_cols=74  Identities=20%  Similarity=0.206  Sum_probs=49.9

Q ss_pred             eCCCceEEEeeCCCCC-CC-CeEEEeEcCeEeccCCC-ceEEecCCCccccccccccccccccccccceeEEEEeecccc
Q psy15128        211 ASGETALLECGPPKGQ-PE-PTLHWKKNGQFIDLESS-KRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQ  287 (292)
Q Consensus       211 ~~g~~~~l~C~~~~~~-p~-~~~~W~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~  287 (292)
                      ..|+.+.|.|.+ .|+ |. +.++|+++|..+..... .......++.+..  ...|.+......+.+.|+|.|++....
T Consensus        11 ~~~~~~~L~C~a-~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~--~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLA-TGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSV--SSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEE-eeEECCCcEEEEEECCEECCCceeccccccCCCCCEEE--EEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            368899999999 554 64 68999999999853332 2233334443332  234555555556899999999998763

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.70  E-value=1.6e-07  Score=59.78  Aligned_cols=71  Identities=21%  Similarity=0.358  Sum_probs=48.4

Q ss_pred             ecCCcEEEEEEEee-eCCCeeEEEECCeEEeeccC------------CCcceeEEee-ecEEEEccCCCCCCeEEEEEEE
Q psy15128         49 GLNGIASFQCVAEG-SPLPSVFWTQEGSQVLMFPG------------NAYGHLHVTQ-EGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        49 ~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~------------~~~~~~~~~~-~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      ..|++|+|.|.... .....+.|++....+.....            .-..+..+.. +..|+|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            36999999998754 34457999987543332211            1012333333 3689999999999999999998


Q ss_pred             eCCcC
Q psy15128        115 SVAGS  119 (292)
Q Consensus       115 ~~~~~  119 (292)
                      ...+.
T Consensus        82 ~~~~~   86 (97)
T cd05775          82 TKNGV   86 (97)
T ss_pred             cCCCC
Confidence            76543

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.70  E-value=1.8e-07  Score=61.34  Aligned_cols=75  Identities=13%  Similarity=0.352  Sum_probs=51.1

Q ss_pred             eCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCe--EEe---ecc--------CCCcceeEEe----eecEEEEccCCC
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGS--QVL---MFP--------GNAYGHLHVT----QEGTLRIQGVQK  103 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~--~~~---~~~--------~~~~~~~~~~----~~~~l~i~~~~~  103 (292)
                      ..|....+.+|++++|.|.+.+ +...+.|||...  ...   ...        .....++...    ....|.|.+++.
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~   81 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP   81 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence            3456778899999999999987 667899998532  111   000        1111222221    234799999999


Q ss_pred             CCCeEEEEEEEeC
Q psy15128        104 EDAGFFVCSALSV  116 (292)
Q Consensus       104 ~d~g~Y~C~~~~~  116 (292)
                      +|+|.|.|.+.+.
T Consensus        82 ~Dsg~Y~Ca~~~~   94 (110)
T cd05899          82 EDSAVYLCASSLG   94 (110)
T ss_pred             hhCEEEEEEeeCC
Confidence            9999999998754

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.66  E-value=4e-07  Score=58.35  Aligned_cols=77  Identities=19%  Similarity=0.408  Sum_probs=49.0

Q ss_pred             CcEEEEEEEeeeC---CCeeEEEECCeE----Eeec--------cCCCcceeEEe----eecEEEEccCCCCCCeEEEEE
Q psy15128         52 GIASFQCVAEGSP---LPSVFWTQEGSQ----VLMF--------PGNAYGHLHVT----QEGTLRIQGVQKEDAGFFVCS  112 (292)
Q Consensus        52 ~~~~l~C~~~~~~---~~~v~W~~~~~~----~~~~--------~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~  112 (292)
                      ++++|.|.+...+   ...+.|+|....    +...        ......+..+.    .+..|+|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4789999987643   337999995431    1111        01112233322    345899999999999999999


Q ss_pred             EEe-CCcCeeEEEEEEE
Q psy15128        113 ALS-VAGSTTVRAFLQV  128 (292)
Q Consensus       113 ~~~-~~~~~~~~~~l~v  128 (292)
                      +.. ..|.......|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            875 4555555555544

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.65  E-value=4.6e-07  Score=54.87  Aligned_cols=65  Identities=14%  Similarity=0.170  Sum_probs=45.1

Q ss_pred             EEEEEEEee-eCCCeeEEEECCeEEeeccCC-CcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128         54 ASFQCVAEG-SPLPSVFWTQEGSQVLMFPGN-AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG  118 (292)
Q Consensus        54 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~  118 (292)
                      +.|.|.+.| .|.+.|.|++++..+...... ..........+.|.+..-..+|...|+|++.|...
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l   68 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAV   68 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCccc
Confidence            689998876 588899999999877422110 01111233455788887777888899999988654

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.64  E-value=6.7e-07  Score=57.93  Aligned_cols=79  Identities=20%  Similarity=0.314  Sum_probs=52.0

Q ss_pred             CCcEEEEEEEeeeC-------CCeeEEEECC-----eEE--eecc-------CCCcceeEEe------eecEEEEccCCC
Q psy15128         51 NGIASFQCVAEGSP-------LPSVFWTQEG-----SQV--LMFP-------GNAYGHLHVT------QEGTLRIQGVQK  103 (292)
Q Consensus        51 g~~~~l~C~~~~~~-------~~~v~W~~~~-----~~~--~~~~-------~~~~~~~~~~------~~~~l~i~~~~~  103 (292)
                      |++++|.|.+.-.|       .+.+.|.+..     ...  ....       ..-.++..+.      .+..|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            78899999975322       3589998751     111  1111       1222444443      245899999999


Q ss_pred             CCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128        104 EDAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus       104 ~d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      +|+|.|.|.+..........+.|.|.
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEEE
Confidence            99999999998865555666666654

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.64  E-value=1.4e-07  Score=61.78  Aligned_cols=78  Identities=22%  Similarity=0.213  Sum_probs=52.1

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCe---E---ecc------CCCceEEecCCCcccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ---F---IDL------ESSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~---~---~~~------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                      +....+.+|++++|.|.+ .+.+...+.|++...   +   +..      ....++.+....   ......|.|..++.+
T Consensus         5 ~~~v~~~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~~~~~   80 (109)
T cd04983           5 PQSLSVQEGENVTLNCNY-STSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDK---SRKSSSLHISAAQLS   80 (109)
T ss_pred             CCceEEcCCCCEEEEEEE-CCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcc---cCCEEEEEECCCCHH
Confidence            456789999999999998 555777999998431   1   100      011222221111   012346999999999


Q ss_pred             ccceeEEEEeeccc
Q psy15128        273 SDDQWKLIAKNIRN  286 (292)
Q Consensus       273 ~~g~y~C~a~n~~g  286 (292)
                      |+|.|.|.+.+..+
T Consensus        81 DsG~Y~C~~~~~~~   94 (109)
T cd04983          81 DSAVYFCALSESGG   94 (109)
T ss_pred             HCEEEEEEEecCCC
Confidence            99999999998654

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.63  E-value=2e-07  Score=61.10  Aligned_cols=75  Identities=12%  Similarity=0.105  Sum_probs=50.0

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcC--eEe---c-cC----------CCceEEecCCCcccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNG--QFI---D-LE----------SSKRVSILGDPWFDSRRSRSIFGSV  268 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g--~~~---~-~~----------~~~~~~~~~~~~~~~~~~~~l~i~~  268 (292)
                      +....+.+|++++|.|.+ .+ +...+.|+|..  +..   . ..          ...++.....    ......|.|..
T Consensus         5 p~~~~v~~G~~v~l~C~~-~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~~L~I~~   78 (110)
T cd05899           5 PRYLIKGRGQSVTLRCSQ-TS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRP----SLTRSSLTIKS   78 (110)
T ss_pred             CCceEEcCCCcEEEEEEE-CC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECc----CCCccEEEECC
Confidence            456789999999999998 55 66789999842  111   0 00          0111111111    01234699999


Q ss_pred             ccccccceeEEEEeecc
Q psy15128        269 LGALSDDQWKLIAKNIR  285 (292)
Q Consensus       269 ~~~~~~g~y~C~a~n~~  285 (292)
                      +..+|+|.|.|.+.+..
T Consensus        79 ~~~~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          79 AEPEDSAVYLCASSLGG   95 (110)
T ss_pred             CChhhCEEEEEEeeCCC
Confidence            99999999999998754

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.62  E-value=5.2e-08  Score=59.04  Aligned_cols=59  Identities=20%  Similarity=0.317  Sum_probs=38.4

Q ss_pred             CceEEEeeCCCCCC-CCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128        214 ETALLECGPPKGQP-EPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN  283 (292)
Q Consensus       214 ~~~~l~C~~~~~~p-~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n  283 (292)
                      ..++|+|.+ .+.+ .+.++|+ +...... .        ...........|.+..+...|.|.|+|+|+|
T Consensus        16 ~~~~l~C~~-~~~~~~~~~~W~-~~~~~~~-~--------~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   16 GSVTLTCSA-EGGPPPPSISWY-DSNPSFN-S--------NSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEEEE-SSEESSEEEEEE-TEEEEEE-E--------EEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             eeEEEEEEE-ccccCCeEEEEE-ecCCcee-e--------eeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            339999999 5555 8899999 1111100 0        0001112233688889999999999999998

...

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.61  E-value=9.3e-07  Score=58.49  Aligned_cols=76  Identities=16%  Similarity=0.348  Sum_probs=48.9

Q ss_pred             CCccEEecCCcEEEEEEEeeeC----CCeeEEEECCe------EEeec-cC-------CCc-ceeEEee-----ecEEEE
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSP----LPSVFWTQEGS------QVLMF-PG-------NAY-GHLHVTQ-----EGTLRI   98 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~----~~~v~W~~~~~------~~~~~-~~-------~~~-~~~~~~~-----~~~l~i   98 (292)
                      |..+.+.+|++++|.|.+....    ...+.|++...      .+... .+       ..+ .+..+..     +..|+|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            4566788999999999886432    24699986321      11111 11       111 2222221     357999


Q ss_pred             ccCCCCCCeEEEEEEEeCCc
Q psy15128         99 QGVQKEDAGFFVCSALSVAG  118 (292)
Q Consensus        99 ~~~~~~d~g~Y~C~~~~~~~  118 (292)
                      .+++.+|+|.|.|.+.+...
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCC
Confidence            99999999999999987644

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.60  E-value=7.8e-07  Score=58.57  Aligned_cols=76  Identities=14%  Similarity=0.310  Sum_probs=48.9

Q ss_pred             CCccEEecCCcEEEEEEEeeeC----CCeeEEEEC----CeE--EeeccC-------CC-cceeEEe-----eecEEEEc
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSP----LPSVFWTQE----GSQ--VLMFPG-------NA-YGHLHVT-----QEGTLRIQ   99 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~----~~~v~W~~~----~~~--~~~~~~-------~~-~~~~~~~-----~~~~l~i~   99 (292)
                      +..+.+.+|++++|.|.+...+    ...+.|++.    +..  +.....       .. ..+..+.     .+..|+|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            4466788999999999986532    236999752    221  111111       01 1222221     24479999


Q ss_pred             cCCCCCCeEEEEEEEeCCc
Q psy15128        100 GVQKEDAGFFVCSALSVAG  118 (292)
Q Consensus       100 ~~~~~d~g~Y~C~~~~~~~  118 (292)
                      +++.+|+|.|+|.+.+...
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          85 QLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             eCChhhCEEEEEEEEeCCC
Confidence            9999999999999987654

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.57  E-value=5.3e-07  Score=59.54  Aligned_cols=75  Identities=20%  Similarity=0.396  Sum_probs=50.6

Q ss_pred             CCCccEEecCCcEEEEEEEe-eeCCCeeEEEECCe---EEeec-----------cCCCcceeEEeee-----cEEEEccC
Q psy15128         42 RPQDQKVGLNGIASFQCVAE-GSPLPSVFWTQEGS---QVLMF-----------PGNAYGHLHVTQE-----GTLRIQGV  101 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~---~~~~~-----------~~~~~~~~~~~~~-----~~l~i~~~  101 (292)
                      .+..+.+.+|+++.|.|... ......+.|++...   .....           ......+..+..+     ..|.|.++
T Consensus         7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l   86 (114)
T PF07686_consen    7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL   86 (114)
T ss_dssp             EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred             eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence            35567888999999999998 44555899998322   11111           1111222322322     36999999


Q ss_pred             CCCCCeEEEEEEEeC
Q psy15128        102 QKEDAGFFVCSALSV  116 (292)
Q Consensus       102 ~~~d~g~Y~C~~~~~  116 (292)
                      +.+|+|.|.|.+...
T Consensus        87 ~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   87 QPSDSGTYFCQVSTS  101 (114)
T ss_dssp             SGGGEEEEEEEEEES
T ss_pred             CcCcCEEEEEEEEEC
Confidence            999999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.57  E-value=4e-07  Score=59.68  Aligned_cols=80  Identities=20%  Similarity=0.285  Sum_probs=51.1

Q ss_pred             cceEEeCCCceEEEeeCCCCC---CCCeEEEeEc---------------CeEeccCC---CceEEecCCCcccccccccc
Q psy15128        206 KDTRVASGETALLECGPPKGQ---PEPTLHWKKN---------------GQFIDLES---SKRVSILGDPWFDSRRSRSI  264 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~---p~~~~~W~~~---------------g~~~~~~~---~~~~~~~~~~~~~~~~~~~l  264 (292)
                      ....+..|+.++|.|......   +...+.|.+.               |+......   ..|+.+..+.   .....+|
T Consensus         6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~---~~~daSI   82 (116)
T cd05879           6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNP---SRKDGSI   82 (116)
T ss_pred             ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCC---CcCeeEE
Confidence            456788999999999974322   2348999552               22111000   0133322221   1233478


Q ss_pred             ccccccccccceeEEEEeeccccc
Q psy15128        265 FGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       265 ~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      .|.+++..|+|+|+|.+.|..+..
T Consensus        83 ~I~nv~~sD~G~Y~C~v~n~p~~~  106 (116)
T cd05879          83 VIHNLDYTDNGTFTCDVKNPPDIV  106 (116)
T ss_pred             EEccCCcccCEEEEEEEEcCCCcC
Confidence            999999999999999999987743

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.56  E-value=3.9e-07  Score=59.28  Aligned_cols=76  Identities=21%  Similarity=0.295  Sum_probs=49.7

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeC-CCeeEEEECCe-----EEeeccC----CCcceeEEe---eecEEEEccCCCCCC
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSP-LPSVFWTQEGS-----QVLMFPG----NAYGHLHVT---QEGTLRIQGVQKEDA  106 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~-~~~v~W~~~~~-----~~~~~~~----~~~~~~~~~---~~~~l~i~~~~~~d~  106 (292)
                      ...|....+.+|++++|.|.+.+.. ...+.|||...     .+.....    ....+....   ....|.|.+++.+|+
T Consensus         4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds   83 (106)
T cd04980           4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA   83 (106)
T ss_pred             EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence            3445667888999999999987654 56799998431     1111110    011122221   223699999999999


Q ss_pred             eEEEEEEEe
Q psy15128        107 GFFVCSALS  115 (292)
Q Consensus       107 g~Y~C~~~~  115 (292)
                      |.|.|.+.+
T Consensus        84 g~Y~Ca~~~   92 (106)
T cd04980          84 AVYYCQQYG   92 (106)
T ss_pred             EEEEEEEeC
Confidence            999999854

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PHA03376 BARF1; Provisional

Probab=98.56  E-value=2.1e-07  Score=64.19  Aligned_cols=74  Identities=20%  Similarity=0.369  Sum_probs=46.0

Q ss_pred             CcccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCe
Q psy15128          1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGS   75 (292)
Q Consensus         1 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~   75 (292)
                      +|.+++++|.|+|+|.++......... -.|.+-.|-.+.+.........-....+.|...|+|.|.+.|.-+..
T Consensus        90 vI~~l~lSDdGtY~C~fQkge~~~~k~-ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~  163 (221)
T PHA03376         90 VVTAANISHDGNYLCRMKLGETEVTKQ-EHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG  163 (221)
T ss_pred             EEEeeeecCCceEEEEEEcCCCceeee-eeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence            478999999999999998755332222 12222222222222211112224556899998889999999987543

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.54  E-value=5.3e-07  Score=58.62  Aligned_cols=72  Identities=24%  Similarity=0.442  Sum_probs=48.8

Q ss_pred             EEecCCcEEEEEEEeee-CCCeeEEEECCe-----EEeec-c------CCCcceeEEe-----eecEEEEccCCCCCCeE
Q psy15128         47 KVGLNGIASFQCVAEGS-PLPSVFWTQEGS-----QVLMF-P------GNAYGHLHVT-----QEGTLRIQGVQKEDAGF  108 (292)
Q Consensus        47 ~~~~g~~~~l~C~~~~~-~~~~v~W~~~~~-----~~~~~-~------~~~~~~~~~~-----~~~~l~i~~~~~~d~g~  108 (292)
                      .+.+|++++|.|.+... +...+.|++...     .+... .      .....+....     ....|.|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            46789999999999875 566899998532     11111 0      1112233222     23489999999999999


Q ss_pred             EEEEEEeCCc
Q psy15128        109 FVCSALSVAG  118 (292)
Q Consensus       109 Y~C~~~~~~~  118 (292)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999986543

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.53  E-value=7.7e-07  Score=56.28  Aligned_cols=67  Identities=15%  Similarity=0.183  Sum_probs=46.3

Q ss_pred             ccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         45 DQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      ...+.+|++++|.|.... +...+.|+|++.........  ..........+.|.+++.+|+|.|.|...
T Consensus         9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~--~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711           9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLY--EKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecc--cccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            455789999999997754 45579999988653211000  00011224478999999999999999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.53  E-value=2.4e-07  Score=58.65  Aligned_cols=75  Identities=12%  Similarity=0.029  Sum_probs=48.4

Q ss_pred             CCceEEEeeCCCCCCCCeEEEeEcCeEeccC-------CCceE-EecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        213 GETALLECGPPKGQPEPTLHWKKNGQFIDLE-------SSKRV-SILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~-------~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      |++|+|.|.+ ...+...+.|+++.......       ..... .....+........+|.|..++.+|+|.|+|.+.+.
T Consensus         1 G~~VtL~c~~-~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~   79 (92)
T cd05741           1 GESVTLPVSN-LPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIIST   79 (92)
T ss_pred             CCcEEEEccc-CCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcC
Confidence            7899999997 55666699999975332100       00000 001112222233357999999999999999999988


Q ss_pred             cccc
Q psy15128        285 RNQQ  288 (292)
Q Consensus       285 ~g~~  288 (292)
                      .|..
T Consensus        80 ~~~~   83 (92)
T cd05741          80 NGVT   83 (92)
T ss_pred             CCcE
Confidence            7543

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.52  E-value=7.5e-07  Score=56.73  Aligned_cols=71  Identities=15%  Similarity=0.243  Sum_probs=48.6

Q ss_pred             ecCCcEEEEEEEeee-CC-CeeEEEECCeEEeeccC----CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         49 GLNGIASFQCVAEGS-PL-PSVFWTQEGSQVLMFPG----NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        49 ~~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      ..|+.++|.|.+.|+ |. ..++|++++..+.....    .......+...+.|.+......+.+.|+|.+.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            468899999999997 53 58999999877632211    0011112233446777777778999999999987553

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.50  E-value=3e-06  Score=51.26  Aligned_cols=64  Identities=14%  Similarity=0.180  Sum_probs=47.3

Q ss_pred             ccEEecCCcEEEEEEEeeeC--CCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeC
Q psy15128         45 DQKVGLNGIASFQCVAEGSP--LPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                      ...+..|++++|.|.....+  .+.+.|...+....        .........|.+..+...|+|.++|.+...
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~--------~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~   73 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK--------QILNQDKKTLNLVQLGPNDSGTWDCIVSVN   73 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc--------eeccCCccEEEeceeCcccCCEEEEEEEEC
Confidence            34688999999999986543  45999987655421        111123558999999999999999999754

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.48  E-value=4.6e-06  Score=53.46  Aligned_cols=76  Identities=22%  Similarity=0.501  Sum_probs=46.9

Q ss_pred             cEEEEEEEeeeC---CCeeEEEECCe-----EEee--cc-CCC-----cceeEEe-----eecEEEEccCCCCCCeEEEE
Q psy15128         53 IASFQCVAEGSP---LPSVFWTQEGS-----QVLM--FP-GNA-----YGHLHVT-----QEGTLRIQGVQKEDAGFFVC  111 (292)
Q Consensus        53 ~~~l~C~~~~~~---~~~v~W~~~~~-----~~~~--~~-~~~-----~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C  111 (292)
                      +++|.|.....+   ...+.|+|...     .+..  .. +..     .++..+.     .+..|+|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            689999886433   33799998421     1111  10 101     1233333     24589999999999999999


Q ss_pred             EEEe-CCcCeeEEEEEEE
Q psy15128        112 SALS-VAGSTTVRAFLQV  128 (292)
Q Consensus       112 ~~~~-~~~~~~~~~~l~v  128 (292)
                      .+.+ ..|..+..+.|.|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9986 5555444444443

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.48  E-value=3.9e-06  Score=53.32  Aligned_cols=76  Identities=18%  Similarity=0.388  Sum_probs=48.3

Q ss_pred             cEEEEEEEeee-CCC---eeEEEECC----eEEeeccC--------CCcceeEEe----eecEEEEccCCCCCCeEEEEE
Q psy15128         53 IASFQCVAEGS-PLP---SVFWTQEG----SQVLMFPG--------NAYGHLHVT----QEGTLRIQGVQKEDAGFFVCS  112 (292)
Q Consensus        53 ~~~l~C~~~~~-~~~---~v~W~~~~----~~~~~~~~--------~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~  112 (292)
                      +++|.|.+... |..   .|.|.+..    ..+.....        .-.++..+.    .+.+|.|.+++.+|.|.|+|.
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~   81 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE   81 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence            58999998742 211   69998741    12211111        112333332    236899999999999999999


Q ss_pred             EEe-CCcCeeEEEEEEE
Q psy15128        113 ALS-VAGSTTVRAFLQV  128 (292)
Q Consensus       113 ~~~-~~~~~~~~~~l~v  128 (292)
                      +.+ ..|..+..+.|.|
T Consensus        82 v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          82 FATFPTGNRESQLNLTV   98 (99)
T ss_pred             EEeCCCCCeEEEEEEEE
Confidence            998 5666565666654

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.47  E-value=5.5e-07  Score=59.30  Aligned_cols=80  Identities=21%  Similarity=0.291  Sum_probs=49.1

Q ss_pred             CcceEEeCCCceEEEeeCCCCCC---CCeEEEeEc----CeE--ec-cCCC----------ceEEecCCCcccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQP---EPTLHWKKN----GQF--ID-LESS----------KRVSILGDPWFDSRRSRSI  264 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~----g~~--~~-~~~~----------~~~~~~~~~~~~~~~~~~l  264 (292)
                      +..+.+.+|++++|.|......+   ...|.|++.    +.+  +. ...+          .++.+..+   ......+|
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~---~~~~~~sL   81 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGN---IMRRDASI   81 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecC---CcCCceEE
Confidence            35678899999999999633222   236999751    211  11 0000          01111100   01223469


Q ss_pred             ccccccccccceeEEEEeecccc
Q psy15128        265 FGSVLGALSDDQWKLIAKNIRNQ  287 (292)
Q Consensus       265 ~i~~~~~~~~g~y~C~a~n~~g~  287 (292)
                      .|..++.+|+|.|.|.+.|..+.
T Consensus        82 ~I~~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          82 LIWQLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             EEeeCChhhCEEEEEEEEeCCCC
Confidence            99999999999999999997764

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.47  E-value=8.9e-06  Score=52.91  Aligned_cols=80  Identities=24%  Similarity=0.438  Sum_probs=53.1

Q ss_pred             CCcEEEEEEEeeeC-----------CCeeEEEEC-----C-----eEEeeccC-------CCcceeEEe------eecEE
Q psy15128         51 NGIASFQCVAEGSP-----------LPSVFWTQE-----G-----SQVLMFPG-------NAYGHLHVT------QEGTL   96 (292)
Q Consensus        51 g~~~~l~C~~~~~~-----------~~~v~W~~~-----~-----~~~~~~~~-------~~~~~~~~~------~~~~l   96 (292)
                      |++++|.|.+.-.|           ...|.|++-     +     ..+....+       .-.++..+.      .+.+|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            67899999887433           237999874     1     11111111       122344432      34689


Q ss_pred             EEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEe
Q psy15128         97 RIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS  130 (292)
Q Consensus        97 ~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~  130 (292)
                      .|.+++.+|+|.|.|.+..........+.|.|..
T Consensus        82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            9999999999999999998777667777776653

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.47  E-value=1.2e-06  Score=58.08  Aligned_cols=74  Identities=18%  Similarity=0.343  Sum_probs=49.5

Q ss_pred             CCCccEEecCCcEEEEEEEee--eCCCeeEEEECC--eE---Ee-ecc--------CCCcceeEEe-----eecEEEEcc
Q psy15128         42 RPQDQKVGLNGIASFQCVAEG--SPLPSVFWTQEG--SQ---VL-MFP--------GNAYGHLHVT-----QEGTLRIQG  100 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~--~~~~~v~W~~~~--~~---~~-~~~--------~~~~~~~~~~-----~~~~l~i~~  100 (292)
                      .|....+.+|++++|.|.+.+  .+.+.+.|+|..  ..   +. ...        .....+....     ....|+|.+
T Consensus         4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   83 (116)
T cd04982           4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQN   83 (116)
T ss_pred             cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEE
Confidence            345567788999999999877  567789999952  11   11 010        0112233322     234799999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy15128        101 VQKEDAGFFVCSALS  115 (292)
Q Consensus       101 ~~~~d~g~Y~C~~~~  115 (292)
                      ++.+|+|.|.|.+..
T Consensus        84 ~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          84 LEKEDSATYYCAYWE   98 (116)
T ss_pred             CCHHHCEEEEEEEec
Confidence            999999999999854

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.46  E-value=2.3e-06  Score=52.63  Aligned_cols=66  Identities=18%  Similarity=0.287  Sum_probs=43.2

Q ss_pred             EEEEEEEeee-CCCeeEEEECCeEEeeccCCC--cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         54 ASFQCVAEGS-PLPSVFWTQEGSQVLMFPGNA--YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        54 ~~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      +.|.|.+.+. |.+.+.|++++..+.......  .....+...+.|.+.....++.+.|+|.+.+....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            6899999774 888999999998763111000  00012223345777766677778999999987554

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.46  E-value=9.9e-07  Score=57.37  Aligned_cols=74  Identities=18%  Similarity=0.215  Sum_probs=47.9

Q ss_pred             CcceEEeCCCceEEEeeCCCCCC-CCeEEEeEcC--e---EeccCC-------CceEEecCCCccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQP-EPTLHWKKNG--Q---FIDLES-------SKRVSILGDPWFDSRRSRSIFGSVLGA  271 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~g--~---~~~~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~  271 (292)
                      |....+.+|++++|.|.+ .+.. ...+.|++..  +   .|....       ..++.....     .....|.|..++.
T Consensus         7 p~~~~v~~G~~v~L~C~~-~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~~~~   80 (106)
T cd04980           7 PATLSVSPGESATISCKA-SQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGS-----GTDFTLTISRVEP   80 (106)
T ss_pred             CCcEEECCCCCEEEEEEE-CCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEecc-----CCEEEEEECCCCh
Confidence            456788999999999997 5444 5689999832  1   111000       011211111     1223588999999


Q ss_pred             cccceeEEEEeec
Q psy15128        272 LSDDQWKLIAKNI  284 (292)
Q Consensus       272 ~~~g~y~C~a~n~  284 (292)
                      +|+|.|.|.+.+.
T Consensus        81 ~Dsg~Y~Ca~~~~   93 (106)
T cd04980          81 EDAAVYYCQQYGT   93 (106)
T ss_pred             HHCEEEEEEEeCC
Confidence            9999999999754

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.45  E-value=2.3e-06  Score=59.46  Aligned_cols=86  Identities=15%  Similarity=0.223  Sum_probs=57.9

Q ss_pred             ccEEecCCcEEEEEEEe-eeCCCeeEEEECCeEEeeccC-------CCcceeEE----eeecEEEEccCCCCCCeEEEEE
Q psy15128         45 DQKVGLNGIASFQCVAE-GSPLPSVFWTQEGSQVLMFPG-------NAYGHLHV----TQEGTLRIQGVQKEDAGFFVCS  112 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~-------~~~~~~~~----~~~~~l~i~~~~~~d~g~Y~C~  112 (292)
                      .+.+.+|++++|.|... +...+.+.|+|..+.+.....       .-..+...    .....|+|.+++.+|+|.|+|.
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~  103 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI  103 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence            45688999999999984 445678999997543322111       00122221    1345899999999999999999


Q ss_pred             EEe-CCc-CeeEEEEEEEEe
Q psy15128        113 ALS-VAG-STTVRAFLQVTS  130 (292)
Q Consensus       113 ~~~-~~~-~~~~~~~l~v~~  130 (292)
                      +.. ..| ..+....|+|..
T Consensus       104 F~tfp~G~~~~gt~CLtVt~  123 (189)
T PHA02987        104 FNTLLSKNNEKGVVCLNVTT  123 (189)
T ss_pred             EEecCCCCCceeEEEEEEEc
Confidence            874 344 556666777763

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.45  E-value=2.6e-06  Score=54.32  Aligned_cols=78  Identities=19%  Similarity=0.320  Sum_probs=48.1

Q ss_pred             CCcEEEEEEEeeeCC-CeeEEEECCe----EEeec---cC-----CCcceeEE----eeecEEEEccCCCCCCeEEEEEE
Q psy15128         51 NGIASFQCVAEGSPL-PSVFWTQEGS----QVLMF---PG-----NAYGHLHV----TQEGTLRIQGVQKEDAGFFVCSA  113 (292)
Q Consensus        51 g~~~~l~C~~~~~~~-~~v~W~~~~~----~~~~~---~~-----~~~~~~~~----~~~~~l~i~~~~~~d~g~Y~C~~  113 (292)
                      |++++|.|....... ..+.|+|...    .+...   .+     .-..+...    ..+..|+|.+++.+|+|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            789999998754322 2699998532    11111   01     11112222    12457999999999999999998


Q ss_pred             Ee-CCcCeeEEEEEEE
Q psy15128        114 LS-VAGSTTVRAFLQV  128 (292)
Q Consensus       114 ~~-~~~~~~~~~~l~v  128 (292)
                      .. ..|.....+.|+|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            73 4555555566654

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.45  E-value=2.2e-07  Score=58.32  Aligned_cols=75  Identities=17%  Similarity=0.242  Sum_probs=47.2

Q ss_pred             CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccc
Q psy15128        213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  289 (292)
                      |+.+.|+|.+..++|++.|+|+.++..+............++.+...  ..|.+..-...+...++|.|.|..-+..
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~--S~l~~~~~~~~~~~~~~C~~~~~~~~~~   88 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVS--STLTLTPTREDHGKTLTCRASHPALSQS   88 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEE--EEEEEETTGGGTTEEEEEEEEETTCCEE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEE--EEEEEEcChHHCCeEEEEEEECCccCCC
Confidence            67999999887889999999999998772112222233333333322  2344443333344489999999876554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.42  E-value=6.5e-07  Score=58.20  Aligned_cols=74  Identities=18%  Similarity=0.197  Sum_probs=48.6

Q ss_pred             EEeCCCceEEEeeCCCCC-CCCeEEEeEcCe-----Eec-c---------CCCceEEecCCCcccccccccccccccccc
Q psy15128        209 RVASGETALLECGPPKGQ-PEPTLHWKKNGQ-----FID-L---------ESSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       209 ~~~~g~~~~l~C~~~~~~-p~~~~~W~~~g~-----~~~-~---------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                      .+.+|++++|.|.+ ... +...+.|++...     .+. .         ....++.+.....   ....+|.|..++.+
T Consensus         2 ~v~~G~~v~L~C~~-~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~sL~I~~v~~~   77 (105)
T cd00099           2 SVSEGESVTLSCTY-SGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSS---KSSFTLTISSLQPE   77 (105)
T ss_pred             eecCCCCEEEEEEE-eCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEecc---CCEEEEEECCCCHH
Confidence            57799999999997 554 667899998432     110 0         0111222211110   12347899999999


Q ss_pred             ccceeEEEEeeccc
Q psy15128        273 SDDQWKLIAKNIRN  286 (292)
Q Consensus       273 ~~g~y~C~a~n~~g  286 (292)
                      |+|.|.|.+.+..+
T Consensus        78 D~G~Y~C~v~~~~~   91 (105)
T cd00099          78 DSAVYYCAVSLSGG   91 (105)
T ss_pred             HCEEEEEEEecCCC
Confidence            99999999998775

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.41  E-value=1.1e-06  Score=56.54  Aligned_cols=80  Identities=18%  Similarity=0.071  Sum_probs=48.7

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCe-----Eec-cCCCceEEe---cCCCcccccccccccccccccccccee
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQ-----FID-LESSKRVSI---LGDPWFDSRRSRSIFGSVLGALSDDQW  277 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~-----~~~-~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~~~g~y  277 (292)
                      +..+.+|+++.|.|+- ...+...+.|+|+..     .|. .........   ...+........+|.|..++.+|+|.|
T Consensus         7 p~~~~~G~~V~L~v~~-~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y   85 (105)
T cd05774           7 PPQVAEGENVLLLVHN-LPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFY   85 (105)
T ss_pred             CCcccCCCCEEEEecC-CCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEE
Confidence            4467899999999974 333334999999632     110 000000000   111222222334799999999999999


Q ss_pred             EEEEeecccc
Q psy15128        278 KLIAKNIRNQ  287 (292)
Q Consensus       278 ~C~a~n~~g~  287 (292)
                      .|.+.|..+.
T Consensus        86 ~~~v~~~~~~   95 (105)
T cd05774          86 TLQTITTNFQ   95 (105)
T ss_pred             EEEEEeCCcc
Confidence            9999987643

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.41  E-value=7.6e-07  Score=56.72  Aligned_cols=78  Identities=12%  Similarity=0.140  Sum_probs=50.0

Q ss_pred             eCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCC----ceEEecCCC---cccc-ccccccccccccccccceeEEEEe
Q psy15128        211 ASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS----KRVSILGDP---WFDS-RRSRSIFGSVLGALSDDQWKLIAK  282 (292)
Q Consensus       211 ~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~----~~~~~~~~~---~~~~-~~~~~l~i~~~~~~~~g~y~C~a~  282 (292)
                      ..|++|+|.|..........+.|++....+.....    .........   .+.. ....+|.|..++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            46999999998733255568999997543321111    111111111   1111 223579999999999999999999


Q ss_pred             eccccc
Q psy15128        283 NIRNQQ  288 (292)
Q Consensus       283 n~~g~~  288 (292)
                      +..|..
T Consensus        82 ~~~~~~   87 (97)
T cd05775          82 TKNGVT   87 (97)
T ss_pred             cCCCCe
Confidence            887765

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.41  E-value=1e-06  Score=57.31  Aligned_cols=76  Identities=14%  Similarity=0.176  Sum_probs=46.7

Q ss_pred             CCCceEEEeeCCCCC------CCCeEEEeEcC------eEeccCCCceEEecCC--Ccc----ccccccccccccccccc
Q psy15128        212 SGETALLECGPPKGQ------PEPTLHWKKNG------QFIDLESSKRVSILGD--PWF----DSRRSRSIFGSVLGALS  273 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~------p~~~~~W~~~g------~~~~~~~~~~~~~~~~--~~~----~~~~~~~l~i~~~~~~~  273 (292)
                      .|++|+|.|.. ...      ....|.|++..      ..+....+........  +..    ......+|.|..++..|
T Consensus         1 ~G~~V~L~C~~-~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD   79 (106)
T cd05714           1 LGGNVTLPCRF-HLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLED   79 (106)
T ss_pred             CCCCEEEeEEe-ECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHH
Confidence            48999999996 443      24699999962      1121111111111100  000    01234579999999999


Q ss_pred             cceeEEEEeeccccc
Q psy15128        274 DDQWKLIAKNIRNQQ  288 (292)
Q Consensus       274 ~g~y~C~a~n~~g~~  288 (292)
                      +|.|.|.+.+..+..
T Consensus        80 ~G~Y~C~v~~~~~~~   94 (106)
T cd05714          80 SGRYRCEVIDGIEDE   94 (106)
T ss_pred             CEEEEEEEEcCCCce
Confidence            999999999876654

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.39  E-value=2e-06  Score=55.01  Aligned_cols=69  Identities=17%  Similarity=0.305  Sum_probs=45.1

Q ss_pred             EEecCCcEEEEEEEeee--CCCeeEEEECCe--E---EeeccC----CCcceeEEe---eecEEEEccCCCCCCeEEEEE
Q psy15128         47 KVGLNGIASFQCVAEGS--PLPSVFWTQEGS--Q---VLMFPG----NAYGHLHVT---QEGTLRIQGVQKEDAGFFVCS  112 (292)
Q Consensus        47 ~~~~g~~~~l~C~~~~~--~~~~v~W~~~~~--~---~~~~~~----~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C~  112 (292)
                      .+.+|++++|.|.+.+.  ....+.||+...  .   +.....    ....+....   ....|+|.+++.+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            46789999999998764  455799998432  1   111110    111222222   233699999999999999999


Q ss_pred             EEe
Q psy15128        113 ALS  115 (292)
Q Consensus       113 ~~~  115 (292)
                      +.+
T Consensus        82 ~~~   84 (98)
T cd04984          82 VWD   84 (98)
T ss_pred             Ecc
Confidence            864

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PHA03270 envelope glycoprotein C; Provisional

Probab=98.36  E-value=0.00022  Score=56.12  Aligned_cols=104  Identities=18%  Similarity=0.305  Sum_probs=66.8

Q ss_pred             EEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC--ceEEE
Q psy15128         95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP--HIRWY  171 (292)
Q Consensus        95 ~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~--~~~W~  171 (292)
                      .|.|..++...+|.|+-...+..+......++.|..   +.+|.+.+.+.  .+..|+...-.|.+..+ |+-  .+.||
T Consensus       183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~---yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf  257 (466)
T PHA03270        183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRM---FRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWF  257 (466)
T ss_pred             eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEE---ecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEE
Confidence            499999999999999998776555444444444432   23555555433  46789999999999665 432  59999


Q ss_pred             eCCeeCCCCC---ccEEEcCCCcEEEEeeecCCCC
Q psy15128        172 KNGNSLPPED---TRINVSSSGSLQIDVLRDDFRA  203 (292)
Q Consensus       172 ~~~~~l~~~~---~~~~~~~~~~l~i~~~~~~d~g  203 (292)
                      .|+.++....   .......++.-.++.++.++.+
T Consensus       258 ~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~  292 (466)
T PHA03270        258 EGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARA  292 (466)
T ss_pred             eCCccccCcceeeeeeEecCCCeeEEEEEeccccc
Confidence            9999885321   1222334443455555555543

>PHA03269 envelope glycoprotein C; Provisional

Probab=98.36  E-value=0.0001  Score=58.70  Aligned_cols=206  Identities=18%  Similarity=0.217  Sum_probs=108.0

Q ss_pred             CcccCCcCCCeeEEEEEEecc-cc-cccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCC---eeEEEECCe
Q psy15128          1 MITEVKKSDEGKYQCYVQNMV-GE-RETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLP---SVFWTQEGS   75 (292)
Q Consensus         1 ~i~~v~~~D~G~Y~C~~~~~~-~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~v~W~~~~~   75 (292)
                      .|.++...++|.|.=.+.+.. +. .....+.+.+..+|.+.+.+.  .+.+|+...-.|.+..+.++   .+.|++++.
T Consensus       292 ~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~--PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~  369 (566)
T PHA03269        292 HILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD--PVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFG  369 (566)
T ss_pred             EEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCc
Confidence            378899999999985554322 11 223337778888887666554  47889999999999875332   689999988


Q ss_pred             EEeeccCCCcceeE------EeeecEEEEccCCCCC--CeEEEEEEEeCCcCe-eEEEEEEEEeecCCCCCeEEeCCCCc
Q psy15128         76 QVLMFPGNAYGHLH------VTQEGTLRIQGVQKED--AGFFVCSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQ  146 (292)
Q Consensus        76 ~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d--~g~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~  146 (292)
                      .+....  ......      ++..+.|.+......|  --..+|.+.-..... ....+-.+. ...++.|.+.+     
T Consensus       370 ~V~~~~--it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaat-P~VY~~PtISm-----  441 (566)
T PHA03269        370 NIGKNF--ITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVT-PDVYPFPNVSI-----  441 (566)
T ss_pred             ccCccc--cccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccC-CccccCCeEEE-----
Confidence            764211  111111      2223345553322222  345799987432221 111111111 11123444433     


Q ss_pred             eecCCCeEEEEeEeccCCC--CceEEEeCCeeCCCCCccEE---EcCCCcEEEEeeecCCCCCCcceEEeCCCceEEEee
Q psy15128        147 TLPLHSVAFLPCQAVGSPP--PHIRWYKNGNSLPPEDTRIN---VSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECG  221 (292)
Q Consensus       147 ~~~~g~~v~l~C~~~~~p~--~~~~W~~~~~~l~~~~~~~~---~~~~~~l~i~~~~~~d~g~~~~~~~~~g~~~~l~C~  221 (292)
                      .+..|+   ..|.+.--|.  ..+.|+-++...........   ....|...|.+...         .-..++.+..+|.
T Consensus       442 ~FedG~---AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~~p---------LS~~dgpveYTCr  509 (566)
T PHA03269        442 EIIDGH---IVCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRFVNLQSSCD---------TSELDGPITYSCH  509 (566)
T ss_pred             EEeCCE---EEEecccccCCCceEEEEecCCCCCCccceeeccCCCCCCceeeccccc---------ccccCCceeEEEE
Confidence            233333   3576654443  47899987766433221110   01122233332110         0112356889999


Q ss_pred             CCCCCCCC
Q psy15128        222 PPKGQPEP  229 (292)
Q Consensus       222 ~~~~~p~~  229 (292)
                      . .|+|..
T Consensus       510 L-~GYP~~  516 (566)
T PHA03269        510 L-DGYPKK  516 (566)
T ss_pred             E-eecCCC
Confidence            7 898854

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.35  E-value=3.6e-06  Score=55.74  Aligned_cols=75  Identities=20%  Similarity=0.335  Sum_probs=50.1

Q ss_pred             eCCCccEEecCCcEEEEEEEeee-CCCeeEEEECC--eE-Ee-ec-----cCCCcceeEEe-----eecEEEEccCCCCC
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGS-PLPSVFWTQEG--SQ-VL-MF-----PGNAYGHLHVT-----QEGTLRIQGVQKED  105 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~-~~~~v~W~~~~--~~-~~-~~-----~~~~~~~~~~~-----~~~~l~i~~~~~~d  105 (292)
                      ..+..+.+.+|++++|.|.+... ....+.|+|..  .. .. ..     ......++...     ....|+|.+++.+|
T Consensus         4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D   83 (116)
T cd07706           4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED   83 (116)
T ss_pred             EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence            34556778899999999998653 44579999842  11 11 10     01112334332     13479999999999


Q ss_pred             CeEEEEEEEe
Q psy15128        106 AGFFVCSALS  115 (292)
Q Consensus       106 ~g~Y~C~~~~  115 (292)
                      +|.|.|.+..
T Consensus        84 sg~Y~C~~~~   93 (116)
T cd07706          84 SAKYFCALST   93 (116)
T ss_pred             CEEEEEEEEC
Confidence            9999999874

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.34  E-value=6.6e-06  Score=50.59  Aligned_cols=66  Identities=18%  Similarity=0.317  Sum_probs=43.5

Q ss_pred             EEEEEEEeee-CCCeeEEEECCeEEeeccC---CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         54 ASFQCVAEGS-PLPSVFWTQEGSQVLMFPG---NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        54 ~~l~C~~~~~-~~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      +.|.|.+.+. |.+.|.|++++..+.....   .......+...+.|.+.....++...|+|.+.+....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            6899999874 8889999999976531110   0000012233346777677777888999999987543

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.33  E-value=1.8e-05  Score=49.83  Aligned_cols=77  Identities=17%  Similarity=0.361  Sum_probs=49.0

Q ss_pred             CcEEEEEEEeee-CCCeeEEEECC----eEEeecc---C-----CCcceeEE----eeecEEEEccCCCCCCeEEEEEEE
Q psy15128         52 GIASFQCVAEGS-PLPSVFWTQEG----SQVLMFP---G-----NAYGHLHV----TQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        52 ~~~~l~C~~~~~-~~~~v~W~~~~----~~~~~~~---~-----~~~~~~~~----~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      ++++|.|..... ....|.|.|..    ..+....   +     .-.++..+    ..+.+|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            468999998643 23479998842    1221111   1     11123333    225689999999999999999986


Q ss_pred             -eCCcCeeEEEEEEE
Q psy15128        115 -SVAGSTTVRAFLQV  128 (292)
Q Consensus       115 -~~~~~~~~~~~l~v  128 (292)
                       ...|.......|.|
T Consensus        81 tfP~G~~~~~~~l~~   95 (96)
T cd05887          81 TFPLGNTQSSTTVTV   95 (96)
T ss_pred             eCCCCCeeEEEEEEE
Confidence             45666666666654

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.32  E-value=1.4e-05  Score=51.93  Aligned_cols=76  Identities=16%  Similarity=0.274  Sum_probs=46.3

Q ss_pred             cEEecCCcEEEEEEEeee-CC-CeeEEEECCeEEeeccCCC--cce-eEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         46 QKVGLNGIASFQCVAEGS-PL-PSVFWTQEGSQVLMFPGNA--YGH-LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~--~~~-~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      .....|+.++|.|.+.++ |. ..++|+|||..+.......  ... ..+...+.|.+.....++...|+|.+.+.....
T Consensus        16 ~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~l~~   95 (111)
T cd05772          16 GRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRTLQA   95 (111)
T ss_pred             hccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCCCCC
Confidence            345568889999999985 53 4899999998764211100  000 122334456666544443346999999875443


Q ss_pred             e
Q psy15128        121 T  121 (292)
Q Consensus       121 ~  121 (292)
                      .
T Consensus        96 p   96 (111)
T cd05772          96 P   96 (111)
T ss_pred             C
Confidence            3

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.32  E-value=3.3e-06  Score=55.85  Aligned_cols=82  Identities=20%  Similarity=0.294  Sum_probs=49.2

Q ss_pred             CcceEEeCCCceEEEeeCCCCCC---CCeEEEeEcCe------Eec-cCCCceEEecCCCccc---------cccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQP---EPTLHWKKNGQ------FID-LESSKRVSILGDPWFD---------SRRSRSIF  265 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~g~------~~~-~~~~~~~~~~~~~~~~---------~~~~~~l~  265 (292)
                      |..+.+.+|++++|.|......+   ...+.|++...      .+. ...+...... .+.+.         ......|.
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~R~~~~~~~~~~~~sL~   83 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLK-DGRFKDRVEWVGNPSRKDASIV   83 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCcccccc-CccccCcEEEecCCcCCeeEEE
Confidence            45678899999999998633322   24699987321      110 0111100000 11110         11224689


Q ss_pred             cccccccccceeEEEEeecccc
Q psy15128        266 GSVLGALSDDQWKLIAKNIRNQ  287 (292)
Q Consensus       266 i~~~~~~~~g~y~C~a~n~~g~  287 (292)
                      |..+..+|+|.|.|.+.|..+.
T Consensus        84 I~~v~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          84 IHNLQFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             EeeCCcccCEEEEEEEEeCCCC
Confidence            9999999999999999988664

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.31  E-value=4.3e-06  Score=53.45  Aligned_cols=73  Identities=15%  Similarity=0.258  Sum_probs=46.8

Q ss_pred             EEecCCcEEEEEEEeee-C-CCeeEEEECCeEEeeccCCC----cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         47 KVGLNGIASFQCVAEGS-P-LPSVFWTQEGSQVLMFPGNA----YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        47 ~~~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      ....++.++|.|.+.|+ | ...+.|+++|..+.......    .....+...+.|.+......+...|+|.+.+....
T Consensus        13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l~   91 (100)
T cd07699          13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGLS   91 (100)
T ss_pred             HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCCC
Confidence            44467889999999985 4 44789999998763110000    01112333446777666666678999999886543

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.31  E-value=6.6e-06  Score=50.51  Aligned_cols=66  Identities=14%  Similarity=0.243  Sum_probs=44.5

Q ss_pred             EEEEEEEee-eCCCeeEEEECCeEEeeccC---CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         54 ASFQCVAEG-SPLPSVFWTQEGSQVLMFPG---NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        54 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      ++|.|.+.| +|...++|+|++..+.....   .......+...+.|.+.....++...|+|++.+....
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            689999987 57789999999987531110   0011122334457888777777888999999886544

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.30  E-value=1.8e-06  Score=55.31  Aligned_cols=72  Identities=22%  Similarity=0.200  Sum_probs=43.4

Q ss_pred             CceEEEeeCCCCC--CCCeEEEeEcCe----Ee--c-cCC--------CceEEecCCCccccccccccccccccccccce
Q psy15128        214 ETALLECGPPKGQ--PEPTLHWKKNGQ----FI--D-LES--------SKRVSILGDPWFDSRRSRSIFGSVLGALSDDQ  276 (292)
Q Consensus       214 ~~~~l~C~~~~~~--p~~~~~W~~~g~----~~--~-~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~  276 (292)
                      ++|+|.|......  ....+.|+|...    .+  . ...        ..++.+.....    ....|.|..+...|+|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~----~~~sL~I~~v~~~D~G~   76 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSL----EDATISISNLRLEDEGN   76 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCC----CceEEEEccCCcccCEE
Confidence            5789999973322  244799999542    11  0 000        11122111110    23479999999999999


Q ss_pred             eEEEEee-cccccc
Q psy15128        277 WKLIAKN-IRNQQQ  289 (292)
Q Consensus       277 y~C~a~n-~~g~~~  289 (292)
                      |.|.+.+ ..|+..
T Consensus        77 Y~C~v~~~~~g~~~   90 (98)
T cd05718          77 YICEFATFPQGNRQ   90 (98)
T ss_pred             EEEEEEeCCCCcEE
Confidence            9999875 556554

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.30  E-value=2.4e-06  Score=54.69  Aligned_cols=70  Identities=16%  Similarity=0.147  Sum_probs=44.7

Q ss_pred             EEeCCCceEEEeeCCCCC--CCCeEEEeEcC---eE--ec-cCC------CceEEecCCCcccccccccccccccccccc
Q psy15128        209 RVASGETALLECGPPKGQ--PEPTLHWKKNG---QF--ID-LES------SKRVSILGDPWFDSRRSRSIFGSVLGALSD  274 (292)
Q Consensus       209 ~~~~g~~~~l~C~~~~~~--p~~~~~W~~~g---~~--~~-~~~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~  274 (292)
                      .+.+|++++|.|.+ .+.  ....+.|++..   .+  |. ...      ..++....+     .....|.|..++..|+
T Consensus         2 ~v~~G~~v~l~C~~-~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~-----~~~~~L~I~~~~~~Ds   75 (98)
T cd04984           2 SVSPGETVTITCTG-SSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKS-----GNTASLTISGAQTEDE   75 (98)
T ss_pred             ccCCCCCEEEEEEE-cCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEcc-----CCEEEEEECCCChhhC
Confidence            57899999999997 444  45679998832   11  11 000      112221111     1233689999999999


Q ss_pred             ceeEEEEeec
Q psy15128        275 DQWKLIAKNI  284 (292)
Q Consensus       275 g~y~C~a~n~  284 (292)
                      |.|.|.+.+.
T Consensus        76 g~Y~C~~~~~   85 (98)
T cd04984          76 ADYYCQVWDS   85 (98)
T ss_pred             EEEEEEEccC
Confidence            9999999753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.30  E-value=2.1e-06  Score=51.82  Aligned_cols=69  Identities=19%  Similarity=0.068  Sum_probs=42.2

Q ss_pred             eEEEeeCCCCCCC-CeEEEeEcCeEeccCC-CceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        216 ALLECGPPKGQPE-PTLHWKKNGQFIDLES-SKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       216 ~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      ++|.|.|...+|+ ..+.|+++|+++.... ........++.+...  ..|.+......+...|+|.|.+..-
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~--s~L~v~~~~~~~~~~~tC~V~H~~~   72 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLS--SYLTVSASTWESGDTYTCQVTHEGL   72 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEE--EEEEEccccCCCCCEEEEEEEEcCC
Confidence            6899999555676 5999999999753211 111222334444422  2444444455566799999987653

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.30  E-value=3.3e-06  Score=54.95  Aligned_cols=77  Identities=12%  Similarity=0.074  Sum_probs=45.8

Q ss_pred             CCCceEEEeeCCCCC------CCCeEEEeEcCe------EeccCCCceEEecC--CCcccc----ccccccccccccccc
Q psy15128        212 SGETALLECGPPKGQ------PEPTLHWKKNGQ------FIDLESSKRVSILG--DPWFDS----RRSRSIFGSVLGALS  273 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~------p~~~~~W~~~g~------~~~~~~~~~~~~~~--~~~~~~----~~~~~l~i~~~~~~~  273 (292)
                      .|++++|.|.. ...      ....+.|+|...      .+............  .+....    ....+|.|..+...|
T Consensus         1 ~G~~vtL~C~~-~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D   79 (106)
T cd05877           1 RGGNVTLPCRY-HYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLED   79 (106)
T ss_pred             CCCcEEEEeEe-ECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHH
Confidence            48999999986 333      234799998531      11100111000000  011111    113468999999999


Q ss_pred             cceeEEEEeecccccc
Q psy15128        274 DDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       274 ~g~y~C~a~n~~g~~~  289 (292)
                      +|.|.|.+.+..|...
T Consensus        80 sG~Y~C~v~~~~~~~~   95 (106)
T cd05877          80 YGRYRCEVIDGLEDES   95 (106)
T ss_pred             CEEEEEEEEecccceE
Confidence            9999999999877654

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.27  E-value=5.8e-06  Score=51.84  Aligned_cols=69  Identities=20%  Similarity=0.348  Sum_probs=43.7

Q ss_pred             CCcEEEEEEEe-eeCCCeeEEEECCeEEe---eccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         51 NGIASFQCVAE-GSPLPSVFWTQEGSQVL---MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        51 g~~~~l~C~~~-~~~~~~v~W~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      |+.+.|.|.+. ++|.+.+.|+.++..+.   ...............+.|.+.....++...++|.+.+....
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            67999999765 47899999999987661   00000011111222346777766666777899999987543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.27  E-value=4.6e-06  Score=55.23  Aligned_cols=79  Identities=11%  Similarity=0.149  Sum_probs=48.9

Q ss_pred             CcceEEeCCCceEEEeeCCCC--CCCCeEEEeEc--CeE----eccCCCceEEe---cCCCcccc---c--ccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKG--QPEPTLHWKKN--GQF----IDLESSKRVSI---LGDPWFDS---R--RSRSIFGSV  268 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~--~p~~~~~W~~~--g~~----~~~~~~~~~~~---~~~~~~~~---~--~~~~l~i~~  268 (292)
                      +....+.+|++++|.|.+ .+  .+...+.|++.  |..    +..........   ...+.+..   .  ....|.|..
T Consensus         5 p~~~~~~~G~~v~l~C~~-~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   83 (116)
T cd04982           5 QLSITREESKSVTISCKV-SGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQN   83 (116)
T ss_pred             CCeEEeCCCCCEEEEEEE-eCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEE
Confidence            356778899999999997 55  56779999994  211    11111000000   00111111   1  234689999


Q ss_pred             ccccccceeEEEEeec
Q psy15128        269 LGALSDDQWKLIAKNI  284 (292)
Q Consensus       269 ~~~~~~g~y~C~a~n~  284 (292)
                      ++.+|+|.|.|.+...
T Consensus        84 ~~~~Dsg~Y~C~~~~~   99 (116)
T cd04982          84 LEKEDSATYYCAYWES   99 (116)
T ss_pred             CCHHHCEEEEEEEecC
Confidence            9999999999999753

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=98.25  E-value=1.4e-05  Score=50.34  Aligned_cols=70  Identities=11%  Similarity=0.230  Sum_probs=45.2

Q ss_pred             cCCcEEEEEEEeee-CC-CeeEEEECCeEEeeccC----CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         50 LNGIASFQCVAEGS-PL-PSVFWTQEGSQVLMFPG----NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        50 ~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      ..+.++|.|.+.|+ |. ..+.|++++..+.....    .......+...+.|.+......+...|+|.+.+....
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~   88 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT   88 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence            45678999999995 43 47899999886521100    0011113344556777766666778999999886543

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.25  E-value=8.2e-06  Score=52.20  Aligned_cols=71  Identities=21%  Similarity=0.361  Sum_probs=46.5

Q ss_pred             cEEecCCcEEEEEEEee-eCCCeeEEEECCeE----Eeecc----CCCcceeEEe-----eecEEEEccCCCCCCeEEEE
Q psy15128         46 QKVGLNGIASFQCVAEG-SPLPSVFWTQEGSQ----VLMFP----GNAYGHLHVT-----QEGTLRIQGVQKEDAGFFVC  111 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~----~~~~~----~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C  111 (292)
                      +.+.+|++++|.|.... .....+.|+|....    +....    .....+....     ....|+|.+++.+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            35778999999998865 34557899985421    11100    1112233332     22379999999999999999


Q ss_pred             EEEeC
Q psy15128        112 SALSV  116 (292)
Q Consensus       112 ~~~~~  116 (292)
                      .+...
T Consensus        82 ~~~~~   86 (98)
T cd05716          82 GVGDD   86 (98)
T ss_pred             EcccC
Confidence            98754

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.23  E-value=9.5e-06  Score=53.90  Aligned_cols=75  Identities=15%  Similarity=0.135  Sum_probs=48.2

Q ss_pred             CCCccEEecCCcEEEEEEEeeeC------CCeeEEEECCeE-----Eee-cc------CCCcceeEEe-----eecEEEE
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGSP------LPSVFWTQEGSQ-----VLM-FP------GNAYGHLHVT-----QEGTLRI   98 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~~------~~~v~W~~~~~~-----~~~-~~------~~~~~~~~~~-----~~~~l~i   98 (292)
                      .|..+.+.+|+.++|.|.+....      ...+.|++....     +.. ..      ....+++...     .+..|.|
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I   84 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI   84 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence            34556788999999999875321      235899985321     111 01      0111333331     1347999


Q ss_pred             ccCCCCCCeEEEEEEEeC
Q psy15128         99 QGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        99 ~~~~~~d~g~Y~C~~~~~  116 (292)
                      .+++.+|+|.|.|.+...
T Consensus        85 ~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          85 SDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             ccCChhhCeEEEEEEEcC
Confidence            999999999999998653

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.23  E-value=4.6e-06  Score=52.73  Aligned_cols=67  Identities=13%  Similarity=0.115  Sum_probs=44.6

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK  282 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~  282 (292)
                      ...+..|++|+|.|.. .. +...|.|+|+|.....     ... ... ........+.|..+...|+|.|+|...
T Consensus         9 ~~vV~~G~~VTL~C~~-~~-~~~~f~l~k~g~~~~~-----~~~-~~~-~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711           9 SPVVPSGENVTLQCHS-DI-RFDRFILYKEGRSKPV-----LHL-YEK-HHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CCccCCCCeEEEEEec-CC-CCCEEEEEECCCCCCc-----eec-ccc-cCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            4567899999999985 32 5568999998864321     000 000 001122257899999999999999974

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.23  E-value=1.2e-05  Score=52.37  Aligned_cols=68  Identities=22%  Similarity=0.405  Sum_probs=43.6

Q ss_pred             EEecCCcEEEEEEEeee-CCCeeEEEECCeE-----E----eeccC--------CCcceeEEe--e---ecEEEEccCCC
Q psy15128         47 KVGLNGIASFQCVAEGS-PLPSVFWTQEGSQ-----V----LMFPG--------NAYGHLHVT--Q---EGTLRIQGVQK  103 (292)
Q Consensus        47 ~~~~g~~~~l~C~~~~~-~~~~v~W~~~~~~-----~----~~~~~--------~~~~~~~~~--~---~~~l~i~~~~~  103 (292)
                      .+.+|++++|.|.+.+. ....+.|||....     +    .....        ....+....  .   ...|+|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            46789999999998653 3447999985321     0    00000        001222221  1   23699999999


Q ss_pred             CCCeEEEEEEE
Q psy15128        104 EDAGFFVCSAL  114 (292)
Q Consensus       104 ~d~g~Y~C~~~  114 (292)
                      +|+|.|.|...
T Consensus        82 ~Dsg~YyCa~~   92 (107)
T cd07700          82 EDSGTYFCMTV   92 (107)
T ss_pred             HHCEEEEEeEc
Confidence            99999999975

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=98.22  E-value=3e-06  Score=53.30  Aligned_cols=76  Identities=16%  Similarity=0.121  Sum_probs=45.8

Q ss_pred             CCCceEEEeeCCCCCCC-CeEEEeEcCeEeccC-CCceEEecCCCccccccccccccccccccccceeEEEEeecccccc
Q psy15128        212 SGETALLECGPPKGQPE-PTLHWKKNGQFIDLE-SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  289 (292)
                      .++.++|.|.|...+|. ..++|.++|+.+... .........++.|...  ..|.+..-...+...|+|.+........
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~--S~L~v~~~~w~~~~~ytC~V~H~~~~~~   90 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTT--SELNVTQEDWKSGKTYTCKVTHQGTTFE   90 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEE--EEEEEchHHhcCCCeEEEEEEECCeeee
Confidence            45668999999555665 589999999987422 1112223334433322  2333333333345699999998776544

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.22  E-value=3.2e-06  Score=54.34  Aligned_cols=27  Identities=4%  Similarity=-0.114  Sum_probs=23.6

Q ss_pred             cccccccccccccceeEEEEeeccccc
Q psy15128        262 RSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       262 ~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      .+|.|..+...|+|.|+|.+.|..|.+
T Consensus        65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~   91 (100)
T cd05713          65 VALRIHNVRASDEGLYTCFFQSDGFYE   91 (100)
T ss_pred             EEEEEEcCChhhCEEEEEEEecCCcEE
Confidence            468999999999999999999877654

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>PHA03270 envelope glycoprotein C; Provisional

Probab=98.21  E-value=0.00034  Score=55.07  Aligned_cols=204  Identities=17%  Similarity=0.205  Sum_probs=108.8

Q ss_pred             cccCCcCCCeeEEEEEEecccc-cccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCC---eeEEEECCeEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGE-RETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLP---SVFWTQEGSQV   77 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~v~W~~~~~~~   77 (292)
                      |..++.+.+|.|+=...+..+. ...+.+.+....+|.+.+.+.  .+.+|+...-.|.+..+.++   .+.|++++..+
T Consensus       186 I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V  263 (466)
T PHA03270        186 IQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEV  263 (466)
T ss_pred             EEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCccc
Confidence            6788899999999887665443 223336677777888766654  37889999999999875333   68999999876


Q ss_pred             eeccCCCcceeEEe-----eecEEEEccCCCC-CCeEEEEEEEeCCcCe-eEEEEEEEEeecCCCCCeEEeCCCCceecC
Q psy15128         78 LMFPGNAYGHLHVT-----QEGTLRIQGVQKE-DAGFFVCSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQTLPL  150 (292)
Q Consensus        78 ~~~~~~~~~~~~~~-----~~~~l~i~~~~~~-d~g~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~  150 (292)
                      ..... ........     ..+.|++...... ..-..+|.+.-..... ....+-.+. ...++.|.+.+     .+..
T Consensus       264 ~~~~~-i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~-P~VY~~P~Isv-----~F~d  336 (466)
T PHA03270        264 FAPER-VRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGA-PTVLPRPTIEM-----EFGG  336 (466)
T ss_pred             cCcce-eeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeeccccc-CccccCCeEEE-----EEeC
Confidence            32111 11111111     2223444333221 1236899987432222 111111111 11123444433     2223


Q ss_pred             CCeEEEEeEeccCC-CCceEEEeCCeeCCCCCccEE----EcCCCcEEEEeeecCCCCCCcceEEeCCCceEEEeeCCCC
Q psy15128        151 HSVAFLPCQAVGSP-PPHIRWYKNGNSLPPEDTRIN----VSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKG  225 (292)
Q Consensus       151 g~~v~l~C~~~~~p-~~~~~W~~~~~~l~~~~~~~~----~~~~~~l~i~~~~~~d~g~~~~~~~~~g~~~~l~C~~~~~  225 (292)
                      |+   ..|.+.--| ...+.|+-++......+..+.    ....+...|.+...          +.. +.+..+|.. .|
T Consensus       337 G~---AVCtA~CVPegV~l~W~V~D~~~pa~~~~v~~G~C~~~PGlvNlrS~~p----------lSd-~~~eYTCrl-~G  401 (466)
T PHA03270        337 DE---AVCTAACVPEGVTLAWLLGADPAPAEKAAVAGGPCPGRPGLARVRSALP----------LSR-EHSEYTCRL-VG  401 (466)
T ss_pred             CE---EEEeccccCCCCEEEEEecCCCCCCccceeecccCCCCCCceeeecccc----------ccc-CCceEEEEE-ee
Confidence            33   356654433 457999987766544322111    11223334433211          111 347899997 89


Q ss_pred             CCCC
Q psy15128        226 QPEP  229 (292)
Q Consensus       226 ~p~~  229 (292)
                      +|..
T Consensus       402 YP~~  405 (466)
T PHA03270        402 YPAT  405 (466)
T ss_pred             cCCC
Confidence            8855

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=98.21  E-value=6.5e-06  Score=51.91  Aligned_cols=72  Identities=21%  Similarity=0.149  Sum_probs=46.0

Q ss_pred             eCCCceEEEeeCCCCCCCC-eEEEeEcCeEeccC-CCceEEecCCCccccccccccccccccccccceeEEEEeecccc
Q psy15128        211 ASGETALLECGPPKGQPEP-TLHWKKNGQFIDLE-SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQ  287 (292)
Q Consensus       211 ~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~  287 (292)
                      ..|+.++|.|.|...+|.. .+.|+++|+.+... .........++.|....  .|.   +...+...|+|.+......
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s--~L~---~~~~~~~~ysC~V~H~~l~   85 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILV--MLE---TTPSRGDTYTCVVEHSSLQ   85 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEE--EEE---EcCCCCCEEEEEEEeCCCC
Confidence            4688899999995557766 89999999987532 12233334444444332  222   2334556999999986544

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>PHA03273 envelope glycoprotein C; Provisional

Probab=98.20  E-value=0.00045  Score=54.95  Aligned_cols=206  Identities=17%  Similarity=0.144  Sum_probs=107.9

Q ss_pred             cccCCcCCCeeEEEEEEecccccccc-cEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCC---eeEEEECCeEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETK-PALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLP---SVFWTQEGSQV   77 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~-~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~v~W~~~~~~~   77 (292)
                      |..++..++|.|+=.+.+..+..... .+.+....+|.+.+.+.  .+.+|+...-.|.+..+.++   .+.|++++..+
T Consensus       202 I~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V  279 (486)
T PHA03273        202 IKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEV  279 (486)
T ss_pred             EEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCeec
Confidence            67889999999986654544432222 24555577887766654  47889999999999875332   69999999876


Q ss_pred             eeccCCCccee-----EEeeecEEEEccCCC-CCCeEEEEEEEeCCcC-eeEEEEEEEEeecCCCCCeEEeCCCCceecC
Q psy15128         78 LMFPGNAYGHL-----HVTQEGTLRIQGVQK-EDAGFFVCSALSVAGS-TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPL  150 (292)
Q Consensus        78 ~~~~~~~~~~~-----~~~~~~~l~i~~~~~-~d~g~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~  150 (292)
                      ...........     .+...+.|++..... +..-..+|.+.-.... ......-.+. ...++.|.+.+     .+..
T Consensus       280 ~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~-P~Vy~~P~Is~-----~F~~  353 (486)
T PHA03273        280 DFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGT-PSVFVAPTVSV-----TVED  353 (486)
T ss_pred             cccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeecccccc-CccccCCeEEE-----EEeC
Confidence            41111111111     112233455555332 3334689998743222 2211111111 11123444433     2223


Q ss_pred             CCeEEEEeEeccCCC--CceEEEeCCeeCCCCCcc-E----EEcCCCcEEEEeeecCCCCCCcceEEeCCCceEEEeeCC
Q psy15128        151 HSVAFLPCQAVGSPP--PHIRWYKNGNSLPPEDTR-I----NVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPP  223 (292)
Q Consensus       151 g~~v~l~C~~~~~p~--~~~~W~~~~~~l~~~~~~-~----~~~~~~~l~i~~~~~~d~g~~~~~~~~~g~~~~l~C~~~  223 (292)
                      |+   ..|.+.--|.  ..+.|+-++ .++..... .    -....+...|.+...         .-...+.+..+|.. 
T Consensus       354 G~---AVCtA~CVP~egV~l~W~v~D-~~p~a~~~~~~tG~C~~~PglvNlrS~~p---------ls~~dgp~eYTCrl-  419 (486)
T PHA03273        354 GD---AVCTAKCVPSTGVFVSWSVND-HLPGVPSQDMTTGVCSSHPGLVNMQSRRP---------LSEENGEREYSCII-  419 (486)
T ss_pred             CE---EEEecccccCCCeeEEEEccC-CCCCCcccccccccCCCCCCceeeecccc---------ccccCCceeEEEEE-
Confidence            33   3577655544  679999766 22211111 0    011122333433210         01123667899997 


Q ss_pred             CCCCCC
Q psy15128        224 KGQPEP  229 (292)
Q Consensus       224 ~~~p~~  229 (292)
                      .|+|..
T Consensus       420 ~GYP~~  425 (486)
T PHA03273        420 EGYPDG  425 (486)
T ss_pred             eecCCC
Confidence            898855

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.20  E-value=1.1e-05  Score=50.80  Aligned_cols=77  Identities=13%  Similarity=0.176  Sum_probs=46.3

Q ss_pred             CCcEEEEEEE-eeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128         51 NGIASFQCVA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  127 (292)
Q Consensus        51 g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~  127 (292)
                      .....+.|.+ .|.|.+.|.|+++....................+.|.+.....+|...|+|++.+..........+.
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~   92 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSVT   92 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence            3456889988 4689999999997211110000011111233345788877777777789999998765554444433

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.20  E-value=3.9e-05  Score=48.42  Aligned_cols=66  Identities=21%  Similarity=0.301  Sum_probs=39.3

Q ss_pred             CCcEEEEEEEeee-CCC-eeEEEECCeEEeeccCC-C---cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         51 NGIASFQCVAEGS-PLP-SVFWTQEGSQVLMFPGN-A---YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        51 g~~~~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~-~---~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      ++.++|.|.+.|+ |.. .+.|++++......... .   .....+...+.|.+..   .+.+.|+|.+.+....
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~---~~~~~ytC~V~H~~~~   85 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP---EDKARYSCRVEHSGLK   85 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC---CCCCEEEEEEEeCCCC
Confidence            6789999999996 443 89999998532111000 0   0111122223444443   4778999999876543

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.20  E-value=5.7e-06  Score=52.93  Aligned_cols=75  Identities=17%  Similarity=0.137  Sum_probs=46.9

Q ss_pred             eEEeCCCceEEEeeCCCCCCCCeEEEeEcCe-----Eec------cCCCceEEecCCCccccccccccccccccccccce
Q psy15128        208 TRVASGETALLECGPPKGQPEPTLHWKKNGQ-----FID------LESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQ  276 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~-----~~~------~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~  276 (292)
                      +.+.+|++++|.|..........+.|++...     .+.      .....++.+..+.   ......|.|..++.+|+|.
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~v~~~DsG~   78 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDP---DNGVFTVTLNQLRKEDAGW   78 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecC---CCCEEEEEEcCCCHHHCEE
Confidence            4678999999999973334556889998531     110      0011122211110   0123468899999999999


Q ss_pred             eEEEEeecc
Q psy15128        277 WKLIAKNIR  285 (292)
Q Consensus       277 y~C~a~n~~  285 (292)
                      |.|.+.+..
T Consensus        79 Y~C~~~~~~   87 (98)
T cd05716          79 YWCGVGDDG   87 (98)
T ss_pred             EEEEcccCC
Confidence            999998754

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.20  E-value=1.8e-05  Score=52.33  Aligned_cols=73  Identities=16%  Similarity=0.285  Sum_probs=47.1

Q ss_pred             CCccEEecCCcEEEEEEEeeeC--CCeeEEEECCe---EEee---c--------cCCCcceeEEeee-----cEEEEccC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSP--LPSVFWTQEGS---QVLM---F--------PGNAYGHLHVTQE-----GTLRIQGV  101 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~---~~~~---~--------~~~~~~~~~~~~~-----~~l~i~~~  101 (292)
                      |....+.+|++++|.|...+..  ...+.|||...   ...+   .        ......++.....     ..|+|.++
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   83 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL   83 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence            4456788999999999876432  45699998431   1110   0        0111233333211     26999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy15128        102 QKEDAGFFVCSALS  115 (292)
Q Consensus       102 ~~~d~g~Y~C~~~~  115 (292)
                      ..+|+|.|.|.+..
T Consensus        84 ~~~Dsa~YyCa~~~   97 (117)
T cd04981          84 TPEDTAVYYCARGL   97 (117)
T ss_pred             CHHHCEEEEEEEEc
Confidence            99999999998754

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=98.18  E-value=6.1e-06  Score=51.66  Aligned_cols=70  Identities=19%  Similarity=0.176  Sum_probs=44.3

Q ss_pred             CCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        212 SGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      .|+..+|.|.|...+|.. .++|++||+.+.......+...+++.|.....  |   .+.+.+...|.|.+....-
T Consensus        14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~--l---~~~~~~~~~ysC~V~H~~l   84 (93)
T cd05770          14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKS--T---EFTPTKGDEYACRVRHNSM   84 (93)
T ss_pred             CCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEE--E---EECCCCCCeEEEEEEECCC
Confidence            456678999994446644 88999999998622222344455554443321  1   3345567799999987543

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.18  E-value=6.6e-06  Score=51.94  Aligned_cols=70  Identities=11%  Similarity=0.149  Sum_probs=43.1

Q ss_pred             CCceEEEeeCCCCCCCC-eEEEeEcCeEeccC-CCceEEecCCCccccccccccccccccccccceeEEEEeecccc
Q psy15128        213 GETALLECGPPKGQPEP-TLHWKKNGQFIDLE-SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQ  287 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~  287 (292)
                      ++.++|.|.+...+|+. .++|.++|+.+... ........+++.|...  ..|.   +...+.+.|+|.+.+..-.
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~--s~l~---v~~~~~~~ytC~V~H~~~~   85 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLW--VTLE---VPPEDKARYSCRVEHSGLK   85 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEE--EEEE---ECCCCCCEEEEEEEeCCCC
Confidence            67899999994445654 99999999643211 2223444445444422  1222   3334778999999876543

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.17  E-value=8e-06  Score=53.08  Aligned_cols=73  Identities=18%  Similarity=0.252  Sum_probs=45.1

Q ss_pred             EeCCCceEEEeeCCCCCCC-CeEEEeEcCeEeccCCCceEEecCCC-ccccccccccccccccccccc-eeEEEEeeccc
Q psy15128        210 VASGETALLECGPPKGQPE-PTLHWKKNGQFIDLESSKRVSILGDP-WFDSRRSRSIFGSVLGALSDD-QWKLIAKNIRN  286 (292)
Q Consensus       210 ~~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~~g-~y~C~a~n~~g  286 (292)
                      ...|+.++|.|.|...+|. ..++|++||+.+... ........++ .|...  ..|.+. ....|.| .|+|.+.+..-
T Consensus        18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~-~~~~~p~~d~~ty~~~--S~L~~~-~~~~d~~~~ytC~V~H~~l   93 (111)
T cd05772          18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAE-QPNITPEGDSVSYNVT--STVQVK-LTEDDVHSQVTCEVQHRTL   93 (111)
T ss_pred             cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccc-ccceeeCCCCCcEEEE--EEEEEE-CccccccCceEEEEEeCCC
Confidence            4467889999999666775 599999999998532 1222222332 33322  233333 2344444 69999998653

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=98.17  E-value=3.2e-06  Score=55.13  Aligned_cols=76  Identities=16%  Similarity=0.199  Sum_probs=46.2

Q ss_pred             CCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCc-eEEecCC-Cccccccccccccccccccc-cceeEEEEeecccc
Q psy15128        212 SGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSK-RVSILGD-PWFDSRRSRSIFGSVLGALS-DDQWKLIAKNIRNQ  287 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~-~~~~~~~-~~~~~~~~~~l~i~~~~~~~-~g~y~C~a~n~~g~  287 (292)
                      .++.++|.|.|...+|.. .+.|++||+.+...... ......+ +.|..  ...|.+..-...+ ...|+|.+......
T Consensus        17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~--~S~L~v~~~~w~~~~~~ytC~V~H~g~~   94 (115)
T cd05769          17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSI--SSRLRVSATEWFNPRNTFTCIVQFYGGT   94 (115)
T ss_pred             cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEE--EEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence            467799999995557764 89999999988532211 1222222 33332  2344444433334 45899999887655


Q ss_pred             cc
Q psy15128        288 QQ  289 (292)
Q Consensus       288 ~~  289 (292)
                      ..
T Consensus        95 ~~   96 (115)
T cd05769          95 DT   96 (115)
T ss_pred             cc
Confidence            44

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.17  E-value=3.1e-05  Score=48.82  Aligned_cols=71  Identities=21%  Similarity=0.438  Sum_probs=44.0

Q ss_pred             CcEEEEEEEeee-CCCeeEEEECCe----EEeecc--------CCCcceeEEe----eecEEEEccCCCCCCeEEEEEEE
Q psy15128         52 GIASFQCVAEGS-PLPSVFWTQEGS----QVLMFP--------GNAYGHLHVT----QEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        52 ~~~~l~C~~~~~-~~~~v~W~~~~~----~~~~~~--------~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      +.++|.|..... ....+.|.|...    .+....        ..-.++..+.    .+.+|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            468999987532 344788988432    222211        1111333332    34689999999999999999987


Q ss_pred             eC-CcCeeE
Q psy15128        115 SV-AGSTTV  122 (292)
Q Consensus       115 ~~-~~~~~~  122 (292)
                      .. .|..+.
T Consensus        81 t~P~g~~~~   89 (96)
T cd05889          81 TYPQGSWEK   89 (96)
T ss_pred             eCCCCCeEE
Confidence            53 444443

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.17  E-value=3.9e-05  Score=46.20  Aligned_cols=64  Identities=17%  Similarity=0.279  Sum_probs=41.3

Q ss_pred             EEEEEEEeee-CC-CeeEEEECCeEEeeccCC----CcceeEEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         54 ASFQCVAEGS-PL-PSVFWTQEGSQVLMFPGN----AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        54 ~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      ++|.|.+.|+ |. ..+.|++++..+......    ......+...+.|.+.....++...|+|.+.+..
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            6899999996 54 489999998763210000    0011123334467777777778889999998754

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.17  E-value=4.3e-06  Score=51.59  Aligned_cols=72  Identities=18%  Similarity=0.174  Sum_probs=47.3

Q ss_pred             CCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCceEEe-cCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128        212 SGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSI-LGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      .++.+.|.|.|...+|.. .|.|+++|+.+.......... ..++.|....  .|.+.   ..+...|+|.++......
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s--~l~v~---~~~~~~ysC~V~H~~l~~   80 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTS--SLTVT---WNSGDEYSCRVTHESLPE   80 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEE--EEEEE---TTTTGGEEEEEEETTSSS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeE--EEEec---CCCCCEEEEEEEECCCCC
Confidence            488999999995556655 899999999886333222222 4566555432  22222   555569999999876543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd00096 Ig Immunoglobulin domain

Probab=98.17  E-value=8e-06  Score=48.45  Aligned_cols=69  Identities=22%  Similarity=0.274  Sum_probs=45.6

Q ss_pred             eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128        216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      +.|.|.+ .+.+...+.|++++.........   ..............|.+..+...|.|.|.|.+.+..+..
T Consensus         1 ~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~   69 (74)
T cd00096           1 VTLTCLA-SGPPPPTITWLKNGKPLPSSVLT---RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGTV   69 (74)
T ss_pred             CEEEEEe-cCCCCCcEEEEECCEECCCcccE---EeccccCcceeEEEEEECccCcccCcEEEEEEecCcCcE
Confidence            4689998 56788899999988765322111   000111112233467888888999999999999876444

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.16  E-value=7.9e-06  Score=54.09  Aligned_cols=77  Identities=18%  Similarity=0.182  Sum_probs=48.2

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--CeE---ecc-------CCCceEEecCCCcccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQF---IDL-------ESSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~---~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                      +..+.+.+|++|+|.|..........+.|++.  +..   +..       ....|+.+..+   .......|.|..+..+
T Consensus         6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~---~~~~~~sL~I~~~~~~   82 (116)
T cd07706           6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQ---KAQKSISLTISALQLE   82 (116)
T ss_pred             CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEe---ccCCEEEEEECCCCHH
Confidence            35678899999999999733334568999983  211   100       00112222100   0012346899999999


Q ss_pred             ccceeEEEEeec
Q psy15128        273 SDDQWKLIAKNI  284 (292)
Q Consensus       273 ~~g~y~C~a~n~  284 (292)
                      |+|.|.|.+...
T Consensus        83 Dsg~Y~C~~~~~   94 (116)
T cd07706          83 DSAKYFCALSTL   94 (116)
T ss_pred             HCEEEEEEEECC
Confidence            999999999853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.16  E-value=6.5e-06  Score=53.61  Aligned_cols=75  Identities=13%  Similarity=0.175  Sum_probs=45.0

Q ss_pred             CCCceEEEeeCCCCCC-----------CCeEEEeEc--Ce-E-eccCCCc----------eEEecCCCcccccccccccc
Q psy15128        212 SGETALLECGPPKGQP-----------EPTLHWKKN--GQ-F-IDLESSK----------RVSILGDPWFDSRRSRSIFG  266 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p-----------~~~~~W~~~--g~-~-~~~~~~~----------~~~~~~~~~~~~~~~~~l~i  266 (292)
                      .|++++|.|......+           .+.|.|+|-  |+ + +......          |+.+....  .......|.|
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~--~~~~~asL~I   78 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYP--AIPSDATLEI   78 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccC--CCCCCcEEEE
Confidence            4899999999633221           459999983  21 1 1101111          22221100  0113457999


Q ss_pred             ccccccccceeEEEEeeccccc
Q psy15128        267 SVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       267 ~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      .+++..|+|+|+|.+.+.....
T Consensus        79 ~nl~~sDsG~Y~C~V~~g~~~~  100 (112)
T cd05900          79 TELRSNDSGTYRCEVMHGIEDN  100 (112)
T ss_pred             eecccccCEEEEEEEecCCCCc
Confidence            9999999999999999665443

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.15  E-value=1.5e-05  Score=51.44  Aligned_cols=68  Identities=18%  Similarity=0.381  Sum_probs=44.2

Q ss_pred             EEecCCcEEEEEEEeeeCCCeeEEEECCeE-------EeeccC--C--------CcceeEE---eeecEEEEccCCCCCC
Q psy15128         47 KVGLNGIASFQCVAEGSPLPSVFWTQEGSQ-------VLMFPG--N--------AYGHLHV---TQEGTLRIQGVQKEDA  106 (292)
Q Consensus        47 ~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~-------~~~~~~--~--------~~~~~~~---~~~~~l~i~~~~~~d~  106 (292)
                      .+.+|++++|.|.........+.|+|....       +.....  .        ...+...   .....|+|.+++.+|+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            356899999999886544557999985422       111111  0        0122222   1223699999999999


Q ss_pred             eEEEEEEE
Q psy15128        107 GFFVCSAL  114 (292)
Q Consensus       107 g~Y~C~~~  114 (292)
                      |.|.|.+.
T Consensus        82 gtY~Ca~~   89 (104)
T cd05720          82 GYYFCSVA   89 (104)
T ss_pred             EEEEEEEc
Confidence            99999875

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.13  E-value=4.9e-06  Score=53.18  Aligned_cols=74  Identities=12%  Similarity=0.056  Sum_probs=45.6

Q ss_pred             eCCCceEEEeeCCCCCC-CCeEEEeEcCeEeccCCC-ceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        211 ASGETALLECGPPKGQP-EPTLHWKKNGQFIDLESS-KRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       211 ~~g~~~~l~C~~~~~~p-~~~~~W~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      ..++.++|.|.|...+| ...+.|++||+.+..... .......++.|...  ..|.+..-...+...|+|.+....-
T Consensus        15 ~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~--s~L~v~~~~w~~~~~~sC~V~H~~l   90 (100)
T cd07699          15 EKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLS--SYLTLTKSDWNKHKVYTCEVTHEGL   90 (100)
T ss_pred             ccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEE--EEEEEcHHHhCCCCeEEEEEEecCC
Confidence            35778999999955576 558999999998842211 12233334444432  2333333333345699999987653

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd00096 Ig Immunoglobulin domain

Probab=98.10  E-value=2.4e-05  Score=46.34  Aligned_cols=64  Identities=27%  Similarity=0.462  Sum_probs=44.6

Q ss_pred             EEEEEEEeeeCCCeeEEEECCeEEeeccC--CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPG--NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      +.|.|.+.+.+...+.|++++........  .............|.|.++...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            46899998867779999998765432111  01112223445579999999999999999998754

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.10  E-value=4e-05  Score=48.46  Aligned_cols=76  Identities=13%  Similarity=0.180  Sum_probs=46.0

Q ss_pred             ccEEecCCcEEEEEEEeee-CCC--eeEEEECCeEEeeccC---CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128         45 DQKVGLNGIASFQCVAEGS-PLP--SVFWTQEGSQVLMFPG---NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG  118 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~-~~~--~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~  118 (292)
                      .-.+..|+.++|.|.+.|+ .++  .++|.|+++.......   .......+...+.|.+......+...|+|.+.+...
T Consensus         8 ~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l   87 (96)
T cd07696           8 PKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL   87 (96)
T ss_pred             HHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence            3345568999999999998 333  6899998753321110   011111233344566665555556689999988754


Q ss_pred             Ce
Q psy15128        119 ST  120 (292)
Q Consensus       119 ~~  120 (292)
                      ..
T Consensus        88 ~~   89 (96)
T cd07696          88 PT   89 (96)
T ss_pred             CC
Confidence            43

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03273 envelope glycoprotein C; Provisional

Probab=98.09  E-value=0.0011  Score=52.84  Aligned_cols=79  Identities=23%  Similarity=0.371  Sum_probs=56.1

Q ss_pred             EEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC--ceEEE
Q psy15128         95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP--HIRWY  171 (292)
Q Consensus        95 ~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~--~~~W~  171 (292)
                      .|.|..++..++|.|+-...+..+......++.|.-   ..+|.+.+.+.  .+.+|+...-.|.+..+ |+-  .+.|+
T Consensus       199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~---yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf  273 (486)
T PHA03273        199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVST---YNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWY  273 (486)
T ss_pred             ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEE---ecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEE
Confidence            499999999999999977655444434445555432   23555555433  47799999999999666 432  59999


Q ss_pred             eCCeeCC
Q psy15128        172 KNGNSLP  178 (292)
Q Consensus       172 ~~~~~l~  178 (292)
                      .|+.++.
T Consensus       274 ~dg~~V~  280 (486)
T PHA03273        274 KNAKEVD  280 (486)
T ss_pred             eCCeecc
Confidence            9999887

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.08  E-value=1.5e-05  Score=51.99  Aligned_cols=74  Identities=15%  Similarity=0.108  Sum_probs=43.2

Q ss_pred             CCCceEEEeeCCCCCC---------CCeEEEeEc--CeEe--ccCCCceEEec--CCCccc------ccccccccccccc
Q psy15128        212 SGETALLECGPPKGQP---------EPTLHWKKN--GQFI--DLESSKRVSIL--GDPWFD------SRRSRSIFGSVLG  270 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p---------~~~~~W~~~--g~~~--~~~~~~~~~~~--~~~~~~------~~~~~~l~i~~~~  270 (292)
                      .|++++|.|......+         ...+.|++.  ++..  ....+......  -.+...      ......|.|..++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            4899999999733222         257999984  2221  10111111110  001111      1123469999999


Q ss_pred             ccccceeEEEEeecc
Q psy15128        271 ALSDDQWKLIAKNIR  285 (292)
Q Consensus       271 ~~~~g~y~C~a~n~~  285 (292)
                      ..|+|.|.|.+....
T Consensus        81 ~sD~G~Y~C~v~~~~   95 (110)
T cd05878          81 SSDSGVYRCEVMHGI   95 (110)
T ss_pred             hhhCEEEEEEEEeCC
Confidence            999999999998754

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=98.07  E-value=1.9e-05  Score=49.63  Aligned_cols=76  Identities=12%  Similarity=0.145  Sum_probs=45.7

Q ss_pred             CcEEEEEEEe-eeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128         52 GIASFQCVAE-GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  127 (292)
Q Consensus        52 ~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~  127 (292)
                      ..+.+.|.+. +.|.+.|.|+++....................+.|.+.....+|...|+|++.+..........+.
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~   92 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVT   92 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence            3578999775 578999999987321110000000111223345677877777777789999998765554444443

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.07  E-value=3e-05  Score=49.68  Aligned_cols=73  Identities=18%  Similarity=0.222  Sum_probs=45.8

Q ss_pred             EEecCCcEEEEEEEeeeCCC--eeEEEECCeEEeeccC----CC-c--ceeEEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         47 KVGLNGIASFQCVAEGSPLP--SVFWTQEGSQVLMFPG----NA-Y--GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        47 ~~~~g~~~~l~C~~~~~~~~--~v~W~~~~~~~~~~~~----~~-~--~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      .+..++.++|.|.+.|+.+.  .+.|++++..+.....    .. .  +...+...+.|.+..-...+...|+|.+.+..
T Consensus        12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~   91 (102)
T cd05768          12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA   91 (102)
T ss_pred             HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence            34457789999999996433  6799999987532110    00 0  01233344567776555556678999998765


Q ss_pred             cC
Q psy15128        118 GS  119 (292)
Q Consensus       118 ~~  119 (292)
                      ..
T Consensus        92 l~   93 (102)
T cd05768          92 LP   93 (102)
T ss_pred             CC
Confidence            43

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03269 envelope glycoprotein C; Provisional

Probab=98.07  E-value=0.0014  Score=52.51  Aligned_cols=93  Identities=16%  Similarity=0.256  Sum_probs=59.4

Q ss_pred             EEEEccCCCCCCeEEEEEEEeC-CcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC--ceEE
Q psy15128         95 TLRIQGVQKEDAGFFVCSALSV-AGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP--HIRW  170 (292)
Q Consensus        95 ~l~i~~~~~~d~g~Y~C~~~~~-~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~--~~~W  170 (292)
                      .|.|.+++..++|.|+-++.+. .+......++.|..   ...|.+.+.+  ..+.+|+...-.|.+..+ |+-  .+.|
T Consensus       290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~---yr~PsVsV~p--~PVL~Ge~YkAtC~vA~YYPp~SvrlrW  364 (566)
T PHA03269        290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMS---YKRPNITVIG--DPVLLGNPYAAYCKVNKYYPPHSVIVKW  364 (566)
T ss_pred             ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEE---ecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEE
Confidence            5999999999999998776532 22333334444443   2244554433  347799999999999666 432  5999


Q ss_pred             EeCCeeCCCCC--ccEEEcCCCcE
Q psy15128        171 YKNGNSLPPED--TRINVSSSGSL  192 (292)
Q Consensus       171 ~~~~~~l~~~~--~~~~~~~~~~l  192 (292)
                      +.|+.++....  .......+|.+
T Consensus       365 f~ng~~V~~~~it~t~~~~~dGlF  388 (566)
T PHA03269        365 TSNFGNIGKNFITDAIKENADGLF  388 (566)
T ss_pred             EeCCcccCccccccceeecCCCce
Confidence            99988887522  22233455544

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.06  E-value=1.5e-05  Score=51.09  Aligned_cols=28  Identities=4%  Similarity=-0.072  Sum_probs=23.4

Q ss_pred             ccccccccccccccceeEEEEee-ccccc
Q psy15128        261 SRSIFGSVLGALSDDQWKLIAKN-IRNQQ  288 (292)
Q Consensus       261 ~~~l~i~~~~~~~~g~y~C~a~n-~~g~~  288 (292)
                      ..+|.|..++.+|+|.|.|.+.+ ..|..
T Consensus        63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~   91 (100)
T cd05888          63 DGALILRNAVQADEGKYKCRVITFPAGNF   91 (100)
T ss_pred             ceEEEEecCccccceEEEEEEEeCCCCCe
Confidence            34699999999999999999998 55543

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.05  E-value=1.9e-05  Score=50.16  Aligned_cols=28  Identities=11%  Similarity=-0.050  Sum_probs=24.2

Q ss_pred             cccccccccccccceeEEEEee-cccccc
Q psy15128        262 RSIFGSVLGALSDDQWKLIAKN-IRNQQQ  289 (292)
Q Consensus       262 ~~l~i~~~~~~~~g~y~C~a~n-~~g~~~  289 (292)
                      .+|.|.+++.+|+|.|.|.+.| +.|+.+
T Consensus        63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~   91 (99)
T cd05886          63 GTISLSRLELEDEGVYICEFATFPTGNRE   91 (99)
T ss_pred             ceEEEcCCccccCEEEEEEEEeCCCCCeE
Confidence            5789999999999999999999 677543

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.04  E-value=2.2e-05  Score=50.07  Aligned_cols=75  Identities=15%  Similarity=0.023  Sum_probs=41.4

Q ss_pred             CCceEEEeeCCCCCCCCeEEEeEcCe----Eec-c--CCCceEEecCCCcc----ccccccccccccccccccceeEEEE
Q psy15128        213 GETALLECGPPKGQPEPTLHWKKNGQ----FID-L--ESSKRVSILGDPWF----DSRRSRSIFGSVLGALSDDQWKLIA  281 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~~~~W~~~g~----~~~-~--~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~~~g~y~C~a  281 (292)
                      |++++|.|........-.+.|++...    .+. .  ..+....-...+..    .......|.|.++..+|+|.|.|..
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            78999999853332223799998421    110 0  01111000000000    0123356999999999999999998


Q ss_pred             e-ecccc
Q psy15128        282 K-NIRNQ  287 (292)
Q Consensus       282 ~-n~~g~  287 (292)
                      . .+.|.
T Consensus        81 ~~~p~g~   87 (97)
T cd05846          81 NTFPDGS   87 (97)
T ss_pred             EeCCCCC
Confidence            7 34443

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.04  E-value=2.2e-05  Score=49.46  Aligned_cols=70  Identities=11%  Similarity=0.176  Sum_probs=41.7

Q ss_pred             CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccc-eeEEEEeeccccc
Q psy15128        213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDD-QWKLIAKNIRNQQ  288 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~a~n~~g~~  288 (292)
                      .....+.|.+..|.|.+.|.|+++   +............++.+..  ...|.+ ....+|.| .|+|.|.|..-..
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~~~---~~~~~~~~~~~~~~g~~tv--~S~l~~-~p~~~d~G~~~tC~v~h~~l~~   85 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWETT---LGGEAETQSKENPNGTVTV--TSEYRL-VPSREANGKELTCVVSHPTLQE   85 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEEeC---CCCcceeEeecCCCCCEEE--EEEEEE-ecCHHHCCCEEEEEEeCcccCC
Confidence            445778999988999999999997   2111111222223332222  223333 34455555 8999999986443

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.04  E-value=3e-05  Score=54.08  Aligned_cols=74  Identities=14%  Similarity=0.227  Sum_probs=48.5

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEec-cC-CC--------ceEEecCCCccccccccccccccccccccc
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID-LE-SS--------KRVSILGDPWFDSRRSRSIFGSVLGALSDD  275 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~-~~-~~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g  275 (292)
                      ...++.+|++++|.|....+...+.+.|+|..+.+. .. .+        .|+.+...+    .....|.|..+..+|+|
T Consensus        23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s----~~~StItIknVt~sDeG   98 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKS----FNESTILIKNVSLKDNG   98 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccC----CCcceEEEEeCChhhCe
Confidence            356789999999999963355677899999643321 01 11        122211111    12346889999999999


Q ss_pred             eeEEEEee
Q psy15128        276 QWKLIAKN  283 (292)
Q Consensus       276 ~y~C~a~n  283 (292)
                      .|.|...-
T Consensus        99 cY~C~F~t  106 (189)
T PHA02987         99 CYTCIFNT  106 (189)
T ss_pred             EEEEEEEe
Confidence            99998753

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.04  E-value=8.3e-06  Score=52.25  Aligned_cols=75  Identities=17%  Similarity=0.120  Sum_probs=43.5

Q ss_pred             EeCCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCce--EEec--CCCccccccccccccccccccccceeEEEEeec
Q psy15128        210 VASGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKR--VSIL--GDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       210 ~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~--~~~~--~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +..|+.++|.|.|...+|.. .++|++||+++.......  ....  +++.|...  ..|.+..-...+...|+|.+...
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~--s~L~v~~~~w~~~~~ytC~V~H~   90 (102)
T cd05768          13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLY--SKLTVSAEDWNAGDVFTCVVGHE   90 (102)
T ss_pred             hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEE--EEEEEcHHHhcCCCcEEEEeEeC
Confidence            34578899999995446644 789999999875321111  1111  12434322  23333332233456899999876


Q ss_pred             cc
Q psy15128        285 RN  286 (292)
Q Consensus       285 ~g  286 (292)
                      .-
T Consensus        91 ~l   92 (102)
T cd05768          91 AL   92 (102)
T ss_pred             CC
Confidence            54

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=98.02  E-value=0.00011  Score=46.13  Aligned_cols=64  Identities=8%  Similarity=0.106  Sum_probs=39.5

Q ss_pred             ecCCcEEEEEEEeeeCC--CeeEEEECCeEEeeccCCCcceeEEeeec------EEEEccCCCCCCeEEEEEEEeCCc
Q psy15128         49 GLNGIASFQCVAEGSPL--PSVFWTQEGSQVLMFPGNAYGHLHVTQEG------TLRIQGVQKEDAGFFVCSALSVAG  118 (292)
Q Consensus        49 ~~g~~~~l~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~g~Y~C~~~~~~~  118 (292)
                      ..|...+|.|.+.|+.+  ..+.|.++|..+.   +..........++      .|.+   .+.+...|+|.+.+...
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~---~~~~~~~~p~~d~tyq~~s~l~~---~~~~~~~ysC~V~H~~l   84 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP---KVEQSDLSFSKDWTFYLLKSTEF---TPTKGDEYACRVRHNSM   84 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC---CcEECcEEECCCCCEEEEEEEEE---CCCCCCeEEEEEEECCC
Confidence            34666799999999633  3789999998753   1111111112222      3333   35677789999988643

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.01  E-value=2.3e-05  Score=50.96  Aligned_cols=74  Identities=11%  Similarity=0.121  Sum_probs=43.4

Q ss_pred             EEeCCCceEEEeeCCCC-CCCCeEEEeEc--C---eE----eccCCCceEEecC---CCcccc-----cccccccccccc
Q psy15128        209 RVASGETALLECGPPKG-QPEPTLHWKKN--G---QF----IDLESSKRVSILG---DPWFDS-----RRSRSIFGSVLG  270 (292)
Q Consensus       209 ~~~~g~~~~l~C~~~~~-~p~~~~~W~~~--g---~~----~~~~~~~~~~~~~---~~~~~~-----~~~~~l~i~~~~  270 (292)
                      .+.+|++++|.|.+ .+ .....+.|++.  |   +.    +...........+   ...+..     .....|.|..+.
T Consensus         2 ~v~~G~~vtL~C~~-~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   80 (107)
T cd07700           2 LVQTNNTVKLSCEA-KGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK   80 (107)
T ss_pred             EEcCCCCEEEEEEE-ecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence            57899999999997 44 33458999983  2   11    1001111010000   111111     112358999999


Q ss_pred             ccccceeEEEEee
Q psy15128        271 ALSDDQWKLIAKN  283 (292)
Q Consensus       271 ~~~~g~y~C~a~n  283 (292)
                      .+|+|.|.|...+
T Consensus        81 ~~Dsg~YyCa~~~   93 (107)
T cd07700          81 PEDSGTYFCMTVG   93 (107)
T ss_pred             HHHCEEEEEeEcC
Confidence            9999999999863

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.01  E-value=1.1e-05  Score=50.91  Aligned_cols=76  Identities=12%  Similarity=0.081  Sum_probs=41.9

Q ss_pred             EEeCCCceEEEeeCCCC-CCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        209 RVASGETALLECGPPKG-QPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       209 ~~~~g~~~~l~C~~~~~-~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      .+..|+.++|.|.|... +|+. .++|+++|...............++.|...  ..|.+..-...+.-.|+|.+....-
T Consensus        10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~--s~l~v~~~~w~~g~~ysC~V~H~~l   87 (96)
T cd07696          10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVT--STLNVSTDDWISGDTFQCKVTHPDL   87 (96)
T ss_pred             HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEE--EEEEeCHHHccCCCcEEEEEECCCC
Confidence            45568999999999444 3544 889999874331111112223334433322  2232332222234489999987653

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.00  E-value=7.4e-06  Score=54.00  Aligned_cols=79  Identities=14%  Similarity=0.152  Sum_probs=48.4

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCe-----Eec-cCCCceEEecCC---Ccccc-----ccccccccccccc
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQ-----FID-LESSKRVSILGD---PWFDS-----RRSRSIFGSVLGA  271 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~-----~~~-~~~~~~~~~~~~---~~~~~-----~~~~~l~i~~~~~  271 (292)
                      ....+.+|+++.|.|..........+.|++...     .+. ............   +....     .....|.|..++.
T Consensus         9 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~   88 (114)
T PF07686_consen    9 SPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQP   88 (114)
T ss_dssp             SEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESG
T ss_pred             CeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCc
Confidence            467889999999999973134556899998322     111 001111111111   11111     1223699999999


Q ss_pred             cccceeEEEEeec
Q psy15128        272 LSDDQWKLIAKNI  284 (292)
Q Consensus       272 ~~~g~y~C~a~n~  284 (292)
                      .|+|.|.|.+...
T Consensus        89 ~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   89 SDSGTYFCQVSTS  101 (114)
T ss_dssp             GGEEEEEEEEEES
T ss_pred             CcCEEEEEEEEEC
Confidence            9999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.99  E-value=0.0013  Score=51.62  Aligned_cols=205  Identities=16%  Similarity=0.152  Sum_probs=104.5

Q ss_pred             cccCCcCCCeeEEEEEEecccccc-cccEEEEEe-CCCcEEeCCCccEEecCCcEEEEEEEeeeCCC---eeEEEECCeE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERE-TKPALLTVH-APPSFVVRPQDQKVGLNGIASFQCVAEGSPLP---SVFWTQEGSQ   76 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~-~~~~~l~v~-~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~v~W~~~~~~   76 (292)
                      |.++...|+|.|+-...+...... .+-+.+.+. .+|.+.+.+.  .+..|+...-.|.+..+.++   .+.|+++|..
T Consensus       211 I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~  288 (490)
T PHA03271        211 IRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWRQNGNI  288 (490)
T ss_pred             EEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCcc
Confidence            678888999977655555433322 221344443 4555655553  37789999999999875333   6899999876


Q ss_pred             EeeccCCCccee-------EEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceec
Q psy15128         77 VLMFPGNAYGHL-------HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLP  149 (292)
Q Consensus        77 ~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~  149 (292)
                      ..... ......       ..+.-+.|.+.+...+..-..+|.+.-..........-.+. ...+++|.+.+     ...
T Consensus       289 V~~~~-~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaat-P~VY~~P~ISv-----~Fe  361 (490)
T PHA03271        289 ATPRK-DRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAI-PTVYHHPRISL-----AFK  361 (490)
T ss_pred             ccCcc-ccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccC-CccccCCeEEE-----EEe
Confidence            63222 111111       11222345554443344447899987433322222111111 11123344332     233


Q ss_pred             CCCeEEEEeEeccCC-CCceEEEeCCeeCCCCCcc-----EEEcCCCcEEEEeeecCCCCCCcceEEe-CCCceEEEeeC
Q psy15128        150 LHSVAFLPCQAVGSP-PPHIRWYKNGNSLPPEDTR-----INVSSSGSLQIDVLRDDFRAEPKDTRVA-SGETALLECGP  222 (292)
Q Consensus       150 ~g~~v~l~C~~~~~p-~~~~~W~~~~~~l~~~~~~-----~~~~~~~~l~i~~~~~~d~g~~~~~~~~-~g~~~~l~C~~  222 (292)
                      .|+-   .|.+.--| ...+.|+-++...+.....     .-....+...|.+.          ..+. .++.+..+|.+
T Consensus       362 dG~A---VCtA~CVP~gV~lrWlVgD~p~pn~t~d~~itGvC~erPGlVNLrS~----------lPlSd~dgpveYTCrL  428 (490)
T PHA03271        362 DGYA---ICTIECVPSGITVRWLVHDEPQPNTTYDTVVTGLCRTIDRHRNLISR----------IPVQDNWQKTKYTCRL  428 (490)
T ss_pred             CCEE---EEeccccCCCcEEEEEecCCCCCCcccccccccccCCCCCceeeecc----------CCchhcCCceeEEEEE
Confidence            3433   45554333 4579999876654332110     00111222233321          1111 34678899998


Q ss_pred             CCCCCCC
Q psy15128        223 PKGQPEP  229 (292)
Q Consensus       223 ~~~~p~~  229 (292)
                       .|+|..
T Consensus       429 -~GYP~~  434 (490)
T PHA03271        429 -IGYPFD  434 (490)
T ss_pred             -eecCCC
Confidence             898855

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.99  E-value=2.2e-05  Score=49.43  Aligned_cols=74  Identities=15%  Similarity=0.082  Sum_probs=44.5

Q ss_pred             CceEEEeeCCCCCCCCeEEEeEcC----eEec-cC----------CCceEEecCCCccccccccccccccccccccceeE
Q psy15128        214 ETALLECGPPKGQPEPTLHWKKNG----QFID-LE----------SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWK  278 (292)
Q Consensus       214 ~~~~l~C~~~~~~p~~~~~W~~~g----~~~~-~~----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~  278 (292)
                      ++++|.|..........+.|.|-.    ..+. .+          =..|+.+...+    ....+|.|.++..+|+|.|.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~----~~d~sl~i~nv~~~D~G~Y~   76 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYS----LLDATIMLENVGFSDIGVYI   76 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCC----CCccEEEEeCCCccccEEEE
Confidence            468999996333334489998842    1221 00          01123332111    12347899999999999999


Q ss_pred             EEE-eecccccccC
Q psy15128        279 LIA-KNIRNQQQHG  291 (292)
Q Consensus       279 C~a-~n~~g~~~~~  291 (292)
                      |.+ +.+.|+.+.+
T Consensus        77 C~v~tfP~G~~~~~   90 (96)
T cd05887          77 CKAVTFPLGNTQSS   90 (96)
T ss_pred             EEEEeCCCCCeeEE
Confidence            996 5677766544

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.98  E-value=2.3e-05  Score=49.25  Aligned_cols=70  Identities=20%  Similarity=0.119  Sum_probs=43.7

Q ss_pred             CCCceEEEeeCCCCCCC-CeEEEeEcCeEeccCC-CceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        212 SGETALLECGPPKGQPE-PTLHWKKNGQFIDLES-SKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      .++..+|.|.|...+|. ..++|.+||+.+.... ...+....++.|...  ..|.+   .+.+...|+|.+....-
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~--s~L~v---~~~~~~~ytC~V~H~~l   85 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKF--SYLNF---TPEEGDIYSCIVEHWGL   85 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEE--EEEEE---ECCCCCeEEEEEEeCCC
Confidence            35668999999554664 4889999999875321 123344455554433  22322   33455699999987643

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.95  E-value=3.6e-05  Score=48.41  Aligned_cols=68  Identities=12%  Similarity=0.117  Sum_probs=40.3

Q ss_pred             CceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccc-eeEEEEeecccc
Q psy15128        214 ETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDD-QWKLIAKNIRNQ  287 (292)
Q Consensus       214 ~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~a~n~~g~  287 (292)
                      ..+.+.|.+..+.|.+.|+|+++...   ..........++.+.  ....|.+ ....+|.| .|+|.|.|..-+
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g---~~~~~~~~~~~gt~t--v~S~l~~-~P~~~d~Gk~ltC~v~h~al~   84 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGG---NANTTSKENGDGTVT--VTSEYSL-VPTPEANGKEVTCKVEHETLQ   84 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCC---CeeEEEEeCCCCCEE--EEEEEEE-ecCHHHCCCEEEEEEeCcccC
Confidence            45789999878999999999987211   111112222222222  1223334 34455555 899999998644

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.94  E-value=0.00027  Score=44.53  Aligned_cols=68  Identities=15%  Similarity=0.141  Sum_probs=41.1

Q ss_pred             ecCCcEEEEEEEeee-CCC-eeEEEECCeEEeeccCCC----cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         49 GLNGIASFQCVAEGS-PLP-SVFWTQEGSQVLMFPGNA----YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        49 ~~g~~~~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      ..|+.++|.|.+.|+ |.. .+.|++++..+.......    .....+...+.|.+.   ..+...|+|.+.+....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~---~~~~~~ysC~V~H~~l~   85 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETT---PSRGDTYTCVVEHSSLQ   85 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEeCCCC
Confidence            357889999999996 433 789999998753210000    011112223345443   34566899999886543

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.93  E-value=0.00011  Score=48.08  Aligned_cols=76  Identities=20%  Similarity=0.259  Sum_probs=47.5

Q ss_pred             cEEecCCcEEEEEEEeee-CC-CeeEEEECCeEEeeccC-----CCcceeEEeeecEEEEccCCCCC-CeEEEEEEEeCC
Q psy15128         46 QKVGLNGIASFQCVAEGS-PL-PSVFWTQEGSQVLMFPG-----NAYGHLHVTQEGTLRIQGVQKED-AGFFVCSALSVA  117 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d-~g~Y~C~~~~~~  117 (292)
                      ..+..++.++|.|.+.++ |. ..+.|++++..+.....     .......+...+.|.+......+ ...|+|.+.+..
T Consensus        13 ~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g   92 (115)
T cd05769          13 AEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYG   92 (115)
T ss_pred             HHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeC
Confidence            334456789999999996 44 37899999976532110     00000233445567777666544 568999998875


Q ss_pred             cCee
Q psy15128        118 GSTT  121 (292)
Q Consensus       118 ~~~~  121 (292)
                      ....
T Consensus        93 ~~~~   96 (115)
T cd05769          93 GTDT   96 (115)
T ss_pred             Cccc
Confidence            4433

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.93  E-value=0.00037  Score=43.84  Aligned_cols=66  Identities=17%  Similarity=0.230  Sum_probs=39.4

Q ss_pred             cCCcEEEEEEEeee-CC-CeeEEEECCeEEeeccC----CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128         50 LNGIASFQCVAEGS-PL-PSVFWTQEGSQVLMFPG----NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG  118 (292)
Q Consensus        50 ~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~  118 (292)
                      .++..+|.|.+.|+ |. ..++|.++|..+.....    .......+.....|.+..   .+...|+|.+.+...
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~l   85 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWGL   85 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCCC
Confidence            35668999999996 43 47899999986531100    001111122233565554   455689999987643

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.91  E-value=0.0002  Score=45.15  Aligned_cols=67  Identities=15%  Similarity=0.212  Sum_probs=40.8

Q ss_pred             cCCcEEEEEEEeee-CC-CeeEEEECCeEEeec----cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         50 LNGIASFQCVAEGS-PL-PSVFWTQEGSQVLMF----PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        50 ~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~----~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      .++.++|.|.+.|+ |. ..+.|++++.. ...    .........+.....|.+..........|+|++.+..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            46679999999996 43 37899999986 211    0000001122333456666554444667999998864

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.88  E-value=9e-05  Score=45.37  Aligned_cols=61  Identities=23%  Similarity=0.510  Sum_probs=37.8

Q ss_pred             cEEEEEEEeeeCC--CeeEEEECCe----EEeeccC---------CCcceeEEee-----ecEEEEccCCCCCCeEEEEE
Q psy15128         53 IASFQCVAEGSPL--PSVFWTQEGS----QVLMFPG---------NAYGHLHVTQ-----EGTLRIQGVQKEDAGFFVCS  112 (292)
Q Consensus        53 ~~~l~C~~~~~~~--~~v~W~~~~~----~~~~~~~---------~~~~~~~~~~-----~~~l~i~~~~~~d~g~Y~C~  112 (292)
                      ++.|.|.+.....  ..+.|++...    .......         ....+.....     ...|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            4789998876543  3789998541    1111110         1123333222     24799999999999999996


Q ss_pred             E
Q psy15128        113 A  113 (292)
Q Consensus       113 ~  113 (292)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            3

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.86  E-value=9e-05  Score=46.50  Aligned_cols=75  Identities=13%  Similarity=0.097  Sum_probs=47.5

Q ss_pred             cEEecCCcEEE-EEEE-eeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         46 QKVGLNGIASF-QCVA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        46 ~~~~~g~~~~l-~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      ..+.+|+.+.+ .|.+ .+.|++.|.|+.+....................+.|.+.....+|...++|.+.+.....
T Consensus        11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~~   87 (97)
T cd07704          11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQQ   87 (97)
T ss_pred             eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccCC
Confidence            34567788888 8866 457999999998643321111111111234445578887777778888999998875543

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.84  E-value=0.00013  Score=44.28  Aligned_cols=63  Identities=21%  Similarity=0.349  Sum_probs=43.3

Q ss_pred             ceEEeCCCceEEEeeCCCC-CCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128        207 DTRVASGETALLECGPPKG-QPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK  282 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~  282 (292)
                      ...+..|++++|+|....+ .|.+.++|.-.+...-       ....      .....|....+...|+|+++|+++
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~-------~~~~------~~~ktL~~~qv~~qdSG~WtC~V~   71 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK-------QILN------QDKKTLNLVQLGPNDSGTWDCIVS   71 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc-------eecc------CCccEEEeceeCcccCCEEEEEEE
Confidence            3467889999999997333 3455999987543221       0000      122357788899999999999996

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.83  E-value=0.00011  Score=48.82  Aligned_cols=79  Identities=15%  Similarity=0.125  Sum_probs=46.4

Q ss_pred             CcceEEeCCCceEEEeeCCCCCC------CCeEEEeEcC--e----EeccCCCc-eEEecCCCccc-----ccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQP------EPTLHWKKNG--Q----FIDLESSK-RVSILGDPWFD-----SRRSRSIFG  266 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p------~~~~~W~~~g--~----~~~~~~~~-~~~~~~~~~~~-----~~~~~~l~i  266 (292)
                      |..+.+.+|+.|+|.|.. ....      ...+.|++..  .    .+...... .......+.+.     ......|.|
T Consensus         6 P~~v~~~~G~~VtL~C~f-~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I   84 (119)
T cd05712           6 PKSVSVQEGLCVLIPCSF-SYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI   84 (119)
T ss_pred             CCEEEEeccccEEEEEEe-eCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence            456789999999999974 2211      2468999842  1    11100100 00000011111     122346999


Q ss_pred             ccccccccceeEEEEeec
Q psy15128        267 SVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       267 ~~~~~~~~g~y~C~a~n~  284 (292)
                      ..++..|+|.|.|.+...
T Consensus        85 ~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          85 SDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             ccCChhhCeEEEEEEEcC
Confidence            999999999999988653

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.83  E-value=7.8e-05  Score=49.29  Aligned_cols=78  Identities=13%  Similarity=0.150  Sum_probs=45.8

Q ss_pred             CcceEEeCCCceEEEeeCCCCCC--CCeEEEeEc--C-eE--e-ccCC-CceEEe--cCCCcccc-----cccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQP--EPTLHWKKN--G-QF--I-DLES-SKRVSI--LGDPWFDS-----RRSRSIFGSV  268 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--g-~~--~-~~~~-~~~~~~--~~~~~~~~-----~~~~~l~i~~  268 (292)
                      +....+.+|+.++|.|.. ....  ...+.|++-  | .+  | .... ......  ...+.+..     .....|.|..
T Consensus         4 ~~~~~v~~G~~vtL~C~~-~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKA-SGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS   82 (117)
T ss_pred             CCCeEEcCCCCEEEEEEE-eCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence            346688999999999986 3322  456999983  2 22  1 0000 001000  00111211     1123589999


Q ss_pred             ccccccceeEEEEee
Q psy15128        269 LGALSDDQWKLIAKN  283 (292)
Q Consensus       269 ~~~~~~g~y~C~a~n  283 (292)
                      +..+|+|.|.|.+..
T Consensus        83 ~~~~Dsa~YyCa~~~   97 (117)
T cd04981          83 LTPEDTAVYYCARGL   97 (117)
T ss_pred             CCHHHCEEEEEEEEc
Confidence            999999999999865

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>KOG1480|consensus

Probab=97.83  E-value=3.1e-05  Score=65.03  Aligned_cols=144  Identities=19%  Similarity=0.274  Sum_probs=91.2

Q ss_pred             CCeEEeCCCCceecCCCeEEEEeEeccCCCCc----eEEEeCCee--CCCCCc---cE------EEc--C------CCcE
Q psy15128        136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH----IRWYKNGNS--LPPEDT---RI------NVS--S------SGSL  192 (292)
Q Consensus       136 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~----~~W~~~~~~--l~~~~~---~~------~~~--~------~~~l  192 (292)
                      .+.+...|....+..+..+.|.|.+...+...    -.|..+..-  +...+.   ..      .+.  .      ..-+
T Consensus        24 l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d~  103 (909)
T KOG1480|consen   24 LPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPEDY  103 (909)
T ss_pred             cceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccce
Confidence            44566677788888999999999986654433    246543221  111110   00      000  0      0012


Q ss_pred             EEEeeecCCCC--------------------CCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecC
Q psy15128        193 QIDVLRDDFRA--------------------EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILG  252 (292)
Q Consensus       193 ~i~~~~~~d~g--------------------~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~  252 (292)
                      ...-+..++.|                    .|....|..+..+.+.|....+.|...+.|++++..+..  ..++....
T Consensus       104 ~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p--d~n~~~~~  181 (909)
T KOG1480|consen  104 WCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP--DANVIRAS  181 (909)
T ss_pred             eeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCc--cccchhhh
Confidence            22223333333                    455667888889999999777889999999999987753  33333322


Q ss_pred             CCccccccccccccccccccccceeEEEEeecccccc
Q psy15128        253 DPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       253 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  289 (292)
                              ...+.+..+...|.|+|+|+|.|..+...
T Consensus       182 --------d~~li~~~arlsd~~nytc~a~ni~~~r~  210 (909)
T KOG1480|consen  182 --------DHNLIISQARLSDSGNYTCEATNIVAKRK  210 (909)
T ss_pred             --------cCCccccchhhhhcccceeeeehhhcccc
Confidence                    23588999999999999999999988754

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.81  E-value=0.00014  Score=45.85  Aligned_cols=72  Identities=19%  Similarity=0.169  Sum_probs=42.9

Q ss_pred             CceEEEeeCCCCCCCCeEEEeEcCe----Eecc-CC--C--------ceEEecCCCccccccccccccccccccccceeE
Q psy15128        214 ETALLECGPPKGQPEPTLHWKKNGQ----FIDL-ES--S--------KRVSILGDPWFDSRRSRSIFGSVLGALSDDQWK  278 (292)
Q Consensus       214 ~~~~l~C~~~~~~p~~~~~W~~~g~----~~~~-~~--~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~  278 (292)
                      +.++|.|..........+.|.|-..    .+.. +.  +        .|+.+....    ....+|.|.++..+|+|.|.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~----~~d~sI~i~nvt~~D~G~Y~   76 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNST----REDMSLSFNNATEEDVGLYC   76 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCC----CCccEEEEcCCCcccCEEEE
Confidence            4689999964334455889998421    1110 00  1        122222111    12357889999999999999


Q ss_pred             EEEeec-ccccc
Q psy15128        279 LIAKNI-RNQQQ  289 (292)
Q Consensus       279 C~a~n~-~g~~~  289 (292)
                      |....- .|..+
T Consensus        77 C~~~t~P~g~~~   88 (96)
T cd05889          77 CSLVTYPQGSWE   88 (96)
T ss_pred             EEEEeCCCCCeE
Confidence            999653 55443

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.80  E-value=0.00024  Score=43.77  Aligned_cols=68  Identities=16%  Similarity=0.300  Sum_probs=42.1

Q ss_pred             cCCcEEEEEEEeee-CCC-eeEEEECCeEEeeccCCC----cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         50 LNGIASFQCVAEGS-PLP-SVFWTQEGSQVLMFPGNA----YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        50 ~g~~~~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      .++.++|.|.+.++ |.. .|.|++++..+.......    .....+...+.|.+.   ..+...|+|.+.+.....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~~   80 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLPE   80 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSSS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCCC
Confidence            37889999999986 433 799999988653110000    011122223355555   566668999999876543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.80  E-value=5e-05  Score=47.84  Aligned_cols=69  Identities=14%  Similarity=0.120  Sum_probs=39.3

Q ss_pred             CCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccc-eeEEEEeecc
Q psy15128        212 SGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDD-QWKLIAKNIR  285 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~a~n~~  285 (292)
                      .+..++|.|.|...+|.. .++|.+||+.+............+..|...  ..|.+   .+.+.| .|+|.++...
T Consensus        15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~--S~L~v---t~~~~~~~ysC~V~H~g   85 (96)
T cd07697          15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTT--SWLTV---TKDSLGKKFRCIYKHEG   85 (96)
T ss_pred             cCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEE--EEEEE---CchhCCCeEEEEEEECC
Confidence            466789999995546644 889999999875322111122222233322  22322   233234 6999998743

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.79  E-value=0.00015  Score=45.79  Aligned_cols=73  Identities=16%  Similarity=0.198  Sum_probs=44.7

Q ss_pred             cEEecCCcEEEEEEEeeeC---CCeeEEEECCeEEee-ccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128         46 QKVGLNGIASFQCVAEGSP---LPSVFWTQEGSQVLM-FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG  118 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~---~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~  118 (292)
                      ..+..+..++|.|.+.++.   ...|.|.+++..-.. ..........+...+.|.+..-.......|+|.+.+...
T Consensus        14 e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l   90 (99)
T cd04986          14 EDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG   90 (99)
T ss_pred             HHhCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence            3454678899999999854   237999998764111 111111122333445677665555556679999987654

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.77  E-value=5.6e-05  Score=48.81  Aligned_cols=74  Identities=11%  Similarity=0.102  Sum_probs=44.0

Q ss_pred             EEeCCCceEEEeeCCCCCCCCeEEEeEcC----eE---ec-cCCCceEEecC----CCcccc---ccccccccccccccc
Q psy15128        209 RVASGETALLECGPPKGQPEPTLHWKKNG----QF---ID-LESSKRVSILG----DPWFDS---RRSRSIFGSVLGALS  273 (292)
Q Consensus       209 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~g----~~---~~-~~~~~~~~~~~----~~~~~~---~~~~~l~i~~~~~~~  273 (292)
                      .+.+|++|+|.|.+ .......+.|++..    ..   |. ...........    ...+..   .....|.|..++.+|
T Consensus         2 ~v~~G~~vtL~C~~-~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sD   80 (104)
T cd05720           2 DAELGQKVELKCEV-LNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKEN   80 (104)
T ss_pred             cccCCCeEEEEEEe-cCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHH
Confidence            36789999999997 44444579999832    11   11 11100100000    111111   233469999999999


Q ss_pred             cceeEEEEee
Q psy15128        274 DDQWKLIAKN  283 (292)
Q Consensus       274 ~g~y~C~a~n  283 (292)
                      +|+|.|.+.+
T Consensus        81 sgtY~Ca~~~   90 (104)
T cd05720          81 EGYYFCSVAS   90 (104)
T ss_pred             CEEEEEEEcc
Confidence            9999999864

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.77  E-value=0.0007  Score=42.70  Aligned_cols=68  Identities=15%  Similarity=0.207  Sum_probs=40.5

Q ss_pred             EEecCCcEEEEEEEeee-CC-CeeEEEECCeEEeecc----CCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         47 KVGLNGIASFQCVAEGS-PL-PSVFWTQEGSQVLMFP----GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        47 ~~~~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      .+..+..++|.|.+.++ |. ..+.|.++|..+....    ...... .+...+.|.+..-.  ....|+|.+.+..
T Consensus        12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~d-ty~~~S~L~vt~~~--~~~~ysC~V~H~g   85 (96)
T cd07697          12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDND-VYSTTSWLTVTKDS--LGKKFRCIYKHEG   85 (96)
T ss_pred             HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCC-EEEEEEEEEECchh--CCCeEEEEEEECC
Confidence            34446778999999996 43 3689999987642110    000111 33334456665443  2345999998753

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>TIGR00864 PCC polycystin cation channel protein

Probab=97.75  E-value=0.042  Score=54.25  Aligned_cols=215  Identities=12%  Similarity=0.190  Sum_probs=119.8

Q ss_pred             CCcCCCeeEEEEE--EecccccccccEEEEEeCC-CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeecc
Q psy15128          5 VKKSDEGKYQCYV--QNMVGERETKPALLTVHAP-PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFP   81 (292)
Q Consensus         5 v~~~D~G~Y~C~~--~~~~~~~~~~~~~l~v~~~-p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~   81 (292)
                      +...+.|.|.-.+  .|..|..... ..+.|..+ ..+.+......+..|+.+.|.-.........+.|..++......+
T Consensus      1664 vt~~~pG~Y~VtL~aSN~vG~~t~s-~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s 1742 (2740)
T TIGR00864      1664 LNPLEAGPCDIFLQAANLLGQATAD-CTIDFLEPAGNLMLQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETS 1742 (2740)
T ss_pred             EecCCCceEEEEEEEeecccceeeE-EEEEEEEEcCceEEeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccC
Confidence            3456778776544  4666665544 44455443 334445455567778999988766666667899987654211000


Q ss_pred             CCCcceeEEeeecEEEEccCCCCCCeEEEEE--EEeCCcCeeEEEEEEEEeecCCCCCeEEeCCC-Cc-eecCCCeEEEE
Q psy15128         82 GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS--ALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPS-NQ-TLPLHSVAFLP  157 (292)
Q Consensus        82 ~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~--~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~-~~-~~~~g~~v~l~  157 (292)
                      ...   .      .     -+-...|.|...  +.|..+....+..+.|..  ......+..... .. .+..|..+.|.
T Consensus      1743 ~p~---~------t-----Htf~~~G~y~VtVta~N~vss~~~s~~V~Vqe--pV~GL~i~~~~~~~~~~~~ag~~v~F~ 1806 (2740)
T TIGR00864      1743 EPF---M------S-----HSFPSAGLHLVTMKAFNELGSANASEEVDVQE--PISGLKIRAADAGEQNFFAADSSVCFQ 1806 (2740)
T ss_pred             CCc---e------E-----EEccCCceEEEEEEEEccccccceeEEEEEEe--ccccceEecCCCCcccceecCcEEEEE
Confidence            000   0      0     012456788655  557777666655555543  222233322211 11 45568888887


Q ss_pred             eEeccCCCCceEEEeCCeeCCCC-CccEEEcCCCcEEEEeeecCCCC-------------------CCcceEEeCCCceE
Q psy15128        158 CQAVGSPPPHIRWYKNGNSLPPE-DTRINVSSSGSLQIDVLRDDFRA-------------------EPKDTRVASGETAL  217 (292)
Q Consensus       158 C~~~~~p~~~~~W~~~~~~l~~~-~~~~~~~~~~~l~i~~~~~~d~g-------------------~~~~~~~~~g~~~~  217 (292)
                      -.+....+..+.|.+++..-... ...+.....|.+.|.-...++-+                   ......+..|+.++
T Consensus      1807 a~vstGsnVsw~W~f~~g~s~~gk~v~~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~ 1886 (2740)
T TIGR00864      1807 GELATGTNVSWCWAIDGGSSKMGKHACMTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVE 1886 (2740)
T ss_pred             EEccCCCeeEEEEEeCCCCccccceeEEecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCCCEEE
Confidence            77543335578888875532222 12244445566655533333333                   11233456899999


Q ss_pred             EEeeCCCCCCCCeEEEeEcC
Q psy15128        218 LECGPPKGQPEPTLHWKKNG  237 (292)
Q Consensus       218 l~C~~~~~~p~~~~~W~~~g  237 (292)
                      |++.+ ...+...+.|.+++
T Consensus      1887 fsa~l-~~GS~Vtf~w~fGd 1905 (2740)
T TIGR00864      1887 FQILL-AAGSAVNFRLQIGG 1905 (2740)
T ss_pred             EEEEe-cCCCceEEEEEeCC
Confidence            99987 55557899999864

Note: this model has been restricted to the amino half because for technical reasons.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.70  E-value=8.5e-05  Score=42.23  Aligned_cols=52  Identities=27%  Similarity=0.347  Sum_probs=33.9

Q ss_pred             eCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        211 ASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       211 ~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      ..|..|+|+|.. .+   ..+.|.++++.+.. ++...                ...... +++|.|.|.+.+.
T Consensus         5 isGTtVtlTCP~-~~---~~i~W~~n~~~~~g-~~~~~----------------~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           5 ISGTTVTVTCPL-SG---DDIKWKKNDQVSQG-SDEKY----------------LSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EeccEEEEECCC-CC---CCceEEeCCccCCC-CCceE----------------EeeccC-CCCceEEEEeCCC
Confidence            468999999985 32   23999999866532 11111                122223 6899999999754

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.65  E-value=0.0001  Score=46.52  Aligned_cols=75  Identities=13%  Similarity=0.184  Sum_probs=43.2

Q ss_pred             EeCCCceEEEeeCCCCC-CC-CeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccc
Q psy15128        210 VASGETALLECGPPKGQ-PE-PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQ  287 (292)
Q Consensus       210 ~~~g~~~~l~C~~~~~~-p~-~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~  287 (292)
                      ...+..++|.|.+.+.+ |. ..+.|.++|.. . ..........++.|...  ..|.+..-.......|+|.+.+....
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~-~~~t~~~~~~dgTys~~--S~L~v~~~~W~~g~~ytC~V~H~~l~   91 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-E-AVQTSAESDQCGCYSVS--SVLPGCAEEWNKGEPFACTVTHPEGD   91 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-C-cEEcCcccCCCCCEEEE--EEEEeCHHHhcCCCeEEEEEECCCcc
Confidence            34678899999995545 53 48999999875 1 11112222334433322  23333322233344799999987664


Q ss_pred             c
Q psy15128        288 Q  288 (292)
Q Consensus       288 ~  288 (292)
                      .
T Consensus        92 ~   92 (99)
T cd04986          92 Q   92 (99)
T ss_pred             c
Confidence            3

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02633 hypothetical protein; Provisional

Probab=97.64  E-value=0.00019  Score=39.96  Aligned_cols=39  Identities=15%  Similarity=0.232  Sum_probs=32.5

Q ss_pred             eecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEe
Q psy15128         92 QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS  130 (292)
Q Consensus        92 ~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~  130 (292)
                      ....|.|.++..+|+|.|.|.++|.......+..+.|..
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~   54 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL   54 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence            345799999999999999999998877777777777753

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.61  E-value=0.0003  Score=44.16  Aligned_cols=74  Identities=11%  Similarity=0.128  Sum_probs=46.0

Q ss_pred             ceEEeCCCceEE-EeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccc-eeEEEEeec
Q psy15128        207 DTRVASGETALL-ECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDD-QWKLIAKNI  284 (292)
Q Consensus       207 ~~~~~~g~~~~l-~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~a~n~  284 (292)
                      ...+.+|+.+.+ .|.+..+.|++.|.|+.+..-.   .........++.+.  ....+.+. ....|.| .++|.+.+.
T Consensus        10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~---~~~~~~~~~ngT~T--V~S~~~l~-p~r~d~G~~vtC~V~H~   83 (97)
T cd07704          10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGT---SESHSQEHPNGTTT--VTSEYIWV-PSRHANGHPLTCVVSHP   83 (97)
T ss_pred             eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCc---cceeeecCCCCCEE--EEEEEEEE-eCHHHCCcEEEEEEeCc
Confidence            456678899999 9999889999999999863221   11122222333322  22234443 3444555 999999887


Q ss_pred             cc
Q psy15128        285 RN  286 (292)
Q Consensus       285 ~g  286 (292)
                      .=
T Consensus        84 al   85 (97)
T cd07704          84 AL   85 (97)
T ss_pred             cc
Confidence            43

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.61  E-value=0.00017  Score=45.51  Aligned_cols=71  Identities=11%  Similarity=0.166  Sum_probs=40.2

Q ss_pred             CCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCC-CceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        212 SGETALLECGPPKGQPEP-TLHWKKNGQFIDLES-SKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      .++.++|.|.|...+|.. .++|++||+. .... ........++.|...  ..|.+..-.......|+|.++...
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~--s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTAS--SQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEE--EEEEEeHHHcCCCCcEEEEEEeCC
Confidence            456799999995445644 8899999997 3221 111222224444322  123333222222558999999865

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.60  E-value=0.00018  Score=46.70  Aligned_cols=25  Identities=12%  Similarity=-0.102  Sum_probs=21.7

Q ss_pred             ccccccccccccccceeEEEEeecc
Q psy15128        261 SRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       261 ~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      ...|.|.+++.+|+|.|.|.+....
T Consensus        71 ~asL~i~nv~~~D~G~Y~C~v~~g~   95 (110)
T cd05902          71 NASLVLSRLRYSDSGTYRCEVVLGI   95 (110)
T ss_pred             eEEEEECCCCHHHCEEEEEEEEECC
Confidence            3578999999999999999998744

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>TIGR00864 PCC polycystin cation channel protein

Probab=97.50  E-value=0.13  Score=51.19  Aligned_cols=217  Identities=12%  Similarity=0.134  Sum_probs=120.9

Q ss_pred             CCcCCCeeEEEEEE--ecccccccccEEEEEeCCC-cEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeec-
Q psy15128          5 VKKSDEGKYQCYVQ--NMVGERETKPALLTVHAPP-SFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMF-   80 (292)
Q Consensus         5 v~~~D~G~Y~C~~~--~~~~~~~~~~~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~-   80 (292)
                      .+..+.|.|.-.+.  |..+..... -.+.|+.+. .+.+......+..|+.++|.+.+...+...+.|..++..-... 
T Consensus      1834 ~Tf~~aG~ytV~L~AsN~vs~~~~s-~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t 1912 (2740)
T TIGR00864      1834 MTFPDAGTFAIRLNASNAVSGKSAS-REFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQ 1912 (2740)
T ss_pred             EecCCCeEEEEEEEEEcccCcceee-eeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeec
Confidence            45678999976554  555554444 667777665 3445556667888999999998877677788898765432111 


Q ss_pred             cCCCcceeEEeeecEEEEccCCCCCCeEEEE--EEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCC-CceecCCCeEEEE
Q psy15128         81 PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC--SALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPS-NQTLPLHSVAFLP  157 (292)
Q Consensus        81 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~-~~~~~~g~~v~l~  157 (292)
                      ++..             +. =.-..-|.|..  .+.|..+.......+.|..  ..  .-+.+... ...+..|+..++.
T Consensus      1913 ~~~t-------------~~-HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle--~V--~gL~I~~~c~~~~~~g~~~tF~ 1974 (2740)
T TIGR00864      1913 PGPR-------------FS-HSFPRVDDHMVNLRAKNEVSCAQANLHIEVLE--AV--RGLQIPDCCAAGIATGEEKNFT 1974 (2740)
T ss_pred             CCCe-------------EE-eecCCCCcEEEEEEEEeccceeeeeEEEEEEE--ec--cceEecCCcccceecCceEEEE
Confidence            1110             00 01123455654  4557666655555554432  21  12222222 1125789999999


Q ss_pred             eEeccCCCCceEEEeCCeeCCC-------C-CccEEEcCCCcEEEEeeecCCCCCC-------------------cceEE
Q psy15128        158 CQAVGSPPPHIRWYKNGNSLPP-------E-DTRINVSSSGSLQIDVLRDDFRAEP-------------------KDTRV  210 (292)
Q Consensus       158 C~~~~~p~~~~~W~~~~~~l~~-------~-~~~~~~~~~~~l~i~~~~~~d~g~~-------------------~~~~~  210 (292)
                      -.+....+..+.|++.-..+..       + ...+.....|.|.|.-...++-|..                   .....
T Consensus      1975 A~v~~g~~V~f~W~f~~~~~~g~~~~~~~G~~vty~~~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i~~~~L~~~p~~~ 2054 (2740)
T TIGR00864      1975 ANVQRGKPVAFAWTFDLHHLHGDSLVIHMGKDVSYTAEAAGLLEIQLGAFNALGAENITLQLEAQDALMDAALQAGPQDC 2054 (2740)
T ss_pred             EEEecCCceEEEEEeeecccCCCcceeecCCceEEccCCCcEEEEEEEEEcccCcccccEEEEEEeheeeEEEeecCcce
Confidence            9885555667999865222111       1 1222233445555543332222200                   12234


Q ss_pred             eCCCceEEEeeCCCCCCCCeEEEeEc-CeEe
Q psy15128        211 ASGETALLECGPPKGQPEPTLHWKKN-GQFI  240 (292)
Q Consensus       211 ~~g~~~~l~C~~~~~~p~~~~~W~~~-g~~~  240 (292)
                      ..+..+.|+|.+..+.....+.|.++ |...
T Consensus      2055 ~~n~~v~f~~~~~~~~~~v~~~WDFGDGt~~ 2085 (2740)
T TIGR00864      2055 FTNKMAQFEAATSPKPNFMACHWDFGDGSAG 2085 (2740)
T ss_pred             ecCceEEEEEEEccCCCcEEEEEEecCCCCc
Confidence            45888999999733333468999996 4443

Note: this model has been restricted to the amino half because for technical reasons.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.48  E-value=0.00048  Score=43.02  Aligned_cols=74  Identities=12%  Similarity=-0.021  Sum_probs=43.2

Q ss_pred             EEeCCCceEEEeeCCCCCCC--CeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccc-eeEEEEeecc
Q psy15128        209 RVASGETALLECGPPKGQPE--PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDD-QWKLIAKNIR  285 (292)
Q Consensus       209 ~~~~g~~~~l~C~~~~~~p~--~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~a~n~~  285 (292)
                      .+.+|..++|.|.|....|.  ..+.|+++...+...   ...-..+..-.......+.+.. ..+|.| .|.|.|.=..
T Consensus        11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~---~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l   86 (99)
T cd07689          11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSK---SFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHI   86 (99)
T ss_pred             cccCCceEEEEEEecCcccCCceEEEEecCcceeccc---ccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEee
Confidence            34789999999999767776  589999877666311   1110000000001112233333 477777 9999998444


Q ss_pred             c
Q psy15128        286 N  286 (292)
Q Consensus       286 g  286 (292)
                      +
T Consensus        87 ~   87 (99)
T cd07689          87 D   87 (99)
T ss_pred             c
Confidence            3

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PHA02633 hypothetical protein; Provisional

Probab=97.38  E-value=0.00027  Score=39.42  Aligned_cols=34  Identities=26%  Similarity=0.289  Sum_probs=27.1

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCC
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAP   36 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~   36 (292)
                      |-++..+|+|.|.|.++|..-....+ +.|.|...
T Consensus        22 ilpa~~sDSGiYiC~~rn~t~c~~~s-i~l~V~~~   55 (63)
T PHA02633         22 ILNPTQSDSGIYMCITKNETYSDMMK-FDLCICLR   55 (63)
T ss_pred             EeccccccCcEEEEEEcCCCeeEEEE-EEEEEeec
Confidence            56788999999999999877666656 77777654

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.35  E-value=0.0009  Score=43.69  Aligned_cols=28  Identities=14%  Similarity=-0.031  Sum_probs=23.8

Q ss_pred             cccccccccccccceeEEEEeecccccc
Q psy15128        262 RSIFGSVLGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       262 ~~l~i~~~~~~~~g~y~C~a~n~~g~~~  289 (292)
                      .+|.|..++..|+|.|.|.+.+.....+
T Consensus        79 asL~i~~v~~sD~G~Y~C~V~~g~~~~~  106 (117)
T cd05901          79 ASLTIVKLRASDAGVYRCEVMHGIEDTQ  106 (117)
T ss_pred             eEEEEcccccccCEEEEEEEEECCcccE
Confidence            5788999999999999999988765543

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.32  E-value=0.00088  Score=38.45  Aligned_cols=49  Identities=18%  Similarity=0.506  Sum_probs=36.0

Q ss_pred             CCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      .+.|.|.|..    ..+|.|++ |..+.          ... ...|.+.....+-.|.|.|.+.+
T Consensus         6 ~~~V~L~C~~----~tsi~W~k-G~~~~----------~~~-~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNG----ATNITWKK-GKEIL----------EVS-NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecC----CCcEEEec-Ccccc----------ccc-ccEEeccCcccCCCcceEecCcc
Confidence            4579999965    24699999 54432          011 45788888999999999998865

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.32  E-value=0.00041  Score=39.50  Aligned_cols=51  Identities=14%  Similarity=0.325  Sum_probs=33.9

Q ss_pred             ecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         49 GLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        49 ~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      ..|.+|+|+|....   ..+.|++++..+.   +         .+..+.+.+-. ++.|.|.|.+.+
T Consensus         5 isGTtVtlTCP~~~---~~i~W~~n~~~~~---g---------~~~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           5 ISGTTVTVTCPLSG---DDIKWKKNDQVSQ---G---------SDEKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             EeccEEEEECCCCC---CCceEEeCCccCC---C---------CCceEEeeccC-CCCceEEEEeCC
Confidence            46889999997642   2399999985431   1         12233444444 889999999853

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.31  E-value=0.0028  Score=40.97  Aligned_cols=71  Identities=10%  Similarity=0.129  Sum_probs=44.2

Q ss_pred             CCccEEecCCcEEEEEEEeeeC--C-CeeEEEECCeEE-e---e------ccCCCcceeEEee-----ecEEEEccCCCC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSP--L-PSVFWTQEGSQV-L---M------FPGNAYGHLHVTQ-----EGTLRIQGVQKE  104 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~--~-~~v~W~~~~~~~-~---~------~~~~~~~~~~~~~-----~~~l~i~~~~~~  104 (292)
                      +....+..|+.++|.|.+.+..  . ..+.|+|..... .   .      .......+.....     .-.|.|.+++.+
T Consensus         5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~   84 (115)
T cd05721           5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRAN   84 (115)
T ss_pred             cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHH
Confidence            3455677889999999997753  2 468898853211 0   0      0001112221111     126999999999


Q ss_pred             CCeEEEEEE
Q psy15128        105 DAGFFVCSA  113 (292)
Q Consensus       105 d~g~Y~C~~  113 (292)
                      |++.|.|..
T Consensus        85 DTa~Y~Ca~   93 (115)
T cd05721          85 QTDIYFCKI   93 (115)
T ss_pred             HCeEEEEEe
Confidence            999999976

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>smart00406 IGv Immunoglobulin V-Type

Probab=97.25  E-value=0.0008  Score=41.05  Aligned_cols=20  Identities=15%  Similarity=-0.047  Sum_probs=17.6

Q ss_pred             cccccccccccccceeEEEE
Q psy15128        262 RSIFGSVLGALSDDQWKLIA  281 (292)
Q Consensus       262 ~~l~i~~~~~~~~g~y~C~a  281 (292)
                      ..|.|..++.+|+|.|.|.+
T Consensus        62 ~~L~i~~~~~~D~G~Y~C~v   81 (81)
T smart00406       62 VSLTISNLRVEDTGTYYCAV   81 (81)
T ss_pred             EEEEEcCCCHHHCEEEEEcC
Confidence            46889999999999999963

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=97.21  E-value=0.00055  Score=45.20  Aligned_cols=80  Identities=13%  Similarity=0.260  Sum_probs=45.7

Q ss_pred             EecCCcEEEEEEEeee-----CCCeeEEEECCeEEeeccCCCccee-----------EEeeecEEEEccCCCCCCeEEEE
Q psy15128         48 VGLNGIASFQCVAEGS-----PLPSVFWTQEGSQVLMFPGNAYGHL-----------HVTQEGTLRIQGVQKEDAGFFVC  111 (292)
Q Consensus        48 ~~~g~~~~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~i~~~~~~d~g~Y~C  111 (292)
                      ..-++++.|.|.+...     +...|.|.+++..+....+......           ...++.+|.+.....- .|+|+|
T Consensus        24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC  102 (130)
T PF08204_consen   24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC  102 (130)
T ss_dssp             -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred             EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence            3457899999998642     2336899999988765554432221           1122335777765444 899999


Q ss_pred             EEEeCCcCeeEEEEEEE
Q psy15128        112 SALSVAGSTTVRAFLQV  128 (292)
Q Consensus       112 ~~~~~~~~~~~~~~l~v  128 (292)
                      .+..........+.|..
T Consensus       103 eVt~~~~ege~~i~Lk~  119 (130)
T PF08204_consen  103 EVTELSREGETTIELKY  119 (130)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEecCCCceEEEEEEE
Confidence            99876665555555554

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.19  E-value=0.0025  Score=39.88  Aligned_cols=68  Identities=9%  Similarity=0.008  Sum_probs=39.0

Q ss_pred             EecCCcEEEEEEEee-eCC--CeeEEEECCeEEeeccCCCc--ceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         48 VGLNGIASFQCVAEG-SPL--PSVFWTQEGSQVLMFPGNAY--GHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        48 ~~~g~~~~l~C~~~~-~~~--~~v~W~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      +.+|..+++.|.+.+ .|.  ..+.|+++...+........  ..........+.+.....+|...|+|+|.-
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L   84 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKL   84 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEE
Confidence            578999999999976 344  47899987655432111000  000011123566665444444489999863

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PHA03271 envelope glycoprotein C; Provisional

Probab=96.87  E-value=0.16  Score=40.47  Aligned_cols=82  Identities=18%  Similarity=0.276  Sum_probs=50.5

Q ss_pred             EEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC--ceEEE
Q psy15128         95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP--HIRWY  171 (292)
Q Consensus        95 ~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~--~~~W~  171 (292)
                      .|.|.++...++|.|.-..++.....-....+.+...  ..+|.+.+.+.  .+..|+...-.|.+..+ |+-  .+.|+
T Consensus       208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~--~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf  283 (490)
T PHA03271        208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVC--QRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWR  283 (490)
T ss_pred             eEEEEEeecccceEEEEEecCCCCCccccceEEEEEE--ecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEE
Confidence            5889999999999664444433222222222222211  23444544333  36789999999999666 432  59999


Q ss_pred             eCCeeCCCC
Q psy15128        172 KNGNSLPPE  180 (292)
Q Consensus       172 ~~~~~l~~~  180 (292)
                      .||.+....
T Consensus       284 ~nG~~V~~~  292 (490)
T PHA03271        284 QNGNIATPR  292 (490)
T ss_pred             eCCccccCc
Confidence            999887553

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=96.81  E-value=0.0031  Score=36.26  Aligned_cols=50  Identities=18%  Similarity=0.177  Sum_probs=33.1

Q ss_pred             CCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128        212 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN  283 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n  283 (292)
                      ..++|.|+|.+ .    ..|.|++ |..+...+..                .+.+-.....-.|.|.|.++|
T Consensus         5 ~~~~V~L~C~~-~----tsi~W~k-G~~~~~~~~~----------------tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           5 SEGKVFLKCNG-A----TNITWKK-GKEILEVSNT----------------LLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             cCceEEEEecC-C----CcEEEec-Cccccccccc----------------EEeccCcccCCCcceEecCcc
Confidence            34579999975 2    4699999 5555321111                344445556679999999987

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA02982 hypothetical protein; Provisional

Probab=96.81  E-value=0.077  Score=38.00  Aligned_cols=123  Identities=15%  Similarity=0.287  Sum_probs=70.4

Q ss_pred             CccEEecCCcEEEEEEEee-eCCCeeEEEECCeEEeec--------------cCCCcceeEE---eeecEEEEccCCCCC
Q psy15128         44 QDQKVGLNGIASFQCVAEG-SPLPSVFWTQEGSQVLMF--------------PGNAYGHLHV---TQEGTLRIQGVQKED  105 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~--------------~~~~~~~~~~---~~~~~l~i~~~~~~d  105 (292)
                      ..+....++.+.|.|.... ..-.+..|+++.......              ++........   ...++|+|.++..+.
T Consensus        32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N  111 (251)
T PHA02982         32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN  111 (251)
T ss_pred             hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence            4455667999999998643 234478898865332210              0111111111   123589999999999


Q ss_pred             CeEEEEEEEeCCcCee-EEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCee
Q psy15128        106 AGFFVCSALSVAGSTT-VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNS  176 (292)
Q Consensus       106 ~g~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~  176 (292)
                      .|.|+|.+....+... ....+.|+..    ...+..      ..-...-.+.|-+.....+-..|..+|..
T Consensus       112 ~GCYtc~~ks~~~k~E~c~kCl~V~~~----~V~~~W------~e~nNeT~V~CyVgS~~~dvp~W~V~GVv  173 (251)
T PHA02982        112 LGCFTCEAKDAEGKEETCEKCLEIQKE----DILYVV------EEHNNETIITCFVGSKHGDVPRFIVAGIV  173 (251)
T ss_pred             CCceEEEEecCCCchheeheeeeEecc----eEEEEE------EecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence            9999999987554433 3455555210    111111      11223356889885553333389887764

>KOG4597|consensus

Probab=96.75  E-value=0.0031  Score=50.54  Aligned_cols=87  Identities=26%  Similarity=0.253  Sum_probs=65.8

Q ss_pred             CCCccEEecCCcEEEEEEEeeeCCCeeEEEE---CCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQ---EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG  118 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~  118 (292)
                      -+....+..+++..++|-+.|.+.+.|+|.+   +...+...+.....+........|.|-+....|+|.|+|.+.+..|
T Consensus       202 cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g  281 (560)
T KOG4597|consen  202 CPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAG  281 (560)
T ss_pred             CcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccc
Confidence            3445567788999999999999999999976   3344433344445555566667899999999999999999999888


Q ss_pred             CeeEEEEEEE
Q psy15128        119 STTVRAFLQV  128 (292)
Q Consensus       119 ~~~~~~~l~v  128 (292)
                      .....+.+.+
T Consensus       282 ~~~rdv~c~s  291 (560)
T KOG4597|consen  282 FLRRDVPCSS  291 (560)
T ss_pred             eeeccceeee
Confidence            7766665544

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.73  E-value=0.0046  Score=40.95  Aligned_cols=77  Identities=12%  Similarity=0.128  Sum_probs=37.4

Q ss_pred             EEeCCCceEEEeeCCCC-----CCCCeEEEeEcCeEeccCCCceEEecCCCcc------cccccccccccccccccccee
Q psy15128        209 RVASGETALLECGPPKG-----QPEPTLHWKKNGQFIDLESSKRVSILGDPWF------DSRRSRSIFGSVLGALSDDQW  277 (292)
Q Consensus       209 ~~~~g~~~~l~C~~~~~-----~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~l~i~~~~~~~~g~y  277 (292)
                      ...-++.|.|.|.+ ..     .+.-.+.|.++|+.+..-++..-......+.      ..+...+|.+...... .|+|
T Consensus        23 ~t~CN~tV~IPC~v-~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnY  100 (130)
T PF08204_consen   23 YTVCNDTVVIPCFV-NNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNY  100 (130)
T ss_dssp             E-TT-SEEEE--BB-SS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEE
T ss_pred             EEecCCCEEEEeEe-ccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccce
Confidence            34568999999998 43     1233699999998874322221111011110      0111223444433333 8999


Q ss_pred             EEEEeecccc
Q psy15128        278 KLIAKNIRNQ  287 (292)
Q Consensus       278 ~C~a~n~~g~  287 (292)
                      +|.|.+.-.+
T Consensus       101 TCeVt~~~~e  110 (130)
T PF08204_consen  101 TCEVTELSRE  110 (130)
T ss_dssp             EEEEEETTEE
T ss_pred             EEEEEecCCC
Confidence            9999866544

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>KOG0613|consensus

Probab=96.37  E-value=0.02  Score=51.89  Aligned_cols=203  Identities=14%  Similarity=0.032  Sum_probs=111.9

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEe----------------CCCcEE---eCCCccEEecCCcEEEEEEEee
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH----------------APPSFV---VRPQDQKVGLNGIASFQCVAEG   62 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~----------------~~p~~~---~~~~~~~~~~g~~~~l~C~~~~   62 (292)
                      |.+-..++.+.|+|...+..+..... +.-.+.                .++...   .....+....+..+++.|...+
T Consensus       282 i~~~~~~~~~s~t~~~~~~~~q~~~~-v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~  360 (1205)
T KOG0613|consen  282 IQNDGPEPELSWTVADKRQGCQDRFK-VTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSG  360 (1205)
T ss_pred             ccccCCccccceeeecccCCccccee-eeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccC
Confidence            34555677788888887776655444 332221                111111   1112233444667889998888


Q ss_pred             eCCCe-eEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEe
Q psy15128         63 SPLPS-VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQV  141 (292)
Q Consensus        63 ~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~  141 (292)
                      ...+. +.|+.+........+...-.........+.|..+...+.+.|.|.+.|..+.........+........+....
T Consensus       361 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~k  440 (1205)
T KOG0613|consen  361 TQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFK  440 (1205)
T ss_pred             CcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCcccc
Confidence            76664 99998765433222222222222334578888999999999999999988775544333333222112222222


Q ss_pred             CCCCceecCC--CeEEEEeEeccCCC--CceEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCCCC
Q psy15128        142 GPSNQTLPLH--SVAFLPCQAVGSPP--PHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEP  205 (292)
Q Consensus       142 ~~~~~~~~~g--~~v~l~C~~~~~p~--~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g~~  205 (292)
                      ........++  +.+.+.|...+.+.  ..++|++++.+............-.+|.+......+.|.+
T Consensus       441 k~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~~l~r~~~tslLlk~~~~~~~A~~  508 (1205)
T KOG0613|consen  441 KDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSVTLTRDVLTSLLLKVASLSDGAQY  508 (1205)
T ss_pred             ccccccccccCCcccccccCCCCccccceeEeeccCCcccccccccccccchhhheeeccCCCccchh
Confidence            2222233333  78889998877763  3466777765554322222222223566666666677644

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=96.14  E-value=0.011  Score=43.84  Aligned_cols=50  Identities=20%  Similarity=0.408  Sum_probs=39.0

Q ss_pred             CCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         64 PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        64 ~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      ..|.+.|...++...    .......+...+.|.+.+...+++|.|+|......
T Consensus        11 iDP~y~W~GP~g~~l----~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPL----SGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCccc----CCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence            356899998766543    23445667788899999999999999999987654

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA03042 CD47-like protein; Provisional

Probab=96.05  E-value=0.086  Score=39.48  Aligned_cols=71  Identities=13%  Similarity=0.150  Sum_probs=45.8

Q ss_pred             EecCCcEEEEEEEeee-----CCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeE
Q psy15128         48 VGLNGIASFQCVAEGS-----PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV  122 (292)
Q Consensus        48 ~~~g~~~~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~  122 (292)
                      ..-++++.+.|.+...     ....+.|..++..+....+.+        .++|++.... .-.|+|+|.+.+.......
T Consensus        28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn--------~aSL~~~f~~-~l~GNYTCEv~~l~n~gk~   98 (286)
T PHA03042         28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTN--------TSSLKFNFSK-NLSGNYTCEAINKFNKIKN   98 (286)
T ss_pred             EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCc--------ceEEEEeccc-cCCCceeEEEeecccCccE
Confidence            3457899999988652     244699999998876444331        1355555433 3479999999876554444


Q ss_pred             EEEEE
Q psy15128        123 RAFLQ  127 (292)
Q Consensus       123 ~~~l~  127 (292)
                      ...+.
T Consensus        99 ~IeLk  103 (286)
T PHA03042         99 TIELQ  103 (286)
T ss_pred             EEEEE
Confidence            44443

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=95.52  E-value=0.42  Score=38.05  Aligned_cols=122  Identities=16%  Similarity=0.199  Sum_probs=71.1

Q ss_pred             cEEecCCcEEEEEEEee---eCCCeeEEEECCeEEe------------eccCCCcceeEEe---------eecEEEEccC
Q psy15128         46 QKVGLNGIASFQCVAEG---SPLPSVFWTQEGSQVL------------MFPGNAYGHLHVT---------QEGTLRIQGV  101 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~---~~~~~v~W~~~~~~~~------------~~~~~~~~~~~~~---------~~~~l~i~~~  101 (292)
                      ..+..|..+.|.|.+.-   .......|+-.+-++-            .........+...         ..++|+|.++
T Consensus       274 ~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka  353 (500)
T PHA02914        274 VMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA  353 (500)
T ss_pred             eEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence            45667999999998864   2344688976442210            0011111111111         1347999999


Q ss_pred             CCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCC-eEEEEeEeccC--CCCceEEEeCCeeCC
Q psy15128        102 QKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHS-VAFLPCQAVGS--PPPHIRWYKNGNSLP  178 (292)
Q Consensus       102 ~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~-~v~l~C~~~~~--p~~~~~W~~~~~~l~  178 (292)
                      ..+.+|-|+|++....-......-|.|..     ...+.      ...+|. .-.+.|-+..+  .++.+.|..+|....
T Consensus       354 ~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d-----~V~f~------W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~  422 (500)
T PHA02914        354 HINNAGCYEAQAFMGKFKEECRHCFKVAD-----HVFFK------WNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFG  422 (500)
T ss_pred             EEEcCCceEEEEecCcchhhhhhheEecc-----EEEEE------EEeccCceEEEEEEEEecccCCceeEEEEccEEec
Confidence            99999999999986544444444555432     11111      122433 34678887444  455699998887654

>PHA03042 CD47-like protein; Provisional

Probab=95.49  E-value=0.049  Score=40.72  Aligned_cols=61  Identities=16%  Similarity=0.161  Sum_probs=38.9

Q ss_pred             eCCCceEEEeeCCCCC-----CCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        211 ASGETALLECGPPKGQ-----PEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       211 ~~g~~~~l~C~~~~~~-----p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      .-++++.+.|.+ ...     ....+.|.++|+.+...++.+.             .+|.. ..+..-.|+|+|.|.+..
T Consensus        29 ~CN~TV~IpC~v-~n~~~~ni~~~~V~Wkf~~~~If~~n~tn~-------------aSL~~-~f~~~l~GNYTCEv~~l~   93 (286)
T PHA03042         29 TCNKTIVIVCNL-NLLIYYNISNIHINWKFNNKVIFKKNNTNT-------------SSLKF-NFSKNLSGNYTCEAINKF   93 (286)
T ss_pred             ecCceEEEEeec-CChhhcCccceEEEEEeCCeeEEEecCCcc-------------eEEEE-eccccCCCceeEEEeecc
Confidence            467899999997 432     2446999999988853332211             01111 233445899999999765


Q ss_pred             c
Q psy15128        286 N  286 (292)
Q Consensus       286 g  286 (292)
                      -
T Consensus        94 n   94 (286)
T PHA03042         94 N   94 (286)
T ss_pred             c
Confidence            4

>PHA02982 hypothetical protein; Provisional

Probab=95.47  E-value=0.045  Score=39.12  Aligned_cols=84  Identities=15%  Similarity=0.221  Sum_probs=51.6

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEc-CeEeccCCCceEEecC-----CCc---c---ccccccccccccccccc
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKN-GQFIDLESSKRVSILG-----DPW---F---DSRRSRSIFGSVLGALS  273 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~-g~~~~~~~~~~~~~~~-----~~~---~---~~~~~~~l~i~~~~~~~  273 (292)
                      .+.....+++|.|+|....+.--....|+.+ |..+.........+..     +.+   +   .....++|+|..+.+..
T Consensus        32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N  111 (251)
T PHA02982         32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN  111 (251)
T ss_pred             hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence            3556778999999998644444457889874 3333211111111100     000   0   11334579999999999


Q ss_pred             cceeEEEEeecccccc
Q psy15128        274 DDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       274 ~g~y~C~a~n~~g~~~  289 (292)
                      .|=|+|.|....|...
T Consensus       112 ~GCYtc~~ks~~~k~E  127 (251)
T PHA02982        112 LGCFTCEAKDAEGKEE  127 (251)
T ss_pred             CCceEEEEecCCCchh
Confidence            9999999998766543

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=95.46  E-value=0.094  Score=34.09  Aligned_cols=74  Identities=14%  Similarity=-0.034  Sum_probs=43.4

Q ss_pred             ceEEeCCCceEEEeeCCCCCCC---CeEEEeEc--CeEec-----cCCCceEEecCCCc----ccccccccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQPE---PTLHWKKN--GQFID-----LESSKRVSILGDPW----FDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~---~~~~W~~~--g~~~~-----~~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~  272 (292)
                      ...+..|..++|+|.+ .++..   -.+.|.|.  | .++     ...+.........+    ........|.+..++.+
T Consensus         7 ~~lv~p~~sv~LsC~~-sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~   84 (115)
T cd05721           7 PVLASSNGAASLVCEY-TYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRAN   84 (115)
T ss_pred             CeEEcCCCCEEEEEEe-cCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHH
Confidence            4567889999999997 55332   36889883  3 211     01111110011100    11133347889999999


Q ss_pred             ccceeEEEEe
Q psy15128        273 SDDQWKLIAK  282 (292)
Q Consensus       273 ~~g~y~C~a~  282 (292)
                      |.+.|.|.-+
T Consensus        85 DTa~Y~Ca~e   94 (115)
T cd05721          85 QTDIYFCKIE   94 (115)
T ss_pred             HCeEEEEEee
Confidence            9999999653

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>KOG1480|consensus

Probab=95.28  E-value=0.018  Score=49.34  Aligned_cols=165  Identities=21%  Similarity=0.308  Sum_probs=94.3

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCC----CeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCC---eE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPL----PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDA---GF  108 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~----~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~---g~  108 (292)
                      .|.+...+....+..+..+.|.|.+...+.    +.-.|................... -....+.|.....++.   ..
T Consensus        24 l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~-~~~~si~Isr~~v~~~~~~~d  102 (909)
T KOG1480|consen   24 LPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLG-VREVSIDISRQQVETSGGPED  102 (909)
T ss_pred             cceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCccccee-EEeeeeeeehhhhhcccCccc
Confidence            356777788888899999999998864332    233466554433222211111111 1112333333333332   34


Q ss_pred             EEEE--EEeCCcCeeEE-EEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEe-ccCCCCceEEEeCCeeCCCCCccE
Q psy15128        109 FVCS--ALSVAGSTTVR-AFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA-VGSPPPHIRWYKNGNSLPPEDTRI  184 (292)
Q Consensus       109 Y~C~--~~~~~~~~~~~-~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~~~W~~~~~~l~~~~~~~  184 (292)
                      |.|+  +....|..... ..+.+.    +-...+...+....+..+..+.+.|.. .+.|...+.|++++..+.+ +...
T Consensus       103 ~~cQc~a~~~~g~~~s~~a~vr~a----y~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p-d~n~  177 (909)
T KOG1480|consen  103 YWCQCVAWSDDGTVKSRKATVRIA----YLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP-DANV  177 (909)
T ss_pred             eeeeeeeecCCCcchhhhHHHHHH----HHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCc-cccc
Confidence            7665  44443311111 001000    001223334555667788889999987 5667778999999988877 4555


Q ss_pred             EEcCCCcEEEEeeecCCCCCCc
Q psy15128        185 NVSSSGSLQIDVLRDDFRAEPK  206 (292)
Q Consensus       185 ~~~~~~~l~i~~~~~~d~g~~~  206 (292)
                      ....+..+.+..+...|.|.|.
T Consensus       178 ~~~~d~~li~~~arlsd~~nyt  199 (909)
T KOG1480|consen  178 IRASDHNLIISQARLSDSGNYT  199 (909)
T ss_pred             hhhhcCCccccchhhhhcccce
Confidence            6667778999999999998653

>PHA03052 Hypothetical protein; Provisional

Probab=95.20  E-value=0.1  Score=29.77  Aligned_cols=36  Identities=17%  Similarity=0.482  Sum_probs=29.7

Q ss_pred             cceEEeCCCceEEEeeCCCCCC--CCeEEEeEcCeEec
Q psy15128        206 KDTRVASGETALLECGPPKGQP--EPTLHWKKNGQFID  241 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~g~~~~  241 (292)
                      ....+..|..++|.|.|..+.|  .+.+.|.-|+..+.
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e   42 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE   42 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence            4567889999999999977655  45899999999884

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=94.59  E-value=0.61  Score=29.73  Aligned_cols=36  Identities=22%  Similarity=0.358  Sum_probs=26.7

Q ss_pred             ecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128         93 EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus        93 ~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      +-.|.|..+++.|+|.|.-++.+..|.. ....+.|.
T Consensus        70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V-~~~~FqVs  105 (108)
T PF11465_consen   70 NLALLIKAAQPQDSGLYCLEVTNESGKV-CTKNFQVS  105 (108)
T ss_dssp             TTEEEESS-SGGG-EEEEEEEEETTSCE-EEEEEEEE
T ss_pred             CceEEEeecCcccCceEEEEEEcCCCcE-EEEEEEEE
Confidence            4589999999999999999999987775 34444443

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=94.55  E-value=0.057  Score=40.26  Aligned_cols=49  Identities=12%  Similarity=0.169  Sum_probs=35.5

Q ss_pred             CCCeEEEeEc-CeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        227 PEPTLHWKKN-GQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       227 p~~~~~W~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      ..|.+.|... |+.+.  ...++.+.+.|        .|.+..+...++|.|+|..+-..
T Consensus        11 iDP~y~W~GP~g~~l~--gn~~~nIT~TG--------~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLS--GNSYVNITETG--------KLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccC--CCCeEEEccCc--------eEEeeccccccCCceEEEEEEEe
Confidence            3578999885 55553  34455554443        58899999999999999987554

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=94.45  E-value=2.1  Score=34.38  Aligned_cols=79  Identities=13%  Similarity=0.134  Sum_probs=48.6

Q ss_pred             cceEEeCCCceEEEeeCCC-C-CCCCeEEEeEcCeEec---------------cCCCceEEecCCCcc-ccccccccccc
Q psy15128        206 KDTRVASGETALLECGPPK-G-QPEPTLHWKKNGQFID---------------LESSKRVSILGDPWF-DSRRSRSIFGS  267 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~-~-~p~~~~~W~~~g~~~~---------------~~~~~~~~~~~~~~~-~~~~~~~l~i~  267 (292)
                      ....+..|..|.|.|..+. | ..-....|.--|.++-               ......+.+.....+ .--..++|+|.
T Consensus       272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk  351 (500)
T PHA02914        272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK  351 (500)
T ss_pred             ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence            3445667999999998522 1 2334788987665442               112222222222111 11234579999


Q ss_pred             cccccccceeEEEEeec
Q psy15128        268 VLGALSDDQWKLIAKNI  284 (292)
Q Consensus       268 ~~~~~~~g~y~C~a~n~  284 (292)
                      .+.....|=|.|.|...
T Consensus       352 ka~I~N~GCY~~~a~~g  368 (500)
T PHA02914        352 KAHINNAGCYEAQAFMG  368 (500)
T ss_pred             eEEEEcCCceEEEEecC
Confidence            99999999999999854

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=94.21  E-value=0.25  Score=30.69  Aligned_cols=63  Identities=19%  Similarity=0.186  Sum_probs=38.1

Q ss_pred             EEEEEE-EeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeC
Q psy15128         54 ASFQCV-AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        54 ~~l~C~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                      +.-.|. +.|.|++.|.|.-+=......+............+.+.+.+....|....+|.+.+.
T Consensus        23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~   86 (98)
T cd05890          23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYR   86 (98)
T ss_pred             EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEec
Confidence            456797 567899999997532111111111112222333456777777778888899999875

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>KOG4597|consensus

Probab=94.20  E-value=0.055  Score=43.77  Aligned_cols=78  Identities=10%  Similarity=0.009  Sum_probs=56.0

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccc---cccccccccccccccccceeEEEEe
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFD---SRRSRSIFGSVLGALSDDQWKLIAK  282 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~~~g~y~C~a~  282 (292)
                      ....+..+++..++|-+ .|.|.+.|.|.+--     .+..++.+..+..+.   .+.+-.|.|-+....|+|-|+|.|.
T Consensus       204 a~w~vg~wetcS~tCg~-~G~q~r~V~c~qv~-----anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~r  277 (560)
T KOG4597|consen  204 AEWFVGDWETCSSTCGV-QGRQYRVVTCEQVF-----ANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSAR  277 (560)
T ss_pred             chhhcccchhhcccccc-cCCcCceeeeehhh-----ccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccc
Confidence            34456789999999998 89999999997611     122333333333222   2444578888999999999999999


Q ss_pred             ecccccc
Q psy15128        283 NIRNQQQ  289 (292)
Q Consensus       283 n~~g~~~  289 (292)
                      |.+|...
T Consensus       278 cg~g~~~  284 (560)
T KOG4597|consen  278 CGAGFLR  284 (560)
T ss_pred             cccceee
Confidence            9998764

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=93.69  E-value=0.16  Score=39.79  Aligned_cols=22  Identities=18%  Similarity=0.377  Sum_probs=17.3

Q ss_pred             ceEEEeeCCCCCCCC-eEEEeEc
Q psy15128        215 TALLECGPPKGQPEP-TLHWKKN  236 (292)
Q Consensus       215 ~~~l~C~~~~~~p~~-~~~W~~~  236 (292)
                      .++|.|.|...+|.. .+.|.++
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            579999995556644 8899999

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=93.28  E-value=0.91  Score=35.81  Aligned_cols=21  Identities=10%  Similarity=0.270  Sum_probs=17.1

Q ss_pred             cEEEEEEEeeeCCC--eeEEEEC
Q psy15128         53 IASFQCVAEGSPLP--SVFWTQE   73 (292)
Q Consensus        53 ~~~l~C~~~~~~~~--~v~W~~~   73 (292)
                      .++|+|.+.|+.+.  .+.|.|+
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            57999999996433  6889999

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=92.74  E-value=0.91  Score=28.20  Aligned_cols=68  Identities=18%  Similarity=0.443  Sum_probs=38.6

Q ss_pred             CCCccEEecCCcEEEEEEEeee-----CCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEE
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGS-----PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA  113 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~  113 (292)
                      .+....+..|..++..|.+...     ....+.|..++..++   ...+... ....+.+++.+........|-|..
T Consensus         9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP---~~qy~~i-n~~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen    9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIP---GSQYRVI-NDTVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCEST---CGCEEEE-STTEEEEEESS--SSEEEEEEEEE
T ss_pred             ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECC---hhHccee-CCeEEEEEEccCCCCCceEEEEEE
Confidence            3445668899999999998642     445799998887542   2222111 111245667766655555566653

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>KOG0613|consensus

Probab=92.66  E-value=0.46  Score=43.74  Aligned_cols=77  Identities=10%  Similarity=-0.013  Sum_probs=51.9

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCe-EEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        207 DTRVASGETALLECGPPKGQPEPT-LHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      ...+..+..+.+.|.. .+.+.+. +.|++++.......+..+.....     .....+.+..+...+.+.|.|-|.|..
T Consensus       343 ~v~a~d~~~v~m~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-----~ts~~~~~~~~~~~e~~~~~~~a~n~~  416 (1205)
T KOG0613|consen  343 SVTARDNTLVEMPTAL-SGTQKPDEAQGYHGEEVSSESLGALPCPVGT-----VTSHTYTIKDAGPGEGYFTRVPAVNKG  416 (1205)
T ss_pred             eeccccCcceeecccc-cCCcCCchheeeccccccccccccccccccc-----ccCcchhhhhcCcccccccccceeccC
Confidence            3345567789999997 7777774 99999876654333221111111     122256677888888999999999999


Q ss_pred             cccc
Q psy15128        286 NQQQ  289 (292)
Q Consensus       286 g~~~  289 (292)
                      |...
T Consensus       417 g~~~  420 (1205)
T KOG0613|consen  417 GTEQ  420 (1205)
T ss_pred             Cccc
Confidence            9764

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=92.59  E-value=0.87  Score=28.29  Aligned_cols=67  Identities=18%  Similarity=0.253  Sum_probs=39.9

Q ss_pred             CcceEEeCCCceEEEeeCCCCC----CCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEE
Q psy15128        205 PKDTRVASGETALLECGPPKGQ----PEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLI  280 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~----p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~  280 (292)
                      ++...+..|..++..|....+-    ....+.|..|+..++   ..++....++.      ..+++..+.....-.|-|.
T Consensus        10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP---~~qy~~in~~~------SsVT~~~~~~~~~~L~cC~   80 (89)
T PF06328_consen   10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIP---GSQYRVINDTV------SSVTLPNLNPTGATLFCCK   80 (89)
T ss_dssp             CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCEST---CGCEEEESTTE------EEEEESS--SSEEEEEEEE
T ss_pred             cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECC---hhHcceeCCeE------EEEEEccCCCCCceEEEEE
Confidence            3556788999999999975442    345899999998774   34444444422      2344555555555556665

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=91.78  E-value=4  Score=29.96  Aligned_cols=24  Identities=21%  Similarity=0.387  Sum_probs=16.7

Q ss_pred             eEEEeeCCCCCC-C-CeEEEeEcCeEe
Q psy15128        216 ALLECGPPKGQP-E-PTLHWKKNGQFI  240 (292)
Q Consensus       216 ~~l~C~~~~~~p-~-~~~~W~~~g~~~  240 (292)
                      -...|.+ .-.| . ..+.|..++...
T Consensus        92 g~AVC~A-~CVP~~~v~l~W~v~d~~~  117 (211)
T PF02124_consen   92 GYAVCTA-RCVPRGNVTLRWSVGDDPS  117 (211)
T ss_pred             CEEEEEc-ceeeCCCeEEEEEECCccC
Confidence            3456887 6655 2 589999887654

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=91.27  E-value=0.4  Score=30.49  Aligned_cols=28  Identities=7%  Similarity=-0.032  Sum_probs=23.4

Q ss_pred             cccccccccccccceeEEEEeecccccc
Q psy15128        262 RSIFGSVLGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       262 ~~l~i~~~~~~~~g~y~C~a~n~~g~~~  289 (292)
                      ..|.|..++..|+|.|.-.++|..|...
T Consensus        71 laLlIkaAq~qDSG~Y~LEvT~~sG~V~   98 (108)
T PF11465_consen   71 LALLIKAAQPQDSGLYCLEVTNESGKVC   98 (108)
T ss_dssp             TEEEESS-SGGG-EEEEEEEEETTSCEE
T ss_pred             ceEEEeecCcccCceEEEEEEcCCCcEE
Confidence            4789999999999999999999999863

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=91.11  E-value=2.2  Score=25.85  Aligned_cols=38  Identities=26%  Similarity=0.469  Sum_probs=25.5

Q ss_pred             CCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         65 LPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        65 ~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      .+.+.|+..+...            ......+........|+|.+.|.|.
T Consensus        26 ~~~~~l~~~~~k~------------~~~~~~~~~~~~~~~d~G~w~C~a~   63 (80)
T PF05790_consen   26 KPSLFLENPGKKS------------LETKKLVSTFTPTTEDSGTWVCTAS   63 (80)
T ss_dssp             CEEEEEECSSCEE------------EEESSEEEEESBTCGGSEEEEEEEE
T ss_pred             ChhheeeccCccc------------cccceEEEEecCCCCCCEEEEEEEc
Confidence            3466676655433            2234456677778899999999995

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA03052 Hypothetical protein; Provisional

Probab=89.57  E-value=2.6  Score=24.33  Aligned_cols=35  Identities=20%  Similarity=0.377  Sum_probs=25.6

Q ss_pred             CCccEEecCCcEEEEEEEeee---CCCeeEEEECCeEE
Q psy15128         43 PQDQKVGLNGIASFQCVAEGS---PLPSVFWTQEGSQV   77 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~---~~~~v~W~~~~~~~   77 (292)
                      |....+..|..++|.|.+.-.   ..+.+.|.-++..+
T Consensus         4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            355678889999999988432   24468888887665

>PHA03189 UL14 tegument protein; Provisional

Probab=89.15  E-value=1.4  Score=33.90  Aligned_cols=78  Identities=10%  Similarity=0.162  Sum_probs=41.0

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCC--eEE-----EeE----------cCeEeccCCCceEEecCCC--ccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEP--TLH-----WKK----------NGQFIDLESSKRVSILGDP--WFDSRRSRSIF  265 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~--~~~-----W~~----------~g~~~~~~~~~~~~~~~~~--~~~~~~~~~l~  265 (292)
                      +...-+..|+.+++.|.+ .....|  +|.     |.-          .|..+.  ++....+.+..  +.+......|+
T Consensus        59 pAP~l~pyGdrvtVpC~f-p~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~--ndl~~~L~~~~W~Fedlg~aq~lt  135 (348)
T PHA03189         59 PAPLLVPYGDRVTVPCTF-PTHDWPEVSIRARFCYSPERSRELVVDADSGGELH--NDLTYRLPEASWKFEDLGAAQRLT  135 (348)
T ss_pred             CCccccCCCceeeeeeee-cCCCCceeeEEEEEeeccccceEEEEEcccCCEec--cccceecccceeeeecccceeEEE
Confidence            345667789999999996 333322  322     211          122221  11112221111  12222333455


Q ss_pred             cc-cccccccceeEEEEeecc
Q psy15128        266 GS-VLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       266 i~-~~~~~~~g~y~C~a~n~~  285 (292)
                      ++ .+...-+|.|.|+..|..
T Consensus       136 LtF~v~t~taG~Y~CvLrN~t  156 (348)
T PHA03189        136 LTFRVSTSTAGMYECVLRNET  156 (348)
T ss_pred             EEEEEEecccceEEEEecccc
Confidence            55 566777999999999864

>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []

Probab=88.60  E-value=2.2  Score=24.82  Aligned_cols=60  Identities=15%  Similarity=0.195  Sum_probs=37.2

Q ss_pred             eEEeCCCceEEEeeCCCCCCCCeEEEeEcC-eEeccCCCceEEecCCCcccccccccccccccccccccee--EEEEeec
Q psy15128        208 TRVASGETALLECGPPKGQPEPTLHWKKNG-QFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQW--KLIAKNI  284 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y--~C~a~n~  284 (292)
                      ..+..|+.+.|.... .......+.|.+++ ....  .+..+.                   ......|.|  +..|.|.
T Consensus         6 ~~~~~g~~v~f~~~~-~~g~~~~y~W~fgd~~~~~--~~~~~t-------------------~ty~~~G~y~V~ltv~n~   63 (69)
T PF00801_consen    6 TYVPTGQPVTFTASS-SDGSPVTYSWDFGDNGTVS--TGSSVT-------------------HTYSSPGTYTVTLTVTNG   63 (69)
T ss_dssp             SCEBTTSEEEEEETT-TTSSECEEEEE-SSESEEE--CSSEEE-------------------EEESSSEEEEEEEEEEET
T ss_pred             CEEcCCCEEEEEEEc-cCCCCeEEEEEECCCCccc--cCCCEE-------------------EEcCCCeEEEEEEEEEEC
Confidence            356789999999986 44455699999987 2221  111111                   223357876  5677788


Q ss_pred             ccccc
Q psy15128        285 RNQQQ  289 (292)
Q Consensus       285 ~g~~~  289 (292)
                      .|..+
T Consensus        64 ~g~~t   68 (69)
T PF00801_consen   64 VGSAT   68 (69)
T ss_dssp             TSEEE
T ss_pred             CCCcC
Confidence            88764

Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=88.42  E-value=4.2  Score=25.17  Aligned_cols=55  Identities=9%  Similarity=0.200  Sum_probs=34.9

Q ss_pred             CCceEEEeeCCCCCCCCeEEEeEcCeEeccC-CCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        213 GETALLECGPPKGQPEPTLHWKKNGQFIDLE-SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      .+.+.|.+..  +.  ..+.|+.||+.+-.. ....+.                   ......|.|+-.+....|....
T Consensus        31 ~~~l~l~a~~--~~--~~~~W~vdg~~~g~~~~~~~~~-------------------~~~~~~G~h~l~vvD~~G~~~~   86 (89)
T PF06832_consen   31 RQPLVLKAAG--GR--GPVYWFVDGEPLGTTQPGHQLF-------------------WQPDRPGEHTLTVVDAQGRSAS   86 (89)
T ss_pred             cceEEEEEeC--CC--CcEEEEECCEEcccCCCCCeEE-------------------eCCCCCeeEEEEEEcCCCCEEE
Confidence            4556666653  33  389999999998311 122222                   1234788999999888887653

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PHA03282 envelope glycoprotein E; Provisional

Probab=83.73  E-value=24  Score=29.40  Aligned_cols=22  Identities=18%  Similarity=0.567  Sum_probs=19.8

Q ss_pred             EEEEccCCCCCCeEEEEEEEeC
Q psy15128         95 TLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        95 ~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                      .|.+.++..+++|.|-|.+...
T Consensus       334 dL~F~nAp~saSGLYVfVl~yN  355 (540)
T PHA03282        334 NLQLRDASEASGGLYVCVVYVN  355 (540)
T ss_pred             ceEecCCCcccCceEEEEEEEC
Confidence            6999999999999999998743

>PHA03112 IL-18 binding protein; Provisional

Probab=82.94  E-value=4.7  Score=27.33  Aligned_cols=27  Identities=22%  Similarity=0.358  Sum_probs=20.6

Q ss_pred             eCCCceEEEeeCCCCCCC-CeEEEeEcC
Q psy15128        211 ASGETALLECGPPKGQPE-PTLHWKKNG  237 (292)
Q Consensus       211 ~~g~~~~l~C~~~~~~p~-~~~~W~~~g  237 (292)
                      ..++.+.|+|.+....|. ..+.|..++
T Consensus        36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn   63 (141)
T PHA03112         36 KETEKVVLECRGCSYFPKFSYVYWLIGN   63 (141)
T ss_pred             CCCCEEEEEEECccCCCCceEEEEEcCC
Confidence            458999999998544564 578999765

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=81.47  E-value=19  Score=26.58  Aligned_cols=142  Identities=18%  Similarity=0.240  Sum_probs=67.4

Q ss_pred             eeEEEECCeEEeeccCCCcceeE------EeeecEEEE-ccCCCCCCeEEEEEEEeCCcC-eeEEEEEEEEeecCCCCCe
Q psy15128         67 SVFWTQEGSQVLMFPGNAYGHLH------VTQEGTLRI-QGVQKEDAGFFVCSALSVAGS-TTVRAFLQVTSVEDTPPPI  138 (292)
Q Consensus        67 ~v~W~~~~~~~~~~~~~~~~~~~------~~~~~~l~i-~~~~~~d~g~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~  138 (292)
                      .+.|+.++..+.  .........      ....+.|.+ .+...+..-..+|.+.-.... .....+..+. ....++|.
T Consensus         8 ~~~Wf~dg~~v~--~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~-P~Vy~~P~   84 (211)
T PF02124_consen    8 RFRWFEDGNPVE--PRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATAT-PSVYPKPR   84 (211)
T ss_pred             EEEEEECCEeCC--ccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccc-cceecCCE
Confidence            678998887653  111111111      222335666 333334445789998743222 2222111111 11123444


Q ss_pred             EEeCCCCceecCCCeEEEEeEeccCCC--CceEEEeCCeeCCCCCccE----EEcCCCcEEEEeeecCCCCCCcceEEeC
Q psy15128        139 VQVGPSNQTLPLHSVAFLPCQAVGSPP--PHIRWYKNGNSLPPEDTRI----NVSSSGSLQIDVLRDDFRAEPKDTRVAS  212 (292)
Q Consensus       139 ~~~~~~~~~~~~g~~v~l~C~~~~~p~--~~~~W~~~~~~l~~~~~~~----~~~~~~~l~i~~~~~~d~g~~~~~~~~~  212 (292)
                      +.+     ....|   ...|.+.--|.  ..+.|.-++..........    -....+...|.+.....         ..
T Consensus        85 vsv-----~F~~g---~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls---------~~  147 (211)
T PF02124_consen   85 VSV-----RFEDG---YAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLS---------DE  147 (211)
T ss_pred             EEE-----EecCC---EEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCC---------cc
Confidence            433     22233   34677654442  5799998776542211111    11122345555443322         23


Q ss_pred             CCceEEEeeCCCCCCCC
Q psy15128        213 GETALLECGPPKGQPEP  229 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~  229 (292)
                      ...++.+|.. .|+|..
T Consensus       148 ~~~~~YtC~l-~GYP~~  163 (211)
T PF02124_consen  148 DGPVEYTCRL-IGYPDI  163 (211)
T ss_pred             CCceeEEEEE-eeCCCC
Confidence            5678899997 898853

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	292
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		8e-20
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		8e-20
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		9e-18
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		1e-17
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-16
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		2e-16
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-14
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-14
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-14
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-14
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		7e-14
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		6e-13
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-12
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		7e-12
3kld_A	384	Ptprg Cntn4 Complex Length = 384		2e-11
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		2e-11
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		8e-11
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		1e-09
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		8e-11
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		5e-08
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		9e-11
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		2e-07
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		9e-11
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		2e-07
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		1e-10
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		4e-10
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		1e-10
2edj_A	100	Solution Structure Of The Fifth Ig-Like Domain From		3e-10
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		3e-10
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		5e-10
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		8e-10
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		2e-09
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		3e-09
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		6e-08
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		2e-08
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		8e-08
3grw_A	241	Fgfr3 In Complex With A Fab Length = 241		5e-08
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		5e-08
2kkq_A	116	Solution Nmr Structure Of The Ig-Like C2-Type 2 Dom		9e-08
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		9e-08
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		1e-07
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		1e-07
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		1e-07
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		2e-07
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		4e-07
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		4e-06
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		4e-07
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		1e-06
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		5e-07
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		7e-07
2c5d_C	195	Structure Of A Minimal Gas6-Axl Complex Length = 19		5e-07
2eo9_A	118	Solution Structure Of The Fifth Ig-Like Domain From		1e-06
2eo9_A	118	Solution Structure Of The Fifth Ig-Like Domain From		2e-06
1e07_A	642	Model Of Human Carcinoembryonic Antigen By Homology		2e-06
3v6b_R	424	Vegfr-2VEGF-E Complex Structure Length = 424		4e-06
1ktk_E	247	Complex Of Streptococcal Pyrogenic Enterotoxin C (S		8e-06
3oj2_C	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		8e-06
3s97_C	201	Ptprz Cntn1 Complex Length = 201		1e-05
1ev2_E	220	Crystal Structure Of Fgf2 In Complex With The Extra		1e-05
1e0o_B	219	Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C		2e-05
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		2e-05
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		2e-05
3hg1_E	244	Germline-Governed Recognition Of A Cancer Epitope B		2e-05
1ii4_E	220	Crystal Structure Of Ser252trp Apert Mutant Fgf Rec		4e-05
3k0w_A	218	Crystal Structure Of The Tandem Ig-Like C2-Type 2 D		4e-05
3ojm_B	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		6e-05
2fdb_P	220	Crystal Structure Of Fibroblast Growth Factor (Fgf)		6e-05
1iil_E	220	Crystal Structure Of Pro253arg Apert Mutant Fgf Rec		6e-05
1rhf_A	182	Crystal Structure Of Human Tyro3-D1d2 Length = 182		6e-05
3kvq_A	108	Crystal Structure Of Vegfr2 Extracellular Domain D7		7e-05
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		7e-05
3puc_A	99	Atomic Resolution Structure Of Titin Domain M7 Leng		1e-04
2wwk_O	109	Crystal Structure Of The Titin M10-Obscurin Like 1		1e-04
1nun_B	230	Crystal Structure Analysis Of The Fgf10-fgfr2b Comp		1e-04
1djs_A	216	Ligand-binding Portion Of Fibroblast Growth Factor		2e-04
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		2e-04
1u2h_A	99	X-Ray Structure Of The N-Terminally Truncated Human		3e-04
2v9t_A	117	Complex Between The Second Lrr Domain Of Slit2 And		3e-04
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		4e-04
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		4e-04
2dl9_A	103	Solution Structure Of The Ig-Like Domain Of Human L		5e-04
3o4l_E	245	Genetic And Structural Basis For Selection Of A Ubi		5e-04
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		5e-04
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		7e-04
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		7e-04
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		7e-04
1ymm_E	249	TcrHLA-Dr2bMBP-Peptide Complex Length = 249		8e-04
1fhg_A	154	High Resolution Refinement Of Telokin Length = 154		9e-04

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 84/179 (46%), Gaps = 39/179 (21%)
Query: 143 PSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRIN----------------- 185
           P++  +  +  A L C+  G P P I W+K+G  +   + + +                 
Sbjct: 16  PTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQG 75
Query: 186 --------------------VSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKG 225
                               VS   SLQI VLRDDFR EPKDTRVA GETALLECGPPKG
Sbjct: 76  KKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKG 135
Query: 226 QPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI 284
            PEPTL W K+G  + L+  K +S             ++  S +  + +  +K IA+N+
Sbjct: 136 IPEPTLIWIKDG--VPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNL 192

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 84/179 (46%), Gaps = 39/179 (21%)
Query: 143 PSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRIN----------------- 185
           P++  +  +  A L C+  G P P I W+K+G  +   + + +                 
Sbjct: 16  PTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQG 75
Query: 186 --------------------VSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKG 225
                               VS   SLQI VLRDDFR EPKDTRVA GETALLECGPPKG
Sbjct: 76  KKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKG 135
Query: 226 QPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI 284
            PEPTL W K+G  + L+  K +S             ++  S +  + +  +K IA+N+
Sbjct: 136 IPEPTLIWIKDG--VPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNL 192

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 87.4 bits (215), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 75/161 (46%), Gaps = 42/161 (26%)
Query: 132 EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNG----------------- 174
           ED PP IV+  PS+  +     A L C+A G P P I WYK G                 
Sbjct: 6   EDFPPRIVE-HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLL 64
Query: 175 --------------NSLPPEDTRI---------NVSSSGSLQIDVLRDDFRAEPKDTRVA 211
                          S P E   +          VS   SL++ +LRDDFR  P D  VA
Sbjct: 65  PSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVA 124
Query: 212 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILG 252
            GE A++EC PP+G PEPT+ WKK+G  +D +  +R++I G
Sbjct: 125 VGEPAVMECQPPRGHPEPTISWKKDGSPLD-DKDERITIRG 164

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 120/283 (42%), Gaps = 51/283 (18%)
Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
           +I +    D GKY C V N VG  E+   +LTV AP S  + P  Q V     A F C  
Sbjct: 309 IIKDAVVEDSGKYLCVVNNSVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQY 367
Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
            G+P+ +V W ++        G A GH     E  LRI+ V+KED G + C   +   S 
Sbjct: 368 TGNPIKTVSWMKD--------GKAIGH----SESVLRIESVKKEDKGMYQCFVRNDRESA 415
Query: 121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE 180
              A L++    D  PP+++     +T+      FL C A G+P P I W  +G  +   
Sbjct: 416 EASAELKLGGRFD--PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANN 473
Query: 181 D---------------TRINVSS--------------------SGSLQIDVLRDDFRAEP 205
           D               + +N++S                      S +++V    +  + 
Sbjct: 474 DRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQM 533
Query: 206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRV 248
           +   + +GET ++ C P  G P  ++ W+++ + + +   ++V
Sbjct: 534 EKKAIVAGETLIVTC-PVAGYPIDSIVWERDNRALPINRKQKV 575

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 11/172 (6%)
Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG- 94
           PP  + +PQ+Q V + G+ASF C A G P PS+ W + G +V    G    +  + Q G 
Sbjct: 6   PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKV---SGTQSRYTVLEQPGG 62
Query: 95  --TLRIQGVQ--KEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP--PIVQVGPSNQTL 148
              LRI+ V+  ++DA +   +   V  + +  A L +   + TP   P++  GP  + +
Sbjct: 63  ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVI 122
Query: 149 PLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDD 200
            +     + C+A+G+P P+I W KN   +   + R ++   G LQI+  R++
Sbjct: 123 EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL-KDGFLQIENSREE 173

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 11/172 (6%)
Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG- 94
           PP  + +PQ+Q V + G+ASF C A G P PS+ W + G +V    G    +  + Q G 
Sbjct: 8   PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKV---SGTQSRYTVLEQPGG 64
Query: 95  --TLRIQGVQ--KEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP--PIVQVGPSNQTL 148
              LRI+ V+  ++DA +   +   V  + +  A L +   + TP   P++  GP  + +
Sbjct: 65  ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVI 124
Query: 149 PLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDD 200
            +     + C+A+G+P P+I W KN   +   + R ++   G LQI+  R++
Sbjct: 125 EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL-KDGFLQIENSREE 175

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 10/171 (5%)
Query: 32  TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
           T  +PP F+ +P DQ     G+ASF C A G P P V W ++G +V       +  +   
Sbjct: 2   TGESPPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV---NSQRFETIEFD 58
Query: 92  QEG--TLRIQGVQK-EDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP--PIVQVGPSNQ 146
           +     LRIQ ++   D   + C A +  G  TV A L V   +  PP  P + +GP  +
Sbjct: 59  ESAGAVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLK 118
Query: 147 TLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT--RINVSSSGSLQID 195
            +     A + C A G+P P I W+K+   + P  +  RI    SG LQI+
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIE 169

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 80/175 (45%), Gaps = 18/175 (10%)
Query: 32  TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGS-------QVLMFPGNA 84
           T  + P F+  P+DQ     G+ASF C A G P P + W ++G        +V+ F   A
Sbjct: 2   TGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGA 61
Query: 85  YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP--PIVQVG 142
              L +     LR+Q     D   + C+A +  G     A L V   E  PP  P + +G
Sbjct: 62  GSVLRIQ---PLRVQ----RDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMG 114
Query: 143 PSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP--EDTRINVSSSGSLQID 195
           P  + +     A + C A G+P P I W+K+   + P   + RI    SG+LQI+
Sbjct: 115 PQLKVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIE 169

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 10/171 (5%)
Query: 32  TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
           T   PP F+  P+DQ     G+ASF C A G P P V W ++G +V       +  +   
Sbjct: 2   TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV---NSQRFETIEFD 58
Query: 92  QE--GTLRIQGVQK-EDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP--PIVQVGPSNQ 146
           +     LRIQ ++   D   + C A +  G  TV A L V   +  P   P + +GP  +
Sbjct: 59  ESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK 118
Query: 147 TLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP--EDTRINVSSSGSLQID 195
            +     A + C A G+P P I W+K+   + P   + RI    SG+LQI+
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIE 169

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 10/171 (5%)
Query: 32  TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
           T   PP F+  P+DQ     G+ASF C A G P P V W ++G +V       +  +   
Sbjct: 2   TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV---NSQRFETIEFD 58
Query: 92  QE--GTLRIQGVQK-EDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP--PIVQVGPSNQ 146
           +     LRIQ ++   D   + C A +  G  TV A L V   +  P   P + +GP  +
Sbjct: 59  ESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK 118
Query: 147 TLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP--EDTRINVSSSGSLQID 195
            +     A + C A G+P P I W+K+   + P   + RI    SG+LQI+
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIE 169

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 10/171 (5%)
Query: 32  TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
           T   PP F+  P+DQ     G+ASF C A G P P V W ++G +V       +  +   
Sbjct: 2   TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV---NSQRFETIEFD 58
Query: 92  QE--GTLRIQGVQK-EDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP--PIVQVGPSNQ 146
           +     LRIQ ++   D   + C A +  G  TV A L V   +  P   P + +GP  +
Sbjct: 59  ESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK 118
Query: 147 TLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP--EDTRINVSSSGSLQID 195
            +     A + C A G+P P I W+K+   + P   + RI    SG+LQI+
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIE 169

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 18/170 (10%)
Query: 37  PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGS-------QVLMFPGNAYGHLH 89
           P FV  P+DQ     G+ASF C A G P P + W ++G        +V+ F   A   L 
Sbjct: 8   PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLR 67
Query: 90  VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP--PIVQVGPSNQT 147
           +     LR+Q     D   + C+A +  G     A L V   +  P   P + +GP  + 
Sbjct: 68  IQ---PLRVQ----RDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKV 120
Query: 148 LPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP--EDTRINVSSSGSLQID 195
           +     A + C A G+P P I W+K+   + P   + RI    SG+LQI+
Sbjct: 121 VEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIE 170

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 79/178 (44%), Gaps = 21/178 (11%)
Query: 32  TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
           T   PP F   P DQ     G+ASF C A G P P + W ++G +V     N    +   
Sbjct: 2   TGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKV----SNQRFEVIEF 57
Query: 92  QEGT---LRIQGVQK-EDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP--PIVQVGPSN 145
            +G+   LRIQ ++   D   + C A +  G  +V   L V   +  P   P + +GP  
Sbjct: 58  DDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQL 117
Query: 146 QTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT--------RINVSSSGSLQID 195
           + +     A + C A G+P P I W+K+     P DT        ++   S G+LQI+
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKD---FLPVDTSNNNGRIKQLRSESIGALQIE 172

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 110/290 (37%), Gaps = 42/290 (14%)
Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPAL-LTVH-APPSFVVRPQDQKVGLNGIASFQCV 59
           I +  +S  G+Y C   N +G   +   L L+ H  PP F ++P    + L    +F+C 
Sbjct: 161 ILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCH 220
Query: 60  AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
             G+    + W ++  ++   PG  Y    V    TL +  V K DAG + C A +VAG 
Sbjct: 221 VTGTAPIKITWAKDNREIR--PGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 278
Query: 120 TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP 179
            +  A L V      PP  ++    ++ +         C+  GSP   + WYK+   +  
Sbjct: 279 DSCSAQLGVQE----PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQE 334
Query: 180 ---------------EDTRINVSSSGSLQIDVLRDD----------------FRAEPKDT 208
                          E   ++V  SG    +                     FR +P   
Sbjct: 335 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPV 394
Query: 209 RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDS 258
               G    LEC   +G P   + W K+ +  +L S K+  I+ + +  S
Sbjct: 395 ETLKGADVHLEC-ELQGTPPFQVSWHKDKR--ELRSGKKYKIMSENFLTS 441

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 22/206 (10%)
Query: 2   ITEVKKSDEGKYQCYVQNMVGERET----------KPALLTVHAPPSFVVRPQDQKVGLN 51
           I +V+KSD G Y C V N V   +              ++  + P   V  P+       
Sbjct: 161 IAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKG 220
Query: 52  GIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
                +C A G+P+P++ W +   + +      +        G L I   Q+EDAG + C
Sbjct: 221 TTVKLECFALGNPVPTILWRRADGKPIARKARRH-----KSNGILEIPNFQQEDAGSYEC 275
Query: 112 SALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWY 171
            A +  G    +  L   +     P  VQ+  ++  + +    F  C+A G P P  RW 
Sbjct: 276 VAENSRGKNVAKGQLTFYA----QPNWVQI-INDIHVAMEESVFWECKANGRPKPTYRWL 330
Query: 172 KNGNSLPPEDTRINVSSSGSLQIDVL 197
           KNG+ L   D RI +   G+L I ++
Sbjct: 331 KNGDPLLTRD-RIQI-EQGTLNITIV 354

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 22/206 (10%)
Query: 2   ITEVKKSDEGKYQCYVQNMVGERET----------KPALLTVHAPPSFVVRPQDQKVGLN 51
           I +V+KSD G Y C V N V   +              ++  + P   V  P+       
Sbjct: 160 IAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKG 219
Query: 52  GIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
                +C A G+P+P++ W +   + +      +        G L I   Q+EDAG + C
Sbjct: 220 TTVKLECFALGNPVPTILWRRADGKPIARKARRH-----KSNGILEIPNFQQEDAGSYEC 274
Query: 112 SALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWY 171
            A +  G    +  L   +     P  VQ+  ++  + +    F  C+A G P P  RW 
Sbjct: 275 VAENSRGKNVAKGQLTFYA----QPNWVQI-INDIHVAMEESVFWECKANGRPKPTYRWL 329
Query: 172 KNGNSLPPEDTRINVSSSGSLQIDVL 197
           KNG+ L   D RI +   G+L I ++
Sbjct: 330 KNGDPLLTRD-RIQI-EQGTLNITIV 353

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
           +I+ V   D G Y C V     E  +  A LTV  PP F+  P +     +    F+C  
Sbjct: 278 LISNVTDDDSGTYTCVV-TYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAV 336
Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
            G P+P+V W + G  V+  P +   +  +     LRI GV K D GF+ C A + AG+ 
Sbjct: 337 SGKPVPTVNWMKNGDVVI--PSD---YFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNA 391
Query: 121 TVRAFLQV 128
              A L V
Sbjct: 392 QSSAQLIV 399

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 99/266 (37%), Gaps = 35/266 (13%)
Query: 7   KSDEGKYQCYVQ-NMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPL 65
           K DEG YQC       G   ++ A + V  P  F+ + +     +      +C   G P+
Sbjct: 91  KPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPM 150
Query: 66  PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT-VRA 124
           P++ W +    +   PG++   + V   G L+I  +Q  D+G + CSA + A + T   A
Sbjct: 151 PTIHWQKNQQDLNPIPGDS--RVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEA 208
Query: 125 FLQVTSVEDTPPPIVQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTR 183
            +++ S       +  +  PSN        A L C   G PPP   W +    +     +
Sbjct: 209 EVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKK 268
Query: 184 INVSSSGSLQIDVLRDD-----------------------------FRAEPKDTRVASGE 214
            ++    +L I  + DD                             F   P +       
Sbjct: 269 YSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESM 328
Query: 215 TALLECGPPKGQPEPTLHWKKNGQFI 240
               EC    G+P PT++W KNG  +
Sbjct: 329 DIEFECA-VSGKPVPTVNWMKNGDVV 353

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
           +I +    D GKY C V N VG  E+   +LTV AP S  + P  Q V     A F C  
Sbjct: 276 IIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQY 334
Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
            G+P+ +V W ++        G A GH     E  LRI+ V+KED G + C
Sbjct: 335 TGNPIKTVSWMKD--------GKAIGH----SESVLRIESVKKEDKGMYQC 373

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 28/204 (13%)
Query: 2   ITEVKKSDEGK-YQCYVQN-MVGERE--TKPALLTVHAPPSFV---VRPQDQ----KVGL 50
           I EV   D  K YQC  ++ + GE         L +  P   V   V PQD+     V L
Sbjct: 170 IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSVRPKVNPQDKHQFIDVEL 229
Query: 51  NGIASFQCVAEGSPLPSVFWTQ--EGS---QVLMFPGNAYGHLHVTQ-EGTLRIQGVQKE 104
               S  C+A+  P PS  W +  EG+   Q ++       +  V Q  GTL I+    E
Sbjct: 230 ASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVL------NDRVKQVSGTLIIKDAVVE 283
Query: 105 DAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSP 164
           D+G ++C   +  G  +V   L VT+     P   ++ P  QT+     A   CQ  G+P
Sbjct: 284 DSGKYLCVVNNSVGGESVETVLTVTA-----PLSAKIDPPTQTVDFGRPAVFTCQYTGNP 338
Query: 165 PPHIRWYKNGNSLPPEDTRINVSS 188
              + W K+G ++   ++ + + S
Sbjct: 339 IKTVSWMKDGKAIGHSESVLRIES 362

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
           +I +    D GKY C V N VG  E+   +LTV AP S  + P  Q V     A F C  
Sbjct: 273 IIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQY 331
Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
            G+P+ +V W ++        G A GH     E  LRI+ V+KED G + C
Sbjct: 332 TGNPIKTVSWMKD--------GKAIGH----SESVLRIESVKKEDKGMYQC 370

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 31/205 (15%)
Query: 2   ITEVKKSDEGK-YQCYVQN-MVGERE----------TKPALLTVHAPPSFVVRPQDQKVG 49
           I EV   D  K YQC  ++ + GE            T+P   +    P+ V +P +  V 
Sbjct: 168 IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVA 227
Query: 50  LNGIASFQCVAEGSPLPSVFWTQ--EGS---QVLMFPGNAYGHLHVTQ-EGTLRIQGVQK 103
                S  C A+G P PS  W +  EG+   Q ++       +  V Q  GTL I+    
Sbjct: 228 HT--ISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVL------NDRVKQVSGTLIIKDAVV 279
Query: 104 EDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS 163
           ED+G ++C   +  G  +V   L VT+     P   ++ P  QT+     A   CQ  G+
Sbjct: 280 EDSGKYLCVVNNSVGGESVETVLTVTA-----PLSAKIDPPTQTVDFGRPAVFTCQYTGN 334
Query: 164 PPPHIRWYKNGNSLPPEDTRINVSS 188
           P   + W K+G ++   ++ + + S
Sbjct: 335 PIKTVSWMKDGKAIGHSESVLRIES 359

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
           +I +    D GKY C V N VG  E+   +LTV AP S  + P  Q V     A F C  
Sbjct: 279 IIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQY 337
Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
            G+P+ +V W ++        G A GH     E  LRI+ V+KED G + C
Sbjct: 338 TGNPIKTVSWMKD--------GKAIGH----SESVLRIESVKKEDKGMYQC 376

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 31/205 (15%)
Query: 2   ITEVKKSDEGK-YQCYVQN-MVGERE----------TKPALLTVHAPPSFVVRPQDQKVG 49
           I EV   D  K YQC  ++ + GE            T+P   +    P+ V +P +  V 
Sbjct: 174 IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVA 233
Query: 50  LNGIASFQCVAEGSPLPSVFWTQ--EGS---QVLMFPGNAYGHLHVTQ-EGTLRIQGVQK 103
                S  C A+G P PS  W +  EG+   Q ++       +  V Q  GTL I+    
Sbjct: 234 HT--ISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVL------NDRVKQVSGTLIIKDAVV 285
Query: 104 EDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS 163
           ED+G ++C   +  G  +V   L VT+     P   ++ P  QT+     A   CQ  G+
Sbjct: 286 EDSGKYLCVVNNSVGGESVETVLTVTA-----PLSAKIDPPTQTVDFGRPAVFTCQYTGN 340
Query: 164 PPPHIRWYKNGNSLPPEDTRINVSS 188
           P   + W K+G ++   ++ + + S
Sbjct: 341 PIKTVSWMKDGKAIGHSESVLRIES 365

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 9/177 (5%)
Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQK-VGLNGIASFQCVA 60
           + +V K D G+Y CY  N+ G +++  A L V APP F+ + +  + V  +    ++C  
Sbjct: 65  VLKVTKGDAGQYTCYASNVAG-KDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECKI 123
Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
            GSP   V W ++ +++     + +    V     L +  +  ED+G + C A + AGS 
Sbjct: 124 GGSPEIKVLWYKDETEIQ--ESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181
Query: 121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
           +    L+V       PP+ +  P        +   L C+  G+PP  + W+K+   L
Sbjct: 182 SSSTSLKVKE-----PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL 233

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 96/255 (37%), Gaps = 40/255 (15%)
Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
           APP F ++P    + L    +F+C   G+    + W ++  ++   PG  Y    V    
Sbjct: 4   APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIR--PGGNYKMTLVENTA 61
Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVA 154
           TL +  V K DAG + C A +VAG  +  A L V +    PP  ++    ++ +      
Sbjct: 62  TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQA----PPRFIKKLEPSRIVKQDEHT 117
Query: 155 FLPCQAVGSPPPHIRWYKNGNSLPP---------------EDTRINVSSSGSLQIDVLRD 199
              C+  GSP   + WYK+   +                 E   ++V  SG    +    
Sbjct: 118 RYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNA 177
Query: 200 D----------------FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLE 243
                            FR +P       G    LEC   +G P   + W K+ +  +L 
Sbjct: 178 AGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLEC-ELQGTPPFQVSWHKDKR--ELR 234
Query: 244 SSKRVSILGDPWFDS 258
           S K+  I+ + +  S
Sbjct: 235 SGKKYKIMSENFLTS 249

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 16/162 (9%)
Query: 53  IASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG-TLRIQGVQKEDAGFFVC 111
           +A+F C  E  P P + WT+    + +F         + + G  L I  V+  D G + C
Sbjct: 24  VATFMCAVESYPQPEISWTRNKILIKLFDT----RYSIRENGQLLTILSVEDSDDGIYCC 79
Query: 112 SALS-VAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRW 170
           +A + V G+      LQV        P +   P N  +     A LPC  +G+P P + W
Sbjct: 80  TANNGVGGAVESCGALQVKM-----KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSW 134
Query: 171 YKNGNSLPPEDTRINVSSSGSLQI-DVLRDD---FRAEPKDT 208
            K G+S   E++RI V  SGSL+I +V ++D   +R   K++
Sbjct: 135 IK-GDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNS 175

>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homolog 2 Length = 100

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 36/63 (57%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQID 195
           PPI+  GP+NQTL +   A L C+A G P P I W K G + P  D R  +   G+LQI 
Sbjct: 8   PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIK 67
Query: 196 VLR 198
            LR
Sbjct: 68  NLR 70

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 9/177 (5%)
Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQK-VGLNGIASFQCVA 60
           + +V K D G+Y CY  N+ G +++  A L V  PP F+ + +  + V  +    ++C  
Sbjct: 65  VLKVTKGDAGQYTCYASNVAG-KDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI 123
Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
            GSP   V W ++ +++     + +    V     L +  +  ED+G + C A + AGS 
Sbjct: 124 GGSPEIKVLWYKDETEIQ--ESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181
Query: 121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
           +    L+V       PP+ +  P        +   L C+  G+PP  + W+K+   L
Sbjct: 182 SSSTSLKVKE-----PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL 233

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 95/255 (37%), Gaps = 40/255 (15%)
Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
           APP F ++P    + L    +F+C   G+    + W ++  ++   PG  Y    V    
Sbjct: 4   APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIR--PGGNYKMTLVENTA 61
Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVA 154
           TL +  V K DAG + C A +VAG  +  A L V      PP  ++    ++ +      
Sbjct: 62  TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE----PPRFIKKLEPSRIVKQDEHT 117
Query: 155 FLPCQAVGSPPPHIRWYKNGNSLPP---------------EDTRINVSSSGSLQIDVLRD 199
              C+  GSP   + WYK+   +                 E   ++V  SG    +    
Sbjct: 118 RYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNA 177
Query: 200 D----------------FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLE 243
                            FR +P       G    LEC   +G P   + W K+ +  +L 
Sbjct: 178 AGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLEC-ELQGTPPFQVSWHKDKR--ELR 234
Query: 244 SSKRVSILGDPWFDS 258
           S K+  I+ + +  S
Sbjct: 235 SGKKYKIMSENFLTS 249

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 79/197 (40%), Gaps = 13/197 (6%)
Query: 9   DEGKYQCYVQNMVGERETKPALLTVHAPPSF--VVRPQDQKVGLNGIASFQCVAEGSPLP 66
           D G Y+C   +  G+ +    +L ++   +F  VV PQ+ K G +  A   C    SP P
Sbjct: 71  DAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGED--AEVVCRVSSSPAP 128
Query: 67  SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA-LSVAGSTTVRAF 125
           +V W     +V     N +  L            + K D G + C   +   G    R  
Sbjct: 129 AVSWLYHNEEVTTISDNRFAMLANNNLQI---LNINKSDEGIYRCEGRVEARGEIDFRDI 185
Query: 126 LQVTSVEDTPPPIVQVGPS-NQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRI 184
           + + +V   PP I     S N T          C+A GSP P I W++NG  +   +  I
Sbjct: 186 IVIVNV---PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYI 242
Query: 185 NVSSSGSLQI-DVLRDD 200
              S+  L + +++  D
Sbjct: 243 LKGSNTELTVRNIINSD 259

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 98/264 (37%), Gaps = 36/264 (13%)
Query: 10  EGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGI-ASFQCVAE-GSPLPS 67
           EG+YQC+ +N  G   +    L V   P +     D  V   G   + QC    G P P 
Sbjct: 89  EGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPV 148
Query: 68  VFWTQEGSQ-VLMFPGNAYGHLHVTQEGTLRIQGVQKE---DAGFFVCSALSVAGSTTVR 123
           +FW     + +      + GH        + +Q +Q +   +A F     +      T++
Sbjct: 149 IFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLK 208
Query: 124 AFLQVTSVEDTPPPIVQVGPSNQTLPLHSV-AFLPCQAVGSPPPHIRWYKNGNSLPPEDT 182
                   E TP  +   G ++  + L  +   L C A G P P I WYK G  LP +  
Sbjct: 209 VLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKA 268
Query: 183 RI----------NVSSSGSLQIDVLRDD------------------FRAEPKDTRVASGE 214
           +           NVS   S +   L  +                  +  EPK+  +A GE
Sbjct: 269 KFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGE 328
Query: 215 TALLECGPPKGQPEPTLHWKKNGQ 238
              L C    G P+PT+ W  NG+
Sbjct: 329 DGRLVCR-ANGNPKPTVQWMVNGE 351

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
           I  V   DEG Y+C  +N+ G R+T    + +HA P ++    D +  +     + CVA 
Sbjct: 261 IQNVDFEDEGTYECEAENIKG-RDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVAS 319
Query: 62  GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
           G P P+V W ++G      P  +   + V+  G LR   +  ED+G + C A +  G+  
Sbjct: 320 GKPRPAVRWLRDGQ-----PLASQNRIEVSG-GELRFSKLVLEDSGMYQCVAENKHGTVY 373
Query: 122 VRAFLQV 128
             A L V
Sbjct: 374 ASAELTV 380

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 28/208 (13%)
Query: 2   ITEVKKSDEGKYQCY----VQNMVGERETKPALLTV-------HAPPSFVVRPQDQKVGL 50
           I + + SD G Y C+    +  +     +K + L++       +AP      P D     
Sbjct: 162 IAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALT 221
Query: 51  NGIASFQCVAEGSPLPSVFWTQ-EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFF 109
             + + +C A G+P+P + W + +GSQ   +         ++ E  L IQ V  ED G +
Sbjct: 222 GQMVTLECFAFGNPVPQIKWRKLDGSQTSKW---------LSSEPLLHIQNVDFEDEGTY 272
Query: 110 VCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR 169
            C A ++ G  T +  + + +  D    I     ++    + S     C A G P P +R
Sbjct: 273 ECEAENIKGRDTYQGRIIIHAQPDWLDVI-----TDTEADIGSDLRWSCVASGKPRPAVR 327
Query: 170 WYKNGNSLPPEDTRINVSSSGSLQIDVL 197
           W ++G  L  ++ RI V S G L+   L
Sbjct: 328 WLRDGQPLASQN-RIEV-SGGELRFSKL 353

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 3/127 (2%)
Query: 5   VKKSDEGKYQCYVQNMV-GERETKPALLTVHAPPSFVVRPQ--DQKVGLNGIASFQCVAE 61
           +KK+DEG Y+C  + +  GE   K   + V+ PP+   R    +    L    +  C A+
Sbjct: 162 IKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDAD 221
Query: 62  GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
           G P P++ WT++G  +     +   H+       L I+ V K D   +VC A + AG   
Sbjct: 222 GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQD 281
Query: 122 VRAFLQV 128
               L+V
Sbjct: 282 ASIHLKV 288

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 89/231 (38%), Gaps = 21/231 (9%)
Query: 9   DEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSV 68
           D G Y+C V    G +      + +     F   P  Q+      A   C    S  P++
Sbjct: 73  DAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTI 132
Query: 69  FWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA-GSTTVRAFLQ 127
            W  +G  V++     +    V     L+I+G++K D G + C    +A G    +    
Sbjct: 133 IWKHKGRDVILKKDVRF---IVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189
Query: 128 VTSVEDTPPPIVQVGPS--NQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL--PPEDTR 183
           + +V    PP VQ   S  N T  L     L C A G P P + W K+G  +    ED  
Sbjct: 190 IVNV----PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDE 245
Query: 184 INVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWK 234
            ++ S  S ++ +   D   E +   +A  +          G+ + ++H K
Sbjct: 246 KHIFSDDSSELTIRNVDKNDEAEYVCIAENKA---------GEQDASIHLK 287

>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 13/135 (9%)
Query: 56  FQCVAEGSPLPSVFWTQEGSQVLMFPG-NAYGHLHVT-QEGTLRIQGVQKEDAGFFVCSA 113
           F+C A G+P PS+ W + G +   F G +  G + +  Q+ +L ++ V   D G + C  
Sbjct: 35  FRCPAAGNPTPSISWLKNGRE---FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV 91
Query: 114 LSVAGSTTVRAFLQVTSVEDTPP-PIVQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWY 171
            +  GS  +R    +  +E +P  PI+Q G P+NQT  L S     C+      PHI+W 
Sbjct: 92  ENKFGS--IRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 149
Query: 172 K----NGNSLPPEDT 182
           K    NG+ + P+ T
Sbjct: 150 KHVEVNGSKVGPDGT 164

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 55  SFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 114
           +F C A GSP P++ W + G   L+     Y       E T+R   +   D G +VC A 
Sbjct: 23  TFSCRASGSPEPAISWFRNGK--LIEENEKYILKGSNTELTVR--NIINSDGGPYVCRAT 78
Query: 115 SVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYK 172
           + AG    +AFLQV       P I+Q+   N+T   +    L C A G P P I W +
Sbjct: 79  NKAGEDEKQAFLQVF----VQPHIIQL--KNETTYENGQVTLVCDAEGEPIPEITWKR 130

>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of Human Myotilin. Northeast Structural Genomics Target Hr3158 Length = 116

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 44/94 (46%)
Query: 37  PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTL 96
           P F+ +PQ +KV        +C     P P +FW +    V         +   T   TL
Sbjct: 16  PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTL 75
Query: 97  RIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS 130
            I+ V K+DAG++  SA++ AG TT    L VT+
Sbjct: 76  LIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA 109

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 13/135 (9%)
Query: 56  FQCVAEGSPLPSVFWTQEGSQVLMFPG-NAYGHLHVT-QEGTLRIQGVQKEDAGFFVCSA 113
           F+C A G+P PS+ W + G +   F G +  G + +  Q+ +L ++ V   D G + C  
Sbjct: 143 FRCPAAGNPTPSISWLKNGRE---FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV 199
Query: 114 LSVAGSTTVRAFLQVTSVEDTPP-PIVQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWY 171
            +  GS  +R    +  +E +P  PI+Q G P+NQT  L S     C+      PHI+W 
Sbjct: 200 ENKFGS--IRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 257
Query: 172 K----NGNSLPPEDT 182
           K    NG+ + P+ T
Sbjct: 258 KHVEVNGSKVGPDGT 272

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 19/168 (11%)
Query: 26  TKPALLTVHAPPSFVVRPQDQKVGLNGI-----ASFQCVAEGSPLPSVFWTQEGSQVLMF 80
           TKP  + V AP  +   P+  +  L+ +       F+C + G+P P++ W + G +    
Sbjct: 4   TKPNRMPV-AP--YWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKE--FK 58
Query: 81  PGNAYGHLHVTQEG-TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP-PI 138
           P +  G   V     ++ +  V   D G + C   +  GS  +    Q+  VE +P  PI
Sbjct: 59  PDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGS--INHTYQLDVVERSPHRPI 116
Query: 139 VQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWYK----NGNSLPPED 181
           +Q G P+N+T+ L S     C+    P PHI+W K    NG+ + P++
Sbjct: 117 LQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDN 164

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 19/168 (11%)
Query: 26  TKPALLTVHAPPSFVVRPQDQKVGLNGI-----ASFQCVAEGSPLPSVFWTQEGSQVLMF 80
           TKP  + V AP  +   P+  +  L+ +       F+C + G+P P++ W + G +    
Sbjct: 5   TKPNRMPV-AP--YWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKE--FK 59
Query: 81  PGNAYGHLHVTQEG-TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP-PI 138
           P +  G   V     ++ +  V   D G + C   +  GS  +    Q+  VE +P  PI
Sbjct: 60  PDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGS--INHTYQLDVVERSPHRPI 117
Query: 139 VQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWYK----NGNSLPPED 181
           +Q G P+N+T+ L S     C+    P PHI+W K    NG+ + P++
Sbjct: 118 LQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDN 165

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 19/168 (11%)
Query: 26  TKPALLTVHAPPSFVVRPQDQKVGLNGI-----ASFQCVAEGSPLPSVFWTQEGSQVLMF 80
           TKP  + V AP  +   P+  +  L+ +       F+C + G+P P++ W + G +    
Sbjct: 4   TKPNRMPV-AP--YWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPNPTLRWLKNGKE--FK 58
Query: 81  PGNAYGHLHVTQEG-TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP-PI 138
           P +  G   V     ++ +  V   D G + C   +  GS  +    Q+  VE +P  PI
Sbjct: 59  PDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGS--INHTYQLDVVERSPHRPI 116
Query: 139 VQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWYK----NGNSLPPED 181
           +Q G P+N+T+ L S     C+    P PHI+W K    NG+ + P++
Sbjct: 117 LQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDN 164

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 9   DEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNG-IASFQCVAEGSPLPS 67
           DEG Y C V N VG+ +     LTV + P +  +P+   V   G   +  C   G P P+
Sbjct: 281 DEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPN 340
Query: 68  VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 127
           V W+     +      + G   VT  G L I+GV+  D G++ C A +  G       +Q
Sbjct: 341 VVWSHNAKPL------SGGRATVTDSG-LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 393
Query: 128 VT 129
           V 
Sbjct: 394 VN 395

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 14/141 (9%)
Query: 1   MITEVKKS---DEGKYQCYVQNM-VGERETKPALLTV--HAPPSFVVRPQDQKVGLNGIA 54
           +I E+K +   D+G Y C  Q+    +R      LTV     P+     ++Q   +    
Sbjct: 625 LIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESI 684
Query: 55  SFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT--LRIQGVQKEDAGFFVCS 112
              C A G+P P + W ++   ++   G       V ++G   L I+ V+KED G + C 
Sbjct: 685 EVSCTASGNPPPQIMWFKDNETLVEDSG------IVLKDGNRNLTIRRVRKEDEGLYTCQ 738
Query: 113 ALSVAGSTTVRAFLQVTSVED 133
           A SV G   V AF  +   ++
Sbjct: 739 ACSVLGCAKVEAFFIIEGAQE 759

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 82/206 (39%), Gaps = 27/206 (13%)
Query: 13  YQCYVQNMVGERETKPALLTVHAP--PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFW 70
           Y+C   N VG  E    +++ H    P   ++P  Q      + S  C A+ S   ++ W
Sbjct: 528 YKCEAVNKVGRGE---RVISFHVTRGPEITLQPDMQPTEQESV-SLWCTADRSTFENLTW 583
Query: 71  TQEGSQVL-----------------MFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCS 112
            + G Q L                 ++  NA    + T +   + ++    +D G +VC 
Sbjct: 584 YKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCL 643
Query: 113 ALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYK 172
           A             Q+T +E   P I      NQT  +     + C A G+PPP I W+K
Sbjct: 644 AQDRKTKKRHCVVRQLTVLERVAPTITG-NLENQTTSIGESIEVSCTASGNPPPQIMWFK 702
Query: 173 NGNSLPPEDTRINVSSSGSLQIDVLR 198
           +  +L  ED+ I V   G+  + + R
Sbjct: 703 DNETL-VEDSGI-VLKDGNRNLTIRR 726

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 7   KSDEGKYQCYVQ-NMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIA------SFQCV 59
           KSDEG Y+C  +    GE + +  ++ V+ PP+ +  PQ      N  A      +F C 
Sbjct: 66  KSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPA-ISMPQK---SFNATAERGEEMTFSCR 121
Query: 60  AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
           A GSP P++ W + G   L+     Y       E T+R   +   D G +VC A + AG 
Sbjct: 122 ASGSPEPAISWFRNGK--LIEENEKYILKGSNTELTVR--NIINSDGGPYVCRATNKAGE 177
Query: 120 TTVRAFLQV 128
              +AFLQV
Sbjct: 178 DEKQAFLQV 186

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 64/164 (39%), Gaps = 11/164 (6%)
Query: 40  VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQ 99
           VV PQ+ K G +  A   C    SP P+V W     +V     N +  L           
Sbjct: 8   VVSPQEFKQGED--AEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI---L 62
Query: 100 GVQKEDAGFFVCSA-LSVAGSTTVRAFLQVTSVEDTPPPIVQVGPS-NQTLPLHSVAFLP 157
            + K D G + C   +   G    R  + + +V   PP I     S N T          
Sbjct: 63  NINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV---PPAISMPQKSFNATAERGEEMTFS 119
Query: 158 CQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
           C+A GSP P I W++NG  +   +  I   S+  L + +++  D
Sbjct: 120 CRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSD 163

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 7/127 (5%)
Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
           I  V   DEG Y+C  +N  G R+T    + V A P ++    D +  +     + C A 
Sbjct: 260 IPSVSFEDEGTYECEAENSKG-RDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGCAAA 318
Query: 62  GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
           G P P+V W + G      P  +   + V   G LR   +  ED+G + C A +  G+  
Sbjct: 319 GKPRPTVRWLRNGE-----PLASQNRVEVLA-GDLRFSKLSLEDSGMYQCVAENKHGTIY 372
Query: 122 VRAFLQV 128
             A L V
Sbjct: 373 ASAELAV 379

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 101/289 (34%), Gaps = 36/289 (12%)
Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
           ++   K  D G YQC   N VG   ++ A+L       F    +D      G        
Sbjct: 64  IMNPTKAQDAGVYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLPCN 123
Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
             +  P + +    ++   F      H      G L I      D G + C A S    +
Sbjct: 124 PPAHYPGLSYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMDFS 183
Query: 121 TVRAFLQVT----SVEDT---PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKN 173
           T   F +      + EDT    P I    P+     +     L C A G+P P I+W K 
Sbjct: 184 TKSVFSKFAQLNLAAEDTRLFAPSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRKV 243
Query: 174 GNSLPPEDT---------RINVSSSGSLQIDVLRDDFR----------AEPK------DT 208
             SL P+ T          ++    G+ + +      R          A+P+      DT
Sbjct: 244 DGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDT 303
Query: 209 RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSIL-GDPWF 256
               G      C    G+P PT+ W +NG+   L S  RV +L GD  F
Sbjct: 304 EADIGSNLRWGCA-AAGKPRPTVRWLRNGE--PLASQNRVEVLAGDLRF 349

>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex Length = 195

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 14/125 (11%)
Query: 2   ITEVKKSDEGKYQCYVQNMVGERE--TKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCV 59
           IT ++ SD G+YQC V   +G +   ++P  + +   P F+  P+D+ V  N   +  C 
Sbjct: 72  ITSLQLSDTGQYQCLV--FLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQ 129
Query: 60  AEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
           A+G P P  + W Q+   +   PG+         + +L + G+ K  +  F C A +  G
Sbjct: 130 AQGPPEPVDLLWLQDAVPLATAPGHG-------PQRSLHVPGLNKTSS--FSCEAHNAKG 180
Query: 119 STTVR 123
            TT R
Sbjct: 181 VTTSR 185

>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homo1 Length = 118

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 34  HAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE 93
             PP     P +Q V ++G     CVA GSP+P++ W ++G  VL+   ++   +   + 
Sbjct: 6   SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDG--VLVSTQDS--RIKQLEN 61
Query: 94  GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
           G L+I+  +  D G + C A + +G  T  A+++V
Sbjct: 62  GVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEV 96

>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homo1 Length = 118

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQID 195
           PP+++ GP NQT+ +     L C A GSP P I W K+G  +  +D+RI    +G LQI 
Sbjct: 8   PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIR 67
Query: 196 V--LRDDFR-----AEPKDTRVASGETALLECGPPKGQPEPT 230
              L D  R     + P      S    + E G P   P PT
Sbjct: 68  YAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPT 109

>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 103/271 (38%), Gaps = 54/271 (19%)
Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTV-HAPPSFVVRPQDQ--KVGLNGIASFQC 58
           +  V ++D G Y+C +QN +    + P +L V + P    + P     + G+N   S  C
Sbjct: 346 LLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVN--LSLSC 403
Query: 59  VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
            A  +P     W        +  GN   H   TQE  L I  + ++++G + C A + A 
Sbjct: 404 HAASNPPAQYSW--------LIDGNIQQH---TQE--LFISNITEKNSGLYTCQANNSAS 450
Query: 119 STTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLP 178
             +      +T   + P P +    S       +VAF  C+       ++ W+ NG SL 
Sbjct: 451 GHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFT-CEPEAQNTTYL-WWVNGQSL- 507
Query: 179 PEDTRINVSSSG-SLQI-DVLRDDFRA------------------------------EPK 206
           P   R+ +S+   +L + +V R+D RA                               P 
Sbjct: 508 PVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPP 567
Query: 207 DTRVASGETALLECGPPKGQPEPTLHWKKNG 237
           D+   SG    L C      P P   W+ NG
Sbjct: 568 DSSYLSGANLNLSCH-SASNPSPQYSWRING 597

>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure Length = 424

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSV- 153
           TL I GV + D G + C+A S   +     F++V        P V  G   ++L   +V 
Sbjct: 161 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE-----KPFVAFGSGMESLVEATVG 215
Query: 154 --AFLPCQAVGSPPPHIRWYKNGNSLPPEDT 182
               +P + +G PPP I+WYKNG  L    T
Sbjct: 216 ERVRIPAKYLGYPPPEIKWYKNGIPLESNHT 246

>pdb|1KTK|E Chain E, Complex Of Streptococcal Pyrogenic Enterotoxin C (Spec) With A Human T Cell Receptor Beta Chain (Vbeta2.1) Length = 247

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL----QVTSVEDT---PPPIVQVGPSNQT 147
           TL +     ED+ F++CSAL+ +GS+T   +     ++T +ED    PP +    PS   
Sbjct: 78  TLTVTSAHPEDSSFYICSALAGSGSSTDTQYFGPGTRLTVLEDLKNFPPEVAVFEPSEAE 137
Query: 148 LPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
           +     A L C A G  P H+   W+ NG  +
Sbjct: 138 ISHTQKATLVCLATGFYPDHVELSWWVNGKEV 169

>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 21/154 (13%)
Query: 33  VHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
           +HA P+F                F+C A G+P+P++ W + G +         G+    Q
Sbjct: 28  LHAVPAF------------NTVKFRCPAGGNPMPTMRWLKNGKEFKQ-EHRIGGYKVRNQ 74
Query: 93  EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP-PIVQVG-PSNQTLPL 150
             +L ++ V   D G + C   +  GS      L V  VE +P  PI+Q G P+N +  +
Sbjct: 75  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV--VERSPHRPILQAGLPANASTVV 132
Query: 151 HSVAFLPCQAVGSPPPHIRWY----KNGNSLPPE 180
                  C+      PHI+W     KNG+   P+
Sbjct: 133 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPD 166

>pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 27/144 (18%)
Query: 2   ITEVKKSDEGKYQCYVQNM---------------VGERETKPALLTVHAPPSFVVRPQDQ 46
           I  V+ SD+G Y C+V +                + ER TKP       P   VV+ +D 
Sbjct: 70  IANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPY------PADIVVQFKDV 123
Query: 47  KVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDA 106
              +    + +C A G+P+P + W +     ++ P  +   +  T    L+I  +Q ED 
Sbjct: 124 YALMGQNVTLECFALGNPVPDIRWRK-----VLEPMPSTAEIS-TSGAVLKIFNIQLEDE 177
Query: 107 GFFVCSALSVAGSTTVRAFLQVTS 130
           G + C A ++ G    +A + V +
Sbjct: 178 GIYECEAENIRGKDKHQARIYVQA 201

>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 9/131 (6%)
Query: 56  FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
           F+C A G+P+P++ W + G +         G+    Q  +L ++ V   D G + C   +
Sbjct: 31  FRCPAGGNPMPTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 89
Query: 116 VAGSTTVRAFLQVTSVEDTPP-PIVQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWY-- 171
             GS      L V  VE +P  PI+Q G P+N +  +       C+      PHI+W   
Sbjct: 90  EYGSINHTYHLDV--VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKH 147
Query: 172 --KNGNSLPPE 180
             KNG+   P+
Sbjct: 148 VEKNGSKYGPD 158

>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 9/131 (6%)
Query: 56  FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
           F+C A G+P+P++ W + G +         G+    Q  +L ++ V   D G + C   +
Sbjct: 30  FRCPAGGNPMPTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 88
Query: 116 VAGSTTVRAFLQVTSVEDTPP-PIVQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWY-- 171
             GS      L V  VE +P  PI+Q G P+N +  +       C+      PHI+W   
Sbjct: 89  EYGSINHTYHLDV--VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKH 146
Query: 172 --KNGNSLPPE 180
             KNG+   P+
Sbjct: 147 VEKNGSKYGPD 157

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 24/155 (15%)
Query: 40  VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAY--GHLHVT-QEG-- 94
           +++ +++    NG  +  C AEG P+P + W +         G+    G + V  Q G  
Sbjct: 4   IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTL------ 148
           +L I+ V+  D+G + C A S  G      +L    +E  P  I     SNQT+      
Sbjct: 64  SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD---IEYAPKFI-----SNQTIYYSWEG 115
Query: 149 -PLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT 182
            P++    + C    +PP  I W ++   LP ++T
Sbjct: 116 NPIN----ISCDVKSNPPASIHWRRDKLVLPAKNT 146

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 25/168 (14%)
Query: 40  VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAY--GHLHVT-QEG-- 94
           +++ +++    NG  +  C AEG P+P + W +         G+    G + V  Q G  
Sbjct: 4   IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTL------ 148
           +L I+ V+  D+G + C A S  G      +L    +E  P  I     SNQT+      
Sbjct: 64  SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL---DIEYAPKFI-----SNQTIYYSWEG 115
Query: 149 -PLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED-TRINVSSSGSLQI 194
            P++    + C    +PP  I W ++   LP ++ T +   S+G   I
Sbjct: 116 NPIN----ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI 159

>pdb|3HG1|E Chain E, Germline-Governed Recognition Of A Cancer Epitope By An Immunodominant Human T Cell Receptor Length = 244

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 32/171 (18%)
Query: 32  TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE----GSQVLMF------- 80
           T+H  P+ +V+P      +    S +C  EG+  P+++W ++    G Q+L +       
Sbjct: 3   TIHQWPATLVQP------VGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQI 56
Query: 81  ----PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL----QVTSVE 132
               P N        ++  L  + +   D+GF++C A S  G  T   F     ++T +E
Sbjct: 57  SSEVPQNLSASRPQDRQFILSSKKLLLSDSGFYLC-AWSETGLGTGELFFGEGSRLTVLE 115
Query: 133 DT----PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
           D     PP +    PS   +     A L C A G  P H+   W+ NG  +
Sbjct: 116 DLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 166

>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 56  FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
           F+C A G+P+P++ W + G +         G+    Q  +L ++ V   D G + C   +
Sbjct: 31  FRCPAGGNPMPTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 89
Query: 116 VAGSTTVRAFLQVTSVEDTPP-PIVQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWY-- 171
             GS      L V  VE  P  PI+Q G P+N +  +       C+      PHI+W   
Sbjct: 90  EYGSINHTYHLDV--VERWPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKH 147
Query: 172 --KNGNSLPPE 180
             KNG+   P+
Sbjct: 148 VEKNGSKYGPD 158

>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma Translocation Protein 1 Length = 218

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 75/211 (35%), Gaps = 38/211 (18%)
Query: 41  VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQG 100
           V P+ + V         C A G P     W +   ++    GN            L    
Sbjct: 23  VNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIP--NGNT---------SELIFNA 71
Query: 101 VQKEDAGFFVCSALSVAGSTTVRAFLQVTSVE--DTPPPI-------------VQVGPSN 145
           V  +DAGF+VC       +     F Q + ++  D P                + V P++
Sbjct: 72  VHVKDAGFYVCRV----NNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTS 127
Query: 146 QTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTR------INVSSSGSLQIDVLRD 199
           Q L   S   L C AVGSP PH +W+KN   L  E  +      +++   G+    V  D
Sbjct: 128 QKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYND 187
Query: 200 DFRAEPKDTRVASGETALLECGPPKGQPEPT 230
               + K   +   E  L   G P  + + T
Sbjct: 188 RDSQDSKKVEIIIDE--LNNLGHPDNKEQTT 216

>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 7/130 (5%)
Query: 56  FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
           F+C A G+P+P++ W + G +         G+    Q  +L ++ V   D G + C   +
Sbjct: 39  FRCPAGGNPMPTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 97
Query: 116 VAGSTTVRAFLQVTSVEDTPPPIVQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWY--- 171
             GS      L V        PI+Q G P+N +  +       C+      PHI+W    
Sbjct: 98  EYGSINHTYHLDVVE-RSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 156
Query: 172 -KNGNSLPPE 180
            KNG+   P+
Sbjct: 157 EKNGSKYGPD 166

>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 7/130 (5%)
Query: 56  FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
           F+C A G+P+P++ W + G +         G+    Q  +L ++ V   D G + C   +
Sbjct: 29  FRCPAGGNPMPTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 87
Query: 116 VAGSTTVRAFLQVTSVEDTPPPIVQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWY--- 171
             GS      L V        PI+Q G P+N +  +       C+      PHI+W    
Sbjct: 88  EYGSINHTYHLDVVE-RSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 146
Query: 172 -KNGNSLPPE 180
            KNG+   P+
Sbjct: 147 EKNGSKYGPD 156

>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 7/130 (5%)
Query: 56  FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
           F+C A G+P+P++ W + G +         G+    Q  +L ++ V   D G + C   +
Sbjct: 31  FRCPAGGNPMPTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 89
Query: 116 VAGSTTVRAFLQVTSVEDTPPPIVQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWY--- 171
             GS      L V        PI+Q G P+N +  +       C+      PHI+W    
Sbjct: 90  EYGSINHTYHLDVVE-RSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 148
Query: 172 -KNGNSLPPE 180
            KNG+   P+
Sbjct: 149 EKNGSKYGPD 158

>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2 Length = 182

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 2   ITEVKKSDEGKYQCYVQNMVGERE-TKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
           +  V++SD G+Y C V++  GE E ++P  LTV   P F V P+D  V  N      C A
Sbjct: 64  LKSVERSDAGRYWCQVEDG-GETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEA 122
Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
            G P P       G+  +  P  +   L+VT        GV +     F C A ++ G  
Sbjct: 123 VGPPEPVTIVWWRGTTKIGGPAPSPSVLNVT--------GVTQSTX--FSCEAHNLKGLA 172
Query: 121 TVR 123
           + R
Sbjct: 173 SSR 175

>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 31  LTV--HAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHL 88
           LTV     P+     ++Q   +       C A G+P P + W ++   ++   G      
Sbjct: 3   LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSG------ 56
Query: 89  HVTQEGT--LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVED 133
            V ++G   L I+ V+KED G + C A SV G   V AF  +   ++
Sbjct: 57  IVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQE 103

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 56  FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
           F C A+G P P++ W      ++    N  G L V  +GTL ++  Q +D G ++C A +
Sbjct: 405 FVCRADGDPPPAILWLSPRKHLVSAKSN--GRLTVFPDGTLEVRYAQVQDNGTYLCIAAN 462
Query: 116 VAGSTTVRAFLQVTS 130
             G+ ++ A L V S
Sbjct: 463 AGGNDSMPAHLHVRS 477

>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Query: 33  VHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
           + + P  V   QD  V  + +A F   A G P P+  WT++G  +    G  Y       
Sbjct: 3   ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQ--GGKYKLSEDKG 60
Query: 93  EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSV 131
              L I      D+G + C+  + AGS +    L + ++
Sbjct: 61  GFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKAI 99

>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r Mutant Complex Length = 109

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQV-----LMFPGNAYGHLH 89
           +PP F+ RP+  +V     A  +CV  G P P V W + G Q+     L FP +   H  
Sbjct: 13  SPPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEH-- 70
Query: 90  VTQEGTLRIQGVQKEDAGFFVCSA 113
                 L +      DAG +VC A
Sbjct: 71  -----GLLLTAALPTDAGVYVCRA 89

>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex Length = 230

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 56  FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
           F+C A G+P P+  W + G +         G+    Q  +L  + V   D G + C   +
Sbjct: 38  FRCPAGGNPXPTXRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVEN 96
Query: 116 VAGSTTVRAFLQVTSVEDTPP-PIVQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWY-- 171
             GS      L V  VE +P  PI+Q G P+N +  +       C+      PHI+W   
Sbjct: 97  EYGSINHTYHLDV--VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKH 154
Query: 172 --KNGNSLPPE 180
             KNG+   P+
Sbjct: 155 VEKNGSKYGPD 165

>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor Receptor 2 In Complex With Fgf1 Length = 216

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 56  FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
           F+C A G+P P+  W + G +         G+    Q  +L  + V   D G + C   +
Sbjct: 31  FRCPAGGNPXPTXRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVEN 89
Query: 116 VAGSTTVRAFLQVTSVEDTPP-PIVQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWY-- 171
             GS      L V  VE +P  PI+Q G P+N +  +       C+      PHI+W   
Sbjct: 90  EYGSINHTYHLDV--VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKH 147
Query: 172 --KNGNSLPPE 180
             KNG+   P+
Sbjct: 148 VEKNGSKYGPD 158

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 63/160 (39%), Gaps = 19/160 (11%)
Query: 37  PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLM---FPGNAYGHLHVTQE 93
           P      +D    L   A   C   G PLP + W + G +++    +  ++ G  H    
Sbjct: 8   PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTH---- 63
Query: 94  GTLRIQGVQKEDAGFFVCSALSVAG--STTVRAFLQVTSVEDTPPPIVQ--VGPSNQTLP 149
            TL +   ++ED G + C A +  G   T+ +  LQ T       P+ +   G    TL 
Sbjct: 64  -TLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLR 122
Query: 150 LHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS 189
           LH         +G P P + W+ +G  L      I + ++
Sbjct: 123 LH------VMYIGRPVPAMTWF-HGQKLLQNSENITIENT 155

>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1 Length = 99

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 13/101 (12%)
Query: 34  HAPPSFVVRPQDQKV--GLNGIASFQCVAEGSPLPSVFWTQEGSQVL----MFPGNAYGH 87
            APP+F V   DQ V  G + I S +   +G P P V W +    V      F   A G 
Sbjct: 3   KAPPTFKVSLMDQSVREGQDVIMSIR--VQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGG 60
Query: 88  LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
           L       LRI   ++ DAGF+ C A++  G+    A L+V
Sbjct: 61  LC-----RLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96

>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 117

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
           PP  V  P D  V     A+  C AEG P P++ W + G +V     +   H  +   G+
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 96  ---LRIQGVQKE--DAGFFVCSALSVAGSTT 121
              LRI   +K   D G +VC A +  G   
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAV 99

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH--APPSFVVRPQDQKVGLNGIASFQCV 59
           I  V K++ G+Y     N  G+  +   LL     APP+FV R Q   V        Q  
Sbjct: 67  IPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVR 126
Query: 60  AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSALSV 116
             G P P V + ++G+++      +     ++QEG   +L I     ED+G +  +A + 
Sbjct: 127 VTGIPTPVVKFYRDGAEI-----QSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181
Query: 117 AGSTTVRAFLQV 128
            G  T  A L V
Sbjct: 182 VGRATSTAELLV 193

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH--APPSFVVRPQDQKVGLNGIASFQCV 59
           I  V K++ G+Y     N  G+  +   LL     APP+FV R Q   V        Q  
Sbjct: 67  IPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVR 126
Query: 60  AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSALSV 116
             G P P V + ++G+++      +     ++QEG   +L I     ED+G +  +A + 
Sbjct: 127 VTGIPTPVVKFYRDGAEI-----QSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181
Query: 117 AGSTTVRAFLQV 128
            G  T  A L V
Sbjct: 182 VGRATSTAELLV 193

>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine- Rich Repeat-Containing Protein 4 Length = 103

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 37  PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTL 96
           P  +  P+D  +    +A  +C     P+ SV W      VL    + +  + V  +GTL
Sbjct: 8   PFIMDAPRDLNISEGRMAELKC--RTPPMSSVKWLLPNGTVLSH-ASRHPRISVLNDGTL 64
Query: 97  RIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS 130
               V   D G + C   +VAG++   A+L V+S
Sbjct: 65  NFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSS 98

>pdb|3O4L|E Chain E, Genetic And Structural Basis For Selection Of A Ubiquitous T Cell Receptor Deployed In Epstein-Barr Virus Length = 245

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 95  TLRIQGVQKEDAGFFVCSALSVAGS-TTVRAFLQVTSVEDT----PPPIVQVGPSNQTLP 149
           TL +     ED+ F++CSA    G+  T  +  ++T VED     PP +    PS   + 
Sbjct: 78  TLTVTSAHPEDSSFYICSARDGTGNGYTFGSGTRLTVVEDLNKVFPPEVAVFEPSEAEIS 137
Query: 150 LHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
               A L C A G  P H+   W+ NG  +
Sbjct: 138 HTQKATLVCLATGFYPDHVELSWWVNGKEV 167

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 33/151 (21%)
Query: 3   TEVKKSDEGKYQCY---------VQNMVGERETKPALLTV--------HAPPSFVVRPQD 45
           T+++ S + KY  +         + N    R+ +P   ++         A P F+V+P  
Sbjct: 326 TKIRDSIKTKYDAWPEPLPPLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYG 385
Query: 46  QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLM-------FPGNAYGHLHVTQEGTLRI 98
            +VG    A+F C    S  P V W ++  ++         + GN YG         L I
Sbjct: 386 TEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG---------LTI 436
Query: 99  QGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
             V+ +D G +   A +  G+     FL VT
Sbjct: 437 NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT 467

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 37  PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFW-TQEGSQVLMFPGNAYGHLHVTQEGT 95
           P  V  P D  V     A  +C   G+ + SV W T  G+  LM  G+    + V  +GT
Sbjct: 313 PVIVEPPTDLNVTEGMAAELKC-RTGTSMTSVNWLTPNGT--LMTHGSYRVRISVLHDGT 369
Query: 96  LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
           L    V  +D G + C   + AG+TT  A L V
Sbjct: 370 LNFTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 33/151 (21%)
Query: 3   TEVKKSDEGKYQCY---------VQNMVGERETKPALLTV--------HAPPSFVVRPQD 45
           T+++ S + KY  +         + N    R+ +P   ++         A P F+V+P  
Sbjct: 432 TKIRDSIKTKYDAWPEPLPPLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYG 491
Query: 46  QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLM-------FPGNAYGHLHVTQEGTLRI 98
            +VG    A+F C    S  P V W ++  ++         + GN YG         L I
Sbjct: 492 TEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG---------LTI 542
Query: 99  QGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
             V+ +D G +   A +  G+     FL VT
Sbjct: 543 NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT 573

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 37  PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTL 96
           P  V  P D  V     A  +C A  S L SV W      V M  G     + V  +GTL
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRASTS-LTSVSWITPNGTV-MTHGAYKVRIAVLSDGTL 399
Query: 97  RIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
               V  +D G + C   +  G+TT  A L VT
Sbjct: 400 NFTNVTVQDTGMYTCMVSNSVGNTTASATLNVT 432

>pdb|1YMM|E Chain E, TcrHLA-Dr2bMBP-Peptide Complex Length = 249

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 94  GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL----QVTSVEDT----PPPIVQVGPSN 145
            TL +     ED+ F++CSA  +        F     ++T +ED     PP +    PS 
Sbjct: 77  STLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSE 136
Query: 146 QTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
             +     A L C A G  P H+   W+ NG  +
Sbjct: 137 AEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 170

>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 34  HAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE 93
           H  P F     D +V     A F C  EG P P V W ++ + V     + +  +   +E
Sbjct: 39  HVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPV---KESRHFQIDYDEE 95
Query: 94  G--TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSV 131
           G  +L I  V  +D   + C A++  G  T  A L V ++
Sbjct: 96  GNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM 135

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	292
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-65
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	6e-54
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-44
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-34
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-64
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-60
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	7e-52
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-48
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-43
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-28
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-60
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-50
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-49
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-47
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-46
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-45
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-36
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-30
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-27
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	7e-57
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-44
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-38
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-22
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	6e-56
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-47
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-31
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	9e-55
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	5e-53
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-35
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	8e-54
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-47
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-40
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-33
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	6e-24
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-53
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	9e-47
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-33
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-31
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-23
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	4e-53
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	4e-48
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-35
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-34
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-22
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-52
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-48
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-32
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	6e-24
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-06
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-52
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-41
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-40
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-36
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-32
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-25
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	9e-52
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-41
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-37
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-35
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-25
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	6e-49
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	9e-44
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	9e-32
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-29
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-19
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-47
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	8e-40
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-30
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	7e-23
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	9e-44
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-31
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-10
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-43
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	8e-38
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-37
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-34
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-31
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-30
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-26
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	8e-13
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-05
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-43
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-34
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-07
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	3e-43
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	8e-29
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-24
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-42
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-36
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-29
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-07
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-41
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-24
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	5e-07
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	4e-41
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-30
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-22
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-40
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	8e-33
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-23
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-40
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-33
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-31
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-40
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-35
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-35
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-32
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-23
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-14
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	6e-05
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	7e-40
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-38
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	5e-26
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	9e-40
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	5e-30
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-28
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-22
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-14
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	1e-39
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	3e-37
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	6e-26
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	7e-09
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	3e-39
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-33
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	6e-28
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-14
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	5e-39
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-28
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-28
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-08
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	9e-38
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-30
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-24
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-37
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-30
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	8e-27
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-12
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-37
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-34
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-20
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-07
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	8e-37
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	8e-29
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	4e-20
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	4e-13
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	4e-05
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-36
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-33
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-18
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-36
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	4e-36
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-21
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-07
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-35
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	5e-22
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-19
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	9e-10
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-34
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-34
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	9e-21
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-34
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-34
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	4e-19
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-08
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-34
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-29
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	6e-29
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	3e-11
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-34
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-30
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	7e-22
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	6e-08
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	3e-04
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	7e-34
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-27
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-09
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-33
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	4e-32
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-21
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	5e-15
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	6e-33
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	8e-32
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	6e-20
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-04
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-32
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-24
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-21
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-32
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	4e-28
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	8e-25
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-32
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-31
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-19
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-31
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	6e-31
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	3e-10
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	5e-31
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	6e-28
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	3e-16
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-30
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	5e-27
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	3e-07
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-30
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	7e-30
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-16
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	9e-11
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	7e-30
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	6e-18
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-17
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-27
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-21
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-17
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-06
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	6e-27
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-20
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	6e-19
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	7e-16
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-14
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-07
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-26
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	8e-21
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-07
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	5e-26
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	9e-21
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	8e-17
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-04
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-25
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	3e-20
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-07
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	4e-04
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	1e-25
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	4e-18
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	4e-15
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-25
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	3e-20
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-08
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	5e-08
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	3e-25
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-12
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-06
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	5e-25
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-17
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-06
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-04
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	6e-25
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	5e-17
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	5e-14
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-24
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	8e-15
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-07
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	4e-07
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-24
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-21
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-18
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-24
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-15
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	6e-10
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-05
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	5e-24
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	6e-23
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	4e-04
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	6e-24
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-17
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-23
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	1e-11
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	1e-08
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	5e-08
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	3e-23
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	9e-08
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	5e-07
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-22
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-21
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-18
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-15
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-07
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-05
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	4e-22
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	1e-12
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	3e-07
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	1e-04
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	1e-21
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	4e-14
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	1e-08
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	3e-07
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	2e-21
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	2e-10
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	7e-08
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	1e-05
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-21
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-11
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	6e-09
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	4e-21
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	4e-11
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-07
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	6e-05
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	4e-21
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	7e-13
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-08
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	6e-07
2ens_A	96	Advanced glycosylation END product-specific recept	5e-21
2ens_A	96	Advanced glycosylation END product-specific recept	1e-12
2ens_A	96	Advanced glycosylation END product-specific recept	2e-09
2ens_A	96	Advanced glycosylation END product-specific recept	5e-05
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	6e-21
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	7e-11
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	1e-04
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-04
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	8e-21
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	6e-17
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-08
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	8e-21
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	6e-18
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	5e-09
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	8e-21
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	2e-13
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	1e-07
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-20
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-20
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-13
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-20
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	4e-13
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	4e-07
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	1e-04
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-20
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	6e-13
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	5e-08
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-05
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	3e-20
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	5e-12
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	5e-07
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	3e-06
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	8e-20
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	4e-18
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	5e-08
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	5e-05
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	9e-20
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	4e-18
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-13
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-19
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	8e-11
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-07
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-05
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	6e-19
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	9e-14
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	1e-18
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	5e-10
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	5e-06
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-04
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	7e-18
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	1e-09
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	3e-06
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	6e-04
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	1e-17
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	2e-08
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	3e-05
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-17
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	9e-15
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	3e-17
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-12
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-07
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-04
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	5e-17
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-08
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	4e-08
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	5e-04
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	7e-17
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-15
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	5e-05
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	8e-17
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	9e-09
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-07
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	1e-16
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	5e-09
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	8e-08
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-05
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-16
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	7e-09
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	3e-16
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	1e-10
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	3e-05
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	5e-04
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	4e-16
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-10
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	5e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	8e-16
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	3e-10
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	4e-08
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	3e-04
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	1e-15
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	3e-07
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	5e-05
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	5e-04
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-15
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	8e-15
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-13
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-15
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-07
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	3e-04
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	8e-04
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-15
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	9e-12
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	6e-08
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	5e-07
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	3e-15
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	3e-09
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	6e-06
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-15
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-07
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-06
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	5e-15
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-08
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	5e-08
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	6e-04
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	6e-15
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-13
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	4e-12
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-06
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	8e-15
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	2e-11
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	1e-06
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	2e-04
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	9e-15
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	3e-11
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-07
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	1e-14
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	4e-07
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	3e-14
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	4e-07
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	2e-05
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-14
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-07
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-06
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-04
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	4e-14
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	4e-08
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	6e-07
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	1e-13
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	3e-05
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	1e-13
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	1e-06
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	4e-04
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-13
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	1e-06
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-04
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-13
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	3e-06
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	4e-05
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	7e-05
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-13
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-07
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-06
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	4e-13
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	4e-13
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	1e-11
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	5e-13
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-08
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-04
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	5e-13
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	2e-07
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	5e-13
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	5e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-04
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	8e-13
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	1e-11
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	3e-10
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	1e-12
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	3e-07
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	6e-07
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	2e-12
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	3e-09
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-12
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	7e-08
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-05
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	1e-11
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	3e-04
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	1e-11
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	7e-07
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	8e-07
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	1e-11
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	1e-07
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	6e-05
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-11
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-06
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-04
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	4e-04
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	4e-11
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	4e-11
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	8e-11
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	5e-11
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	8e-10
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	7e-04
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	7e-11
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	8e-08
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	5e-05
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	1e-10
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	2e-08
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	1e-10
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	2e-10
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	5e-04
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	3e-10
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	2e-07
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	7e-05
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	2e-04
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	3e-10
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	5e-06
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	5e-05
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	3e-10
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	6e-07
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	6e-07
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	4e-10
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	8e-10
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	1e-09
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	3e-05
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-09
1he7_A	126	High affinity nerve growth factor receptor; transf	1e-08
1he7_A	126	High affinity nerve growth factor receptor; transf	7e-06
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	2e-08
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	9e-05
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	2e-04
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	3e-08
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	3e-08
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	1e-07
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	9e-06
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	2e-07
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	6e-04
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	2e-07
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	7e-06
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	4e-07
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	7e-07
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	6e-04
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	9e-07
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	4e-04
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	1e-06
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	6e-06
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	2e-06
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	3e-06
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	9e-05
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	4e-06
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	4e-06
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	4e-06
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	2e-05
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	5e-06
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	6e-06
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	2e-04
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	1e-05
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	1e-05
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	2e-05
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	3e-05
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	1e-04
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	3e-05
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	5e-05
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	5e-05
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	6e-05
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	6e-05
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	2e-04
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	1e-04
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	1e-04
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	1e-04
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	2e-04
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	2e-04
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	2e-04
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	2e-04
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	2e-04
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	3e-04
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	5e-04
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	5e-04
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	6e-04
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	7e-04

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  208 bits (531), Expect = 4e-65
 Identities = 64/285 (22%), Positives = 103/285 (36%), Gaps = 37/285 (12%)

Query: 1   MITEVKKSDEGKYQCYVQ-NMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCV 59
           + +   K DEG YQC       G   ++ A + V  P  F+ + +     +      +C 
Sbjct: 85  LHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCE 144

Query: 60  AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
             G P+P++ W +    +   PG+    + V   G L+I  +Q  D+G + CSA + A +
Sbjct: 145 VIGDPMPTIHWQKNQQDLNPIPGD--SRVVVLPSGALQISRLQPGDSGVYRCSARNPAST 202

Query: 120 TTVR-AFLQVTSV-EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
            T   A +++ S             PSN        A L C   G PPP   W +    +
Sbjct: 203 RTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVI 262

Query: 178 PPEDTRINVSSSGSLQI-DVLRDD----------------------------FRAEPKDT 208
                + ++    +L I +V  DD                            F   P + 
Sbjct: 263 QLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNL 322

Query: 209 RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
                     EC    G+P PT++W KNG    +  S    I+G 
Sbjct: 323 YAYESMDIEFECA-VSGKPVPTVNWMKNGD--VVIPSDYFQIVGG 364

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  179 bits (455), Expect = 6e-54
 Identities = 47/207 (22%), Positives = 75/207 (36%), Gaps = 17/207 (8%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS------FVVRPQDQKVGLNGIA 54
            I+ ++  D G Y+C  +N    R    A + + + P       F+ RP +        A
Sbjct: 180 QISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDA 239

Query: 55  SFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 114
             +C   G P PS  W +    + +          +     L I  V  +D+G + C   
Sbjct: 240 VLECCVSGYPPPSFTWLRGEEVIQLRSK----KYSLLGGSNLLISNVTDDDSGTYTCVVT 295

Query: 115 SVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNG 174
               + +  A L V       PP     PSN            C   G P P + W KNG
Sbjct: 296 YKNENISASAELTVLV-----PPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNG 350

Query: 175 NSLPPEDTRINVSSSGSLQI-DVLRDD 200
           + + P D    +    +L+I  V++ D
Sbjct: 351 DVVIPSD-YFQIVGGSNLRILGVVKSD 376

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  154 bits (390), Expect = 3e-44
 Identities = 61/279 (21%), Positives = 90/279 (32%), Gaps = 53/279 (18%)

Query: 19  NMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGS-PLPSVFWTQEGSQV 77
           + +                 FV  P D      G     C AE    +P + W ++G  +
Sbjct: 5   SELESSHHH-HHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLIL 63

Query: 78  LMFPGNAYGHLHVTQEGTLRIQGV-----QKEDAGFFVCSALSVAGSTTVRAFLQVTSVE 132
                           G+L IQ +      K D G + C A      + +    +V    
Sbjct: 64  ---ALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG 120

Query: 133 DTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLP--PEDTRINVSSSG 190
              P        + T  +     L C+ +G P P I W KN   L   P D+R+ V  SG
Sbjct: 121 ---PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG 177

Query: 191 SLQI-DVLRDD-----------------------------------FRAEPKDTRVASGE 214
           +LQI  +   D                                   F   P +     G+
Sbjct: 178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGK 237

Query: 215 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
            A+LEC    G P P+  W +  + I L  SK+ S+LG 
Sbjct: 238 DAVLEC-CVSGYPPPSFTWLRGEEVIQL-RSKKYSLLGG 274

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  128 bits (323), Expect = 1e-34
 Identities = 40/129 (31%), Positives = 55/129 (42%), Gaps = 6/129 (4%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
           +I+ V   D G Y C V           A LTV  PP F+  P +     +    F+C  
Sbjct: 278 LISNVTDDDSGTYTCVVTYKNENISAS-AELTVLVPPWFLNHPSNLYAYESMDIEFECAV 336

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
            G P+P+V W + G  V+        +  +     LRI GV K D GF+ C A + AG+ 
Sbjct: 337 SGKPVPTVNWMKNGDVVI-----PSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNA 391

Query: 121 TVRAFLQVT 129
              A L V 
Sbjct: 392 QSSAQLIVP 400

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  211 bits (539), Expect = 1e-64
 Identities = 61/279 (21%), Positives = 105/279 (37%), Gaps = 43/279 (15%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQD-QKVGLNGIASFQCVA 60
           + +V K D G+Y CY  N+ G+     A L V  PP F+ + +  + V  +    ++C  
Sbjct: 257 VLKVTKGDAGQYTCYASNVAGKDSCS-AQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI 315

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
            GSP   V W ++ ++  +   + +    V     L +  +  ED+G + C A + AGS 
Sbjct: 316 GGSPEIKVLWYKDETE--IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 373

Query: 121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE 180
           +    L+V       PP+ +  P        +   L C+  G+PP  + W+K+   L   
Sbjct: 374 SSSTSLKVKE-----PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL-RS 427

Query: 181 DTRINVSSSG---SLQI-DVLRDD----------------------------FRAEPKDT 208
             +  + S     S+ I +V   D                            F  +  D 
Sbjct: 428 GKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDI 487

Query: 209 RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKR 247
               GE   L+    +G    ++ W K+   I  ES   
Sbjct: 488 STVVGEEVQLQAT-IEGAEPISVAWFKDKGEIVRESDNI 525

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  199 bits (507), Expect = 5e-60
 Identities = 66/287 (22%), Positives = 109/287 (37%), Gaps = 44/287 (15%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTV---HAPPSFVVRPQDQKVGLNGIASFQ 57
            I +  +S  G+Y C   N +G   +  A LT+     PP F ++P    + L    +F+
Sbjct: 160 QILQTDQSHVGQYNCSASNPLGTASS-SAKLTLSEHEVPPFFDLKPVSVDLALGESGTFK 218

Query: 58  CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117
           C   G+    + W ++     + PG  Y    V    TL +  V K DAG + C A +VA
Sbjct: 219 CHVTGTAPIKITWAKDN--REIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 276

Query: 118 GSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
           G  +  A L V      PP  ++    ++ +         C+  GSP   + WYK+   +
Sbjct: 277 GKDSCSAQLGVQE----PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEI 332

Query: 178 PPED--TRINVSSSGSLQI-DVLRDD----------------------------FRAEPK 206
                     V S   L++ ++  +D                            FR +P 
Sbjct: 333 QESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPH 392

Query: 207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
                 G    LEC   +G P   + W K+ +  +L S K+  I+ +
Sbjct: 393 PVETLKGADVHLEC-ELQGTPPFQVSWHKDKR--ELRSGKKYKIMSE 436

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  177 bits (451), Expect = 7e-52
 Identities = 66/288 (22%), Positives = 107/288 (37%), Gaps = 41/288 (14%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA---PPSFVVRPQDQKVGLNGIASFQ 57
           +I +V  SD G+Y C  +N VG   +  A+L +     PPSF  + +D    L    +F+
Sbjct: 64  VINKVDHSDVGEYTCKAENSVGAVASS-AVLVIKERKLPPSFARKLKDVHETLGFPVAFE 122

Query: 58  CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117
           C   GS    V W ++G  +            +    TL+I    +   G + CSA +  
Sbjct: 123 CRINGSEPLQVSWYKDGELL--KDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPL 180

Query: 118 GSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
           G+ +  A L ++  E   PP   + P +  L L       C   G+ P  I W K+   +
Sbjct: 181 GTASSSAKLTLS--EHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREI 238

Query: 178 PPEDTR--INVSSSGSLQI-DVLRDD----------------------------FRAEPK 206
            P        V ++ +L +  V + D                            F  + +
Sbjct: 239 RPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLE 298

Query: 207 DTRVAS-GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
            +R+    E    EC    G PE  + W K+   I   S  R+S +  
Sbjct: 299 PSRIVKQDEHTRYEC-KIGGSPEIKVLWYKDETEIQESSKFRMSFVES 345

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  168 bits (427), Expect = 2e-48
 Identities = 41/203 (20%), Positives = 73/203 (35%), Gaps = 12/203 (5%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
           +  +   D G Y C   N  G   +    L V  PP F  +P   +         +C  +
Sbjct: 351 MYNLSVEDSGDYTCEAHNAAGSASSS-TSLKVKEPPVFRKKPHPVETLKGADVHLECELQ 409

Query: 62  GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
           G+P   V W ++  ++    G  Y  +      ++ I  V   D G + C A +  GS T
Sbjct: 410 GTPPFQVSWHKDKRELR--SGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDT 467

Query: 122 VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED 181
               + + +     PP      S+ +  +     L     G+ P  + W+K+   +  E 
Sbjct: 468 CVGSITLKA-----PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRES 522

Query: 182 TRINVS---SSGSLQI-DVLRDD 200
             I +S   +  +LQ       +
Sbjct: 523 DNIWISYSENIATLQFSRAEPAN 545

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  154 bits (392), Expect = 2e-43
 Identities = 46/254 (18%), Positives = 82/254 (32%), Gaps = 41/254 (16%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
           PP F+   +  +  +    + QC  +G+P   + W +E +++      AY         +
Sbjct: 5   PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKL--RSAPAYKMQFKNNVAS 62

Query: 96  LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAF 155
           L I  V   D G + C A +  G+    A L +   E   PP       +    L     
Sbjct: 63  LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIK--ERKLPPSFARKLKDVHETLGFPVA 120

Query: 156 LPCQAVGSPPPHIRWYKNGNSLPP-EDTRINVSS-SGSLQI-DVLRDD------------ 200
             C+  GS P  + WYK+G  L    + + +      +LQI    +              
Sbjct: 121 FECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPL 180

Query: 201 -------------------FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID 241
                              F  +P    +A GE+   +C    G     + W K+ +  +
Sbjct: 181 GTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKC-HVTGTAPIKITWAKDNR--E 237

Query: 242 LESSKRVSILGDPW 255
           +       +     
Sbjct: 238 IRPGGNYKMTLVEN 251

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  112 bits (281), Expect = 5e-28
 Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
           I  V  +D G+YQC   N VG        +T+ APP FV +  D    +      Q   E
Sbjct: 444 ILNVDSADIGEYQCKASNDVGSDTCV-GSITLKAPPRFVKKLSDISTVVGEEVQLQATIE 502

Query: 62  GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
           G+   SV W ++    ++   +     +     TL+    +  +AG + C   + AG+  
Sbjct: 503 GAEPISVAWFKDK-GEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQE 561

Query: 122 VRAFLQV 128
             A L V
Sbjct: 562 CFATLSV 568

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  205 bits (522), Expect = 1e-60
 Identities = 67/287 (23%), Positives = 112/287 (39%), Gaps = 53/287 (18%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
           I +    D GKY C V N VG    +  +LTV AP S  + P  Q V     A F C   
Sbjct: 310 IKDAVVEDSGKYLCVVNNSVGGESVE-TVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYT 368

Query: 62  GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
           G+P+ +V W ++G  +               E  LRI+ V+KED G + C   +   S  
Sbjct: 369 GNPIKTVSWMKDGKAI------------GHSESVLRIESVKKEDKGMYQCFVRNDRESAE 416

Query: 122 VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP-- 179
             A L++       PP+++     +T+      FL C A G+P P I W  +G  +    
Sbjct: 417 ASAELKLGGRF--DPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANND 474

Query: 180 -----EDTRINVSSSGSLQI-DVLRDD---------------------------FRAEPK 206
                +   +N      L I  V  +D                           +  + +
Sbjct: 475 RYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQME 534

Query: 207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
              + +GET ++ C P  G P  ++ W+++ +   L  +++  +  +
Sbjct: 535 KKAIVAGETLIVTC-PVAGYPIDSIVWERDNR--ALPINRKQKVFPN 578

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  175 bits (446), Expect = 4e-50
 Identities = 57/289 (19%), Positives = 100/289 (34%), Gaps = 43/289 (14%)

Query: 1   MITEVKKSD-EGKYQCYVQNMVG--ERETKPALLTVHAPPSFVVRP--------QDQKVG 49
            I EV   D    YQC  ++ +    R +      V   P     P          +   
Sbjct: 202 HIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYS 261

Query: 50  LNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFF 109
            +   +  C A+G P+P   W +                     GTL I+    ED+G +
Sbjct: 262 GSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKY 321

Query: 110 VCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR 169
           +C   +  G  +V   L VT+     P   ++ P  QT+     A   CQ  G+P   + 
Sbjct: 322 LCVVNNSVGGESVETVLTVTA-----PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS 376

Query: 170 WYKNGNSLPPEDT--RIN--------------------VSSSGSLQIDVLRDD--FRAEP 205
           W K+G ++   ++  RI                       +S  L++    D    R   
Sbjct: 377 WMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAF 436

Query: 206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
           ++  +  G +  L+C    G P P + W+ +G+   + ++ R  +    
Sbjct: 437 QEETMEPGPSVFLKC-VAGGNPTPEISWELDGK--KIANNDRYQVGQYV 482

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  173 bits (441), Expect = 2e-49
 Identities = 65/291 (22%), Positives = 101/291 (34%), Gaps = 46/291 (15%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA---PPSFVVRPQDQKVGLNGIASFQ 57
            I  VKK D+G YQC+V+N     E   A L +     PP      Q++ +        +
Sbjct: 392 RIESVKKEDKGMYQCFVRNDRESAEAS-AELKLGGRFDPPVIRQAFQEETMEPGPSVFLK 450

Query: 58  CVAEGSPLPSVFWTQEGSQVLM---FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 114
           CVA G+P P + W  +G ++     +    Y  ++      L I  V   D G + C A 
Sbjct: 451 CVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAK 510

Query: 115 SVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNG 174
           S  G     A L V       P I Q     + +       + C   G P   I W ++ 
Sbjct: 511 SKVGVAEHSAKLNVYG----LPYIRQ--MEKKAIVAGETLIVTCPVAGYPIDSIVWERDN 564

Query: 175 NSLPPEDTRINVSSSGSLQI-DVLRDD-------------------------------FR 202
            +LP  + +  V  +G+L I +V R+                                  
Sbjct: 565 RALPI-NRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIP 623

Query: 203 AEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
              ++     G+   L C  P G     + W  +GQ I  +     S +G 
Sbjct: 624 FAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGR 674

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  167 bits (425), Expect = 4e-47
 Identities = 62/290 (21%), Positives = 100/290 (34%), Gaps = 52/290 (17%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
            IT V  +D G Y+C  ++ VG  E   A L V+  P ++ + + + +         C  
Sbjct: 493 NITSVHANDGGLYKCIAKSKVGVAEHS-AKLNVYGLP-YIRQMEKKAIVAGETLIVTCPV 550

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQK-EDAGFFVCSALSVAG- 118
            G P+ S+ W ++   +            V   GTL I+ V++  D   + C A +  G 
Sbjct: 551 AGYPIDSIVWERDNRAL-----PINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGY 605

Query: 119 STTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP-HIRWYKNGNSL 177
           S      +QV       P I+          +     L C   G   P +I W  +G ++
Sbjct: 606 SARGSLEVQVMV----LPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAI 661

Query: 178 PPED---TRINVSSSGSLQI-DVLRDD----------------------------FRAEP 205
             +    T         L I  V                                +  EP
Sbjct: 662 SEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEP 721

Query: 206 KDTRVASGETALLECGPPKGQPEPTLHWKKNG-----QFIDLESSKRVSI 250
            D   A G  A +EC    G P+P + WKK       ++ DL+ S  + +
Sbjct: 722 TDKAFAQGSDAKVEC-KADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRV 770

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  164 bits (416), Expect = 5e-46
 Identities = 51/280 (18%), Positives = 81/280 (28%), Gaps = 44/280 (15%)

Query: 5   VKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE--- 61
            ++     Y C  +N  G   ++   +       +      + V     A  +C+     
Sbjct: 107 RQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFV 166

Query: 62  GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDA-GFFVCSALSVAGST 120
              +  V W  +  +         G   V   G L I+ V  ED    + C         
Sbjct: 167 ADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGE 226

Query: 121 TVR-AFLQVTSVED-----TPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNG 174
           T   A      + +      P  +       +T    S   L C A G P P  RWYK  
Sbjct: 227 TRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFI 286

Query: 175 NSLPPEDTRI----NVSSSGSLQI-DVLRDD----------------------------F 201
                +   +        SG+L I D + +D                             
Sbjct: 287 EGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSA 346

Query: 202 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID 241
           + +P    V  G  A+  C    G P  T+ W K+G+ I 
Sbjct: 347 KIDPPTQTVDFGRPAVFTC-QYTGNPIKTVSWMKDGKAIG 385

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  162 bits (410), Expect = 4e-45
 Identities = 47/210 (22%), Positives = 80/210 (38%), Gaps = 17/210 (8%)

Query: 1   MITEV-KKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFV-VRPQDQKVGLNGIASFQC 58
           +I  V + SD+  Y C  +N  G        + V   P  +    ++    +    +  C
Sbjct: 582 IIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHC 641

Query: 59  VAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSALSV 116
              G  LP ++ WT +G  +            V +    L I+ V+   AG F C A ++
Sbjct: 642 SVPGGDLPLNIDWTLDGQAIS--EDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNL 699

Query: 117 AGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNS 176
           AG       L V       PP   + P+++     S A + C+A G P P + W K    
Sbjct: 700 AGHQQFTTPLNVYV-----PPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGD 754

Query: 177 LPPEDTRINVS-----SSGSLQI-DVLRDD 200
            P E   +  S       G+L + ++ + +
Sbjct: 755 TPGEYKDLKKSDNIRVEEGTLHVDNIQKTN 784

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  136 bits (343), Expect = 4e-36
 Identities = 47/304 (15%), Positives = 87/304 (28%), Gaps = 64/304 (21%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERE-TKPALLTVHAPPSFVVRPQDQKVGLNG-IASFQCV 59
           +   +      +        G +             P F+  P ++    N   A  +C 
Sbjct: 3   MPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECK 62

Query: 60  AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKED------AGFFVCSA 113
           A G+P+P + W +     +   G+  G   ++ +G L     + ED      A  + C A
Sbjct: 63  ASGNPMPEIIWIRSDGTAV---GDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLA 119

Query: 114 LSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA---VGSPPPHIRW 170
            +  GS   R       V        +   + + +   + A + C     V      + W
Sbjct: 120 RNQFGSIISRDVH----VRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSW 175

Query: 171 YKNGNSLP----PEDTRINVSSSGSLQI-DVLRDD------------------------- 200
           + +           D +  V  SG L I +V  +D                         
Sbjct: 176 HTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGR 235

Query: 201 ---------------FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS 245
                            A+      +   T  L C P +G P P   W K  +    + +
Sbjct: 236 LVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLC-PAQGYPVPVFRWYKFIEGTTRKQA 294

Query: 246 KRVS 249
             ++
Sbjct: 295 VVLN 298

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  120 bits (302), Expect = 1e-30
 Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 44/200 (22%)

Query: 96  LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAF 155
           + +   + +    F   AL   GS T+ A       +   P  ++   +       + A 
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAA--NPPDADQKGPVFLKEPTNRIDFSNSTGAE 58

Query: 156 LPCQAVGSPPPHIRWYK-NGNSLPPEDTRINVSSSGSLQID------------------- 195
           + C+A G+P P I W + +G ++        +SS G L                      
Sbjct: 59  IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 118

Query: 196 -----------------VLRDDFRAEPKDTRVASGETALLECGPPK--GQPEPTLHWKKN 236
                            V+   + A+     V  G +A+++C  P         + W  +
Sbjct: 119 ARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTD 178

Query: 237 GQFIDL---ESSKRVSILGD 253
            +       E   +  +L  
Sbjct: 179 EEENYFPGAEYDGKYLVLPS 198

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  110 bits (276), Expect = 3e-27
 Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 4/138 (2%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
            I  V+ S  G + C+ +N+ G ++     L V+ PP +++ P D+       A  +C A
Sbjct: 680 TIEAVEASHAGNFTCHARNLAGHQQFT-TPLNVYVPPRWILEPTDKAFAQGSDAKVECKA 738

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT-QEGTLRIQGVQKEDAGFFVCSALSVAGS 119
           +G P P V W +          +     ++  +EGTL +  +QK + G+++C A++  GS
Sbjct: 739 DGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGS 798

Query: 120 TTVRAFLQVTSVEDTPPP 137
                 +   SV+     
Sbjct: 799 GLSAVIM--ISVQAHHHH 814

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  183 bits (467), Expect = 7e-57
 Identities = 49/206 (23%), Positives = 74/206 (35%), Gaps = 9/206 (4%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
            I      D G Y+C V    G +      + +     F   P  Q+      A   C  
Sbjct: 65  TIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDV 124

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
             S  P++ W  +G  V++          V     L+I+G++K D G + C    +A   
Sbjct: 125 VSSLPPTIIWKHKGRDVILKKD---VRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGE 181

Query: 121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE 180
                +QV  V   P    +    N T  L     L C A G P P + W K+G  +  E
Sbjct: 182 INFKDIQVI-VNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENE 240

Query: 181 D----TRINVSSSGSLQI-DVLRDDF 201
           +      I    S  L I +V ++D 
Sbjct: 241 EEDDEKHIFSDDSSELTIRNVDKNDE 266

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  151 bits (383), Expect = 2e-44
 Identities = 47/251 (18%), Positives = 78/251 (31%), Gaps = 43/251 (17%)

Query: 37  PSFVVRPQDQKVGLNGIASFQCVAEGSPL-PSVFWTQEGSQVLMFPGNAYGHLHVTQE-G 94
               + P   ++ +     F C   G      + W     + L         +    +  
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 95  TLRIQGVQKEDAGFFVCSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSV 153
           TL I     +DAG + C   +  G+       +++         + +  P+ Q       
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI-----FQKLMFKNAPTPQEFKEGED 117

Query: 154 AFLPCQAVGSPPPHIRWYKNGNSLPPE-DTRINVSSSGSLQI-DVLRDD----------- 200
           A + C  V S PP I W   G  +  + D R  V S+  LQI  + + D           
Sbjct: 118 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRIL 177

Query: 201 ---------------------FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQF 239
                                 R    +     G++  L C    G PEPT+ W K+G+ 
Sbjct: 178 ARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVC-DADGFPEPTMSWTKDGEP 236

Query: 240 IDLESSKRVSI 250
           I+ E       
Sbjct: 237 IENEEEDDEKH 247

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  135 bits (342), Expect = 3e-38
 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 3/133 (2%)

Query: 1   MITEVKKSDEGKYQCYVQNMVG-ERETKPALLTVHAPPSFVVRPQ--DQKVGLNGIASFQ 57
            I  +KK+DEG Y+C  + +   E   K   + V+ PP+   R    +    L    +  
Sbjct: 158 QIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLV 217

Query: 58  CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117
           C A+G P P++ WT++G  +     +   H+       L I+ V K D   +VC A + A
Sbjct: 218 CDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKA 277

Query: 118 GSTTVRAFLQVTS 130
           G       L+V +
Sbjct: 278 GEQDASIHLKVFA 290

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 92.2 bits (229), Expect = 4e-22
 Identities = 35/153 (22%), Positives = 51/153 (33%), Gaps = 37/153 (24%)

Query: 137 PIVQVGPSNQTLPLHSVAFLPCQAVGSPP-PHIRWYK-NGNSLPPEDTRINVS----SSG 190
             V + PS   + +    F  CQ  G      I W+  NG  L P   RI+V      S 
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 191 SLQI-DVLRDD-----------------------------FRAEPKDTRVASGETALLEC 220
           +L I +   DD                             F+  P       GE A++ C
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122

Query: 221 GPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
                   PT+ WK  G+ + L+   R  +L +
Sbjct: 123 -DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN 154

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  181 bits (461), Expect = 6e-56
 Identities = 46/203 (22%), Positives = 75/203 (36%), Gaps = 9/203 (4%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
            I      D G Y+C   +  G+ +    +L ++   +F      Q+      A   C  
Sbjct: 63  TIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRV 122

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL-SVAGS 119
             SP P+V W     +V     N +    +     L+I  + K D G + C       G 
Sbjct: 123 SSSPAPAVSWLYHNEEVTTISDNRF---AMLANNNLQILNINKSDEGIYRCEGRVEARGE 179

Query: 120 TTVRAFLQVTSVEDTPPPIVQV-GPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLP 178
              R  + + +V   PP I       N T          C+A GSP P I W++NG  + 
Sbjct: 180 IDFRDIIVIVNV---PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE 236

Query: 179 PEDTRINVSSSGSLQI-DVLRDD 200
             +  I   S+  L + +++  D
Sbjct: 237 ENEKYILKGSNTELTVRNIINSD 259

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  159 bits (404), Expect = 1e-47
 Identities = 44/254 (17%), Positives = 78/254 (30%), Gaps = 45/254 (17%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
           A     +     ++ +     F C A G P    ++  +G    +               
Sbjct: 3   ALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQG--EKIISTQRVVVQKEGVRS 60

Query: 95  TLRIQGVQKEDAGFFVCSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSV 153
            L I     EDAG + C A    G T      L++           +   S Q       
Sbjct: 61  RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI-----YQKLTFREVVSPQEFKQGED 115

Query: 154 AFLPCQAVGSPPPHIRWYKNGNSLPPE-DTRINVSSSGSLQI-DVLRDD----------- 200
           A + C+   SP P + W  +   +    D R  + ++ +LQI ++ + D           
Sbjct: 116 AEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVE 175

Query: 201 ---------------------FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQF 239
                                   +  +     GE     C    G PEP + W +NG+ 
Sbjct: 176 ARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSC-RASGSPEPAISWFRNGK- 233

Query: 240 IDLESSKRVSILGD 253
             +E +++  + G 
Sbjct: 234 -LIEENEKYILKGS 246

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  117 bits (295), Expect = 2e-31
 Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 11/143 (7%)

Query: 1   MITEVKKSDEGKYQCYVQNMV-GERETKPALLTVHAPPSFVV--RPQDQKVGLNGIASFQ 57
            I  + KSDEG Y+C  +    GE + +  ++ V+ PP+  +  +  +         +F 
Sbjct: 156 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS 215

Query: 58  CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117
           C A GSP P++ W + G  +     N   ++       L ++ +   D G +VC A + A
Sbjct: 216 CRASGSPEPAISWFRNGKLI---EENEK-YILKGSNTELTVRNIINSDGGPYVCRATNKA 271

Query: 118 GSTTVRAFLQVTSVEDTPPPIVQ 140
           G    +AFLQV            
Sbjct: 272 GEDEKQAFLQVFV----QHHHHH 290

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  178 bits (452), Expect = 9e-55
 Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 14/205 (6%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQD-QKVGLNGIASFQCV 59
            + +V K D G+Y CY  N+ G+     A L V  PP F+ + +  + V  +    ++C 
Sbjct: 64  TVLKVTKGDAGQYTCYASNVAGKDSCS-AQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 122

Query: 60  AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
             GSP   V W ++ +++     + +    V     L +  +  ED+G + C A + AGS
Sbjct: 123 IGGSPEIKVLWYKDETEIQ--ESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS 180

Query: 120 TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP 179
            +    L+V       PP+ +  P        +   L C+  G+PP  + W+K+   L  
Sbjct: 181 ASSSTSLKVKE-----PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS 235

Query: 180 EDTRINVSSSG---SLQI-DVLRDD 200
              +  + S     S+ I +V   D
Sbjct: 236 -GKKYKIMSENFLTSIHILNVDSAD 259

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  173 bits (441), Expect = 5e-53
 Identities = 57/250 (22%), Positives = 95/250 (38%), Gaps = 40/250 (16%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
           APP F ++P    + L    +F+C   G+    + W ++  ++   PG  Y    V    
Sbjct: 4   APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIR--PGGNYKMTLVENTA 61

Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVA 154
           TL +  V K DAG + C A +VAG  +  A L V      PP  ++    ++ +      
Sbjct: 62  TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE----PPRFIKKLEPSRIVKQDEHT 117

Query: 155 FLPCQAVGSPPPHIRWYKNGNSLPPED--TRINVSSSGSLQI-DVLRDD----------- 200
              C+  GSP   + WYK+   +          V S   L++ ++  +D           
Sbjct: 118 RYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNA 177

Query: 201 -----------------FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLE 243
                            FR +P       G    LEC   +G P   + W K+ +  +L 
Sbjct: 178 AGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLEC-ELQGTPPFQVSWHKDKR--ELR 234

Query: 244 SSKRVSILGD 253
           S K+  I+ +
Sbjct: 235 SGKKYKIMSE 244

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  128 bits (324), Expect = 1e-35
 Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 9/133 (6%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
            +  +   D G Y C   N  G   +    L V  PP F  +P   +         +C  
Sbjct: 158 EMYNLSVEDSGDYTCEAHNAAGSASSS-TSLKVKEPPVFRKKPHPVETLKGADVHLECEL 216

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSALSVA 117
           +G+P   V W ++  ++    G       +  E    ++ I  V   D G + C A +  
Sbjct: 217 QGTPPFQVSWHKDKREL--RSGK---KYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 271

Query: 118 GSTTVRAFLQVTS 130
           GS T    + + +
Sbjct: 272 GSYTCVGSITLKA 284

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  178 bits (454), Expect = 8e-54
 Identities = 51/300 (17%), Positives = 92/300 (30%), Gaps = 51/300 (17%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQC-V 59
           +    + SDEG YQC+ +   G   ++          +   +  ++           C +
Sbjct: 65  VFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVL 124

Query: 60  AEGSPLPSVFWTQEGSQVLM--FPGNAYGHLHVTQEGTLRIQGVQKEDA---GFFVCSAL 114
               P P + W +  S         +    +    +G L    V KED      +VC+A 
Sbjct: 125 PNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAK 184

Query: 115 SVAGSTTVR-AFLQVTSVED-----TPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHI 168
           + A    V     ++  V          P+ Q    +       V  + C    +P  + 
Sbjct: 185 NAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYP 244

Query: 169 RWYKNGNSLPPED----TRINVSSSGSLQI-DVLRDD----------------------- 200
            ++KNG  +        TR N +S   L     L +D                       
Sbjct: 245 NYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLT 304

Query: 201 ------FRAEPKD-TRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
                 +  +P+    V  G+   + C    G P P + W  N + +   S  R ++   
Sbjct: 305 VVSAPKYEQKPEKVIVVKQGQDVTIPC-KVTGLPAPNVVWSHNAKPL---SGGRATVTDS 360

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  161 bits (408), Expect = 4e-47
 Identities = 39/211 (18%), Positives = 63/211 (29%), Gaps = 19/211 (9%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTV----------HAPPSFVVRPQDQKVGLN 51
           +T+   SD  KY C  +N   + E       +             P      +D      
Sbjct: 168 VTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAG 227

Query: 52  GIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
            +    C+   +P+    + + G  V   P +     + T    L  +    ED G + C
Sbjct: 228 DVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTC 287

Query: 112 SALSVAGSTTVR-AFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRW 170
              +  G        L V S     P   Q       +       +PC+  G P P++ W
Sbjct: 288 EVDNGVGKPQKHSLKLTVVS----APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVW 343

Query: 171 YKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
             N   L      +   +   L I  V   D
Sbjct: 344 SHNAKPLSGGRATV---TDSGLVIKGVKNGD 371

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  143 bits (363), Expect = 2e-40
 Identities = 49/271 (18%), Positives = 80/271 (29%), Gaps = 59/271 (21%)

Query: 31  LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVF-WTQEGSQVLMFPGNAYGHLH 89
           L V   P    +P +     N     +C+ EG+     + W ++G     +    +    
Sbjct: 1   LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKS---YNWQEHNAAL 57

Query: 90  VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLP 149
              EG+L     Q  D G + C A + AG  + R    V S   T           +T  
Sbjct: 58  RKDEGSLVFLRPQASDEGHYQCFAETPAGVASSR----VISFRKTYLIASPAKTHEKTPI 113

Query: 150 LHSVAFLPCQAV-GSPPPHIRWYKNGNSLPP------EDTRINVSSSGSLQI-DVLRDD- 200
                 L C      P P I W K  +   P       D RI     G+L    V ++D 
Sbjct: 114 EGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDV 173

Query: 201 -----------------------------------------FRAEPKDTRVASGETALLE 219
                                                     +   KD    +G+  ++ 
Sbjct: 174 SDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIY 233

Query: 220 CGPPKGQPEPTLHWKKNGQFIDLESSKRVSI 250
           C      P    ++ KNG+ ++     R++ 
Sbjct: 234 C-MYGSNPMGYPNYFKNGKDVNGNPEDRITR 263

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  124 bits (313), Expect = 3e-33
 Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 8/129 (6%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNG-IASFQCV 59
           +       DEG Y C V N VG+ +     LTV + P +  +P+   V   G   +  C 
Sbjct: 273 LFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCK 332

Query: 60  AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
             G P P+V W+     +    G          +  L I+GV+  D G++ C A +  G 
Sbjct: 333 VTGLPAPNVVWSHNAKPL---SGGRA----TVTDSGLVIKGVKNGDKGYYGCRATNEHGD 385

Query: 120 TTVRAFLQV 128
                 +QV
Sbjct: 386 KYFETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 99.2 bits (247), Expect = 6e-24
 Identities = 26/155 (16%), Positives = 44/155 (28%), Gaps = 37/155 (23%)

Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP-HIRWYKNGNSLPP-EDTRINVSSSGSLQ 193
            P+++  P+      ++   L C   G+       W K+G S    E         GSL 
Sbjct: 6   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV 65

Query: 194 IDVLRD------------------------------DFRAEPKDTRVASGETALLECGPP 223
               +                                  A+  +     G    L+C  P
Sbjct: 66  FLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLP 125

Query: 224 KGQPEPTLHWKKNGQFID-----LESSKRVSILGD 253
              P+P + WKK     D      +  +R++   D
Sbjct: 126 NAYPKPLITWKKRLSGADPNADVTDFDRRITAGPD 160

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  178 bits (452), Expect = 1e-53
 Identities = 62/290 (21%), Positives = 88/290 (30%), Gaps = 47/290 (16%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQD-QKVGLNGIASFQCV 59
           +   VK  D G YQC   N  G   ++ A L       F    +D  K+       F C 
Sbjct: 65  ISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCS 124

Query: 60  A-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
                P  S  W        +              G L I   +  D G + C A S   
Sbjct: 125 PPPHYPALSYRWLLNEFPNFIPADG--RRFVSQTTGNLYIAKTEASDLGNYSCFATSHID 182

Query: 119 STTVRAFLQVT-------SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWY 171
             T   F + +             P I    P++       +  L C A G+P P I+W 
Sbjct: 183 FITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWR 242

Query: 172 KNGNSLPPEDTRINVSSSGSLQI-DVLRDD----------------------------FR 202
           K   S   +     +SS   L I +V  +D                            + 
Sbjct: 243 KLDGSQTSK----WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWL 298

Query: 203 AEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILG 252
               DT    G      C    G+P P + W ++GQ   L S  R+ + G
Sbjct: 299 DVITDTEADIGSDLRWSC-VASGKPRPAVRWLRDGQ--PLASQNRIEVSG 345

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  160 bits (406), Expect = 9e-47
 Identities = 48/212 (22%), Positives = 86/212 (40%), Gaps = 27/212 (12%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGE----RETKPALLTV-------HAPPSFVVRPQDQKVG 49
            I + + SD G Y C+  + +        +K + L++       +AP      P D    
Sbjct: 161 YIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYAL 220

Query: 50  LNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFF 109
              + + +C A G+P+P + W +                 ++ E  L IQ V  ED G +
Sbjct: 221 TGQMVTLECFAFGNPVPQIKWRKLDGSQTSK--------WLSSEPLLHIQNVDFEDEGTY 272

Query: 110 VCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR 169
            C A ++ G  T +  + + +      P      ++    + S     C A G P P +R
Sbjct: 273 ECEAENIKGRDTYQGRIIIHA-----QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVR 327

Query: 170 WYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
           W ++G  L  ++ RI V S G L+   ++ +D
Sbjct: 328 WLRDGQPLASQN-RIEV-SGGELRFSKLVLED 357

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  124 bits (313), Expect = 2e-33
 Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 7/130 (5%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
            I  V   DEG Y+C  +N+ G    +   + +HA P ++    D +  +     + CVA
Sbjct: 260 HIQNVDFEDEGTYECEAENIKGRDTYQ-GRIIIHAQPDWLDVITDTEADIGSDLRWSCVA 318

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
            G P P+V W ++G  +      +   + V+  G LR   +  ED+G + C A +  G+ 
Sbjct: 319 SGKPRPAVRWLRDGQPL-----ASQNRIEVSG-GELRFSKLVLEDSGMYQCVAENKHGTV 372

Query: 121 TVRAFLQVTS 130
              A L V +
Sbjct: 373 YASAELTVQA 382

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  119 bits (300), Expect = 2e-31
 Identities = 47/251 (18%), Positives = 71/251 (28%), Gaps = 58/251 (23%)

Query: 36  PPSFVVRPQDQKVGLNGI---ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
            P F  +P              +  C A  +P  +  W   G+++ M P       +   
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGP----DSRYRLV 59

Query: 93  EGTLRI-QGVQKEDAGFFVCSALSVAGSTTVR-AFLQVTSVEDTPPPIVQVGPSNQTLPL 150
            G L I   V+ +DAG + C A +  G+   R A L+                    +  
Sbjct: 60  AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFG----FLQEFSAEERDPVKITE 115

Query: 151 HSVAFLPCQAV-GSPPPHIRWYKNG--NSLPPEDTRINVSSSGSLQI-DVLRDD------ 200
                  C      P    RW  N   N +P +  R    ++G+L I      D      
Sbjct: 116 GWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSC 175

Query: 201 ----------------------------------FRAEPKDTRVASGETALLECGPPKGQ 226
                                                 P DT   +G+   LEC    G 
Sbjct: 176 FATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLEC-FAFGN 234

Query: 227 PEPTLHWKKNG 237
           P P + W+K  
Sbjct: 235 PVPQIKWRKLD 245

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 96.9 bits (241), Expect = 4e-23
 Identities = 26/155 (16%), Positives = 44/155 (28%), Gaps = 35/155 (22%)

Query: 134 TPPPIVQVGPSNQTLPLHSV---AFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG 190
           +  P+ +  P++   P  S      L C+A  +PP   RW  NG  L           +G
Sbjct: 2   SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG 61

Query: 191 SL--------------------------------QIDVLRDDFRAEPKDTRVASGETALL 218
            L                                +   L++    E    ++  G   + 
Sbjct: 62  DLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMF 121

Query: 219 ECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
            C PP   P  +  W  N     + +  R  +   
Sbjct: 122 TCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQT 156

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  176 bits (449), Expect = 4e-53
 Identities = 60/285 (21%), Positives = 86/285 (30%), Gaps = 45/285 (15%)

Query: 5   VKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQ-DQKVGLNGIASFQCVA-EG 62
            K  D G YQC   N  G   ++ A L      +F  R +    V         C     
Sbjct: 70  NKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPH 129

Query: 63  SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV 122
           S   S  W                     + G L I  V+K D G + C   +   +  V
Sbjct: 130 SGELSYAWIFNEYPSYQDNR----RFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKV 185

Query: 123 RAFLQVTSVEDT------PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNS 176
                   + +        P I    P        +   L C A+G+P P I W +    
Sbjct: 186 LGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGK 245

Query: 177 LPPEDTRINVSSSGSLQI-DVLRDD----------------------------FRAEPKD 207
                 R    S+G L+I +  ++D                            +     D
Sbjct: 246 PIARKARR-HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIIND 304

Query: 208 TRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILG 252
             VA  E+   EC    G+P+PT  W KNG    L +  R+ I  
Sbjct: 305 IHVAMEESVFWEC-KANGRPKPTYRWLKNGD--PLLTRDRIQIEQ 346

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  163 bits (415), Expect = 4e-48
 Identities = 57/211 (27%), Positives = 84/211 (39%), Gaps = 23/211 (10%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERET--KPALLTV--------HAPPSFVVRPQDQKVGL 50
            I +V+KSD G Y C V N V   +    P  L +        + P   V  P+      
Sbjct: 160 YIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEK 219

Query: 51  NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFV 110
                 +C A G+P+P++ W +   + +     A  H      G L I   Q+EDAG + 
Sbjct: 220 GTTVKLECFALGNPVPTILWRRADGKPI--ARKARRHKS---NGILEIPNFQQEDAGSYE 274

Query: 111 CSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRW 170
           C A +  G    +  L   +      P      ++  + +    F  C+A G P P  RW
Sbjct: 275 CVAENSRGKNVAKGQLTFYA-----QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRW 329

Query: 171 YKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
            KNG+ L   D RI +   G+L I  V   D
Sbjct: 330 LKNGDPLLTRD-RIQI-EQGTLNITIVNLSD 358

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  130 bits (328), Expect = 2e-35
 Identities = 50/262 (19%), Positives = 82/262 (31%), Gaps = 56/262 (21%)

Query: 35  APPSFVVRPQDQKVGLN---GIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
           + P FV  P      L+         C  +G+P P + W   G+ V +         +  
Sbjct: 4   SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGM----DFRYSV 59

Query: 92  QEGTLRIQGV-QKEDAGFFVCSALSVAGS-TTVRAFLQVTSVEDTPPPIVQVGPSNQTLP 149
            +G+L I    + +DAG + C A +  G+  +  A LQ                S  ++ 
Sbjct: 60  VDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFA----YLENFKTRTRSTVSVR 115

Query: 150 LHSVAFLPCQAV-GSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD------- 200
                 L C     S      W  N      ++ R     +G+L I  V + D       
Sbjct: 116 RGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCV 175

Query: 201 --------------------------------FRAEPKDTRVASGETALLECGPPKGQPE 228
                                               P+      G T  LEC    G P 
Sbjct: 176 VTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLEC-FALGNPV 234

Query: 229 PTLHWKK-NGQFIDLESSKRVS 249
           PT+ W++ +G+ I  ++ +  S
Sbjct: 235 PTILWRRADGKPIARKARRHKS 256

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  126 bits (318), Expect = 5e-34
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 7/130 (5%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
            I   ++ D G Y+C  +N  G+   K   LT +A P++V    D  V +     ++C A
Sbjct: 261 EIPNFQQEDAGSYECVAENSRGKNVAK-GQLTFYAQPNWVQIINDIHVAMEESVFWECKA 319

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
            G P P+  W + G  +L         + + ++GTL I  V   DAG + C A +  G  
Sbjct: 320 NGRPKPTYRWLKNGDPLL-----TRDRIQI-EQGTLNITIVNLSDAGMYQCVAENKHGVI 373

Query: 121 TVRAFLQVTS 130
              A L V +
Sbjct: 374 FSSAELSVIA 383

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 94.5 bits (235), Expect = 2e-22
 Identities = 33/153 (21%), Positives = 46/153 (30%), Gaps = 36/153 (23%)

Query: 136 PPIVQVGPSNQTLPLHS---VAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSL 192
            P+    PS+   PL S      L C+  G+P PHIRW  NG  +            GSL
Sbjct: 5   GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64

Query: 193 QID--------------------------------VLRDDFRAEPKDTRVASGETALLEC 220
            I+                                 L +          V  G+  +L C
Sbjct: 65  LINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLC 124

Query: 221 GPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
           GPP    E +  W  N      + ++R      
Sbjct: 125 GPPPHSGELSYAWIFNEYPS-YQDNRRFVSQET 156

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  172 bits (437), Expect = 3e-52
 Identities = 65/258 (25%), Positives = 94/258 (36%), Gaps = 40/258 (15%)

Query: 32  TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
           T   PP F+  P+DQ     G+ASF C A G P P V W ++G +V             +
Sbjct: 2   TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFE-TIEFDES 60

Query: 92  QEGTLRIQGVQ-KEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTP--PPIVQVGPSNQTL 148
               LRIQ ++   D   + C A +  G  TV A L V   +  P   P + +GP  + +
Sbjct: 61  AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120

Query: 149 PLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP--EDTRINVSSSGSLQI-DVLRDD----- 200
                A + C A G+P P I W+K+   + P   + RI    SG+LQI      D     
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYE 180

Query: 201 ---------------------------FRAEPKDTRVASGETALLECGPPKGQPEPTLHW 233
                                      F   P    +  G    + C    G P P + W
Sbjct: 181 CVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCV-AVGSPMPYVKW 239

Query: 234 KKNGQFIDLESSKRVSIL 251
            +  + +  E    V   
Sbjct: 240 MQGAEDLTPEDDMPVGRN 257

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  162 bits (412), Expect = 1e-48
 Identities = 57/208 (27%), Positives = 91/208 (43%), Gaps = 16/208 (7%)

Query: 1   MITEVK-KSDEGKYQCYVQNMVGERETKPALLTVHAP-------PSFVVRPQDQKVGLNG 52
            I  ++   DE  Y+C  QN VGE     A LTV          P+  + PQ + V    
Sbjct: 66  RIQPLRTPRDENVYECVAQNSVGEITVH-AKLTVLREDQLPSGFPNIDMGPQLKVVERTR 124

Query: 53  IASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 112
            A+  C A G+P P + W ++   V   P  + G +   + G L+I+  ++ D G + C 
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPV--DPSASNGRIKQLRSGALQIESSEETDQGKYECV 182

Query: 113 ALSVAGS-TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWY 171
           A + AG   +  A L V  V++  P      P +  +       + C AVGSP P+++W 
Sbjct: 183 ATNSAGVRYSSPANLYVR-VQNVAPRFSI-LPMSHEIMPGGNVNITCVAVGSPMPYVKWM 240

Query: 172 KNGNSLPPEDTRINVSSSGSLQIDVLRD 199
           +    L PED          L++  ++D
Sbjct: 241 QGAEDLTPEDDMPV--GRNVLELTDVKD 266

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  119 bits (301), Expect = 3e-32
 Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 16/149 (10%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVH---APPSFVVRPQDQKVGLNGIASFQ 57
            I   +++D+GKY+C   N  G R + PA L V      P F + P   ++   G  +  
Sbjct: 167 QIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNIT 226

Query: 58  CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117
           CVA GSP+P V W Q    +          +     G   ++    +D+  + C A+S  
Sbjct: 227 CVAVGSPMPYVKWMQGAEDL---TPEDDMPV-----GRNVLELTDVKDSANYTCVAMSSL 278

Query: 118 GSTTVRAFLQVTSVEDTPPPIVQVGPSNQ 146
           G     A +   +V+  P    +    + 
Sbjct: 279 GVIEAVAQI---TVKSLPKAGTK--HHHH 302

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 97.6 bits (243), Expect = 6e-24
 Identities = 36/159 (22%), Positives = 52/159 (32%), Gaps = 42/159 (26%)

Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED---TRINVSSSGSL 192
           PP     P +Q      VA   CQA G P P + W K G  +  +       + S+   L
Sbjct: 6   PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65

Query: 193 QID-----------------------------VLRDD--------FRAEPKDTRVASGET 215
           +I                              VLR+D            P+   V    T
Sbjct: 66  RIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRT 125

Query: 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESS-KRVSILGD 253
           A + C    G P+P + W K+   +D  +S  R+  L  
Sbjct: 126 ATMLC-AASGNPDPEITWFKDFLPVDPSASNGRIKQLRS 163

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
           F  EPKD    SG  A   C    G P+P + W K G+ ++ +  + +      
Sbjct: 9   FIKEPKDQIGVSGGVASFVC-QATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  179 bits (456), Expect = 3e-52
 Identities = 48/273 (17%), Positives = 84/273 (30%), Gaps = 48/273 (17%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTV-HAPPSFVVRPQDQKVGLNGIASFQCV 59
            +  V ++D G Y+C +QN +    + P +L V + P    + P           S  C 
Sbjct: 345 TLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCH 404

Query: 60  AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
           A  +P     W  +G+                    L I  + ++++G + C A + A  
Sbjct: 405 AASNPPAQYSWLIDGN-------------IQQHTQELFISNITEKNSGLYTCQANNSASG 451

Query: 120 TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP 179
            +      +T      P       +++ +         C+          W+ NG SLP 
Sbjct: 452 HSRTTVKTITVSA-ELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPV 509

Query: 180 EDTRINVSSSGSLQI-DVLRDD------------------------------FRAEPKDT 208
                  + + +L + +V R+D                                  P D+
Sbjct: 510 SPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDS 569

Query: 209 RVASGETALLECGPPKGQPEPTLHWKKNGQFID 241
              SG    L C      P P   W+ NG    
Sbjct: 570 SYLSGANLNLSC-HSASNPSPQYSWRINGIPQQ 601

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  150 bits (379), Expect = 3e-41
 Identities = 48/280 (17%), Positives = 79/280 (28%), Gaps = 40/280 (14%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA--PPSFVVRPQDQKVGLNGIASFQC 58
           +I  + ++D G Y  +V       E       V+   P   +     + V      +F C
Sbjct: 74  LIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTC 133

Query: 59  VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
             E     +  W      + + P             TL +  V + D   + C   +   
Sbjct: 134 EPETQD-ATYLWWVNNQSLPVSPRLQL----SNGNRTLTLFNVTRNDTASYKCETQNPVS 188

Query: 119 STTVR-AFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
           +       L V       P    + P N +        L C A  +PP    W+ NG   
Sbjct: 189 ARRSDSVILNVLY----GPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQ 244

Query: 178 P-----------PEDTRI----------NVSSSGSLQIDVLRD---DFRAEPKDTRVASG 213
                         ++             ++ +    I V  +    F        V   
Sbjct: 245 QSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDE 304

Query: 214 ETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
           +   L C  P+ Q   T  W  N Q   L  S R+ +  D
Sbjct: 305 DAVALTC-EPEIQN-TTYLWWVNNQ--SLPVSPRLQLSND 340

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  147 bits (373), Expect = 2e-40
 Identities = 48/277 (17%), Positives = 78/277 (28%), Gaps = 39/277 (14%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERE-TKPALLTVHAPPS--FVVRPQDQKVGLNGIASFQ 57
            I  +  ++ G Y C   N       T    +TV+A P   F+       V      +  
Sbjct: 251 FIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALT 310

Query: 58  CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG-TLRIQGVQKEDAGFFVCSALSV 116
           C  E     +  W      + +        L ++ +  TL +  V + D G + C   + 
Sbjct: 311 CEPEIQN-TTYLWWVNNQSLPV-----SPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNE 364

Query: 117 AGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNS 176
                      V       P    + PS           L C A  +PP    W  +GN 
Sbjct: 365 LSVDHSDP---VILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNI 421

Query: 177 LPPEDT-RIN--------------------VSSSGSLQIDVLRDD---FRAEPKDTRVAS 212
                   I+                     S +    I V  +      +      V  
Sbjct: 422 QQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVED 481

Query: 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVS 249
            +     C  P+ Q   T  W  NGQ + +    ++S
Sbjct: 482 KDAVAFTC-EPEAQN-TTYLWWVNGQSLPVSPRLQLS 516

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  137 bits (345), Expect = 1e-36
 Identities = 34/206 (16%), Positives = 63/206 (30%), Gaps = 27/206 (13%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA----PPSFVVRPQDQKVGLNGIASFQ 57
           I+ + + + G Y C   N          + T+      P   +     + V      +F 
Sbjct: 430 ISNITEKNSGLYTCQANNSASGHSRT-TVKTITVSAELPKPSISSNNSKPVEDKDAVAFT 488

Query: 58  CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSALSV 116
           C  E     +  W   G  +          L ++    TL +  V + DA  +VC   + 
Sbjct: 489 CEPEAQN-TTYLWWVNGQSLP-----VSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNS 542

Query: 117 AGS-TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGN 175
             +  +    L V       P    + P + +    +   L C +  +P P   W  NG 
Sbjct: 543 VSANRSDPVTLDVLY----GPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGI 598

Query: 176 SLPPEDTRINVSSSGSLQI-DVLRDD 200
                        +  L I  +  ++
Sbjct: 599 PQ---------QHTQVLFIAKITPNN 615

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  123 bits (311), Expect = 5e-32
 Identities = 40/256 (15%), Positives = 66/256 (25%), Gaps = 57/256 (22%)

Query: 31  LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAY----- 85
           LT+ + P  V   ++                   L    W +            Y     
Sbjct: 2   LTIESTPFNVAEGKE--------VLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQ 53

Query: 86  ---------GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP 136
                    G   +    +L IQ + + D GF+    +         A  Q     + P 
Sbjct: 54  QATPGPAYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNE-EATGQFRVYPELPK 112

Query: 137 PIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-D 195
           P +    +++ +         C+          W+ N  SLP        + + +L + +
Sbjct: 113 PSISS-NNSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFN 170

Query: 196 VLRDD------------------------------FRAEPKDTRVASGETALLECGPPKG 225
           V R+D                                  P +T   SGE   L C     
Sbjct: 171 VTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAA-S 229

Query: 226 QPEPTLHWKKNGQFID 241
            P     W  NG F  
Sbjct: 230 NPPAQYSWFVNGTFQQ 245

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  104 bits (261), Expect = 2e-25
 Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 14/129 (10%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTV-HAPPSFVVRPQDQKVGLNGIASFQCVA 60
           +  V ++D   Y C +QN V    + P  L V + P + ++ P D         +  C +
Sbjct: 524 LFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHS 583

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
             +P P   W   G                     L I  +   + G + C   ++A   
Sbjct: 584 ASNPSPQYSWRINGIPQ-------------QHTQVLFIAKITPNNNGTYACFVSNLATGR 630

Query: 121 TVRAFLQVT 129
                  +T
Sbjct: 631 NNSIVKSIT 639

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  173 bits (441), Expect = 9e-52
 Identities = 64/293 (21%), Positives = 102/293 (34%), Gaps = 46/293 (15%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRP-QDQKVGLNGIASFQC- 58
                 +  EG+YQC+ +N  G   +    L V   P +         V      + QC 
Sbjct: 80  RSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCN 139

Query: 59  VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDA-GFFVCSALSVA 117
              G P P +FW     + +    +    +     G L    V  +D    + C+A    
Sbjct: 140 PPPGLPSPVIFWMSSSMEPI--TQD--KRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHF 195

Query: 118 GSTTVR---AFLQVTS---VEDTPPPIV--QVGPSNQTLPLHSVAFLPCQAVGSPPPHIR 169
             T  +     L+V +   V +  P  +  Q   S+Q +       L C A G P P I 
Sbjct: 196 THTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIA 255

Query: 170 WYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD---------------------------- 200
           WYK G  LP +  +   + + +L+I +V  +D                            
Sbjct: 256 WYKKGGDLPSDKAKF-ENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPY 314

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
           +  EPK+  +A GE   L C    G P+PT+ W  NG+ +          +  
Sbjct: 315 WLDEPKNLILAPGEDGRLVC-RANGNPKPTVQWMVNGEPLQSAPPNPNREVAG 366

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  145 bits (368), Expect = 4e-41
 Identities = 48/215 (22%), Positives = 75/215 (34%), Gaps = 25/215 (11%)

Query: 1   MITEVKKSD-EGKYQCYVQNMVGE--RETKPALLTVH-------APPSFVV---RPQDQK 47
             + V   D +  Y C  +       ++  P  L V          PSF+        Q 
Sbjct: 174 YFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQM 233

Query: 48  VGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAG 107
           V        +C+A G P P + W ++G  +   P +            LRI  V +ED+G
Sbjct: 234 VLRGMDLLLECIASGVPTPDIAWYKKGGDL---PSD--KAKFENFNKALRITNVSEEDSG 288

Query: 108 FFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH 167
            + C A +  GS      ++V +      P     P N  L       L C+A G+P P 
Sbjct: 289 EYFCLASNKMGSIRHTISVRVKA-----APYWLDEPKNLILAPGEDGRLVCRANGNPKPT 343

Query: 168 IRWYKNGNSLPPEDTRINVS-SSGSLQI-DVLRDD 200
           ++W  NG  L       N   +  ++   D     
Sbjct: 344 VQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISS 378

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  136 bits (344), Expect = 1e-37
 Identities = 52/272 (19%), Positives = 84/272 (30%), Gaps = 57/272 (20%)

Query: 28  PALLTVHAPPSFVVRP-QDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYG 86
                +  PP+   +  +D  V        +C A+G+P PS  WT+      +       
Sbjct: 8   SIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVS 67

Query: 87  HLHVTQEGTLRIQ----GVQKEDAGFFVCSALSVAGSTTVR-AFLQVTSVEDTPPPIVQV 141
                + GTL I     G  +E  G + C A +  G+       LQV+      P   + 
Sbjct: 68  MRR--RSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVS----KSPLWPKE 121

Query: 142 GPSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRD 199
                 +   +   L C    G P P I W  +      +D R++   +G L   +V+  
Sbjct: 122 NLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQ 181

Query: 200 DFRAE------------------------------------------PKDTRVASGETAL 217
           D + +                                               V  G   L
Sbjct: 182 DMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLL 241

Query: 218 LECGPPKGQPEPTLHWKKNGQFIDLESSKRVS 249
           LEC    G P P + W K G  +  + +K  +
Sbjct: 242 LEC-IASGVPTPDIAWYKKGGDLPSDKAKFEN 272

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  131 bits (330), Expect = 1e-35
 Identities = 31/131 (23%), Positives = 49/131 (37%), Gaps = 4/131 (3%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
            IT V + D G+Y C   N +G        + V A P ++  P++  +         C A
Sbjct: 278 RITNVSEEDSGEYFCLASNKMGSIRHT-ISVRVKAAPYWLDEPKNLILAPGEDGRLVCRA 336

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
            G+P P+V W   G  +   P N           T+  +  Q      + C+  +  G  
Sbjct: 337 NGNPKPTVQWMVNGEPLQSAPPNPN---REVAGDTIIFRDTQISSRAVYQCNTSNEHGYL 393

Query: 121 TVRAFLQVTSV 131
              AF+ V  V
Sbjct: 394 LANAFVSVLDV 404

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  102 bits (256), Expect = 4e-25
 Identities = 31/157 (19%), Positives = 49/157 (31%), Gaps = 38/157 (24%)

Query: 134 TPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP-EDTRINVS-SSGS 191
            PP I +    +  +       + C+A G+P P   W +N       +D R+++   SG+
Sbjct: 15  QPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGT 74

Query: 192 LQID-----------------------------------VLRDDFRAEPKDTRVASGETA 216
           L ID                                         +       V  G   
Sbjct: 75  LVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPL 134

Query: 217 LLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
            L+C PP G P P + W  +     +   KRVS   +
Sbjct: 135 TLQCNPPPGLPSPVIFWMSSSMEP-ITQDKRVSQGHN 170

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  165 bits (420), Expect = 6e-49
 Identities = 51/282 (18%), Positives = 82/282 (29%), Gaps = 43/282 (15%)

Query: 6   KKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE---G 62
           ++     Y C  +N  G   ++   +       +      + V     A  +C+      
Sbjct: 73  QEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVA 132

Query: 63  SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDA-GFFVCSALSVAGSTT 121
             +  V W  +  +         G   V   G L I+ V  ED    + C         T
Sbjct: 133 DFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGET 192

Query: 122 VR---AFLQVTS--VEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNS 176
                    V +  +  + P    +      L +     L C A G P P  RWYK    
Sbjct: 193 RLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEG 252

Query: 177 LPPEDTRI----NVSSSGSLQI-DVLRDD----------------------------FRA 203
              +   +        SG+L I D + +D                             + 
Sbjct: 253 TTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI 312

Query: 204 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS 245
           +P    V  G  A+  C    G P  T+ W K+G+ I    S
Sbjct: 313 DPPTQTVDFGRPAVFTC-QYTGNPIKTVSWMKDGKAIGHSES 353

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  152 bits (385), Expect = 9e-44
 Identities = 49/211 (23%), Positives = 77/211 (36%), Gaps = 24/211 (11%)

Query: 1   MITEVKKSD-EGKYQCYVQNMVG--ERETKPALLTVHAPPSFVVRP-------QDQKVGL 50
            I EV   D    YQC  ++ +    R +      V   P     P       +  ++ +
Sbjct: 167 HIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMV 226

Query: 51  NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFV 110
               S  C A+G P PS  W +                     GTL I+    ED+G ++
Sbjct: 227 AHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYL 286

Query: 111 CSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRW 170
           C   +  G  +V   L VT+     P   ++ P  QT+     A   CQ  G+P   + W
Sbjct: 287 CVVNNSVGGESVETVLTVTA-----PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSW 341

Query: 171 YKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
            K+G ++          S   L+I  V ++D
Sbjct: 342 MKDGKAIGH--------SESVLRIESVKKED 364

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  120 bits (302), Expect = 9e-32
 Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 13/128 (10%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
           +I +    D GKY C V N VG    +  +LTV AP S  + P  Q V     A F C  
Sbjct: 273 IIKDAVVEDSGKYLCVVNNSVGGESVE-TVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQY 331

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
            G+P+ +V W ++G  +               E  LRI+ V+KED G + C   +   S 
Sbjct: 332 TGNPIKTVSWMKDGKAI------------GHSESVLRIESVKKEDKGMYQCFVRNDRESA 379

Query: 121 TVRAFLQV 128
              A L++
Sbjct: 380 EASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  115 bits (288), Expect = 1e-29
 Identities = 42/269 (15%), Positives = 82/269 (30%), Gaps = 64/269 (23%)

Query: 36  PPSFVVRPQDQ-KVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
            P F+  P ++     +  A  +C A G+P+P + W +     +    +  G   ++ +G
Sbjct: 3   GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVG---DVPGLRQISSDG 59

Query: 95  TLRIQGVQKED------AGFFVCSALSVAGS-TTVRAFLQVTSVEDTPPPIVQVGPSNQT 147
            L     + ED      A  + C A +  GS  +    ++            +   + + 
Sbjct: 60  KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVV-----AQYYEADVNKEH 114

Query: 148 LPLHSVAFLPCQA---VGSPPPHIRWYKNGNSLP----PEDTRINVSSSGSLQI-DVLRD 199
           +   + A + C     V      + W+ +           D +  V  SG L I +V  +
Sbjct: 115 VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPE 174

Query: 200 DFRAE---------------------------------------PKDTRVASGETALLEC 220
           D                                            K   +    T  L C
Sbjct: 175 DGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLC 234

Query: 221 GPPKGQPEPTLHWKKNGQFIDLESSKRVS 249
            P +G P P+  W K  +    + +  ++
Sbjct: 235 -PAQGFPAPSFRWYKFIEGTTRKQAVVLN 262

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 86.9 bits (215), Expect = 1e-19
 Identities = 23/161 (14%), Positives = 46/161 (28%), Gaps = 42/161 (26%)

Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNS-LPPEDTRINVSSSGSLQ 193
            P  ++   +       + A + C+A G+P P I W ++  + +        +SS G L 
Sbjct: 3   GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62

Query: 194 IDVLR------------------------------------DDFRAEPKDTRVASGETAL 217
               R                                      + A+     V  G +A+
Sbjct: 63  FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAV 122

Query: 218 LECGPPK--GQPEPTLHWKKNGQFIDL---ESSKRVSILGD 253
           ++C  P         + W  + +       E   +  +L  
Sbjct: 123 IKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS 163

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  162 bits (411), Expect = 3e-47
 Identities = 32/293 (10%), Positives = 75/293 (25%), Gaps = 40/293 (13%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
             +        Y    ++           L   +    V      +V ++   + Q + +
Sbjct: 19  NNDSSVGKSSSYPMVSESPED----LGCALRPQSSG-TVYEAAAVEVDVSASITLQVLVD 73

Query: 62  GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
                S  W  + S +       +  L      ++ I  + +  AG ++    S A + T
Sbjct: 74  APGNISCLWVFKHSSL---NCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYT 130

Query: 122 VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP-E 180
           +   + + +       +  +         +  A L C +   P P + W    +     +
Sbjct: 131 ILFTVSIRN-----TLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDSQGESCK 184

Query: 181 DTRINVSSSGSLQID-------------------------VLRDDFRAEPKDTRVASGET 215
           +    V       +                           L    +       +  GE 
Sbjct: 185 EESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEP 244

Query: 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSV 268
             + C          L W+   + ++  +   +S         R   +   SV
Sbjct: 245 LWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSV 297

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  142 bits (360), Expect = 8e-40
 Identities = 37/275 (13%), Positives = 79/275 (28%), Gaps = 52/275 (18%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
           +I ++ ++  G+Y  ++Q+      T    +++     + +R    +  +    +  C++
Sbjct: 106 VILKMTETQAGEYLLFIQSEATN-YTILFTVSIRNTLLYTLRRPYFRK-MENQDALVCIS 163

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
           E  P P V W    SQ       +     V ++    +  +   D     C A +  G  
Sbjct: 164 ESVPEPIVEWVLCDSQGESCKEESPA---VVKKEEKVLHELFGTD---IRCCARNELGRE 217

Query: 121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPP 179
             R F     ++    P          L +    ++ C+AV  +    + W     +L  
Sbjct: 218 CTRLFT----IDLNQTPQTT--LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEE 271

Query: 180 E--------DTRINVSSSGSLQI-DVLRDD---------------------------FRA 203
                     T   +       +  V R+D                              
Sbjct: 272 GNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATN 331

Query: 204 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 238
             +D  +   E         K  P+    W  + +
Sbjct: 332 SSEDYEIDQYEEFCFSV-RFKAYPQIRCTWTFSRK 365

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  116 bits (292), Expect = 3e-30
 Identities = 25/203 (12%), Positives = 59/203 (29%), Gaps = 19/203 (9%)

Query: 5   VKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA-EGS 63
           + +      +C  +N +G   T+  L T+    +         + +      +C A   +
Sbjct: 198 LHELFGTDIRCCARNELGRECTR--LFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVN 255

Query: 64  PLPSVFWTQEGSQVL---MFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSALSVAGS 119
               + W  E   +     F  + Y             +  V + D G++ CS+      
Sbjct: 256 HGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ 315

Query: 120 TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPL--HSVAFLPCQAVGSPPPHIRWYKNGNSL 177
           +   A + +          +    S++   +  +       +    P     W  +  S 
Sbjct: 316 S---ALVTIVE-----KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF 367

Query: 178 PPEDTRINVSSSGSLQIDVLRDD 200
           P E  +  + +  S+        
Sbjct: 368 PCE--QKGLDNGYSISKFCNHKH 388

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 96.3 bits (239), Expect = 7e-23
 Identities = 18/142 (12%), Positives = 35/142 (24%), Gaps = 16/142 (11%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQK--VGLNGIASFQC 58
            ++ V ++D G Y C       +     AL+T+            +   +       F  
Sbjct: 293 FVSSVARNDTGYYTCSSSKHPSQ----SALVTIVEKGFINATNSSEDYEIDQYEEFCFSV 348

Query: 59  VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
             +  P     WT                  +    ++      K   G ++  A +   
Sbjct: 349 RFKAYPQIRCTWTFSRKSFPC------EQKGLDNGYSISKFCNHKHQPGEYIFHAENDDA 402

Query: 119 STTVRAFLQVTSVEDTPPPIVQ 140
             T    L + S          
Sbjct: 403 QFTKMFTLNIRS----GTKHHH 420

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  146 bits (371), Expect = 9e-44
 Identities = 37/167 (22%), Positives = 58/167 (34%), Gaps = 5/167 (2%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
           +  +F      Q+      A   C    SP P+V W     +V     N      +    
Sbjct: 1   SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN---RFAMLANN 57

Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVA 154
            L+I  + K D G + C     A        + V  V   P   +     N T       
Sbjct: 58  NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI-VNVPPAISMPQKSFNATAERGEEM 116

Query: 155 FLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
              C+A GSP P I W++NG  +   +  I   S+  L + +++  D
Sbjct: 117 TFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSD 163

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  114 bits (287), Expect = 3e-31
 Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 7/131 (5%)

Query: 1   MITEVKKSDEGKYQCYVQNMV-GERETKPALLTVHAPPSFVV--RPQDQKVGLNGIASFQ 57
            I  + KSDEG Y+C  +    GE + +  ++ V+ PP+  +  +  +         +F 
Sbjct: 60  QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS 119

Query: 58  CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117
           C A GSP P++ W + G  +     N   ++       L ++ +   D G +VC A + A
Sbjct: 120 CRASGSPEPAISWFRNGKLI---EENEK-YILKGSNTELTVRNIINSDGGPYVCRATNKA 175

Query: 118 GSTTVRAFLQV 128
           G    +AFLQV
Sbjct: 176 GEDEKQAFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
           FR          GE A + C      P P + W  + + +   S  R ++L +
Sbjct: 5   FREVVSPQEFKQGEDAEVVC-RVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN 56

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  157 bits (397), Expect = 2e-43
 Identities = 44/218 (20%), Positives = 74/218 (33%), Gaps = 22/218 (10%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
           +     +    Y+C   N VG  E       V   P   ++P D +       S  C A+
Sbjct: 517 LVIQAANVSALYKCEAVNKVGRGERV-ISFHVTRGPEITLQP-DMQPTEQESVSLWCTAD 574

Query: 62  GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE------------------GTLRIQGVQK 103
            S   ++ W + G Q L                                   + ++    
Sbjct: 575 RSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASL 634

Query: 104 EDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS 163
           +D G +VC A             Q+T V +   P +     NQT  +     + C A G+
Sbjct: 635 QDQGDYVCLAQDRKTKKRHCVVRQLT-VLERVAPTITGNLENQTTSIGESIEVSCTASGN 693

Query: 164 PPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
           PPP I W+K+  +L  +   +    + +L I  V ++D
Sbjct: 694 PPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKED 731

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  141 bits (355), Expect = 8e-38
 Identities = 41/290 (14%), Positives = 68/290 (23%), Gaps = 55/290 (18%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP-----SFVVRPQDQKVGLNGIAS 55
            I +V  +D G Y+C+ +            +  +  P     S            N    
Sbjct: 89  TIPKVIGNDTGAYKCFYRETDLASVIY-VYVQDYRSPFIASVSDQHGVVYITENKNKTVV 147

Query: 56  FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
             C+   S L      +   +  +  GN    +    +    I       AG   C A  
Sbjct: 148 IPCLGSISNLNVSLCARYPEKRFVPDGN---RISWDSKKGFTIPSYMISYAGMVFCEAKI 204

Query: 116 VAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGN 175
              S     ++ V  V      +V        L +     L C A       I +     
Sbjct: 205 NDESYQSIMYIVVV-VGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYP 263

Query: 176 SLPPEDTRINV----------------------------------------SSSGSLQID 195
           S   +  ++                                          +   S  + 
Sbjct: 264 SSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 323

Query: 196 VLRDDF----RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID 241
           V    F               GE   +      G P P + W KNG  ++
Sbjct: 324 VHEKPFVAFGSGMESLVEATVGERVRIPA-KYLGYPPPEIKWYKNGIPLE 372

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  138 bits (348), Expect = 6e-37
 Identities = 50/301 (16%), Positives = 81/301 (26%), Gaps = 52/301 (17%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTV---HAPPSFVVRPQDQKVGLNGIASFQ 57
            I     S  G   C  +      ++   ++ V         +      ++ +       
Sbjct: 186 TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLN 245

Query: 58  CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG--------TLRIQGVQKEDAGFF 109
           C A       + +  E                 TQ G        TL I GV + D G +
Sbjct: 246 CTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLY 305

Query: 110 VCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR 169
            C+A S   +     F++V   E           S     +     +P + +G PPP I+
Sbjct: 306 TCAASSGLMTKKNSTFVRV--HEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIK 363

Query: 170 WYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD---------------------------- 200
           WYKNG  L        + +   L I +V   D                            
Sbjct: 364 WYKNGIPLES---NHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVP 420

Query: 201 -----FRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDP 254
                            G T  L C      P P  +HW    +        +   + +P
Sbjct: 421 PQIGEKSLISPVDSYQYGTTQTLTC-TVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNP 479

Query: 255 W 255
           +
Sbjct: 480 Y 480

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  129 bits (326), Expect = 5e-34
 Identities = 48/344 (13%), Positives = 91/344 (26%), Gaps = 99/344 (28%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGE-RETKPALLTVHAPPSFVVRPQDQK---VGLNGIASF 56
            I EV + D G Y   + N + + +++    L V+ PP    +               + 
Sbjct: 384 TIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTL 443

Query: 57  QCVAEGSPLP-SVFWTQEGSQV-------------------------------LMFPGNA 84
            C     P P  + W  +  +                                +    N 
Sbjct: 444 TCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQ 503

Query: 85  YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPS 144
           +  +    +    +       +  + C A++  G         VT       P + + P 
Sbjct: 504 FALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTR-----GPEITLQPD 558

Query: 145 NQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT---------------------- 182
            Q     SV+ L C A  S   ++ WYK G    P                         
Sbjct: 559 MQPTEQESVS-LWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMF 617

Query: 183 RINVSSSGSLQI-DVLRDD--------------------------------FRAEPKDTR 209
             + +    +++ +    D                                     ++  
Sbjct: 618 SNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQT 677

Query: 210 VASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
            + GE+  + C    G P P + W K+ + +  E S  V   G+
Sbjct: 678 TSIGESIEVSC-TASGNPPPQIMWFKDNETLV-EDSGIVLKDGN 719

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  122 bits (306), Expect = 2e-31
 Identities = 37/297 (12%), Positives = 67/297 (22%), Gaps = 46/297 (15%)

Query: 8   SDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPS 67
                + C             +L      P   ++     +  N      C  +      
Sbjct: 7   LAVALWLCVETRAASVGLPSVSL----DLPRLSIQKDILTIKANTTLQITCRGQ----RD 58

Query: 68  VFWTQEGSQVLMFPGNAYGHLH-VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL 126
           + W    +Q                   TL I  V   D G + C       ++ +  ++
Sbjct: 59  LDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYV 118

Query: 127 QVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNS-LPPEDTRIN 185
           Q            Q G    T   +    +PC    S        +       P+  RI+
Sbjct: 119 QDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRIS 178

Query: 186 VSSSGSLQI-DVLRDD--------------------------------FRAEPKDTRVAS 212
             S     I   +                                     +      ++ 
Sbjct: 179 WDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSV 238

Query: 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVL 269
           GE  +L C   + +    + +         +  K V+   D    S      F S L
Sbjct: 239 GEKLVLNC-TARTELNVGIDFNWEYPSSKHQHKKLVN--RDLKTQSGSEMKKFLSTL 292

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  119 bits (300), Expect = 1e-30
 Identities = 39/229 (17%), Positives = 67/229 (29%), Gaps = 16/229 (6%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVV---RPQDQKVGLNGIASFQC 58
           I  V +SD+G Y C   + +  ++     + VH  P            +  +        
Sbjct: 294 IDGVTRSDQGLYTCAASSGLMTKKNS-TFVRVHEKPFVAFGSGMESLVEATVGERVRIPA 352

Query: 59  VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
              G P P + W + G  +     N      +     L I  V + D G +     +   
Sbjct: 353 KYLGYPPPEIKWYKNGIPL---ESNHT----IKAGHVLTIMEVSERDTGNYTVILTNPIS 405

Query: 119 STTVRAFLQVTSVEDTPPPIVQ--VGPSNQTLPLHSVAFLPCQAVGSPPP-HIRWYKNGN 175
                  + +      PP I +  +     +    +   L C     PPP HI WY    
Sbjct: 406 KEKQSHVVSLVVYV--PPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLE 463

Query: 176 SLPPEDTRINVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPK 224
                +    VS +     +  R     +  +    +     L  G  K
Sbjct: 464 EECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNK 512

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  107 bits (269), Expect = 2e-26
 Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 7/137 (5%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPAL---LTVHAPPSFVVRPQDQKVGLNGIASFQC 58
           +      D+G Y C  Q+   ++         +     P+     ++Q   +       C
Sbjct: 629 LKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSC 688

Query: 59  VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
            A G+P P + W ++   ++       G +       L I+ V+KED G + C A SV G
Sbjct: 689 TASGNPPPQIMWFKDNETLV----EDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLG 744

Query: 119 STTVRAFLQVTSVEDTP 135
              V AF  +   ++  
Sbjct: 745 CAKVEAFFIIEGAQEKT 761

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 67.5 bits (164), Expect = 8e-13
 Identities = 19/194 (9%), Positives = 42/194 (21%), Gaps = 50/194 (25%)

Query: 98  IQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLP 157
           +Q         ++C     A        L          P + +     T+  ++   + 
Sbjct: 1   MQSKVLLAVALWLCVETRAASVGLPSVSLD--------LPRLSIQKDILTIKANTTLQIT 52

Query: 158 CQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG----SLQID------------------ 195
           C+  G       W  N +        +   S G    +L I                   
Sbjct: 53  CR--GQRDLDWLWPNNQSGSEQ-RVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETD 109

Query: 196 ----------------VLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQF 239
                           +     +           +T ++ C         +L  +   + 
Sbjct: 110 LASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKR 169

Query: 240 IDLESSKRVSILGD 253
             +    R+S    
Sbjct: 170 F-VPDGNRISWDSK 182

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQ 46
            I  V+K DEG Y C   +++G  + + A   +          +  
Sbjct: 723 TIRRVRKEDEGLYTCQACSVLGCAKVE-AFFIIEGAQEKTNLERTH 767

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  146 bits (369), Expect = 2e-43
 Identities = 41/174 (23%), Positives = 67/174 (38%), Gaps = 8/174 (4%)

Query: 31  LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV 90
           +T    P+F    Q   V     A+F+    G P+P V W ++G  +             
Sbjct: 1   MTTQ-APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFS 59

Query: 91  TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPL 150
                L I  V K ++G +   A + +G  T  A L V    +T PP       + T+  
Sbjct: 60  DGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLV--KAETAPPNFVQRLQSMTVRQ 117

Query: 151 HSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG---SLQI-DVLRDD 200
            S   L  +  G P P +++Y++G  +        +S  G   SL I +   +D
Sbjct: 118 GSQVRLQVRVTGIPTPVVKFYRDGAEIQS-SLDFQISQEGDLYSLLIAEAYPED 170

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  121 bits (306), Expect = 4e-34
 Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 12/134 (8%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVH---APPSFVVRPQDQKVGLNGIASFQ 57
            I  V K++ G+Y     N  G+  +  A L V    APP+FV R Q   V        Q
Sbjct: 66  TIPAVTKANSGRYSLKATNGSGQATST-AELLVKAETAPPNFVQRLQSMTVRQGSQVRLQ 124

Query: 58  CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSAL 114
               G P P V + ++G+++      +     ++QEG   +L I     ED+G +  +A 
Sbjct: 125 VRVTGIPTPVVKFYRDGAEI-----QSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNAT 179

Query: 115 SVAGSTTVRAFLQV 128
           +  G  T  A L V
Sbjct: 180 NSVGRATSTAELLV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
           F    +   V  G TA  E     G P P + W ++GQ I   +   V I    
Sbjct: 8   FTQPLQSVVVLEGSTATFEA-HISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  146 bits (369), Expect = 3e-43
 Identities = 49/177 (27%), Positives = 81/177 (45%), Gaps = 12/177 (6%)

Query: 32  TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
           T   PP  + +PQ+Q V + G+ASF C A G P PS+ W + G +V         +  + 
Sbjct: 2   TGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSR---YTVLE 58

Query: 92  QEGTLRIQGVQ----KEDAGFFVCSALSVAGST-TVRAFLQVTSVEDTP--PPIVQVGPS 144
           Q G + I  ++      D   + C A +  G   +  A L +   + TP   P++  GP 
Sbjct: 59  QPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPG 118

Query: 145 NQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
            + + +     + C+A+G+P P+I W KN   +   + R      G LQI +   +D
Sbjct: 119 TRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY-SLKDGFLQIENSREED 174

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  108 bits (272), Expect = 8e-29
 Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 19/155 (12%)

Query: 1   MITEVKK-SDEGKYQCYVQNMVGERETKPALLTVH-------APPSFVVRPQDQKVGLNG 52
            I  V+   D+  Y+C  +N VG+  +  A LT++         P     P  + + +  
Sbjct: 67  RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGH 126

Query: 53  IASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 112
                C A G+P P+++W +  ++V M         +  ++G L+I+  ++ED G + C 
Sbjct: 127 TVLMTCKAIGNPTPNIYWIKNQTKVDMSNP-----RYSLKDGFLQIENSREEDQGKYECV 181

Query: 113 ALSVAGSTTVRA-FLQVTSVEDTPPPIVQVGPSNQ 146
           A +  G+   +A  L V         +      + 
Sbjct: 182 AENSMGTEHSKATNLYVKV-----RRVGTKHHHHH 211

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 97.2 bits (242), Expect = 2e-24
 Identities = 38/160 (23%), Positives = 51/160 (31%), Gaps = 45/160 (28%)

Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRI----------- 184
           PP +   P NQ + +  VA   C A G PPP I W KNG  +    +R            
Sbjct: 6   PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 65

Query: 185 -------------------------NVSSSGSLQIDVLRDD------FRAEPKDTRVASG 213
                                     VS+  +L I                P    +  G
Sbjct: 66  LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVG 125

Query: 214 ETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
            T L+ C    G P P ++W KN   +D+  S     L D
Sbjct: 126 HTVLMTC-KAIGNPTPNIYWIKNQTKVDM--SNPRYSLKD 162

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  142 bits (360), Expect = 4e-42
 Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 11/170 (6%)

Query: 33  VHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
           +   P      +     +  +A+F C  E  P P + WT+    + +F         + +
Sbjct: 4   LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDT----RYSIRE 59

Query: 93  EG-TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLH 151
            G  L I  V+  D G + C+A +  G            +     P +   P N  +   
Sbjct: 60  NGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKM----KPKITRPPINVKIIEG 115

Query: 152 SVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
             A LPC  +G+P P + W K  ++L   ++RI V  SGSL+I +V ++D
Sbjct: 116 LKAVLPCTTMGNPKPSVSWIKGDSALRE-NSRIAVLESGSLRIHNVQKED 164

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  127 bits (322), Expect = 2e-36
 Identities = 41/129 (31%), Positives = 56/129 (43%), Gaps = 6/129 (4%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
            I  V+ SD+G Y C   N VG        L V   P     P + K+     A   C  
Sbjct: 65  TILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTT 124

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS- 119
            G+P PSV W +  S +          + V + G+LRI  VQKEDAG + C A +  G+ 
Sbjct: 125 MGNPKPSVSWIKGDSAL-----RENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTA 179

Query: 120 TTVRAFLQV 128
            +    L+V
Sbjct: 180 YSKLVKLEV 188

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  109 bits (273), Expect = 3e-29
 Identities = 30/149 (20%), Positives = 49/149 (32%), Gaps = 34/149 (22%)

Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGS-LQI 194
            P++          +  VA   C     P P I W +N   +   DTR ++  +G  L I
Sbjct: 7   APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTI 66

Query: 195 -DVLRDD-----------------------------FRAEPKDTRVASGETALLECGPPK 224
             V   D                                 P + ++  G  A+L C    
Sbjct: 67  LSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPC-TTM 125

Query: 225 GQPEPTLHWKKNGQFIDLESSKRVSILGD 253
           G P+P++ W K      L  + R+++L  
Sbjct: 126 GNPKPSVSWIKGDS--ALRENSRIAVLES 152

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAP 36
            I  V+K D G+Y+C  +N +G   +K   L V   
Sbjct: 156 RIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVF 191

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  144 bits (364), Expect = 2e-41
 Identities = 34/169 (20%), Positives = 54/169 (31%), Gaps = 4/169 (2%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
            P F    ++  V     A+  C   G P P V W ++G +++                 
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 96  LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAF 155
           L I  V  +DA  +   A +  GS +  A L+V        P    G          V  
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123

Query: 156 LPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGS---LQID-VLRDD 200
           +     G P P I W K  + +        + +      +  + V R D
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKD 172

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 98.7 bits (246), Expect = 3e-24
 Identities = 38/147 (25%), Positives = 54/147 (36%), Gaps = 12/147 (8%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAP-----PSFVVRPQDQKVGLNGIASF 56
           I  V   D   YQ    N  G      A L V  P     P  +            + S 
Sbjct: 66  IASVTDDDATVYQVRATNQGGSVSGT-ASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSI 124

Query: 57  QCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT--LRIQGVQKEDAGFFVCSAL 114
           +    G P P + W +    +     N +  + VT+  T  +   GV+++DAGF+V  A 
Sbjct: 125 KIPFSGKPDPVITWQKGQDLI---DNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181

Query: 115 SVAGSTTVRAFLQVTSVEDTPPPIVQV 141
           +  G       L V  V D PP  V+V
Sbjct: 182 NRFGIDQKTVELDVADVPD-PPRGVKV 207

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 200 DFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 246
            F+ E ++  V     A L C    G P+P + W + G+ I  +  K
Sbjct: 6   HFKEELRNLNVRYQSNATLVC-KVTGHPKPIVKWYRQGKEIIADGLK 51

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  140 bits (355), Expect = 4e-41
 Identities = 50/181 (27%), Positives = 77/181 (42%), Gaps = 16/181 (8%)

Query: 32  TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
           T   PP F   P DQ     G+ASF C A G P P + W ++G +V          +   
Sbjct: 2   TGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQR----FEVIEF 57

Query: 92  QEGT---LRIQGVQ-KEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTP--PPIVQVGPSN 145
            +G+   LRIQ ++   D   + C A +  G  +V   L V   +  P   P + +GP  
Sbjct: 58  DDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQL 117

Query: 146 QTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED-----TRINVSSSGSLQI-DVLRD 199
           + +     A + C A G+P P I W+K+   +   +      ++   S G+LQI      
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEES 177

Query: 200 D 200
           D
Sbjct: 178 D 178

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  112 bits (283), Expect = 2e-30
 Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 11/145 (7%)

Query: 1   MITEVK-KSDEGKYQCYVQNMVGERETKPALLTVHA-------PPSFVVRPQDQKVGLNG 52
            I  ++   DE  Y+C   N VGE       LTV          P+  + PQ + V    
Sbjct: 66  RIQPLRTPRDEAIYECVASNNVGEISVS-TRLTVLREDQIPRGFPTIDMGPQLKVVERTR 124

Query: 53  IASFQCVAEGSPLPSVFWTQEGSQVLMFPGNA-YGHLHVTQEGTLRIQGVQKEDAGFFVC 111
            A+  C A G+P P + W ++   V     N     L     G L+I+  ++ D G + C
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYEC 184

Query: 112 SALSVAGST-TVRAFLQVTSVEDTP 135
            A + AG+  +  A L V   +   
Sbjct: 185 VATNSAGTRYSAPANLYVRGTKHHH 209

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 91.4 bits (227), Expect = 2e-22
 Identities = 37/162 (22%), Positives = 53/162 (32%), Gaps = 43/162 (26%)

Query: 133 DTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGS- 191
           +TPP   +  P +QT     VA   CQA G P P I W K G  +  +   +     GS 
Sbjct: 4   ETPPRFTRT-PVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62

Query: 192 --LQIDVLRD-------------------------------------DFRAEPKDTRVAS 212
             L+I  LR                                           P+   V  
Sbjct: 63  SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVER 122

Query: 213 GETALLECGPPKGQPEPTLHWKKNGQFIDL-ESSKRVSILGD 253
             TA + C    G P+P + W K+   +D   ++ R+  L  
Sbjct: 123 TRTATMLC-AASGNPDPEITWFKDFLPVDTSNNNGRIKQLRS 163

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  142 bits (360), Expect = 1e-40
 Identities = 42/229 (18%), Positives = 69/229 (30%), Gaps = 33/229 (14%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
           ITE  K D G Y+  +++  G+ +++   L   A    ++    +          Q  AE
Sbjct: 65  ITEFSKKDAGIYEVILKDDRGKDKSR-LKLVDEAFKELMMEVCKKIALSATDLKIQSTAE 123

Query: 62  GSPL----------PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
           G  L            V W+  GS +     +        ++  L+I      D G +V 
Sbjct: 124 GIQLYSFVTYYVEDLKVNWSHNGSAIR--YSDRVKTGVTGEQIWLQINEPTPNDKGKYVM 181

Query: 112 SALSVAGSTTVRAFLQVTS----------------VEDTPPPIVQVGPSNQTLPLHSVAF 155
                         L   +                 E     ++   P   T+       
Sbjct: 182 ELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALN 241

Query: 156 LPCQAVGSPPPHIRWYKNGNSLPPED---TRINVSSSGSLQI-DVLRDD 200
           L C   G PPP + W KN  +L  +D    +     +    I  V   D
Sbjct: 242 LTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTAD 290

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  121 bits (306), Expect = 8e-33
 Identities = 44/285 (15%), Positives = 78/285 (27%), Gaps = 72/285 (25%)

Query: 31  LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLH 89
           +     P FV     + V        +C          + W ++  ++      +    H
Sbjct: 2   IDPFTGPHFVEYLSWE-VTGECNVLLKCKVANIKKETHIVWYKDEREI------SVDEKH 54

Query: 90  VTQEG--TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVED-TPPPIVQVGPSNQ 146
             ++G  TL I    K+DAG +        G    R  L   + ++       ++  S  
Sbjct: 55  DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSAT 114

Query: 147 TLPLHSVA----FLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG---SLQI-DVLR 198
            L + S A                 + W  NG+++   D R+    +G    LQI +   
Sbjct: 115 DLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSD-RVKTGVTGEQIWLQINEPTP 173

Query: 199 DD-------------------------------------------------FRAEPKDTR 209
           +D                                                     P    
Sbjct: 174 NDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVT 233

Query: 210 VASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
           +  G+   L C    G P P + W KN +   L S    ++  + 
Sbjct: 234 IQEGKALNLTC-NVWGDPPPEVSWLKNEK--ALASDDHCNLKFEA 275

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 96.1 bits (239), Expect = 2e-23
 Identities = 24/148 (16%), Positives = 42/148 (28%), Gaps = 21/148 (14%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERET--------------------KPALLTVHAPPSFV 40
            I E   +D+GKY   + +     +                     + A+   +      
Sbjct: 167 QINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLG 226

Query: 41  VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQG 100
             P    +      +  C   G P P V W +   + L    +        +     I G
Sbjct: 227 GLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNE-KALASDDHCNLKFEAGRTAYFTING 285

Query: 101 VQKEDAGFFVCSALSVAGSTTVRAFLQV 128
           V   D+G +     +  GS T    + V
Sbjct: 286 VSTADSGKYGLVVKNKYGSETSDFTVSV 313

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  142 bits (360), Expect = 1e-40
 Identities = 43/240 (17%), Positives = 68/240 (28%), Gaps = 41/240 (17%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGE--------------------RETKPALLTVHAPPSFV 40
            +      D G Y C  +                          +           P + 
Sbjct: 64  QVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWT 123

Query: 41  ----VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTL 96
               +  +   V       F+C A G+P PS+ W + G +         G     Q+ +L
Sbjct: 124 RPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE-FRGEHRIGGIKLRHQQWSL 182

Query: 97  RIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFL 156
            ++ V   D G + C   +  GS      L V       P +    P+NQT  L S    
Sbjct: 183 VMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEF 242

Query: 157 PCQAVGSPPPHIRWYKNG---------------NSLPPEDTRINVSSSGSLQI-DVLRDD 200
            C+      PHI+W K+                  L              L + +V  +D
Sbjct: 243 HCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFED 302

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  124 bits (312), Expect = 2e-33
 Identities = 41/290 (14%), Positives = 72/290 (24%), Gaps = 69/290 (23%)

Query: 34  HAPPSFVVRPQDQKVGLNGIASFQCVAE-GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
             P     + +    G        C    G P+    W ++G+ +            +  
Sbjct: 6   EVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGL------VPSERVLVG 59

Query: 93  EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV-----------------TSVEDTP 135
              L++     ED+G + C            +                     T V+   
Sbjct: 60  PQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGA 119

Query: 136 PPIVQ---VGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT---RINVSSS 189
           P   +   +      +P  +     C A G+P P I W KNG     E            
Sbjct: 120 PYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQ 179

Query: 190 GSLQI-DVLRDD---------------------------------FRAEPKDTRVASGET 215
            SL +  V+  D                                     P +     G  
Sbjct: 180 WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSD 239

Query: 216 ALLECGPPKGQPEPTLHWKK----NGQFIDLESSKRVSILGDPWFDSRRS 261
               C       +P + W K    NG  +  + +  V++L     ++   
Sbjct: 240 VEFHC-KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDK 288

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  117 bits (295), Expect = 3e-31
 Identities = 35/156 (22%), Positives = 52/156 (33%), Gaps = 20/156 (12%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTV-----HAPPSFVVRPQDQKVGLNGIAS 55
           ++  V  SD G Y C V+N  G        L V     H P      P +Q   L     
Sbjct: 183 VMESVVPSDRGNYTCVVENKFGSIRQT-YTLDVLERSPHRPILQAGLPANQTAVLGSDVE 241

Query: 56  FQCVAEGSPLPSVFW-----------TQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKE 104
           F C       P + W             +G+  +     A  +    +   L +  V  E
Sbjct: 242 FHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFE 301

Query: 105 DAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQ 140
           DAG + C A +  G +   A+L V         +V+
Sbjct: 302 DAGEYTCLAGNSIGFSHHSAWLVVL---PAEEELVE 334

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  145 bits (368), Expect = 2e-40
 Identities = 33/293 (11%), Positives = 75/293 (25%), Gaps = 40/293 (13%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
             +        Y    ++     E     L   +    V      +V ++   + Q + +
Sbjct: 19  NNDSSVGKSSSYPMVSESP----EDLGCALRPQSSG-TVYEAAAVEVDVSASITLQVLVD 73

Query: 62  GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
                S  W  + S +       +  L      ++ I  + +  AG ++    S A + T
Sbjct: 74  APGNISCLWVFKHSSL---NCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYT 130

Query: 122 VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE- 180
           +   + + +       +  +         +  A L C +   P P + W    +      
Sbjct: 131 ILFTVSIRN-----TLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDSQGESCK 184

Query: 181 DTRINVSSSGSLQID-------------------------VLRDDFRAEPKDTRVASGET 215
           +    V       +                           L    +       +  GE 
Sbjct: 185 EESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEP 244

Query: 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSV 268
             + C          L W+   + ++  +   +S         R   +   SV
Sbjct: 245 LWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSV 297

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  132 bits (333), Expect = 2e-35
 Identities = 36/281 (12%), Positives = 80/281 (28%), Gaps = 52/281 (18%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
           +I ++ ++  G+Y  ++Q+      T    +++     + +R    +  +    +  C++
Sbjct: 106 VILKMTETQAGEYLLFIQSEATN-YTILFTVSIRNTLLYTLRRPYFRK-MENQDALVCIS 163

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
           E  P P V W    SQ       +   +          + + +       C A +  G  
Sbjct: 164 ESVPEPIVEWVLCDSQGESCKEESPAVV------KKEEKVLHELFGTDIRCCARNELGRE 217

Query: 121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVG-SPPPHIRWYKNGNSLPP 179
             R F    +++    P          L +    ++ C+AV  +    + W     +L  
Sbjct: 218 CTRLF----TIDLNQTPQTT--LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEE 271

Query: 180 ED--------TRINVSSSGSLQI-DVLRDD---------------------------FRA 203
            +        T   +       +  V R+D                              
Sbjct: 272 GNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATN 331

Query: 204 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES 244
             +D  +   E         K  P+    W  + +    E 
Sbjct: 332 SSEDYEIDQYEEFCFSV-RFKAYPQIRCTWTFSRKSFPCEQ 371

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  131 bits (331), Expect = 4e-35
 Identities = 42/297 (14%), Positives = 89/297 (29%), Gaps = 45/297 (15%)

Query: 5   VKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQC-VAEGS 63
           + +      +C  +N +G   T+   + ++  P   +     KVG       +C     +
Sbjct: 198 LHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEP--LWIRCKAVHVN 255

Query: 64  PLPSVFWTQEGSQVL---MFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSALSVAGS 119
               + W  E   +     F  + Y             +  V + D G++ CS+      
Sbjct: 256 HGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ 315

Query: 120 TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP 179
           + +       ++ +           +  +  +       +    P     W  +  S P 
Sbjct: 316 SAL------VTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPC 369

Query: 180 EDTRINVSSSGSLQI-DVLRDD-----FRAE-----------------PKDTRVASGETA 216
           E   ++  +  S+      +       F AE                 P+   +A    +
Sbjct: 370 EQKGLD--NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQV--LAEASAS 425

Query: 217 LLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALS 273
              C    G P P+  WKK     D   +    I    W + + +R +FG  + + +
Sbjct: 426 QASC-FSDGYPLPSWTWKKCS---DKSPNCTEEITEGVW-NRKANRKVFGQWVSSST 477

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  124 bits (313), Expect = 1e-32
 Identities = 30/222 (13%), Positives = 60/222 (27%), Gaps = 25/222 (11%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSF--VVRPQDQKVGLNGIASFQC 58
            ++ V ++D G Y C           + AL+T+            +D ++       F  
Sbjct: 293 FVSSVARNDTGYYTCSSSKHPS----QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSV 348

Query: 59  VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
             +  P     WT                  +    ++      K   G ++  A +   
Sbjct: 349 RFKAYPQIRCTWTFSRKSFPC------EQKGLDNGYSISKFCNHKHQPGEYIFHAENDDA 402

Query: 119 STTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLP 178
             T    L +       P ++            S +   C + G P P   W K  +  P
Sbjct: 403 QFTKMFTLNIRR----KPQVLAEA---------SASQASCFSDGYPLPSWTWKKCSDKSP 449

Query: 179 PEDTRINVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLEC 220
                I            +   + +        + +  L++C
Sbjct: 450 NCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKC 491

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 97.8 bits (243), Expect = 4e-23
 Identities = 23/159 (14%), Positives = 43/159 (27%), Gaps = 22/159 (13%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
                K   G+Y  + +N   +       L +   P  +             +   C ++
Sbjct: 382 KFCNHKHQPGEYIFHAENDDAQFTKM-FTLNIRRKPQVLAEASA--------SQASCFSD 432

Query: 62  GSPLPSVFWTQEGSQVLMFPG---------NAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 112
           G PLPS  W +   +                A   +      +  +   +        C 
Sbjct: 433 GYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCC 492

Query: 113 ALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLH 151
           A +  G++     L        P P +Q G +      H
Sbjct: 493 AYNSLGTSCETILLNSPG----PFPFIQDGGTKHHHHHH 527

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 71.7 bits (175), Expect = 3e-14
 Identities = 16/189 (8%), Positives = 40/189 (21%), Gaps = 41/189 (21%)

Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVA 154
             +        +  +   + S              ++       V    +   + + +  
Sbjct: 16  NHKNNDSSVGKSSSYPMVSESPEDLGC--------ALRPQSSGTV-YEAAAVEVDVSASI 66

Query: 155 FLPCQAVGSPPPHIRWYKNGNSLPPEDT-RINVSSSGSLQI-DVLRDD------------ 200
            L             W    +SL  +    +      S+ I  +                
Sbjct: 67  TLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEA 126

Query: 201 ----------------FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES 244
                           +       R    + A L C   +  PEP + W       +   
Sbjct: 127 TNYTILFTVSIRNTLLYTLRRPYFRKMENQDA-LVC-ISESVPEPIVEWVLCDSQGESCK 184

Query: 245 SKRVSILGD 253
            +  +++  
Sbjct: 185 EESPAVVKK 193

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 43.1 bits (101), Expect = 6e-05
 Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 1/46 (2%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQ 46
            +   +       +C   N +G       LL    P  F+     +
Sbjct: 477 TLNMSEAIKGFLVKCCAYNSLGTSCET-ILLNSPGPFPFIQDGGTK 521

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  136 bits (345), Expect = 7e-40
 Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 3/129 (2%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
            I      D G Y+C V    G +      + +     F   P  Q+      A   C  
Sbjct: 65  TIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDV 124

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
             S  P++ W  +G  V++          V     L+I+G++K D G + C    +A   
Sbjct: 125 VSSLPPTIIWKHKGRDVILKKD---VRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGE 181

Query: 121 TVRAFLQVT 129
                +QV 
Sbjct: 182 INFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  133 bits (335), Expect = 2e-38
 Identities = 33/170 (19%), Positives = 58/170 (34%), Gaps = 10/170 (5%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPL-PSVFWTQEGSQVLMFPGNAYGHLHVTQE- 93
                + P   ++ +     F C   G      + W     + L         +    + 
Sbjct: 2   VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61

Query: 94  GTLRIQGVQKEDAGFFVCSALSVAGS-TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHS 152
            TL I     +DAG + C   +  G+ +     +++         + +  P+ Q      
Sbjct: 62  STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF-----QKLMFKNAPTPQEFKEGE 116

Query: 153 VAFLPCQAVGSPPPHIRWYKNGNSLPP-EDTRINVSSSGSLQI-DVLRDD 200
            A + C  V S PP I W   G  +   +D R  V S+  LQI  + + D
Sbjct: 117 DAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTD 166

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  100 bits (251), Expect = 5e-26
 Identities = 35/154 (22%), Positives = 51/154 (33%), Gaps = 37/154 (24%)

Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPP-PHIRWYK-NGNSLPPEDTRINV----SSS 189
              V + PS   + +    F  CQ  G      I W+  NG  L P   RI+V      S
Sbjct: 2   VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61

Query: 190 GSLQI-DVLRDD-----------------------------FRAEPKDTRVASGETALLE 219
            +L I +   DD                             F+  P       GE A++ 
Sbjct: 62  STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIV 121

Query: 220 CGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
           C        PT+ WK  G+ + L+   R  +L +
Sbjct: 122 C-DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN 154

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  144 bits (364), Expect = 9e-40
 Identities = 55/316 (17%), Positives = 96/316 (30%), Gaps = 52/316 (16%)

Query: 1   MITEVKKS-DEGKYQCYVQNMVGERETKPALLTV----HAPPSFVVRPQDQKVGLNGIAS 55
           MI  VK++       C V        ++  +L V     A P   V      +      +
Sbjct: 171 MIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFT 230

Query: 56  FQCVAEGSPLP-SVFWTQEGSQVLM---FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
             C  +         W +E SQ  +   +    +G  +  ++ TL I   +  D+G F+C
Sbjct: 231 VTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMC 290

Query: 112 SALSVAGSTTVRAFLQVTSVEDTPPPIVQVGP---SNQTLPLHSVAFLPCQAVGSPPP-H 167
            A +  GS  V   L+V          + + P   +   +       L  +    P P H
Sbjct: 291 YANNTFGSANVTTTLEVVD-----KGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEH 345

Query: 168 IRWYKNGNSLPPE-------DTRINVSSSGSLQI-DVLRDD-----FRAE---------- 204
            +W     +   +       +   N+     L +  +   +     F             
Sbjct: 346 QQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAF 405

Query: 205 -------PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFD 257
                  P+          +L+C    G PEPT+ W          S+   S+L      
Sbjct: 406 NVYVNTKPEILTYDRLVNGMLQC-VAAGFPEPTIDWYFCPGTEQRCSA---SVLPVDVQT 461

Query: 258 SRRSRSIFGSVLGALS 273
              S   FG ++   S
Sbjct: 462 LNSSGPPFGKLVVQSS 477

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  117 bits (294), Expect = 5e-30
 Identities = 33/296 (11%), Positives = 73/296 (24%), Gaps = 53/296 (17%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
           +  + + ++ GKY C  ++ +         + V  P    +  +      +     +C  
Sbjct: 83  ITEKAEATNTGKYTCTNKHGLSNS----IYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPL 138

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQK-EDAGFFVCSALSVAGS 119
               + +        + L              +  + I+ V++        CS      S
Sbjct: 139 TDPEVTNYSLKGCQGKPLP----KDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKS 194

Query: 120 -TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP-HIRWYKNGNSL 177
             + +  L+V        P+V V  ++  L       + C         +  W +  +  
Sbjct: 195 VLSEKFILKVRPAFK-AVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQT 253

Query: 178 PPED-------TRINVSSSGSLQI-DVLRDD----------------------------- 200
             ++          N     +L I     +D                             
Sbjct: 254 KLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFI 313

Query: 201 --FRAEPKDTRVASGETALLECGPPKGQPEPTL-HWKKNGQFIDLESSKRVSILGD 253
             F        V  GE   L     +  P+P    W    +    +         +
Sbjct: 314 NIFPMINTTVFVNDGENVDLIV-EYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENE 368

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  112 bits (282), Expect = 2e-28
 Identities = 33/292 (11%), Positives = 64/292 (21%), Gaps = 62/292 (21%)

Query: 9   DEGKYQC----YVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSP 64
               + C     ++   G  +         +PPS      D  V +       C   G  
Sbjct: 6   GAWDFLCVLLLLLRVQTGSSQPS-VSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGF- 63

Query: 65  LPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA 124
              V WT E                         +  +  + G + C+      S ++  
Sbjct: 64  ---VKWTFEILDETNENKQ----------NEWITEKAEATNTGKYTCTN-KHGLSNSIYV 109

Query: 125 FLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRI 184
           F++        P  + +   +      +   + C        +           P+D R 
Sbjct: 110 FVRD-------PAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRF 162

Query: 185 NVSSSGSLQI-DVLRDD----------------------------------FRAEPKDTR 209
                  + I  V R                                             
Sbjct: 163 IPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYL 222

Query: 210 VASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRS 261
           +  GE   + C            WK+      L+        GD  ++ + +
Sbjct: 223 LREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQAT 274

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 95.5 bits (237), Expect = 2e-22
 Identities = 26/155 (16%), Positives = 43/155 (27%), Gaps = 22/155 (14%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
           +T +K ++ G Y   V N           + V+  P  +   +            QCVA 
Sbjct: 379 LTRLKGTEGGTYTFLVSNSDVNAAIA-FNVYVNTKPEILTYDRLVNG------MLQCVAA 431

Query: 62  GSPLPSVFWTQEGSQVL----------MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
           G P P++ W                  +   N+ G           I     +  G   C
Sbjct: 432 GFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVEC 491

Query: 112 SALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQ 146
            A +  G T+                  Q+ P + 
Sbjct: 492 KAYNDVGKTSAYFNFAFKG-----NNKEQIHPHHH 521

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 71.2 bits (174), Expect = 4e-14
 Identities = 29/170 (17%), Positives = 49/170 (28%), Gaps = 27/170 (15%)

Query: 104 EDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS 163
             A  F+C  L +    T  +   V+  E +PP I   G S+  + +     L C   G 
Sbjct: 5   RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIH-PGKSDLIVRVGDEIRLLCTDPGF 63

Query: 164 PPPHIRWYKNGNSLPPED-------TRINVSSSG------------SLQIDVLRDD-FRA 203
               ++W         E+        +   +++G            S+ + V        
Sbjct: 64  ----VKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFL 119

Query: 204 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
             +          L+ C      PE T +  K  Q   L    R      
Sbjct: 120 VDRSLYGKEDNDTLVRCPLTD--PEVTNYSLKGCQGKPLPKDLRFIPDPK 167

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  138 bits (348), Expect = 3e-39
 Identities = 36/215 (16%), Positives = 69/215 (32%), Gaps = 20/215 (9%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS-FVVRPQDQKVGLNGIASFQCVA 60
                  + G Y+C          T    L V  P   + +  Q+  V     A   C+ 
Sbjct: 55  TRNATFKNTGTYRCTELEDPMAGSTT-IHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLI 113

Query: 61  EGSPL-PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA-LSVAG 118
               L  SV   +EG + ++           +      I+  +  D+  +VC   ++   
Sbjct: 114 TDPALKDSVSLMREGGRQVLRKTV----YFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRE 169

Query: 119 STTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLP 178
           ST+   +L+V  V    PP +++ PS         A + C A  +        K G++  
Sbjct: 170 STSTGIWLKVNRVH-PEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKL 228

Query: 179 PEDTRINVS-----SSGSLQIDVLRDDFRAEPKDT 208
                 +          +L ++        + +D 
Sbjct: 229 EIPLNSDFQDNYYKKVRALSLN------AVDFQDA 257

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  123 bits (310), Expect = 1e-33
 Identities = 36/238 (15%), Positives = 54/238 (22%), Gaps = 51/238 (21%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
            P       +  V      + +CV+ GS    V W    S        + G        T
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYWTLDPESPG-------ST 52

Query: 96  LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAF 155
           L  +    ++ G + C+ L    + +    L V      P     +     T+     A 
Sbjct: 53  LTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKD----PAHSWNLLAQEVTVVEGQEAV 108

Query: 156 LPCQAVGSPP-PHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD------------- 200
           LPC          +   + G       T    S      I      D             
Sbjct: 109 LPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGR 168

Query: 201 --------------------FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 238
                                + EP       GE A + C              K G 
Sbjct: 169 ESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCS-ATNAEVGFNVILKRGD 225

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  108 bits (270), Expect = 6e-28
 Identities = 29/133 (21%), Positives = 46/133 (34%), Gaps = 5/133 (3%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVH----APPSFVVRPQDQKVGLNGIASF 56
           +I + K  D   Y C       E  +    L V+     PP   + P          A  
Sbjct: 147 IIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQI 206

Query: 57  QCVAEGSPLPSVFWTQEGSQVLMFPGNA-YGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
            C A  + +      + G   L  P N+ +   +  +   L +  V  +DAG + C A +
Sbjct: 207 VCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASN 266

Query: 116 VAGSTTVRAFLQV 128
             G+ T     QV
Sbjct: 267 DVGTRTATMNFQV 279

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 71.1 bits (174), Expect = 2e-14
 Identities = 17/141 (12%), Positives = 37/141 (26%), Gaps = 31/141 (21%)

Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRIN--------- 185
           P P+++       +       L C + GS    + W    +     D             
Sbjct: 3   PAPVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYWTLDPESPGSTLTTRNA 58

Query: 186 ------------------VSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQP 227
                              S++  L +      +    ++  V  G+ A+L C       
Sbjct: 59  TFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPAL 118

Query: 228 EPTLHWKKNGQFIDLESSKRV 248
           + ++   + G    L  +   
Sbjct: 119 KDSVSLMREGGRQVLRKTVYF 139

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  135 bits (341), Expect = 5e-39
 Identities = 50/180 (27%), Positives = 73/180 (40%), Gaps = 13/180 (7%)

Query: 29  ALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHL 88
           +L     PP  V  P D  V     A+  C AEG P P++ W + G +V     +   H 
Sbjct: 2   SLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR 61

Query: 89  HVTQEGTLRIQGV-----QKEDAGFFVCSALSVAGSTTVR-AFLQVTSVEDTPPPIVQVG 142
            +   G+L    +      + D G +VC A +  G      A L+V  +        Q  
Sbjct: 62  MLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL---RDDFRQ-N 117

Query: 143 PSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
           PS+  + +   A + CQ   G P P I W K+G+ L  +D RI     G L I    + D
Sbjct: 118 PSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERI-TIRGGKLMITYTRKSD 176

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  108 bits (271), Expect = 1e-28
 Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 13/148 (8%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA-PPSFVVRPQDQKVGLNGIASFQC- 58
           +     + DEG Y C  +N +GE  +  A L V      F   P D  V +   A  +C 
Sbjct: 75  VHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQ 134

Query: 59  VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
              G P P++ W ++GS +     +        + G L I   +K DAG +VC   ++ G
Sbjct: 135 PPRGHPEPTISWKKDGSPL-----DDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVG 189

Query: 119 STTVR-AFLQVTSVEDTPPPIVQVGPSN 145
                 A L V       P  V+   ++
Sbjct: 190 ERESEVAELTVLE----RPSFVK-AAAH 212

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  106 bits (266), Expect = 4e-28
 Identities = 51/163 (31%), Positives = 69/163 (42%), Gaps = 43/163 (26%)

Query: 131 VEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE----DTRINV 186
            ED PP IV+  PS+  +     A L C+A G P P I WYK G  +  +     +   +
Sbjct: 5   QEDFPPRIVEH-PSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63

Query: 187 SSSGSL------------------------------------QIDVLRDDFRAEPKDTRV 210
             SGSL                                    ++ +LRDDFR  P D  V
Sbjct: 64  LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMV 123

Query: 211 ASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
           A GE A++EC PP+G PEPT+ WKK+G    L+       +  
Sbjct: 124 AVGEPAVMECQPPRGHPEPTISWKKDGS--PLDDKDERITIRG 164

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 52.9 bits (127), Expect = 1e-08
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 190 GSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVS 249
           GSL+ +         P D  V+ GE A L C   +G+P PT+ W K G+ ++ +     S
Sbjct: 1   GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCK-AEGRPTPTIEWYKGGERVETDKDDPRS 59

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  131 bits (331), Expect = 9e-38
 Identities = 37/173 (21%), Positives = 56/173 (32%), Gaps = 3/173 (1%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
            P F    ++  V     A+  C   G P P V W ++G +++                 
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 96  LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAF 155
           L I  V  +DA  +   A +  GS +  A L+V        P    G          V  
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123

Query: 156 LPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEPKDT 208
           +     G P P I W K  + +   +    V  + S    V  +    E KD 
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDN-NGHYQVIVTRSFTSLVFPNG--VERKDA 173

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  112 bits (283), Expect = 1e-30
 Identities = 31/138 (22%), Positives = 44/138 (31%), Gaps = 15/138 (10%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAP-----PSFVVRPQDQKVGLNGIAS 55
           +I  V   D   YQ    N  G      A L V  P     P  +            + S
Sbjct: 65  IIASVTDDDATVYQVRATNQGGSVSGT-ASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123

Query: 56  FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLR----IQGVQKEDAGFFVC 111
            +    G P P + W +    +        GH  V    +        GV+++DAGF+V 
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLI--DNN---GHYQVIVTRSFTSLVFPNGVERKDAGFYVV 178

Query: 112 SALSVAGSTTVRAFLQVT 129
            A +  G       L V 
Sbjct: 179 CAKNRFGIDQKTVELDVA 196

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 97.1 bits (242), Expect = 1e-24
 Identities = 29/157 (18%), Positives = 48/157 (30%), Gaps = 41/157 (26%)

Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT--RINVSSSG--S 191
            P  +    N  +   S A L C+  G P P ++WY+ G  +  +    RI     G   
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 192 LQI-DVLRDD---------------------------------FRAEPKDTRVASGETAL 217
           L I  V  DD                                             GE   
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123

Query: 218 LECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
           ++  P  G+P+P + W+K    I  +++    ++   
Sbjct: 124 IKI-PFSGKPDPVITWQKGQDLI--DNNGHYQVIVTR 157

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  133 bits (337), Expect = 1e-37
 Identities = 32/208 (15%), Positives = 61/208 (29%), Gaps = 15/208 (7%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS-FVVRPQDQKVGLNGIASFQCVA 60
                  + G Y+C               L V  P   + V  Q+  V  +  A   C+ 
Sbjct: 55  TNNATFQNTGTYRCTEPGDPLGGSAA-IHLYVKDPARPWNVLAQEVVVFEDQDALLPCLL 113

Query: 61  EGSPL-PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA-LSVAG 118
               L   V   +   + LM   N       +      I   +   +  + CSA +    
Sbjct: 114 TDPVLEAGVSLVRVRGRPLMRHTN----YSFSPWHGFTIHRAKFIQSQDYQCSALMGGRK 169

Query: 119 STTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLP 178
             ++   L+V  V   PP +    P+         A + C A         + ++ N+  
Sbjct: 170 VMSISIRLKVQKVIPGPPALTL-VPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKL 228

Query: 179 PEDTRINVSSS-----GSLQI-DVLRDD 200
               + +  ++      +L +  V    
Sbjct: 229 AIPQQSDFHNNRYQKVLTLNLDQVDFQH 256

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  115 bits (288), Expect = 2e-30
 Identities = 29/252 (11%), Positives = 48/252 (19%), Gaps = 52/252 (20%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
           + P       +  V      + +CV  GS    V W          P   +         
Sbjct: 3   SIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGP-------PSPHWTLYSDGSSS 51

Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVA 154
            L       ++ G + C+        +    L V      P     V      +     A
Sbjct: 52  ILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKD----PARPWNVLAQEVVVFEDQDA 107

Query: 155 FLPCQAVGSPP-PHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD------------ 200
            LPC          +   +         T  + S      I                   
Sbjct: 108 LLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGG 167

Query: 201 ---------------------FRAEPKDTRVASGETALLECGPPKGQPEPTLH-WKKNGQ 238
                                    P +     GE A + C              + N  
Sbjct: 168 RKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCS-ASSVDVNFDVFLQHNNT 226

Query: 239 FIDLESSKRVSI 250
            + +        
Sbjct: 227 KLAIPQQSDFHN 238

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  105 bits (263), Expect = 8e-27
 Identities = 28/134 (20%), Positives = 44/134 (32%), Gaps = 5/134 (3%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTV----HAPPSFVVRPQDQKVGLNGIASF 56
            I   K      YQC       +  +    L V      PP+  + P +        A  
Sbjct: 147 TIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQI 206

Query: 57  QCVAEGSPLPSVFWTQEGSQVLMFPGNAYGH-LHVTQEGTLRIQGVQKEDAGFFVCSALS 115
            C A    +    + Q  +  L  P  +  H     +  TL +  V  + AG + C A +
Sbjct: 207 VCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASN 266

Query: 116 VAGSTTVRAFLQVT 129
           V G  +   F +V 
Sbjct: 267 VQGKHSTSMFFRVV 280

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 65.0 bits (158), Expect = 2e-12
 Identities = 22/141 (15%), Positives = 41/141 (29%), Gaps = 24/141 (17%)

Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGS------PPPHIRWYKNGNS-------LPPEDT 182
            P+++       +   +   L C   GS      P PH   Y +G+S          ++T
Sbjct: 4   IPVIEPSVPELVVKPGATVTLRCVGNGSVEWDGPPSPHWTLYSDGSSSILSTNNATFQNT 63

Query: 183 ----------RINVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLH 232
                      +  S++  L +      +    ++  V   + ALL C       E  + 
Sbjct: 64  GTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVS 123

Query: 233 WKKNGQFIDLESSKRVSILGD 253
             +      L      S    
Sbjct: 124 LVRVRGRP-LMRHTNYSFSPW 143

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  131 bits (330), Expect = 3e-37
 Identities = 38/202 (18%), Positives = 70/202 (34%), Gaps = 27/202 (13%)

Query: 18  QNMVGERETKPALLTVHAPPSFV----VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE 73
           ++ V E             P +     +  +   V       F+C A G+P+P++ W + 
Sbjct: 3   EDFVSENSN------NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKN 56

Query: 74  GSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVE 132
           G +      +  G   V  +  +L ++ V   D G + C   +  GS      L V    
Sbjct: 57  GKEF--KQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERS 114

Query: 133 DTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLP-------------P 179
              P +    P+N +  +       C+      PHI+W K+                   
Sbjct: 115 RHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL 174

Query: 180 EDTRINVSSSGSLQI-DVLRDD 200
           + + IN S++  L + +V   D
Sbjct: 175 KHSGINSSNAEVLALFNVTEAD 196

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  123 bits (310), Expect = 3e-34
 Identities = 30/151 (19%), Positives = 51/151 (33%), Gaps = 15/151 (9%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTV-----HAPPSFVVRPQDQKVGLNGIAS 55
           ++  V  SD+G Y C V+N  G        L V     H P      P +    + G   
Sbjct: 79  IMESVVPSDKGNYTCVVENEYGSINHT-YHLDVVERSRHRPILQAGLPANASTVVGGDVE 137

Query: 56  FQCVAEGSPLPSVFWTQEGSQ---------VLMFPGNAYGHLHVTQEGTLRIQGVQKEDA 106
           F C       P + W +   +         +       +  ++ +    L +  V + DA
Sbjct: 138 FVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADA 197

Query: 107 GFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
           G ++C   +  G     A+L V   +  P  
Sbjct: 198 GEYICKVSNYIGQANQSAWLTVLPKQQAPGR 228

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 86.5 bits (214), Expect = 2e-20
 Identities = 30/188 (15%), Positives = 49/188 (26%), Gaps = 45/188 (23%)

Query: 125 FLQVTSVEDTPPPIVQ---VGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED 181
           F+   S     P       +      +P  +     C A G+P P +RW KNG     E 
Sbjct: 5   FVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEH 64

Query: 182 ---TRINVSSSGSLQI-DVLRDD---------------------------------FRAE 204
                   +   SL +  V+  D                                     
Sbjct: 65  RIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGL 124

Query: 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSI 264
           P +     G      C       +P + W K+ +    ++  +    G P+    +   I
Sbjct: 125 PANASTVVGGDVEFVC-KVYSDAQPHIQWIKHVE----KNGSKYGPDGLPYLKVLKHSGI 179

Query: 265 FGSVLGAL 272
             S    L
Sbjct: 180 NSSNAEVL 187

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQD 45
           +  V ++D G+Y C V N +G+     A LTV        R ++
Sbjct: 189 LFNVTEADAGEYICKVSNYIGQANQS-AWLTVLPKQQAPGREKE 231

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  132 bits (333), Expect = 8e-37
 Identities = 39/206 (18%), Positives = 63/206 (30%), Gaps = 19/206 (9%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQ---DQKVGLNGIASFQC 58
               K  D G Y C V+N       K +   V   P+     Q    QK+ + G     C
Sbjct: 66  FVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVC 125

Query: 59  ------VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 112
                   E + LP + W ++       P           +  L +  V ++  G + C 
Sbjct: 126 PYMEFFKNENNELPKLQWYKDCK-----PLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCH 180

Query: 113 ALSVAGST--TVRAFLQVTSVE---DTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH 167
           A          +   ++  ++E    T P IV        + L S   L C   G     
Sbjct: 181 ASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDI 240

Query: 168 IRWYKNGNSLPPEDTRINVSSSGSLQ 193
             W  NG+ +  +D  +         
Sbjct: 241 AYWKWNGSVIDEDDPVLGEDYYSVEN 266

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  111 bits (278), Expect = 8e-29
 Identities = 42/281 (14%), Positives = 77/281 (27%), Gaps = 59/281 (20%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSP-LPSVFWTQEGSQVLMFPGNAYGHLHVTQE- 93
               +V   ++      I    C    +    ++ W ++ S+    P +      + Q  
Sbjct: 11  EKIILVSSANE------IDVRPCPLNPNEHKGTITWYKDDSKT---PVSTEQASRIHQHK 61

Query: 94  GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSV 153
             L     + ED+G + C   + +    ++   +    E       Q     Q LP+   
Sbjct: 62  EKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQA-IFKQKLPVAGD 120

Query: 154 AFLPC------QAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD------ 200
             L C      +   +  P ++WYK+   L  ++          L + +V          
Sbjct: 121 GGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHF-SGVKDRLIVMNVAEKHRGNYTC 179

Query: 201 --------------------------------FRAEPKDTRVASGETALLECGPPKGQPE 228
                                                +   V  G    L C    GQ  
Sbjct: 180 HASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLIC-NVTGQLS 238

Query: 229 PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVL 269
              +WK NG  ID +              + + RS   +VL
Sbjct: 239 DIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVL 279

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 87.5 bits (216), Expect = 4e-20
 Identities = 21/148 (14%), Positives = 35/148 (23%), Gaps = 20/148 (13%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERE---TKPALLTVHAPPSFVV------RPQDQKVGLN 51
           ++  V +   G Y C+       ++   T+                      +  +V L 
Sbjct: 165 IVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLG 224

Query: 52  GIASFQCVAEGSPLPSVFWTQEGSQVLMFPG----------NAYGHLHVTQEGTLRIQGV 101
                 C   G      +W   GS +               N       T    L I  +
Sbjct: 225 SQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEI 284

Query: 102 QKED-AGFFVCSALSVAGSTTVRAFLQV 128
           +       F C A +  G       L  
Sbjct: 285 ESRFYKHPFTCFAKNTHGIDAAYIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 67.4 bits (164), Expect = 4e-13
 Identities = 22/169 (13%), Positives = 44/169 (26%), Gaps = 49/169 (28%)

Query: 126 LQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH-IRWYKNGNSLPP---ED 181
           L+    ++    I+ V  +N+      +   PC    +     I WYK+ +  P    + 
Sbjct: 1   LEADKCKEREEKIILVSSANE------IDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQA 54

Query: 182 TRINVSSSGSLQI-DVLRDD--------------------------------FRAEPKDT 208
           +RI       L       +D                                        
Sbjct: 55  SRI-HQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQ 113

Query: 209 RVASGETALLEC-----GPPKGQPEPTLHWKKNGQFIDLESSKRVSILG 252
           ++       L C        +    P L W K+ + + L++     +  
Sbjct: 114 KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD 162

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 43.6 bits (102), Expect = 4e-05
 Identities = 8/52 (15%), Positives = 18/52 (34%)

Query: 202 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
           R E      ++ E  +  C     + + T+ W K+     + + +   I   
Sbjct: 9   REEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH 60

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  128 bits (323), Expect = 1e-36
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 6/132 (4%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
            I + +  D G+Y C V + V   +   A + V A P      + +       A   C +
Sbjct: 59  RINKPRAEDSGEYHC-VYHFVSAPKAN-ATIEVKAAPDITGHKRSENKNEGQDAMMYCKS 116

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT---LRIQGVQ-KEDAGFFVCSALSV 116
            G P P   W ++ + V     N+ G   +  +     L I  +Q  ED G + C+A + 
Sbjct: 117 VGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNS 176

Query: 117 AGSTTVRAFLQV 128
            GS +V   L+V
Sbjct: 177 IGSASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  120 bits (302), Expect = 1e-33
 Identities = 30/170 (17%), Positives = 53/170 (31%), Gaps = 22/170 (12%)

Query: 34  HAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLP--SVFWTQEGSQVLMFPGNAYGHLHVT 91
              P  V   +          + QC    S       +WT+ G ++              
Sbjct: 1   QNEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVEL---TATR----KNA 53

Query: 92  QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLH 151
                RI   + ED+G + C       +    A ++V +      P +     ++     
Sbjct: 54  SNMEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKA-----APDITGHKRSENKNEG 107

Query: 152 SVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT----RINVSSSG---SLQI 194
             A + C++VG P P   W K  N +  E +    R  + +      L I
Sbjct: 108 QDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNI 157

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 80.3 bits (198), Expect = 2e-18
 Identities = 25/152 (16%), Positives = 38/152 (25%), Gaps = 37/152 (24%)

Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP--HIRWYKNGNSLPPEDTRINVSSSGSLQ 193
            P +                L C    S     +  W KNG  L         +S+   +
Sbjct: 3   EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR---KNASNMEYR 59

Query: 194 I-DVLRDD---------------------------FRAEPKDTRVASGETALLECGPPKG 225
           I     +D                                +      G+ A++ C    G
Sbjct: 60  INKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKS-VG 118

Query: 226 QPEPTLHWKKNGQFIDLE---SSKRVSILGDP 254
            P P   W+K    +  E   SS R  I+   
Sbjct: 119 YPHPEWMWRKKENGVFEEISNSSGRFFIINKE 150

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  128 bits (322), Expect = 3e-35
 Identities = 40/206 (19%), Positives = 62/206 (30%), Gaps = 12/206 (5%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
            +  ++  DEG Y C          +    L V A P      Q  ++    +   +CV+
Sbjct: 82  RMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVS 141

Query: 61  E-GSPLPSVFWTQEGSQVLMFPGNAYGHLH--VTQEGTLRIQGVQKEDAGFFVCSALSVA 117
             G P   + W  +    +       G L   VT      +    + D     C     +
Sbjct: 142 TGGRPPAQITWHSDL-GGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHES 200

Query: 118 GSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH-IRWYKNGNS 176
                   + +T V   PP +   G  N      + A L C A  +P P    W      
Sbjct: 201 FEKPQLLTVNLT-VY-YPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGP 258

Query: 177 LPPEDTRINVSSSGSLQI-DVLRDDF 201
           LP       V+    L I  V +   
Sbjct: 259 LP----PFAVAQGAQLLIRPVDKPIN 280

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 92.5 bits (229), Expect = 5e-22
 Identities = 38/261 (14%), Positives = 66/261 (25%), Gaps = 67/261 (25%)

Query: 39  FVVRPQDQKVGLNGIASFQCVAEGSPLP-----SVFWTQEGSQVLMFPGNAYGHLHV--- 90
            V  P      L    +  C  +   +       + W + G    M   +          
Sbjct: 3   VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62

Query: 91  -------------TQEGTLRIQGVQKEDAGFFVCSALS-VAGSTTVRAFLQVTSVEDTPP 136
                         +  +LR+ G++ ED G + C  ++   GS +V  +L+V +      
Sbjct: 63  KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLA-----K 117

Query: 137 PIVQVGPSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPPEDTRIN-----VSSSG 190
           P          L    V    C +  G PP  I W+ +   +P            V+ + 
Sbjct: 118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTS 177

Query: 191 SLQIDVLRDDFRAE--------------------------------PKDTRVASGETALL 218
              +                                            +        A L
Sbjct: 178 LWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATL 237

Query: 219 ECGPPKGQPEPT-LHWKKNGQ 238
            C   +  PEPT  +W     
Sbjct: 238 TC-DARSNPEPTGYNWSTTMG 257

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 84.8 bits (209), Expect = 3e-19
 Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 11/131 (8%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERE-TKPALLTVHAPPSFVVRPQDQKVGLNG-IASFQC 58
           ++    + D     C V++   E+       LTV+ PP   +   D    L    A+  C
Sbjct: 180 ILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTC 239

Query: 59  VAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117
            A  +P P    W+     +  F         V Q   L I+ V K      +C+  +  
Sbjct: 240 DARSNPEPTGYNWSTTMGPLPPF--------AVAQGAQLLIRPVDKPINTTLICNVTNAL 291

Query: 118 GSTTVRAFLQV 128
           G+      +QV
Sbjct: 292 GARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 57.4 bits (138), Expect = 9e-10
 Identities = 23/171 (13%), Positives = 44/171 (25%), Gaps = 56/171 (32%)

Query: 137 PIVQVGPSNQTLPLHSVAFLPCQAVGSPPP-----HIRWYKNGNSLP------------P 179
            +VQ  P+     L     LPC              + W ++G S               
Sbjct: 2   VVVQA-PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYS 60

Query: 180 EDTRINVSSS--------GSLQI-DVLRDD-----------------------------F 201
           E  R+   ++         SL++  +  +D                              
Sbjct: 61  ESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQN 120

Query: 202 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILG 252
            AE +  ++      +  C    G+P   + W  +   +   S     + G
Sbjct: 121 TAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSG 171

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  128 bits (323), Expect = 1e-34
 Identities = 34/175 (19%), Positives = 64/175 (36%), Gaps = 16/175 (9%)

Query: 37  PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE--- 93
           P  + + +++    NG  +  C AEG P+P + W +         G+      +  +   
Sbjct: 2   PHII-QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60

Query: 94  --GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLH 151
              +L I+ V+  D+G + C A S  G      +L +        P      +       
Sbjct: 61  GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY-----APKFISNQTIYYSWEG 115

Query: 152 SVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT----RINVSSSGSLQI-DVLRDDF 201
           +   + C    +PP  I W ++   LP ++T      +      L+I     +DF
Sbjct: 116 NPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDF 170

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  127 bits (322), Expect = 2e-34
 Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 8/150 (5%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
            I +VK SD G+Y C   + +G  +     L +   P F+              +  C  
Sbjct: 66  HIKDVKLSDSGRYDCEAASRIGGHQKS-MYLDIEYAPKFISNQTIYYSWEGNPINISCDV 124

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSALSVA 117
           + +P  S+ W ++    L+ P     +L     G    L I      D G + C+A +  
Sbjct: 125 KSNPPASIHWRRDK---LVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHI 181

Query: 118 GSTTVRAFLQVTSVEDTPPPIVQVGPSNQT 147
           G+      L +  V    P  V++   +QT
Sbjct: 182 GTRFQEYILALADVPS-SPYGVKIIELSQT 210

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 90.2 bits (224), Expect = 9e-21
 Identities = 31/157 (19%), Positives = 48/157 (30%), Gaps = 41/157 (26%)

Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLP------PEDTRINVSS- 188
           P I+Q    N+T   +    L C A G P P I W +  +           D RI V   
Sbjct: 2   PHIIQ--LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59

Query: 189 --SGSLQI-DVLRDD----------------------------FRAEPKDTRVASGETAL 217
             S SL I DV   D                            F +         G    
Sbjct: 60  HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPIN 119

Query: 218 LECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
           + C   K  P  ++HW+++   +  +++  +      
Sbjct: 120 ISC-DVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTG 155

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  124 bits (313), Expect = 1e-34
 Identities = 34/167 (20%), Positives = 52/167 (31%), Gaps = 16/167 (9%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTV-----HAPPSFVVRPQDQKVGLNGIAS 55
           ++  V  SD G Y C V+N  G        L V     H P      P +Q   L     
Sbjct: 75  VMESVVPSDRGNYTCVVENKFGSIRQT-YTLDVLERSPHRPILQAGLPANQTAVLGSDVE 133

Query: 56  FQCVAEGSPLPSVFWTQEGSQVLMFPGN----------AYGHLHVTQEGTLRIQGVQKED 105
           F C       P + W +         G           ++    V  +  LR+  V + D
Sbjct: 134 FHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERD 193

Query: 106 AGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHS 152
            G ++C A +  G      +L V         +V+   +      H 
Sbjct: 194 GGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEADEAGSVHHHHH 240

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  123 bits (311), Expect = 2e-34
 Identities = 39/194 (20%), Positives = 68/194 (35%), Gaps = 22/194 (11%)

Query: 27  KPALLTVHAPPSFV----VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPG 82
            P        P +     +  +   V       F+C A G+P PS+ W + G +      
Sbjct: 2   DPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREF--RGE 59

Query: 83  NAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQV 141
           +  G + +  +  +L ++ V   D G + C   +  GS      L V       P +   
Sbjct: 60  HRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAG 119

Query: 142 GPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGN--------------SLPPEDTRINVS 187
            P+NQT  L S     C+      PHI+W K+                ++       +V 
Sbjct: 120 LPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVE 179

Query: 188 SSGSLQI-DVLRDD 200
           +   L++ +V   D
Sbjct: 180 ADVRLRLANVSERD 193

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 83.4 bits (206), Expect = 4e-19
 Identities = 25/150 (16%), Positives = 38/150 (25%), Gaps = 41/150 (27%)

Query: 129 TSVEDTPPPIVQ---VGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT--- 182
           T V+   P   +   +      +P  +     C A G+P P I W KNG     E     
Sbjct: 5   TGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG 64

Query: 183 RINVSSSGSLQI-DVLRDD---------------------------------FRAEPKDT 208
                   SL +  V+  D                                     P + 
Sbjct: 65  IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQ 124

Query: 209 RVASGETALLECGPPKGQPEPTLHWKKNGQ 238
               G      C       +P + W K+ +
Sbjct: 125 TAVLGSDVEFHC-KVYSDAQPHIQWLKHVE 153

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 52.6 bits (126), Expect = 2e-08
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 202 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS-KRVSILGDPW 255
           R + K   V +  T    C P  G P P++ W KNG+    E     + +    W
Sbjct: 19  RMDKKLLAVPAANTVRFRC-PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQW 72

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  123 bits (310), Expect = 2e-34
 Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 20/182 (10%)

Query: 33  VHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
            +  P  +  P D  V  N  A+  C  EG P P++ W ++G  V      +  H    +
Sbjct: 6   QYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKS--HRVQFK 63

Query: 93  EGTL----RIQGVQKEDAGFFVCSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQT 147
           +G L     +QG +++D G + C A +  G   +  A LQ+  +        +V P +  
Sbjct: 64  DGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVL----RDDFRVEPKDTR 119

Query: 148 LPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPP-------EDTRINVSSSGSLQI-DVLR 198
           +     A L C    G P P + W K+G  L           +R+ +   G+L I +V  
Sbjct: 120 VAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEP 179

Query: 199 DD 200
            D
Sbjct: 180 ID 181

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  110 bits (277), Expect = 2e-29
 Identities = 60/167 (35%), Positives = 79/167 (47%), Gaps = 44/167 (26%)

Query: 130 SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRIN---- 185
           + +   P I++  P++  +  +  A L C+  G P P I W+K+G  +   + + +    
Sbjct: 4   AGQYQSPRIIE-HPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQF 62

Query: 186 ---------------------------------VSSSGSLQIDVLRDDFRAEPKDTRVAS 212
                                            VS   SLQI VLRDDFR EPKDTRVA 
Sbjct: 63  KDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAK 122

Query: 213 GETALLECGPPKGQPEPTLHWKKNGQFID------LESSKRVSILGD 253
           GETALLECGPPKG PEPTL W K+G  +D        +S RV I+  
Sbjct: 123 GETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDG 169

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  109 bits (273), Expect = 6e-29
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 6/134 (4%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA-PPSFVVRPQDQKVGLNGIASFQCV 59
            +   K+ D G+Y C  +N VG+  ++ A L +      F V P+D +V     A  +C 
Sbjct: 72  TMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECG 131

Query: 60  -AEGSPLPSVFWTQEGSQVLMFPGNAY---GHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
             +G P P++ W ++G  +      ++     + +   G L I  V+  D G + C A +
Sbjct: 132 PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQN 191

Query: 116 VAGS-TTVRAFLQV 128
           + G+  +  A L V
Sbjct: 192 LVGTRESSYAKLIV 205

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 61.0 bits (148), Expect = 3e-11
 Identities = 16/44 (36%), Positives = 23/44 (52%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQ 44
           +I+ V+  DEG Y+C  QN+VG RE+  A L V    +      
Sbjct: 173 LISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHHH 216

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  122 bits (307), Expect = 2e-34
 Identities = 34/167 (20%), Positives = 58/167 (34%), Gaps = 12/167 (7%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
           A    +  P    V         C  EG   P + W ++G+ V                G
Sbjct: 1   AGLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60

Query: 95  TLRIQGVQKEDAGFFVCSALSVAGS-TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSV 153
            L ++ V++ DAG + C       +  +   +L V        P   V P +  +P ++ 
Sbjct: 61  FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG-----VPFFTVEPKDLAVPPNAP 115

Query: 154 AFLPCQAVGSPPP-HIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRD 199
             L C+AVG P P  I W++    +       +V     L +  +  
Sbjct: 116 FQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSV-----LNVTGVTQ 157

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  111 bits (280), Expect = 2e-30
 Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 13/130 (10%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
            +  V++SD G+Y C V++      ++P  LTV   P F V P+D  V  N      C A
Sbjct: 63  SLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEA 122

Query: 61  EGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
            G P P ++ W +  ++           +         +       +  F C A ++ G 
Sbjct: 123 VGPPEPVTIVWWRGTTK-----------IGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGL 171

Query: 120 TTVR-AFLQV 128
            + R A + +
Sbjct: 172 ASSRTATVHL 181

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 89.5 bits (222), Expect = 7e-22
 Identities = 34/151 (22%), Positives = 44/151 (29%), Gaps = 37/151 (24%)

Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS----GS 191
              +   P   T+       L C   G   P I+W K+G  +   D      S     G 
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61

Query: 192 LQI-DVLRDD-----------------------------FRAEPKDTRVASGETALLECG 221
           L +  V R D                             F  EPKD  V       L C 
Sbjct: 62  LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSC- 120

Query: 222 PPKGQPEP-TLHWKKNGQFIDLESSKRVSIL 251
              G PEP T+ W +    I    +   S+L
Sbjct: 121 EAVGPPEPVTIVWWRGTTKIG-GPAPSPSVL 150

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 50.6 bits (121), Expect = 6e-08
 Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDS 258
               P    V+ G+   L C   +G  EP + W K+G  +       + +    W   
Sbjct: 5   LMGAPVKLTVSQGQPVKLNCSV-EGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 4/34 (11%), Positives = 13/34 (38%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVH 34
           ++     +    + C   N+ G   ++ A + + 
Sbjct: 149 VLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 182

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  121 bits (306), Expect = 7e-34
 Identities = 39/184 (21%), Positives = 56/184 (30%), Gaps = 30/184 (16%)

Query: 29  ALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHL 88
           +   V       V P+ + V         C A G P     W +               +
Sbjct: 11  SSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMN-----------KEI 59

Query: 89  HVTQEGTLRIQGVQKEDAGFFVCSALSVAGS-TTVRAFLQV----------TSVEDTPPP 137
                  L    V  +DAGF+VC   +      +  + L V                   
Sbjct: 60  PNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKL 119

Query: 138 IVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DV 196
            + V P++Q L   S   L C AVGSP PH +W+KN   L  E             +  V
Sbjct: 120 QICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-------KKLYMVPYV 172

Query: 197 LRDD 200
             + 
Sbjct: 173 DLEH 176

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  104 bits (261), Expect = 3e-27
 Identities = 31/162 (19%), Positives = 46/162 (28%), Gaps = 31/162 (19%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP---------------SFVVRPQD 45
           +   V   D G Y C V N      ++ + L V   P                  V P  
Sbjct: 68  IFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTS 127

Query: 46  QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKED 105
           QK+        QCVA GSP+P   W +               L    +    +  V  E 
Sbjct: 128 QKLMPGSTLVLQCVAVGSPIPHYQWFKNELP-----------LTHETKKLYMVPYVDLEH 176

Query: 106 AGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQT 147
            G + C   +   S   +    +         +    P N+ 
Sbjct: 177 QGTYWCHVYNDRDSQDSKKVEIIIDE---LNNLGH--PDNKE 213

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 55.3 bits (133), Expect = 2e-09
 Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKV 48
           M+  V    +G Y C+V N    +++K   + +    +    P +++ 
Sbjct: 168 MVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL-GHPDNKEQ 214

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  124 bits (311), Expect = 2e-33
 Identities = 32/204 (15%), Positives = 64/204 (31%), Gaps = 18/204 (8%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS----FVVRPQDQKVGLNGI--- 53
            +    + D G Y C  +N     +     L V         F+  PQ   +  +G+   
Sbjct: 84  WLLPALQEDSGTYVCTTRNASYCDKMS-IELRVFENTDAFLPFISYPQILTLSTSGVLVC 142

Query: 54  ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
                         + W ++   +     +    L V     L +  V  EDAG++ C  
Sbjct: 143 PDLSEFTRDKTDVKIQWYKDSLLL---DKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVL 199

Query: 114 ----LSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA---VGSPPP 166
                    + T    L++   ++   P++       +  L S   +PC+     G+P  
Sbjct: 200 TFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLT 259

Query: 167 HIRWYKNGNSLPPEDTRINVSSSG 190
            + W+   ++           + G
Sbjct: 260 TMLWWTANDTHIESAYPGGRVTEG 283

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  120 bits (302), Expect = 4e-32
 Identities = 43/292 (14%), Positives = 81/292 (27%), Gaps = 59/292 (20%)

Query: 32  TVHAPPSFVVRPQDQKVGLNGIASFQC-------VAEGSPLPSVFWTQEGSQVLMFPGNA 84
              +        + +        + +C        A  SP  ++ W +  S         
Sbjct: 14  AARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSART--VPGE 71

Query: 85  YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPS 144
                  Q+G L +    +ED+G +VC+  + +    +   L+V    +     +     
Sbjct: 72  EETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRV---FENTDAFLPFISY 128

Query: 145 NQTLPLHSVAFLPCQ-----AVGSPPPHIRWYKNGNSLPPEDTR-INVSSSGSLQI-DVL 197
            Q L L +   L C              I+WYK+   L  ++ + ++V  +  L + DV 
Sbjct: 129 PQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVA 188

Query: 198 RDD-------------------------------------FRAEPKDTRVASGETALLEC 220
            +D                                       +  K    + G    + C
Sbjct: 189 LEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPC 248

Query: 221 --GPPKGQPEPTLHW-KKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVL 269
                 G P  T+ W   N   I+          G     S  + +     L
Sbjct: 249 KVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPL 300

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 91.3 bits (226), Expect = 2e-21
 Identities = 22/151 (14%), Positives = 45/151 (29%), Gaps = 23/151 (15%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERE---TKPALLTV-----HAPPSFVVRPQDQKVGLNG 52
           ++ +V   D G Y+C +      ++   T+   L +        P  +   +     L  
Sbjct: 183 LVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGS 242

Query: 53  IASFQCVA---EGSPLPSVFWTQEGSQVLMFPGNA-----YGHLHVTQEG------TLRI 98
             +  C      G+PL ++ W       +                 ++         L  
Sbjct: 243 RLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIF 302

Query: 99  QGVQKEDAGF-FVCSALSVAGSTTVRAFLQV 128
             V +ED    F C   +     T+R  ++ 
Sbjct: 303 DPVTREDLHMDFKCVVHNTLSFQTLRTTVKE 333

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 73.2 bits (179), Expect = 5e-15
 Identities = 25/181 (13%), Positives = 51/181 (28%), Gaps = 46/181 (25%)

Query: 117 AGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPC-------QAVGSPPPHIR 169
           A   T++      +               +         L C        A  SP  ++ 
Sbjct: 1   ADPFTLQPAAHTGAARS--CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLT 58

Query: 170 WYKNGNSLPP---EDTRI-----------------------------NVSSSGSLQIDVL 197
           W+KN ++      E+TR+                                 S  L++   
Sbjct: 59  WHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFEN 118

Query: 198 RDDFRAE-PKDTRVASGETALLEC----GPPKGQPEPTLHWKKNGQFIDLESSKRVSILG 252
            D F         +    + +L C       + + +  + W K+   +D ++ K +S+ G
Sbjct: 119 TDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG 178

Query: 253 D 253
            
Sbjct: 179 T 179

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  119 bits (299), Expect = 6e-33
 Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 7/139 (5%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPAL-LTVHAPPSFVVRPQDQKVGLNGIASFQC- 58
               V + D G Y C V    G    +  + L V  PPS           +   A   C 
Sbjct: 71  TFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCS 130

Query: 59  VAEGSPLPSVFWTQEGSQVLMFP-----GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
             +GSP     W ++G  +   P      +   ++     G L    +   D G + C A
Sbjct: 131 EQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEA 190

Query: 114 LSVAGSTTVRAFLQVTSVE 132
            +  G+      +++ +VE
Sbjct: 191 RNGYGTPMTSNAVRMEAVE 209

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  116 bits (292), Expect = 8e-32
 Identities = 32/186 (17%), Positives = 58/186 (31%), Gaps = 22/186 (11%)

Query: 35  APPSFVV--RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGN------AYG 86
           A  S  V     + ++  N      C   G   P V W  +                +Y 
Sbjct: 1   AMGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYE 60

Query: 87  HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQ 146
                    +  + V +ED G + C      G++     +++  +    PP         
Sbjct: 61  DRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLV---PPSKPTVNIPS 117

Query: 147 TLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPP---------EDTRINVSSSGSLQI-D 195
           +  + + A L C    GSPP    W+K+G  +P            + +   ++G L    
Sbjct: 118 SATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDP 177

Query: 196 VLRDDF 201
           +   D 
Sbjct: 178 LSASDT 183

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 85.0 bits (210), Expect = 6e-20
 Identities = 20/161 (12%), Positives = 32/161 (19%), Gaps = 41/161 (25%)

Query: 134 TPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRIN-------- 185
                V        +P ++   L C   G   P + W  +           N        
Sbjct: 2   MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61

Query: 186 --VSSSGSLQI-DVLRDD------------------------------FRAEPKDTRVAS 212
                   +    V R+D                                     +    
Sbjct: 62  RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATI 121

Query: 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
           G  A+L C    G P     W K+G  +        +    
Sbjct: 122 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNS 162

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 8/50 (16%), Positives = 12/50 (24%), Gaps = 1/50 (2%)

Query: 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
             + R+       L C    G   P + WK +             I    
Sbjct: 11  EPEVRIPENNPVKLSC-AYSGFSSPRVEWKFDQGDTTRLVCYNNKITASY 59

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  121 bits (305), Expect = 1e-32
 Identities = 29/218 (13%), Positives = 60/218 (27%), Gaps = 23/218 (10%)

Query: 1   MITEVKKSDEG-KYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQC- 58
            I     +D   +Y C V    G+         +  PPS +    +            C 
Sbjct: 92  WIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCG 151

Query: 59  VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
           +       ++ W +   ++++      G  +      L I   + ED+G + C       
Sbjct: 152 ILYAKHYNNITWYKNNQELII-----DGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDV 206

Query: 119 ----STTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSP----PPHIRW 170
                  V     +T +         +      + +   A + C AV +        I W
Sbjct: 207 RIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDW 266

Query: 171 YKNGNSLPPEDTRI-------NVSSSGSLQI-DVLRDD 200
                 +   D  +          +  +L   +V  + 
Sbjct: 267 ENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEY 304

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 99.5 bits (247), Expect = 2e-24
 Identities = 46/283 (16%), Positives = 72/283 (25%), Gaps = 65/283 (22%)

Query: 22  GERETKPA-LLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPL---------PSVFWT 71
             R+T PA       P        +    L    S +C      L           V W 
Sbjct: 14  KMRDTLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWE 73

Query: 72  QEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAG-FFVCSALSVAGSTTVRAFLQVTS 130
           + G      P N        + G L I      D+   ++C+  +  G   V+  ++   
Sbjct: 74  KIGKTRR--PLN-----RRVKNGDLWIANYTSNDSHRRYLCTVTTKNG-DCVQGIVRSHI 125

Query: 131 VEDTPPPIVQVGPSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPPEDTRINVSSS 189
            +   PP                  L C  +      +I WYKN   L  + T+    S 
Sbjct: 126 RK---PPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKY-SQSG 181

Query: 190 GSLQI-DVLRDD-------------------------------------FRAEPKDTRVA 211
            +L I +   +D                                              V 
Sbjct: 182 QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVT 241

Query: 212 SGETALLEC---GPPKGQPEPTLHWKKNGQFIDLESSKRVSIL 251
            GE A + C          +  + W+    +I        SIL
Sbjct: 242 IGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSIL 284

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 91.4 bits (226), Expect = 2e-21
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 16/144 (11%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERE-----TKPALLTVHAPPS---FVVRPQDQKVGLNG 52
           +I   +  D G+Y CYV       +     ++  +LTV         ++      V +  
Sbjct: 185 IIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGE 244

Query: 53  IASFQCVAEGSPLP----SVFWTQEGSQVLMFPGNAYGHL---HVTQEGTLRIQGVQKED 105
            A+  C A  + L      + W      ++      Y  L       E TL  + V +E 
Sbjct: 245 PANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEY 304

Query: 106 AGF-FVCSALSVAGSTTVRAFLQV 128
            G  + C   +     T+   + +
Sbjct: 305 IGNTYTCRGHNYYFDKTLTTTVVL 328

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  117 bits (296), Expect = 1e-32
 Identities = 31/162 (19%), Positives = 54/162 (33%), Gaps = 8/162 (4%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
            P      +D    L   A   C   G PLP + W + G ++       Y      +  T
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKEL--IQSRKYKMSSDGRTHT 64

Query: 96  LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAF 155
           L +   ++ED G + C A +  G     + L + +     P             + S   
Sbjct: 65  LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPL--KEKYYGAVGSTLR 122

Query: 156 LPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG---SLQI 194
           L    +G P P + W+     L   +  I + ++     L +
Sbjct: 123 LHVMYIGRPVPAMTWFHGQKLLQNSE-NITIENTEHYTHLVM 163

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  106 bits (266), Expect = 4e-28
 Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 13/136 (9%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVR---PQDQKVGLNGIASFQ 57
            +   ++ DEG Y C   N VGE ET  + L + A P F       +     +       
Sbjct: 66  TVMTEEQEDEGVYTCIATNEVGEVETS-SKLLLQATPQFHPGYPLKEKYYGAVGSTLRLH 124

Query: 58  CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKE-DAGFFVCSA 113
            +  G P+P++ W      +         ++ +        L ++ VQ++  AG +    
Sbjct: 125 VMYIGRPVPAMTWFHGQKLL-----QNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQL 179

Query: 114 LSVAGSTTVRAFLQVT 129
            +V G+      +++ 
Sbjct: 180 SNVFGTVDAILDVEIQ 195

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 97.5 bits (243), Expect = 8e-25
 Identities = 34/160 (21%), Positives = 55/160 (34%), Gaps = 40/160 (25%)

Query: 130 SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS 189
           ++    P I +    + T  L   A L CQ VG P P I+WY+ G  L     +  +SS 
Sbjct: 2   AMSGEAPGIRK-EMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQ-SRKYKMSSD 59

Query: 190 G---SLQI-DVLRDD-----FRAE--------------------------PKDTRVASGE 214
           G   +L +    ++D       A                            +    A G 
Sbjct: 60  GRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGS 119

Query: 215 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
           T  L      G+P P + W    +   L++S+ ++I    
Sbjct: 120 TLRLHV-MYIGRPVPAMTWFHGQK--LLQNSENITIENTE 156

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  118 bits (296), Expect = 2e-32
 Identities = 35/182 (19%), Positives = 51/182 (28%), Gaps = 21/182 (11%)

Query: 37  PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMF------PGNAYGHLHV 90
            S      D +V  N      C   G   P V W                    Y     
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 91  TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPL 150
                +    V ++D G + C      G       + +T +    PP         ++ +
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLV---PPSKPTISVPSSVTI 118

Query: 151 HSVAFLPCQAV-GSPPPHIRWYKNGNSLPPED----------TRINVSSSGSLQI-DVLR 198
            + A L C    GSPP    W+K+G S+   D          +      SG L    V  
Sbjct: 119 GNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTA 178

Query: 199 DD 200
            D
Sbjct: 179 FD 180

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  116 bits (291), Expect = 1e-31
 Identities = 31/147 (21%), Positives = 50/147 (34%), Gaps = 12/147 (8%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPAL-LTVHAPPSFVVRPQDQKVGLNGIASFQC- 58
             + V + D G+Y C V    G+   + ++ LTV  PPS         V +   A   C 
Sbjct: 68  TFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCS 127

Query: 59  VAEGSPLPSVFWTQEGSQVLMFPGNAY------GHLHVTQEGTLRIQGVQKEDAGFFVCS 112
             +GSP     W ++G  +L                   + G L    V   D+G + C 
Sbjct: 128 EHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQ 187

Query: 113 ALSVAGSTTVRAFLQVTSVEDTPPPIV 139
           A +  G+        + +        V
Sbjct: 188 AQNGYGTAMRSEAAHMDA----VELNV 210

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 83.5 bits (206), Expect = 2e-19
 Identities = 25/158 (15%), Positives = 37/158 (23%), Gaps = 41/158 (25%)

Query: 137 PIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP----------EDTRINV 186
             V    S+  +P +    L C   G   P + W     S                    
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 187 SSSGSLQI-DVLRDD------------------------------FRAEPKDTRVASGET 215
            SS  +    V R D                                     + V  G  
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNR 121

Query: 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
           A+L C    G P     W K+G  +    +K+     +
Sbjct: 122 AVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMN 159

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  114 bits (288), Expect = 2e-31
 Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 15/139 (10%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTV---------HAPPSFVVRPQDQKVGLN 51
            I  V+ SD+G Y C+V +    +      + +           P   VV+ +D    + 
Sbjct: 69  YIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMG 128

Query: 52  GIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
              + +C A G+P+P + W +    +   P  A      T    L+I  +Q ED G + C
Sbjct: 129 QNVTLECFALGNPVPDIRWRKVLEPM---PSTAE---ISTSGAVLKIFNIQLEDEGIYEC 182

Query: 112 SALSVAGSTTVRAFLQVTS 130
            A ++ G    +A + V +
Sbjct: 183 EAENIRGKDKHQARIYVQA 201

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  113 bits (285), Expect = 6e-31
 Identities = 32/177 (18%), Positives = 53/177 (29%), Gaps = 12/177 (6%)

Query: 32  TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLP--SVFWTQEGSQVLMFPGNAYGHLH 89
           + +  P       + +V         C          S  W      V +          
Sbjct: 4   SGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDK--RRFV 61

Query: 90  VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDT-----PPPIVQVGPS 144
               G L I  V+  D G + C   S + + +V +                P  + V   
Sbjct: 62  SQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFK 121

Query: 145 NQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
           +    +     L C A+G+P P IRW K    +P         S   L+I ++  +D
Sbjct: 122 DVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIST--SGAVLKIFNIQLED 176

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 57.6 bits (139), Expect = 3e-10
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 196 VLRDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGD 253
            L      E  + RV  G+  +L C PP   P+  +  W  N   + +   KR  +   
Sbjct: 6   YLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT 64

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  117 bits (293), Expect = 5e-31
 Identities = 33/227 (14%), Positives = 59/227 (25%), Gaps = 27/227 (11%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTV-----------HAPPSFVVRPQDQKVG 49
              ++   D G Y C V +  G   +                    P   V      ++ 
Sbjct: 61  TFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEIL 120

Query: 50  LNGIASFQC-VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGF 108
             G   F     + S    V +     ++   P         T    + ++ +Q ED G 
Sbjct: 121 EKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGT 180

Query: 109 FVCSALSVAGSTTVRAFLQVTSVE--------DTPPPIVQVGPSNQTLPLHSV-----AF 155
           +         +      L     +             I + GP         V       
Sbjct: 181 YTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVL 240

Query: 156 LPCQAVGSPPP-HIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
           L C+        HI WYK+   +  ++         +L I +  + D
Sbjct: 241 LKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKD 287

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  108 bits (272), Expect = 6e-28
 Identities = 27/277 (9%), Positives = 71/277 (25%), Gaps = 64/277 (23%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
            P       +         +F+C  + +P     W+++                   +  
Sbjct: 3   DPFTKEVVVNVDDDGVISLNFEC-DKMTPKSEFSWSKDYVST--EDSPRLEVESKGNKTK 59

Query: 96  LRIQGVQKEDAGFFVCSALSVAGSTT--------VRAFLQVTSVEDTPPPIVQVGPSNQT 147
           +  + +  +D G + C      G  +        ++  L ++     P   V+   + + 
Sbjct: 60  MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEI 119

Query: 148 LPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP-EDTRINVSSSG---SLQI-DVLRDD-- 200
           L    V F       S    + +  N   +      ++++  +     + +  +  +D  
Sbjct: 120 LEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEG 179

Query: 201 ---FRA-----------------------------------------EPKDTRVASGETA 216
              F+                                          E     V      
Sbjct: 180 TYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNV 239

Query: 217 LLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
           LL+C     + E  + W K+ +  ++   ++      
Sbjct: 240 LLKCKVANIKKETHIVWYKDER--EISVDEKHDFKDG 274

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 76.6 bits (188), Expect = 3e-16
 Identities = 20/147 (13%), Positives = 38/147 (25%), Gaps = 24/147 (16%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSF------------------VVR 42
            + +++  DEG Y   +Q+      +   +L                           V 
Sbjct: 169 FMEKLQDEDEGTYTFQLQDGKATNHST-VVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 227

Query: 43  PQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGV 101
               +V        +C          + W ++  ++       +         TL I   
Sbjct: 228 YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI--SVDEKH--DFKDGICTLLITEF 283

Query: 102 QKEDAGFFVCSALSVAGSTTVRAFLQV 128
            K+DAG +        G    R  L  
Sbjct: 284 SKKDAGIYEVILKDDRGKDKSRLKLVD 310

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score =  112 bits (282), Expect = 2e-30
 Identities = 34/187 (18%), Positives = 53/187 (28%), Gaps = 31/187 (16%)

Query: 17  VQNMVGERETKPA-LLTVHAPPS-----FVVRPQDQKVGLNGIASFQCVAEGSPLPSVFW 70
           V   +GER T  +    V   P      F + P +++V L G      +    P    F 
Sbjct: 1   VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQV-LIGRMHHDVIFIEWPFRGFFD 59

Query: 71  TQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS 130
               +                    L +        G ++C         T +  L V  
Sbjct: 60  IHRSAN----------------TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV- 102

Query: 131 VEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLP---PEDTRINVS 187
                P  + V       P  SV  + C     P PH++W       P     +  +   
Sbjct: 103 ----KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKE 158

Query: 188 SSGSLQI 194
             GSL +
Sbjct: 159 KDGSLSV 165

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score =  103 bits (258), Expect = 5e-27
 Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 5/123 (4%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
           ++T    S +G Y C ++    E   +   L+V  P +  V  +  +     + +  C  
Sbjct: 70  VVTAANISHDGNYLCRMKLGETEVTKQ-EHLSVVKPLTLSVHSERSQFPDFSVLTVTCTV 128

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQ---GVQKEDAGFFVCSALSVA 117
              P P V W          P  A G +   ++G+L +     + K       C   +  
Sbjct: 129 NAFPHPHVQWLMPEGVEPA-PTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDK 187

Query: 118 GST 120
              
Sbjct: 188 EEA 190

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 49.3 bits (117), Expect = 3e-07
 Identities = 18/149 (12%), Positives = 40/149 (26%), Gaps = 24/149 (16%)

Query: 127 QVTSVEDTPPPIVQ---VGPSNQTLPLHSVAFLPCQAVGSPPPHIRW-YKNGNSLPPEDT 182
               V   P   V    +GP  + + +  +       +  P       +++ N+     T
Sbjct: 14  YWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHH-DVIFIEWPFRGFFDIHRSANTFFLVVT 72

Query: 183 RINVSSSG---------------SLQIDVLR-DDFRAEPKDTRVASGETALLECGPPKGQ 226
             N+S  G                  + V++        + ++        + C      
Sbjct: 73  AANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTC-TVNAF 131

Query: 227 PEPTLHWKKNG--QFIDLESSKRVSILGD 253
           P P + W      +     ++  V    D
Sbjct: 132 PHPHVQWLMPEGVEPAPTAANGGVMKEKD 160

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score =  112 bits (281), Expect = 2e-30
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 10/127 (7%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
            IT ++ SD G+YQC V        ++P  + +   P F+  P+D+ V  N   +  C A
Sbjct: 71  RITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQA 130

Query: 61  EGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
           +G P P  + W Q+   +   PG+         + +L + G+       F C A +  G 
Sbjct: 131 QGPPEPVDLLWLQDAVPLATAPGHG-------PQRSLHVPGL--NKTSSFSCEAHNAKGV 181

Query: 120 TTVRAFL 126
           TT R   
Sbjct: 182 TTSRTAT 188

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score =  110 bits (277), Expect = 7e-30
 Identities = 31/174 (17%), Positives = 54/174 (31%), Gaps = 18/174 (10%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAE-GSPLPSVFWTQEGSQV-------LMFPGNAYGH 87
              FV  P +         + +C  +     P V W ++G  +          P      
Sbjct: 2   ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61

Query: 88  LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR-AFLQVTSVEDTPPPIVQVGPSNQ 146
                   LRI  +Q  D G + C       +   +  ++ +        P     P ++
Sbjct: 62  DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG-----LPYFLEEPEDR 116

Query: 147 TLPLHSVAFLPCQAVGSPPP-HIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRD 199
           T+  ++   L CQA G P P  + W ++   L             SL +  L  
Sbjct: 117 TVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH---GPQRSLHVPGLNK 167

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 75.3 bits (185), Expect = 1e-16
 Identities = 33/153 (21%), Positives = 46/153 (30%), Gaps = 45/153 (29%)

Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQA-VGSPPPHIRWYKNGNSLPP-----------EDT 182
             P V   P N T        L CQ  V   PP + W ++G  L             ED 
Sbjct: 2   ESPFVG-NPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60

Query: 183 RINVSSSGSLQI-DVLRDD-----------------------------FRAEPKDTRVAS 212
           + +      L+I  +   D                             F  EP+D  VA+
Sbjct: 61  QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAA 120

Query: 213 GETALLECGPPKGQPEPT-LHWKKNGQFIDLES 244
                L C   +G PEP  L W ++   +    
Sbjct: 121 NTPFNLSC-QAQGPPEPVDLLWLQDAVPLATAP 152

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 59.1 bits (143), Expect = 9e-11
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRR 260
           F   P +   A G T  L C        P +HW ++GQ ++L  S +  +   P  +  +
Sbjct: 5   FVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQV---PLGEDEQ 61

Query: 261 SRSIFGSVL 269
              I  S L
Sbjct: 62  DDWIVVSQL 70

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score =  114 bits (286), Expect = 7e-30
 Identities = 32/207 (15%), Positives = 51/207 (24%), Gaps = 14/207 (6%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQ--- 57
            ++ ++  DEG Y C               LTV A P+  +      +        +   
Sbjct: 95  RLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLV 154

Query: 58  ---CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 114
                A G P   V W         +      +  VT     R+   ++       C   
Sbjct: 155 ATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVN 214

Query: 115 SVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH-IRWYKN 173
                      L V       P +   G             L C+A  +PP     W   
Sbjct: 215 YHMDRFKESLTLNVQY----EPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTL 270

Query: 174 GNSLPPEDTRINVSSSGSLQIDVLRDD 200
             SLP     +   +        +   
Sbjct: 271 NGSLPK---GVEAQNRTLFFKGPINYS 294

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 81.3 bits (200), Expect = 6e-18
 Identities = 30/262 (11%), Positives = 56/262 (21%), Gaps = 58/262 (22%)

Query: 34  HAPPSFVVRPQDQKVGLNGIASFQCVAEGSP----LPSVFWTQEGSQV------------ 77
             P   V         +       C          +  V W +  +              
Sbjct: 12  RDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMG 71

Query: 78  LMFPGNAYGHLHVT----QEGTLRIQGVQKEDAGFFVCSALS-VAGSTTVRAFLQVTSVE 132
           +         +        +GT+R+  ++ ED G ++C   +   G+   +  L V +  
Sbjct: 72  VSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKP 131

Query: 133 DTPPPIVQVGPSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLP----PEDTRINVS 187
                  Q     +      V    C +  G PP  + W              +    V+
Sbjct: 132 TNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVT 191

Query: 188 SSGSLQIDVLRDDFRAE------------------------------PKDTRVASGETAL 217
                ++   R+  +                                             
Sbjct: 192 VISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVK 251

Query: 218 LECGPPKGQPEPT-LHWKKNGQ 238
           L C      P  T  HW     
Sbjct: 252 LTC-KADANPPATEYHWTTLNG 272

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 80.6 bits (198), Expect = 1e-17
 Identities = 18/148 (12%), Positives = 44/148 (29%), Gaps = 15/148 (10%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNG-IASFQCV 59
            +   +++ +    C V   +   + +   L V   P   +   D    L        C 
Sbjct: 197 RLVPSREAHQQSLACIVNYHMDRFK-ESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCK 255

Query: 60  AEGSPLPS-VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
           A+ +P  +   WT     +          +            +    AG ++C A +  G
Sbjct: 256 ADANPPATEYHWTTLNGSLP-------KGVEAQNRTLFFKGPINYSLAGTYICEATNPIG 308

Query: 119 STTVRAFLQVTSVEDTPPPIVQVGPSNQ 146
           + + +  + +     T    ++    + 
Sbjct: 309 TRSGQVEVNI-----TEAAALEHHHHHH 331

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score =  108 bits (269), Expect = 2e-27
 Identities = 29/214 (13%), Positives = 55/214 (25%), Gaps = 27/214 (12%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS----FVVRPQDQKVGLNGIASF 56
                  +D G Y C ++N     +     L V    S     +  P  +     GI   
Sbjct: 82  WFRPTLLNDTGNYTCMLRNTTYCSKVA-FPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRI 140

Query: 57  QC-----VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
            C         S  P++ W     ++         +  + +   L        + G + C
Sbjct: 141 TCPNVDGYFPSSVKPTITWYMGCYKIQN------FNNVIPEGMNLSFLIALISNNGNYTC 194

Query: 112 SA----LSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTL---PLHSVAFLPCQAV--- 161
                        T    ++V        P V   P++  +          +PC      
Sbjct: 195 VVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSF 254

Query: 162 -GSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI 194
                  + W  +G         + ++ S S   
Sbjct: 255 LMDSRNEVWWTIDGKKPDDITIDVTINESISHSR 288

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 92.2 bits (228), Expect = 1e-21
 Identities = 32/241 (13%), Positives = 62/241 (25%), Gaps = 51/241 (21%)

Query: 51  NGIASFQCVAEGSPLPSVFW--TQEGSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAG 107
                F      S   ++ W  T++   +            +++E   L  +     D G
Sbjct: 33  EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTG 92

Query: 108 FFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPC-----QAVG 162
            + C   +    + V   L+V   +D+        P ++    + +  + C         
Sbjct: 93  NYTCMLRNTTYCSKVAFPLEVV-QKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPS 151

Query: 163 SPPPHIRWYKNGNSLPPEDTRI------------------------------NVSSSGSL 192
           S  P I WY     +   +  I                                  + +L
Sbjct: 152 SVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTL 211

Query: 193 QIDVLRDDFRAEP---------KDTRVASGETALLEC---GPPKGQPEPTLHWKKNGQFI 240
            + V+     A P                GE  L+ C             + W  +G+  
Sbjct: 212 TVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKP 271

Query: 241 D 241
           D
Sbjct: 272 D 272

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 79.9 bits (196), Expect = 3e-17
 Identities = 28/152 (18%), Positives = 41/152 (26%), Gaps = 24/152 (15%)

Query: 1   MITEVKKSDEGKYQCYVQ---NMVGERETKPALLTVHAPPSFVVRPQ--------DQKVG 49
                  S+ G Y C V    N      T+   + V   P   V P           +  
Sbjct: 180 SFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKE 239

Query: 50  LNGIASFQCVA----EGSPLPSVFWTQEGSQVLMFPGNAY--------GHLHVTQEGTLR 97
                   C             V+WT +G +      +               T+   L 
Sbjct: 240 PGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILS 299

Query: 98  IQGVQKEDAGF-FVCSALSVAGSTTVRAFLQV 128
           I+ V  ED    +VC A S  G     A ++ 
Sbjct: 300 IKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 47.2 bits (111), Expect = 3e-06
 Identities = 16/142 (11%), Positives = 29/142 (20%), Gaps = 44/142 (30%)

Query: 152 SVAFLPCQAVGSPPPHIRWYKNGNSLPPE--------DTRINV----------------- 186
                      S    + WY        E        + RI+                  
Sbjct: 34  HFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGN 93

Query: 187 ----------SSSGSLQIDVLRDD-----FRAEPKDTRVASGETALLEC----GPPKGQP 227
                      S  +  ++V++ D         P            + C    G      
Sbjct: 94  YTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSV 153

Query: 228 EPTLHWKKNGQFIDLESSKRVS 249
           +PT+ W      I   ++    
Sbjct: 154 KPTITWYMGCYKIQNFNNVIPE 175

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score =  108 bits (269), Expect = 6e-27
 Identities = 40/193 (20%), Positives = 68/193 (35%), Gaps = 18/193 (9%)

Query: 2   ITEVKKSDEGKYQ--CYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCV 59
              V   DEG  +  C V      +ET    +T+++ P+  V     +V      + +C 
Sbjct: 248 SVSVTAEDEGTQRLTCAVILGNQSQETL-QTVTIYSFPAPNVILTKPEVSEGTEVTVKCE 306

Query: 60  AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA-LSVAG 118
           A      ++                     +     L ++   +++   F CSA L VAG
Sbjct: 307 AHPRAKVTLNGVPAQP--------------LGPRAQLLLKATPEDNGRSFSCSATLEVAG 352

Query: 119 STTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLP 178
               +   +   V   P    +  P N T P +S     CQA G+P P ++  K+G    
Sbjct: 353 QLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL 412

Query: 179 PEDTRINVSSSGS 191
           P    + V+    
Sbjct: 413 PIGESVTVTRDLE 425

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 90.3 bits (223), Expect = 1e-20
 Identities = 35/274 (12%), Positives = 74/274 (27%), Gaps = 41/274 (14%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERE-------TKPALLTVHAPPSFVVRPQDQKVGLNG- 52
            +   +      + C  +  +  +        + P  L     P+   +    +V     
Sbjct: 145 TVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDT 204

Query: 53  IASFQCVAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
             +  C  +G  P+             + P   YG+   + + ++ +   + E      C
Sbjct: 205 QGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVT-AEDEGTQRLTC 263

Query: 112 SALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWY 171
           + +    S      + + S    P P V    +   +   +   + C+A       +   
Sbjct: 264 AVILGNQSQETLQTVTIYS---FPAPNVI--LTKPEVSEGTEVTVKCEAHPRAKVTLNGV 318

Query: 172 KNGNSLPPEDTRINVSS----------------------SGSLQIDVL---RDDFRAEPK 206
                 P     +  +                       + + ++ VL   R D R  P 
Sbjct: 319 PAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPG 378

Query: 207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 240
           +            C    G P P L   K+G F 
Sbjct: 379 NWTWPENSQQTPMC-QAWGNPLPELKCLKDGTFP 411

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 85.3 bits (210), Expect = 6e-19
 Identities = 34/278 (12%), Positives = 65/278 (23%), Gaps = 48/278 (17%)

Query: 8   SDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGS---P 64
            ++ +  CY     G+   K  L     P    + P      +    + +C  EG     
Sbjct: 58  QEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRA 117

Query: 65  LPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA 124
             +V   +   ++          +    E T  +   +      F C          +  
Sbjct: 118 NLTVVLLRGEKEL-----KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLEL 172

Query: 125 FLQVTSVEDT----PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPP---PHIRWYKNGNSL 177
           F   ++         P       S + L + +   + C   G  P     +        L
Sbjct: 173 FENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL 232

Query: 178 PPEDTRINVSSSGSLQIDVLRDD------------------------------FRAEPKD 207
            P  T  N S S    + V  +D                                     
Sbjct: 233 NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTK 292

Query: 208 TRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS 245
             V+ G    ++C   +  P   +             +
Sbjct: 293 PEVSEGTEVTVKC---EAHPRAKVTLNGVPAQPLGPRA 327

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 76.4 bits (187), Expect = 7e-16
 Identities = 24/132 (18%), Positives = 41/132 (31%), Gaps = 20/132 (15%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPAL---LTVHAPPSFVVR--PQDQKVGLNGIASF 56
           +    + +   + C     V  +         L V   P    R  P +     N   + 
Sbjct: 331 LKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTP 390

Query: 57  QCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 116
            C A G+PLP +   ++G+  L                      V ++  G ++C A S 
Sbjct: 391 MCQAWGNPLPELKCLKDGTFPLP---------------IGESVTVTRDLEGTYLCRARST 435

Query: 117 AGSTTVRAFLQV 128
            G  T    + V
Sbjct: 436 QGEVTREVTVNV 447

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 71.1 bits (173), Expect = 4e-14
 Identities = 35/249 (14%), Positives = 61/249 (24%), Gaps = 59/249 (23%)

Query: 41  VRPQDQKVGLNGIASFQCVAEGSPLPSVFW-TQEGSQVLMFPGNAYGHLHVTQEGTLRIQ 99
           V P    +   G     C         +   T    + L+ PGN               +
Sbjct: 4   VSPSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGN----------NRKVYE 53

Query: 100 GVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQ 159
               ++    +C +    G +T + FL V       P  V++ P     P+     L CQ
Sbjct: 54  LSNVQEDSQPMCYSNCPDGQSTAKTFLTV----YWTPERVELAPLPSWQPVGKNLTLRCQ 109

Query: 160 AVGSPPPH---IRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAE------------ 204
             G  P     +   +    L  E   +   +  +  + V RD   A             
Sbjct: 110 VEGGAPRANLTVVLLRGEKELKRE-PAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQ 168

Query: 205 --------------------------PKDTRVASGETALLECGPPKGQP--EPTLHWKKN 236
                                          +       + C      P  E  +H    
Sbjct: 169 GLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALG 228

Query: 237 GQFIDLESS 245
            Q ++   +
Sbjct: 229 DQRLNPTVT 237

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 51.4 bits (122), Expect = 1e-07
 Identities = 18/138 (13%), Positives = 31/138 (22%), Gaps = 27/138 (19%)

Query: 139 VQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYK--NGNSLPPEDTRINV---------- 186
             V PS   LP      + C      P  +          L        V          
Sbjct: 2   TSVSPSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQEDS 61

Query: 187 -------------SSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEP--TL 231
                        ++   L +    +     P  +    G+   L C    G P    T+
Sbjct: 62  QPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTV 121

Query: 232 HWKKNGQFIDLESSKRVS 249
              +  + +  E +    
Sbjct: 122 VLLRGEKELKREPAVGEP 139

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score =  102 bits (256), Expect = 1e-26
 Identities = 31/131 (23%), Positives = 45/131 (34%), Gaps = 6/131 (4%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQC-V 59
            +T ++ SD G YQC V+   G    K  LLTV   PS      D    +      +C  
Sbjct: 87  NVTNLQLSDIGTYQCKVKKAPGVANKK-FLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEP 145

Query: 60  AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
            EGS      W +      M        L       + ++    E +G + C+  +  GS
Sbjct: 146 KEGSLPLQFEWQKLSDSQTMPTP----WLAEMTSPVISVKNASSEYSGTYSCTVQNRVGS 201

Query: 120 TTVRAFLQVTS 130
                 L V  
Sbjct: 202 DQCMLRLDVVP 212

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 87.4 bits (216), Expect = 8e-21
 Identities = 25/198 (12%), Positives = 54/198 (27%), Gaps = 39/198 (19%)

Query: 31  LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLP----SVFWTQEGSQVLMFPGNAY- 85
           L++  P   + + + +   L       C    SP       + W    S   +       
Sbjct: 1   LSITTPEQRIEKAKGETAYLP------CKFTLSPEDQGPLDIEWLISPSDNQIVDQVIIL 54

Query: 86  ---------------------GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA 124
                                 +   + + ++ +  +Q  D G + C      G    + 
Sbjct: 55  YSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKF 114

Query: 125 FLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPPEDTR 183
            L V        P       + +  + +   L C+   GS P    W K  +S       
Sbjct: 115 LLTVLV-----KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPW 169

Query: 184 INVSSSGSLQI-DVLRDD 200
           +   +S  + + +   + 
Sbjct: 170 LAEMTSPVISVKNASSEY 187

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 50.5 bits (120), Expect = 1e-07
 Identities = 22/166 (13%), Positives = 37/166 (22%), Gaps = 59/166 (35%)

Query: 139 VQVGPSNQTLPLHSVAFLPCQAVGSP----PPHIRWYKNGNSLPPEDTRINVSSSG---- 190
           +              A+LPC+   SP    P  I W  + +     D  I + S      
Sbjct: 3   ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYD 62

Query: 191 ----------------------SLQI-DVLRDD--------------------------- 200
                                 S+ + ++   D                           
Sbjct: 63  NYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKP 122

Query: 201 -FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS 245
                  D     G    L+C P +G       W+K      + + 
Sbjct: 123 SGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTP 168

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score =  103 bits (257), Expect = 5e-26
 Identities = 26/212 (12%), Positives = 50/212 (23%), Gaps = 20/212 (9%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
           +  + + +  G Y C   N +         + V  P    +         +  A  +C  
Sbjct: 60  IQEKAEATRTGTYTCSNSNGLTSSIY----VFVRDPAKLFLVGLPLFGKEDSDALVRCPL 115

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQK-EDAGFFVCSALSVAGS 119
               +      +   + L              +  + I+ V++        C+A      
Sbjct: 116 TDPQVSQYSLIECDGKSLPTDLT----FVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTW 171

Query: 120 TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP-HIRWYKNGNSLP 178
                F           P+V V  ++  L       + C         +  W K      
Sbjct: 172 LHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQ 231

Query: 179 P---------EDTRINVSSSGSLQI-DVLRDD 200
                          N     +L I     DD
Sbjct: 232 HIAQVKHNSWHRGDFNYERQETLTISSARVDD 263

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 88.6 bits (219), Expect = 9e-21
 Identities = 30/262 (11%), Positives = 58/262 (22%), Gaps = 56/262 (21%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
           +PPS      +  V      S  C+        V WT +              +   ++ 
Sbjct: 11  SPPSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTYF---------NEMVENKKN 57

Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVA 154
               +  +    G + CS  +   S+    ++ V       P  + +          S A
Sbjct: 58  EWIQEKAEATRTGTYTCSNSNGLTSSI---YVFVR-----DPAKLFLVGLPLFGKEDSDA 109

Query: 155 FLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD------------- 200
            + C             +      P D     +    + I +V R               
Sbjct: 110 LVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDG 169

Query: 201 ---------------------FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQF 239
                                         +  G+T  + C            W K    
Sbjct: 170 TWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQ 229

Query: 240 IDLESSKRVSILGDPWFDSRRS 261
               +  + +      F+  R 
Sbjct: 230 PQHIAQVKHNSWHRGDFNYERQ 251

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 77.8 bits (191), Expect = 8e-17
 Identities = 24/137 (17%), Positives = 42/137 (30%), Gaps = 10/137 (7%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTV----HAPPSFVVRPQDQKVGLNGIASFQ 57
               +       +C  Q       +    L V     A P   V      +      +  
Sbjct: 150 KNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVV 209

Query: 58  CVAEGSPLP-SVFWTQEGSQVLMFPGNAY-----GHLHVTQEGTLRIQGVQKEDAGFFVC 111
           C  +      +  W +   Q        +     G  +  ++ TL I   + +D+G F+C
Sbjct: 210 CTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMC 269

Query: 112 SALSVAGSTTVRAFLQV 128
            A +  GS  V   L+V
Sbjct: 270 YANNTFGSANVTTTLKV 286

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 15/130 (11%), Positives = 26/130 (20%), Gaps = 26/130 (20%)

Query: 129 TSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINV-- 186
            S  +  PP +    S   +       L C         +RW          + + N   
Sbjct: 5   ASPGEPSPPSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTYFNEMVENKKNEWI 60

Query: 187 ------------------SSSGSLQIDVL-RDDFRAEPKDTRVASGETALLECGPPKGQP 227
                               + S+ + V                    AL+ C P     
Sbjct: 61  QEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRC-PLTDPQ 119

Query: 228 EPTLHWKKNG 237
                  +  
Sbjct: 120 VSQYSLIECD 129

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 96.7 bits (241), Expect = 1e-25
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 4/97 (4%)

Query: 33  VHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
              PP  +  P +Q + ++G A  +C A G PLP + W +EG               + +
Sbjct: 5   SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPG----RDPRATIQE 60

Query: 93  EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
           +GTL+I+ ++  D G + C A S +G T+  A L VT
Sbjct: 61  QGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 82.4 bits (204), Expect = 3e-20
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 133 DTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSL 192
            + PPI+  GP+NQTL +   A L C+A G P P I W K G + P  D R  +   G+L
Sbjct: 5   SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTL 64

Query: 193 QI-DVLRDD 200
           QI ++   D
Sbjct: 65  QIKNLRISD 73

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 47.8 bits (114), Expect = 1e-07
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
               P +  +A   TALL+C    G P P + W K G         R +I   
Sbjct: 11  ILQGPANQTLAVDGTALLKC-KATGDPLPVISWLKEGFTFP-GRDPRATIQEQ 61

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 2  ITEVKKSDEGKYQCYVQNMVGERETKPALLTV 33
          I  ++ SD G Y C   +  GE     A+L V
Sbjct: 66 IKNLRISDTGTYTCVATSSSGETSWS-AVLDV 96

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score =  101 bits (253), Expect = 1e-25
 Identities = 36/190 (18%), Positives = 66/190 (34%), Gaps = 16/190 (8%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
           +    +     +  C V      +ET    +T+++ P+  V     +V      + +C A
Sbjct: 64  VSVTAEDEGTQRLTCAVILGNQSQETL-QTVTIYSFPAPNVILTKPEVSEGTEVTVKCEA 122

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA-LSVAGS 119
                 ++                     +     L ++   +++   F CSA L VAG 
Sbjct: 123 HPRAKVTLNGVPAQP--------------LGPRAQLLLKATPEDNGRSFSCSATLEVAGQ 168

Query: 120 TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP 179
              +   +   V   P    +  P N T P +S     CQA G+P P ++  K+G    P
Sbjct: 169 LIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP 228

Query: 180 EDTRINVSSS 189
               + V+  
Sbjct: 229 IGESVTVTRD 238

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 80.9 bits (199), Expect = 4e-18
 Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 20/133 (15%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGER---ETKPALLTVHAPPSFVVR--PQDQKVGLNGIAS 55
           ++    + +   + C     V  +   + +   L V   P    R  P +     N   +
Sbjct: 145 LLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQT 204

Query: 56  FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
             C A G+PLP +   ++G+  L                      V ++  G ++C A S
Sbjct: 205 PMCQAWGNPLPELKCLKDGTFPLP---------------IGESVTVTRDLEGTYLCRARS 249

Query: 116 VAGSTTVRAFLQV 128
             G  T    + V
Sbjct: 250 TQGEVTREVTVNV 262

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 72.8 bits (178), Expect = 4e-15
 Identities = 35/232 (15%), Positives = 66/232 (28%), Gaps = 35/232 (15%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQE 93
           A P  +V P+  +V      +  C  +G  P+             + P   YG+   + +
Sbjct: 4   ATPPQLVSPRVLEVDTQ--GTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAK 61

Query: 94  GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSV 153
            ++ +   + E      C+ +    S      + + S    P P V    +   +   + 
Sbjct: 62  ASVSVT-AEDEGTQRLTCAVILGNQSQETLQTVTIYS---FPAPNVI--LTKPEVSEGTE 115

Query: 154 AFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINV----------------------SSSGS 191
             + C+A       +         P     +                          + +
Sbjct: 116 VTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQT 175

Query: 192 LQIDVL---RDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 240
            ++ VL   R D R  P +            C    G P P L   K+G F 
Sbjct: 176 RELRVLYGPRLDERDCPGNWTWPENSQQTPMCQA-WGNPLPELKCLKDGTFP 226

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 97.1 bits (242), Expect = 1e-25
 Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 7/114 (6%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
            PP     P +Q V ++G     CVA GSP+P++ W ++G  V          +   + G
Sbjct: 7   GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQD----SRIKQLENG 62

Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTL 148
            L+I+  +  D G + C A + +G  T  A+++   V++   P+    P++  L
Sbjct: 63  VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIE---VQEFGVPVQPPRPTDPNL 113

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 83.3 bits (206), Expect = 3e-20
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 133 DTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSL 192
            + PP+++ GP NQT+ +     L C A GSP P I W K+G  +  +D+RI    +G L
Sbjct: 5   SSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVL 64

Query: 193 QI-DVLRDD 200
           QI      D
Sbjct: 65  QIRYAKLGD 73

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
            R  P +  VA   T +L C    G P PT+ W+K+G  +  + S R+  L +
Sbjct: 11  IRQGPVNQTVAVDGTFVLSC-VATGSPVPTILWRKDGVLVSTQDS-RIKQLEN 61

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 49.8 bits (119), Expect = 5e-08
 Identities = 12/48 (25%), Positives = 15/48 (31%), Gaps = 1/48 (2%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKV 48
            I   K  D G+Y C      GE     A + V      V  P+    
Sbjct: 65  QIRYAKLGDTGRYTCIASTPSGEATW-SAYIEVQEFGVPVQPPRPTDP 111

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 97.2 bits (242), Expect = 3e-25
 Identities = 32/143 (22%), Positives = 49/143 (34%), Gaps = 12/143 (8%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERE---TKPALLTVHAPPSFVVRPQDQKVGLNGIASFQC 58
           ++  K S          N V   +    + A    H  P F     D +V     A F C
Sbjct: 4   MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63

Query: 59  VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG----TLRIQGVQKEDAGFFVCSAL 114
             EG P P V W ++ + V         H  +  +     +L I  V  +D   + C A+
Sbjct: 64  KVEGYPDPEVMWFKDDNPV-----KESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV 118

Query: 115 SVAGSTTVRAFLQVTSVEDTPPP 137
           +  G  T  A L V ++      
Sbjct: 119 NSLGEATCTAELLVETMGKEGEG 141

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 62.9 bits (153), Expect = 2e-12
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 98  IQGV-QKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTP-PPIVQVGPSNQTLPLHSVAF 155
           I G+  ++ +G    S ++        AFL+  + E     P       +  +   S A 
Sbjct: 1   ISGMSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAAR 60

Query: 156 LPCQAVGSPPPHIRWYKNGNSLPP-EDTRINVSSSG--SLQI-DVLRDD 200
             C+  G P P + W+K+ N +      +I+    G  SL I +V  DD
Sbjct: 61  FDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDD 109

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
           F     D  V  G  A  +C   +G P+P + W K+     ++ S+   I  D 
Sbjct: 44  FTKTILDMEVVEGSAARFDC-KVEGYPDPEVMWFKDDN--PVKESRHFQIDYDE 94

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score =  101 bits (253), Expect = 5e-25
 Identities = 35/292 (11%), Positives = 77/292 (26%), Gaps = 69/292 (23%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
           +I  +K  D   Y C V++   E +       + A     +             +    +
Sbjct: 70  IIKNLKIEDSDTYICEVEDQKEEVQLLV--FGLTANSDTHLLQGQS-------LTLTLES 120

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
                PSV       +             +    TL +  ++ +D+G + C+ L      
Sbjct: 121 PPGSSPSVQCRSPRGKN------------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKV 168

Query: 121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE 180
             +  + V +        +      + +          + +      + W     S    
Sbjct: 169 EFKIDIVVLAF--QKASSIVYKKEGEQVEFSFPLAFTVEKLT-GSGELWWQAERASSSKS 225

Query: 181 ------------------DTRINVSSSGSLQIDVLRDDFR----------AEPKDTRV-- 210
                             D ++ +     L + + +   +           E K  ++  
Sbjct: 226 WITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQ 285

Query: 211 --------ASGETALLEC---GPPKGQPEPTLHWKKNGQFIDLESSKRVSIL 251
                   A+     L C   GP    P+  L  K   +  + + SKR   +
Sbjct: 286 EVNLVVMRATQLQKNLTCEVWGPTS--PKLMLSLKLENK--EAKVSKREKAV 333

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 81.0 bits (199), Expect = 1e-17
 Identities = 26/222 (11%), Positives = 51/222 (22%), Gaps = 50/222 (22%)

Query: 54  ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGH---------------LHVTQEGTLRI 98
               C A         W       ++    ++                 L       L I
Sbjct: 12  VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLII 71

Query: 99  QGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPC 158
           + ++ ED+  ++C              L V  +       +  G S           L  
Sbjct: 72  KNLKIEDSDTYICEVEDQKEEVQ----LLVFGLTANSDTHLLQGQS---------LTLTL 118

Query: 159 QAVGSPPPHIRWYKNGNSLPPED-----TRINVSSSG-------------SLQIDVLRDD 200
           ++     P ++                 +++ +  SG               +ID++   
Sbjct: 119 ESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA 178

Query: 201 FRAEPKDTRVASGETA----LLECGPPKGQPEPTLHWKKNGQ 238
           F+          GE       L     K      L W+    
Sbjct: 179 FQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERA 220

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 17/127 (13%), Positives = 35/127 (27%), Gaps = 26/127 (20%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
               + +  G     ++   G+   +  L         V+R    +  L       C   
Sbjct: 261 QALPQYAGSGNLTLALEAKTGKLHQEVNL--------VVMRATQLQKNL------TCEVW 306

Query: 62  GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
           G   P +  +      L                  +   V   +AG + C   S +G   
Sbjct: 307 GPTSPKLMLS------LKLENK-----EAKVSKREKAVWVLNPEAGMWQCLL-SDSGQVL 354

Query: 122 VRAFLQV 128
           + + ++V
Sbjct: 355 LESNIKV 361

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 6/73 (8%)

Query: 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGAL 272
           G+T  L C     +     HWK + Q   L +       G    + R       S     
Sbjct: 9   GDTVELTCTAS-QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDR-----ADSRRSLW 62

Query: 273 SDDQWKLIAKNIR 285
               + LI KN++
Sbjct: 63  DQGNFPLIIKNLK 75

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 99.6 bits (248), Expect = 6e-25
 Identities = 34/204 (16%), Positives = 65/204 (31%), Gaps = 26/204 (12%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQC-VA 60
           IT    +D G+Y+C          + P  L +H     +++   +        + +C   
Sbjct: 52  ITSASVNDSGEYRCQRGL---SGRSDPIQLEIHRGW-LLLQVSSRVFTEGEPLALRCHAW 107

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
           +   + +V + + G     F  N            L I        G + CS +     T
Sbjct: 108 KDKLVYNVLYYRNGKAFKFFHWN----------SNLTILKTNISHNGTYHCSGMGKHRYT 157

Query: 121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH---IRWYKNGNSL 177
           +    + V   E  P P++    ++  L  + V  L C+           + +     S 
Sbjct: 158 SAGISVTVK--ELFPAPVLNASVTSPLLEGNLVT-LSCETKLLLQRPGLQLYFSFYMGSK 214

Query: 178 PPEDTRINVSSSGSLQI-DVLRDD 200
                    ++S   QI    R+D
Sbjct: 215 TLR----GRNTSSEYQILTARRED 234

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 78.0 bits (192), Expect = 5e-17
 Identities = 34/245 (13%), Positives = 64/245 (26%), Gaps = 51/245 (20%)

Query: 37  PSFVVRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
               ++P    V      +  C     P   S  W   G+               T   +
Sbjct: 2   AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQ------------TSTPS 49

Query: 96  LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAF 155
            RI      D+G + C       S  ++  L++         ++Q   S++         
Sbjct: 50  YRITSASVNDSGEYRCQRGLSGRSDPIQ--LEIHR----GWLLLQ--VSSRVFTEGEPLA 101

Query: 156 LPCQAVGSPPPH-IRWYKNGNSLPPED-------TRINVSSSG---------------SL 192
           L C A      + + +Y+NG +             + N+S +G                +
Sbjct: 102 LRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGI 161

Query: 193 QIDVL---RDDFRAEPKDTRVASGETALLEC---GPPKGQPEPTLHWKKNGQFIDLESSK 246
            + V              + +  G    L C        +P   L++        L    
Sbjct: 162 SVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLL-QRPGLQLYFSFYMGSKTLRGRN 220

Query: 247 RVSIL 251
             S  
Sbjct: 221 TSSEY 225

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 69.6 bits (170), Expect = 5e-14
 Identities = 21/135 (15%), Positives = 39/135 (28%), Gaps = 17/135 (12%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS--FVVRPQDQKVGLNGIASFQCV 59
           I +   S  G Y C          +    +TV        +       +    + +  C 
Sbjct: 135 ILKTNISHNGTYHCSGMGKHRYT-SAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCE 193

Query: 60  AEGSPLPSV----FWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
            +           F    GS+ L                  +I   ++ED+G + C A +
Sbjct: 194 TKLLLQRPGLQLYFSFYMGSKTLR---------GRNTSSEYQILTARREDSGLYWCEAAT 244

Query: 116 VAGSTTVR-AFLQVT 129
             G+   R   L++ 
Sbjct: 245 EDGNVLKRSPELELQ 259

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 93.9 bits (234), Expect = 2e-24
 Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 31  LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV 90
           +     P+     ++Q   +       C A G+P P + W ++   ++         + +
Sbjct: 5   VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLV-----EDSGIVL 59

Query: 91  TQEG-TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTP 135
                 L I+ V+KED G + C A SV G   V AF  +   ++  
Sbjct: 60  KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT 105

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 68.1 bits (167), Expect = 8e-15
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 127 QVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINV 186
           Q+T +E   P I      NQT  +     + C A G+PPP I W+K+  +L  +   +  
Sbjct: 2   QLTVLERVAPTITG-NLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK 60

Query: 187 SSSGSLQI-DVLRDD 200
             + +L I  V ++D
Sbjct: 61  DGNRNLTIRRVRKED 75

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
                ++   + GE+  + C    G P P + W K+ +   L     + +   
Sbjct: 13  ITGNLENQTTSIGESIEVSC-TASGNPPPQIMWFKDNE--TLVEDSGIVLKDG 62

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSF 39
           I  V+K DEG Y C   +++G  + + A   +      
Sbjct: 68  IRRVRKEDEGLYTCQACSVLGCAKVE-AFFIIEGAQEK 104

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 99.0 bits (246), Expect = 2e-24
 Identities = 26/221 (11%), Positives = 52/221 (23%), Gaps = 33/221 (14%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS---FVVRPQDQKVGL---NGIA 54
            +T +   D G+Y C   +  G    +   L +  P     F+    ++           
Sbjct: 54  TLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEI 113

Query: 55  SFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 114
           +  C     P   V   ++            G + +      +       +   ++C   
Sbjct: 114 TIPCRVTD-PQLVVTLHEKK-----------GDVALPVPYDHQRGFSGIFEDRSYICKTT 161

Query: 115 SVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNG 174
                    A+             V V      +       L C  +G+   +  W    
Sbjct: 162 IGDREVDSDAYYVY--RLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPR 219

Query: 175 NSLPP-------EDTRINVSSSGSLQIDVLRDDFRAEPKDT 208
                           +       L I        AE +D+
Sbjct: 220 KESGRLVEPVTDFLLDMPYHIRSILHIP------SAELEDS 254

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 90.9 bits (225), Expect = 1e-21
 Identities = 19/139 (13%), Positives = 38/139 (27%), Gaps = 7/139 (5%)

Query: 5   VKKSDEGKYQCYVQNMVGERETKPALLTV--HAPPSFVVRPQDQKVGLNGIASFQCVAEG 62
               ++  Y C       E ++    +     +  +  V      V      +  C+  G
Sbjct: 148 SGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIG 207

Query: 63  SPLPSVFWTQEGSQVLMFPGNAYGHL---HVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
           + + +  WT    +           L          L I   + ED+G + C+       
Sbjct: 208 NEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVND 267

Query: 120 TTVRAFLQVTSVEDTPPPI 138
                 + +T VE      
Sbjct: 268 HQDEKAINITVVE--SGHH 284

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 82.1 bits (202), Expect = 3e-18
 Identities = 31/227 (13%), Positives = 47/227 (20%), Gaps = 36/227 (15%)

Query: 54  ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
               C         V W +   +    P         T    L +  +   D G + C+ 
Sbjct: 18  FVLTCSGSAP----VVWERMSQEP---PQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTH 70

Query: 114 LSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQ--TLPLHSVAFLPCQAVGSPPPHIRWY 171
               G  T         V D     +          L   +   +PC+    P   +  +
Sbjct: 71  NDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLH 129

Query: 172 KNGNSLPPEDT--------------------RINVSSSGSLQIDVLRD-----DFRAEPK 206
           +    +                          I      S    V R      +      
Sbjct: 130 EKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAV 189

Query: 207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
            T V  GE   L C    G       W    +            L D
Sbjct: 190 QTVVRQGENITLMC-IVIGNEVVNFEWTYPRKESGRLVEPVTDFLLD 235

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 96.2 bits (239), Expect = 3e-24
 Identities = 27/182 (14%), Positives = 51/182 (28%), Gaps = 20/182 (10%)

Query: 37  PSFVVRPQDQKVGLNGIASFQ-CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG- 94
             F       ++   G   F     + S    V +     ++  F G  Y        G 
Sbjct: 3   DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEI--FEGPKYKMHIDRNTGI 60

Query: 95  -TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDT--------PPPIVQVGPS- 144
             + ++ +Q ED G +         +      L     +             I + GP  
Sbjct: 61  IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 120

Query: 145 ----NQTLPLHSVAFLPCQAVGSPPP-HIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLR 198
               +  +       L C+        HI WYK+   +  ++         +L I +  +
Sbjct: 121 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSK 180

Query: 199 DD 200
            D
Sbjct: 181 KD 182

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 72.7 bits (178), Expect = 2e-15
 Identities = 25/149 (16%), Positives = 44/149 (29%), Gaps = 28/149 (18%)

Query: 1   MITEVKKSDEGKYQCYVQNMVG------------------ERETKPALLTVHAPPSFVVR 42
            + +++  DEG Y   +Q+                     E E +         P FV  
Sbjct: 64  FMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV-E 122

Query: 43  PQDQKVGLNGIASFQCVAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG--TLRIQ 99
               +V        +C          + W ++  ++ +         H  ++G  TL I 
Sbjct: 123 YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV------DEKHDFKDGICTLLIT 176

Query: 100 GVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
              K+DAG +        G    R  L  
Sbjct: 177 EFSKKDAGIYEVILKDDRGKDKSRLKLVD 205

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 56.9 bits (137), Expect = 6e-10
 Identities = 16/169 (9%), Positives = 41/169 (24%), Gaps = 53/169 (31%)

Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP-EDTRINVSSSG---S 191
            P  +   + + L    V F       S    + +  N   +      ++++  +     
Sbjct: 3   DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62

Query: 192 LQI-DVLRDD-----FRA-----------------------------------------E 204
           + +  +  +D     F+                                          E
Sbjct: 63  MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122

Query: 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
                V      LL+C     + E  + W K+ +  ++   ++      
Sbjct: 123 YLSWEVTGECNVLLKCKVANIKKETHIVWYKDER--EISVDEKHDFKDG 169

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 4/54 (7%), Positives = 13/54 (24%), Gaps = 2/54 (3%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
           F        +             K      +++  N +  ++    +  +  D 
Sbjct: 5   FTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEK--EIFEGPKYKMHIDR 56

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 95.7 bits (238), Expect = 5e-24
 Identities = 31/177 (17%), Positives = 47/177 (26%), Gaps = 23/177 (12%)

Query: 44  QDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQK 103
           + Q     GI  +  V        V W+  GS +     +        ++  L+I     
Sbjct: 12  KIQSTA-EGIQLYSFVTYYVEDLKVNWSHNGSAI--RYSDRVKTGVTGEQIWLQINEPTP 68

Query: 104 EDAGFFVCSALSVAGSTTVRAFLQV----------------TSVEDTPPPIVQVGPSNQT 147
            D G +V               L                     E     ++   P   T
Sbjct: 69  NDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVT 128

Query: 148 LPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED---TRINVSSSGSLQI-DVLRDD 200
           +       L C   G PPP + W KN  +L   D    +     +    I  V   D
Sbjct: 129 IQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTAD 185

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 93.0 bits (231), Expect = 6e-23
 Identities = 25/149 (16%), Positives = 41/149 (27%), Gaps = 23/149 (15%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA---------------------PPSF 39
            I E   +D+GKY   + +     +     L+  A                         
Sbjct: 62  QINEPTPNDKGKYVMELFDGKTGHQKT-VDLSGQAYDEAYAEFQRLKQAAIAEKNRARVL 120

Query: 40  VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQ 99
              P    +      +  C   G P P V W +   + L    +        +     I 
Sbjct: 121 GGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNE-KALAQTDHCNLKFEAGRTAYFTIN 179

Query: 100 GVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
           GV   D+G +     +  GS T    + V
Sbjct: 180 GVSTADSGKYGLVVKNKYGSETSDFTVSV 208

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 2/44 (4%)

Query: 210 VASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
            ++ E   L         +  ++W  NG    +  S RV     
Sbjct: 14  QSTAEGIQLYSFVTYYVEDLKVNWSHNGS--AIRYSDRVKTGVT 55

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 96.5 bits (239), Expect = 6e-24
 Identities = 24/157 (15%), Positives = 38/157 (24%), Gaps = 27/157 (17%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH--------APPSFVVRPQDQKVGLNGI 53
           +T V   D G+Y C V       E      +V         +    V   +  +V     
Sbjct: 94  LTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGND 153

Query: 54  ASFQCVAEGSPLPSVFWTQEGSQV-------------------LMFPGNAYGHLHVTQEG 94
            +  C        +V W    +                       F     G    +   
Sbjct: 154 ITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGAR 213

Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSV 131
            L I+  +  DAG   C   +  G         +  V
Sbjct: 214 NLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV 250

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 79.6 bits (195), Expect = 1e-17
 Identities = 28/230 (12%), Positives = 57/230 (24%), Gaps = 64/230 (27%)

Query: 29  ALLTVHAPPSFVVRPQDQKVGLNGIASFQC---VAEGSPLPSVFWTQEGSQ--------- 76
           +++TV           + +V   G     C   +A  +  P + W +  S          
Sbjct: 1   SIMTVRTTH------TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKG 54

Query: 77  --VLMFPGNAYGHLHVTQE----------------GTLRIQGVQKEDAGFFVCSALSVAG 118
                  G  +      +E                 TLR+  V  +D G + C     + 
Sbjct: 55  NYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSI 114

Query: 119 STTV----RAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNG 174
            T      ++ +   +       +         +   +   + C        ++ WY   
Sbjct: 115 RTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGP 174

Query: 175 NSLPPEDT-----------------------RINVSSSGSLQI-DVLRDD 200
                 +T                       R + S + +L I      D
Sbjct: 175 TFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITD 224

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 91.7 bits (228), Expect = 2e-23
 Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 1/117 (0%)

Query: 21  VGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMF 80
           +G      +       P F+ +PQ +KV        +C     P P +FW +    V   
Sbjct: 1   MGHHHHHHSH-EHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFN 59

Query: 81  PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
                 +   T   TL I+ V K+DAG++  SA++ AG TT    L VT+  +   P
Sbjct: 60  TDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 130 SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS 189
           S E    P+    P ++ +       L CQ    PPP + W +N   +     RI++   
Sbjct: 9   SHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQD 68

Query: 190 G----SLQI-DVLRDD 200
                +L I DV + D
Sbjct: 69  NTGRVTLLIKDVNKKD 84

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
           F  +P+  +V  G++  LEC      P P L WK+N + +   ++ R+S+  D
Sbjct: 18  FIYKPQSKKVLEGDSVKLEC-QISAIPPPKLFWKRNNEMVQ-FNTDRISLYQD 68

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVV 41
           +I +V K D G Y     N  G        L V A P+  +
Sbjct: 76  LIKDVNKKDAGWYTVSAVNEAGVTTCN-TRLDVTARPNQTL 115

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 93.1 bits (231), Expect = 3e-23
 Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 13/133 (9%)

Query: 57  QCVAEGSPLPSVFWTQEGSQVLMFPGNAY-----GHLHVTQEGTLRIQGVQKEDAGFFVC 111
                   +  V W +  + V  F          G   +   G L+I+ + ++D+G +  
Sbjct: 19  PNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNV 78

Query: 112 SALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWY 171
           +  S  G+  +   L +  +E    P++    SN T        L C+ +      ++ Y
Sbjct: 79  TVYSTNGTRILNKALDLRILEMVSKPMIYWECSNAT--------LTCEVLEGTDVELKLY 130

Query: 172 KNGNSLPPEDTRI 184
           +    L     + 
Sbjct: 131 QGKEHLRSLRQKT 143

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 50.0 bits (119), Expect = 9e-08
 Identities = 18/136 (13%), Positives = 39/136 (28%), Gaps = 37/136 (27%)

Query: 151 HSVAF-LPCQAVGSPPPHIRWYKNGNSL---------PPEDTRINVSSSGSLQI-DVLRD 199
           H +   +P   +      +RW +    +           +     + ++G L+I ++ RD
Sbjct: 12  HGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRD 71

Query: 200 D----------------------FRAEPKDTR---VASGETALLECGPPKGQPEPTLHWK 234
           D                       R     ++         A L C   +G  +  L   
Sbjct: 72  DSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEG-TDVELKLY 130

Query: 235 KNGQFIDLESSKRVSI 250
           +  + +     K +S 
Sbjct: 131 QGKEHLRSLRQKTMSY 146

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 48.0 bits (114), Expect = 5e-07
 Identities = 20/114 (17%), Positives = 29/114 (25%), Gaps = 19/114 (16%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPAL-LTVHAPPSFVVRPQDQKVGLNGIASFQCV 59
            I  + + D G Y   V +  G R    AL L +    S   +P       N  A+  C 
Sbjct: 64  KIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVS---KPMIYWECSN--ATLTCE 118

Query: 60  AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
                   +   Q                H+       +          F C A
Sbjct: 119 VLEGTDVELKLYQGKE-------------HLRSLRQKTMSYQWTNLRAPFKCKA 159

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 95.8 bits (237), Expect = 2e-22
 Identities = 34/202 (16%), Positives = 62/202 (30%), Gaps = 10/202 (4%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLN--------G 52
           +I +++ SD G+Y C   +     +    L  +   P  V       V  +         
Sbjct: 188 VINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVAN 247

Query: 53  IASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG-TLRIQGVQKEDAGFFVC 111
           +A F C         V     G +   F G    +        ++ I G++KEDAG ++C
Sbjct: 248 VAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLC 307

Query: 112 SALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWY 171
            A S                 +     +   P+       S   + C         I+++
Sbjct: 308 GAHSDGQLQEGSPIQAWQLFVN-EESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYW 366

Query: 172 KNGNSLPPEDTRINVSSSGSLQ 193
                       + V S G ++
Sbjct: 367 CLWEGAQNGRCPLLVDSEGWVK 388

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 93.5 bits (231), Expect = 1e-21
 Identities = 46/329 (13%), Positives = 95/329 (28%), Gaps = 82/329 (24%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
           I ++ + D G+Y+C +        +    L V   P  +   +   V L    +  C  +
Sbjct: 79  IAQLSQDDSGRYKCGLGI-NSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFK 137

Query: 62  GSPLPSVFW-------------TQEGSQVLMFPGNAYGHLHVTQEG--TLRIQGVQKEDA 106
                                    G     + G     +  T +   ++ I  ++  DA
Sbjct: 138 TENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDA 197

Query: 107 GFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLH--------SVAFLPC 158
           G ++C A   + S    A LQV      P P +       ++  H        +VA   C
Sbjct: 198 GQYLCQAGDDSNSNKKNADLQVL----KPEPELVYEDLRGSVTFHCALGPEVANVAKFLC 253

Query: 159 QAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG-----SLQI-DVLRDD------------ 200
           +        +     G   P  + RI ++        S+ I  + ++D            
Sbjct: 254 RQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDG 313

Query: 201 --------------------FRAEPKDTRVASGETALLECGPPKGQPEPTLHW------- 233
                                   P   +  +G +  + C P   +   ++ +       
Sbjct: 314 QLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLC-PYNRKESKSIKYWCLWEGA 372

Query: 234 --------KKNGQFIDLESSKRVSILGDP 254
                     +  ++  +   R+S+L +P
Sbjct: 373 QNGRCPLLVDSEGWVKAQYEGRLSLLEEP 401

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 84.7 bits (208), Expect = 1e-18
 Identities = 37/215 (17%), Positives = 62/215 (28%), Gaps = 25/215 (11%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLT---VHAPPSFVVRPQDQKVGLNGIASFQ 57
           +IT ++K D G+Y C   +    +E  P       V+   +    P   K       +  
Sbjct: 293 VITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVL 352

Query: 58  CVAEGSPLPSVFW--TQEGSQVLMFPGNAY--GHLHVTQEG-------------TLRIQG 100
           C        S+ +    EG+Q    P      G +    EG             T+ +  
Sbjct: 353 CPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQ 412

Query: 101 VQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA 160
           +   DAGF+ C         T      +    +   P        +TL +      PC+ 
Sbjct: 413 LTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVP--CHFPCKF 470

Query: 161 VGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQID 195
                   +W   G    P     +   S +    
Sbjct: 471 SSYEKYWCKWNNTGCQALPSQ---DEGPSKAFVNC 502

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 75.0 bits (183), Expect = 2e-15
 Identities = 26/175 (14%), Positives = 44/175 (25%), Gaps = 10/175 (5%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGI--ASFQCV 59
           + ++   D G Y C        R T    +    P   V       +G        F C 
Sbjct: 410 LNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCK 469

Query: 60  AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE-----GTLRIQGVQKEDAGFFVCSAL 114
                     W   G Q L           V  +      +L +  V + D G++ C   
Sbjct: 470 FSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVK 529

Query: 115 S-VAGSTTVRAFLQVTSVEDTPPPIVQV--GPSNQTLPLHSVAFLPCQAVGSPPP 166
                  T   ++ V   +      V +    +     +    F   +      P
Sbjct: 530 QGHFYGETAAVYVAVEERKAAGSRDVSLAKADAAPDEKVLDSGFREIENKAIQDP 584

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 51.5 bits (122), Expect = 1e-07
 Identities = 20/160 (12%), Positives = 46/160 (28%), Gaps = 22/160 (13%)

Query: 38  SFVVRPQDQKVGLNGIASFQCVAE---GSPLPSVFWTQEGSQVLMFPGNAY-GHLHVTQE 93
           S +  P++         S  C       +     +W ++G++       +  G++     
Sbjct: 2   SPIFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYA 61

Query: 94  G-------------TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQ 140
           G              + I  + ++D+G + C     +   +        S+E +  P + 
Sbjct: 62  GRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDV-----SLEVSQGPGLL 116

Query: 141 VGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE 180
                 T+ L     + C          +       L P 
Sbjct: 117 NDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPV 156

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 44.2 bits (103), Expect = 3e-05
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
            +  V ++DEG Y C V+      ET    + V    +     +D  +     A  + V 
Sbjct: 512 TLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAG--SRDVSLAKADAAPDEKVL 569

Query: 61  EGSP 64
           +   
Sbjct: 570 DSGF 573

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 86.8 bits (215), Expect = 1e-21
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 6/111 (5%)

Query: 29  ALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHL 88
           +L     PP  V  P D  V     A+  C AEG P P++ W + G +V     +   H 
Sbjct: 2   SLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR 61

Query: 89  HVTQEGTLRIQGVQ-----KEDAGFFVCSALSVAGS-TTVRAFLQVTSVED 133
            +   G+L    +      + D G +VC A +  G   +  A L+V +   
Sbjct: 62  MLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAH 112

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 66.8 bits (163), Expect = 4e-14
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 131 VEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED----TRINV 186
            ED PP IV+  PS+  +     A L C+A G P P I WYK G  +  +     +   +
Sbjct: 5   QEDFPPRIVEH-PSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63

Query: 187 SSSGSLQIDVLRDDFRAEPKDT 208
             SGSL    +    R    D 
Sbjct: 64  LPSGSLFFLRIVHG-RKSRPDE 84

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 190 GSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVS 249
           GSL+ +         P D  V+ GE A L C   +G+P PT+ W K G+ ++ +     S
Sbjct: 1   GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPRS 59

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 47.5 bits (113), Expect = 3e-07
 Identities = 12/41 (29%), Positives = 17/41 (41%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVV 41
           +     + DEG Y C  +N +GE  +  A L V A      
Sbjct: 75  VHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHH 115

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 85.8 bits (213), Expect = 2e-21
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 8/102 (7%)

Query: 33  VHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
           + + P  V   QD  V  + +A F   A G P P+  WT++G  +    G   G   +++
Sbjct: 3   ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAI--TQG---GKYKLSE 57

Query: 93  EG---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSV 131
           +     L I      D+G + C+  + AGS +    L + ++
Sbjct: 58  DKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKAI 99

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG---SL 192
            P++  G  + T+   SVA    +A G P P   W K+G ++     +  +S       L
Sbjct: 6   KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGG-KYKLSEDKGGFFL 64

Query: 193 QI-DVLRDD 200
           +I      D
Sbjct: 65  EIHKTDTSD 73

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 48.4 bits (116), Expect = 7e-08
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
                +DT V+S   A        G+P PT  W K+G+   +    +  +  D
Sbjct: 9   IVTGLQDTTVSSDSVAKFAV-KATGEPRPTAIWTKDGK--AITQGGKYKLSED 58

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 2  ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA 35
          I +   SD G Y C V+N  G   +    LT+ A
Sbjct: 66 IHKTDTSDSGLYTCTVKNSAGSVSSS-CKLTIKA 98

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 88.0 bits (218), Expect = 2e-21
 Identities = 21/143 (14%), Positives = 43/143 (30%), Gaps = 15/143 (10%)

Query: 57  QCVAEGSPLPSVFWTQEGSQVLMF-------PGNAYGHLHVTQEGTLRIQGVQKEDAGFF 109
                   +  + W +   +  +                 + + GTL+I+ ++ +D   +
Sbjct: 22  PSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIY 81

Query: 110 VCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR 169
             S     G   +     +   E    P +     N T        L C+ +    P + 
Sbjct: 82  KVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTT--------LTCEVMNGTDPELN 133

Query: 170 WYKNGNSLPPEDTRINVSSSGSL 192
            Y++G  L      I    + SL
Sbjct: 134 LYQDGKHLKLSQRVITHKWTTSL 156

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 61.1 bits (148), Expect = 2e-11
 Identities = 17/129 (13%), Positives = 38/129 (29%), Gaps = 19/129 (14%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPAL-LTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
           I  +K  D+  Y+  + +  G+   +    L +    S   +P+     +N   +  C  
Sbjct: 70  IKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVS---KPKISWTCIN--TTLTCEV 124

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
                P +   Q+G              H+     +         +  F C+A +     
Sbjct: 125 MNGTDPELNLYQDGK-------------HLKLSQRVITHKWTTSLSAKFKCTAGNKVSKE 171

Query: 121 TVRAFLQVT 129
           +    +   
Sbjct: 172 SSVEPVSCP 180

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 53.7 bits (129), Expect = 6e-09
 Identities = 21/151 (13%), Positives = 40/151 (26%), Gaps = 42/151 (27%)

Query: 132 EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYK-----------NGNSLPPE 180
           ++    +   G   Q + L     +P   +      I+W K                  E
Sbjct: 1   KEITNALETWGALGQDINLD----IPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKE 56

Query: 181 DTRINVSSSGSLQI-DVLRDD-------------------------FRAEPKDTRVASGE 214
                +  +G+L+I  +  DD                              K     +  
Sbjct: 57  KDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCI 116

Query: 215 TALLECGPPKGQPEPTLHWKKNGQFIDLESS 245
              L C    G  +P L+  ++G+ + L   
Sbjct: 117 NTTLTCEVMNG-TDPELNLYQDGKHLKLSQR 146

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 85.1 bits (211), Expect = 4e-21
 Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 5/100 (5%)

Query: 29  ALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHL 88
               +   PSF    +D  V        QC   G+P+P + W   G  +           
Sbjct: 4   GSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI-----QYARST 58

Query: 89  HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
                  L IQ    ED G + C A +  G  +  A++ V
Sbjct: 59  CEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 57.7 bits (140), Expect = 4e-11
 Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 2/66 (3%)

Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI- 194
            P       +  +       L C   G+P P I W  NG  +         +    L I 
Sbjct: 11  APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQY-ARSTCEAGVAELHIQ 69

Query: 195 DVLRDD 200
           D L +D
Sbjct: 70  DALPED 75

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
           F +  KD  V  G+  +L+C   +G P P + W  NGQ   ++ ++     G 
Sbjct: 14  FSSVLKDCAVIEGQDFVLQC-SVRGTPVPRITWLLNGQ--PIQYARSTCEAGV 63

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 1  MITEVKKSDEGKYQCYVQNMVGERETKPALLTVH 34
           I +    D G Y C  +N +G+     A +TVH
Sbjct: 67 HIQDALPEDHGTYTCLAENALGQVSCS-AWVTVH 99

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 84.4 bits (209), Expect = 5e-21
 Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 11/101 (10%)

Query: 32  TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
           +       VV P+   V   G  +  C     P P + W ++G             L + 
Sbjct: 6   SGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVP-----------LPLP 54

Query: 92  QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVE 132
               L +  +  +D G + C A   +        + ++ +E
Sbjct: 55  PSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIE 95

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 61.7 bits (150), Expect = 1e-12
 Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 8/66 (12%)

Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI- 194
              + V P    +       L C+    P P I W K+G  LP          S  L + 
Sbjct: 10  EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPL-------PPSPVLILP 62

Query: 195 DVLRDD 200
           ++   D
Sbjct: 63  EIGPQD 68

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSI 250
              EP+   VA G T  L C  P  QP P +HW K+G  + L  S  + +
Sbjct: 13  LVVEPEGGAVAPGGTVTLTCEVP-AQPSPQIHWMKDGVPLPLPPSPVLIL 61

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 7/37 (18%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 1  MITEVKKSDEGKYQCYVQNMVGE-RETKPALLTVHAP 36
          ++ E+   D+G Y C   +     +E++   +++  P
Sbjct: 60 ILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 85.5 bits (211), Expect = 6e-21
 Identities = 25/120 (20%), Positives = 39/120 (32%), Gaps = 11/120 (9%)

Query: 32  TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPG--------- 82
                  FV  P  Q+  + G     C A GSP+P + W  EG                 
Sbjct: 17  RGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLD 76

Query: 83  --NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQ 140
             + +   H     T+ I  + +ED G + C A +      +    +V  V      +V 
Sbjct: 77  RVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAVVLVL 136

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 58.1 bits (140), Expect = 7e-11
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 17/90 (18%)

Query: 127 QVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE------ 180
            +          VQ  P +Q   +     L C+AVGSP P I+W+  G            
Sbjct: 13  GLVPRGSHMAGFVQ-APLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWD 71

Query: 181 ---------DTRINVSSSGSLQI-DVLRDD 200
                        +  ++ ++ I  ++ +D
Sbjct: 72  GARLDRVHIHATYHQHAASTISIDTLVEED 101

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 9/40 (22%), Positives = 12/40 (30%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVV 41
           I  + + D G Y+C   N         A          VV
Sbjct: 94  IDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAVV 133

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 246
           F   P   +   G +  L C    G P P + W   GQ  +   S+
Sbjct: 24  FVQAPLSQQRWVGGSVELHCE-AVGSPVPEIQWWFEGQGPNDICSQ 68

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 86.6 bits (214), Expect = 8e-21
 Identities = 23/135 (17%), Positives = 37/135 (27%), Gaps = 10/135 (7%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
                    G+Y C               + +H PP        + +     A   C +E
Sbjct: 53  FKVDSDDQWGEYSCVFLPEPMGTAN----IQLHGPPRVKAVKSSEHINEGETAMLVCKSE 108

Query: 62  GSPLP-SVFWTQEGSQVLMFPGNA----YGHLHVTQEGTLRIQGVQ-KEDAGFFVCSALS 115
             P      W +          N     +          L I+ +  + D G + C+  S
Sbjct: 109 SVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTS 168

Query: 116 VAGSTTVRAFLQVTS 130
             GS      L+V S
Sbjct: 169 SKGSDQAIITLRVRS 183

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 76.2 bits (187), Expect = 6e-17
 Identities = 28/152 (18%), Positives = 44/152 (28%), Gaps = 28/152 (18%)

Query: 54  ASFQCVAEGSPLP--SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
               C    S        W + G  +                     +    +  G + C
Sbjct: 16  ILLTCSLNDSATEVTGHRWLKGGVVL---------KEDALPGQKTEFKVDSDDQWGEYSC 66

Query: 112 SALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP-HIRW 170
                       A +Q+       PP V+   S++ +     A L C++   PP     W
Sbjct: 67  VF---LPEPMGTANIQLH-----GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAW 118

Query: 171 YKNGNSLPPE-----DTRINVSSSG---SLQI 194
           YK  +S         ++R  VSSS     L I
Sbjct: 119 YKITDSEDKALMNGSESRFFVSSSQGRSELHI 150

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 52.7 bits (126), Expect = 1e-08
 Identities = 26/146 (17%), Positives = 34/146 (23%), Gaps = 43/146 (29%)

Query: 144 SNQTLPLHSVAFLPCQAVGSPPP--HIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDD- 200
                 L S   L C    S       RW K G  L  +            +  V  DD 
Sbjct: 6   FTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL-----PGQKTEFKVDSDDQ 60

Query: 201 -------------------------FRAEPKDTRVASGETALLEC---GPPKGQPEPTLH 232
                                     +A      +  GETA+L C     P   P     
Sbjct: 61  WGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVP---PVTDWA 117

Query: 233 WKK----NGQFIDLESSKRVSILGDP 254
           W K      + +   S  R  +    
Sbjct: 118 WYKITDSEDKALMNGSESRFFVSSSQ 143

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 87.0 bits (215), Expect = 8e-21
 Identities = 36/186 (19%), Positives = 61/186 (32%), Gaps = 29/186 (15%)

Query: 31  LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVL------------ 78
           +T+ A P  V    +                   L +  W +  +  +            
Sbjct: 2   VTIEAVPPQVAEDNN--------VLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSN 53

Query: 79  -MFPGNAY-GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP 136
             F G AY G   +   G+L  Q +  +D G +           T      V      P 
Sbjct: 54  MNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQA---TVRFHVHQPV 110

Query: 137 PIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGS-LQID 195
               +  +N T+       L C +      +I+W  N  SL   + R+ +S + S L+ID
Sbjct: 111 TQPFLQVTNTTVKELDSVTLTCLS-NDIGANIQWLFNSQSLQLTE-RMTLSQNNSILRID 168

Query: 196 -VLRDD 200
            + R+D
Sbjct: 169 PIKRED 174

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 79.3 bits (195), Expect = 6e-18
 Identities = 19/144 (13%), Positives = 43/144 (29%), Gaps = 13/144 (9%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTV-HAPPSFVVRPQDQKVGLNGIASFQCV 59
           +   +   D G Y   + +    R        V        ++  +  V      +  C+
Sbjct: 74  LFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCL 133

Query: 60  AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG-TLRIQGVQKEDAGFFVCSALSVAG 118
           +      ++ W      + +        + ++Q    LRI  +++EDAG + C   +   
Sbjct: 134 SNDIG-ANIQWLFNSQSLQLTE-----RMTLSQNNSILRIDPIKREDAGEYQCEISNPVS 187

Query: 119 STTVRAF-LQVTSVEDTPPPIVQV 141
                +  L +       P     
Sbjct: 188 VRRSNSIKLDIIF----DPHHHHH 207

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 54.3 bits (130), Expect = 5e-09
 Identities = 24/176 (13%), Positives = 47/176 (26%), Gaps = 64/176 (36%)

Query: 127 QVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT---- 182
           +VT +E  PP +     +           L    +        WYK   +   ++     
Sbjct: 1   EVT-IEAVPPQVA-EDNN---------VLLLVHNLPLALGAFAWYKGNTTAIDKEIARFV 49

Query: 183 --------------RINVSSSGSLQI-DVLRDD--------------------------- 200
                         R  + S+GSL    +   D                           
Sbjct: 50  PNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQP 109

Query: 201 ---FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
                 +  +T V   ++  L C          + W  N Q   L+ ++R+++  +
Sbjct: 110 VTQPFLQVTNTTVKELDSVTLTCLS--NDIGANIQWLFNSQ--SLQLTERMTLSQN 161

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 83.9 bits (208), Expect = 8e-21
 Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 7/97 (7%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
           APP+F V   DQ V            +G P P V W +    V               EG
Sbjct: 4   APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQ----RRFAEEAEG 59

Query: 95  ---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
               LRI   ++ DAGF+ C A++  G+    A L+V
Sbjct: 60  GLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 64.2 bits (157), Expect = 2e-13
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG---SL 192
           PP  +V   +Q++       +  +  G P P + W +N   + P+  R    + G    L
Sbjct: 5   PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRL 64

Query: 193 QI-DVLRDD 200
           +I    R D
Sbjct: 65  RILAAERGD 73

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
           F+    D  V  G+  ++     +G+P+P + W +N Q +     +R +   +
Sbjct: 8   FKVSLMDQSVREGQDVIMSI-RVQGEPKPVVSWLRNRQPVR-PDQRRFAEEAE 58

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 1  MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA 35
           I   ++ D G Y C   N  G R+ + A L V  
Sbjct: 65 RILAAERGDAGFYTCKAVNEYGARQCE-ARLEVRG 98

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 89.4 bits (221), Expect = 1e-20
 Identities = 27/174 (15%), Positives = 44/174 (25%), Gaps = 22/174 (12%)

Query: 37  PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTL 96
           P+  V+  +  V +      +C  EG  L    W     +             +   G  
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQ---SATVMKSGGLPSLGLT 215

Query: 97  RIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFL 156
                   +     C A +  G   V   + V+                 T        +
Sbjct: 216 LANVTSDLNRKNVTCWAENDVGRAEVSVQVNVS---------FPASVQLHTAVEMHHWCI 266

Query: 157 PCQAVGSPPPHIRWYKNGNSLPP---------EDTRINVSSSGSLQI-DVLRDD 200
           P    G P P +RW  NG+ L           E         G L++      +
Sbjct: 267 PFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVN 320

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 89.4 bits (221), Expect = 1e-20
 Identities = 22/134 (16%), Positives = 36/134 (26%), Gaps = 10/134 (7%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
           +       +     C+ +N VG  E      +V    SF    Q                
Sbjct: 216 LANVTSDLNRKNVTCWAENDVGRAEV-----SVQVNVSFPASVQLHTAVEMHHWCIPFSV 270

Query: 61  EGSPLPSVFWTQEGSQVLMFP-----GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
           +G P PS+ W   GS +                   + G LR+      + G +   A +
Sbjct: 271 DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN 330

Query: 116 VAGSTTVRAFLQVT 129
             G  +        
Sbjct: 331 PFGQASASIMAAFM 344

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 67.8 bits (165), Expect = 3e-13
 Identities = 28/177 (15%), Positives = 48/177 (27%), Gaps = 31/177 (17%)

Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI 194
             P ++V   N ++ +     L CQ  G       W            +     S  L +
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 216

Query: 195 -DVLRDD-------------------------FRAEPKDTRVASGETALLECGPPKGQPE 228
            +V  D                          F A  +           +      GQP 
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPF-SVDGQPA 275

Query: 229 PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDD--QWKLIAKN 283
           P+L W  NG  ++  S      L     ++ R   +   +      +   + L+A N
Sbjct: 276 PSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLR--LNQPTHVNNGNYTLLAAN 330

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 83.1 bits (206), Expect = 2e-20
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
            PP F+  P++  +             G P P V W   G  V     +    + V+++G
Sbjct: 4   GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTV---QSDDLHKMIVSEKG 60

Query: 95  --TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVE 132
             +L  + V+  DAG + C A + AG  T    L V + E
Sbjct: 61  LHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 63.5 bits (155), Expect = 4e-13
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT-RINVSSSG--S 191
           PP  +QV P N ++       +  +  G P P + WY NG ++  +D  ++ VS  G  S
Sbjct: 5   PPRFIQV-PENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63

Query: 192 LQI-DVLRDD 200
           L    V   D
Sbjct: 64  LIFEVVRASD 73

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 201 FRAEPKDTRVASGETALLECGPPK--GQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
           F   P++  +  G    ++    K  G P P + W  NG+   ++S     ++   
Sbjct: 8   FIQVPENMSIDEGRFCRMDF---KVSGLPAPDVSWYLNGR--TVQSDDLHKMIVSE 58

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 1  MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA 35
          +   V+ SD G Y C  +N  GE       L V A
Sbjct: 65 IFEVVRASDAGAYACVAKNRAGEATFT-VQLDVLA 98

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 83.2 bits (206), Expect = 2e-20
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 2/96 (2%)

Query: 33  VHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
                  + +P+   V     A F C  +G P+P+V W ++G  +       +       
Sbjct: 11  TTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVL--STSARHQVTTTKY 68

Query: 93  EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
           + T  I  VQ  D G +     +  G       L +
Sbjct: 69  KSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 62.8 bits (153), Expect = 6e-13
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 5/80 (6%)

Query: 125 FLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRI 184
                S + T    +   P + T+     A   C   G P P + W + G  L     R 
Sbjct: 3   HHHHHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLST-SARH 61

Query: 185 NVSSSG---SLQI-DVLRDD 200
            V+++    + +I  V   D
Sbjct: 62  QVTTTKYKSTFEISSVQASD 81

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
              +P+   V  GE+A   C    G+P PT+ W + GQ   L +S R  +    
Sbjct: 17  ILTKPRSMTVYEGESARFSC-DTDGEPVPTVTWLRKGQ--VLSTSARHQVTTTK 67

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH 34
           I+ V+ SDEG Y   V+N  G++E +   LT+ 
Sbjct: 74  ISSVQASDEGNYSVVVENSEGKQEAE-FTLTIQ 105

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 82.8 bits (205), Expect = 3e-20
 Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 32  TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
           +    P F+  P D  V    +    C   G P P + W  +G  V   P +A+  + V 
Sbjct: 5   SSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPV--RPDSAH-KMLVR 61

Query: 92  QEG--TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP 136
           + G  +L I+ V   DAG + C A + AG  +    L V + E  P 
Sbjct: 62  ENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPS 108

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 60.5 bits (147), Expect = 5e-12
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 129 TSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT-RINVS 187
           +      P  +Q  P + T+    +  + C+  G P P + W  +G  + P+   ++ V 
Sbjct: 3   SGSSGFRPHFLQA-PGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVR 61

Query: 188 SSG--SLQI-DVLRDD 200
            +G  SL I  V   D
Sbjct: 62  ENGVHSLIIEPVTSRD 77

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
           F   P D  V  G+   ++C    G P P L W+ +G+   +       +L   
Sbjct: 12  FLQAPGDLTVQEGKLCRMDC-KVSGLPTPDLSWQLDGK--PVRPDSAHKMLVRE 62

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 1/38 (2%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
           +I  V   D G Y C   N  G+       L V A  S
Sbjct: 69  IIEPVTSRDAGIYTCIATNRAGQNSFS-LELVVAAKES 105

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 83.9 bits (207), Expect = 8e-20
 Identities = 18/130 (13%), Positives = 39/130 (30%), Gaps = 21/130 (16%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
           +I  +K  D   Y C V++   E +       + A     +             +    +
Sbjct: 71  IIKNLKIEDSDTYICEVEDQKEEVQLLV--FGLTANSDTHLLQGQS-------LTLTLES 121

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
                PSV       +             +    TL +  ++ +D+G + C+ L      
Sbjct: 122 PPGSSPSVQCRSPRGKN------------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKV 169

Query: 121 TVRAFLQVTS 130
             +  + V +
Sbjct: 170 EFKIDIVVLA 179

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 79.3 bits (195), Expect = 4e-18
 Identities = 18/163 (11%), Positives = 38/163 (23%), Gaps = 37/163 (22%)

Query: 54  ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGH---------------LHVTQEGTLRI 98
               C A         W       ++    ++                 L       L I
Sbjct: 13  VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLII 72

Query: 99  QGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPC 158
           + ++ ED+  ++C              L V  +       +  G S           L  
Sbjct: 73  KNLKIEDSDTYICEVEDQKEEVQ----LLVFGLTANSDTHLLQGQS---------LTLTL 119

Query: 159 QAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
           ++     P ++               N+    +L +  +   D
Sbjct: 120 ESPPGSSPSVQCRSPRGK--------NIQGGKTLSVSQLELQD 154

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 51.1 bits (122), Expect = 5e-08
 Identities = 17/137 (12%), Positives = 35/137 (25%), Gaps = 42/137 (30%)

Query: 154 AFLPCQAVGSPPPHIRWYKNGNSL-----------------PPEDTRINV--SSSGSLQI 194
             L C A         W  +                        D+R ++    +  L I
Sbjct: 13  VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLII 72

Query: 195 -DVLRDDF-----RAE---------------PKDTRVASGETALLECGPPKGQPEPTLHW 233
            ++  +D        E                 DT +  G++  L          P++  
Sbjct: 73  KNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTL-ESPPGSSPSVQC 131

Query: 234 KKNGQFIDLESSKRVSI 250
           +       ++  K +S+
Sbjct: 132 RSPRGKN-IQGGKTLSV 147

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 42.3 bits (99), Expect = 5e-05
 Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 6/73 (8%)

Query: 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGAL 272
           G+T  L C     +     HWK + Q   L +       G    + R       S     
Sbjct: 10  GDTVELTCTAS-QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRAD-----SRRSLW 63

Query: 273 SDDQWKLIAKNIR 285
               + LI KN++
Sbjct: 64  DQGNFPLIIKNLK 76

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 86.4 bits (213), Expect = 9e-20
 Identities = 27/222 (12%), Positives = 59/222 (26%), Gaps = 31/222 (13%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH--APPSFVVRPQDQKVGLNGIASFQCV 59
           + +    + G Y+  VQ+       +  +  +        +  PQ   V           
Sbjct: 56  VADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHAT 115

Query: 60  AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
            + S   +     E         +      +     + IQ    +  G +       +  
Sbjct: 116 VKFSGGKTPADNYELHYSWSKGEDV-----IDTTQDITIQEFTADKNGVYTVKVWGESED 170

Query: 120 TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQ--------AVGSPPPHIR-- 169
           +   A  ++         + Q    ++T+ L +   L           + G P   I+  
Sbjct: 171 SAASASTKIMLA---TMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYN 227

Query: 170 WYKN----------GNSLPPEDTRINVSSSGSLQI-DVLRDD 200
           WY            G+ +       +++  G L       DD
Sbjct: 228 WYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDD 269

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 81.4 bits (200), Expect = 4e-18
 Identities = 29/156 (18%), Positives = 51/156 (32%), Gaps = 29/156 (18%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQ--------DQKVGLNGI 53
           I E      G Y   V     +     A   +      V +            ++ LN +
Sbjct: 149 IQEFTADKNGVYTVKVWGESEDSAAS-ASTKIMLATMNVDQDVVESKTVALGNEISLNYV 207

Query: 54  ASFQCVAEGSPLPSV------FWTQEGSQVLMFPGNAYGH----LHVTQEGTLRIQGVQK 103
            S   V + S +P++      +  +EG       G+  G       +T +G L  +    
Sbjct: 208 VSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATY 267

Query: 104 EDAGFFVCSA----------LSVAGSTTVRAFLQVT 129
           +D   F C A          + VA ST+ +  ++V 
Sbjct: 268 DDTAKFWCVAKLYQQIEDETVEVAASTSRKCSMEVV 303

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 68.3 bits (166), Expect = 2e-13
 Identities = 37/259 (14%), Positives = 74/259 (28%), Gaps = 59/259 (22%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGS-PLPSVF---WTQEGSQVLMFPGNAYGHLHVT 91
             +  ++   +        +      G  PLPS     WT++                  
Sbjct: 2   AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH------------EN 49

Query: 92  QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLH 151
              TL +     E+AG +  +       T+V +  +V  +E+    +    P +  +   
Sbjct: 50  NTATLTVADATSENAGSYKVTVQDTDTMTSVES--EVFLMEEAELIVNITEPQHFYVSSQ 107

Query: 152 SVAFLPC---QAVGSPPP-----HIRWYKNGNSLP-----------PEDTRI-------- 184
           +   L      + G  P      H  W K  + +             +   +        
Sbjct: 108 TDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGE 167

Query: 185 --NVSSSGSLQIDVL-RDDFRAEPKDTRVASGETALLEC-------GPPKGQPEPTLHW- 233
             + ++S S +I +   +  +   +   VA G    L         G   G P  T+ + 
Sbjct: 168 SEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYN 227

Query: 234 ---KKNGQFIDLESSKRVS 249
              ++ GQ         V 
Sbjct: 228 WYLQREGQLSPTLIGSEVG 246

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 80.9 bits (200), Expect = 2e-19
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 4/104 (3%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
             P F ++ +  K+      +F C   G+P P ++W ++G Q+   P + +  +    +G
Sbjct: 7   GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQIS--PKSDHYTIQRDLDG 64

Query: 95  --TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP 136
             +L       +D G +   A +  G  +    L V +V   P 
Sbjct: 65  TCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGPS 108

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 57.0 bits (138), Expect = 8e-11
 Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 6/77 (7%)

Query: 129 TSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSS 188
           +S     P        +  +         C+  G+P P I W+K+G  + P+     +  
Sbjct: 2   SSGSSGAPFFEM-KLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQR 60

Query: 189 SG----SLQI-DVLRDD 200
                 SL       DD
Sbjct: 61  DLDGTCSLHTTASTLDD 77

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
           F  + K  ++  G      C    G P+P ++W K+G+ I    S   +I  D 
Sbjct: 11  FEMKLKHYKIFEGMPVTFTC-RVAGNPKPKIYWFKDGKQIS-PKSDHYTIQRDL 62

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 10/37 (27%), Positives = 11/37 (29%), Gaps = 1/37 (2%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
            T     D+G Y     N  G        L V A  S
Sbjct: 70  TTASTLDDDGNYTIMAANPQGRISCT-GRLMVQAVNS 105

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 82.4 bits (203), Expect = 6e-19
 Identities = 33/150 (22%), Positives = 52/150 (34%), Gaps = 13/150 (8%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
            IT+VK  D G Y+C +    G  + K   + V+AP + + +       +       C A
Sbjct: 83  QITDVKLQDAGVYRCMISY--GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQA 140

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQG---VQKEDAGFFVCSALSVA 117
           EG P   V WT    QVL   G         +E    +     +       F C+   + 
Sbjct: 141 EGYPKAEVIWTSSDHQVL--SGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLD 198

Query: 118 GSTTVRAFLQVTSVEDTPPPIVQVGPSNQT 147
                 A L +        P+    P+ +T
Sbjct: 199 PEENHTAELVIPE-----LPLAHP-PNERT 222

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 68.1 bits (166), Expect = 9e-14
 Identities = 33/179 (18%), Positives = 54/179 (30%), Gaps = 33/179 (18%)

Query: 30  LLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPS-----VFWTQEGSQVLMFPGNA 84
           + TV  P    V      V      + +C              V+W  E   ++ F    
Sbjct: 1   MFTVTVPKDLYV------VEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGE 54

Query: 85  YGHLHVTQE----------------GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
                                      L+I  V+ +DAG + C   S  G+   R  ++V
Sbjct: 55  EDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMI-SYGGADYKRITVKV 113

Query: 129 TSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVS 187
            +  +     + V       P+ S   L CQA G P   + W  + + +    T    S
Sbjct: 114 NAPYNKINQRILV-----VDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNS 167

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 78.1 bits (193), Expect = 1e-18
 Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 8/105 (7%)

Query: 31  LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV 90
            T+   P   +R +  +V       F    +  P   V W   G ++          +H 
Sbjct: 3   FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVEL-----QESSKIHY 57

Query: 91  TQEG---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVE 132
           T      TL I     +D+G +     +  G  +  A L VT  +
Sbjct: 58  TNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGGD 102

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 54.6 bits (132), Expect = 5e-10
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG---SL 192
            P + +   +  +P              P   ++WY NG  L  E ++I+ +++    +L
Sbjct: 8   APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVEL-QESSKIHYTNTSGVLTL 66

Query: 193 QI-DVLRDD 200
           +I D   DD
Sbjct: 67  EILDCHTDD 75

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 43.4 bits (103), Expect = 5e-06
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 3/53 (5%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
                +  RV  G+         + +P   + W  NG   +L+ S ++     
Sbjct: 11  ITLRMRSHRVPCGQNTRFIL-NVQSKPTAEVKWYHNGV--ELQESSKIHYTNT 60

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 1/35 (2%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAP 36
           I +    D G Y+    N  GE     A L V   
Sbjct: 68  ILDCHTDDSGTYRAVCTNYKGEASDY-ATLDVTGG 101

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 76.2 bits (188), Expect = 7e-18
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 9/99 (9%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG- 94
            P    R Q Q VG    A F+    G P P   W + G ++          ++      
Sbjct: 5   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKI-----ERSDRIYWYWPED 59

Query: 95  ---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS 130
               L I+ V  ED+   +  A+++AG T+  AFL V +
Sbjct: 60  NVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 53.8 bits (130), Expect = 1e-09
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP-EDTRINVSSSG--SL 192
            P +     +QT+   S A    + VG P P   WYKNG  +   +             L
Sbjct: 5   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 64

Query: 193 QI-DVLRDD 200
            I DV  +D
Sbjct: 65  VIRDVTGED 73

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
                +   V  G  A        G+P+P   W KNG    +E S R+      
Sbjct: 8   IFERIQSQTVGQGSDAHFRV-RVVGKPDPECEWYKNGV--KIERSDRIYWYWPE 58

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)

Query: 2  ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA 35
          I +V   D         N+ GE  +  A L V A
Sbjct: 66 IRDVTGEDSASIMVKAINIAGETSSH-AFLLVQA 98

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 76.5 bits (188), Expect = 1e-17
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 7/118 (5%)

Query: 26  TKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNA 84
                LTV+ PP      Q Q          +C    +P P  + W+ + + +       
Sbjct: 4   GSSGTLTVNGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGR 62

Query: 85  YGHLHVTQEG----TLRIQGVQKED-AGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
           Y    ++ E     TL I  + + D    + C+A +  GS T    L+    E + P 
Sbjct: 63  YTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPS 120

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 16/97 (16%)

Query: 118 GSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP-HIRWYKNGNS 176
           GS+     L V       PPI+      Q         + C    +PPP  I W    N 
Sbjct: 1   GSSGSSGTLTVNG-----PPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENV 54

Query: 177 LPPEDT-RINVSSS-------GSLQI-DVLRDDFRAE 204
           L    + R  V +         +L I +++R DF+  
Sbjct: 55  LESGTSGRYTVETISTEEGVISTLTISNIVRADFQTI 91

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 2/76 (2%)

Query: 187 SSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFIDLESS 245
           SS  S  + V      +  +      GE   ++C   +  P P  + W      ++  +S
Sbjct: 2   SSGSSGTLTVNGPPIISSTQTQHALHGEKGQIKC-FIRSTPPPDRIAWSWKENVLESGTS 60

Query: 246 KRVSILGDPWFDSRRS 261
            R ++      +   S
Sbjct: 61  GRYTVETISTEEGVIS 76

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 79.5 bits (195), Expect = 1e-17
 Identities = 30/172 (17%), Positives = 57/172 (33%), Gaps = 33/172 (19%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
           ++ +V+K+DEG Y C ++        K   + +   P     P+D +V +      +C  
Sbjct: 87  LLQDVQKADEGIYTCEIRLKNESMVMK-KPVELWVLPEE---PRDLRVRVGDTTQMRCSI 142

Query: 61  EGSPLP---SVFWT------QEGSQVLMFPGNAYGHLHVTQE----------------GT 95
           + +       V W        E   VL +  N       +                  G+
Sbjct: 143 QSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGS 202

Query: 96  LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQT 147
           +++Q V++ D G + CS       +     L V            + P+  T
Sbjct: 203 IKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ----DEFQRTISPTPPT 250

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 71.8 bits (175), Expect = 9e-15
 Identities = 34/193 (17%), Positives = 62/193 (32%), Gaps = 34/193 (17%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQCV---AEGSPLPSVFWTQEGSQ------VLMFPGNAY 85
             P   V     +V +       CV    E   +  V W     +      VL +  N  
Sbjct: 4   GLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLS 63

Query: 86  -------GHLHVTQE-----GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVED 133
                     H+  +     G+L +Q VQK D G + C       S  ++  +++  + +
Sbjct: 64  VPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPE 123

Query: 134 TPPPI-VQVGPSNQTLPLHSVAFLPCQAVGSPPPH---IRWYKNGNSLPPEDTRINVSSS 189
            P  + V+VG +           + C    +       + W  +  S   E+T ++  S+
Sbjct: 124 EPRDLRVRVGDT---------TQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSN 174

Query: 190 GSLQIDVLRDDFR 202
                      FR
Sbjct: 175 MRSGKFQSLGRFR 187

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 77.9 bits (192), Expect = 3e-17
 Identities = 21/137 (15%), Positives = 39/137 (28%), Gaps = 9/137 (6%)

Query: 11  GKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFW 70
             Y      +V               P     P           +  C     P  ++ W
Sbjct: 1   ATYAAASSALVPRGS-------HMYAPKLQG-PVAVYTWEGNQVNITCEVFAYPSATISW 52

Query: 71  TQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS 130
            ++G  +     +     +      L +    + D G + C+A++  G  ++   L    
Sbjct: 53  FRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQAD 112

Query: 131 VEDTPPPIVQVGPSNQT 147
                P I QV P + T
Sbjct: 113 TPS-SPSIDQVEPYSST 128

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 64.8 bits (158), Expect = 1e-12
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 127 QVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED-TRIN 185
            V        P +Q GP        +   + C+    P   I W+++G  LP  + + I 
Sbjct: 10  LVPRGSHMYAPKLQ-GPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIK 68

Query: 186 VSSSGS---LQI-DVLRDDF 201
           + ++ S   L++     +DF
Sbjct: 69  IYNTPSASYLEVTPDSENDF 88

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 10/82 (12%)

Query: 204 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRS 263
            P       G    + C      P  T+ W ++GQ +   +   + I   P      S S
Sbjct: 24  GPVAVYTWEGNQVNITC-EVFAYPSATISWFRDGQLLPSSNYSNIKIYNTP------SAS 76

Query: 264 IFGSVLGALSDD--QWKLIAKN 283
               V     +D   +   A N
Sbjct: 77  YL-EVTPDSENDFGNYNCTAVN 97

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
            +T   ++D G Y C   N +G+   +  +L     PS
Sbjct: 79  EVTPDSENDFGNYNCTAVNRIGQESLE-FILVQADTPS 115

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 74.4 bits (183), Expect = 5e-17
 Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 15/121 (12%)

Query: 29  ALLTVHA-PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGH 87
           +   V       +   +D  V     A+F+C    +    V W  + + +         +
Sbjct: 5   SSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPL--HANE--LN 60

Query: 88  LHVTQEG---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPS 144
               Q G    L ++ +  +D+G         AG     A L    V + P    + GPS
Sbjct: 61  EIDAQPGGYHVLTLRQLALKDSGTIYF----EAGDQRASAAL---RVTEKPSVFSRSGPS 113

Query: 145 N 145
           +
Sbjct: 114 S 114

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 10/87 (11%)

Query: 118 GSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
           GS+          V+     I++    +  +   S A   C+   +    + W+ +   L
Sbjct: 1   GSSGSSGL-----VQGRRVHIIE-DLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPL 54

Query: 178 PP-EDTRINVSSSG--SLQI-DVLRDD 200
              E   I+    G   L +  +   D
Sbjct: 55  HANELNEIDAQPGGYHVLTLRQLALKD 81

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 187 SSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 246
           SS  S  +   R     + +D  V  G +A   C          +HW  +     L +++
Sbjct: 2   SSGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCR-ISPANYEPVHWFLDKT--PLHANE 58

Query: 247 RVSIL 251
              I 
Sbjct: 59  LNEID 63

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 5/43 (11%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQ 44
           + ++   D G          G++    A L V   PS   R  
Sbjct: 74  LRQLALKDSGTIYF----EAGDQRAS-AALRVTEKPSVFSRSG 111

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 76.2 bits (187), Expect = 7e-17
 Identities = 29/176 (16%), Positives = 48/176 (27%), Gaps = 24/176 (13%)

Query: 30  LLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSV-----FWTQEGSQVLMFPGNA 84
           L TV AP           V +    S +C  +      +        +  +   +    A
Sbjct: 2   LFTVTAPKEVYT------VDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERA 55

Query: 85  YGHLHVTQEG--TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVG 142
                    G     I  VQ  D+G + C  +  A        ++V +        +   
Sbjct: 56  TLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEV 115

Query: 143 PSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP-----EDTRINVSSSGSLQ 193
           P    +       L CQA G P   + W               +    V+S   L+
Sbjct: 116 PGTGEV------QLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLK 165

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 42.3 bits (99), Expect = 5e-05
 Identities = 18/147 (12%), Positives = 30/147 (20%), Gaps = 40/147 (27%)

Query: 139 VQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT-----RINVSSSG--- 190
           V       T+ + S   L C         +   +        DT     R  +       
Sbjct: 5   VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPL 64

Query: 191 ---SLQI-DVLRDD---------------------------FRAEPKDTRVASGETALLE 219
                 I  V   D                            R + +   V       L 
Sbjct: 65  GKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLT 124

Query: 220 CGPPKGQPEPTLHWKKNGQFIDLESSK 246
           C   +G P   + W+      +    +
Sbjct: 125 C-QARGYPLAEVSWQNVSVPANTSHIR 150

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 73.2 bits (180), Expect = 8e-17
 Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
           +  S  V  +   V    +   +C        S+ W ++G Q+            +T   
Sbjct: 2   SSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLA-----ESNRTRITG-E 54

Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSN 145
            + +Q     D+G + C   S +GS T    + V+   D  P     GPS+
Sbjct: 55  EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS---DALPS----GPSS 98

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 51.2 bits (123), Expect = 9e-09
 Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 4/66 (6%)

Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI- 194
                V   +  +    +  L C+        I W ++G  L     R  + +   +++ 
Sbjct: 3   SGSSGVEVESFLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLAE-SNRTRI-TGEEVEVQ 59

Query: 195 DVLRDD 200
           D +  D
Sbjct: 60  DSVPAD 65

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
              E +   V  G+   L C   +     +++W ++G    L  S R  I G+
Sbjct: 6   SGVEVESFLVHPGDLLQLRC-RLRDDV-QSINWLRDGV--QLAESNRTRITGE 54

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 73.5 bits (181), Expect = 1e-16
 Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 9/113 (7%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
           + P  +  P+DQKV             G+   +  W +   Q+         H+ V    
Sbjct: 6   SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQI-----QESEHMKVENSE 60

Query: 95  ---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPS 144
               L I   ++E  G +     +  GS   +  L V    D PP     GPS
Sbjct: 61  NGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPD-PPAGTPSGPS 112

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 6/73 (8%)

Query: 132 EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG- 190
             + P I+Q  P +Q +       L  +  G+ P    W K    +   +  + V +S  
Sbjct: 4   GSSGPQIIQ-FPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESE-HMKVENSEN 61

Query: 191 --SLQI-DVLRDD 200
              L I    ++ 
Sbjct: 62  GSKLTILAARQEH 74

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 48.9 bits (117), Expect = 8e-08
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
               P+D +V +GE+  L      G    T  W K  +   ++ S+ + +    
Sbjct: 10  IIQFPEDQKVRAGESVELFG-KVTGTQPITCTWMKFRK--QIQESEHMKVENSE 60

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
           I   ++   G Y   V+N +G R+ +   LTV   P 
Sbjct: 67  ILAARQEHCGCYTLLVENKLGSRQAQ-VNLTVVDKPD 102

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 75.6 bits (185), Expect = 2e-16
 Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 11/138 (7%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVR---PQDQKVGLNGIASFQC 58
           I     S  G   C  +      ++   ++ V     + V        ++ +       C
Sbjct: 68  IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNC 127

Query: 59  VAEGSPLPSVFWT--------QEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFV 110
            A       + +         Q    V        G        TL I GV + D G + 
Sbjct: 128 TARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYT 187

Query: 111 CSALSVAGSTTVRAFLQV 128
           C+A S   +     F++V
Sbjct: 188 CAASSGLMTKKNSTFVRV 205

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 54.0 bits (129), Expect = 7e-09
 Identities = 20/159 (12%), Positives = 32/159 (20%), Gaps = 8/159 (5%)

Query: 37  PSFVVRPQDQK--VGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
            S   +          N      C+       +V       +    P          +  
Sbjct: 8   ASVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKK-- 64

Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVA 154
              I       AG   C A     S     ++ V  V      +V        L +    
Sbjct: 65  GFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV-VGYRIYDVVLSPSHGIELSVGEKL 123

Query: 155 FLPCQAVGSP--PPHIRWYKNGNSLPPEDTRINVSSSGS 191
            L C A           W    +    +        + S
Sbjct: 124 VLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS 162

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP 37
            I  V +SD+G Y C   + +  ++     + VH  P
Sbjct: 174 TIDGVTRSDQGLYTCAASSGLMTKKNS-TFVRVHEDP 209

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 78.2 bits (193), Expect = 2e-16
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 2/103 (1%)

Query: 28  PALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGH 87
           P   T         + Q   V       F C A+G P P++ W     +  +    + G 
Sbjct: 377 PNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLS--PRKHLVSAKSNGR 434

Query: 88  LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS 130
           L V  +GTL ++  Q +D G ++C A +  G+ ++ A L V S
Sbjct: 435 LTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.4 bits (126), Expect = 7e-08
 Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYK-NGNSLPPE-DTRINVSSSGSL 192
              I         +         C+A G PPP I W     + +  + + R+ V   G+L
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTL 443

Query: 193 QI-DVLRDD 200
           ++      D
Sbjct: 444 EVRYAQVQD 452

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA 35
            +   +  D G Y C   N  G  ++ PA L V +
Sbjct: 444 EVRYAQVQDNGTYLCIAANAGGN-DSMPAHLHVRS 477

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 204 EPKDTRVASGETALLECGPPKGQPEPTLHWKK-NGQFIDLESSKRVSILGD 253
           + +   V  G T    C    G P P + W       +  +S+ R+++  D
Sbjct: 391 KAQQVFVDEGHTVQFVC-RADGDPPPAILWLSPRKHLVSAKSNGRLTVFPD 440

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 71.8 bits (176), Expect = 3e-16
 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 9/101 (8%)

Query: 30  LLTVHAPPSFVVR-PQDQKVGLNGIASFQCVAE-GSPLPSVFWTQEGSQVLMFPGNAYGH 87
           L     P    V   + Q V      +F C A+  SP  ++ WT+  +  L  P      
Sbjct: 3   LAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL--PSR---- 56

Query: 88  LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
             +   G L I+ VQ  DAG +VC+  ++       A L V
Sbjct: 57  -AMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 56.4 bits (136), Expect = 1e-10
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 5/73 (6%)

Query: 130 SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPPEDTRINVSS 188
           +    P  +      +Q++   +     C A   SP   + W +  N   P         
Sbjct: 4   AAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD---F 60

Query: 189 SGSLQI-DVLRDD 200
           +G L I +V   D
Sbjct: 61  NGILTIRNVQPSD 73

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 8/37 (21%), Positives = 10/37 (27%)

Query: 204 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 240
           E +   V  G      C      P  TL W +     
Sbjct: 16  EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGK 52

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 2  ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH 34
          I  V+ SD G Y C   NM    +   A L V 
Sbjct: 66 IRNVQPSDAGTYVCTGSNMFAMDQGT-ATLHVQ 97

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 71.4 bits (175), Expect = 4e-16
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 7/102 (6%)

Query: 28  PALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGH 87
           P L     P    V  +   V    +   +C        S+ W ++G Q++         
Sbjct: 1   PTLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLV-----ESNR 54

Query: 88  LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
             +T    + ++     D+G + C   S +GS T    + V+
Sbjct: 55  TRITG-EEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNVS 95

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 56.0 bits (135), Expect = 2e-10
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 4/73 (5%)

Query: 129 TSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSS 188
           T  E   P  V V   +  +    +  L C+        I W ++G  L     R  + +
Sbjct: 2   TLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVE-SNRTRI-T 58

Query: 189 SGSLQI-DVLRDD 200
              +++ D +  D
Sbjct: 59  GEEVEVRDSIPAD 71

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 43.2 bits (102), Expect = 5e-06
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
              E +   V  G+   L C         +++W ++G    L  S R  I G+
Sbjct: 12  VPVEVESLLVHPGDLLQLRC--RLRDDVQSINWLRDGV--QLVESNRTRITGE 60

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.3 bits (188), Expect = 6e-16
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 3/102 (2%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
            P  +  P+D  +    +A  +C     P+ SV W      VL    + +  + V  +GT
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLS-HASRHPRISVLNDGT 408

Query: 96  LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
           L    V   D G + C   +VAG++   A+L V++       
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHHH 450

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 123 RAFLQVTSVEDT-PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLP--- 178
           R  ++V         P +   P +  +    +A L C+    P   ++W     ++    
Sbjct: 338 RYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHA 395

Query: 179 PEDTRINVSSSGSLQI-DVLRDD 200
               RI+V + G+L    VL  D
Sbjct: 396 SRHPRISVLNDGTLNFSHVLLSD 418

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
             + V  SD G Y C V N+ G      A L V    +
Sbjct: 410 NFSHVLLSDTGVYTCMVTNVAGNS-NASAYLNVSTAGT 446

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 70.4 bits (173), Expect = 8e-16
 Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 8/96 (8%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG- 94
            P  +   +  K+      + +    G+P P+  WT   S            L V  +  
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGA-----ALAPELLVDAKSS 56

Query: 95  --TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
             ++     ++ D+G +     +  G       + V
Sbjct: 57  TTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 10/69 (14%), Positives = 18/69 (26%), Gaps = 5/69 (7%)

Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG---SL 192
            P +        +       L    +G+P P   W    +        + V +     S+
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGA-ALAPELLVDAKSSTTSI 60

Query: 193 QI-DVLRDD 200
                 R D
Sbjct: 61  FFPSAKRAD 69

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 49.2 bits (118), Expect = 4e-08
 Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 3/54 (5%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
                +  ++ +G T  LE     G P+PT  W           +  + +    
Sbjct: 5   ILTASRKIKIKAGFTHNLEV-DFIGAPDPTATWTVGDS--GAALAPELLVDAKS 55

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 2  ITEVKKSDEGKYQCYVQNMVGERETKPALLTV 33
              K++D G Y+  V+N +GE E     + V
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAI-FEVIV 92

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 70.4 bits (173), Expect = 1e-15
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 13/104 (12%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
            P  F    +D +V   G A+ +CV      P V W    + +   PG+ Y    + QEG
Sbjct: 7   GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVL--RPGDKY---SLRQEG 60

Query: 95  ---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTP 135
               L ++ ++ +D+G + C      G  T  A L VT++   P
Sbjct: 61  AMLELVVRNLRPQDSGRYSC----SFGDQTTSATLTVTALPSGP 100

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 6/75 (8%)

Query: 130 SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS 189
           S   + P   Q    +  +     A L C       P ++W    N L P D + ++   
Sbjct: 2   SSGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGD-KYSLRQE 59

Query: 190 G---SLQI-DVLRDD 200
           G    L + ++   D
Sbjct: 60  GAMLELVVRNLRPQD 74

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 10/57 (17%)

Query: 200 DFRAEPKDTRVASGETALLEC---GPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
            F+   KD  V  G  A L C             + W        L    + S+  +
Sbjct: 10  RFQEALKDLEVLEGGAATLRCVLSSVA-----APVKWCYGNN--VLRPGDKYSLRQE 59

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 5/37 (13%)

Query: 2  ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
          +  ++  D G+Y C      G++ T  A LTV A PS
Sbjct: 67 VRNLRPQDSGRYSC----SFGDQTTS-ATLTVTALPS 98

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 72.2 bits (177), Expect = 1e-15
 Identities = 25/131 (19%), Positives = 43/131 (32%), Gaps = 19/131 (14%)

Query: 134 TPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH-IRWYKNGNSLPPEDTRINVSS---- 188
            P  ++++ P    +       L CQ   SP    I+W+ NGN +P              
Sbjct: 2   PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNN 61

Query: 189 --------------SGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWK 234
                         S  + + VL +    +        GET +L C   K +P   + + 
Sbjct: 62  DSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFF 121

Query: 235 KNGQFIDLESS 245
           +NG+       
Sbjct: 122 QNGKSQKFSHL 132

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 69.8 bits (171), Expect = 8e-15
 Identities = 29/164 (17%), Positives = 48/164 (29%), Gaps = 30/164 (18%)

Query: 35  APPSFVVR--PQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVT 91
           APP  V++  P    V      +  C    SP   S+ W   G+ +             T
Sbjct: 1   APPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIP------------T 48

Query: 92  QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLH 151
                        D+G + C     + S  V   L V         +V   P  +     
Sbjct: 49  HTQPSYRFKANNNDSGEYTCQTGQTSLSDPVH--LTVLF-----EWLVLQTPHLEFQEGE 101

Query: 152 SVAFLPCQAVGSPPPH-IRWYKNGNSLPPEDTRINVSSSGSLQI 194
           ++  L C +    P   + +++NG S              +  I
Sbjct: 102 TI-MLRCHSWKDKPLVKVTFFQNGKSQKF------SHLDPTFSI 138

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 66.0 bits (161), Expect = 2e-13
 Identities = 20/129 (15%), Positives = 36/129 (27%), Gaps = 16/129 (12%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
             +   +D G+Y C          + P  LTV      +  P  +          +C + 
Sbjct: 55  RFKANNNDSGEYTCQTGQTSL---SDPVHLTVLFEWLVLQTPHLE-FQEGETIMLRCHSW 110

Query: 62  GS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
              PL  V + Q G        +           T  I       +G + C+        
Sbjct: 111 KDKPLVKVTFFQNGKSQKFSHLD----------PTFSIPQANHSHSGDYHCTGNIGYTLF 160

Query: 121 TVRAF-LQV 128
           + +   + V
Sbjct: 161 SSKPVTITV 169

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 70.2 bits (172), Expect = 2e-15
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 14/119 (11%)

Query: 31  LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV 90
           LTV+ PP  V   ++ ++ L      + V  G+P P++ W   G  +     +   H+  
Sbjct: 3   LTVYYPPRVV-SLEEPELRLE--HCIEFVVRGNPPPTLHWLHNGQPL---RESKIIHVEY 56

Query: 91  TQE-----GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPS 144
            QE     G L        + G +   A +  G+               P P+ +V P+
Sbjct: 57  YQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH---FLKEPFPVDEVSPT 112

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 13/74 (17%)

Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVS------- 187
           PP +V +      L       +     G+PPP + W  NG  L  E   I+V        
Sbjct: 8   PPRVVSLEEPELRLEHC----IEFVVRGNPPPTLHWLHNGQPL-RESKIIHVEYYQEGEI 62

Query: 188 SSGSLQI-DVLRDD 200
           S G L        +
Sbjct: 63  SEGCLLFNKPTHYN 76

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 1/40 (2%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFV 40
           +  +    + G Y    +N +G    +         P  V
Sbjct: 68  LFNKPTHYNNGNYTLIAKNPLGT-ANQTINGHFLKEPFPV 106

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 37.5 bits (87), Expect = 8e-04
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 9/83 (10%)

Query: 205 PKDTRVASGETAL---LECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRS 261
           P+   +   E  L   +E    +G P PTLHW  NGQ   L  SK + +      +    
Sbjct: 9   PRVVSLEEPELRLEHCIEF-VVRGNPPPTLHWLHNGQ--PLRESKIIHVEYYQEGEISEG 65

Query: 262 RSIFGSVLGALSDD-QWKLIAKN 283
             +F        ++  + LIAKN
Sbjct: 66  CLLFNKP--THYNNGNYTLIAKN 86

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 69.3 bits (170), Expect = 2e-15
 Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 11/90 (12%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
           +     V P  QK+        QCVA GSP+P   W +               L    + 
Sbjct: 2   SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELP-----------LTHETKK 50

Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTVRA 124
              +  V  E  G + C   +   S   + 
Sbjct: 51  LYMVPYVDLEHQGTYWCHVYNDRDSQDSKK 80

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 59.3 bits (144), Expect = 9e-12
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRI 184
              + V P++Q L   S   L C AVGSP PH +W+KN   L  E  ++
Sbjct: 3   KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL 51

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 48.5 bits (116), Expect = 6e-08
 Identities = 8/39 (20%), Positives = 17/39 (43%)

Query: 1  MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSF 39
          M+  V    +G Y C+V N    +++K   + +    + 
Sbjct: 53 MVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 46.2 bits (110), Expect = 5e-07
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSI 250
              EP   ++  G T +L+C    G P P   W KN   +  E+ K   +
Sbjct: 6   ICVEPTSQKLMPGSTLVLQCVAV-GSPIPHYQWFKNELPLTHETKKLYMV 54

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 69.3 bits (170), Expect = 3e-15
 Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 16/107 (14%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQC-VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE 93
                  R +  +V      SF+C ++  S      WT  G  V      +      T++
Sbjct: 7   GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTV-----GSSSRFQATRQ 61

Query: 94  G---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
           G    L ++     DAG  V          T +A L    V +   P
Sbjct: 62  GRKYILVVREAAPSDAGEVVF----SVRGLTSKASL---IVRERSGP 101

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 52.8 bits (127), Expect = 3e-09
 Identities = 11/53 (20%), Positives = 14/53 (26%), Gaps = 2/53 (3%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
                K   V  GE+   EC            W   G+   + SS R      
Sbjct: 11  ITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGK--TVGSSSRFQATRQ 61

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 10/77 (12%), Positives = 19/77 (24%), Gaps = 7/77 (9%)

Query: 129 TSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQ-AVGSPPPHIRWYKNGNSLPPEDTRINVS 187
           +S       I +       +         C  +  S      W   G ++     R   +
Sbjct: 2   SSGSSGHVGITK-RLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSS-RFQAT 59

Query: 188 SSG---SLQI-DVLRDD 200
             G    L + +    D
Sbjct: 60  RQGRKYILVVREAAPSD 76

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 68.9 bits (169), Expect = 3e-15
 Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 13/104 (12%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
               F     + +V   G A F C     P  +V W +   ++        G    +QEG
Sbjct: 7   GANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLEL--RAS---GKHQPSQEG 60

Query: 95  ---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTP 135
               L I  ++K D+  + C      G    RA L V      P
Sbjct: 61  LTLRLTISALEKADSDTYTC----DIGQAQSRAQLLVQGRRSGP 100

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 6/75 (8%)

Query: 130 SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS 189
           S   +         +N  +     A   C+    P   + W K    L     +   S  
Sbjct: 2   SSGSSGANCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASG-KHQPSQE 59

Query: 190 G---SLQI-DVLRDD 200
           G    L I  + + D
Sbjct: 60  GLTLRLTISALEKAD 74

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
           F  E  + +V    TA+  C      P  T+ W+K     +L +S +     +
Sbjct: 11  FTEELTNLQVEEKGTAVFTC--KTEHPAATVTWRKGLL--ELRASGKHQPSQE 59

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 68.9 bits (169), Expect = 5e-15
 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 15/118 (12%)

Query: 22  GERETKPALLTVHA-PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMF 80
           G      A+LTV A P  F    ++++      A  +C  E S +  V W +    +   
Sbjct: 4   GSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRC--ELSKMAPVEWWKGHETL--- 58

Query: 81  PGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTP 135
                    + Q+G    L+I+G+  EDAG ++C    + G     A L V ++   P
Sbjct: 59  --RDGDRHSLRQDGARCELQIRGLVAEDAGEYLC----MCGKERTSAMLTVRAMPSGP 110

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 185 NVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES 244
           +  +S  L +  L   F    ++     G TA+L C   +      + W K  +   L  
Sbjct: 6   SGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRC---ELSKMAPVEWWKGHE--TLRD 60

Query: 245 SKRVSILGD 253
             R S+  D
Sbjct: 61  GDRHSLRQD 69

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 11/88 (12%)

Query: 117 AGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNS 176
             S    A L   +V   P    + G  N+     + A L C+   S    + W+K   +
Sbjct: 4   GSSGRTSAML---TVRALPIKFTE-GLRNEEATEGATAVLRCEL--SKMAPVEWWKGHET 57

Query: 177 LPPEDTRINVSSSG---SLQI-DVLRDD 200
           L   D R ++   G    LQI  ++ +D
Sbjct: 58  LRDGD-RHSLRQDGARCELQIRGLVAED 84

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 5/37 (13%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
           I  +   D G+Y C    M G+  T  A+LTV A PS
Sbjct: 77  IRGLVAEDAGEYLC----MCGKERTS-AMLTVRAMPS 108

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 70.3 bits (172), Expect = 6e-15
 Identities = 18/130 (13%), Positives = 38/130 (29%), Gaps = 19/130 (14%)

Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH-IRWYKNGNSLPPEDTRI--------- 184
             P V + P    +       L C           +W+ NG+     ++ +         
Sbjct: 3   QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKFED 62

Query: 185 ---------NVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKK 235
                     V+ S  + ++V  D    +     V  G+   L C   +      + + K
Sbjct: 63  SGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYK 122

Query: 236 NGQFIDLESS 245
           +G+ +     
Sbjct: 123 DGEALKYWYE 132

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 65.7 bits (160), Expect = 3e-13
 Identities = 27/165 (16%), Positives = 47/165 (28%), Gaps = 30/165 (18%)

Query: 33  VHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVT 91
           V   P   + P   ++      +  C         S  W   G             L   
Sbjct: 1   VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNG------------SLSEE 48

Query: 92  QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP-IVQVGPSNQTLPL 150
              +L I   + ED+G + C    V  S  V   +    +       +V  G        
Sbjct: 49  TNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQP------ 102

Query: 151 HSVAFLPCQAVGSPPPH-IRWYKNGNSLPPEDTRINVSSSGSLQI 194
               FL C    +   + + +YK+G +L           + ++ I
Sbjct: 103 ---LFLRCHGWRNWDVYKVIYYKDGEALKY------WYENHNISI 138

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 62.6 bits (152), Expect = 4e-12
 Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 15/121 (12%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
           I   K  D G+Y+C  Q +     ++P  L V +    +++   + V        +C   
Sbjct: 55  IVNAKFEDSGEYKCQHQQVNE---SEPVYLEVFSDW-LLLQASAEVVMEGQPLFLRCHGW 110

Query: 62  -GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
               +  V + ++G  +  +  N            + I     ED+G + C+        
Sbjct: 111 RNWDVYKVIYYKDGEALKYWYEN----------HNISITNATVEDSGTYYCTGKVWQLDY 160

Query: 121 T 121
            
Sbjct: 161 E 161

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP 37
           IT     D G Y C  +    + E++P  +TV   P
Sbjct: 138 ITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 67.9 bits (166), Expect = 8e-15
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 35  APPSFV----VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV 90
             P +     +  +   V       F+C A G+P+P++ W + G +         G+   
Sbjct: 3   RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNG-KEFKQEHRIGGYKVR 61

Query: 91  TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
            Q  +L ++ V   D G + C   +  GS      L V
Sbjct: 62  NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 58.2 bits (141), Expect = 2e-11
 Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 7/74 (9%)

Query: 134 TPPPIVQ---VGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS- 189
             P       +      +P  +     C A G+P P +RW KNG     E          
Sbjct: 3   RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62

Query: 190 --GSLQI-DVLRDD 200
              SL +  V+  D
Sbjct: 63  QHWSLIMESVVPSD 76

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 202 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSI 250
           + E +   V +  T    C P  G P PT+ W KNG+  + +   R+  
Sbjct: 12  KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGG 57

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 1  MITEVKKSDEGKYQCYVQNMVGERETKPALLTV 33
          ++  V  SD+G Y C V+N  G        L V
Sbjct: 68 IMESVVPSDKGNYTCVVENEYGSINHT-YHLDV 99

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 70.6 bits (172), Expect = 9e-15
 Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 15/171 (8%)

Query: 41  VRPQDQKVGLNGI-ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQ 99
             P+ + +   G   S  C   G   P   W  +    L          +     TL + 
Sbjct: 5   TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL-----NGKVTNEGTTSTLTMN 59

Query: 100 GVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQ 159
            V   +   ++C+A   +        +++ S     P   ++   +  L       + C 
Sbjct: 60  PVSFGNEHSYLCTATCESRKLEKGIQVEIYS----FPKDPEI-HLSGPLEAGKPITVKCS 114

Query: 160 AVGSPP---PHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEPKD 207
                P     I   K  + +  +   +  +   SL+   L   F    +D
Sbjct: 115 VADVYPFDRLEIDLLKGDHLMKSQ-EFLEDADRKSLETKSLEVTFTPVIED 164

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 60.6 bits (146), Expect = 3e-11
 Identities = 19/149 (12%), Positives = 40/149 (26%), Gaps = 10/149 (6%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
           +  V   +E  Y C       + E K   + +++ P          +      + +C   
Sbjct: 58  MNPVSFGNEHSYLCTATCESRKLE-KGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVA 116

Query: 62  GS---PLPSVFWTQEGSQVL--MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 116
                    +   +    +    F  +A      T+   +    V ++     VC A   
Sbjct: 117 DVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLH 176

Query: 117 AGSTTVRAFLQVTSVEDTPPPIVQVGPSN 145
                    ++    E      V + P N
Sbjct: 177 IDEMDSVPTVRQAVKELQ----VYISPKN 201

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 50.2 bits (119), Expect = 1e-07
 Identities = 16/151 (10%), Positives = 35/151 (23%), Gaps = 42/151 (27%)

Query: 126 LQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRIN 185
            ++         + Q+G S           L C   G   P   W    +S P      N
Sbjct: 1   FKI-ETTPESRYLAQIGDS---------VSLTCSTTGCESPFFSWRTQIDS-PLNGKVTN 49

Query: 186 VSSSGSLQIDVLRDD-----------------------------FRAEPKDTRVASGETA 216
             ++ +L ++ +                                         + +G+  
Sbjct: 50  EGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPI 109

Query: 217 LLECGPPKGQPEP--TLHWKKNGQFIDLESS 245
            ++C      P     +   K    +  +  
Sbjct: 110 TVKCSVADVYPFDRLEIDLLKGDHLMKSQEF 140

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 67.8 bits (166), Expect = 1e-14
 Identities = 21/106 (19%), Positives = 35/106 (33%), Gaps = 11/106 (10%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
                +    D  V     A F+C        +  W + G +V   P      + ++  G
Sbjct: 7   GQLEVLQDIADLTVKAAEQAVFKCEVSDEK-VTGKWYKNGVEV--RPS---KRITISHVG 60

Query: 95  ---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
               L I  V+ ED G +       A S +  A L    ++ + P 
Sbjct: 61  RFHKLVIDDVRPEDEGDYTFVPDGYALSLS--AKLNFLEIKVSGPS 104

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG---S 191
              ++Q   ++ T+     A   C+ V       +WYKNG  + P   RI +S  G    
Sbjct: 8   QLEVLQ-DIADLTVKAAEQAVFKCE-VSDEKVTGKWYKNGVEVRP-SKRITISHVGRFHK 64

Query: 192 LQI-DVLRDD 200
           L I DV  +D
Sbjct: 65  LVIDDVRPED 74

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
              +  D  V + E A+ +C       + T  W KNG   ++  SKR++I   
Sbjct: 11  VLQDIADLTVKAAEQAVFKC--EVSDEKVTGKWYKNGV--EVRPSKRITISHV 59

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 71.7 bits (176), Expect = 2e-14
 Identities = 30/102 (29%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
            P  V  P D  V     A  +C A  S   SV W      V+   G     + V  +GT
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRASTSL-TSVSWITPNGTVMT-HGAYKVRIAVLSDGT 398

Query: 96  LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
           L    V  +D G + C   +  G+TT  A L VT    T   
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTG---THHH 437

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 123 RAFLQVTSVEDT-PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYK-NGNSLPP- 179
           R   ++     T   P++   P++  +     A L C+A  +    + W   NG  +   
Sbjct: 327 RYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHG 385

Query: 180 -EDTRINVSSSGSLQI-DVLRDD 200
               RI V S G+L   +V   D
Sbjct: 386 AYKVRIAVLSDGTLNFTNVTVQD 408

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 67.0 bits (163), Expect = 3e-14
 Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 9/101 (8%)

Query: 37  PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWT--------QEGSQVLMFPGNAYGHL 88
           P   V+P+ Q        SF C A  S    + +         Q+          A G  
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 89  HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT-VRAFLQV 128
            +     LR++ V+    G + C   +  GS+  V A L +
Sbjct: 71  LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 47.0 bits (111), Expect = 4e-07
 Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 2/63 (3%)

Query: 131 VEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP--HIRWYKNGNSLPPEDTRINVSS 188
            +D P P + V P  Q+    S     C A  S        W  +  +L   +       
Sbjct: 5   CDDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHL 64

Query: 189 SGS 191
              
Sbjct: 65  RAQ 67

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVH 34
            +  V+ + EG YQC + N  G   +  A LT++
Sbjct: 79  RLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 66.6 bits (163), Expect = 3e-14
 Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 17/109 (15%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
            P  F    + ++      A+ QC  E S +  V W +    +        G   + Q+G
Sbjct: 7   GPARFTQDLKTKEASEGATATLQC--ELSKVAPVEWKKGPETL-----RDGGRYSLKQDG 59

Query: 95  ---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQ 140
               L+I  +   DAG + C    + G     A L   +V   P    +
Sbjct: 60  TRCELQIHDLSVADAGEYSC----MCGQERTSATL---TVRALPARFTE 101

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 8/76 (10%)

Query: 129 TSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSS 188
           +S    P    Q     +     + A L C+   S    + W K   +L     R ++  
Sbjct: 2   SSGSSGPARFTQ-DLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRD-GGRYSLKQ 57

Query: 189 SG---SLQI-DVLRDD 200
            G    LQI D+   D
Sbjct: 58  DGTRCELQIHDLSVAD 73

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 5/54 (9%)

Query: 200 DFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
            F  + K    + G TA L+C   +      + WKK  +   L    R S+  D
Sbjct: 10  RFTQDLKTKEASEGATATLQC---ELSKVAPVEWKKGPE--TLRDGGRYSLKQD 58

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 5/42 (11%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRP 43
           I ++  +D G+Y C    M G+  T  A LTV A P+     
Sbjct: 66  IHDLSVADAGEYSC----MCGQERTS-ATLTVRALPARFTEG 102

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 65.8 bits (161), Expect = 4e-14
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 13/98 (13%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
              +F  +P+  +V     A F+   E      V W + GS +     +A     +  EG
Sbjct: 7   PVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDI-----SASNKYGLATEG 60

Query: 95  ---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
              TL ++ V   D G +      +AGS+ V+  L+V 
Sbjct: 61  TRHTLTVREVGPADQGSYAV----IAGSSKVKFDLKVI 94

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 134 TPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG--- 190
            P       P +  +   S A    +        +RW + G+ +   + +  +++ G   
Sbjct: 6   KPVSAFSKKPRSVEVAAGSPAVFEAE-TERAGVKVRWQRGGSDISASN-KYGLATEGTRH 63

Query: 191 SLQI-DVLRDD 200
           +L + +V   D
Sbjct: 64  TLTVREVGPAD 74

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 45.8 bits (109), Expect = 6e-07
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 200 DFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
            F  +P+   VA+G  A+ E      +    + W++ G   D+ +S +  +  +
Sbjct: 10  AFSKKPRSVEVAAGSPAVFEAET--ERAGVKVRWQRGGS--DISASNKYGLATE 59

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 65.8 bits (160), Expect = 1e-13
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 11/121 (9%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPL---PSVFWTQEGSQVLMFPGNAYGHLHVT 91
           +   F+ +PQ   V +    +F    +   L   P++ W +     L      +  L  T
Sbjct: 6   SGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKET 65

Query: 92  -------QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPS 144
                      ++I   +   AG + C         +    L+V     T P I   GPS
Sbjct: 66  FERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNI-DSGPS 124

Query: 145 N 145
           +
Sbjct: 125 S 125

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 41.9 bits (98), Expect = 3e-05
 Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 1/37 (2%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
           I + K +  G Y+C V             L VH    
Sbjct: 79  IIKAKDNFAGNYRCEVTYKDKFDSCS-FDLEVHESTG 114

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 64.8 bits (158), Expect = 1e-13
 Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 10/109 (9%)

Query: 33  VHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLM---FPGNAYGHLH 89
           VH  P+     +      +         +G+P P++ W   G+ +          +   H
Sbjct: 1   VHFAPTIT-FLESPTSDHH--WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57

Query: 90  VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPI 138
               G L++      + G +   A +  G    +            P I
Sbjct: 58  TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG----WPGI 102

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSS------ 188
            P I  +   + T   H    +P    G+P P ++W+ NG  L  E   I          
Sbjct: 4   APTITFL--ESPTSDHHWC--IPFTVKGNPKPALQWFYNGAIL-NESKYICTKIHVTNHT 58

Query: 189 --SGSLQI-DVLRDD 200
              G LQ+ +    +
Sbjct: 59  EYHGCLQLDNPTHMN 73

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 6/39 (15%), Positives = 11/39 (28%), Gaps = 1/39 (2%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSF 39
            +      + G Y    +N  G+ + K         P  
Sbjct: 65  QLDNPTHMNNGDYTLIAKNEYGK-DEKQISAHFMGWPGI 102

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 64.2 bits (157), Expect = 2e-13
 Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 13/105 (12%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
            P + +   +DQ V        +C    +  P V W ++   +       Y    V  EG
Sbjct: 7   GPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAI--RKSQKY---DVVCEG 60

Query: 95  ---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP 136
               L I+G   +DAG + C   +   +    A L V      P 
Sbjct: 61  TMAMLVIRGASLKDAGEYTCEVEASKST----ASLHVEEKASGPS 101

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 6/71 (8%)

Query: 134 TPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG--- 190
           + P  +     +Q +       L C+   +  P + W K+  ++     + +V   G   
Sbjct: 6   SGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQ-KYDVVCEGTMA 63

Query: 191 SLQI-DVLRDD 200
            L I      D
Sbjct: 64  MLVIRGASLKD 74

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 10/56 (17%)

Query: 201 FRAEPKDTRVASGETALLEC---GPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
                +D  VA GE   L C             +HW K+ +   +  S++  ++ +
Sbjct: 11  IIKPLEDQWVAPGEDVELRCELSRAG-----TPVHWLKDRK--AIRKSQKYDVVCE 59

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 64.4 bits (157), Expect = 2e-13
 Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 19/120 (15%)

Query: 31  LTVHAPPSFVVRP---QDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGH 87
            +     S++V P                 C     P   V WT++G +V      A   
Sbjct: 5   SSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEV--VESPAL-- 59

Query: 88  LHVTQEG---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPS 144
             + +E     L +  VQ ED+G ++C         +    +   +V + P  I+  GPS
Sbjct: 60  -LLQKEDTVRRLVLPAVQLEDSGEYLC----EIDDESASFTV---TVTEPPVRIIYSGPS 111

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 7/77 (9%)

Query: 129 TSVEDTPPPIVQV-GPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVS 187
           +S  D    IV   G             L C+ +  P   +RW K+G  +      + + 
Sbjct: 5   SSGTDVSSWIVYPSGKVYVAAVRLERVVLTCE-LCRPWAEVRWTKDGEEVVE-SPALLLQ 62

Query: 188 SSG---SLQI-DVLRDD 200
                  L +  V  +D
Sbjct: 63  KEDTVRRLVLPAVQLED 79

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 5/43 (11%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQ 44
           +  V+  D G+Y C     + +       +TV  PP  ++   
Sbjct: 72  LPAVQLEDSGEYLC----EIDDESAS-FTVTVTEPPVRIIYSG 109

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
           + +          E  +L C     +P   + W K+G+  ++  S  + +  +
Sbjct: 16  YPSGKVYVAAVRLERVVLTC--ELCRPWAEVRWTKDGE--EVVESPALLLQKE 64

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 63.5 bits (155), Expect = 3e-13
 Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 13/100 (13%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
           A           +V +   A F+      P     W  +G  +      A     + ++G
Sbjct: 4   ALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPL-----AASPDCEIIEDG 57

Query: 95  ---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSV 131
               L +   Q    G         A +T   A L+V  +
Sbjct: 58  KKHILILHNCQLGMTGEVSF----QAANTKSAANLKVKEL 93

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 4/53 (7%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
                    V  GETA  E      +P+    WK  GQ   L +S    I+ D
Sbjct: 8   VEKPLYGVEVFVGETAHFEIEL--SEPDVHGQWKLKGQ--PLAASPDCEIIED 56

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 8/70 (11%), Positives = 18/70 (25%), Gaps = 7/70 (10%)

Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG---S 191
              + +       + +   A    + +  P  H +W   G  L        +   G    
Sbjct: 5   LIEVEK-PLYGVEVFVGETAHFEIE-LSEPDVHGQWKLKGQPLAASP-DCEIIEDGKKHI 61

Query: 192 LQI-DVLRDD 200
           L + +     
Sbjct: 62  LILHNCQLGM 71

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 65.3 bits (159), Expect = 4e-13
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 15/121 (12%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA- 60
           I     +D G+Y+C          + P  L VH     +  P+            +C + 
Sbjct: 58  IDAATVNDSGEYRCQTNLSTL---SDPVQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSW 113

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
           + + L  V + Q G     F                 I     +D+G + C  L  + + 
Sbjct: 114 KNTALHKVTYLQNGKDRKYFH----------HNSDFHIPKATLKDSGSYFCRGLVGSKNV 163

Query: 121 T 121
           +
Sbjct: 164 S 164

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 65.3 bits (159), Expect = 4e-13
 Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 19/136 (13%)

Query: 131 VEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH-IRWYKNGNSLPPEDTRINVSS- 188
            ED P  +V + P   ++       L CQ   SP  +  +W+ N + +  + +   + + 
Sbjct: 2   TEDLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAA 61

Query: 189 -----------------SGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTL 231
                            S  +Q++V       +         +   L C   K      +
Sbjct: 62  TVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKV 121

Query: 232 HWKKNGQFIDLESSKR 247
            + +NG+         
Sbjct: 122 TYLQNGKDRKYFHHNS 137

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 61.0 bits (148), Expect = 1e-11
 Identities = 29/166 (17%), Positives = 49/166 (29%), Gaps = 29/166 (17%)

Query: 32  TVHAPPSFV-VRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLH 89
           T   P + V + PQ   V      + +C    SP   S  W    S +            
Sbjct: 2   TEDLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS----------- 50

Query: 90  VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLP 149
            +Q  +  I      D+G + C       S  V+  L+V         ++Q  P      
Sbjct: 51  -SQASSYFIDAATVNDSGEYRCQTNLSTLSDPVQ--LEVHI----GWLLLQA-PRWVFKE 102

Query: 150 LHSVAFLPCQAVGSPPPH-IRWYKNGNSLPPEDTRINVSSSGSLQI 194
              +  L C +  +   H + + +NG              +    I
Sbjct: 103 EDPIH-LRCHSWKNTALHKVTYLQNGKDRKY------FHHNSDFHI 141

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 63.1 bits (154), Expect = 5e-13
 Identities = 17/97 (17%), Positives = 28/97 (28%), Gaps = 9/97 (9%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
            P   V   +DQ+V +                 V W + G ++              ++G
Sbjct: 7   GPVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFK-ARYRFKKDG 64

Query: 95  ---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
               L    V +ED G +      +       A L V
Sbjct: 65  KRHILIFSDVVQEDRGRYQV----ITNGGQCEAELIV 97

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 9/79 (11%)

Query: 129 TSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED---TRIN 185
           +S    P  IV     +Q + +     +  + V      + W KNG  L  ED    R  
Sbjct: 2   SSGSSGPVLIVT-PLEDQQVFVGDRVEMAVE-VSEEGAQVMWMKNGVELTREDSFKARYR 59

Query: 186 VSSSG---SLQI-DVLRDD 200
               G    L   DV+++D
Sbjct: 60  FKKDGKRHILIFSDVVQED 78

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 4/55 (7%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI--DLESSKRVSILGD 253
                +D +V  G+   +       +    + W KNG  +  +     R     D
Sbjct: 11  IVTPLEDQQVFVGDRVEMAVEV--SEEGAQVMWMKNGVELTREDSFKARYRFKKD 63

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 65.8 bits (160), Expect = 5e-13
 Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 15/153 (9%)

Query: 54  ASFQCVAEGSPL----PSVFWTQEGSQVLMFPGNAY-------GHLHVTQEG--TLRIQG 100
           A+  C    S        ++W +E   VL                         ++ I  
Sbjct: 12  ATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILA 71

Query: 101 VQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA 160
           ++  D G + C  L        R  L   ++            S+  +P  ++  + C  
Sbjct: 72  LRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADF-PTPSISDFEIPTSNIRRIICST 130

Query: 161 VG-SPPPHIRWYKNGNSLPPEDTRINVSSSGSL 192
            G  P PH+ W +NG  L   +T ++      L
Sbjct: 131 SGGFPEPHLSWLENGEELNAINTTVSQDPETEL 163

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 10/119 (8%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH---APPSFVVRPQDQKVGLNGIASFQC 58
           I  ++ SDEG Y+C V     +   +  L  V              D ++  + I    C
Sbjct: 69  ILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIIC 128

Query: 59  VAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQG---VQKEDAGFFVCSA 113
              G  P P + W + G ++              +     +             F+C  
Sbjct: 129 STSGGFPEPHLSWLENGEEL---NAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLI 184

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 64.9 bits (158), Expect = 5e-13
 Identities = 22/134 (16%), Positives = 43/134 (32%), Gaps = 20/134 (14%)

Query: 59  VAEGSPLPSVFWTQEGSQVLMFPGNAY--------GHLHVTQEGTLRIQGVQKEDAGFFV 110
           V    PL  V W ++  +V     + +             T  G+L I  +   D   + 
Sbjct: 17  VPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYE 76

Query: 111 CSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRW 170
             + ++  +      L V  +E    P++    SN T        L C+ +      ++ 
Sbjct: 77  MESPNITDTMKFF--LYV--LEMVSKPMIYWECSNAT--------LTCEVLEGTDVELKL 124

Query: 171 YKNGNSLPPEDTRI 184
           Y+    L     + 
Sbjct: 125 YQGKEHLRSLRQKT 138

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 44.9 bits (106), Expect = 5e-06
 Identities = 18/112 (16%), Positives = 28/112 (25%), Gaps = 21/112 (18%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
           I  +  SDE +Y+    N+    +     L V    S   +P       N  A+  C   
Sbjct: 64  IYNLTSSDEDEYEMESPNITDTMKFF---LYVLEMVS---KPMIYWECSN--ATLTCEVL 115

Query: 62  GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
                 +   Q                H+       +          F C A
Sbjct: 116 EGTDVELKLYQGKE-------------HLRSLRQKTMSYQWTNLRAPFKCKA 154

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.8 bits (163), Expect = 8e-13
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 18/126 (14%)

Query: 42  RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGV 101
           +    +  L    + +C  +   +  V+ +    QVL     + G + V + G L  + V
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVL--SQGSNGSVSV-RNGDLFFKKV 308

Query: 102 QKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAV 161
           Q ED G + C A+    + T+   L+V                N TL  H          
Sbjct: 309 QVEDGGVYTCYAMGETFNETLSVELKV---------------YNFTLHGHHDTLNAAADP 353

Query: 162 GSPPPH 167
            S P  
Sbjct: 354 WSHPQF 359

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 1/38 (2%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
              +V+  D G Y CY        ET    L V+    
Sbjct: 304 FFKKVQVEDGGVYTCYAMGETFN-ETLSVELKVYNFTL 340

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 12/84 (14%)

Query: 123 RAFLQVTSVED----TPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLP 178
           +    + S++                  TL +       C         +    +   + 
Sbjct: 235 KKLHNIFSLDFFNCSEYKESAWEAHLGDTLTIR------CDTKQQGMTKVWVSPSNEQVL 288

Query: 179 PEDTRINVS-SSGSLQI-DVLRDD 200
            + +  +VS  +G L    V  +D
Sbjct: 289 SQGSNGSVSVRNGDLFFKKVQVED 312

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 64.9 bits (158), Expect = 8e-13
 Identities = 29/153 (18%), Positives = 48/153 (31%), Gaps = 22/153 (14%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
           I      D G+Y+C  Q       + P  L VH     +  P+            +C + 
Sbjct: 58  IDAATVDDSGEYRCQTQLSTL---SDPVQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSW 113

Query: 62  -GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
             + L  V + Q G     F  N              I     +D+G + C  L  + + 
Sbjct: 114 KNTALHKVTYLQNGKGRKYFHHN----------SDFYIPKATLKDSGSYFCRGLVGSKNV 163

Query: 121 -------TVRAFLQVTSVEDTPPPIVQVGPSNQ 146
                  T+   L V+++    PP  Q     +
Sbjct: 164 SSETVQITITQGLAVSTISSFFPPGYQGKKKKK 196

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 61.8 bits (150), Expect = 1e-11
 Identities = 20/136 (14%), Positives = 40/136 (29%), Gaps = 19/136 (13%)

Query: 131 VEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH-IRWYKNGNSLPPEDTRINVSS- 188
            ED P  +V + P    +       L CQ   SP     +W+ N + +  + +   + + 
Sbjct: 2   TEDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDAA 61

Query: 189 -----------------SGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTL 231
                            S  +Q++V       +         +   L C   K      +
Sbjct: 62  TVDDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKV 121

Query: 232 HWKKNGQFIDLESSKR 247
            + +NG+         
Sbjct: 122 TYLQNGKGRKYFHHNS 137

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 57.6 bits (139), Expect = 3e-10
 Identities = 25/160 (15%), Positives = 46/160 (28%), Gaps = 28/160 (17%)

Query: 37  PSFVVRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
               + PQ  +V      + +C    SP   S  W    S +             +Q  +
Sbjct: 8   AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLIS------------SQASS 55

Query: 96  LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAF 155
             I     +D+G + C       S  V+  L+V         ++   P         +  
Sbjct: 56  YFIDAATVDDSGEYRCQTQLSTLSDPVQ--LEVHI-----GWLLLQAPRWVFKEEDPI-H 107

Query: 156 LPCQAVGSPPPH-IRWYKNGNSLPPEDTRINVSSSGSLQI 194
           L C +  +   H + + +NG              +    I
Sbjct: 108 LRCHSWKNTALHKVTYLQNGKGRKY------FHHNSDFYI 141

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 13/106 (12%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
           +      + +D           +C        +V W + G +++  P + Y    +  EG
Sbjct: 6   SGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRY---RIRVEG 61

Query: 95  ---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
               L I+G  K DA  +      +       A L V     + P 
Sbjct: 62  KKHILIIEGATKADAAEYSV----MTTGGQSSAKLSVD--LKSGPS 101

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 7/76 (9%)

Query: 130 SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT-RINVSS 188
           S   +   + +    + T        L C+ V     +++W+KNG  + P    R  +  
Sbjct: 2   SSGSSGIMVTK-QLEDTTAYCGERVELECE-VSEDDANVKWFKNGEEIIPGPKSRYRIRV 59

Query: 189 SG---SLQI-DVLRDD 200
            G    L I    + D
Sbjct: 60  EGKKHILIIEGATKAD 75

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 46.2 bits (110), Expect = 6e-07
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
              + +DT    GE   LEC     + +  + W KNG+ I      R  I  +
Sbjct: 10  VTKQLEDTTAYCGERVELECEV--SEDDANVKWFKNGEEIIPGPKSRYRIRVE 60

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 64.4 bits (156), Expect = 2e-12
 Identities = 29/174 (16%), Positives = 50/174 (28%), Gaps = 22/174 (12%)

Query: 43  PQDQKVGLNGIASFQCVAEGSP-LPSVFWTQ---EGSQVLMFPGNAYGH----------- 87
           P   +V         C   G+     + W      G++  +      G            
Sbjct: 7   PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRG 66

Query: 88  ----LHVTQEGTLRIQGVQKEDAGFFVCSALSV-AGSTTVRAFLQVTSVEDTPPPIVQVG 142
                 +  +G L +   Q  D   +VC   +  AG+    A L V   +     +    
Sbjct: 67  RSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVF-AKPEATEVSPNK 125

Query: 143 PSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQID 195
            +   +   +     C +  G+P P I WY+NG  L             S  + 
Sbjct: 126 GTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVR 179

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 55.2 bits (132), Expect = 3e-09
 Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 16/128 (12%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVV----RPQDQKVGLNGIASFQ 57
           + E +  DE  Y C V+          A L V A P        +     +  +      
Sbjct: 81  LAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIAT 140

Query: 58  CVAE-GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG-----------TLRIQGVQKED 105
           C +  G+P P + W + G ++ +           ++             TL ++  + + 
Sbjct: 141 CNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDR 200

Query: 106 AGFFVCSA 113
              F C+A
Sbjct: 201 DASFHCAA 208

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 61.2 bits (149), Expect = 2e-12
 Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 12/99 (12%)

Query: 35  APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
           +    +    DQ V L      +C    +      WT+ G  V          L V Q+G
Sbjct: 6   SGLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPV-----QESDRLKVVQKG 58

Query: 95  ---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS 130
               L I     ED G +V +    A + T+ A + V S
Sbjct: 59  RIHKLVIANALTEDEGDYVFAP--DAYNVTLPAKVHVIS 95

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 48.5 bits (116), Expect = 7e-08
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 8/75 (10%)

Query: 130 SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS 189
           S   +   I+    ++QT+ L     L C+   + P   +W KNG  +   D R+ V   
Sbjct: 2   SSGSSGLKILT-PLTDQTVNLGKEICLKCEISENIPG--KWTKNGLPVQESD-RLKVVQK 57

Query: 190 G---SLQI-DVLRDD 200
           G    L I + L +D
Sbjct: 58  GRIHKLVIANALTED 72

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 5/53 (9%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
                 D  V  G+   L+C   +        W KNG    ++ S R+ ++  
Sbjct: 10  ILTPLTDQTVNLGKEICLKC---EISENIPGKWTKNGL--PVQESDRLKVVQK 57

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 59.6 bits (144), Expect = 1e-11
 Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 10/104 (9%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPL---PSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
              FV+RPQD +V + G  +F     G+ L   P V W +     L      +  LH + 
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 93  E-------GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
           +         L I   Q    G + C   +          L V 
Sbjct: 64  DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH 34
           IT+ + +  G Y+C V        +    LTVH
Sbjct: 76  ITDAQPAFTGSYRCEVSTKDKFDCSN-FNLTVH 107

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 17/111 (15%)

Query: 22  GERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFP 81
           G   +   ++     P+     ++ +      A+  C         V W ++G ++    
Sbjct: 1   GSSGSSGKVVFAKEQPA----HREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKL---- 51

Query: 82  GNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
            ++   + V   G    L +Q   + +AG + C     AG   +   LQV 
Sbjct: 52  -SSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSC----EAGGQQLSFRLQVA 97

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 45.9 bits (109), Expect = 7e-07
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
            +   ++ +  +G +A L C     Q +  + W K+G+   L SS +V +   
Sbjct: 14  EQPAHREVQAEAGASATLSC--EVAQAQTEVTWYKDGK--KLSSSSKVRVEAV 62

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 45.9 bits (109), Expect = 8e-07
 Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 7/77 (9%)

Query: 128 VTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVS 187
            +S +                   + A L C+ V      + WYK+G  L     ++ V 
Sbjct: 4   GSSGKVVFAKEQPA-HREVQAEAGASATLSCE-VAQAQTEVTWYKDGKKLSSSS-KVRVE 60

Query: 188 SSG---SLQI-DVLRDD 200
           + G    L +    + +
Sbjct: 61  AVGCTRRLVVQQAGQAE 77

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 61.2 bits (148), Expect = 1e-11
 Identities = 18/123 (14%), Positives = 36/123 (29%), Gaps = 4/123 (3%)

Query: 61  EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
           E S    V    +  ++ +        L+ TQ  +L++  ++ ED G +     +   + 
Sbjct: 37  ETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAK 96

Query: 121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPP 179
                  +  +       V          +     L C           RW   GN+L  
Sbjct: 97  LSS--YTLRILRQLRNIQVTNHSQLFQ-NMTCELHLTCSVEDADDNVSFRWEALGNTLSS 153

Query: 180 EDT 182
           +  
Sbjct: 154 QPN 156

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 50.4 bits (120), Expect = 1e-07
 Identities = 16/131 (12%), Positives = 35/131 (26%), Gaps = 18/131 (13%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQ---C 58
           ++ +K  D G Y+  +      + +   L  +    +  V    Q    N          
Sbjct: 74  LSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQ-NMTCELHLTCS 132

Query: 59  VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRI-QGVQKEDAGFFVCSALSVA 117
           V +     S  W   G+ +               +  L +    +      + C A +  
Sbjct: 133 VEDADDNVSFRWEALGNTLS-------------SQPNLTVSWDPRISSEQDYTCIAENAV 179

Query: 118 GSTTVRAFLQV 128
            + +     Q 
Sbjct: 180 SNLSFSVSAQK 190

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 41.9 bits (98), Expect = 6e-05
 Identities = 27/176 (15%), Positives = 40/176 (22%), Gaps = 64/176 (36%)

Query: 156 LPCQ-AVGSPPPHIRWYKNGNSL-----------------PPEDTRINVSSSGSLQI--- 194
           LP +   G     I W  N  SL                 P +  R+N + S SLQ+   
Sbjct: 18  LPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNL 77

Query: 195 -----------------------DVLRDDFRAEPK-----DTRVASGETALLECGPPKGQ 226
                                   +         +                L C      
Sbjct: 78  KMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDAD 137

Query: 227 PEPTLHWKKNGQFIDLESSKRVSILGDPWFD-------------SRRSRSIFGSVL 269
              +  W+  G    L S   +++  DP                S  S S+    L
Sbjct: 138 DNVSFRWEALGNT--LSSQPNLTVSWDPRISSEQDYTCIAENAVSNLSFSVSAQKL 191

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 9/99 (9%)

Query: 39  FVVRPQDQKVGLNGIASFQCVAEGSPLPS-VFWTQEGSQVLMFPGNAYGHLHVTQEG--- 94
              +         G   + C  E     + V W     Q+            +T E    
Sbjct: 4   VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQL-----ENSEKYEITYEDGVA 58

Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVED 133
            L ++ + K D G + C  ++  G  +  A L V  V +
Sbjct: 59  ILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVRE 97

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 8/69 (11%), Positives = 18/69 (26%), Gaps = 6/69 (8%)

Query: 137 PIVQVGPSNQTLPLHSVAFLPCQAVGSPPP-HIRWYKNGNSLPPEDTRINVSSSG---SL 192
            +V     +            C+         + WY     L     +  ++       L
Sbjct: 2   AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQL-ENSEKYEITYEDGVAIL 60

Query: 193 QI-DVLRDD 200
            + D+ + D
Sbjct: 61  YVKDITKLD 69

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 2  ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP 37
          + ++ K D+G Y+C V N  GE  +  A L V    
Sbjct: 62 VKDITKLDDGTYRCKVVNDYGEDSSY-AELFVKGVR 96

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 4/54 (7%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPT-LHWKKNGQFIDLESSKRVSILGD 253
              +        G      C   +   + T + W    +   LE+S++  I  +
Sbjct: 4   VSGQIMHAVGEEGGHVKYVC-KIENYDQSTQVTWYFGVR--QLENSEKYEITYE 54

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 58.5 bits (141), Expect = 4e-11
 Identities = 17/116 (14%), Positives = 31/116 (26%), Gaps = 11/116 (9%)

Query: 37  PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGH-------LH 89
            S     +   V      + +CV       S+ W       +                 H
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61

Query: 90  VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSN 145
              + ++ +  V  +D G + C   S    +T    + V     T        PS+
Sbjct: 62  SANQLSITVPNVTLQDEGVYKCLHYS-DSVSTKEVKVIVL---ATMKGEFCRYPSH 113

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 57.8 bits (140), Expect = 5e-11
 Identities = 18/108 (16%), Positives = 28/108 (25%), Gaps = 13/108 (12%)

Query: 26  TKPALLTVHAPPSFVVRPQD-QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNA 84
              + +      +F  + +   +V                   V W + G Q +   G+ 
Sbjct: 5   HHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNG-QEIQMSGSK 62

Query: 85  YGHLHVTQEG---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
           Y        G   TL I      D   + C    V G       L V 
Sbjct: 63  Y---IFESIGAKRTLTISQCSLADDAAYQC----VVGGEKCSTELFVK 103

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 54.3 bits (131), Expect = 8e-10
 Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 5/73 (6%)

Query: 132 EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG- 190
           E       +       +       L  + +      ++W KNG  +    ++    S G 
Sbjct: 12  EKKSTAFQKKLEPAYQVSKGHKIRLTVE-LADHDAEVKWLKNGQEIQMSGSKYIFESIGA 70

Query: 191 --SLQI-DVLRDD 200
             +L I      D
Sbjct: 71  KRTLTISQCSLAD 83

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 3/53 (5%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
            +      +V+ G    L         +  + W KNGQ I   S  +      
Sbjct: 19  QKKLEPAYQVSKGHKIRLTVEL--ADHDAEVKWLKNGQEIQ-MSGSKYIFESI 68

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 57.0 bits (138), Expect = 7e-11
 Identities = 19/107 (17%), Positives = 27/107 (25%), Gaps = 18/107 (16%)

Query: 35  APPSFVVRPQDQ-KVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE 93
           +  +F        +V   G   F       P   V W + G ++               +
Sbjct: 6   SGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEI-----RPSTKYIFEHK 59

Query: 94  G---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
           G    L I   Q  D   +       AG       L V S     P 
Sbjct: 60  GCQRILFINNCQMTDDSEYYV----TAGDEKCSTELFVRS----GPS 98

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 48.5 bits (116), Expect = 8e-08
 Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 6/75 (8%)

Query: 130 SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS 189
           S   +     ++      +          + +  P   ++WYKNG  + P  T+      
Sbjct: 2   SSGSSGAAFAKILDPAYQVDKGGRVRFVVE-LADPKLEVKWYKNGQEIRP-STKYIFEHK 59

Query: 190 G---SLQI-DVLRDD 200
           G    L I +    D
Sbjct: 60  GCQRILFINNCQMTD 74

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 4/49 (8%)

Query: 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
               +V  G             P+  + W KNGQ  ++  S +      
Sbjct: 15  DPAYQVDKGGRVRFVV--ELADPKLEVKWYKNGQ--EIRPSTKYIFEHK 59

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 60.3 bits (145), Expect = 1e-10
 Identities = 36/208 (17%), Positives = 62/208 (29%), Gaps = 25/208 (12%)

Query: 8   SDEGKYQCYVQNMVGERETKPALLTVHAPPSFV-VRPQDQKVGLNGIASFQCVAEGS-PL 65
            ++ +  CY       + T    LTV+  P  V + P      +    + +C  EG  P 
Sbjct: 58  QEDSQPMCYSNC-PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPR 116

Query: 66  P--SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA--------LS 115
              +V   +   ++          +    E T  +   +      F C          L 
Sbjct: 117 ANLTVVLLRGEKEL-----KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLE 171

Query: 116 VAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP---HIRWYK 172
           +  +T+    LQ        P       S + L + +   + C   G  P     +    
Sbjct: 172 LFENTSAPYQLQTFV----LPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLAL 227

Query: 173 NGNSLPPEDTRINVSSSGSLQIDVLRDD 200
               L P  T  N S S    + V  +D
Sbjct: 228 GDQRLNPTVTYGNDSFSAKASVSVTAED 255

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 53.7 bits (128), Expect = 2e-08
 Identities = 26/167 (15%), Positives = 46/167 (27%), Gaps = 17/167 (10%)

Query: 41  VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQG 100
           V P    +   G     C         +       +           L +        + 
Sbjct: 4   VSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKK---------ELLLPGNNRKVYEL 54

Query: 101 VQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA 160
              ++    +C +    G +T + FL V       P  V++ P     P+     L CQ 
Sbjct: 55  SNVQEDSQPMCYSNCPDGQSTAKTFLTVY----WTPERVELAPLPSWQPVGKNLTLRCQV 110

Query: 161 VGSPPPH---IRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAE 204
            G  P     +   +    L  E   +   +  +  + V RD   A 
Sbjct: 111 EGGAPRANLTVVLLRGEKELKRE-PAVGEPAEVTTTVLVRRDHHGAN 156

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 56.8 bits (137), Expect = 1e-10
 Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 8/104 (7%)

Query: 32  TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
            V          Q+  V   G A   C  + +   S+ W+    Q L F        +  
Sbjct: 2   KVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRI 61

Query: 92  Q-------EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
           +       E ++ +  V   D G + CS L      T +A+L V
Sbjct: 62  ELVRASWHELSISVSDVSLSDEGQYTCS-LFTMPVKTSKAYLTV 104

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 56.3 bits (135), Expect = 2e-10
 Identities = 20/113 (17%), Positives = 33/113 (29%), Gaps = 13/113 (11%)

Query: 43  PQDQKVGLNGIASFQCVAEGSPLPSVFWT--------QEGSQVLMFPGNAYGHLHVTQEG 94
               ++ +       C A       + +         Q    V        G        
Sbjct: 15  SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74

Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQT 147
           TL I GV + D G + C+A S   +     F++V        P V  G   ++
Sbjct: 75  TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE-----KPFVAFGSGMES 122

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 38.2 bits (88), Expect = 5e-04
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP 37
           I  V +SD+G Y C   + +  ++     + VH  P
Sbjct: 78  IDGVTRSDQGLYTCAASSGLMTKKNS-TFVRVHEKP 112

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 55.9 bits (135), Expect = 3e-10
 Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 9/106 (8%)

Query: 33  VHAPPSFVVRP---QDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLH 89
           +  PP   +     Q     +    +     +G P P V WT+ G+ +     +      
Sbjct: 18  IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPL---DTSRVHVRT 74

Query: 90  VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTP 135
              +    ++   + D+G +  S        T    ++V    +  
Sbjct: 75  SDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV---EKA 117

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 7/92 (7%)

Query: 113 ALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLH--SVAFLPCQAVGSPPPHIRW 170
           +   +G+      ++  +    PP I       QT          L     G P P + W
Sbjct: 2   SSGSSGTLAQPVTIREIAE---PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVW 58

Query: 171 YKNGNSLPPEDTRINVSSSGS-LQI-DVLRDD 200
            K G  L      +  S   +   +    R D
Sbjct: 59  TKGGAPLDTSRVHVRTSDFDTVFFVRQAARSD 90

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP 37
           + +  +SD G+Y+  VQ    + +T    + V    
Sbjct: 83  VRQAARSDSGEYELSVQIENMK-DTATIRIRVVEKA 117

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSI 250
            +      GE   L   P +G+P P + W K G  +D   + RV +
Sbjct: 31  RQTYIRKVGEQLNLVV-PFQGKPRPQVVWTKGGAPLD---TSRVHV 72

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 55.5 bits (134), Expect = 3e-10
 Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 18/109 (16%)

Query: 35  APPSFVVRPQ---DQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
           + P  ++ PQ         +      C           W ++G +V          L V 
Sbjct: 6   SGPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKV-----EESELLVVK 59

Query: 92  QEG---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
            +G    L +   + +D+G F C         +    + V   + + P 
Sbjct: 60  MDGRKHRLILPEAKVQDSGEFEC----RTEGVSAFFGVTVQ--DPSGPS 102

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 9/74 (12%)

Query: 134 TPPPIVQVGP---SNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG 190
           +  P+  + P    + T        L C+ +        WYK+G  +   +  + V   G
Sbjct: 5   SSGPVHILSPQDKVSLTFTTSERVVLTCE-LSRVDFPATWYKDGQKVEESE-LLVVKMDG 62

Query: 191 ---SLQI-DVLRDD 200
               L + +    D
Sbjct: 63  RKHRLILPEAKVQD 76

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 204 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
           +       + E  +L C     + +    W K+GQ   +E S+ + +  D
Sbjct: 16  DKVSLTFTTSERVVLTCEL--SRVDFPATWYKDGQ--KVEESELLVVKMD 61

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 57.6 bits (138), Expect = 3e-10
 Identities = 19/181 (10%), Positives = 43/181 (23%), Gaps = 43/181 (23%)

Query: 38  SFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLR 97
                 +D  V L       C    +   ++ W ++G  +     +         +    
Sbjct: 11  KVYDYQEDGSVLLT------C---DAEAKNITWFKDGKMIGFLTED---------KKKWN 52

Query: 98  IQGVQKEDAGFFVCSALSVAGSTT---------------------VRAFLQVTSVEDTPP 136
           +    K+  G + C                                +         D   
Sbjct: 53  LGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNE 112

Query: 137 PIVQVGPSNQTLPL-HSVAFLPCQAVGSPPPHIRWYKNGNSLPPE-DTRINVSSSGSLQI 194
            +  +  +   + +  +   L C     P   I W  N  ++  + D +   S    L +
Sbjct: 113 EMGGITQTPYKVSISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSL 170

Query: 195 D 195
            
Sbjct: 171 K 171

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 48.4 bits (114), Expect = 6e-07
 Identities = 20/155 (12%), Positives = 38/155 (24%), Gaps = 33/155 (21%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGER-----------ETKPALLTVHAPPSFVVR-------- 42
           +    K   G YQC       +            + K              +        
Sbjct: 53  LGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNE 112

Query: 43  ------PQDQKVGLNGI-ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
                     KV ++G      C     P   + W      +    G+       + E  
Sbjct: 113 EMGGITQTPYKVSISGTTVILTCPQY--PGSEILWQHNDKNI---GGDEDDKNIGSDEDH 167

Query: 96  LRIQGV-QKEDAGFFVCSALSVAGS-TTVRAFLQV 128
           L ++   + E +G++VC              +L+ 
Sbjct: 168 LSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 48.4 bits (114), Expect = 6e-07
 Identities = 21/154 (13%), Positives = 37/154 (24%), Gaps = 58/154 (37%)

Query: 151 HSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQID--------------- 195
            SV  L C    +   +I W+K+G  +          + GS   D               
Sbjct: 19  GSV-LLTC---DAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSK 74

Query: 196 -----------------------------------VLRDDFRAEPKDTRVA-SGETALLE 219
                                                 +         +V+ SG T +L 
Sbjct: 75  PLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILT 134

Query: 220 CGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
           C      P   + W+ N + I  +   +     +
Sbjct: 135 C---PQYPGSEILWQHNDKNIGGDEDDKNIGSDE 165

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 59.4 bits (143), Expect = 4e-10
 Identities = 26/145 (17%), Positives = 43/145 (29%), Gaps = 7/145 (4%)

Query: 4   EVKKSDEGKYQCYVQNMVGERETKPAL--LTVHAPPSF----VVRPQDQKVGLNGIASFQ 57
            +       YQ   + +    +   A+  + V   P       +R Q+ +V     A+FQ
Sbjct: 126 AISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQ 185

Query: 58  CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHL-HVTQEGTLRIQGVQKEDAGFFVCSALSV 116
           C A G  +       +G  V   P              +  +    K DAG + C   + 
Sbjct: 186 CSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTE 245

Query: 117 AGSTTVRAFLQVTSVEDTPPPIVQV 141
            G         V      P    Q+
Sbjct: 246 GGVGISNYAELVVKEPPVPIAPPQL 270

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 58.3 bits (140), Expect = 8e-10
 Identities = 18/132 (13%), Positives = 29/132 (21%), Gaps = 12/132 (9%)

Query: 52  GIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
           G+ +        PL +  W   G          +          L I             
Sbjct: 92  GLLNVYVKVNNGPLGNPIWNISGDP-----TRTW------NRAELAISTFWPNFYQVIFE 140

Query: 112 SALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWY 171
              S          ++V     T  P       N  +     A   C A+G      R +
Sbjct: 141 VITSGHQGYLAIDEVKVLGHPCTRTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLW 199

Query: 172 KNGNSLPPEDTR 183
             G  +     +
Sbjct: 200 LQGIDVRDAPLK 211

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 55.7 bits (134), Expect = 1e-09
 Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 12/100 (12%)

Query: 90  VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLP 149
               G LRI  V KED G +    L        +  ++V   E    P++    SN TL 
Sbjct: 65  DKTNGALRIYNVSKEDRGDYYMRMLH-ETEDQWKITMEVY--EMVSKPMIYWECSNATLT 121

Query: 150 LHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS 189
                   C+ +      ++ Y+    L     +  +S  
Sbjct: 122 --------CEVLEGTDVELKLYQGKEHL-RSLRQKTMSYQ 152

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 20/112 (17%), Positives = 32/112 (28%), Gaps = 20/112 (17%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
           I  V K D G Y   + +   ++      + V+   S   +P       N  A+  C   
Sbjct: 73  IYNVSKEDRGDYYMRMLHETEDQWK--ITMEVYEMVS---KPMIYWECSN--ATLTCEVL 125

Query: 62  GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
                 +   Q              HL   ++ T+  Q         F C A
Sbjct: 126 EGTDVELKLYQGKE-----------HLRSLRQKTMSYQWTN--LRAPFKCKA 164

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 34  HAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE 93
            A P F+V+P   +VG    A+F C    S  P V W ++  ++       Y   +   +
Sbjct: 480 EAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDREL--KQSVKYMKRYNGND 537

Query: 94  GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
             L I  V+ +D G +   A +  G+     FL VT
Sbjct: 538 YGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT 573

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 51.5 bits (123), Expect = 1e-08
 Identities = 19/121 (15%), Positives = 32/121 (26%), Gaps = 10/121 (8%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPG-----NAYGHLHV 90
            P+ V      ++            +G P PS+ W   GS +                  
Sbjct: 3   MPASVQLHTAVEMHH---WCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET 59

Query: 91  TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS--VEDTPPPIVQVGPSNQTL 148
            + G LR+      + G +   A +  G  +            E  P   +    S    
Sbjct: 60  VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTSGD 119

Query: 149 P 149
           P
Sbjct: 120 P 120

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 43.8 bits (103), Expect = 7e-06
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 13/70 (18%)

Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP---------EDTRIN 185
            P  VQ+      + +H    +P    G P P +RW  NG+ L           E     
Sbjct: 3   MPASVQLH---TAVEMHHWC-IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANE 58

Query: 186 VSSSGSLQID 195
               G L+++
Sbjct: 59  TVRHGCLRLN 68

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 52.4 bits (125), Expect = 3e-08
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 9/102 (8%)

Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVA 154
            LRI  V   D+G ++C      G    +A +++          V V             
Sbjct: 84  ALRIHNVTASDSGKYLCYFQD--GDFYEKALVELKVAALGSDLHVDVKGYK-----DGGI 136

Query: 155 FLPCQAVG-SPPPHIRWYKN-GNSLPPEDTRINVSSSGSLQI 194
            L C++ G  P P I+W  N G ++P  +  +     G   +
Sbjct: 137 HLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAV 178

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 52.0 bits (124), Expect = 3e-08
 Identities = 24/132 (18%), Positives = 42/132 (31%), Gaps = 10/132 (7%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
           I  V  SD GKY CY Q+     +   AL+ +           D K   +G    +C + 
Sbjct: 87  IHNVTASDSGKYLCYFQDGDFYEK---ALVELKVAALGSDLHVDVKGYKDGGIHLECRST 143

Query: 62  G-SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQG---VQKEDAGFFVCSALSVA 117
           G  P P + W+    + +         +     G   +     ++        C+  S  
Sbjct: 144 GWYPQPQIQWSNNKGENIP---TVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSL 200

Query: 118 GSTTVRAFLQVT 129
                 A + + 
Sbjct: 201 LGLEKTASISIA 212

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 50.5 bits (120), Expect = 1e-07
 Identities = 21/171 (12%), Positives = 45/171 (26%), Gaps = 20/171 (11%)

Query: 41  VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQG 100
           ++P+   V   G     C                 +     G         +    ++  
Sbjct: 7   LQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRG--------LRWLARQLVD 58

Query: 101 VQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA 160
           ++ E     VC       +   R  ++        P  V++ P     P+     L C+ 
Sbjct: 59  IR-EPETQPVCFFRCARRTLQARGLIRTFQ----RPDRVELMPLPPWQPVGENFTLSCRV 113

Query: 161 VGSPPPH---IRWYKNGNSLP----PEDTRINVSSSGSLQIDVLRDDFRAE 204
            G+ P     +   +    L       +      +  +  +   R+D  A 
Sbjct: 114 PGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGAN 164

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 44.7 bits (105), Expect = 9e-06
 Identities = 12/110 (10%), Positives = 30/110 (27%), Gaps = 5/110 (4%)

Query: 8   SDEGKYQCYVQNMVGERETKPALLTVHAPPSFV-VRPQDQKVGLNGIASFQCVAEGS--- 63
             E +  C+ +           L+     P  V + P      +    +  C   G+   
Sbjct: 61  EPETQPVCFFRCA-RRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPR 119

Query: 64  PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
              ++   +   +++                T  +   +++    F C A
Sbjct: 120 ASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRA 169

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 31/205 (15%), Positives = 56/205 (27%), Gaps = 18/205 (8%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERET----KPALLTV--HAPPSFVVRPQDQKVGLNGIAS 55
           ++ V  +  G Y C   +            P ++ V  +     ++      V       
Sbjct: 78  MSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVI 137

Query: 56  FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
            QC ++       F  +EG            H  V++     I  +    AG + C    
Sbjct: 138 LQCWSDIMF-EHFFLHKEGISKDPSRLVGQIHDGVSK-ANFSIGPMMLALAGTYRCYGSV 195

Query: 116 VAGSTTVRAF-----LQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRW 170
                 + A      + VT   + P    Q GP    +       L C +  S       
Sbjct: 196 THTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGP---KVQAGESVTLSCSS-RSSYDMYHL 251

Query: 171 YKNGNSLPPEDTRINVSSSGSLQID 195
            + G +            + + Q D
Sbjct: 252 SREGGAHER-RLPAVRKVNRTFQAD 275

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 29/168 (17%), Positives = 47/168 (27%), Gaps = 22/168 (13%)

Query: 27  KPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYG 86
           KP L    A PS VV P+   V      + +C        +    +E         +   
Sbjct: 24  KPFLS---AWPSAVV-PRGGHV------TLRCHYR-HRFNNFMLYKEDRI------HIPI 66

Query: 87  HLHVTQEGTLRIQGVQKEDAGFFVCSA---LSVAGSTTVRAFLQVTSVEDTPPPIVQVGP 143
                 + +  +  V    AG + C      S  G +     + +    +   P +   P
Sbjct: 67  FHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHP 126

Query: 144 SNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGS 191
                    V  L C +      H   +K G S  P      +    S
Sbjct: 127 GPLVKSGERVI-LQCWSD-IMFEHFFLHKEGISKDPSRLVGQIHDGVS 172

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 18/116 (15%), Positives = 30/116 (25%), Gaps = 11/116 (9%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERE-TKPALLTV---HAPPSFVVRPQDQKVGLNGIASFQ 57
           I  +  +  G+YQC  +        +    L V   +  P          +      S  
Sbjct: 68  IDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLT 126

Query: 58  CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
           C +   P       +EG   L        H          +  V    +G + C  
Sbjct: 127 CSSAHIPFDRFSLAKEGELSLPQ------HQSGEHPANFSLGPVDLNVSGIYRCYG 176

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 23/154 (14%), Positives = 43/154 (27%), Gaps = 15/154 (9%)

Query: 27  KPALLTVHAPPSFVVRPQDQKVGLNGIASFQC-VAEGSPLPSVFWTQEGSQVLMFPGNAY 85
            P +    A  S V+ P D  V        QC     + L  +   +  +   +     +
Sbjct: 9   MPFIS---AKSSPVI-PLDGSV------KIQCQAIREAYLTQLMIIKNSTYREIGRRLKF 58

Query: 86  GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSN 145
            +     +    I  +    AG + C              L++        P +      
Sbjct: 59  WN---ETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGL 115

Query: 146 QTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP 179
             +P  +++ L C +   P       K G    P
Sbjct: 116 VLMPGENIS-LTCSSAHIPFDRFSLAKEGELSLP 148

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 5/117 (4%)

Query: 51  NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFV 110
            G A  +C  + S L  VFW  +   +            +     L I  + + D+G + 
Sbjct: 548 GGTAELKCSQK-SNLARVFWKFQNGVLK----AESPKYGLMGRKNLLIFNLSEGDSGVYQ 602

Query: 111 CSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH 167
           C +     + TV   +    +E    P   V P+   +            V S   H
Sbjct: 603 CLSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATKVLVASTKHH 659

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A Length = 323

 Score = 48.9 bits (116), Expect = 7e-07
 Identities = 22/189 (11%), Positives = 44/189 (23%), Gaps = 23/189 (12%)

Query: 9   DEGKYQCYVQ---NMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPL 65
            +  Y C V    +   +   K A        +++ RP    + +    +  C+      
Sbjct: 83  SDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAP 142

Query: 66  P----SVFWTQEGSQVLM--------FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
                 + W++   + +                        TL +      +   + C  
Sbjct: 143 SKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLT-----VTSTLPVGTRDWIEGETYQCRV 197

Query: 114 LSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVG-SPPP-HIRWY 171
                   +      TS     P +                 L C      P    ++W 
Sbjct: 198 THPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRT-LACLIQNFMPEDISVQWL 256

Query: 172 KNGNSLPPE 180
            N   LP  
Sbjct: 257 HNEVQLPDA 265

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A Length = 323

 Score = 40.0 bits (93), Expect = 6e-04
 Identities = 24/171 (14%), Positives = 42/171 (24%), Gaps = 13/171 (7%)

Query: 32  TVHAPPSFVVRP-QDQKVGLNGIASFQCVAEG-SPLP-SVFWTQEG----SQVLMFPGNA 84
               P   +++   D            C+  G +P    + W ++G      +       
Sbjct: 4   DFTPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQ 63

Query: 85  YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPS 144
            G L  TQ   L +          + C   +  G T   +  +               PS
Sbjct: 64  EGELASTQ-SELTLSQKHWLSDRTYTCQV-TYQGHTFEDSTKKCADSNPRGVSAYLSRPS 121

Query: 145 NQTLPLHSVAFLPCQAVGSPPP----HIRWYKNGNSLPPEDTRINVSSSGS 191
              L +     + C  V   P      + W +         TR        
Sbjct: 122 PFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNG 172

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 48.1 bits (114), Expect = 9e-07
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 37/187 (19%)

Query: 31  LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPS-----VFWTQ----EGSQVLMFP 81
           + + A  + +    D         +  C    S   +     + W         +V +F 
Sbjct: 5   VEMMAGGTQITPLNDN-------VTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFE 57

Query: 82  GNAYGHLHVTQEG------------TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
                                    +LR+ G+Q E+AG + C  +           L+V 
Sbjct: 58  FFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVV 117

Query: 130 SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHI--RWYKNGNSLP-PEDTRINV 186
           +      P  ++      +  +      C++ G  P  I   W K     P P +   +V
Sbjct: 118 A-----SPASRLLLDQVGMKENEDK-YMCESSGFYPEAINITWEKQTQKFPHPIEISEDV 171

Query: 187 SSSGSLQ 193
            +  +++
Sbjct: 172 ITGPTIK 178

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 16/119 (13%)

Query: 2   ITEVKKSDEGKYQC--YVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCV 59
           +  ++  + G+Y+C   V  +  +   +   L V A P+  +   DQ         + C 
Sbjct: 86  LPGIQLEEAGEYRCEVVVTPLKAQGTVQ---LEVVASPASRLLL-DQVGMKENEDKYMCE 141

Query: 60  AEG-SPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 116
           + G  P   ++ W ++  +          H     E  +    ++  D  F V S L +
Sbjct: 142 SSGFYPEAINITWEKQTQKF--------PHPIEISEDVITGPTIKNMDGTFNVTSCLKL 192

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 6/116 (5%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERET-KPALLTV---HAPPSFVVRPQDQKVGLNGIASFQ 57
           I  + +   G+Y+CY  +  G  E   P  L V   +  P+    P    V      + Q
Sbjct: 62  IPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPS-PVVTSGENVTLQ 120

Query: 58  CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
           C +          T+EG   L +  ++        +    +  V         C  
Sbjct: 121 CGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYG 175

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 45.3 bits (107), Expect = 6e-06
 Identities = 31/168 (18%), Positives = 54/168 (32%), Gaps = 18/168 (10%)

Query: 27  KPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFW-TQEGSQVLMFPGNAY 85
           K  L    A P  V+  +   V      + +C  +G+     +   +EGS     P +  
Sbjct: 5   KATLW---AEPGSVI-SRGNSV------TIRC--QGTLEAQEYRLVKEGSPE---PWDTQ 49

Query: 86  GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSN 145
             L    +    I  + +  AG + C   S AG +     L++        P +   PS 
Sbjct: 50  NPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSP 109

Query: 146 QTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQ 193
                 +V  L C +           + G+          ++ SG  Q
Sbjct: 110 VVTSGENVT-LQCGS-RLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQ 155

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 44.8 bits (105), Expect = 2e-06
 Identities = 16/103 (15%), Positives = 27/103 (26%), Gaps = 10/103 (9%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPL---PSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
              F+ +P    V     A       G  L   P++ W +     L     A      + 
Sbjct: 12  TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESH 71

Query: 93  EG-------TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
                     L I  V   D G++     +     +    + V
Sbjct: 72  NSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 46.8 bits (110), Expect = 3e-06
 Identities = 26/160 (16%), Positives = 39/160 (24%), Gaps = 12/160 (7%)

Query: 31  LTVHAPPSFVVRPQDQKVGLNGIASFQCVA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLH 89
           L     P+  V             +  C   E     +V W          P    G   
Sbjct: 1   LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAG--- 57

Query: 90  VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLP 149
                 L ++ VQ  D+G + C     AG       L    V+  P            L 
Sbjct: 58  --MGRRLLLRSVQLHDSGNYSCYR---AGRPAGTVHLL---VDVPPEEPQLSCFRKSPLS 109

Query: 150 LHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS 189
                + P          +   +   + P ED +     S
Sbjct: 110 NVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYS 149

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 42.5 bits (99), Expect = 9e-05
 Identities = 9/65 (13%), Positives = 16/65 (24%), Gaps = 2/65 (3%)

Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQ 193
             P  +V     T        L C  V       + W     +     +R        L 
Sbjct: 5   RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGR-RLL 63

Query: 194 IDVLR 198
           +  ++
Sbjct: 64  LRSVQ 68

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 46.5 bits (110), Expect = 4e-06
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 5/102 (4%)

Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDT--PPPIVQVGPSNQTLPLHS 152
           ++ I  +   DAG + C         T       T +     P   V  GP+ +  P H+
Sbjct: 75  SISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHT 134

Query: 153 VAFLPCQAVGSPPPHI--RWYKNGNSLPPEDTRINVSSSGSL 192
           V+   C++ G  P  I  +W+KNGN L    T ++       
Sbjct: 135 VS-FTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVS 175

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 46.5 bits (110), Expect = 4e-06
 Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 24/193 (12%)

Query: 2   ITEVKKSDEGKYQCYVQN-----MVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASF 56
           I+ +  +D G Y C            +      L     P + VV     +       SF
Sbjct: 78  ISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSF 137

Query: 57  QCVAEG-SPLP-SVFWTQEGSQVLMF--------PGNAYGHLHVTQEGTLRIQGVQKEDA 106
            C + G SP   ++ W + G+++  F           +Y     +   T ++   +++  
Sbjct: 138 TCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSY-----SIHSTAKVVLTREDVH 192

Query: 107 GFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP 166
              +C    V             S     PP ++V      +   +   + CQ     P 
Sbjct: 193 SQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQ--PVRAENQVNVTCQVRKFYPQ 250

Query: 167 HIR--WYKNGNSL 177
            ++  W +NGN  
Sbjct: 251 RLQLTWLENGNVS 263

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 45.6 bits (107), Expect = 4e-06
 Identities = 21/137 (15%), Positives = 34/137 (24%), Gaps = 17/137 (12%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERET---KPALLTV----HAPPSFVVRPQDQKVGLNGIA 54
           I + +  D G Y   V+     + +       L V      P    + P +         
Sbjct: 86  IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSC 145

Query: 55  SFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 114
           S     E  P  +  WT      L            T+   L +    ++      C   
Sbjct: 146 SLPGSCEAGPPLTFSWTGNALSPL--------DPETTRSSELTLTPRPEDHGTNLTCQMK 197

Query: 115 SVAGSTTVRA--FLQVT 129
                 T      L V+
Sbjct: 198 RQGAQVTTERTVQLNVS 214

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 20/109 (18%), Positives = 31/109 (28%), Gaps = 7/109 (6%)

Query: 95  TLRIQGVQKEDAGFFVCSALSV--AGSTTVRAFLQVT-SVEDTPPPIVQVGPSNQTLPLH 151
           +L I   + ED G +            +  +  L +  +     P I  + P     P  
Sbjct: 83  SLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTR 142

Query: 152 SVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDD 200
               LP      PP    W  N  S          + S  L +    +D
Sbjct: 143 LSCSLPGSCEAGPPLTFSWTGNALSPLDP----ETTRSSELTLTPRPED 187

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 43.8 bits (103), Expect = 5e-06
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 17/112 (15%)

Query: 35  APPSFVVRP-QDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQV-----LMFPGNAYGHL 88
           +  + +V   +D +V     A F    + S +    W   G ++                
Sbjct: 6   SGTARLVAGLEDVQVYDGEDAVFSL--DLSTIIQGTWFLNGEELKSNEPEGQVEPGALRY 63

Query: 89  HVTQEGT---LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
            + Q+G    L +  V+ +D+G  V             A L   +++++  P
Sbjct: 64  RIEQKGLQHRLILHAVKHQDSGALVG---FSCPGVQDSAAL---TIQESSGP 109

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 45.2 bits (107), Expect = 6e-06
 Identities = 30/169 (17%), Positives = 51/169 (30%), Gaps = 19/169 (11%)

Query: 27  KPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFW-TQEGSQVLMFPGNAY 85
           KP   T+ A P  V+  Q   V      + +C  +G      +   +E       P    
Sbjct: 5   KP---TLWAEPGSVI-TQGSPV------TLRC--QGGQETQEYRLYREKKT---APWITR 49

Query: 86  GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR-AFLQVTSVEDTPPPIVQVGPS 144
               + ++G   I  +  E  G + C   S     +     L++        P +   PS
Sbjct: 50  IPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPS 109

Query: 145 NQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQ 193
                  +V  L C +           K G    P+       + GS +
Sbjct: 110 PVVNSGGNVT-LQCDS-QVAFDGFILCKEGEDEHPQCLNSQPHARGSSR 156

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 7/117 (5%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETK-----PALLTVHAPPSFVVRPQDQKVGLNGIASF 56
           I  +     G+Y+CY  +    R          +   +  P+   +P    V   G  + 
Sbjct: 62  IPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQP-SPVVNSGGNVTL 120

Query: 57  QCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
           QC ++          +EG        N+  H   +      +  V      ++ C A
Sbjct: 121 QCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYA 176

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 26/157 (16%), Positives = 47/157 (29%), Gaps = 16/157 (10%)

Query: 27  KPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYG 86
           KP +    A P F+V P++++V      +  C              EGS   +       
Sbjct: 7   KPFIW---AEPHFMV-PKEKQV------TICCQGN-YGAVEYQLHFEGSLFAVDRPKPPE 55

Query: 87  HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQ 146
            ++   +    I  +    AG + C        +     L +   E    P + V P  +
Sbjct: 56  RIN---KVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPE 112

Query: 147 TLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTR 183
            +    V    C+   +        K G S   +   
Sbjct: 113 VISGEKVT-FYCRL-DTATSMFLLLKEGRSSHVQRGY 147

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 25/177 (14%), Positives = 43/177 (24%), Gaps = 20/177 (11%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPAL-LTVHA--PPSFVVRPQDQKVGLNGIASFQC 58
           I ++     G+Y C  +      E    L L V        +      +V      +F C
Sbjct: 64  IPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYC 123

Query: 59  VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA----- 113
             + +        +EG        +     +   +    +  V     G + C       
Sbjct: 124 RLD-TATSMFLLLKEGRS------SHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNH 176

Query: 114 LSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRW 170
                S  V   L VT   +      +              +L     G    H  W
Sbjct: 177 AWSFPSEPV--KLLVTGDIENTSLAPE---DPTFPADTWGTYLLTTETGLQKDHALW 228

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 24/158 (15%), Positives = 39/158 (24%), Gaps = 23/158 (14%)

Query: 32  TVHAPPSFVVRPQDQKVGLN--GIASFQCVAEGS-PLPSVFWTQEGSQVLMFPGNAYGHL 88
           ++   P   V P +  V +         C    +    SV W    + +           
Sbjct: 2   SLQVKP-LQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSL-------GAVQ 53

Query: 89  HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTL 148
             T    L ++      AG  VC       +      L V +     P  + V P+    
Sbjct: 54  SDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAF----PNQLTVSPAA--- 106

Query: 149 PLHSVAFLPCQAVGSPPP-----HIRWYKNGNSLPPED 181
            +     + C A    P             G  L    
Sbjct: 107 LVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQ 144

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 33/166 (19%), Positives = 51/166 (30%), Gaps = 18/166 (10%)

Query: 27  KPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVF-WTQEGSQVLMFPGNAY 85
           KP L    A P  V+      V      +  C  +G+     +   +E S       N  
Sbjct: 5   KPTLW---AEPGSVI-SWGNSV------TIWC--QGTLEAREYRLDKEESPAPWDRQN-- 50

Query: 86  GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSN 145
             L    +    I  + ++ AG + C   S  G +     L++        P +   PS 
Sbjct: 51  -PLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSP 109

Query: 146 QTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGS 191
                 SV  L CQ+  SP       K   + P    R    +   
Sbjct: 110 LVTSGKSVT-LLCQS-RSPMDTFLLCKERAAHPLLCLRSEHGAQQH 153

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 7/115 (6%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERET-KPALLTV---HAPPSFVVRPQDQKVGLNGIASFQ 57
           I  + +   G+Y+CY ++ VG  +   P  L +   ++ P+    P    V      +  
Sbjct: 62  IPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALP-SPLVTSGKSVTLL 120

Query: 58  CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 112
           C +  SP+ +    +E +   +    +       Q     +  V     G + C 
Sbjct: 121 CQSR-SPMDTFLLCKERAAHPLLCLRSEHGAQQHQ-AEFPMSPVTSVHGGTYRCF 173

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 42.1 bits (98), Expect = 3e-05
 Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 10/113 (8%)

Query: 34  HAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGH------ 87
            +         D+ V   G    +C  +     S+ W+    Q L F             
Sbjct: 36  LSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQL 95

Query: 88  LHVTQ-EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIV 139
           +  T  E ++ I  V   D G + CS  ++   T   + + V  +     PI+
Sbjct: 96  VTSTPHELSISISNVALADEGEYTCSIFTMPVRTAK-SLVTV--LGIPQKPII 145

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 41.1 bits (96), Expect = 5e-05
 Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 16/115 (13%)

Query: 40  VVRPQDQKVGLNGIASFQCVAEGSPLP--SVFWTQEGSQVLMFPGN-------AY-GHLH 89
           +    +      G    QC    +      V W Q+   + +   +       ++   + 
Sbjct: 7   IETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVA 66

Query: 90  VTQEGTLRIQGVQKEDAGFFVCS-ALSVAGSTTVRAFLQVTSVEDTPPPIVQVGP 143
                 L +Q +   D G + C       G+ T R FL+V         + + G 
Sbjct: 67  PGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEV-----LESSVAEHGA 116

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* Length = 214

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 34/157 (21%), Positives = 52/157 (33%), Gaps = 20/157 (12%)

Query: 37  PS-FVVRPQDQKVGLNGIASFQCVAEGSPLPS---VFWTQEGSQVLM------FPGNAYG 86
           P   + RP  + + L   A+  C   G    S     WT    +  +           Y 
Sbjct: 4   PRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCY- 62

Query: 87  HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQV-GPSN 145
               +    L            F C+A      T + A L  +   +T  P V +  P +
Sbjct: 63  ----SVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKS--GNTFRPEVHLLPPPS 116

Query: 146 QTLPLHSVAFLPCQAVGSPPPHI--RWYKNGNSLPPE 180
           + L L+ +  L C A G  P  +  RW +    LP E
Sbjct: 117 EELALNELVTLTCLARGFSPKDVLVRWLQGSQELPRE 153

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} Length = 523

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 29/173 (16%), Positives = 52/173 (30%), Gaps = 13/173 (7%)

Query: 13  YQCYVQNMVGERETKPALLTVHAPPSFVVRP-QDQKVGLNGIASFQCVAEG----SPLPS 67
           Y C V +     +    +  +  P  F+  P     + ++      CV        P   
Sbjct: 295 YICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVK 354

Query: 68  VFWTQEGSQVL----MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR 123
             W  +G QV           Y   +      L +      D   + C   + A    + 
Sbjct: 355 FNWYVDGVQVHNAKTKPREQQYNSTY-RVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIE 413

Query: 124 AFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVG-SPPP-HIRWYKNG 174
             +     +   P +  + PS + +  + V+ L C   G  P    + W  NG
Sbjct: 414 KTISKAKGQPREPQVYTLPPSREEMTKNQVS-LTCLVKGFYPSDIAVEWESNG 465

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 26/157 (16%), Positives = 45/157 (28%), Gaps = 16/157 (10%)

Query: 27  KPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYG 86
           KP    + A P F+V P++++V      +  C              EGS   +       
Sbjct: 4   KP---FIWAEPHFMV-PKEKQV------TICCQGN-YGAVEYQLHFEGSLFAVDRPKPPE 52

Query: 87  HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQ 146
                 +    I  +    AG + C        +     L +   E    P + V P  +
Sbjct: 53  R---INKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPE 109

Query: 147 TLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTR 183
            +    V    C+   +        K G S   +   
Sbjct: 110 VISGEKVT-FYCRL-DTATSMFLLLKEGRSSHVQRGY 144

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 15/115 (13%), Positives = 30/115 (26%), Gaps = 10/115 (8%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERET-KPALLTVHA--PPSFVVRPQDQKVGLNGIASFQC 58
           I ++     G+Y C  +      E      L V        +      +V      +F C
Sbjct: 61  IPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYC 120

Query: 59  VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
             + +        +EG        +     +   +    +  V     G + C  
Sbjct: 121 RLD-TATSMFLLLKEGRS------SHVQRGYGKVQAEFPLGPVTTAHRGTYRCFG 168

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A Length = 207

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 24/149 (16%), Positives = 38/149 (25%), Gaps = 15/149 (10%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGS----PLPSVFWTQEGSQVLMF-PGNAYGHLHV 90
           PP          + +       CV        P     W  +  +V            + 
Sbjct: 8   PPKP-----KDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNS 62

Query: 91  TQ--EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTL 148
           T      L I      +   F C   S A    +   +  T      P +  + P  + +
Sbjct: 63  TFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQM 122

Query: 149 PLHSVAFLPCQAVG-SPPP-HIRWYKNGN 175
               V+ L C      P    + W  NG 
Sbjct: 123 AKDKVS-LTCMITDFFPEDITVEWESNGQ 150

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 35/160 (21%)

Query: 56  FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
             C  +     ++ W + G ++   P     HL +           + ED+G++VC   +
Sbjct: 19  LTCPLDSDE--NLKWEKNGQEL---PQKHDKHLVLQD-------FSEVEDSGYYVCYTPA 66

Query: 116 VAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVA--------------------F 155
              +T +    +V S +D      +   + +       +                     
Sbjct: 67  SNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVL 126

Query: 156 LPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQID 195
           L C   G     I+W K+G+ + P +   N  + G+   D
Sbjct: 127 LTC---GLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKD 163

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNG 52
           I  V+ SDEG Y C+ ++   + E     L V  P  ++   + +    + 
Sbjct: 89  IQNVRFSDEGGYTCFFRDHSYQEEAA-VELKVEDPFYWINPGRSRSHHHHH 138

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 30/168 (17%), Positives = 51/168 (30%), Gaps = 19/168 (11%)

Query: 41  VRPQDQKVGLNGIASFQCVAEGSPLPSVFW-TQEGSQVLMFPGNAYGHLHVTQEGTLRIQ 99
           V P    +   G     C         +   T    + L+ PGN               +
Sbjct: 4   VSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGN----------NRKVYE 53

Query: 100 GVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQ 159
               ++    +C +    G +T + FL V       P  V++ P     P+     L CQ
Sbjct: 54  LSNVQEDSQPMCYSNCPDGQSTAKTFLTVY----WTPERVELAPLPSWQPVGKQLTLRCQ 109

Query: 160 AVGSPPPH---IRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAE 204
             G  P     +   +    L  E   +   +  +  + V RD   A+
Sbjct: 110 VEGGAPRAQLTVVLLRGEKELKRE-PAVGEPAEVTTTVLVRRDHHGAQ 156

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ... Length = 238

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 9/94 (9%)

Query: 94  GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSV-------EDTPPPIVQVGPSNQ 146
            +L ++         + C++    GS   + F   T +       + TPP +    PS  
Sbjct: 72  FSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKA 131

Query: 147 TLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSLP 178
            +     A L C A G  P H+   W+ NG  + 
Sbjct: 132 EIANKQKATLVCLARGFFPDHVELSWWVNGKEVH 165

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 24/116 (20%), Positives = 36/116 (31%), Gaps = 12/116 (10%)

Query: 2   ITEVKKSDEGKYQCYVQNMVGERET-KPALLTV---HAPPSFVVRPQDQKVGLNGIASFQ 57
           I  +K+S  G+Y+C  QN            L      A PS   +P    V   G  + Q
Sbjct: 56  IPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQ 114

Query: 58  CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
           C             +EG          Y +       +  I  V    +G + C +
Sbjct: 115 CQTR-YGFDQFALYKEGDPAP------YKNPERWYRASFPIITVTAAHSGTYRCYS 163

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} Length = 231

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 31/156 (19%), Positives = 55/156 (35%), Gaps = 10/156 (6%)

Query: 35  APPS-FVVRPQDQKVGLNGIASFQCVAEGSPLPS---VFWTQEGS-QVLMFPGNAYGHLH 89
           +P   + + P   ++ ++  A  +C+    P  S   V WT+E S  +   P     H +
Sbjct: 11  SPIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFN 70

Query: 90  VTQ--EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQT 147
            T      + +          F C+         +   +   +   TPP I    P  + 
Sbjct: 71  GTYSASSAVPVSTQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEE 130

Query: 148 LPLHSVAFLPCQAVGSPPP--HIRWYKNGNSLPPED 181
           L L  V    C   G  P    IRW ++  ++P  +
Sbjct: 131 LSLSRVTLS-CLVRGFRPRDIEIRWLRDHRAVPATE 165

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* Length = 239

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 23/154 (14%), Positives = 36/154 (23%), Gaps = 25/154 (16%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLP----SVFWTQEGSQVLM--------FPGN 83
           PP          +G        CV              W  +  +V             +
Sbjct: 22  PPKT-----KDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNS 76

Query: 84  AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGP 143
                       L I      +   F C   S A    +   +         P +  + P
Sbjct: 77  TLR-----SVSELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAP 131

Query: 144 SNQTLPLHSVAFLPCQAVG-SPPP-HIRWYKNGN 175
             + +    V+   C   G  PP  +  W  NG 
Sbjct: 132 PKEEMTQSQVSIT-CMVKGFYPPDIYTEWKMNGQ 164

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} Length = 270

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 8/92 (8%)

Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTV------RAFLQVTSVEDTPPPIVQVGPSNQTL 148
           +L IQ  +  D+  ++C++       T       R  +        PP +    PS   +
Sbjct: 102 SLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEI 161

Query: 149 PLHSVAFLPCQAVGSPPPHIR--WYKNGNSLP 178
                A L C A G  P H+   W+ NG  + 
Sbjct: 162 SHTQKATLVCLATGFYPDHVELSWWVNGKEVH 193

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121

 Score = 38.4 bits (89), Expect = 5e-04
 Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 16/113 (14%)

Query: 44  QDQKVGLNGI----ASFQC-VAEGSPLPSVFW---------TQEGSQVLMFPGNAYGHLH 89
           Q   V +  +     +     +       + W           +  +   F     G + 
Sbjct: 8   QGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVR 67

Query: 90  V-TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQV 141
           +  Q G L I  VQKED   ++   L   G+       ++  ++  P P++++
Sbjct: 68  LDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKI-KLQVLDPVPKPVIKI 119

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 40.4 bits (94), Expect = 5e-04
 Identities = 11/159 (6%), Positives = 28/159 (17%), Gaps = 36/159 (22%)

Query: 37  PSFVVRPQDQKVGLNGIASFQCV-------AEGSPLPSVFWTQEGSQVLMFPGNAYGHLH 89
           P   + P+   V L+   +  CV               + W      +          + 
Sbjct: 4   PCGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTI----PKEQYTII 59

Query: 90  VTQEGTLRIQGVQKEDAGF-FVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTL 148
                ++    +   +                     +      +  P  +         
Sbjct: 60  NRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPE-KPKNLS-------- 110

Query: 149 PLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVS 187
                    C           W          +T +  +
Sbjct: 111 ---------CIVNEGKKMRCEW------DGGRETHLETN 134

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590

 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 6/81 (7%)

Query: 33  VHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
              P       Q   +  N      C  E S   +  W  + +        +    H + 
Sbjct: 497 CPNPKPDKAPLQKVSLAPNSRYYLSCPME-SRHATYSWRHKEN-----VEQSCEPGHQSP 550

Query: 93  EGTLRIQGVQKEDAGFFVCSA 113
              L I+ +  +  G + C A
Sbjct: 551 NCILFIENLTAQQYGHYFCEA 571

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 25/158 (15%), Positives = 44/158 (27%), Gaps = 21/158 (13%)

Query: 27  KPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYG 86
           KP+LL   A P  +V+ ++           QC      +   F                 
Sbjct: 8   KPSLL---AHPGPLVKSEET-------VILQC--WSDVMFEHFLLHREGMFNDTLRLIGE 55

Query: 87  HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF-----LQVTSVEDTPPPIVQV 141
           H     +    I  + ++ AG + C          V A      + +  +     P +  
Sbjct: 56  HHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGL--YEKPSLSA 113

Query: 142 GPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP 179
            P    L   +V  L C +  S        + G +   
Sbjct: 114 QPGPTVLAGENVT-LSCSS-RSSYDMYHLSREGEAHER 149

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	292
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	100.0
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	100.0
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	100.0
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.98
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.98
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.98
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.98
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.98
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.97
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.97
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.97
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.97
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.97
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.97
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.97
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.97
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.97
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.97
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.97
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.97
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.97
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.97
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.97
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.97
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.96
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.96
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.96
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.96
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.96
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.96
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.96
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.96
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.96
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.96
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.95
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.95
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.95
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.95
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.95
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.94
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.94
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.94
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.94
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.94
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.94
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.94
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.93
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.93
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.93
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.93
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.93
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.93
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.93
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.93
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.93
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.93
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.93
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.93
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.92
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.92
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.92
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.92
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.92
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.92
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.92
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.92
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.91
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.91
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.91
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.91
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.91
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.91
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.91
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.91
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.91
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.91
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.91
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.9
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.9
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.9
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.9
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.9
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.89
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.89
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.89
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.89
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.88
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.88
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.88
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.87
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.87
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.87
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.87
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.87
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.87
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.87
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.87
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.87
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.87
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.86
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.86
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.86
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.86
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.86
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.85
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.85
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.85
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.85
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.85
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.85
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.84
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.84
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.84
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.84
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.84
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.84
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.84
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.84
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.84
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.83
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.83
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.83
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.83
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.83
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.83
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.83
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.83
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.83
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.82
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.82
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.82
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.82
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.82
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.82
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.81
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.81
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.81
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.8
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.8
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.8
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.8
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.8
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.79
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.79
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.79
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.79
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.79
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.79
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.79
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.79
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.79
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.79
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.79
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.79
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.79
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.78
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.78
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.78
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.78
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.78
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.78
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.78
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.78
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.78
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.78
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.77
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.77
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.77
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.77
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.77
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.77
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.77
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.77
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.76
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.76
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.76
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.76
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.76
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.76
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.75
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.75
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.75
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.75
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.75
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.75
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.74
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.74
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.74
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.74
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.74
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.74
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.73
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.73
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.73
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.73
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.73
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.73
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.73
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.73
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.73
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.73
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.73
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.73
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.72
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.72
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.72
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.72
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.72
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.72
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.72
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.72
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.71
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.71
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.71
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.71
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.71
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.71
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.71
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.71
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.71
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.71
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.71
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.71
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.71
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.7
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.7
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.7
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.7
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.7
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.7
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.7
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.7
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.7
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.69
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.69
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.69
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.68
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.68
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.68
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.68
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.68
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.67
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.67
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.67
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.67
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.67
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.67
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.67
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.66
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.66
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.66
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.66
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.66
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.66
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.66
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.66
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.65
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.65
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.65
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.65
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.65
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.65
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.65
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.65
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.65
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.65
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.65
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.65
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.65
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.64
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.64
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.64
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.64
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.63
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.63
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.63
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.63
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.63
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.63
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.63
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.63
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.63
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.63
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.63
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.62
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.62
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.62
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.62
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.62
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.62
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.61
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.61
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.61
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.61
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.61
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.61
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.61
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.61
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.61
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.6
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.6
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.6
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.6
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.6
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.6
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.6
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.6
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.6
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.6
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.59
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.59
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.59
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.59
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.59
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.59
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.59
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.59
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.59
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.59
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.59
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.59
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.59
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.59
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.59
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.58
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.58
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.58
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.58
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.58
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.58
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.58
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.58
1he7_A	126	High affinity nerve growth factor receptor; transf	99.57
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.57
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.57
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.57
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.56
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.56
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.56
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.56
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.56
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.56
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.56
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.55
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.55
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.55
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.55
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.55
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.55
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.55
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.54
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.54
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.54
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.54
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.53
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.53
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.53
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.53
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.53
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.53
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.53
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.53
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.53
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.52
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.52
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.52
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.52
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.52
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.52
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.52
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.52
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.52
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.51
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.51
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.51
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.51
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.51
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.51
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.51
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.51
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.5
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.5
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.5
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.5
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.5
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.5
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.5
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.49
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.49
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.49
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.49
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.49
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.49
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.49
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.49
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.48
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.48
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.48
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.48
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.48
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.48
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.47
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.47
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.47
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.46
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.46
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.46
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.46
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.46
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.46
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.46
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.46
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.45
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.45
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.44
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.44
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.44
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.44
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.44
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.44
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.44
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.43
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.43
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.43
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.42
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.42
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.42
2ens_A	96	Advanced glycosylation END product-specific recept	99.42
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.42
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.42
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.42
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.41
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.41
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.41
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.41
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.41
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.4
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.4
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.4
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.4
1he7_A	126	High affinity nerve growth factor receptor; transf	99.39
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.39
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.39
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.39
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.39
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.39
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.38
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.38
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.38
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	99.38
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.38
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.38
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.38
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.38
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.37
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.37
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.37
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.37
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.37
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.37
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.37
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.37
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.36
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.36
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.36
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.35
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.35
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.35
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.34
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.34
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.34

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=2.1e-41  Score=285.44  Aligned_cols=273  Identities=23%  Similarity=0.380  Sum_probs=216.3

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCC-ccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeec
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQ-DQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMF   80 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~   80 (292)
                      |.+++.+|+|.|+|.+.|..|..... +.|.|..+|.+..... ...+.+|+.+.|.|.+.|.|.+.+.|++++..+...
T Consensus       257 i~~v~~~D~G~Y~C~a~N~~g~~~~~-~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~  335 (570)
T 3b43_A          257 VLKVTKGDAGQYTCYASNVAGKDSCS-AQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQES  335 (570)
T ss_dssp             ESSBCGGGCEEEEEEEEETTEEEEEE-EEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCS
T ss_pred             EcccCcccCEEEEEEEECCCCcEEEE-EEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCC
Confidence            67899999999999999998887666 8999999998776543 345788999999999999999999999999876321


Q ss_pred             cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEe
Q psy15128         81 PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA  160 (292)
Q Consensus        81 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~  160 (292)
                        .............|.|.+++.+|+|.|+|.|.|..|.......|.|..     +|.+...+....+.+|+.+.|.|.+
T Consensus       336 --~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~-----~P~~~~~~~~~~~~~G~~v~l~C~~  408 (570)
T 3b43_A          336 --SKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE-----PPVFRKKPHPVETLKGADVHLECEL  408 (570)
T ss_dssp             --SSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEEC-----CCEECSCCCCEEECTTCCEEEEEEE
T ss_pred             --CcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecC-----CCeeecCCCceeecCCCEEEEEEEE
Confidence              111111122345799999999999999999999999888888877763     6666666777778899999999999


Q ss_pred             ccCCCCceEEEeCCeeCCCCCccEEEcCC---CcEEEEeeecCCCCCC-----------------------------cce
Q psy15128        161 VGSPPPHIRWYKNGNSLPPEDTRINVSSS---GSLQIDVLRDDFRAEP-----------------------------KDT  208 (292)
Q Consensus       161 ~~~p~~~~~W~~~~~~l~~~~~~~~~~~~---~~l~i~~~~~~d~g~~-----------------------------~~~  208 (292)
                      .+.|.|.+.|+|++.++.... ++.+..+   ..|.|.++..+|+|.|                             ...
T Consensus       409 ~g~P~p~v~W~k~g~~l~~~~-~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~~~~~~  487 (570)
T 3b43_A          409 QGTPPFQVSWHKDKRELRSGK-KYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDI  487 (570)
T ss_dssp             ESSSSCCCEEEETTEECCSSS-SEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEEEECCCCB
T ss_pred             ecCCCCEEEEEECCEECcCCC-CEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCcccccCCCc
Confidence            999999999999999987653 3333222   3688999999999922                             344


Q ss_pred             EEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128        209 RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       209 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      .+.+|+.+.|.|.+ .|.|++.+.|++++..+.. .+.++.+...+     ....|.|..+..+|+|.|+|.|+|.+|.+
T Consensus       488 ~~~~g~~~~l~c~~-~g~p~~~v~W~k~~~~~~~-~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~  560 (570)
T 3b43_A          488 STVVGEEVQLQATI-EGAEPISVAWFKDKGEIVR-ESDNIWISYSE-----NIATLQFSRAEPANAGKYTCQIKNEAGTQ  560 (570)
T ss_dssp             CCBTTCCEEEEEEE-ESCSSCCCEEEETTEECCC-CTTTEEECCCS-----SEEEEEESSCCTTCCEEEEEEEECSSCEE
T ss_pred             eecCCCeEEEEEEE-ecCCCCEEEEEeCCeEecc-CCCeEEEEECC-----CEEEEEECcCCHHHCEEEEEEEEECCcEE
Confidence            56789999999998 8999999999999866532 23334332221     12368899999999999999999999998


Q ss_pred             cc
Q psy15128        289 QH  290 (292)
Q Consensus       289 ~~  290 (292)
                      +.
T Consensus       561 ~~  562 (570)
T 3b43_A          561 EC  562 (570)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=2.6e-40  Score=278.80  Aligned_cols=273  Identities=24%  Similarity=0.426  Sum_probs=210.8

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEe---CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEe
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH---APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVL   78 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~   78 (292)
                      |.+++.+|+|.|+|.+.|..|..... +.|.|.   .+|.+...+....+.+|+.++|.|.+.|.|.+.+.|++++..+.
T Consensus       161 i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~  239 (570)
T 3b43_A          161 ILQTDQSHVGQYNCSASNPLGTASSS-AKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIR  239 (570)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEEEE-EEEEEECCCCCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECC
T ss_pred             ECcCChHHCEEEEEEEEeCCcEEEEE-EEEEEcCCCCCCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCEECc
Confidence            66888999999999999988876655 677764   35677777778888999999999999999999999999998763


Q ss_pred             eccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeC-CCCceecCCCeEEEE
Q psy15128         79 MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVG-PSNQTLPLHSVAFLP  157 (292)
Q Consensus        79 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~-~~~~~~~~g~~v~l~  157 (292)
                        .+.............|.|.+++.+|+|.|+|.+.|..|.....+.|.|..     +|.+... .....+.+|+.+.|.
T Consensus       240 --~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~-----~p~~~~~~~~~~~v~~g~~~~l~  312 (570)
T 3b43_A          240 --PGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE-----PPRFIKKLEPSRIVKQDEHTRYE  312 (570)
T ss_dssp             --TTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBC-----CCEEEECCCSBCCEESSCEEEEE
T ss_pred             --CCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeec-----CCcccccCCCccEEcCCCcEEEE
Confidence              11111111122346899999999999999999999988777777666642     4444433 333457899999999


Q ss_pred             eEeccCCCCceEEEeCCeeCCCCCcc-EEE-cCCCcEEEEeeecCCCC-----------------------------CCc
Q psy15128        158 CQAVGSPPPHIRWYKNGNSLPPEDTR-INV-SSSGSLQIDVLRDDFRA-----------------------------EPK  206 (292)
Q Consensus       158 C~~~~~p~~~~~W~~~~~~l~~~~~~-~~~-~~~~~l~i~~~~~~d~g-----------------------------~~~  206 (292)
                      |.+.+.|.+.+.|+|++.++...... +.. ...+.|.|.++..+|+|                             .+.
T Consensus       313 C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~  392 (570)
T 3b43_A          313 CKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPH  392 (570)
T ss_dssp             EEEESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCC
T ss_pred             EEEeeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCC
Confidence            99999999999999999998765321 211 22347999999999999                             224


Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      ...+.+|+.+.|.|.+ .|.|.+.+.|+++|.++..  +.++.+..++.     ...|.|..+..+|+|.|+|.|.|..|
T Consensus       393 ~~~~~~G~~v~l~C~~-~g~P~p~v~W~k~g~~l~~--~~~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~A~N~~G  464 (570)
T 3b43_A          393 PVETLKGADVHLECEL-QGTPPFQVSWHKDKRELRS--GKKYKIMSENF-----LTSIHILNVDSADIGEYQCKASNDVG  464 (570)
T ss_dssp             CEEECTTCCEEEEEEE-ESSSSCCCEEEETTEECCS--SSSEEEEEETT-----EEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             ceeecCCCEEEEEEEE-ecCCCCEEEEEECCEECcC--CCCEEEEEcCC-----EEEEEECCCChhhCEEEEEEEEECCC
Confidence            5567889999999998 8999999999999999863  33333322221     22588999999999999999999999


Q ss_pred             cccc
Q psy15128        287 QQQH  290 (292)
Q Consensus       287 ~~~~  290 (292)
                      +++.
T Consensus       465 ~~~~  468 (570)
T 3b43_A          465 SDTC  468 (570)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            8753

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=1.9e-39  Score=262.87  Aligned_cols=275  Identities=23%  Similarity=0.376  Sum_probs=214.0

Q ss_pred             ccCCcCCCeeEEEEEEecc-cccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeecc
Q psy15128          3 TEVKKSDEGKYQCYVQNMV-GERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFP   81 (292)
Q Consensus         3 ~~v~~~D~G~Y~C~~~~~~-~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~   81 (292)
                      .+++.+|+|.|+|.+.+.. +......+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... 
T Consensus        87 ~~~~~~D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-  165 (403)
T 3laf_A           87 SRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPI-  165 (403)
T ss_dssp             BTTBCSSCEEEEEEEECGGGCEEECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCC-
T ss_pred             cCCCCCcceEEEEEEEeCCCccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEecccc-
Confidence            3447889999999999653 44444458889988888887888889999999999999999899999999998765321 


Q ss_pred             CCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCee-EEEEEEEEeecCCC-CCeEEeCCCCceecCCCeEEEEeE
Q psy15128         82 GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT-VRAFLQVTSVEDTP-PPIVQVGPSNQTLPLHSVAFLPCQ  159 (292)
Q Consensus        82 ~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~-~~~~~~~~~~~~~~~g~~v~l~C~  159 (292)
                       ....+......+.|.|.+++.+|+|.|+|.+.+..+... ....+.+....... ++.+...+....+.+|+.+.|.|.
T Consensus       166 -~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~  244 (403)
T 3laf_A          166 -PGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECC  244 (403)
T ss_dssp             -TTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCE
T ss_pred             -CCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEE
Confidence             122333444566899999999999999999998766532 34555554322111 123445566777889999999999


Q ss_pred             eccCCCCceEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCCC-----------------------------CcceEE
Q psy15128        160 AVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAE-----------------------------PKDTRV  210 (292)
Q Consensus       160 ~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g~-----------------------------~~~~~~  210 (292)
                      +.+.|.+.+.|++++..+............+.|.|.++..+|+|.                             +....+
T Consensus       245 ~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~  324 (403)
T 3laf_A          245 VSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYA  324 (403)
T ss_dssp             EEEESCCEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEC
T ss_pred             cCCCCCCeEEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCcceEE
Confidence            999999999999999998876666666677789999999999992                             345567


Q ss_pred             eCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        211 ASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       211 ~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      .+|+.+.|.|.+ .+.|.+.+.|+++|..+.  ...+.....+        ..|.|..+..+|+|.|+|.|.|..|+++.
T Consensus       325 ~~g~~v~l~C~~-~g~p~p~v~W~~~g~~~~--~~~~~~~~~~--------~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  393 (403)
T 3laf_A          325 YESMDIEFECAV-SGKPVPTVNWMKNGDVVI--PSDYFQIVGG--------SNLRILGVVKSDEGFYQCVAENEAGNAQS  393 (403)
T ss_dssp             CTTCCEEECCEE-EEESCCEEEEEETTEECC--CSSSEEEETT--------TEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             ecCCeEEEEEEE-eeccCCEEEEEECCEECC--CCCcEEEecC--------ccEEEeccccccCEEEEEEEEcCCceEEE
Confidence            789999999998 889999999999999885  3333333222        25889999999999999999999999865

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=2.1e-37  Score=264.98  Aligned_cols=255  Identities=19%  Similarity=0.372  Sum_probs=203.6

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcE-EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeec
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSF-VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMF   80 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~   80 (292)
                      |.+++.+|+|.|+|.+.|..|...+..+.|.|..+|.. ...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.  
T Consensus       346 i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~--  423 (642)
T 1e07_A          346 LLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQ--  423 (642)
T ss_pred             EeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcC--
Confidence            67899999999999999988876555588888876643 455666788899999999999999999999999987652  


Q ss_pred             cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEe
Q psy15128         81 PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA  160 (292)
Q Consensus        81 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~  160 (292)
                                 ....|.|.++..+|.|.|+|.+.|..|.......+.+.+.....+|.+.. .....+.+|+.+.|.|.+
T Consensus       424 -----------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~-~~~~~v~~g~~v~l~C~~  491 (642)
T 1e07_A          424 -----------HTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISS-NNSKPVEDKDAVAFTCEP  491 (642)
T ss_pred             -----------CCceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEec-CCceeecCCCeEEEEEEC
Confidence                       13469999999999999999999988776655555554443333455443 344567899999999999


Q ss_pred             ccCCCCceEEEeCCeeCCCCCccEEEc-CCCcEEEEeeecCCCCCC-------------------------------cce
Q psy15128        161 VGSPPPHIRWYKNGNSLPPEDTRINVS-SSGSLQIDVLRDDFRAEP-------------------------------KDT  208 (292)
Q Consensus       161 ~~~p~~~~~W~~~~~~l~~~~~~~~~~-~~~~l~i~~~~~~d~g~~-------------------------------~~~  208 (292)
                      . .|.+.+.|+++|.++.... ++.+. .++.|.|.++..+|+|.|                               ...
T Consensus       492 ~-~~~~~i~W~~~g~~l~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~  569 (642)
T 1e07_A          492 E-AQNTTYLWWVNGQSLPVSP-RLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDS  569 (642)
T ss_pred             C-CCCcEEEEEECCEeCCCCC-cEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCce
Confidence            8 4788999999999987653 34333 356899999999999922                               345


Q ss_pred             EEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128        209 RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       209 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      .+.+|+.+.|.|.+ .|.|++.+.|+++|.++...                  ..|.|..+..+|+|.|+|.|.|.+|.+
T Consensus       570 ~v~~g~~~~l~C~~-~g~p~p~v~W~~~g~~i~~~------------------~~L~i~~~~~~d~G~Y~C~a~N~~G~~  630 (642)
T 1e07_A          570 SYLSGANLNLSCHS-ASNPSPQYSWRINGIPQQHT------------------QVLFIAKITPNNNGTYACFVSNLATGR  630 (642)
T ss_pred             eEEcCCcEEEEEEe-ccCCCCeEEEEECCEECccC------------------ceEEECcccccCCeEEEEEEEecccCc
Confidence            67789999999998 89999999999999987421                  157788899999999999999999998


Q ss_pred             ccC
Q psy15128        289 QHG  291 (292)
Q Consensus       289 ~~~  291 (292)
                      +.+
T Consensus       631 ~~s  633 (642)
T 1e07_A          631 NNS  633 (642)
T ss_pred             cee
Confidence            653

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=1.2e-38  Score=256.29  Aligned_cols=268  Identities=23%  Similarity=0.339  Sum_probs=195.5

Q ss_pred             CCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeC-CCccEEecCCcEEEEEEEe-eeCCCeeEEEECCeEEeeccC
Q psy15128          5 VKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVR-PQDQKVGLNGIASFQCVAE-GSPLPSVFWTQEGSQVLMFPG   82 (292)
Q Consensus         5 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~   82 (292)
                      ++.+|+|.|+|.|.|..|......+.|.+...+.+... .....+.+|+.+.|.|... +.|.+.+.|++++..+.    
T Consensus        70 ~~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~----  145 (384)
T 3kld_A           70 NKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSY----  145 (384)
T ss_dssp             CHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECC----
T ss_pred             CCcccCEEEEEEEEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCE----
Confidence            37789999999999998876655577777654443332 3446788999999999764 45678999999987653    


Q ss_pred             CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEE---EEEEEEe--ec-CCCCCeEEeCCCCceecCCCeEEE
Q psy15128         83 NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR---AFLQVTS--VE-DTPPPIVQVGPSNQTLPLHSVAFL  156 (292)
Q Consensus        83 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~---~~l~v~~--~~-~~~~~~~~~~~~~~~~~~g~~v~l  156 (292)
                      ....+......+.|.|.+++.+|+|.|+|.+.|..+.....   ..+.+..  .. ...+.+....+....+.+|+.+.|
T Consensus       146 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l  225 (384)
T 3kld_A          146 QDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKL  225 (384)
T ss_dssp             CSSSEEECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEE
T ss_pred             eeccEEEEcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEE
Confidence            11112222335679999999999999999999987654321   1122211  10 111222233455566889999999


Q ss_pred             EeEeccCCCCceEEEeC-CeeCCCCCccEEEcCCCcEEEEeeecCCCCC-----------------------------Cc
Q psy15128        157 PCQAVGSPPPHIRWYKN-GNSLPPEDTRINVSSSGSLQIDVLRDDFRAE-----------------------------PK  206 (292)
Q Consensus       157 ~C~~~~~p~~~~~W~~~-~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g~-----------------------------~~  206 (292)
                      .|.+.+.|.|.+.|+++ +..+..  ........+.|.|.++..+|+|.                             +.
T Consensus       226 ~C~~~g~P~p~i~W~k~~~~~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~  303 (384)
T 3kld_A          226 ECFALGNPVPTILWRRADGKPIAR--KARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIIN  303 (384)
T ss_dssp             EEEEEEESCCEEEEEETTCCCCCT--TCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCC
T ss_pred             EEEEeecCCCcEEEEeCCCccccc--cceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccCCC
Confidence            99999999999999995 445543  22223346689999999999992                             24


Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      ...+..|+.+.|.|.+ .|.|.|.|.|+++|.++.  ...++.+...         .|.|..+..+|+|.|+|.|.|.+|
T Consensus       304 ~~~v~~g~~v~l~C~~-~g~P~p~i~W~k~g~~l~--~~~~~~~~~~---------~L~i~~v~~~D~G~Y~C~A~N~~G  371 (384)
T 3kld_A          304 DIHVAMEESVFWECKA-NGRPKPTYRWLKNGDPLL--TRDRIQIEQG---------TLNITIVNLSDAGMYQCVAENKHG  371 (384)
T ss_dssp             CEEECTTCCEEEECEE-EEESCCEEEEEETTEECC--CBTTEEEETT---------EEEESSCCGGGCEEEEEEEEETTE
T ss_pred             ceEecCCCCEEEEeEC-CccCCCeEEEEECCEECC--CCccEEEeCC---------EEEEeecChhhCEEEEEEEEeCCc
Confidence            5667899999999998 899999999999999985  3344444322         688999999999999999999999


Q ss_pred             cccc
Q psy15128        287 QQQH  290 (292)
Q Consensus       287 ~~~~  290 (292)
                      ....
T Consensus       372 ~~~~  375 (384)
T 3kld_A          372 VIFS  375 (384)
T ss_dssp             EEEE
T ss_pred             eEEe
Confidence            8764

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=1.2e-37  Score=251.74  Aligned_cols=274  Identities=18%  Similarity=0.267  Sum_probs=197.4

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeC--CCcEEeCCCccEEecCCcEEEEEEE-eeeCCCeeEEEECCeEE-
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA--PPSFVVRPQDQKVGLNGIASFQCVA-EGSPLPSVFWTQEGSQV-   77 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~-   77 (292)
                      |.+++.+|+|.|+|.+.|..|......+.|.+..  .|.+  .+....+.+|+.+.|.|.+ .+.|.+.+.|++++... 
T Consensus        66 i~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~p~~--~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~  143 (395)
T 1bih_A           66 FLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPA--KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGAD  143 (395)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEECCCC--EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSC
T ss_pred             EecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEeecCCc--CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcC
Confidence            6789999999999999998777654446666543  3332  3345567789999999996 78899999999986211 


Q ss_pred             eec-cCCCcceeEEeeecEEEEccCCCCCCe---EEEEEEEeCCcCeeEEEEEEEEe-ecCCC-----CCeEEeCCCCce
Q psy15128         78 LMF-PGNAYGHLHVTQEGTLRIQGVQKEDAG---FFVCSALSVAGSTTVRAFLQVTS-VEDTP-----PPIVQVGPSNQT  147 (292)
Q Consensus        78 ~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g---~Y~C~~~~~~~~~~~~~~l~v~~-~~~~~-----~~~~~~~~~~~~  147 (292)
                      ... ......+.....++.|.|.+++.+|.|   .|+|.+.+..+............ .....     .....+.+....
T Consensus       144 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  223 (395)
T 1bih_A          144 PNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMM  223 (395)
T ss_dssp             GGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEE
T ss_pred             cccccccccccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCceecCCceE
Confidence            111 111123344455668999999999999   99999999887754433222211 11000     011112345677


Q ss_pred             ecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCC-ccEEEc--CC-CcEEEEeeecCCCCC-------------------
Q psy15128        148 LPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED-TRINVS--SS-GSLQIDVLRDDFRAE-------------------  204 (292)
Q Consensus       148 ~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~-~~~~~~--~~-~~l~i~~~~~~d~g~-------------------  204 (292)
                      +.+|+.+.|.|.+.+.|.+.+.|++++..+.... .++...  .. ..|.|.++..+|+|.                   
T Consensus       224 ~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l  303 (395)
T 1bih_A          224 AKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKL  303 (395)
T ss_dssp             EETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEE
T ss_pred             EECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEE
Confidence            8899999999999999999999999999886542 222211  12 269999999999982                   


Q ss_pred             -----------Ccc-eEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCcccccccccccccccccc
Q psy15128        205 -----------PKD-TRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 -----------~~~-~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                                 +.. ..+.+|+.+.|.|.+ .|.|.+.+.|+++|.++..   .++.+..+         .|.|..+..+
T Consensus       304 ~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~v~W~~~g~~~~~---~~~~~~~~---------~L~i~~~~~~  370 (395)
T 1bih_A          304 TVVSAPKYEQKPEKVIVVKQGQDVTIPCKV-TGLPAPNVVWSHNAKPLSG---GRATVTDS---------GLVIKGVKNG  370 (395)
T ss_dssp             EEEEEEEEEECCCSEEEECTTSCEEEECEE-EEESCCCCEEEETTEECCS---SSEEEETT---------EEEESSCCST
T ss_pred             EEEcCCccccCCCcceEecCCCeEEEEEEE-CcccCCeeEEEECCEECCC---CceEEECC---------EEEEeeCCcc
Confidence                       223 567899999999998 7999999999999998842   24444332         6889999999


Q ss_pred             ccceeEEEEeeccccccc
Q psy15128        273 SDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       273 ~~g~y~C~a~n~~g~~~~  290 (292)
                      |+|.|+|.|+|..|.++.
T Consensus       371 d~G~Y~C~a~N~~G~~~~  388 (395)
T 1bih_A          371 DKGYYGCRATNEHGDKYF  388 (395)
T ss_dssp             TCEEEEEEEEETTEEEEE
T ss_pred             cCEEEEEEEEccCCCceE
Confidence            999999999999998764

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=4.2e-37  Score=249.19  Aligned_cols=273  Identities=23%  Similarity=0.365  Sum_probs=202.4

Q ss_pred             ccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEe-CCCccEEecCCcEEEEEEE-eeeCCCeeEEEECCeEEeec
Q psy15128          3 TEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVV-RPQDQKVGLNGIASFQCVA-EGSPLPSVFWTQEGSQVLMF   80 (292)
Q Consensus         3 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~   80 (292)
                      .+++.+|+|.|+|.+.|..|...+..+.|.|..+|.+.. ......+.+|+.+.|.|.+ .+.|.+.+.|++++....  
T Consensus        82 ~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~--  159 (404)
T 3p3y_A           82 GGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPI--  159 (404)
T ss_dssp             TCCTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBC--
T ss_pred             CCCCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCcccc--
Confidence            378899999999999998887765558899988776543 3345788899999999998 678889999999875432  


Q ss_pred             cCCCcceeEEeeecEEEEccCCCCC-CeEEEEEEEeCCcCeeEE---EEEEEEeecC--CCCCeEEeCC---CCceecCC
Q psy15128         81 PGNAYGHLHVTQEGTLRIQGVQKED-AGFFVCSALSVAGSTTVR---AFLQVTSVED--TPPPIVQVGP---SNQTLPLH  151 (292)
Q Consensus        81 ~~~~~~~~~~~~~~~l~i~~~~~~d-~g~Y~C~~~~~~~~~~~~---~~l~v~~~~~--~~~~~~~~~~---~~~~~~~g  151 (292)
                        ....+.....++.|.|.++..+| .|.|+|.+.+..+.....   ..+.+.....  ..+|.+....   ....+.+|
T Consensus       160 --~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G  237 (404)
T 3p3y_A          160 --TQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRG  237 (404)
T ss_dssp             --CCCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETT
T ss_pred             --CCCCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecC
Confidence              11223344456789999999999 599999999877653222   3344332110  1112211111   12457899


Q ss_pred             CeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCC----------------------------
Q psy15128        152 SVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRA----------------------------  203 (292)
Q Consensus       152 ~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g----------------------------  203 (292)
                      +.+.|.|.+.+.|.+.+.|++++..+..... ......+.|.|.++..+|+|                            
T Consensus       238 ~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~  316 (404)
T 3p3y_A          238 MDLLLECIASGVPTPDIAWYKKGGDLPSDKA-KFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWL  316 (404)
T ss_dssp             SCEEEECCBCCSSCCEEEEEETTBCCCTTTE-EEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEE
T ss_pred             CCEEEEEEECCCCCCcEEEEECCEECCCCcc-cccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeee
Confidence            9999999999999999999999998876433 33344568999999999998                            


Q ss_pred             -CCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCc-eEEecCCCccccccccccccccccccccceeEEEE
Q psy15128        204 -EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK-RVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIA  281 (292)
Q Consensus       204 -~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a  281 (292)
                       .+....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+...... .....         ...|.|..+..+|+|.|+|.|
T Consensus       317 ~~~~~~~v~~g~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~a  386 (404)
T 3p3y_A          317 DEPKNLILAPGEDGRLVCRA-NGNPKPTVQWMVNGEPLQSAPPNPNREVA---------GDTIIFRDTQISSRAVYQCNT  386 (404)
T ss_dssp             ECCCCEEECTTCCEEEECEE-EEESCCEEEEEETTEEGGGSCCCTTEEEE---------TTEEEESSCCSSCCCEEEEEE
T ss_pred             ccCCcceeecCCcEEEEEEc-cccCCCceEEEECCEecCCCCCCceEEec---------CCEEEEeecCHHHCEEEEEEE
Confidence             2345677889999999998 89999999999999998643322 22221         126889999999999999999


Q ss_pred             eeccccccc
Q psy15128        282 KNIRNQQQH  290 (292)
Q Consensus       282 ~n~~g~~~~  290 (292)
                      .|..|.++.
T Consensus       387 ~N~~G~~~~  395 (404)
T 3p3y_A          387 SNEHGYLLA  395 (404)
T ss_dssp             EETTEEEEE
T ss_pred             EeCCCcEEE
Confidence            999998764

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=5e-36  Score=256.51  Aligned_cols=255  Identities=17%  Similarity=0.293  Sum_probs=198.9

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCC-cEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeec
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP-SFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMF   80 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~   80 (292)
                      |.+++.+|+|.|+|.+.|..+...+..+.|.|..+| ...+.+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.  
T Consensus       168 i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i~--  245 (642)
T 1e07_A          168 LFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQ--  245 (642)
T ss_pred             EeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCCCcEEecCCcccccCCEEEEEEEcCCCCCcEEEEEECCeEcc--
Confidence            678999999999999999887755555888888544 34455666778899999999999889999999999987652  


Q ss_pred             cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEe
Q psy15128         81 PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA  160 (292)
Q Consensus        81 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~  160 (292)
                                 ....|.|.+++.+|+|.|+|.+.|..+.......+.+.+....+.+.+.. +....+..|+.+.|.|.+
T Consensus       246 -----------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~-~~~~~~~~g~~v~l~C~~  313 (642)
T 1e07_A          246 -----------STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITS-NNSNPVEDEDAVALTCEP  313 (642)
T ss_pred             -----------cCCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEEc-CCceeEecCCcEEEEEEC
Confidence                       13569999999999999999999988776555444554443333444443 333445568889999999


Q ss_pred             ccCCCCceEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCCCC-------------------------------cceE
Q psy15128        161 VGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEP-------------------------------KDTR  209 (292)
Q Consensus       161 ~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g~~-------------------------------~~~~  209 (292)
                      .+.| +.+.|+++|..+............+.|.|.++..+|+|.|                               ....
T Consensus       314 ~~~p-~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~  392 (642)
T 1e07_A          314 EIQN-TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTY  392 (642)
T ss_pred             CCCC-ccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceE
Confidence            8875 7899999999887643222223456899999999999822                               2335


Q ss_pred             EeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccc
Q psy15128        210 VASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       210 ~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  289 (292)
                      +.+|+.+.|.|.+ .+.|.+.+.|+++|..+...                  ..|.|..+...|+|.|+|.|.|..|...
T Consensus       393 ~~~g~~~~l~C~~-~g~p~~~i~W~~~g~~~~~~------------------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  453 (642)
T 1e07_A          393 YRPGVNLSLSCHA-ASNPPAQYSWLIDGNIQQHT------------------QELFISNITEKNSGLYTCQANNSASGHS  453 (642)
T ss_pred             ecCCCcEEEEEEc-CccCCCeEEEEECCEEcCCC------------------ceEEEccCChhhCeEEEEEEEcCCCCCc
Confidence            6789999999998 89999999999999887411                  1477888999999999999999998765


Q ss_pred             c
Q psy15128        290 H  290 (292)
Q Consensus       290 ~  290 (292)
                      .
T Consensus       454 ~  454 (642)
T 1e07_A          454 R  454 (642)
T ss_pred             c
Confidence            4

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=5e-38  Score=253.34  Aligned_cols=271  Identities=20%  Similarity=0.293  Sum_probs=200.8

Q ss_pred             cccCCcCC------CeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCC---CeeEEEE
Q psy15128          2 ITEVKKSD------EGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPL---PSVFWTQ   72 (292)
Q Consensus         2 i~~v~~~D------~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~v~W~~   72 (292)
                      |.+++.+|      +|.|+|.+.|..|...+..+.|.+..+|.+...+....+.+|+.++|.|.+.+.+.   +.+.|++
T Consensus        63 i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~  142 (388)
T 2v5m_A           63 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHT  142 (388)
T ss_dssp             ECCCCGGGCCHHHHEEEEEEEEEETTEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEE
T ss_pred             ecccChhhccccccCceEEEEEEccCCeEEecceEEEEccccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEe
Confidence            66788887      99999999998887655558888888888777777788999999999999987643   6899999


Q ss_pred             CCeEEeeccCCCcceeEEeeecEEEEccCCCCCC-eEEEEEEEeCCcCeeE-E---EEEEEEeecCCCCCeE-EeCCCCc
Q psy15128         73 EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDA-GFFVCSALSVAGSTTV-R---AFLQVTSVEDTPPPIV-QVGPSNQ  146 (292)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~-g~Y~C~~~~~~~~~~~-~---~~l~v~~~~~~~~~~~-~~~~~~~  146 (292)
                      ++..+.........+.....++.|.|.+++.+|. |.|+|.+.+..+.... .   ..+.+........|.+ .......
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~  222 (388)
T 2v5m_A          143 DEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPL  222 (388)
T ss_dssp             TTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCE
T ss_pred             CCCcccccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCce
Confidence            9877643322223344455567899999999999 9999999987543322 1   2344432110001111 1122334


Q ss_pred             eecCCCeEEEEeEeccCCCCceEEEeCCeeCCC-----CCccEEEcCCCcEEEEeeecCCCCC-----------------
Q psy15128        147 TLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP-----EDTRINVSSSGSLQIDVLRDDFRAE-----------------  204 (292)
Q Consensus       147 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~-----~~~~~~~~~~~~l~i~~~~~~d~g~-----------------  204 (292)
                      .+.+|+.+.|.|.+.+.|.+.+.|++++..+..     ...++. ...+.|.|.++..+|+|.                 
T Consensus       223 ~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  301 (388)
T 2v5m_A          223 ELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVK-QVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV  301 (388)
T ss_dssp             EEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEE-EETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             EEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCcee-cccCEEEECcCCHHHCeEEEEEEecCCCceeEEEE
Confidence            578899999999999999999999997543321     112222 235689999999999982                 


Q ss_pred             ------------CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCcccccccccccccccccc
Q psy15128        205 ------------PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ------------~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                                  +....+.+|+.+.|.|.+ .+.|.+.|.|+++|..+...                 ...|.|..+..+
T Consensus       302 l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~i~~~-----------------~~~L~i~~v~~~  363 (388)
T 2v5m_A          302 LTVTAPLSAKIDPPTQTVDFGRPAVFTCQY-TGNPIKTVSWMKDGKAIGHS-----------------ESVLRIESVKKE  363 (388)
T ss_dssp             EEEEEEEEEEEESSEEEECTTSCEEEEEEE-EEECCCEEEEEETTEECSCC-----------------SSEEEESSCCGG
T ss_pred             EEEeCCCccccCCCcEEecCCCCEEEEEEe-ccccCCeEEEEECCEECccC-----------------CCEEEEecCChh
Confidence                        245567899999999998 89999999999999988421                 125888999999


Q ss_pred             ccceeEEEEeecccccccC
Q psy15128        273 SDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       273 ~~g~y~C~a~n~~g~~~~~  291 (292)
                      |+|.|+|.|+|..|+++.+
T Consensus       364 d~G~Y~C~a~N~~G~~~~~  382 (388)
T 2v5m_A          364 DKGMYQCFVRNDRESAEAS  382 (388)
T ss_dssp             GCEEEEEEEECSSCEEEEE
T ss_pred             hCEEEEEEEEcCCCcEEEE
Confidence            9999999999999988653

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=2.3e-37  Score=248.97  Aligned_cols=271  Identities=23%  Similarity=0.310  Sum_probs=198.3

Q ss_pred             cccCCc-CCCeeEEEEEEecccccccccEEEEEeCCCcEEe-CCCccEEecCCcEEEEEEE-eeeCCCeeEEEECCeEEe
Q psy15128          2 ITEVKK-SDEGKYQCYVQNMVGERETKPALLTVHAPPSFVV-RPQDQKVGLNGIASFQCVA-EGSPLPSVFWTQEGSQVL   78 (292)
Q Consensus         2 i~~v~~-~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~   78 (292)
                      |.++.. +|+|.|+|.+.|..|......+.|.|...|.+.. .+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.
T Consensus        65 i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~  144 (382)
T 1cs6_A           65 ISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNF  144 (382)
T ss_dssp             EESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCB
T ss_pred             EecccccccCEEEEEEEEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccc
Confidence            566776 9999999999998887655557888876555443 3456778999999999985 456888999999886542


Q ss_pred             eccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEE-----EEEEEEeec-CCCCCeEEe-CCCCceecCC
Q psy15128         79 MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR-----AFLQVTSVE-DTPPPIVQV-GPSNQTLPLH  151 (292)
Q Consensus        79 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~-----~~l~v~~~~-~~~~~~~~~-~~~~~~~~~g  151 (292)
                      ....  .........+.|.|.+++.+|+|.|+|.+.+..+.....     ..+.+.... ...+|.+.. .+....+.+|
T Consensus       145 ~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G  222 (382)
T 1cs6_A          145 IPAD--GRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTG  222 (382)
T ss_dssp             CCCC--SSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETT
T ss_pred             cccC--ceEEEecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCC
Confidence            2111  111112234689999999999999999999876433222     233332110 111233333 3456678899


Q ss_pred             CeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCCC---------------------------
Q psy15128        152 SVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAE---------------------------  204 (292)
Q Consensus       152 ~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g~---------------------------  204 (292)
                      +.+.|.|.+.+.|.+.+.|++++..+...    .......|.|.++..+|+|.                           
T Consensus       223 ~~v~l~C~~~g~p~~~i~W~~~~~~~~~~----~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~  298 (382)
T 1cs6_A          223 QMVTLECFAFGNPVPQIKWRKLDGSQTSK----WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWL  298 (382)
T ss_dssp             CCEEEECEEEEESCCEEEEEECCSCCSCC----CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEE
T ss_pred             CeEEEEEEEccCCCCEEEEEECCcccccE----EecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcc
Confidence            99999999999999999999988776531    12245578898898888882                           


Q ss_pred             --CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128        205 --PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK  282 (292)
Q Consensus       205 --~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~  282 (292)
                        +....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+.  ...++.....         .|.|..+..+|+|.|+|.|+
T Consensus       299 ~~~~~~~~~~g~~~~l~C~~-~g~p~p~v~W~~~g~~~~--~~~~~~~~~~---------~L~i~~v~~~d~G~Y~C~a~  366 (382)
T 1cs6_A          299 DVITDTEADIGSDLRWSCVA-SGKPRPAVRWLRDGQPLA--SQNRIEVSGG---------ELRFSKLVLEDSGMYQCVAE  366 (382)
T ss_dssp             ECCCCEEEETTCCEEEECEE-EEESCCEEEEEETTEECC--CCSSEEEETT---------EEEESSCCGGGCEEEEEEEE
T ss_pred             cCCCccEEcCCCeEEEEEEe-eeecCCEEEEEECCEECC--CCceEEEECC---------EEEECcCCcccCEEEEEEEE
Confidence              245567899999999998 899999999999999885  3344443322         68899999999999999999


Q ss_pred             eccccccc
Q psy15128        283 NIRNQQQH  290 (292)
Q Consensus       283 n~~g~~~~  290 (292)
                      |..|....
T Consensus       367 N~~G~~~~  374 (382)
T 1cs6_A          367 NKHGTVYA  374 (382)
T ss_dssp             ETTEEEEE
T ss_pred             eCCCeEEE
Confidence            99998764

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=2.1e-35  Score=228.11  Aligned_cols=241  Identities=22%  Similarity=0.380  Sum_probs=184.9

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      .+|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+..  ..............|.|.+++.+|+|.|+|.+.
T Consensus         4 ~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   81 (284)
T 2rik_A            4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRP--GGNYKMTLVENTATLTVLKVTKGDAGQYTCYAS   81 (284)
T ss_dssp             CCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCS--SSSEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcC--CCcEEEEEcCCEEEEEEecCCcccCEEEEEEEE
Confidence            578888888889999999999999999988889999999987632  111111112234689999999999999999999


Q ss_pred             eCCcCeeEEEEEEEEeecCCCCCeEEeC-CCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCcc-EEE-cCCCc
Q psy15128        115 SVAGSTTVRAFLQVTSVEDTPPPIVQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTR-INV-SSSGS  191 (292)
Q Consensus       115 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~-~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~-~~~-~~~~~  191 (292)
                      |..+.......|.|..     +|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+...... ... .....
T Consensus        82 n~~g~~~~~~~l~V~~-----~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  156 (284)
T 2rik_A           82 NVAGKDSCSAQLGVQE-----PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV  156 (284)
T ss_dssp             ETTEEEEEEEEEEEEC-----CCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEE
T ss_pred             ECCceEEEEEEEEccC-----CCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEE
Confidence            9888776667777653     3444333 34455789999999999999999999999999988765321 111 22346


Q ss_pred             EEEEeeecCCCC-----------------------------CCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEecc
Q psy15128        192 LQIDVLRDDFRA-----------------------------EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDL  242 (292)
Q Consensus       192 l~i~~~~~~d~g-----------------------------~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~  242 (292)
                      |.|.++..+|+|                             .+....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+..
T Consensus       157 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~v~W~~~~~~~~~  235 (284)
T 2rik_A          157 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECEL-QGTPPFQVSWHKDKRELRS  235 (284)
T ss_dssp             EEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEEC-BSSSCCEEEEEETTEEECB
T ss_pred             EEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEE-EecCCCEEEEEECCEECcC
Confidence            888899988888                             2244577899999999998 8999999999999999864


Q ss_pred             CCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        243 ESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      ..  ++.+..++     ....|.|..+..+|+|.|+|.|+|..|+++.
T Consensus       236 ~~--~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  276 (284)
T 2rik_A          236 GK--KYKIMSEN-----FLTSIHILNVDSADIGEYQCKASNDVGSYTC  276 (284)
T ss_dssp             TT--TEEEEEET-----TEEEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CC--CEEEEEcC-----CEEEEEEcCCCcccCEEEEEEEEeCCCceeE
Confidence            33  33322221     1236889999999999999999999998764

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=8.5e-37  Score=247.51  Aligned_cols=264  Identities=13%  Similarity=0.135  Sum_probs=172.1

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeecc
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFP   81 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~   81 (292)
                      |.+++.+|+|.|+|.+.|..+..... +.|.|..+|.+.. ..+..+..|+.+.|.|.+.|.|.|.|.|++++.......
T Consensus       107 I~~v~~~D~G~Y~C~a~N~~g~~~~~-~~l~V~~~p~~~~-~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~  184 (423)
T 3qs7_E          107 ILKMTETQAGEYLLFIQSEATNYTIL-FTVSIRNTLLYTL-RRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCK  184 (423)
T ss_dssp             ESSCCSSSCSEEEEEEEC--CEEEEE-EEEEEC-----CE-EEEEEEECSSSSCEEEEEEESSCCEEEEEEC--------
T ss_pred             EeecCcccCEEEEEEEEcCCCcEEEE-EEEEEecCccccc-cCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCcccc
Confidence            67999999999999999998876655 8888886665421 122335568888999999999999999999876442110


Q ss_pred             CCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEec
Q psy15128         82 GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAV  161 (292)
Q Consensus        82 ~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~  161 (292)
                      ....... ......|     ...|+|.|+|.|.|..|.... ..+.+.+..   ++..  .+....+.+|+.+.|.|.+.
T Consensus       185 ~~~~~~~-~~~~~~l-----~~~d~G~Y~C~A~N~~G~~~~-~~~~l~V~~---~p~~--~~~~~~v~~G~~v~L~C~~~  252 (423)
T 3qs7_E          185 EESPAVV-KKEEKVL-----HELFGTDIRCCARNELGRECT-RLFTIDLNQ---TPQT--TLPQLFLKVGEPLWIRCKAV  252 (423)
T ss_dssp             -----CE-EECCSEE-----CCCCSSCEEEEEECSSCEEEE-ECEEEESSS---CCCS--STTEEEEETTSCEEEEEEEE
T ss_pred             ccccccc-cccceEE-----ecccCeEEEEEEEcCCCCcce-eeEEEEEec---CCcc--CCCceEEeCCCeEEEEEEEE
Confidence            0000000 0111112     578999999999998876543 223333211   1111  33456688999999999998


Q ss_pred             c-CCCCceEEEeCCeeCCCCCcc--EE------EcCCCcEEEEeeecCCCCCC---------------------------
Q psy15128        162 G-SPPPHIRWYKNGNSLPPEDTR--IN------VSSSGSLQIDVLRDDFRAEP---------------------------  205 (292)
Q Consensus       162 ~-~p~~~~~W~~~~~~l~~~~~~--~~------~~~~~~l~i~~~~~~d~g~~---------------------------  205 (292)
                      + .|.+.+.|++++..+......  ..      ....+.|.|.++..+|+|.|                           
T Consensus       253 g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~~~~~~L~V~~~p~i~~~~~  332 (423)
T 3qs7_E          253 HVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNS  332 (423)
T ss_dssp             ESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTEEEEEEEEEEESSCEEEEC--
T ss_pred             cCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecCCCceEEEEEEeCCcceEcCC
Confidence            8 577899999999887553110  01      11224699999999999922                           


Q ss_pred             -cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        206 -KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       206 -~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                       ....+.+|+.+.|.|.+ .|.|.|.|.|+|+|+.|......  .  .+..       .+.+......|+|.|+|.|+|.
T Consensus       333 ~~~~~v~~G~~v~l~C~~-~g~P~p~i~W~k~g~~l~~~~~~--~--~~~~-------~~~~~~~~~~D~G~YtC~A~N~  400 (423)
T 3qs7_E          333 SEDYEIDQYEEFCFSVRF-KAYPQIRCTWTFSRKSFPCEQKG--L--DNGY-------SISKFCNHKHQPGEYIFHAEND  400 (423)
T ss_dssp             -CEECCCTTCCCCEEEEE-EEESCCEEEEEETTEEEECBCCB--C--SSSS-------EEEEECCCTTCCSCEEEEEEET
T ss_pred             CccEEecCCCeEEEEEEE-EEcCCCeEEEEECCEECCCcccc--c--cCCc-------EEEEEecccccCEEEEEEEEcC
Confidence             23456689999999998 89999999999999998632210  0  0000       0111234457999999999999


Q ss_pred             ccccccC
Q psy15128        285 RNQQQHG  291 (292)
Q Consensus       285 ~g~~~~~  291 (292)
                      .|+++.+
T Consensus       401 ~G~~~~s  407 (423)
T 3qs7_E          401 DAQFTKM  407 (423)
T ss_dssp             TEEEEEE
T ss_pred             CceEEEE
Confidence            9998753

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=1.1e-36  Score=254.74  Aligned_cols=277  Identities=18%  Similarity=0.174  Sum_probs=187.4

Q ss_pred             cccCCcCCCe-eEEEEEEecccccccccEEEEEe----CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCe-eEEEECCe
Q psy15128          2 ITEVKKSDEG-KYQCYVQNMVGERETKPALLTVH----APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPS-VFWTQEGS   75 (292)
Q Consensus         2 i~~v~~~D~G-~Y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-v~W~~~~~   75 (292)
                      |.+++.+|+| .|+|.+.+..+...+..+.|.|.    .+|.+...+....+.+|+.+.|.|.+.+.|.+. +.|++++.
T Consensus       172 i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~  251 (524)
T 2ec8_A          172 IKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENS  251 (524)
T ss_dssp             EESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTC
T ss_pred             EeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCC
Confidence            6789999999 99999999877665645888886    678888888888899999999999999988776 99999987


Q ss_pred             EE--eeccCCC-cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCC---CCceec
Q psy15128         76 QV--LMFPGNA-YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGP---SNQTLP  149 (292)
Q Consensus        76 ~~--~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~---~~~~~~  149 (292)
                      .+  ....... .........+.|.|.+++.+|+|.|+|.+.|..|.......|.|..     +|.+...+   ....+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~-----~p~~~~~~~~~~~~~v~  326 (524)
T 2ec8_A          252 QTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVD-----KGFINIFPMINTTVFVN  326 (524)
T ss_dssp             SCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEES-----SCEEEEEESSCSEEEEC
T ss_pred             CCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEec-----cCceEeecCCCceEEEc
Confidence            63  1110000 0000233456899999999999999999999888877777777653     34444332   356788


Q ss_pred             CCCeEEEEeEeccCCCCc-eEEEeCCeeCCCCCccEEEcCC-------CcEEEEeeecCCCCCCcc--------------
Q psy15128        150 LHSVAFLPCQAVGSPPPH-IRWYKNGNSLPPEDTRINVSSS-------GSLQIDVLRDDFRAEPKD--------------  207 (292)
Q Consensus       150 ~g~~v~l~C~~~~~p~~~-~~W~~~~~~l~~~~~~~~~~~~-------~~l~i~~~~~~d~g~~~~--------------  207 (292)
                      +|+.+.|.|.+.+.|.|. +.|++++.++.....++....+       ..|.|.++..+|+|.|..              
T Consensus       327 ~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  406 (524)
T 2ec8_A          327 DGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFN  406 (524)
T ss_dssp             TTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             CCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEE
Confidence            999999999999999999 9999999988765433333322       379999999999994310              


Q ss_pred             --------e----EEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccC-------CCce--EEecCCCcccccccccccc
Q psy15128        208 --------T----RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLE-------SSKR--VSILGDPWFDSRRSRSIFG  266 (292)
Q Consensus       208 --------~----~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~-------~~~~--~~~~~~~~~~~~~~~~l~i  266 (292)
                              .    ...+|   .|.|.+ .|.|.|.+.|++++..+...       +...  .....++....    ...+
T Consensus       407 l~V~~~P~i~~~~~~~~g---~l~C~~-~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~s~l  478 (524)
T 2ec8_A          407 VYVNTKPEILTYDRLVNG---MLQCVA-AGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVV----QSSI  478 (524)
T ss_dssp             EEECEEEEEEEEECCSSS---CEEEEE-EEESCCEEECCCC----------CCCCCCCCCCC-CCSSSCEEE----EEEE
T ss_pred             EEEecCCeEeecccCcCc---EEEEEE-EeecCCEEEEEECCCcccccccccCCCCceeeeeccCCCCcceE----EEEE
Confidence                    0    11234   899998 89999999999997765210       0000  11111111000    0113


Q ss_pred             ccccccccceeEEEEeecccccccC
Q psy15128        267 SVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       267 ~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      .....+|+|.|+|.|+|.+|.++.+
T Consensus       479 ~~~~~~d~G~Y~C~a~N~~G~~~~~  503 (524)
T 2ec8_A          479 DSSAFKHNGTVECKAYNDVGKTSAY  503 (524)
T ss_dssp             CCCSCCC-----CEEECSSCEEECC
T ss_pred             EEEEccCCEEEEEEEEcCCCceEEE
Confidence            3344589999999999999998654

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=1.7e-35  Score=247.47  Aligned_cols=283  Identities=15%  Similarity=0.139  Sum_probs=191.4

Q ss_pred             cccCCcCCCeeEEEEEEeccccc--ccccEEEEE----eCCCcEEeCCCccEEecCCcEEEEEEEeeeCCC--eeEEEEC
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGER--ETKPALLTV----HAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLP--SVFWTQE   73 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~--~~~~~~l~v----~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~v~W~~~   73 (292)
                      |.+++.+|+|.|+|.+.+..+..  ....+.|.|    ..+|.+...+....+.+|+.++|.|.+.+.|++  .+.|+++
T Consensus        74 I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~  153 (523)
T 2rcj_C           74 ISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKAD  153 (523)
T ss_pred             ECCCChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecC
Confidence            78999999999999999876532  223378888    356767666766677789999999999987654  8999999


Q ss_pred             CeEEeeccCC----CcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceec
Q psy15128         74 GSQVLMFPGN----AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLP  149 (292)
Q Consensus        74 ~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~  149 (292)
                      +..+......    ..........+.|.|.++..+|+|.|+|.+.|..+.......+.+... ...+|.+...+....+.
T Consensus       154 g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~-~~~~P~v~~~~~~~~~~  232 (523)
T 2rcj_C          154 GSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSA-STKGPSVFPLAPSSKST  232 (523)
T ss_pred             CCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCC-CCcCCEEEecCCCcccc
Confidence            8765311100    000111122347999999999999999999998776554444322111 12234444333344567


Q ss_pred             CCCeEEEEeEeccC-CCC-ceEEEeCCeeCCCCCccEEEcCCC------cEEEEeeecCCCCCC----------------
Q psy15128        150 LHSVAFLPCQAVGS-PPP-HIRWYKNGNSLPPEDTRINVSSSG------SLQIDVLRDDFRAEP----------------  205 (292)
Q Consensus       150 ~g~~v~l~C~~~~~-p~~-~~~W~~~~~~l~~~~~~~~~~~~~------~l~i~~~~~~d~g~~----------------  205 (292)
                      +|+.+.|.|.+.+. |.| .+.|++++..+...........++      .|.|.++..+| |.|                
T Consensus       233 ~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~  311 (523)
T 2rcj_C          233 SGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKR  311 (523)
T ss_pred             cCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEe
Confidence            99999999999886 767 899999998754311111111222      68888888888 822                


Q ss_pred             --------------cce-EEeCCCceEEEeeCCCCCCC----CeEEEeEcCeEeccCCCceEEecCCCcccccccccccc
Q psy15128        206 --------------KDT-RVASGETALLECGPPKGQPE----PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFG  266 (292)
Q Consensus       206 --------------~~~-~~~~g~~~~l~C~~~~~~p~----~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i  266 (292)
                                    ... .+.+|+.+.|.|.+ .|.|+    +.|.|+++|.++............++.+.  ....|.|
T Consensus       312 l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~-~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~--~~s~L~i  388 (523)
T 2rcj_C          312 VEPLSLPSVFLFPPKPKDTLMISRTPEVTCVV-VDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYR--VVSVLTV  388 (523)
T ss_pred             cCCCcCceEEecCCCchhhcccCCceEEEEEE-ecccCCCCceEEEEEECCeEccCCccCCceecCCCcEE--EEEEEEE
Confidence                          111 15679999999998 66543    59999999999864332222222333222  2235778


Q ss_pred             ccccccccceeEEEEeecccccc
Q psy15128        267 SVLGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       267 ~~~~~~~~g~y~C~a~n~~g~~~  289 (292)
                      ..+..+|+|.|+|.|.|..|...
T Consensus       389 ~~~~~~d~G~Y~C~a~n~~~~~~  411 (523)
T 2rcj_C          389 LHQNWLDGKEYKCKVSNKALPAP  411 (523)
T ss_pred             CHHHhcCCCeEEEEEeCCCCCCc
Confidence            88999999999999999887754

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=5.9e-36  Score=248.64  Aligned_cols=274  Identities=12%  Similarity=0.093  Sum_probs=181.3

Q ss_pred             cCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEe-eeCCCeeEEEECCeEEeeccC
Q psy15128          4 EVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE-GSPLPSVFWTQEGSQVLMFPG   82 (292)
Q Consensus         4 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~   82 (292)
                      .++.+|+|.|+|.|.|..|......+.|.|..+|.+  .+....+.+|+.+.|.|.+. +.|.+.+.|++++..+.....
T Consensus       197 ~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~  274 (527)
T 3qs9_E          197 VLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNY  274 (527)
T ss_dssp             EECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGE
T ss_pred             eccccCCEEEEEEEEeCCCcccceEEEEEEeccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCce
Confidence            456789999999999998887665588888877765  55577888999999999996 789999999999875421100


Q ss_pred             CCc----ceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCC--CCceecCCCeEEE
Q psy15128         83 NAY----GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGP--SNQTLPLHSVAFL  156 (292)
Q Consensus        83 ~~~----~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~--~~~~~~~g~~v~l  156 (292)
                      ...    ..........|.|.+++.+|+|.|+|.+.|.   ....+.|.|..     ++.+...+  ....+.+|+.+.|
T Consensus       275 ~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~-----~p~i~~~~~~~~~~v~~G~~v~L  346 (527)
T 3qs9_E          275 FEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVE-----KGFINATNSSEDYEIDQYEEFCF  346 (527)
T ss_dssp             EEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC-------CEEECCCSCCEECCCTTCCCCE
T ss_pred             eeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEc-----cCccccccCcccEEEcCCCeEEE
Confidence            000    0011223457999999999999999999887   44455555542     34444433  2345678999999


Q ss_pred             EeEeccCCCCceEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCCCC----------------------cceEEeCCC
Q psy15128        157 PCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEP----------------------KDTRVASGE  214 (292)
Q Consensus       157 ~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g~~----------------------~~~~~~~g~  214 (292)
                      .|.+.++|.|.+.|+|+|.++......  ......|.|.++..+|+|.|                      +.... ...
T Consensus       347 ~C~~~g~P~p~i~W~k~g~~l~~~~~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i~~-~~~  423 (527)
T 3qs9_E          347 SVRFKAYPQIRCTWTFSRKSFPCEQKG--LDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLA-EAS  423 (527)
T ss_dssp             EEEEEEESCCEEEEEETTEEEECBCCB--CSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEEEE-CCC
T ss_pred             EEEEEecCCCEEEEEECCEECcCCccc--ccCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeEEE-eCC
Confidence            999999999999999999988654321  22456899999999999944                      22222 223


Q ss_pred             ceEEEeeCCCCCCCCeEEEeEcCeEeccCCCce----EEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        215 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKR----VSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       215 ~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      ...|.|.+ .|.|.|.|.|++++..........    ................+.+......|+|.|+|.|.|.+|++++
T Consensus       424 ~~~l~C~a-~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C~A~N~~G~~~~  502 (527)
T 3qs9_E          424 ASQASCFS-DGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCE  502 (527)
T ss_dssp             CE---EEE-ECSSCCEEEEECCC-----CCCCCCCCEEEC---------CEEEEECCCCCSSCSCEEEEEEECSSCEEEE
T ss_pred             CCEEEEEE-EEEcCCeEEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEEcCCCEEEEEEEEeCCCCcee
Confidence            45789998 899999999998765442111100    0000000000000111223333356999999999999999875


Q ss_pred             C
Q psy15128        291 G  291 (292)
Q Consensus       291 ~  291 (292)
                      +
T Consensus       503 ~  503 (527)
T 3qs9_E          503 T  503 (527)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=2e-35  Score=259.13  Aligned_cols=273  Identities=25%  Similarity=0.418  Sum_probs=206.8

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEe---CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEe
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH---APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVL   78 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~   78 (292)
                      |.+++.+|+|.|+|.+.|..+..... +.|.|.   .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.
T Consensus       393 i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~  471 (816)
T 3dmk_A          393 IESVKKEDKGMYQCFVRNDRESAEAS-AELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIA  471 (816)
T ss_dssp             ESSCCGGGCEEEEEEEECSSCEEEEC-CEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECC
T ss_pred             EcCCCHHHCEEEEEEEECCCCcEEEE-EEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECC
Confidence            68899999999999999988766555 677773   56777776777788999999999999999999999999998763


Q ss_pred             eccCCCcceeE-E----eeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCe
Q psy15128         79 MFPGNAYGHLH-V----TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSV  153 (292)
Q Consensus        79 ~~~~~~~~~~~-~----~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~  153 (292)
                      ..  ....... .    .....|.|.++..+|+|.|+|.+.|..|.......|.|..     +|.+ ..+....+..|+.
T Consensus       472 ~~--~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-----~p~~-~~~~~~~v~~G~~  543 (816)
T 3dmk_A          472 NN--DRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG-----LPYI-RQMEKKAIVAGET  543 (816)
T ss_dssp             SC--TTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECS-----SCEE-CCCCCEEEETTCC
T ss_pred             CC--CCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEec-----CCee-EccCCeEEecCCe
Confidence            21  1110000 0    1123699999999999999999999988877777777653     3333 3445566889999


Q ss_pred             EEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCCCcEEEEeee-cCCCCCC---------------------------
Q psy15128        154 AFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLR-DDFRAEP---------------------------  205 (292)
Q Consensus       154 v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~-~~d~g~~---------------------------  205 (292)
                      +.|.|.+.+.|.+.+.|++++..+... .+.....+++|.|.++. .+|+|.|                           
T Consensus       544 v~l~C~~~g~p~~~i~W~k~~~~l~~~-~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~  622 (816)
T 3dmk_A          544 LIVTCPVAGYPIDSIVWERDNRALPIN-RKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRII  622 (816)
T ss_dssp             EEEECCEECSSEEEEEEEETTEESCCS-TTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCB
T ss_pred             EEEEEEecCCCCCEEEEEECCeEcccC-CceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCccc
Confidence            999999999988899999999998764 45556677788888887 4677711                           


Q ss_pred             ----cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEE
Q psy15128        206 ----KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIA  281 (292)
Q Consensus       206 ----~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a  281 (292)
                          ....+.+|+.+.|.|.+..+.+++.+.|+++|+.+.............      ....|.|..+...|+|.|+|.|
T Consensus       623 ~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~a  696 (816)
T 3dmk_A          623 PFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGR------RGSVLTIEAVEASHAGNFTCHA  696 (816)
T ss_dssp             CCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETT------TEEEEEEESCCGGGCEEEEEEE
T ss_pred             cccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCC------CeeEEEEccCChhhCEEEEEEE
Confidence                334577899999999984455556999999999885322222221111      2236889999999999999999


Q ss_pred             eeccccccc
Q psy15128        282 KNIRNQQQH  290 (292)
Q Consensus       282 ~n~~g~~~~  290 (292)
                      .|..|..+.
T Consensus       697 ~N~~g~~~~  705 (816)
T 3dmk_A          697 RNLAGHQQF  705 (816)
T ss_dssp             ECSSCEEEE
T ss_pred             EeCCccEEE
Confidence            999998764

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=3.2e-36  Score=251.87  Aligned_cols=275  Identities=13%  Similarity=0.137  Sum_probs=203.2

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEE-CCeEEeec
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQ-EGSQVLMF   80 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~-~~~~~~~~   80 (292)
                      |.+++.+|+|.|+|.+.+  |.  ...+.|.|..+|.+...+....+.+|+.+.|.|.+.+.+.+.+.|++ ++..+.  
T Consensus        84 I~~~~~~D~G~Y~C~a~n--g~--~~~~~l~V~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~--  157 (524)
T 2ec8_A           84 TEKAEATNTGKYTCTNKH--GL--SNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLP--  157 (524)
T ss_dssp             ESSCCSTTCEEEEEEETT--SC--EEEEEEECCCSSCSBCCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCC--
T ss_pred             EcccchhhCEEEEEeecC--Cc--ceEEEEEECCCCcccccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcC--
Confidence            789999999999999988  32  34488888877766667777889999999999999887768999998 665442  


Q ss_pred             cCCCcceeEEeeecEEEEccCCCCCCe-EEEEEEEeCCcCee-EEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEe
Q psy15128         81 PGNAYGHLHVTQEGTLRIQGVQKEDAG-FFVCSALSVAGSTT-VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPC  158 (292)
Q Consensus        81 ~~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C  158 (292)
                         ...+......+.|.|.+++.+|+| .|+|.+.+..+... ....|.|.. ....+|.+...+....+.+|+.+.|.|
T Consensus       158 ---~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~-~~~~~p~i~~~~~~~~v~~G~~v~L~C  233 (524)
T 2ec8_A          158 ---KDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRP-AFKAVPVVSVSKASYLLREGEEFTVTC  233 (524)
T ss_dssp             ---SSCEEEEETTTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEEC-CCCSCCEEECSCSEEEEETTSCEEEEE
T ss_pred             ---CCCceeECCCccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEe-CCCCCCcEEecCCcceEEcCCcEEEEE
Confidence               122344455678999999999999 99999998755442 245555542 112466777777777889999999999


Q ss_pred             EeccCCCCc-eEEEeCCeeC--CCCCccEEE------cCCCcEEEEeeecCCCCCC------------------------
Q psy15128        159 QAVGSPPPH-IRWYKNGNSL--PPEDTRINV------SSSGSLQIDVLRDDFRAEP------------------------  205 (292)
Q Consensus       159 ~~~~~p~~~-~~W~~~~~~l--~~~~~~~~~------~~~~~l~i~~~~~~d~g~~------------------------  205 (292)
                      .+.+.|.+. +.|++++..+  ... .....      ...+.|.|.++..+|+|.|                        
T Consensus       234 ~~~g~p~p~~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  312 (524)
T 2ec8_A          234 TIKDVSSSVYSTWKRENSQTKLQEK-YNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGF  312 (524)
T ss_dssp             EEEESSTTCEEEEEETTCSCCCCEE-EEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCE
T ss_pred             EEecCCCcEEEEEEeCCCCCccccc-cccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCc
Confidence            999988887 9999999874  221 11111      2235799999999999922                        


Q ss_pred             --------cceEEeCCCceEEEeeCCCCCCCCe-EEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccce
Q psy15128        206 --------KDTRVASGETALLECGPPKGQPEPT-LHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQ  276 (292)
Q Consensus       206 --------~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~  276 (292)
                              ....+.+|+.+.|.|.+ .+.|.+. +.|+++|.++..... ++....++.. ......|.|..+..+|+|.
T Consensus       313 ~~~~~~~~~~~~v~~G~~v~l~C~~-~g~P~p~~v~W~k~g~~~~~~~~-~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~  389 (524)
T 2ec8_A          313 INIFPMINTTVFVNDGENVDLIVEY-EAFPKPEHQQWIYMNRTFTDKWE-DYPKSENESN-IRYVSELHLTRLKGTEGGT  389 (524)
T ss_dssp             EEEEESSCSEEEECTTCCEEEEEEE-EEESCCCEEEEESSSCBCSSSBC-CEESCCSSSC-CEEEEEEEECSCCGGGCEE
T ss_pred             eEeecCCCceEEEcCCCcEEEEEEE-eecCCCcEEEEEECCeeccCCcc-ceeEEccCCC-ceeEEEEEEeecCcccCeE
Confidence                    24678899999999998 8999998 999999998863332 2322222110 1123468999999999999


Q ss_pred             eEEEEeeccccccc
Q psy15128        277 WKLIAKNIRNQQQH  290 (292)
Q Consensus       277 y~C~a~n~~g~~~~  290 (292)
                      |+|.|.|..|..+.
T Consensus       390 Y~C~a~N~~g~~~~  403 (524)
T 2ec8_A          390 YTFLVSNSDVNAAI  403 (524)
T ss_dssp             EEEEEECSSCEEEE
T ss_pred             EEEEEEecCceEEE
Confidence            99999999998654

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=4.3e-35  Score=257.05  Aligned_cols=260  Identities=27%  Similarity=0.505  Sum_probs=208.4

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeecc
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFP   81 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~   81 (292)
                      |.+++.+|+|.|+|.+.|..+..... +.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.   
T Consensus       310 i~~v~~~D~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~---  385 (816)
T 3dmk_A          310 IKDAVVEDSGKYLCVVNNSVGGESVE-TVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG---  385 (816)
T ss_dssp             ECSCCGGGCEEEEEEEECSSCEEEEE-EEEEECEEEEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECS---
T ss_pred             ECCCCHhHCEEEEEEEEcCCCceEEE-EEEEEcCCCceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECC---
Confidence            67899999999999999988876555 88899888877777878888999999999999999999999999998762   


Q ss_pred             CCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEec
Q psy15128         82 GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAV  161 (292)
Q Consensus        82 ~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~  161 (292)
                               .....|.|.+++.+|+|.|+|.+.|..+.......+.+.  ....+|.+...+....+.+|+.+.|.|.+.
T Consensus       386 ---------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~--~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~  454 (816)
T 3dmk_A          386 ---------HSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLG--GRFDPPVIRQAFQEETMEPGPSVFLKCVAG  454 (816)
T ss_dssp             ---------CCSSEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECC--CSSCCCEEEEECCCEEECSSSCEEEEEEEE
T ss_pred             ---------CCCCEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEc--cccCCCceEecCcceEEcCCCCEEEEEEEe
Confidence                     124579999999999999999999987766655555543  223466666667777889999999999999


Q ss_pred             cCCCCceEEEeCCeeCCCCCccEEE----cCCC----cEEEEeeecCCCCCC----------------------------
Q psy15128        162 GSPPPHIRWYKNGNSLPPEDTRINV----SSSG----SLQIDVLRDDFRAEP----------------------------  205 (292)
Q Consensus       162 ~~p~~~~~W~~~~~~l~~~~~~~~~----~~~~----~l~i~~~~~~d~g~~----------------------------  205 (292)
                      +.|.+.+.|++++..+.... ++..    ..++    .|.|.++..+|+|.|                            
T Consensus       455 g~p~p~v~W~~~g~~l~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~  533 (816)
T 3dmk_A          455 GNPTPEISWELDGKKIANND-RYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQM  533 (816)
T ss_dssp             CSSCCEEEEEETTEECCSCT-TEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCEECCC
T ss_pred             cCCCCEEEEEECCEECCCCC-CcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCeeEcc
Confidence            99999999999999987643 2221    2222    588999999999922                            


Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCcccccccccccccccc-ccccceeEEEEeec
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLG-ALSDDQWKLIAKNI  284 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~a~n~  284 (292)
                      ....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+..  ..+.....++        .|.|..+. ..|+|.|+|.|.|.
T Consensus       534 ~~~~v~~G~~v~l~C~~-~g~p~~~i~W~k~~~~l~~--~~~~~~~~~~--------~l~i~~v~~~~d~G~Y~C~a~n~  602 (816)
T 3dmk_A          534 EKKAIVAGETLIVTCPV-AGYPIDSIVWERDNRALPI--NRKQKVFPNG--------TLIIENVERNSDQATYTCVAKNQ  602 (816)
T ss_dssp             CCEEEETTCCEEEECCE-ECSSEEEEEEEETTEESCC--STTEEECTTS--------EEEESSCCHHHHCEEEEEEEEES
T ss_pred             CCeEEecCCeEEEEEEe-cCCCCCEEEEEECCeEccc--CCceEEecCC--------eEEEEecCccccCEEEEEEEEEC
Confidence            34567889999999998 8899999999999998853  2333332232        57788886 68999999999999


Q ss_pred             cccc
Q psy15128        285 RNQQ  288 (292)
Q Consensus       285 ~g~~  288 (292)
                      .|..
T Consensus       603 ~g~~  606 (816)
T 3dmk_A          603 EGYS  606 (816)
T ss_dssp             SSCE
T ss_pred             CCce
Confidence            9854

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=5.4e-35  Score=226.59  Aligned_cols=238  Identities=22%  Similarity=0.372  Sum_probs=182.0

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeC-CCeeEEEE-CCeEEeeccCCCcceeEE----eeecEEEEccCCCCCCeEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSP-LPSVFWTQ-EGSQVLMFPGNAYGHLHV----TQEGTLRIQGVQKEDAGFF  109 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~v~W~~-~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~g~Y  109 (292)
                      ++.+...|....+.+|+.++|.|.+.+.+ .+.+.|++ ++..+...    ..+...    .....|.|.+++.+|+|.|
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~----~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   77 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPN----QQRISVVWNDDDSSTLTIYNANIDDAGIY   77 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSS----CSSEEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccC----CceEEEEEcCCCeEEEEEecCCCCCCEEE
Confidence            45677778888899999999999998876 68999999 66544211    111211    1345899999999999999


Q ss_pred             EEEEEeCCcCe-eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCC-CccEEEc
Q psy15128        110 VCSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE-DTRINVS  187 (292)
Q Consensus       110 ~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~-~~~~~~~  187 (292)
                      +|.+.+..+.. .....|.+.     .++.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... ..++...
T Consensus        78 ~C~~~n~~g~~~~~~~~l~v~-----~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~  152 (291)
T 1qz1_A           78 KCVVTAEDGTQSEATVNVKIF-----QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL  152 (291)
T ss_dssp             EEEEECTTSCEEEEEEEEEEE-----CCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEEC
T ss_pred             EEEEEcCCCCeeEEEEEEEee-----ccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEc
Confidence            99999987542 334444443     3566777777788999999999999999999999999999887543 3455566


Q ss_pred             CCCcEEEEeeecCCCCCC---------------------------------cceEEeCCCceEEEeeCCCCCCCCeEEEe
Q psy15128        188 SSGSLQIDVLRDDFRAEP---------------------------------KDTRVASGETALLECGPPKGQPEPTLHWK  234 (292)
Q Consensus       188 ~~~~l~i~~~~~~d~g~~---------------------------------~~~~~~~g~~~~l~C~~~~~~p~~~~~W~  234 (292)
                      .++.|.|.++..+|+|.|                                 ....+..|+.+.|.|.+ .+.|.+.+.|+
T Consensus       153 ~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~-~g~p~p~i~W~  231 (291)
T 1qz1_A          153 SNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDA-DGFPEPTMSWT  231 (291)
T ss_dssp             TTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEE-EEESCCEEEEE
T ss_pred             cCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEE-EEeCCCcEEEE
Confidence            777899999999999822                                 12345679999999998 88999999999


Q ss_pred             EcCeEeccCCC--ceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        235 KNGQFIDLESS--KRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       235 ~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      ++|..+.....  .++.....       ...|.|..+..+|+|.|+|.|.|..|.++.
T Consensus       232 ~~g~~~~~~~~~~~~~~~~~~-------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  282 (291)
T 1qz1_A          232 KDGEPIENEEEDDEKHIFSDD-------SSELTIRNVDKNDEAEYVCIAENKAGEQDA  282 (291)
T ss_dssp             ETTEECCCC--CCSSEEECTT-------SCEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             ECCEECcCCCCCCcceEEcCC-------CcEEEEEecChhcCEEEEEEEEeCCCceEE
Confidence            99998864331  23333322       236889999999999999999999998764

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=2.1e-36  Score=251.33  Aligned_cols=262  Identities=13%  Similarity=0.103  Sum_probs=177.2

Q ss_pred             CcccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCC-CccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEee
Q psy15128          1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRP-QDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLM   79 (292)
Q Consensus         1 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~   79 (292)
                      .|.+++.+|+|.|+|.+.+..+..... +.|.|.  |.+...+ .+.....++.+.|.|.+.|.|.|.+.|++++.....
T Consensus       106 ~I~~v~~~D~G~Y~C~~~n~~~~~~~~-~~v~v~--~~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~  182 (527)
T 3qs9_E          106 VILKMTETQAGEYLLFIQSEATNYTIL-FTVSIR--NTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGES  182 (527)
T ss_dssp             EESSCCSSSCSEEEEEEEC--CEEEEE-EEEEEC-------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC------
T ss_pred             EECcCChhhCeeEEEEEEeccccEEEE-EEEEEC--CceeeccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCcc
Confidence            378999999999999999887665444 555555  3222221 222345577889999999999999999998765421


Q ss_pred             ccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEE-EEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEe
Q psy15128         80 FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR-AFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPC  158 (292)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~-~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C  158 (292)
                      ...  .    ...........+...|+|.|+|.|.|..|..... ..+.+..     .+.+  .+....+.+|+.+.|.|
T Consensus       183 ~~~--~----~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~-----~p~~--~p~~~~v~~G~~v~L~C  249 (527)
T 3qs9_E          183 CKE--E----SPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQ-----TPQT--TLPQLFLKVGEPLWIRC  249 (527)
T ss_dssp             -------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSS-----CCCC--SCCEEEECTTSCEEEEE
T ss_pred             ccc--c----CCcEEEEeeeeccccCCEEEEEEEEeCCCcccceEEEEEEec-----cCcc--CCCceEEeCCCeEEEEE
Confidence            100  0    0001112223345789999999999988765543 3343321     2222  44566788999999999


Q ss_pred             Eec-cCCCCceEEEeCCeeCCCCCcc--EE------EcCCCcEEEEeeecCCCCCC------------------------
Q psy15128        159 QAV-GSPPPHIRWYKNGNSLPPEDTR--IN------VSSSGSLQIDVLRDDFRAEP------------------------  205 (292)
Q Consensus       159 ~~~-~~p~~~~~W~~~~~~l~~~~~~--~~------~~~~~~l~i~~~~~~d~g~~------------------------  205 (292)
                      .+. +.|.+.+.|++++..+......  ..      ....++|.|.++..+|+|.|                        
T Consensus       250 ~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~L~V~~~p~i~~  329 (527)
T 3qs9_E          250 KAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINA  329 (527)
T ss_dssp             EEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTEEEEEEEEEEC--CEEEC
T ss_pred             EEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeCCCceEEEEEEccCcccc
Confidence            996 8899999999999887653211  01      11224589999999999933                        


Q ss_pred             ----cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEE
Q psy15128        206 ----KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIA  281 (292)
Q Consensus       206 ----~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a  281 (292)
                          ....+.+|+.+.|.|.+ .|.|.|.+.|+++|+++.....  ...         ....|.|..+..+|+|.|+|.|
T Consensus       330 ~~~~~~~~v~~G~~v~L~C~~-~g~P~p~i~W~k~g~~l~~~~~--~~~---------~~~~L~I~~v~~~D~G~YtC~A  397 (527)
T 3qs9_E          330 TNSSEDYEIDQYEEFCFSVRF-KAYPQIRCTWTFSRKSFPCEQK--GLD---------NGYSISKFCNHKHQPGEYIFHA  397 (527)
T ss_dssp             CCSCCEECCCTTCCCCEEEEE-EEESCCEEEEEETTEEEECBCC--BCS---------SSSEEEEECCCTTCCSCEEEEE
T ss_pred             ccCcccEEEcCCCeEEEEEEE-EecCCCEEEEEECCEECcCCcc--ccc---------CCcEEEEecCCcccCEEEEEEE
Confidence                12456689999999998 8999999999999999853222  111         1225788999999999999999


Q ss_pred             eeccccccc
Q psy15128        282 KNIRNQQQH  290 (292)
Q Consensus       282 ~n~~g~~~~  290 (292)
                      .|..|.++.
T Consensus       398 ~N~~g~~~~  406 (527)
T 3qs9_E          398 ENDDAQFTK  406 (527)
T ss_dssp             EETTEEEEE
T ss_pred             EeCCCcEEE
Confidence            999998764

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=7.8e-35  Score=227.08  Aligned_cols=240  Identities=25%  Similarity=0.464  Sum_probs=177.7

Q ss_pred             eCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEee--ecEEEEccCCC-CCCeEEE
Q psy15128         34 HAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ--EGTLRIQGVQK-EDAGFFV  110 (292)
Q Consensus        34 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~-~d~g~Y~  110 (292)
                      ..+|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+..   ..........  ...|.|.+++. +|+|.|+
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~---~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~   80 (304)
T 2yd9_A            4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS---QRFETIEFDESAGAVLRIQPLRTPRDENVYE   80 (304)
T ss_dssp             CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------C---TTEEEEEETTTTEEEEEECSCCTTTTCSEEE
T ss_pred             ccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCC---CceEEEEecCCCceEEEEecccccCCCeEEE
Confidence            3578888888889999999999999999999999999999887621   1111111111  25799999998 9999999


Q ss_pred             EEEEeCCcCeeEEEEEEEEeecCCC--CCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCC--ccEEE
Q psy15128        111 CSALSVAGSTTVRAFLQVTSVEDTP--PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED--TRINV  186 (292)
Q Consensus       111 C~~~~~~~~~~~~~~l~v~~~~~~~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~--~~~~~  186 (292)
                      |.+.|..+.....+.|.|......+  .|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+....  .++..
T Consensus        81 C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~  160 (304)
T 2yd9_A           81 CVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ  160 (304)
T ss_dssp             EEEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEE
T ss_pred             EEEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEe
Confidence            9999988877677777776432222  2667777777788999999999999999999999999999886532  24555


Q ss_pred             cCCCcEEEEeeecCCCCCC---------------------------------cceEEeCCCceEEEeeCCCCCCCCeEEE
Q psy15128        187 SSSGSLQIDVLRDDFRAEP---------------------------------KDTRVASGETALLECGPPKGQPEPTLHW  233 (292)
Q Consensus       187 ~~~~~l~i~~~~~~d~g~~---------------------------------~~~~~~~g~~~~l~C~~~~~~p~~~~~W  233 (292)
                      ..++.|.|.++..+|+|.|                                 ....+.+|+.+.|.|.+ .|.|.+.+.|
T Consensus       161 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~-~g~p~p~v~W  239 (304)
T 2yd9_A          161 LRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVA-VGSPMPYVKW  239 (304)
T ss_dssp             CTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEE-EEESCCEEEE
T ss_pred             CCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEE-eeeCCCEEEE
Confidence            6677899999999999822                                 22346789999999998 8999999999


Q ss_pred             eEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        234 KKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       234 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      +++|..+....  ...   .      ....|.+.  ...|+|.|+|.|+|..|.++.
T Consensus       240 ~~~~~~l~~~~--~~~---~------~~~~L~i~--~~~d~G~Y~C~a~N~~G~~~~  283 (304)
T 2yd9_A          240 MQGAEDLTPED--DMP---V------GRNVLELT--DVKDSANYTCVAMSSLGVIEA  283 (304)
T ss_dssp             EETTEECSCSS--SCC---B------SEEEEEEC--SCCSCEEEEEEEEETTEEEEE
T ss_pred             EECCEECCCcc--ccc---C------CcEEEEEc--ccccCEEEEEEEEeCCCcEEE
Confidence            99999885322  110   1      11124444  346999999999999998864

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=100.00  E-value=5.2e-34  Score=221.08  Aligned_cols=236  Identities=21%  Similarity=0.373  Sum_probs=176.5

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEE-CCeEEeeccCCCcceeEEee---ecEEEEccCCCCCCeEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQ-EGSQVLMFPGNAYGHLHVTQ---EGTLRIQGVQKEDAGFFV  110 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y~  110 (292)
                      .+|.+...+....+.+|+.++|.|.+.+.|. .+.|++ ++..+.  .   ..+.....   ...|.|.+++.+|+|.|+
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~--~---~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   76 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKII--S---TQRVVVQKEGVRSRLTIYNANIEDAGIYR   76 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCC--C---BTTEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCcc--C---CCcEEEecCCCEEEEEEccCCcccCEEEE
Confidence            4677888888889999999999999988765 899999 554432  1   11222222   348999999999999999


Q ss_pred             EEEEeCCcCee-EEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCC-CCccEEEcC
Q psy15128        111 CSALSVAGSTT-VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP-EDTRINVSS  188 (292)
Q Consensus       111 C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~-~~~~~~~~~  188 (292)
                      |.+.+..+... ....+.+..     ++.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ...++....
T Consensus        77 C~~~n~~g~~~~~~~~l~v~~-----~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~  151 (291)
T 2wim_A           77 CQATDAKGQTQEATVVLEIYQ-----KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA  151 (291)
T ss_dssp             EEEECSSSCEEEEEEEEEEEC-----CCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECT
T ss_pred             EEEecccCceEEEEEEEEecC-----CcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEcc
Confidence            99999877653 334444432     34444455667788999999999999999999999999887764 235566667


Q ss_pred             CCcEEEEeeecCCCCCC-------------------------------c--ceEEeCCCceEEEeeCCCCCCCCeEEEeE
Q psy15128        189 SGSLQIDVLRDDFRAEP-------------------------------K--DTRVASGETALLECGPPKGQPEPTLHWKK  235 (292)
Q Consensus       189 ~~~l~i~~~~~~d~g~~-------------------------------~--~~~~~~g~~~~l~C~~~~~~p~~~~~W~~  235 (292)
                      ++.|.|.++..+|+|.|                               .  ...+.+|+.+.|.|.+ .+.|.+.+.|++
T Consensus       152 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~v~W~~  230 (291)
T 2wim_A          152 NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA-SGSPEPAISWFR  230 (291)
T ss_dssp             TSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBC-CCBSCCEEEEEE
T ss_pred             CCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEe-ecCCCCeEEEEE
Confidence            77899999999888822                               1  2345679999999998 889999999999


Q ss_pred             cCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        236 NGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       236 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      +|..+..  +.++.+...       ...|.|..+..+|+|.|+|.|+|..|.++.+
T Consensus       231 ~g~~~~~--~~~~~~~~~-------~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~  277 (291)
T 2wim_A          231 NGKLIEE--NEKYILKGS-------NTELTVRNIINSDGGPYVCRATNKAGEDEKQ  277 (291)
T ss_dssp             TTEECCC--TTTEEECST-------TCEEEEESCCSTTCEEEEEEEEETTEEEEEE
T ss_pred             CCEECcC--CccEEEcCC-------ccEEEEeeCCcccCEEEEEEEEECCCceeee
Confidence            9998853  333333222       2368899999999999999999999998653

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=100.00  E-value=5.4e-35  Score=239.27  Aligned_cols=277  Identities=19%  Similarity=0.208  Sum_probs=185.6

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeC---CCcEEeCCCccEEecCCcEEEEEEEee-eCCC-eeEEEECCeE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA---PPSFVVRPQDQKVGLNGIASFQCVAEG-SPLP-SVFWTQEGSQ   76 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~~~~   76 (292)
                      |.+++.+|+|.|+|.+.+..+......+.|.|..   +|.+...+......+|+.+.|.|.+.+ .|.+ .+.|++++..
T Consensus        79 I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~  158 (438)
T 1qgc_4           79 IDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE  158 (438)
T ss_dssp             ESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred             eCCCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEE
Confidence            7899999999999999988765444447788864   566655444444456889999999987 5666 8999999987


Q ss_pred             Eeec-----cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCC
Q psy15128         77 VLMF-----PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLH  151 (292)
Q Consensus        77 ~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g  151 (292)
                      +...     .........+...+.|.|.++..+|+|.|+|.+.|..+.......  +..   ..++.....+....+.+|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~--~~~---~~~~~~~~~~~~~~v~~G  233 (438)
T 1qgc_4          159 RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKS--FNR---NECEVMLVESGGGLVKPG  233 (438)
T ss_dssp             ECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEE--EET---TC-CCEEEEECCEEECTT
T ss_pred             cCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceecc--ccc---ccceeEEecCCceEEecC
Confidence            6321     000001111223458999999999999999999998776533332  221   112223334556678899


Q ss_pred             CeEEEEeEeccCC--CCceEEEeC--CeeCCC----------------CCccEEEcC-----CCcEEEEeeecCCCCCC-
Q psy15128        152 SVAFLPCQAVGSP--PPHIRWYKN--GNSLPP----------------EDTRINVSS-----SGSLQIDVLRDDFRAEP-  205 (292)
Q Consensus       152 ~~v~l~C~~~~~p--~~~~~W~~~--~~~l~~----------------~~~~~~~~~-----~~~l~i~~~~~~d~g~~-  205 (292)
                      +.++|.|.+.+.|  .+.+.|+++  +..+..                ...++....     ...|.|.++..+|+|.| 
T Consensus       234 ~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  313 (438)
T 1qgc_4          234 GSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYY  313 (438)
T ss_dssp             CCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEE
T ss_pred             CcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEE
Confidence            9999999999887  578999996  443310                012333222     12688888888888722 


Q ss_pred             ------------------------------cce-------EEeCCCceEEEeeCCCCC-CCC-eEEEeEcCeEeccCCCc
Q psy15128        206 ------------------------------KDT-------RVASGETALLECGPPKGQ-PEP-TLHWKKNGQFIDLESSK  246 (292)
Q Consensus       206 ------------------------------~~~-------~~~~g~~~~l~C~~~~~~-p~~-~~~W~~~g~~~~~~~~~  246 (292)
                                                    +..       .+.+|+.++|.|.+ .+. |.+ .|.|+++|.++......
T Consensus       314 C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~-~g~~P~~~~v~W~~~g~~~~~~~~~  392 (438)
T 1qgc_4          314 CVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLV-KGYFPEPVTVTWNSGSLSSGVHTFP  392 (438)
T ss_dssp             EEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEE-ESCBSSCCEEEEGGGTCCSSEEECC
T ss_pred             EEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEe-ccccCCCcEEEEecCCCCCceeecC
Confidence                                          000       12368999999998 565 877 99999999877422111


Q ss_pred             eEEecCCCccccccccccccccccccccceeEEEEeecccccc
Q psy15128        247 RVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       247 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  289 (292)
                      .+. . .+.+.  ....|.|..+...| |.|+|.|.|..|...
T Consensus       393 ~~~-~-~g~~~--~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~  430 (438)
T 1qgc_4          393 AVL-Q-SDLYT--LSSSVTVPSSTWPS-ETVTCNVAHPASSTK  430 (438)
T ss_dssp             CEE-E-TTEEE--EEEEEEEEEEHHHH-SCCEEEEEEGGGTEE
T ss_pred             ccc-c-CCcEE--EEEEEEEehhhcCC-ceEEEEEEeCCCCcc
Confidence            121 1 12222  22357788888888 999999999999864

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=100.00  E-value=4e-35  Score=234.25  Aligned_cols=237  Identities=14%  Similarity=0.152  Sum_probs=177.2

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeecc
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFP   81 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~   81 (292)
                      |.+++.+|+|.|+|.+.+..+     .+.|.|..   +...+ ...+.+|+.++|.|.+.+.|.+.+.|++++..+    
T Consensus        71 I~~v~~~D~G~Y~C~~~n~~~-----~~~l~V~~---~~~~~-~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~----  137 (363)
T 1wio_A           71 IKNLKIEDSDTYICEVEDQKE-----EVQLLVFG---LTANS-DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN----  137 (363)
T ss_dssp             ECSCCGGGCEEEEEEETTEEE-----EEEEEEEE---EEESS-CSSEESBSCEEEEEECCTTCCCCEEEECSSSCE----
T ss_pred             ECCCCHHHCEEEEEEEEECCC-----cEEEEEEe---CCCCC-ceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc----
Confidence            689999999999999988643     26666664   22333 346789999999999988889999999987643    


Q ss_pred             CCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEec
Q psy15128         82 GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAV  161 (292)
Q Consensus        82 ~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~  161 (292)
                              ......|.|.+++.+|+|.|+|.+.+..+.......+.+..    ++..    +....+.+|+.+.|.|.+.
T Consensus       138 --------~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~----~p~~----~~~~~~~~G~~v~l~C~~~  201 (363)
T 1wio_A          138 --------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA----FQKA----SSIVYKKEGEQVEFSFPLA  201 (363)
T ss_dssp             --------EEESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEEC----CSCS----EEEEEEETBCCEEEECCCC
T ss_pred             --------cccceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEec----CCCC----CCceEEecCCEEEEEEEEe
Confidence                    23456899999999999999999998755444444444432    1111    1344577899999999887


Q ss_pred             c-----CCCCceEEEeCCeeCCCC-------CccEEEc-----------C--CCcEEEEeeecCCCCCCcceE-------
Q psy15128        162 G-----SPPPHIRWYKNGNSLPPE-------DTRINVS-----------S--SGSLQIDVLRDDFRAEPKDTR-------  209 (292)
Q Consensus       162 ~-----~p~~~~~W~~~~~~l~~~-------~~~~~~~-----------~--~~~l~i~~~~~~d~g~~~~~~-------  209 (292)
                      +     .|.+.+.|+++|..+...       ...+.+.           .  ...|.|.++..+|+|.|....       
T Consensus       202 ~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g  281 (363)
T 1wio_A          202 FTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTG  281 (363)
T ss_dssp             CCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTC
T ss_pred             cccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcC
Confidence            7     778899999999887762       3333331           2  338999999999999552221       


Q ss_pred             -----------EeCCCceEEEeeCCCCCCCCe--EEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccce
Q psy15128        210 -----------VASGETALLECGPPKGQPEPT--LHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQ  276 (292)
Q Consensus       210 -----------~~~g~~~~l~C~~~~~~p~~~--~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~  276 (292)
                                 ...|+.+.|.|.+ .+.|++.  +.|+++|+.+..                  ...|.|..+..+|+|.
T Consensus       282 ~~~~~~~l~V~~v~g~~~~l~C~~-~g~p~p~~~i~W~~~~~~~~~------------------~~~l~i~~v~~~d~G~  342 (363)
T 1wio_A          282 KLHQEVNLVVMRATQLQKNLTCEV-WGPTSPKLMLSLKLENKEAKV------------------SKREKAVWVLNPEAGM  342 (363)
T ss_dssp             CEEEEEEEEEEEECCCSSSEEEEE-ESSCCTTCCEEEECSSSSCSE------------------EESSSEEEESSCCSEE
T ss_pred             eEEEEEeEEEEEecCCCeeEEEEE-ccccCCCccEEEEeCCCceee------------------eeeeeeeeecccccee
Confidence                       1237899999998 8888887  999999987741                  1146678899999999


Q ss_pred             eEEEEeeccc
Q psy15128        277 WKLIAKNIRN  286 (292)
Q Consensus       277 y~C~a~n~~g  286 (292)
                      |+|.|+|...
T Consensus       343 Y~C~a~~~~~  352 (363)
T 1wio_A          343 WQCLLSDSGQ  352 (363)
T ss_dssp             EEEEECSSSS
T ss_pred             EEEEEecCCe
Confidence            9999997543

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=4.3e-33  Score=236.01  Aligned_cols=272  Identities=20%  Similarity=0.275  Sum_probs=189.4

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCC---CeeEEE-ECCe--
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPL---PSVFWT-QEGS--   75 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~v~W~-~~~~--   75 (292)
                      |.+++.+|+|.|+|.+.|..+..... +.|.|..++     +....+.+|+.+.|.|.+ +.+.   +.+.|+ +++.  
T Consensus       189 I~~v~~~D~G~Y~C~a~n~~g~~~~~-~~l~V~~~~-----p~~~~~~~G~~v~l~C~~-~~~~~~~~~~~w~~~~g~~~  261 (585)
T 2ocw_A          189 INQLRLSDAGQYLCQAGDDSNSNKKN-ADLQVLKPE-----PELVYEDLRGSVTFHCAL-GPEVANVAKFLCRQSSGENC  261 (585)
T ss_pred             EccCChhHCeEEEEEeccCCccccce-EEEEEccCC-----CceeEEcCCCcEEEEEEc-CCCCCCceEEEEEeCCCCCc
Confidence            67899999999999999888776555 888887653     234457789999999997 4333   578886 7763  


Q ss_pred             -EEeeccCC----CcceeEEee---ec--EEEEccCCCCCCeEEEEEEEeCCcCee----EEEEEEEEeecCCCCCeEEe
Q psy15128         76 -QVLMFPGN----AYGHLHVTQ---EG--TLRIQGVQKEDAGFFVCSALSVAGSTT----VRAFLQVTSVEDTPPPIVQV  141 (292)
Q Consensus        76 -~~~~~~~~----~~~~~~~~~---~~--~l~i~~~~~~d~g~Y~C~~~~~~~~~~----~~~~l~v~~~~~~~~~~~~~  141 (292)
                       .+....+.    ...+.....   ++  .|.|.+++.+|+|.|+|.+.|......    ..+.|.|..     +|.+..
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~~-----~p~~~~  336 (585)
T 2ocw_A          262 DVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNE-----ESTIPR  336 (585)
T ss_pred             ceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCccccCceeeEEEEEec-----cccccc
Confidence             22111100    112222221   23  799999999999999999998533321    555566653     444555


Q ss_pred             CCCCceecCCCeEEEEeEeccCCCCce----EEEe--CCe--eCCCC--------CccEEEc---CCCc--EEEEeeecC
Q psy15128        142 GPSNQTLPLHSVAFLPCQAVGSPPPHI----RWYK--NGN--SLPPE--------DTRINVS---SSGS--LQIDVLRDD  200 (292)
Q Consensus       142 ~~~~~~~~~g~~v~l~C~~~~~p~~~~----~W~~--~~~--~l~~~--------~~~~~~~---~~~~--l~i~~~~~~  200 (292)
                      .+....+.+|+.+.|.|.+.+.|.+.+    .|++  +|.  .+...        ..++.+.   .++.  |.|.++..+
T Consensus       337 ~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~  416 (585)
T 2ocw_A          337 SPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSR  416 (585)
T ss_pred             CCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChh
Confidence            567777889999999999999988876    7999  886  44321        1233332   2344  888999999


Q ss_pred             CCCC----------------------------CcceEEeCCCceEEEeeCCC---CCCCCeEEEeEcCeEeccCCCce--
Q psy15128        201 FRAE----------------------------PKDTRVASGETALLECGPPK---GQPEPTLHWKKNGQFIDLESSKR--  247 (292)
Q Consensus       201 d~g~----------------------------~~~~~~~~g~~~~l~C~~~~---~~p~~~~~W~~~g~~~~~~~~~~--  247 (292)
                      |+|.                            +....+.+|+.+.|.|.+..   +.|.+.+.|+++|..+.......  
T Consensus       417 D~G~Y~C~an~~g~~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~  496 (585)
T 2ocw_A          417 DAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPS  496 (585)
T ss_pred             hCEEEEEcccCCCccceeEEEEEecCccccccCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCC
Confidence            9982                            24556789999999999831   67888999999998874322111  


Q ss_pred             --EEecCCCccccccccccccccccccccceeEEEEeecccccc
Q psy15128        248 --VSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       248 --~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  289 (292)
                        +......    .....|.|..+..+|+|.|+|.|.|..|...
T Consensus       497 ~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  536 (585)
T 2ocw_A          497 KAFVNCDEN----SRLVSLTLNLVTRADEGWYWCGVKQGHFYGE  536 (585)
T ss_pred             cceEEecCc----ccEEEEEECCCCcccCeEEEEEeEeCCCccE
Confidence              1111110    1123699999999999999999999998654

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=8.1e-33  Score=231.23  Aligned_cols=278  Identities=15%  Similarity=0.158  Sum_probs=180.1

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEE----eCCCcEEeCCCccEEecCCcEEEEEEEeee-CCC-eeEEEECCe
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTV----HAPPSFVVRPQDQKVGLNGIASFQCVAEGS-PLP-SVFWTQEGS   75 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v----~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~~   75 (292)
                      |.+++.+|+|.|+|.+.|..+..... +.+.+    ..+|.+........+.+|+.+.|.|.+.+. |.+ .+.|++++.
T Consensus       182 i~~~~~~d~G~Y~C~a~n~~~~~~~~-~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~  260 (523)
T 2rcj_C          182 LTPEQWKSHRSYSCQVTHEGSTVEKT-VAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGAL  260 (523)
T ss_pred             EechhcCCCceEEEEEEecCcccccc-eeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCc
Confidence            66788899999999999987765444 44322    235555544444456789999999999886 777 899999987


Q ss_pred             EEeeccCCC--cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCce-ecCCC
Q psy15128         76 QVLMFPGNA--YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQT-LPLHS  152 (292)
Q Consensus        76 ~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~-~~~g~  152 (292)
                      .+.......  .........+.|.|.++..+| |.|+|.|.|..+.......+.+..    .+.+....+.... +.+|+
T Consensus       261 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~----~P~~~~~~p~~~~~v~~g~  335 (523)
T 2rcj_C          261 TSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLS----LPSVFLFPPKPKDTLMISR  335 (523)
T ss_pred             ccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCc----CceEEecCCCchhhcccCC
Confidence            542111000  000111224589999999999 999999999988766555554431    2333334444343 78899


Q ss_pred             eEEEEeEeccCCC----CceEEEeCCeeCCCCCccE-EEcCCC------cEEEEeeecCCCCCC----------------
Q psy15128        153 VAFLPCQAVGSPP----PHIRWYKNGNSLPPEDTRI-NVSSSG------SLQIDVLRDDFRAEP----------------  205 (292)
Q Consensus       153 ~v~l~C~~~~~p~----~~~~W~~~~~~l~~~~~~~-~~~~~~------~l~i~~~~~~d~g~~----------------  205 (292)
                      .+.|.|.+.+.|+    +.+.|+|+|.++....... ....++      .|.|..+..+|+|.|                
T Consensus       336 ~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~  415 (523)
T 2rcj_C          336 TPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKT  415 (523)
T ss_pred             ceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEE
Confidence            9999999988643    4899999999886543211 112222      366666667777722                


Q ss_pred             ----------cceEE-------eCCCceEEEeeCCCCCCCC--eEEEeEcCeEeccCCCceEEecCCCcccccccccccc
Q psy15128        206 ----------KDTRV-------ASGETALLECGPPKGQPEP--TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFG  266 (292)
Q Consensus       206 ----------~~~~~-------~~g~~~~l~C~~~~~~p~~--~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i  266 (292)
                                +...+       ..|..++|.|.+ .|.|++  .+.|+++|+++............++.+..  ...|.+
T Consensus       416 ~~~~~~~~~~P~v~~~~~~~~~~~~~~~~l~C~~-~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~--~~~l~v  492 (523)
T 2rcj_C          416 ISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLV-KGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFL--YSKLTV  492 (523)
T ss_pred             EEcccCCCCCCEEEEeCCChHHccCCceEEEEEE-EeeECCCCEEEEEECCEECCCeeeccceeCCCCCEEE--EEEEEE
Confidence                      11111       124559999998 665544  99999999998633222333344443331  123444


Q ss_pred             ccccccccceeEEEEeeccccc
Q psy15128        267 SVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       267 ~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      ......|.|.|+|.|.|.....
T Consensus       493 ~~~~~~~~g~Y~C~a~n~~l~~  514 (523)
T 2rcj_C          493 DKSRWQQGNVFSCSVMHEALHN  514 (523)
T ss_pred             ChHHccCCCeEEEEEEcCCcCC
Confidence            4555577999999999987543

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=5.7e-32  Score=229.12  Aligned_cols=271  Identities=18%  Similarity=0.261  Sum_probs=192.0

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeee-CCCeeEEEECCeEEee-
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGS-PLPSVFWTQEGSQVLM-   79 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~-   79 (292)
                      |.+++.+|+|.|+|.+.+..+..... +.|.|..+|.+...+....+.+|+.+.|.|.+.+. +.+.+.|++++..... 
T Consensus        79 I~~v~~~D~G~Y~C~~~n~~~~~~~~-~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~  157 (585)
T 2ocw_A           79 IAQLSQDDSGRYKCGLGINSRGLSFD-VSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVL  157 (585)
T ss_pred             ECCCCcccCEEEEEEcccCCCCceEE-EEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceE
Confidence            78999999999999999887776555 89999999998888888899999999999999865 4568999998754211 


Q ss_pred             -ccC------CCcceeEEeeec------EEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCc
Q psy15128         80 -FPG------NAYGHLHVTQEG------TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQ  146 (292)
Q Consensus        80 -~~~------~~~~~~~~~~~~------~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~  146 (292)
                       ...      ....+..+..++      .|.|.+++.+|+|.|+|.+.|..+.....+.|.|..    ++      |...
T Consensus       158 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~----~~------p~~~  227 (585)
T 2ocw_A          158 VIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLK----PE------PELV  227 (585)
T ss_pred             EecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEcc----CC------Ccee
Confidence             010      001222332222      799999999999999999999888777677776653    11      2334


Q ss_pred             eecCCCeEEEEeEeccCCC---CceEEE-eCCeeCC---C--------CCccEEEc---CCC--cEEEEeeecCCCCCC-
Q psy15128        147 TLPLHSVAFLPCQAVGSPP---PHIRWY-KNGNSLP---P--------EDTRINVS---SSG--SLQIDVLRDDFRAEP-  205 (292)
Q Consensus       147 ~~~~g~~v~l~C~~~~~p~---~~~~W~-~~~~~l~---~--------~~~~~~~~---~~~--~l~i~~~~~~d~g~~-  205 (292)
                      .+.+|+.+.|.|.+ +.+.   +.+.|+ +++....   .        ...++.+.   .++  .|.|.++..+|+|.| 
T Consensus       228 ~~~~G~~v~l~C~~-~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~  306 (585)
T 2ocw_A          228 YEDLRGSVTFHCAL-GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYL  306 (585)
T ss_pred             EEcCCCcEEEEEEc-CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEE
Confidence            57799999999997 4433   578886 7773211   1        11233332   144  689999999998822 


Q ss_pred             --------------------------------cceEEeCCCceEEEeeCCCCCCCCeE----EEeE--cCe--EeccCC-
Q psy15128        206 --------------------------------KDTRVASGETALLECGPPKGQPEPTL----HWKK--NGQ--FIDLES-  244 (292)
Q Consensus       206 --------------------------------~~~~~~~g~~~~l~C~~~~~~p~~~~----~W~~--~g~--~~~~~~-  244 (292)
                                                      ....+.+|+.+.|.|.+ .+.|.+.+    .|++  +|.  .+.... 
T Consensus       307 C~a~n~g~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~-~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~  385 (585)
T 2ocw_A          307 CGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPY-NRKESKSIKYWCLWEGAQNGRCPLLVDSEG  385 (585)
T ss_pred             EEEEcCCCccccCceeeEEEEEecccccccCCcceEEEeCCcEEEEEec-CCCCCccEEEEEEEEccCCCCCceeeeecc
Confidence                                            34456789999999998 88888876    7999  887  553211 


Q ss_pred             ------CceEEecCCCccccccccccccccccccccceeEEEEeecccccc
Q psy15128        245 ------SKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       245 ------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  289 (292)
                            ..++.+..+.   ......|.|..+..+|+|.|+|+| |..|..+
T Consensus       386 ~~~~~~~~r~~~~~~~---~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~  432 (585)
T 2ocw_A          386 WVKAQYEGRLSLLEEP---GNGTFTVILNQLTSRDAGFYWCLT-NGDTLWR  432 (585)
T ss_pred             eeecccCCCEEEeccC---CCcEEEEEECCCChhhCEEEEEcc-cCCCccc
Confidence                  1222222110   011124889999999999999999 9888764

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=3.7e-31  Score=214.27  Aligned_cols=240  Identities=25%  Similarity=0.423  Sum_probs=180.5

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEee-eCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccC-----CCCCCeE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGV-----QKEDAGF  108 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~g~  108 (292)
                      ....+...|....+.+|+.++|.|.+.+ .|.+.+.|+|++..+...   ...+.....++.|.|.++     +.+|+|.
T Consensus        20 ~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~---~~~~~~~~~~~~l~i~~~~~~~~~~~D~G~   96 (403)
T 3laf_A           20 RSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALG---MDDRKQQLPNGSLLIQNILHSRHHKPDEGL   96 (403)
T ss_dssp             CSSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTT---SCTTEEECTTSCEEECSCCCBTTBCSSCEE
T ss_pred             eeEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccC---CcccEEEecCCcEEEeeeeccCCCCCcceE
Confidence            3456677888899999999999999987 577789999999876321   123344445667888777     6779999


Q ss_pred             EEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCC--CCccEEE
Q psy15128        109 FVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP--EDTRINV  186 (292)
Q Consensus       109 Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~--~~~~~~~  186 (292)
                      |+|.+.+..+.......+.+.+   ..++.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..  ...+...
T Consensus        97 Y~C~~~~~~~~~~~s~~~~l~v---~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~  173 (403)
T 3laf_A           97 YQCEASLGDSGSIISRTAKVMV---AGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVV  173 (403)
T ss_dssp             EEEEEECGGGCEEECCCEEEEE---CCCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEE
T ss_pred             EEEEEEeCCCccEEEEEEEEEe---cCCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEE
Confidence            9999986544443333333332   2255666667777889999999999999999999999999988753  2245556


Q ss_pred             cCCCcEEEEeeecCCCCCC------------------------------------cceEEeCCCceEEEeeCCCCCCCCe
Q psy15128        187 SSSGSLQIDVLRDDFRAEP------------------------------------KDTRVASGETALLECGPPKGQPEPT  230 (292)
Q Consensus       187 ~~~~~l~i~~~~~~d~g~~------------------------------------~~~~~~~g~~~~l~C~~~~~~p~~~  230 (292)
                      ...+.|.|.++..+|+|.|                                    ....+.+|+.+.|.|.+ .+.|.+.
T Consensus       174 ~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~  252 (403)
T 3laf_A          174 LPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCV-SGYPPPS  252 (403)
T ss_dssp             CTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEE-EEESCCE
T ss_pred             cCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEc-CCCCCCe
Confidence            6677899999999998811                                    23456789999999998 7889999


Q ss_pred             EEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        231 LHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       231 ~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      +.|++++..+.... .+.....+        ..|.|..+..+|+|.|+|.|.|..|..+.
T Consensus       253 ~~W~~~~~~~~~~~-~~~~~~~~--------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  303 (403)
T 3laf_A          253 FTWLRGEEVIQLRS-KKYSLLGG--------SNLLISNVTDDDSGTYTCVVTYKNENISA  303 (403)
T ss_dssp             EEEEETTEECCCSS-SSEEEETT--------TEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             EEEEECCeeccCCC-ceEEECCc--------cEEEEeCCCHHHCEEEEEEEEcCCCceEE
Confidence            99999999885322 22222222        25889999999999999999999987654

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=100.00  E-value=2e-32  Score=224.37  Aligned_cols=282  Identities=15%  Similarity=0.141  Sum_probs=177.6

Q ss_pred             cccCCcCCCeeEEEEEEecccc--cccccEEEEEeC----CCcEEeCCCccEEecCCcEEEEEEEeee-CCC-eeEEEEC
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGE--RETKPALLTVHA----PPSFVVRPQDQKVGLNGIASFQCVAEGS-PLP-SVFWTQE   73 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~   73 (292)
                      |.+++.+|+|.|+|.+.+..+.  .....+.|.|..    +|.+...+....+.+|+.++|.|.+.+. |.+ .+.|+++
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  162 (444)
T 1igt_B           83 MSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSG  162 (444)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             ECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecC
Confidence            7899999999999999986543  222337788873    3544433323335789999999999885 766 9999998


Q ss_pred             CeEEeeccCCC-cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEe-------------ecCCCCCeE
Q psy15128         74 GSQVLMFPGNA-YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS-------------VEDTPPPIV  139 (292)
Q Consensus        74 ~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~-------------~~~~~~~~~  139 (292)
                      +..+....... .........+.|.|.++..+| |.|+|.+.|..+.......+.+..             .....+|.+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v  241 (444)
T 1igt_B          163 SLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSV  241 (444)
T ss_dssp             TBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEE
T ss_pred             CCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceE
Confidence            86521110000 000112234579999999999 999999999888765444443210             011113443


Q ss_pred             -EeCCCCce-ecCCCeEEEEeEeccCC----CCceEEEeCCeeCCCCCcc-EEEcC------CCcEEEEeeecCCCCCC-
Q psy15128        140 -QVGPSNQT-LPLHSVAFLPCQAVGSP----PPHIRWYKNGNSLPPEDTR-INVSS------SGSLQIDVLRDDFRAEP-  205 (292)
Q Consensus       140 -~~~~~~~~-~~~g~~v~l~C~~~~~p----~~~~~W~~~~~~l~~~~~~-~~~~~------~~~l~i~~~~~~d~g~~-  205 (292)
                       ...+.... +.+|+.++|.|.+.+.+    .+.+.|++++..+...... .....      .+.|.|.++..+|+|.| 
T Consensus       242 ~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~  321 (444)
T 1igt_B          242 FIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFK  321 (444)
T ss_dssp             EEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEE
T ss_pred             EecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEE
Confidence             33333333 58899999999998874    3589999999887543211 11111      23577777777777721 


Q ss_pred             -------------------------cceEEe-------CCCceEEEeeCCCC-CCCC-eEEEeEcCeEeccCCCceEEec
Q psy15128        206 -------------------------KDTRVA-------SGETALLECGPPKG-QPEP-TLHWKKNGQFIDLESSKRVSIL  251 (292)
Q Consensus       206 -------------------------~~~~~~-------~g~~~~l~C~~~~~-~p~~-~~~W~~~g~~~~~~~~~~~~~~  251 (292)
                                               +.+.+.       .+..++|.|.+ .| +|++ .|.|+++|.++...........
T Consensus       322 C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~-~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~  400 (444)
T 1igt_B          322 CKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMV-TDFMPEDIYVEWTNNGKTELNYKNTEPVLD  400 (444)
T ss_dssp             EEEECTTCSSCEEEEEECCCCCCBCCEEEEECCCGGGTTSSEEEEEEEE-EEEBSSCCEEEEEETTEECSSEEECCCEEC
T ss_pred             EEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCChHHccCCeEEEEEEE-EeeeCCCCEEEEEECCEEccccccccceeC
Confidence                                     111111       23459999998 56 6665 9999999998832111122223


Q ss_pred             CCCccccccccccccccccccccceeEEEEeecccc
Q psy15128        252 GDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQ  287 (292)
Q Consensus       252 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~  287 (292)
                      .++.+..  ...|.+.....+|.|.|+|.|.|..-.
T Consensus       401 ~~g~~~~--~s~l~i~~~~~~d~g~YtC~a~n~~l~  434 (444)
T 1igt_B          401 SDGSYFM--YSKLRVEKKNWVERNSYSCSVVHEGLH  434 (444)
T ss_dssp             TTSCEEE--EEEEEEEHHHHHTCCCEEEEEECTTSG
T ss_pred             CCCCEEE--EEEEEEChHHhcCCCeEEEEEECCCcC
Confidence            3443322  124555666667799999999998643

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=3.9e-31  Score=217.12  Aligned_cols=249  Identities=16%  Similarity=0.211  Sum_probs=164.9

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEE-eCCCccEEecCCcEEEEEEEeeeCCC---eeEEEECCeEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFV-VRPQDQKVGLNGIASFQCVAEGSPLP---SVFWTQEGSQV   77 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~---~v~W~~~~~~~   77 (292)
                      |.+++. |+| |+|.+.+..+..... +.|.|..+|.+. ..+....+.+|+.+.|.|.+.+.|++   .|.|+|++..+
T Consensus        54 i~~v~~-d~g-Y~C~a~~~~~~~~~~-~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l  130 (450)
T 1z7z_I           54 LSNVQE-DSQ-PMCYSNCPDGQSTAK-TFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKEL  130 (450)
T ss_dssp             EEEECS-CBC-CEEEEEETTEEEEEE-CEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEE
T ss_pred             EEeccc-CCe-eEEEEeCCCCcceeE-EEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEe
Confidence            567777 999 999997554444444 888888887766 56677889999999999999998877   89999999877


Q ss_pred             eeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCee--------EEEEEEEEeecCCCCCeEEeCCCCceec
Q psy15128         78 LMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT--------VRAFLQVTSVEDTPPPIVQVGPSNQTLP  149 (292)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~--------~~~~l~v~~~~~~~~~~~~~~~~~~~~~  149 (292)
                      .......     ....+.|.|.++..+|+|.|+|.+.|..+...        ....+.+... ...+|.+..   ...+.
T Consensus       131 ~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~-~~~~p~~~~---~~~v~  201 (450)
T 1z7z_I          131 KREPAVG-----EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVL-PATPPQLVS---PRVLE  201 (450)
T ss_dssp             EEEECCT-----TTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCC-CSSCCEEEC---CSEEE
T ss_pred             ecccccc-----cccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeecc-CCCCCEecC---ceeEE
Confidence            5332111     12245899999999999999999998866422        1122333211 012233322   15688


Q ss_pred             CCCeEEEEeEeccC-C--CCceEEEeCCeeCCCCCccEEEcCCCcEEEE---eeecCCCC--CC----------------
Q psy15128        150 LHSVAFLPCQAVGS-P--PPHIRWYKNGNSLPPEDTRINVSSSGSLQID---VLRDDFRA--EP----------------  205 (292)
Q Consensus       150 ~g~~v~l~C~~~~~-p--~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~---~~~~~d~g--~~----------------  205 (292)
                      +|+.+.|.|.+.+. |  .+.+.|++++..+..   .+....+ .+.+.   ++..+|+|  .|                
T Consensus       202 ~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~---~~~~~~~-~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~  277 (450)
T 1z7z_I          202 VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP---TVTYGND-SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQT  277 (450)
T ss_dssp             TTSEEEEEEEEESCTTGGGCEEEEEETTEECCC---EEEEETT-EEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEE
T ss_pred             eCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc---eEEecCC-ceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEE
Confidence            99999999999888 6  678999999998865   2222222 22222   45667777  22                


Q ss_pred             -------------cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCcccccccccccccccccc
Q psy15128        206 -------------KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       206 -------------~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                                   ....+.+|+.++|.|.+ .  |.+.+.|  +|.++.. .+              ....|.|..+..+
T Consensus       278 l~V~~~~~p~i~~~~~~v~~G~~v~l~C~~-~--p~p~i~W--~g~~~~~-~~--------------~~~~L~i~~~~~~  337 (450)
T 1z7z_I          278 VTIYSFPAPNVILTKPEVSEGTEVTVKCEA-H--PRAKVTL--NGVPAQP-LG--------------PRAQLLLKATPED  337 (450)
T ss_dssp             EEEECCCCCEEEESCSEEETTCEEEEEEEC----------------------C--------------CCCCEEEECCGGG
T ss_pred             EEEecCCCCeEecCCeeEeCCCcEEEEEec-C--CCCEeEE--CCEEcCC-CC--------------ceEEEEEecCccc
Confidence                         12357789999999998 4  8899999  7777621 11              1125888999999


Q ss_pred             ccceeEEEEeeccc
Q psy15128        273 SDDQWKLIAKNIRN  286 (292)
Q Consensus       273 ~~g~y~C~a~n~~g  286 (292)
                      |+|.|+|.|.|..|
T Consensus       338 d~G~Y~C~a~n~~~  351 (450)
T 1z7z_I          338 NGRSFSCSATLEVA  351 (450)
T ss_dssp             TTCEEEEEEEEEET
T ss_pred             CCceEEEEEEcCCC
Confidence            99999999998766

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=100.00  E-value=6.5e-33  Score=217.45  Aligned_cols=237  Identities=17%  Similarity=0.218  Sum_probs=167.2

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeee-CCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      +|.+.. +....+.+|+.++|.|.+.+. |.+.+.|++++..+....  ..  ........|.|.+++.+|+|.|+|.+.
T Consensus         7 ~P~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~--~~--~~~~~~~~L~i~~~~~~d~G~Y~C~~~   81 (317)
T 2y25_A            7 GPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE--KH--DFKDGICTLLITEFSKKDAGIYEVILK   81 (317)
T ss_dssp             CCEEEE-EEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSC--C-------CCEEEEETTCCSTTCSCEEEEEE
T ss_pred             CCcEee-eeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCC--cE--EEECCeEEEEEccCCcccCeEEEEEEE
Confidence            555553 335788999999999999887 778999999998764211  11  111334689999999999999999999


Q ss_pred             eCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEecc----------CCCCceEEEeCCeeCCCCCccE
Q psy15128        115 SVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVG----------SPPPHIRWYKNGNSLPPEDTRI  184 (292)
Q Consensus       115 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~----------~p~~~~~W~~~~~~l~~~~~~~  184 (292)
                      +..+.......+.+..     .+.+...+....+..|+.+.|.|.+.+          .|.+.+.|++++..+.... ++
T Consensus        82 n~~g~~~~~~~l~v~~-----~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~-~~  155 (317)
T 2y25_A           82 DDRGKDKSRLKLVDEA-----FKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSD-RV  155 (317)
T ss_dssp             SSSCEEEEEECCSTHH-----HHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCS-SE
T ss_pred             CCCCcEEEEEEEEEec-----CccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCC-Ce
Confidence            8877654443333221     111111112233456666777776655          6888999999999887643 33


Q ss_pred             EEcCCC---cEEEEeeecCCCCCC--------------------------------------------------cceEEe
Q psy15128        185 NVSSSG---SLQIDVLRDDFRAEP--------------------------------------------------KDTRVA  211 (292)
Q Consensus       185 ~~~~~~---~l~i~~~~~~d~g~~--------------------------------------------------~~~~~~  211 (292)
                      .....+   .|.|.++..+|+|.|                                                  ....+.
T Consensus       156 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~  235 (317)
T 2y25_A          156 KTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQ  235 (317)
T ss_dssp             EEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEE
T ss_pred             EEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEE
Confidence            332222   499999999999822                                                  135788


Q ss_pred             CCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        212 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      +|+.+.|.|.+ .+.|.+.+.|+++|..+..  +.++.+....    .....|.|..+...|+|.|+|.|.|..|..+.
T Consensus       236 ~g~~~~l~C~~-~g~p~p~i~W~~~g~~~~~--~~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~  307 (317)
T 2y25_A          236 EGKALNLTCNV-WGDPPPEVSWLKNEKALAS--DDHCNLKFEA----GRTAYFTINGVSTADSGKYGLVVKNKYGSETS  307 (317)
T ss_dssp             TTSBBCEEEEE-ECSSCCEEEEEESSSEECC--CSSEEECCBT----TTEEEEEEBSCCSTTCEEEEEEEEETTEEEEE
T ss_pred             cCCEEEEEEEE-ecCCCCEEEEEECCEeCCC--CCcEEEEEcC----CCEEEEEECCCCHHHCEEEEEEEEeCCCeEEE
Confidence            99999999998 8999999999999999863  3344333221    01236889999999999999999999998764

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=6.8e-32  Score=218.02  Aligned_cols=245  Identities=19%  Similarity=0.247  Sum_probs=180.0

Q ss_pred             EEEeCCCcEEeCCCccEEecCCcEEEEEEEee-eCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEE
Q psy15128         31 LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFF  109 (292)
Q Consensus        31 l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y  109 (292)
                      |.|..+|.+...+....+.+|+.++|.|.+.+ .|.+.+.|++++..+.....   .......++.|.|.+++.+|+|.|
T Consensus         1 l~v~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~---~~~~~~~~~~L~i~~~~~~D~G~Y   77 (395)
T 1bih_A            1 LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEH---NAALRKDEGSLVFLRPQASDEGHY   77 (395)
T ss_dssp             ----CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTT---TEEECTTSCCEEESSCCGGGCEEE
T ss_pred             CCcCCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccc---eEEEecCCceEEEecCCCCCCcEE
Confidence            45778899988888899999999999999998 78889999999876632211   122233456899999999999999


Q ss_pred             EEEEEeCCcCee-EEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEe-ccCCCCceEEEeCC---eeCCCC---C
Q psy15128        110 VCSALSVAGSTT-VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA-VGSPPPHIRWYKNG---NSLPPE---D  181 (292)
Q Consensus       110 ~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~~~W~~~~---~~l~~~---~  181 (292)
                      +|.+.|..+... ..+.+.+.....  +..   .+....+.+|+.+.|.|.+ .+.|.+.+.|++++   .+....   .
T Consensus        78 ~C~a~n~~g~~~s~~~~l~v~~~~~--p~~---~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~  152 (395)
T 1bih_A           78 QCFAETPAGVASSRVISFRKTYLIA--SPA---KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFD  152 (395)
T ss_dssp             EEEEEETTEEEECCCEEEEEEEEEC--CCC---EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCC
T ss_pred             EEEEEeCCCeEEeEEEEEEEEEeec--CCc---CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCccccccccc
Confidence            999999776543 224444443221  211   1234456799999999996 78889999999986   222111   3


Q ss_pred             ccEEEcCCCcEEEEeeecCCCC---CC----------------------------------------cceEEeCCCceEE
Q psy15128        182 TRINVSSSGSLQIDVLRDDFRA---EP----------------------------------------KDTRVASGETALL  218 (292)
Q Consensus       182 ~~~~~~~~~~l~i~~~~~~d~g---~~----------------------------------------~~~~~~~g~~~~l  218 (292)
                      .++....++.|.|.++..+|+|   .|                                        ....+.+|+.+.|
T Consensus       153 ~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~l  232 (395)
T 1bih_A          153 RRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMI  232 (395)
T ss_dssp             TTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEEE
T ss_pred             ccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCceecCCceEEECCCcEEE
Confidence            4566677889999999999998   33                                        1345778999999


Q ss_pred             EeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccc
Q psy15128        219 ECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       219 ~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  289 (292)
                      .|.+ .+.|.+.+.|+++|..+......++.....     .....|.|..+...|+|.|+|.|.|..|...
T Consensus       233 ~C~~-~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  297 (395)
T 1bih_A          233 YCMY-GSNPMGYPNYFKNGKDVNGNPEDRITRHNR-----TSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ  297 (395)
T ss_dssp             EEEE-ECSSCCCCEEEETTEECCCCTTSSEESCSS-----STTSEEEESSCCGGGCEEEEEEECCSSSSCE
T ss_pred             EEEe-ccCCCCeEEEEECCEEcCCCCceeEEEEec-----CCCceEEEccCChhhCEEEEEEEEeCCCCce
Confidence            9998 899999999999999886444444432111     1123688999999999999999999999853

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.98  E-value=6.1e-31  Score=215.98  Aligned_cols=242  Identities=16%  Similarity=0.237  Sum_probs=163.7

Q ss_pred             cccCCcCCCeeEEEEEEeccccccc-------ccEEEEEeCC----CcEEeCCCccEEecCCcEEEEEEEeee-C--CCe
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERET-------KPALLTVHAP----PSFVVRPQDQKVGLNGIASFQCVAEGS-P--LPS   67 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~-------~~~~l~v~~~----p~~~~~~~~~~~~~g~~~~l~C~~~~~-~--~~~   67 (292)
                      |.+++.+|+|.|+|.+.|..|....       ....|.|...    |.+.   ....+.+|+.+.|.|.+.+. |  .+.
T Consensus       146 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~---~~~~v~~G~~v~l~C~~~g~~P~~~~~  222 (450)
T 1z7z_I          146 VLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLV---SPRVLEVDTQGTVVCSLDGLFPVSEAQ  222 (450)
T ss_dssp             EECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEE---CCSEEETTSEEEEEEEEESCTTGGGCE
T ss_pred             EEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEec---CceeEEeCCcEEEEEEeeCCCCCCceE
Confidence            6788999999999999998764332       2245555533    2221   12678899999999999987 6  679


Q ss_pred             eEEEECCeEEeeccCCCcceeEEeeec---EEEEccCCCCCCe--EEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeC
Q psy15128         68 VFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAG--FFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVG  142 (292)
Q Consensus        68 v~W~~~~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~g--~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~  142 (292)
                      +.|++++..+..       ......+.   .+.+ +++.+|.|  .|+|.+.|..+.......|.|..   .++|.+...
T Consensus       223 ~~W~~~~~~~~~-------~~~~~~~~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~---~~~p~i~~~  291 (450)
T 1z7z_I          223 VHLALGDQRLNP-------TVTYGNDSFSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS---FPAPNVILT  291 (450)
T ss_dssp             EEEEETTEECCC-------EEEEETTEEEEEEEE-ECCGGGCEEEEEEEEEEETTEEEEEEEEEEEEC---CCCCEEEES
T ss_pred             EEEeCCCEeCCc-------eEEecCCceeEEEEE-EeEhhhCCcEEEEEEEccCCccEEEEEEEEEec---CCCCeEecC
Confidence            999999987631       11111111   1222 77899999  99999999888777777777764   234555543


Q ss_pred             CCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCC-------------------
Q psy15128        143 PSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRA-------------------  203 (292)
Q Consensus       143 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g-------------------  203 (292)
                        ...+.+|+.++|.|.+.  |.+.+.|  +|.++....      ....|.|..+..+|+|                   
T Consensus       292 --~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~  359 (450)
T 1z7z_I          292 --KPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG------PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQ  359 (450)
T ss_dssp             --CSEEETTCEEEEEEEC--------------------C------CCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEE
T ss_pred             --CeeEeCCCcEEEEEecC--CCCEeEE--CCEEcCCCC------ceEEEEEecCcccCCceEEEEEEcCCCCcccccce
Confidence              44788999999999997  8889999  777762211      2236777777777777                   


Q ss_pred             ----------------CCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccc
Q psy15128        204 ----------------EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGS  267 (292)
Q Consensus       204 ----------------~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~  267 (292)
                                      .+....+.+|+.+.|.|.+ .|.|.|.+.|+++|..+..          .+.       .+   
T Consensus       360 ~~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~-~g~P~p~i~W~~~g~~~~~----------~g~-------~~---  418 (450)
T 1z7z_I          360 TRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQA-WGNPLPELKCLKDGTFPLP----------IGE-------SV---  418 (450)
T ss_dssp             EEECEEEEEEECCSTTSCSEEEEETTCEECCCCCC-EEESCCEEEEEETTTEECC----------TTS-------CE---
T ss_pred             eEEEEEecCCceeeccCCCceeEcCCCeEEEEEec-ccCCCCcEEEEECCcccCC----------CCC-------eE---
Confidence                            1245578899999999998 8999999999999874421          110       11   


Q ss_pred             cccccccceeEEEEeeccccccc
Q psy15128        268 VLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       268 ~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      .+..+|+|.|+|.|.|.+|.++.
T Consensus       419 ~v~~~d~G~Y~C~a~N~~G~~~~  441 (450)
T 1z7z_I          419 TVTRDLEGTYLCRARSTQGEVTR  441 (450)
T ss_dssp             ECCGGGCEEEEEEEEETTEEEEE
T ss_pred             eEehhhCeEEEEEEEeCCCceeE
Confidence            46678999999999999999865

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.98  E-value=8.6e-33  Score=218.80  Aligned_cols=251  Identities=16%  Similarity=0.160  Sum_probs=180.3

Q ss_pred             eCCCcEEeCCCccEEecCCcEEEEEEEe-------eeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCC
Q psy15128         34 HAPPSFVVRPQDQKVGLNGIASFQCVAE-------GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDA  106 (292)
Q Consensus        34 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~-------~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  106 (292)
                      ...|.+...+....+.+|+.+.|.|.+.       +.|.+.+.|++++..+..... ...+. ...++.|.|.+++.+|+
T Consensus        16 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~-~~~~~-~~~~~~L~i~~v~~~D~   93 (339)
T 3o4o_C           16 RSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGE-EETRM-WAQDGALWLLPALQEDS   93 (339)
T ss_dssp             --CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCC-SSSCE-EEETTEEEESSBCTTCC
T ss_pred             hhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCcc-ccccE-EeeCCeEEECCCCcccC
Confidence            3467788888889999999999999997       778889999999876432221 12222 24467899999999999


Q ss_pred             eEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeE-----eccCCCCceEEEeCCeeCCCCC
Q psy15128        107 GFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQ-----AVGSPPPHIRWYKNGNSLPPED  181 (292)
Q Consensus       107 g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~-----~~~~p~~~~~W~~~~~~l~~~~  181 (292)
                      |.|+|.+.+..+.......|.|....   ............+.+|+.+.|.|.     +.+.|.+.+.|++++..+....
T Consensus        94 G~Y~C~~~n~~g~~~~~~~l~V~~~~---~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~  170 (339)
T 3o4o_C           94 GTYVCTTRNASYCDKMSIELRVFENT---DAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDN  170 (339)
T ss_dssp             EEEECCEEETTEEEEEEEEEEEECSC---GGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTC
T ss_pred             EEEEEEEECCcceEEEEEEEEEEcCC---CccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCC
Confidence            99999999988766666666665321   111011112235789999999999     7788899999999999988765


Q ss_pred             ccEEEcCC-CcEEEEeeecCCCCCC--------------------------------------cceEEeCCCceEEEeeC
Q psy15128        182 TRINVSSS-GSLQIDVLRDDFRAEP--------------------------------------KDTRVASGETALLECGP  222 (292)
Q Consensus       182 ~~~~~~~~-~~l~i~~~~~~d~g~~--------------------------------------~~~~~~~g~~~~l~C~~  222 (292)
                      .++..... +.|.|.++..+|+|.|                                      ....+.+|+.+.|.|.+
T Consensus       171 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~  250 (339)
T 3o4o_C          171 EKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKV  250 (339)
T ss_dssp             SSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCE
T ss_pred             ceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEE
Confidence            55555444 4799999888888821                                      22245679999999997


Q ss_pred             C--CCCC-CCeEEEeEcCeEeccCCC-------ceEEecCCCcccccccccccccccccccc-ceeEEEEeecccccccC
Q psy15128        223 P--KGQP-EPTLHWKKNGQFIDLESS-------KRVSILGDPWFDSRRSRSIFGSVLGALSD-DQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       223 ~--~~~p-~~~~~W~~~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~-g~y~C~a~n~~g~~~~~  291 (292)
                      .  .+.| .+.+.|+++|..+.....       .++....++...  ....|.|..+..+|. |.|+|.|+|.+|+++..
T Consensus       251 ~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~  328 (339)
T 3o4o_C          251 FLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENY--IEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLR  328 (339)
T ss_dssp             EESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCE--EEECCEECSSCCCSCCCCCEEEEEETTEEECCB
T ss_pred             ECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceE--EEEEEEEEEechhhcCccEEEEEEeccCceEEE
Confidence            3  5667 889999999987742211       112222221110  112688999999997 99999999999998764

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.98  E-value=6.4e-32  Score=222.11  Aligned_cols=281  Identities=15%  Similarity=0.192  Sum_probs=172.8

Q ss_pred             cccCCcCCCeeEEEEEEeccc---------c--cccccEEEEEeC----CCcEEeCCCccEEecCCcEEEEEEEeee-CC
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVG---------E--RETKPALLTVHA----PPSFVVRPQDQKVGLNGIASFQCVAEGS-PL   65 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~---------~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~   65 (292)
                      |.+++.+|+|.|+|.+.+..+         .  .....+.|.|..    +|.+...+....+.+|+.++|.|.+.+. |.
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~  162 (457)
T 1hzh_H           83 LRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE  162 (457)
T ss_dssp             ECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSC
T ss_pred             ECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCC
Confidence            789999999999999998764         1  222337788865    4555444434456789999999999886 64


Q ss_pred             -CeeEEEECCeEEeec--cC--CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeec--------
Q psy15128         66 -PSVFWTQEGSQVLMF--PG--NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVE--------  132 (292)
Q Consensus        66 -~~v~W~~~~~~~~~~--~~--~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~--------  132 (292)
                       +.+.|++++..+...  ..  ...+.  ......|.|.++..+| |.|+|.+.|..+.......+.+....        
T Consensus       163 ~~~v~W~k~~~~~~~~~~~~~~~~~~~--~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~  239 (457)
T 1hzh_H          163 PVTVSWNSGALTSGVHTFPAVLQSSGL--YSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPC  239 (457)
T ss_dssp             CCEEEETTTTBCTTEEEEEEEECTTSC--EEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSC
T ss_pred             CeEEEEEeCCEeccceEcCceECCCCC--EEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCCC
Confidence             789999988532100  00  00111  1223479999999999 99999999977665544433322100        


Q ss_pred             ----CCCCCeE-EeCCCCce-ecCCCeEEEEeEeccCCCC----ceEEEeCCeeCCCCCcc-EEEcCCCcEEEEeee---
Q psy15128        133 ----DTPPPIV-QVGPSNQT-LPLHSVAFLPCQAVGSPPP----HIRWYKNGNSLPPEDTR-INVSSSGSLQIDVLR---  198 (292)
Q Consensus       133 ----~~~~~~~-~~~~~~~~-~~~g~~v~l~C~~~~~p~~----~~~W~~~~~~l~~~~~~-~~~~~~~~l~i~~~~---  198 (292)
                          ...+|.+ ...+.... +.+|+.++|.|.+.+.|++    .+.|++++.++...... .....++.|.+....   
T Consensus       240 ~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~  319 (457)
T 1hzh_H          240 PAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVL  319 (457)
T ss_dssp             CCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCC
T ss_pred             CCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEEC
Confidence                0112333 33333332 5689999999999887543    89999999887542211 112234455444322   


Q ss_pred             cCC---CCCC--------------------------cceEEe-------CCCceEEEeeCCCCC-CC-CeEEEeEcCeEe
Q psy15128        199 DDF---RAEP--------------------------KDTRVA-------SGETALLECGPPKGQ-PE-PTLHWKKNGQFI  240 (292)
Q Consensus       199 ~~d---~g~~--------------------------~~~~~~-------~g~~~~l~C~~~~~~-p~-~~~~W~~~g~~~  240 (292)
                      ..|   +|.|                          +.+.+.       .+..+.|.|.+ .|. |+ +.|.|+++|+++
T Consensus       320 ~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~l~C~~-~g~~p~~~~v~W~k~g~~l  398 (457)
T 1hzh_H          320 HQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLV-KGFYPSDIAVEWESNGQPE  398 (457)
T ss_dssp             HHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECCCGGGGGSSEEEEEEEE-EEEBSSCCEEEEEETTEEC
T ss_pred             HHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECCCccccCCCcEEEEEEE-EeEECCCCEEEEEECCEEC
Confidence            223   4411                          111111       23349999998 664 43 399999999988


Q ss_pred             ccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128        241 DLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      ............++.+..  ...|.+......|.|.|+|.|+|.....
T Consensus       399 ~~~~~~~~~~~~~g~~~~--~s~l~i~~~~~~~~g~YtC~a~n~~l~~  444 (457)
T 1hzh_H          399 NNYKTTPPVLDSDGSFFL--YSKLTVDKSRWQQGNVFSCSVMHEALHN  444 (457)
T ss_dssp             CCEEECCCEECTTSCEEE--EEEEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred             cceeecCceeCCCCCEEE--EEEEEEChHHccCCCeEEEEEEECCCCC
Confidence            532222233334443332  1234455555578999999999986543

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.98  E-value=2.5e-31  Score=205.73  Aligned_cols=234  Identities=15%  Similarity=0.165  Sum_probs=168.1

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      +|.+...+....+.+|+.++|.|.+.+    .+.|++++.....       .........|.|.+++.+|+|.|+|.+.+
T Consensus         4 ~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~~-------~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   72 (289)
T 3ejj_X            4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWT-------LDPESPGSTLTTRNATFKNTGTYRCTELE   72 (289)
T ss_dssp             CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSSE-------ECCCSSCCEEEESSCCGGGCEEEEEECCC
T ss_pred             CcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceEE-------EeccCCccEEEEeeeccccCEEEEEEEec
Confidence            455555666778899999999999876    5999977643210       01112346899999999999999999988


Q ss_pred             CCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCc-eEEEe-CCeeCCCCCccEEEcCCCcEE
Q psy15128        116 VAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH-IRWYK-NGNSLPPEDTRINVSSSGSLQ  193 (292)
Q Consensus       116 ~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~-~~W~~-~~~~l~~~~~~~~~~~~~~l~  193 (292)
                      ..+.......|.|..    ++..+...+....+.+|+.+.|.|.+.+.+.+. +.|++ ++..+.. ..++....++.|.
T Consensus        73 ~~~~~~~~~~l~V~~----~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~L~  147 (289)
T 3ejj_X           73 DPMAGSTTIHLYVKD----PAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLR-KTVYFFSPWRGFI  147 (289)
T ss_dssp             -----CEEEEEEECC----SSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCT-TCCEEEETTTEEE
T ss_pred             cCCcceeEEEEEEeC----CCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCC-CccEEECCCCCEE
Confidence            777666666666653    233355566777889999999999998876665 99986 5666554 3556666777899


Q ss_pred             EEeeecCCCCCC----------------------------------cceEEeCCCceEEEeeCCCC-CCCCeEEEeEcCe
Q psy15128        194 IDVLRDDFRAEP----------------------------------KDTRVASGETALLECGPPKG-QPEPTLHWKKNGQ  238 (292)
Q Consensus       194 i~~~~~~d~g~~----------------------------------~~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~g~  238 (292)
                      |.++..+|+|.|                                  ....+.+|+.+.|.|.+ .+ .|.+.+.|+++|.
T Consensus       148 i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~-~~~~p~~~i~W~~~~~  226 (289)
T 3ejj_X          148 IRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSA-TNAEVGFNVILKRGDT  226 (289)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEE-EESSSCCEEEEEETTE
T ss_pred             EeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEe-CCCCCceEEEEEECCE
Confidence            999999888821                                  22334589999999998 55 8999999999999


Q ss_pred             EeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        239 FIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      .+..  ...........   .....|.|..+..+|+|.|+|.|+|..|+++.+
T Consensus       227 ~~~~--~~~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s  274 (289)
T 3ejj_X          227 KLEI--PLNSDFQDNYY---KKVRALSLNAVDFQDAGIYSCVASNDVGTRTAT  274 (289)
T ss_dssp             ECCC--CEEEEECSSSE---EEEEEEEESSCCSSSCEEEEEEEECSSCEEEEE
T ss_pred             Eeec--cCCcccccceE---EeeEEEEEEeecccCCEEEEEEEEcCCCCcccc
Confidence            8852  22222111111   123368899999999999999999999998764

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.98  E-value=3.6e-31  Score=214.40  Aligned_cols=243  Identities=22%  Similarity=0.319  Sum_probs=177.7

Q ss_pred             EEEeCCCcEEe-CCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEc----cCCCCC
Q psy15128         31 LTVHAPPSFVV-RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQ----GVQKED  105 (292)
Q Consensus        31 l~v~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~----~~~~~d  105 (292)
                      ..+..+|.+.. .+....+.+|+.++|.|.+.|.|.+.+.|+|++..+........  .....++.|.|.    +++.+|
T Consensus        11 ~~~~~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~--~~~~~~~~l~i~~~~~~~~~~D   88 (404)
T 3p3y_A           11 NELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRV--SMRRRSGTLVIDFRSGGRPEEY   88 (404)
T ss_dssp             --CCCCCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSC--BCCSSSCCCBCCCTTTCCTTSS
T ss_pred             hhccCCCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcc--eEecCCceEEEEeccCCCCccC
Confidence            34456777775 45677899999999999999999999999999987643222111  111234455554    788899


Q ss_pred             CeEEEEEEEeCCcCee-EEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEe-ccCCCCceEEEeCCeeCCCCCcc
Q psy15128        106 AGFFVCSALSVAGSTT-VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA-VGSPPPHIRWYKNGNSLPPEDTR  183 (292)
Q Consensus       106 ~g~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~~~W~~~~~~l~~~~~~  183 (292)
                      +|.|+|.+.|..+... ..+.|.|..    ++......+....+.+|+.+.|.|.+ .+.|.+.+.|++++........+
T Consensus        89 ~G~Y~C~a~n~~g~~~s~~~~l~V~~----~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~  164 (404)
T 3p3y_A           89 EGEYQCFARNKFGTALSNRIRLQVSK----SPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKR  164 (404)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEECC----CCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSS
T ss_pred             CEEEEEEEEcCCCeEeeeeEEEEEec----cCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCc
Confidence            9999999999877653 344555542    22222233345678899999999998 77888999999988665555567


Q ss_pred             EEEcCCCcEEEEeeecCC-CCCC------------------------------------------cceEEeCCCceEEEe
Q psy15128        184 INVSSSGSLQIDVLRDDF-RAEP------------------------------------------KDTRVASGETALLEC  220 (292)
Q Consensus       184 ~~~~~~~~l~i~~~~~~d-~g~~------------------------------------------~~~~~~~g~~~~l~C  220 (292)
                      +....++.|.|.++..+| +|.|                                          ....+.+|+.+.|.|
T Consensus       165 ~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C  244 (404)
T 3p3y_A          165 VSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLEC  244 (404)
T ss_dssp             EEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEEC
T ss_pred             EEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEE
Confidence            777778899999999998 4722                                          123477899999999


Q ss_pred             eCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        221 GPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       221 ~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      .+ .+.|.+.+.|+++|..+...  ......        ....|.|..+..+|+|.|+|.|.|..|..+.
T Consensus       245 ~~-~g~p~~~v~W~~~~~~~~~~--~~~~~~--------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  303 (404)
T 3p3y_A          245 IA-SGVPTPDIAWYKKGGDLPSD--KAKFEN--------FNKALRITNVSEEDSGEYFCLASNKMGSIRH  303 (404)
T ss_dssp             CB-CCSSCCEEEEEETTBCCCTT--TEEEEG--------GGTEEEESSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             EE-CCCCCCcEEEEECCEECCCC--cccccc--------cCceEEEccCCHhHCEEEEEEEEeCCCcEEE
Confidence            98 89999999999999987522  221111        1236889999999999999999999998653

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.97  E-value=2.2e-31  Score=206.18  Aligned_cols=228  Identities=17%  Similarity=0.230  Sum_probs=168.2

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      .+|.+...+....+.+|+.++|.|.+.+    .+.|++++..+.         ......+.|.|.+++.+|+|.|+|.+.
T Consensus        11 ~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~~---------~~~~~~~~L~i~~~~~~d~G~Y~C~~~   77 (290)
T 2o26_X           11 SPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNE---------MVENKKNEWIQEKAEATRTGTYTCSNS   77 (290)
T ss_dssp             -CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSSC---------EEEECSSEEEETTCCGGGCEEEEEEES
T ss_pred             CCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCccee---------eecCCCceEEEeccCHHhCeEEEEEee
Confidence            4566666677788999999999999976    899999987541         112223789999999999999999999


Q ss_pred             eCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCC-CceEEE-eCCeeCCCCCccEEEcCCCcE
Q psy15128        115 SVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPP-PHIRWY-KNGNSLPPEDTRINVSSSGSL  192 (292)
Q Consensus       115 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~-~~~~W~-~~~~~l~~~~~~~~~~~~~~l  192 (292)
                      |  +. ...+.|.|..    ++..+ ..+....+.+|+.+.|.|.+.+ |. +.+.|+ ++|..+... .++.....+.|
T Consensus        78 n--g~-~~~~~l~V~~----~~~~~-~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~-~~~~~~~~~~L  147 (290)
T 2o26_X           78 N--GL-TSSIYVFVRD----PAKLF-LVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTD-LTFVPNPKAGI  147 (290)
T ss_dssp             S--SC-EEEEEEEEEC----SSCCB-CCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTT-CEEEEETTTEE
T ss_pred             C--Cc-cEEEEEEEeC----CCccc-ccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCC-CceeeCCCCCE
Confidence            8  33 5555566553    12222 4566677889999999999985 77 889995 688777653 55556666789


Q ss_pred             EEEeeecCCCC-CC----------------------------------cceEEeCCCceEEEeeCCCCCCCCe-EEEeEc
Q psy15128        193 QIDVLRDDFRA-EP----------------------------------KDTRVASGETALLECGPPKGQPEPT-LHWKKN  236 (292)
Q Consensus       193 ~i~~~~~~d~g-~~----------------------------------~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~  236 (292)
                      .|.++..+|+| .|                                  ....+.+|+.+.|.|.+ .+.|.+. +.|+++
T Consensus       148 ~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~-~g~p~p~~i~W~~~  226 (290)
T 2o26_X          148 TIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTI-KDVSTSVNSMWLKM  226 (290)
T ss_dssp             EEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEE-EESSTTCEEEEEEE
T ss_pred             EEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEE-ecCCcceeEEEecC
Confidence            99999999999 43                                  12235679999999998 7889886 999999


Q ss_pred             CeEe----ccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        237 GQFI----DLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       237 g~~~----~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      |..+    .........  ..  +.......|.|..+..+|+|.|+|.|.|..|.++.
T Consensus       227 ~~~~~~~~~~~~~~~~~--~~--~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~  280 (290)
T 2o26_X          227 NPQPQHIAQVKHNSWHR--GD--FNYERQETLTISSARVDDSGVFMCYANNTFGSANV  280 (290)
T ss_dssp             SSSEEECCCEECCEEEE--ET--TEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEE
T ss_pred             CCCCccceeeccccccc--Cc--eeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEE
Confidence            8773    211211111  11  11122347999999999999999999999998864

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.97  E-value=2.1e-31  Score=214.20  Aligned_cols=234  Identities=21%  Similarity=0.309  Sum_probs=166.6

Q ss_pred             CcEEeCCCccEE---ecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccC-CCCCCeEEEEE
Q psy15128         37 PSFVVRPQDQKV---GLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGV-QKEDAGFFVCS  112 (292)
Q Consensus        37 p~~~~~~~~~~~---~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~Y~C~  112 (292)
                      |.+...|....+   .+|+.+.|.|.+.|.|.|.+.|+|++..+.....   .+.. ..++.|.|.+. ..+|+|.|+|.
T Consensus         6 P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~---~~~~-~~~g~l~i~~~~~~~D~G~Y~C~   81 (384)
T 3kld_A            6 PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMD---FRYS-VVDGSLLINNPNKTQDAGTYQCI   81 (384)
T ss_dssp             EEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC-------CEE-EETTEEEEESCCHHHHCEEEEEE
T ss_pred             CEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCCCC---ccEE-EECCEEEEcCCCCcccCEEEEEE
Confidence            455556655554   4789999999999999999999999987642211   1222 23556777765 78899999999


Q ss_pred             EEeCCcCee-EEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEec-cCCCCceEEEeCCeeCCCCCccEEEcCCC
Q psy15128        113 ALSVAGSTT-VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPPEDTRINVSSSG  190 (292)
Q Consensus       113 ~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~~~W~~~~~~l~~~~~~~~~~~~~  190 (292)
                      |.|..|... ....+.+....    ...........+.+|+.+.|.|... +.|.+.+.|++++.++.....++.....+
T Consensus        82 A~N~~G~~~s~~~~l~v~~~~----~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~  157 (384)
T 3kld_A           82 ATNSFGTIVSREAKLQFAYLE----NFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG  157 (384)
T ss_dssp             EEETTEEEECCCEEEEEEEEC----CCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTTC
T ss_pred             EEcCcccEEecceEEEEeccc----ccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCCC
Confidence            999877542 23444443221    1111123445678999999999764 44678899999998886554555555677


Q ss_pred             cEEEEeeecCCCCCC----------------------------------------cceEEeCCCceEEEeeCCCCCCCCe
Q psy15128        191 SLQIDVLRDDFRAEP----------------------------------------KDTRVASGETALLECGPPKGQPEPT  230 (292)
Q Consensus       191 ~l~i~~~~~~d~g~~----------------------------------------~~~~~~~g~~~~l~C~~~~~~p~~~  230 (292)
                      .|.|.++..+|+|.|                                        ....+.+|+.+.|.|.+ .|.|.|.
T Consensus       158 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~-~g~P~p~  236 (384)
T 3kld_A          158 NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFA-LGNPVPT  236 (384)
T ss_dssp             CEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEE-EEESCCE
T ss_pred             cEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEE-eecCCCc
Confidence            899999999999933                                        12345689999999998 8999999


Q ss_pred             EEEeEc-CeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        231 LHWKKN-GQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       231 ~~W~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      +.|+++ +..+.  ...+.. .        ....|.|..+..+|+|.|+|.|.|..|....
T Consensus       237 i~W~k~~~~~~~--~~~~~~-~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~  286 (384)
T 3kld_A          237 ILWRRADGKPIA--RKARRH-K--------SNGILEIPNFQQEDAGSYECVAENSRGKNVA  286 (384)
T ss_dssp             EEEEETTCCCCC--TTCEEC-T--------TSCEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             EEEEeCCCcccc--ccceec-C--------CCcEEEECCCChhhCEEEEEEEEcCCCeEEE
Confidence            999994 55553  111111 1        1226889999999999999999999998653

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.97  E-value=2.9e-31  Score=215.06  Aligned_cols=266  Identities=12%  Similarity=0.115  Sum_probs=143.9

Q ss_pred             cCCCeeEEEEEEeccccccccc---EE---------EEEeCC---CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEE
Q psy15128          7 KSDEGKYQCYVQNMVGERETKP---AL---------LTVHAP---PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWT   71 (292)
Q Consensus         7 ~~D~G~Y~C~~~~~~~~~~~~~---~~---------l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~   71 (292)
                      -.|.|.|+|...+......+..   ..         |.....   +.++..+....+.+|+++.|.|.+.+.|.+.+.|+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~c~~~p~~~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~   83 (423)
T 3qs7_E            4 NQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWV   83 (423)
T ss_dssp             ----------------------------------------------------CEEEECSSCCEEEEEECSCCSSCEEEEE
T ss_pred             cCCCCeeEEEEEeccCCCccccccccchhhhCCHHHcCCccCCCCCcceeccccEEEecCCcEEEEEEEEcCCCCeEEEE
Confidence            4688999999986533321111   12         211111   23445566788999999999999999999999999


Q ss_pred             ECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCC
Q psy15128         72 QEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLH  151 (292)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g  151 (292)
                      +++..+.....  . .........|.|.+++.+|+|.|+|.|.|..+.....+.|.|..     +|.+.. .....+..|
T Consensus        84 ~~~~~l~~~~~--~-~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~-----~p~~~~-~~p~~~~~~  154 (423)
T 3qs7_E           84 FKHSSLNCQPH--F-DLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRN-----TLLYTL-RRPYFRKME  154 (423)
T ss_dssp             ETTEEECCCCB--C------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC----------CE-EEEEEEECS
T ss_pred             ECCCccCccce--e-ccccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEec-----Cccccc-cCCcEeccC
Confidence            99876532110  0 00011123699999999999999999999888766666666542     222211 111224568


Q ss_pred             CeEEEEeEeccCCCCceEEEeCCeeCCCCC----ccE-------EEcCCCcEEEEeee---------------cCCCCCC
Q psy15128        152 SVAFLPCQAVGSPPPHIRWYKNGNSLPPED----TRI-------NVSSSGSLQIDVLR---------------DDFRAEP  205 (292)
Q Consensus       152 ~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~----~~~-------~~~~~~~l~i~~~~---------------~~d~g~~  205 (292)
                      +.+.|.|.+.|.|.|.+.|++++..+....    ..+       .....|.+.+....               ......+
T Consensus       155 ~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~~~  234 (423)
T 3qs7_E          155 NQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTL  234 (423)
T ss_dssp             SSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCSST
T ss_pred             CceEEEEEEeeecCCeEEEEECCCCCccccccccccccccceEEecccCeEEEEEEEcCCCCcceeeEEEEEecCCccCC
Confidence            888999999999999999999877543210    000       00111222222110               0011133


Q ss_pred             cceEEeCCCceEEEeeCCCC-CCCCeEEEeEcCeEeccCCCce-EEecCCCccccccccccccccccccccceeEEEEee
Q psy15128        206 KDTRVASGETALLECGPPKG-QPEPTLHWKKNGQFIDLESSKR-VSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN  283 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n  283 (292)
                      ....+.+|+.+.|.|.+ .+ .|.+.|.|+++|..+....... ........  ......|.|..+..+|+|.|+|.|.|
T Consensus       235 ~~~~v~~G~~v~L~C~~-~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~A~N  311 (423)
T 3qs7_E          235 PQLFLKVGEPLWIRCKA-VHVNHGFGLTWELENKALEEGNYFEMSTYSTNRT--MIRILFAFVSSVARNDTGYYTCSSSK  311 (423)
T ss_dssp             TEEEEETTSCEEEEEEE-EESSSCCCEEEEESSSBCCGGGEEEEEEEETTTE--EEEEEEEEESSCCTTTCEEEEEEETT
T ss_pred             CceEEeCCCeEEEEEEE-EcCCCCcEEEEEECCEEccccceeecccccCCce--eEEEEEEEEeecCHHHCEEEEEEEec
Confidence            45678899999999999 66 7789999999998874221110 11111110  11223589999999999999999999


Q ss_pred             c
Q psy15128        284 I  284 (292)
Q Consensus       284 ~  284 (292)
                      .
T Consensus       312 ~  312 (423)
T 3qs7_E          312 H  312 (423)
T ss_dssp             E
T ss_pred             C
Confidence            8

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.97  E-value=2.9e-32  Score=215.35  Aligned_cols=241  Identities=18%  Similarity=0.333  Sum_probs=107.7

Q ss_pred             CCCccEEecCCcEEEEEEEeee-CCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      .+....+.+|+.+.|.|.+.+. |.+.+.|++++..+...     .+.. ..++.|.|.+++.+|+|.|+|.+.+. +..
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~-----~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~   86 (334)
T 1ry7_B           14 QQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPS-----ERVL-VGPQRLQVLNASHEDSGAYSCRQRLT-QRV   86 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCc-----ccEE-eccceEEEeecccccCEEEEEEEEeC-CeE
Confidence            3667788999999999999876 57899999998766321     1121 23568999999999999999999987 555


Q ss_pred             eEEEEEEEEeecCC-----------------CCCeEEe----CCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCC
Q psy15128        121 TVRAFLQVTSVEDT-----------------PPPIVQV----GPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP  179 (292)
Q Consensus       121 ~~~~~l~v~~~~~~-----------------~~~~~~~----~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~  179 (292)
                      .....|.|......                 .+|.+..    .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus        87 ~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~  166 (334)
T 1ry7_B           87 LCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRG  166 (334)
T ss_dssp             --------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCT
T ss_pred             EEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcc
Confidence            55555555432110                 0122211    11224577899999999999999999999999988865


Q ss_pred             CCcc--E-EEcCCCcEEEEeeecCCCCC----------------------------------CcceEEeCCCceEEEeeC
Q psy15128        180 EDTR--I-NVSSSGSLQIDVLRDDFRAE----------------------------------PKDTRVASGETALLECGP  222 (292)
Q Consensus       180 ~~~~--~-~~~~~~~l~i~~~~~~d~g~----------------------------------~~~~~~~~g~~~~l~C~~  222 (292)
                      ....  . .......|.|.++..+|+|.                                  +....+.+|+.+.|.|.+
T Consensus       167 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~  246 (334)
T 1ry7_B          167 EHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV  246 (334)
T ss_dssp             TSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCC
T ss_pred             cccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEE
Confidence            4321  1 11234478899999999882                                  134567889999999998


Q ss_pred             CCCCCCCeEEEeE----cCeEeccCCCceEEecCCCccc--cccccccccccccccccceeEEEEeeccccccc
Q psy15128        223 PKGQPEPTLHWKK----NGQFIDLESSKRVSILGDPWFD--SRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       223 ~~~~p~~~~~W~~----~g~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                       .+.|.+.+.|++    +|..+.......+.........  ......|.|..+...|+|.|+|.|.|..|.+..
T Consensus       247 -~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  319 (334)
T 1ry7_B          247 -YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHH  319 (334)
T ss_dssp             -BCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEE
T ss_pred             -ecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEE
Confidence             889999999999    7777753332222222221111  111236889999999999999999999998764

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.97  E-value=1e-29  Score=200.17  Aligned_cols=244  Identities=17%  Similarity=0.328  Sum_probs=154.8

Q ss_pred             cEEeCCCccEEecCCcEEEEEEEeee-CCCeeEEEECCeE----EeeccCCCcceeEE--------eeecEEEEccCCCC
Q psy15128         38 SFVVRPQDQKVGLNGIASFQCVAEGS-PLPSVFWTQEGSQ----VLMFPGNAYGHLHV--------TQEGTLRIQGVQKE  104 (292)
Q Consensus        38 ~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~v~W~~~~~~----~~~~~~~~~~~~~~--------~~~~~l~i~~~~~~  104 (292)
                      .+...+....+.+|+.+.|.|.+.+. |.+.+.|+|++..    +....+....+...        .....|.|.+++.+
T Consensus         5 ~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~   84 (327)
T 2wng_A            5 QVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPA   84 (327)
T ss_dssp             CEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGG
T ss_pred             EEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccc
Confidence            34455667889999999999999887 8889999998743    11111111122221        23457999999999


Q ss_pred             CCeEEEEEEEeCCcCee-----EEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCC--ceEEEeCCeeC
Q psy15128        105 DAGFFVCSALSVAGSTT-----VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP--HIRWYKNGNSL  177 (292)
Q Consensus       105 d~g~Y~C~~~~~~~~~~-----~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~--~~~W~~~~~~l  177 (292)
                      |+|.|+|.+.+..+...     ....|.|..  ...++.+. .+ ...+.+|+.+.|.|.+.+.|++  .+.|+++|.++
T Consensus        85 D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~--~p~~p~i~-~~-~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l  160 (327)
T 2wng_A           85 DAGTYYCVKFRKGSPDTEFKSGAGTELSVRA--KPSAPVVS-GP-AARATPQHTVSFTCESHGFSPRDITLKWFKNGNEL  160 (327)
T ss_dssp             GCEEEEEEEEESSTTCEEEEECCCEEEEEEB--CCCCCEEE-CC-SSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             cCeEEEEEeecCCCcceeEeecCcEEEEEEe--cCCCceee-cc-ccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEc
Confidence            99999999998755421     223455543  22333443 33 3567899999999999888665  89999999988


Q ss_pred             CCCCccEEEc-CCC------cEEEEeeecCCCCCC---------------------------cceE-----EeCCCceEE
Q psy15128        178 PPEDTRINVS-SSG------SLQIDVLRDDFRAEP---------------------------KDTR-----VASGETALL  218 (292)
Q Consensus       178 ~~~~~~~~~~-~~~------~l~i~~~~~~d~g~~---------------------------~~~~-----~~~g~~~~l  218 (292)
                      .......... .++      .|.|.....+|.|.|                           +...     +.+|+.+.|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~G~~v~l  240 (327)
T 2wng_A          161 SDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNV  240 (327)
T ss_dssp             CCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEECCSSTTCCEE
T ss_pred             cccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCCcCCCCcEEE
Confidence            7543211111 112      233443333444511                           1111     348999999


Q ss_pred             EeeCCCC-CCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128        219 ECGPPKG-QPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       219 ~C~~~~~-~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      .|.+ .+ .|++ .+.|+++|+++.......+....++.+..  ...|.|..+..+|+|.|+|.|+|..|.+
T Consensus       241 ~C~~-~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~--~~~L~i~~~~~~d~G~Y~C~a~N~~~~~  309 (327)
T 2wng_A          241 TCQV-RKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNW--MSWLLVNVSAHRDDVKLTCQVEHDGQPA  309 (327)
T ss_dssp             EEEE-EEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEE--EEEEEC-------CCEEEEEEEETTCCC
T ss_pred             EEEE-ccccCCCcEEEEEECCeEccCcccCceEECCCCcEEE--EEEEEEccccccCCCEEEEEEEeCCCCC
Confidence            9998 66 4554 89999999998643333344444443321  1257788889999999999999999975

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.97  E-value=3.1e-32  Score=222.51  Aligned_cols=282  Identities=15%  Similarity=0.174  Sum_probs=177.1

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeC----CCcEEeCCCccEEecCCcEEEEEEEeee-CCC-eeEEEECCe
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA----PPSFVVRPQDQKVGLNGIASFQCVAEGS-PLP-SVFWTQEGS   75 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~~   75 (292)
                      |.+++.+|+|.|+|.+.+..+..... +.|.|..    +|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++++.
T Consensus        82 I~~v~~~D~G~Y~C~~~~~~~~~~~~-~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~  160 (434)
T 1igy_B           82 LSSLTSDDSAVYYCVREGEVPYWGQG-TTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  160 (434)
T ss_dssp             ECSBCGGGCSEECCCCSSSSCCCCCC-EECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTB
T ss_pred             ECCCChHHCEEEEEEEEccccccCCc-eEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCc
Confidence            78999999999999998854333333 7788863    4544433333345789999999999886 666 999999886


Q ss_pred             EEeeccCCC-cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEee--------cCCCCCeEEeCCCCc
Q psy15128         76 QVLMFPGNA-YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSV--------EDTPPPIVQVGPSNQ  146 (292)
Q Consensus        76 ~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~--------~~~~~~~~~~~~~~~  146 (292)
                      .+....... .........+.|.|.++..+| |.|+|.+.|..+.......+.+...        ....+.+....+...
T Consensus       161 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~  239 (434)
T 1igy_B          161 SSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPK  239 (434)
T ss_dssp             CSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHH
T ss_pred             CCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChH
Confidence            421100000 000112234579999999888 9999999998887544444332100        000123333333322


Q ss_pred             e-ecCCCeEEEEeEeccCC----CCceEEEeCCeeCCCCCccEE-------EcCCCcEEEEeeecCCCCCC---------
Q psy15128        147 T-LPLHSVAFLPCQAVGSP----PPHIRWYKNGNSLPPEDTRIN-------VSSSGSLQIDVLRDDFRAEP---------  205 (292)
Q Consensus       147 ~-~~~g~~v~l~C~~~~~p----~~~~~W~~~~~~l~~~~~~~~-------~~~~~~l~i~~~~~~d~g~~---------  205 (292)
                      . +.+|+.+.|.|.+.+.+    .+.+.|++++..+........       ....+.|.|.++..+|+|.|         
T Consensus       240 ~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~  319 (434)
T 1igy_B          240 DTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAF  319 (434)
T ss_dssp             HHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSC
T ss_pred             HhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCC
Confidence            2 78999999999998873    357999999887653211000       11234688888887787722         


Q ss_pred             -----------------cceEE-------eCCCceEEEeeCCCC-CCC-CeEEEeEcCeEeccCCCceEEecCCCccccc
Q psy15128        206 -----------------KDTRV-------ASGETALLECGPPKG-QPE-PTLHWKKNGQFIDLESSKRVSILGDPWFDSR  259 (292)
Q Consensus       206 -----------------~~~~~-------~~g~~~~l~C~~~~~-~p~-~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                                       +.+.+       ..|+.++|.|.+ .| +|+ +.|.|+++|+++............++.+.. 
T Consensus       320 ~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~-~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~-  397 (434)
T 1igy_B          320 PAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMI-TDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFV-  397 (434)
T ss_dssp             SSCCCCCCCCCCSCCBCCCCEEECCCSSSSSSSEEEEEEEE-EEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEE-
T ss_pred             CCceeEEEeccCCCCcCCEEEEECCCHHHhcCCcEEEEEEE-EeeECCCeEEEEEECCEecCCceeccceeCCCCcEEE-
Confidence                             11111       246779999998 66 454 499999999988421111111233333321 


Q ss_pred             cccccccccccccccceeEEEEeeccccc
Q psy15128        260 RSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       260 ~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                       ...|.+.....+|.|.|+|.|.|.....
T Consensus       398 -~s~l~i~~~~~~~~g~YtC~a~n~~l~~  425 (434)
T 1igy_B          398 -YSKLNVQKSNWEAGNTFTCSVLHEGLHN  425 (434)
T ss_dssp             -EEEEEEEHHHHHTTCCEEEEEEETTSGG
T ss_pred             -EEEEEECchhccCCCEEEEEEEcCCCCC
Confidence             2245566667778999999999987653

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.97  E-value=2.2e-30  Score=197.58  Aligned_cols=212  Identities=14%  Similarity=0.123  Sum_probs=160.5

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCC-eeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      .|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+..            ....|.|.+++.+|+|.|+|.+.
T Consensus         1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~------------~~~~l~i~~~~~~d~G~Y~C~~~   68 (262)
T 3rjd_A            1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQT------------STPSYRITSASVNDSGEYRCQRG   68 (262)
T ss_dssp             CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSC------------CSSEEEESSCCGGGCEEEEEEES
T ss_pred             CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeec------------cCCeEEEecCCcccCeEEEEEEe
Confidence            3667778888889999999999999888877 9999999887521            14679999999999999999998


Q ss_pred             eCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEe-ccCCCCceEEEeCCeeCCCCCccEEEcCCCcEE
Q psy15128        115 SVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA-VGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQ  193 (292)
Q Consensus       115 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~  193 (292)
                      +..+..  ...+.+..     ++ +...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...      ...+.|.
T Consensus        69 ~~~~s~--~~~l~v~~-----~~-~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~------~~~~~l~  134 (262)
T 3rjd_A           69 LSGRSD--PIQLEIHR-----GW-LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF------HWNSNLT  134 (262)
T ss_dssp             SSCCCC--CEEEEEEC-----SS-EEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE------EECCCEE
T ss_pred             cCCccc--cEEEEEec-----cc-eEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc------CCCCeEE
Confidence            765443  34444442     22 3334455668899999999999 67788899999998876431      1245677


Q ss_pred             EEeeecCCCCCC-------------------------------cceEEeCCCceEEEeeCCCCCCC-C----eEEEeEcC
Q psy15128        194 IDVLRDDFRAEP-------------------------------KDTRVASGETALLECGPPKGQPE-P----TLHWKKNG  237 (292)
Q Consensus       194 i~~~~~~d~g~~-------------------------------~~~~~~~g~~~~l~C~~~~~~p~-~----~~~W~~~g  237 (292)
                      |.++..+|+|.|                               ....+.+|+.+.|.|.+ .+.|. +    .+.|+++|
T Consensus       135 i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~-~~~p~~p~~~~~~~w~~~~  213 (262)
T 3rjd_A          135 ILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCET-KLLLQRPGLQLYFSFYMGS  213 (262)
T ss_dssp             ESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEEC-CCCCC-----EEEEEEETT
T ss_pred             EEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeecCceeecCCCeEEEEeEc-ccCCCCCCccEEEEEEeCC
Confidence            777777777711                               22346789999999998 77765 4    47899999


Q ss_pred             eEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccc
Q psy15128        238 QFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  289 (292)
                      ..+...               .....|.|..+..+|+|.|+|.|.|..|+..
T Consensus       214 ~~~~~~---------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~  250 (262)
T 3rjd_A          214 KTLRGR---------------NTSSEYQILTARREDSGLYWCEAATEDGNVL  250 (262)
T ss_dssp             EEEEEE---------------ESCCEEEESSCCGGGCEEEEEEEEETTSSCE
T ss_pred             cEeccc---------------CCCceEEEEEechhhCeEEEEEEEcccCceE
Confidence            877411               1122588899999999999999999999753

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.97  E-value=9.3e-31  Score=204.73  Aligned_cols=230  Identities=13%  Similarity=0.210  Sum_probs=164.5

Q ss_pred             ccEEecCCcEEEEEEEe-eeCCCeeEEEECCeEEeeccCCCcceeEEe---eecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         45 DQKVGLNGIASFQCVAE-GSPLPSVFWTQEGSQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      ...+.+|+.+.|.|... +.|.+.+.|+|++..+.  ..   .+....   ....|.|.+++.+|+|.|+|.+.|..+..
T Consensus        10 ~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~--~~---~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~   84 (312)
T 2y23_A           10 VVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTE--DS---PRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIA   84 (312)
T ss_dssp             EEEECTTCCEEEEEECSSCCTTCCEEEEETTEECT--TC---TTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCC
T ss_pred             eEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECC--CC---CCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcE
Confidence            45677899999988775 46888999999998763  11   122222   22489999999999999999999877744


Q ss_pred             eEEEEEEEEeecC--------CCCCeEEeCCCCceecCCCeEEEEeEec-cCCCCceEEEeCCeeCCCCCccEEEcC---
Q psy15128        121 TVRAFLQVTSVED--------TPPPIVQVGPSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPPEDTRINVSS---  188 (292)
Q Consensus       121 ~~~~~l~v~~~~~--------~~~~~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~~~W~~~~~~l~~~~~~~~~~~---  188 (292)
                      . ...+.+.....        .++......+....+.+|+.+.|.|.+. +.|.+.+.|++++.++.... ++.+..   
T Consensus        85 ~-s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~-~~~~~~~~~  162 (312)
T 2y23_A           85 S-SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGP-KYKMHIDRN  162 (312)
T ss_dssp             E-EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSS-SCEEEEETT
T ss_pred             E-EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCC-cEEEEEccC
Confidence            3 34443321000        0222222222356788999999999998 78999999999999987653 222222   


Q ss_pred             CC--cEEEEeeecCCCCCCc-----------------------------------------------ceEEeCCCceEEE
Q psy15128        189 SG--SLQIDVLRDDFRAEPK-----------------------------------------------DTRVASGETALLE  219 (292)
Q Consensus       189 ~~--~l~i~~~~~~d~g~~~-----------------------------------------------~~~~~~g~~~~l~  219 (292)
                      .+  .|.|.++..+|+|.|.                                               ...+.+|+.+.|.
T Consensus       163 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~l~  242 (312)
T 2y23_A          163 TGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLK  242 (312)
T ss_dssp             TTEEEEEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEEEE
T ss_pred             CCEEEEEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEEEE
Confidence            22  3889999999998331                                               1367899999999


Q ss_pred             eeCCCCCCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        220 CGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       220 C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      |.+ .+.|++ .+.|+++|..+..  +.++.+..+       ...|.|..+..+|+|.|+|.|+|..|+++.+
T Consensus       243 C~~-~~~p~~~~v~W~~~g~~~~~--~~~~~~~~~-------~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~  305 (312)
T 2y23_A          243 CKV-ANIKKETHIVWYKDEREISV--DEKHDFKDG-------ICTLLITEFSKKDAGIYEVILKDDRGKDKSR  305 (312)
T ss_dssp             EEE-ESCCSSCEEEEEETTEEEEE--ECCC----C-------EEEEEECSCSGGGCEEEEEEEESTTCCEEEE
T ss_pred             EEE-cCCCCCCEEEEeeCCEECCC--CCcEEEECC-------EEEEEECcCCHHHCEEEEEEEEcCCCceeee
Confidence            998 788887 9999999999863  222222211       2368899999999999999999999998653

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.97  E-value=8.8e-32  Score=210.86  Aligned_cols=239  Identities=18%  Similarity=0.231  Sum_probs=169.2

Q ss_pred             CccEEecCCcEEEEEEEeeeC-CCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeE
Q psy15128         44 QDQKVGLNGIASFQCVAEGSP-LPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV  122 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~  122 (292)
                      ....+.+|+.+.|.|.+.+.+ .+.+.|++++..+.... ....+... .++.|.|.+++.+|+|.|+|.+.|..+....
T Consensus        13 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~-~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~   90 (315)
T 1itb_B           13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVST-EQASRIHQ-HKEKLWFVPAKVEDSGHYYCVVRNSSYCLRI   90 (315)
T ss_dssp             CCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCC-CTTSSSEE-CSSBEECTTCCGGGCSCCEECCCSSSCCCCE
T ss_pred             eEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCcccc-ccCCcEec-cCCeEEECCCChhhCEEEEEEEeCCceEEEE
Confidence            356788999999999998876 77999999986542211 11222222 2458999999999999999999988776655


Q ss_pred             EEEEEEEeecCCCCCeEEeCC---CCceecCCCeEEEEeEe------ccCCCCceEEEeCCeeCCCCCccEEEcCCCcEE
Q psy15128        123 RAFLQVTSVEDTPPPIVQVGP---SNQTLPLHSVAFLPCQA------VGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQ  193 (292)
Q Consensus       123 ~~~l~v~~~~~~~~~~~~~~~---~~~~~~~g~~v~l~C~~------~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~  193 (292)
                      ...+.+...    +|.+...+   ....+..|+.+.|.|.+      .+.|.+.+.|++++.++.....++ ....+.|.
T Consensus        91 ~~~v~v~~~----~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~-~~~~~~L~  165 (315)
T 1itb_B           91 KISAKFVEN----EPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHF-SGVKDRLI  165 (315)
T ss_dssp             ECCCEEECC----CTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSE-EEETTEEE
T ss_pred             EEEEEEeCC----CCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceE-eecCceEE
Confidence            555444321    22111111   12357789999999998      788999999999999987644443 23455788


Q ss_pred             EEeeecCCCCCC-------------------------------------c--ceEEeCCCceEEEeeCCCCCCCCeEEEe
Q psy15128        194 IDVLRDDFRAEP-------------------------------------K--DTRVASGETALLECGPPKGQPEPTLHWK  234 (292)
Q Consensus       194 i~~~~~~d~g~~-------------------------------------~--~~~~~~g~~~~l~C~~~~~~p~~~~~W~  234 (292)
                      |.++..+|+|.|                                     .  ...+.+|+.+.|.|.+ .+.|.+.+.|+
T Consensus       166 i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~-~g~P~p~i~W~  244 (315)
T 1itb_B          166 VMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNV-TGQLSDIAYWK  244 (315)
T ss_dssp             ESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEE-EECTTSEEEEE
T ss_pred             EEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEE-ecCCCCeeEEE
Confidence            888888887721                                     1  1356789999999998 88999999999


Q ss_pred             EcCeEeccCCC----ceEEecCCCc-cccccccccccccccccc-cceeEEEEeeccccccc
Q psy15128        235 KNGQFIDLESS----KRVSILGDPW-FDSRRSRSIFGSVLGALS-DDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       235 ~~g~~~~~~~~----~~~~~~~~~~-~~~~~~~~l~i~~~~~~~-~g~y~C~a~n~~g~~~~  290 (292)
                      ++|..+.....    .......... ........|.|..+..+| +|.|+|.|+|..|.++.
T Consensus       245 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~  306 (315)
T 1itb_B          245 WNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAA  306 (315)
T ss_dssp             ETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEE
T ss_pred             ECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeE
Confidence            99999864332    1111111100 001122368899999999 99999999999999865

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.97  E-value=7.5e-33  Score=241.63  Aligned_cols=273  Identities=16%  Similarity=0.249  Sum_probs=30.8

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCC---CccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEe
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRP---QDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVL   78 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~---~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~   78 (292)
                      |.+++.+|+|.|+|.+.+..+..... +.|.|..+|.+...+   ....+.+|+.++|.|.+.+.|.+.+.|++++..+.
T Consensus       294 i~~v~~~d~G~Y~C~~~~~~~~~~~~-~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~  372 (772)
T 3v2a_R          294 IDGVTRSDQGLYTCAASSGLMTKKNS-TFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLE  372 (772)
T ss_dssp             ESSCCSTTCSEEEEEEECSSCEEEEE-EEEEEECCCC-------------------------------------------
T ss_pred             ECcCCcCCCeEEEEEEEcCCcceeEE-EEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCC
Confidence            67899999999999999887765555 889998888665433   35668889999999999999999999999987663


Q ss_pred             eccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEe---CCCCceecCCCeEE
Q psy15128         79 MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQV---GPSNQTLPLHSVAF  155 (292)
Q Consensus        79 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~---~~~~~~~~~g~~v~  155 (292)
                      .       .........|.|.++..+|+|.|+|.+.|..+.......+.+.+.   .+|.+..   ......+.+|+.++
T Consensus       373 ~-------~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~---~~P~~~~~~~~~~~~~~~~g~~~~  442 (772)
T 3v2a_R          373 S-------NHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVY---VPPQIGEKSLISPVDSYQYGTTQT  442 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             C-------CceEccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEe---cCCcccccccCCCccccCCCCcEE
Confidence            2       111224578999999999999999999998776544433333322   1222211   11212377899999


Q ss_pred             EEeEeccCCCCc-eEEEeCCee--------------------------------CCCCCccEEEcC-----CCcEEEEee
Q psy15128        156 LPCQAVGSPPPH-IRWYKNGNS--------------------------------LPPEDTRINVSS-----SGSLQIDVL  197 (292)
Q Consensus       156 l~C~~~~~p~~~-~~W~~~~~~--------------------------------l~~~~~~~~~~~-----~~~l~i~~~  197 (292)
                      |.|.+.+.|.|. +.|++++..                                +.....+.....     ...|.|.++
T Consensus       443 l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~  522 (772)
T 3v2a_R          443 LTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA  522 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec
Confidence            999999998886 999996322                                111001111101     134566555


Q ss_pred             ecCCCCCC----------------------------cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEE
Q psy15128        198 RDDFRAEP----------------------------KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVS  249 (292)
Q Consensus       198 ~~~d~g~~----------------------------~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~  249 (292)
                        +|+|.|                            +...+.+|+.+.|.|.+ .+.|.+.+.|+++|..+.........
T Consensus       523 --~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i~~~p~~~~~~G~~v~l~C~~-~~~p~~~v~W~k~~~~~~~~~~~~~~  599 (772)
T 3v2a_R          523 --NVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTA-DRSTFENLTWYKLGPQPLPIHVGELP  599 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --ccCeEEEEEEEccccccceeEEEEEECCceeeccCCcccccCCceEEEEec-cCCCCCCcEEEEcCCcccccccCccc
Confidence              566622                            22446789999999998 88999999999998766422211111


Q ss_pred             ec-----------CCCcccc--ccccccccccccccccceeEEEEeeccccc
Q psy15128        250 IL-----------GDPWFDS--RRSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       250 ~~-----------~~~~~~~--~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      ..           ....+..  .....|.|..+..+|+|.|+|.|.|..|..
T Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  651 (772)
T 3v2a_R          600 TPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKK  651 (772)
T ss_dssp             ----------------------------------------------------
T ss_pred             ccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCe
Confidence            00           0000000  112348899999999999999999976654

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.97  E-value=2.8e-30  Score=208.06  Aligned_cols=236  Identities=19%  Similarity=0.293  Sum_probs=170.2

Q ss_pred             CCcEEeCCCc-cEEecCCcEEEEEEEeeeCCCeeEEEE-CCeEEeeccCCCcceeEEeeecEEEEccCCCCC------Ce
Q psy15128         36 PPSFVVRPQD-QKVGLNGIASFQCVAEGSPLPSVFWTQ-EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKED------AG  107 (292)
Q Consensus        36 ~p~~~~~~~~-~~~~~g~~~~l~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d------~g  107 (292)
                      +|.+...|.. ..+.+|+.++|.|.+.|.|.+.+.|++ ++..+....    .......++.|.|.+++.+|      +|
T Consensus         3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~----~~~~~~~~~~L~i~~~~~~d~~~~~d~G   78 (388)
T 2v5m_A            3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP----GLRQISSDGKLVFPPFRAEDYRQEVHAQ   78 (388)
T ss_dssp             EEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBT----TTBEECSTTEEEECCCCGGGCCHHHHEE
T ss_pred             CCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCC----CceEEcCCceEEecccChhhccccccCc
Confidence            4667776655 457789999999999999999999999 666543111    11223456789999999987      99


Q ss_pred             EEEEEEEeCCcCe-eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCC---CceEEEeCCeeCCCC---
Q psy15128        108 FFVCSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPP---PHIRWYKNGNSLPPE---  180 (292)
Q Consensus       108 ~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~---~~~~W~~~~~~l~~~---  180 (292)
                      .|+|.+.|..+.. ...+.+.+..     ++.+...+....+.+|+.+.|.|.+.+.+.   +.+.|++++..+...   
T Consensus        79 ~Y~C~a~n~~g~~~s~~~~v~v~~-----~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~  153 (388)
T 2v5m_A           79 VYACLARNQFGSIISRDVHVRAVV-----AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAE  153 (388)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEEC-----CCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSC
T ss_pred             eEEEEEEccCCeEEecceEEEEcc-----ccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccC
Confidence            9999999987753 2334444432     233333455667889999999999987643   679999998765321   


Q ss_pred             -CccEEEcCCCcEEEEeeecCCC-CCC---------------------------------------cceEEeCCCceEEE
Q psy15128        181 -DTRINVSSSGSLQIDVLRDDFR-AEP---------------------------------------KDTRVASGETALLE  219 (292)
Q Consensus       181 -~~~~~~~~~~~l~i~~~~~~d~-g~~---------------------------------------~~~~~~~g~~~~l~  219 (292)
                       ..+.....++.|.|.++..+|+ |.|                                       ....+.+|+.+.|.
T Consensus       154 ~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~  233 (388)
T 2v5m_A          154 YDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLL  233 (388)
T ss_dssp             BTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEEC
T ss_pred             CCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEE
Confidence             2455566778899999999998 722                                       12356789999999


Q ss_pred             eeCCCCCCCCeEEEeEcCeEecc----CCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        220 CGPPKGQPEPTLHWKKNGQFIDL----ESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       220 C~~~~~~p~~~~~W~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      |.+ .+.|.+.+.|++++..+..    ....++..         ....|.|..+..+|+|.|+|.|.|..|..+.
T Consensus       234 C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  298 (388)
T 2v5m_A          234 CPA-QGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQ---------VSGTLIIKDAVVEDSGKYLCVVNNSVGGESV  298 (388)
T ss_dssp             CCC-EEESCCEEEEEEECTTSSCEEECCCSSSEEE---------ETTEEEESSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             EEC-CCCCCCEEEEEecCCCCcccccccccCceec---------ccCEEEECcCCHHHCeEEEEEEecCCCceeE
Confidence            998 7899999999998543310    11112211         1236889999999999999999999998653

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.97  E-value=2.2e-30  Score=204.08  Aligned_cols=231  Identities=15%  Similarity=0.163  Sum_probs=164.0

Q ss_pred             CccEEecCCcEEEEEEEeee---------CCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCe-EEEEEE
Q psy15128         44 QDQKVGLNGIASFQCVAEGS---------PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAG-FFVCSA  113 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~---------~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~C~~  113 (292)
                      ....+.+|+.+.|.|.+.+.         |.+.+.|+|++..+....     +.  ...+.|.|.+++.+|+| .|+|.+
T Consensus        37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~-----~~--~~~~~L~i~~v~~~D~Gs~Y~C~a  109 (329)
T 3oq3_B           37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLN-----RR--VKNGDLWIANYTSNDSHRRYLCTV  109 (329)
T ss_dssp             EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECS-----TT--EETTEEEESSCCGGGGGCCEEEEE
T ss_pred             ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccC-----ce--eecceEEEcCCChHhCCCcEEEEE
Confidence            45568899999999998774         557899999987654311     11  33679999999999999 999999


Q ss_pred             EeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCC-CCceEEEeCCeeCCCCCccEEEcCCCcE
Q psy15128        114 LSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSP-PPHIRWYKNGNSLPPEDTRINVSSSGSL  192 (292)
Q Consensus       114 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p-~~~~~W~~~~~~l~~~~~~~~~~~~~~l  192 (292)
                      .|..|.........+.  . .++..+. .+....+.+|+.+.|.|.+.+.| .+.+.|+|++..+.....++... ++.|
T Consensus       110 ~n~~g~~~~~~~~~v~--~-~~p~~~~-~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~-~~~L  184 (329)
T 3oq3_B          110 TTKNGDCVQGIVRSHI--R-KPPSCIP-ETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS-GQNL  184 (329)
T ss_dssp             ECTTSCEEEEEEEEEE--C-CCCSCEE-EEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE-TTEE
T ss_pred             EeCCCceeeEEEEEEE--c-CCCcEec-cccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC-CCEE
Confidence            9987764433322222  1 2222222 22223356799999999999998 89999999999986544444443 5678


Q ss_pred             EEEeeecCCCCCC--------------------------------------cceEEeCCCceEEEeeCCCCCC---CC-e
Q psy15128        193 QIDVLRDDFRAEP--------------------------------------KDTRVASGETALLECGPPKGQP---EP-T  230 (292)
Q Consensus       193 ~i~~~~~~d~g~~--------------------------------------~~~~~~~g~~~~l~C~~~~~~p---~~-~  230 (292)
                      .|.++..+|+|.|                                      ....+.+|+.+.|.|.+ .+.|   ++ .
T Consensus       185 ~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~-~g~p~~~~~i~  263 (329)
T 3oq3_B          185 IIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTA-VSTSLLVDDVL  263 (329)
T ss_dssp             EECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEE-EETTCCTTCCE
T ss_pred             EEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEE-EECCCCCCCcE
Confidence            8887777777611                                      22456689999999998 7776   67 8


Q ss_pred             EEEeEcCeEeccCCCceEEec--CCCccccccccccccccccccccc-eeEEEEeecccccccC
Q psy15128        231 LHWKKNGQFIDLESSKRVSIL--GDPWFDSRRSRSIFGSVLGALSDD-QWKLIAKNIRNQQQHG  291 (292)
Q Consensus       231 ~~W~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~a~n~~g~~~~~  291 (292)
                      +.|+++|..+.... .+....  ..+.   .....|.|..+..+|+| .|+|.|.|..|.++.+
T Consensus       264 v~W~~~g~~i~~~~-~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~  323 (329)
T 3oq3_B          264 IDWENPSGWIIGLD-FGVYSILTSSGG---ITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLT  323 (329)
T ss_dssp             EEEECTTSCBCCBC-SSEEEEEEEETT---EEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEE
T ss_pred             EEEEECCeeeeccC-CceeeeecccCc---eeEeEEEEEeccHHHCCCcEEEEEEecCCceEEE
Confidence            99999998853222 221111  1111   13346999999999999 9999999999998653

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.97  E-value=7.1e-31  Score=229.21  Aligned_cols=227  Identities=22%  Similarity=0.290  Sum_probs=86.0

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCC--cEEeCCC-ccEEecCCcEEEEEEEeee--CCCeeEEEECCeE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP--SFVVRPQ-DQKVGLNGIASFQCVAEGS--PLPSVFWTQEGSQ   76 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p--~~~~~~~-~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~~~   76 (292)
                      |.+++.+|+|.|+|.+.+.........+.+.+..++  .+.+.+. ...+.+|+.++|.|.+.+.  +.+.+.|++++..
T Consensus       187 i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~  266 (772)
T 3v2a_R          187 IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSK  266 (772)
T ss_dssp             EEGGGTTTCSEEEEEEEETTEEEECCEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC---
T ss_pred             ecCCChhhCeEEEEEEEECCceEEEEEEEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCcc
Confidence            678899999999999997654444432445554332  3334443 3688999999999999874  4568999998876


Q ss_pred             EeeccCCC------cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEe---CCCCce
Q psy15128         77 VLMFPGNA------YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQV---GPSNQT  147 (292)
Q Consensus        77 ~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~---~~~~~~  147 (292)
                      +.......      ...........|.|.+++.+|+|.|+|.+.+..+.......|.|..     +|.+..   .+....
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~-----~p~~~~~~~~~~~~~  341 (772)
T 3v2a_R          267 HQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE-----KPFVAFGSGMESLVE  341 (772)
T ss_dssp             -----CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEEC-----CCC------------
T ss_pred             CCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeC-----CCeeEeccCCCCcEE
Confidence            43211000      0001123455899999999999999999998877666666666653     222222   223456


Q ss_pred             ecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCCCC----------------------
Q psy15128        148 LPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEP----------------------  205 (292)
Q Consensus       148 ~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g~~----------------------  205 (292)
                      +.+|+.+.|.|.+.++|.+.+.|+++|..+...   ........|.|.++..+|+|.|                      
T Consensus       342 v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~  418 (772)
T 3v2a_R          342 ATVGERVRIPAKYLGYPPPEIKWYKNGIPLESN---HTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVY  418 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCC---ceEccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEe
Confidence            789999999999999999999999999888652   1222446889999999998822                      


Q ss_pred             ------------cceEEeCCCceEEEeeCCCCCCCCe-EEEeEcC
Q psy15128        206 ------------KDTRVASGETALLECGPPKGQPEPT-LHWKKNG  237 (292)
Q Consensus       206 ------------~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~g  237 (292)
                                  +...+.+|+.+.|.|.+ .+.|.+. +.|++++
T Consensus       419 ~~P~~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~v~W~~~~  462 (772)
T 3v2a_R          419 VPPQIGEKSLISPVDSYQYGTTQTLTCTV-YAIPPPHHIHWYWQL  462 (772)
T ss_dssp             ---------------------------------------------
T ss_pred             cCCcccccccCCCccccCCCCcEEEEeEe-ccCCCCcEEEEEEcC
Confidence                        11136789999999998 8888886 9999974

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.97  E-value=4e-29  Score=206.38  Aligned_cols=279  Identities=17%  Similarity=0.173  Sum_probs=171.0

Q ss_pred             cccCCcCCCeeEEEEEEecccc-----cccccEEEEEeC----CCcEEeCCCccEEecCCcEEEEEEEeee-CC-C-eeE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGE-----RETKPALLTVHA----PPSFVVRPQDQKVGLNGIASFQCVAEGS-PL-P-SVF   69 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~-----~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~-~v~   69 (292)
                      |.+++.+|+|.|+|.+.+..+.     .....+.|.|..    +|.+...+ ...+.+|+.++|.|.+.+. |. + .|.
T Consensus        84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~-~~~~~~g~~v~L~C~~~g~~P~~p~~v~  162 (475)
T 1iga_A           84 LSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLS-LCSTQPDGNVVIACLVQGFFPQEPLSVT  162 (475)
T ss_pred             ECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecC-ccccCCCCeEEEEEEEeeecCCCceEEE
Confidence            7899999999999999987642     122336788763    34444332 2223689999999999986 55 4 999


Q ss_pred             EEECCeEEeeccCCC---cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeec--------------
Q psy15128         70 WTQEGSQVLMFPGNA---YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVE--------------  132 (292)
Q Consensus        70 W~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~--------------  132 (292)
                      |++++..........   .........+.|.|..+..+|.|.|+|.+.|..+. .....+.+.+..              
T Consensus       163 W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~-~~~~~v~l~V~~~~~~~~~~~~~~~~  241 (475)
T 1iga_A          163 WSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP-SQDVTVPCPVPSTPPTPSPSTPPTPS  241 (475)
T ss_pred             EcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCC-ceeeeEecccccCcccccccccccCC
Confidence            999874321110000   00111222346889999999999999999998753 223333321100              


Q ss_pred             -CCCCCeE-EeCCCCceecCCCeEEEEeEeccCCC---CceEEEeCCeeCCCCC-ccEEE------cCCCcEEEEeeecC
Q psy15128        133 -DTPPPIV-QVGPSNQTLPLHSVAFLPCQAVGSPP---PHIRWYKNGNSLPPED-TRINV------SSSGSLQIDVLRDD  200 (292)
Q Consensus       133 -~~~~~~~-~~~~~~~~~~~g~~v~l~C~~~~~p~---~~~~W~~~~~~l~~~~-~~~~~------~~~~~l~i~~~~~~  200 (292)
                       ...+|.+ ...+....+.+|+.+.|.|.+.+.++   +.+.|  ++..+.... .....      ...+.|.|.++..+
T Consensus       242 ~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~  319 (475)
T 1iga_A          242 PSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWN  319 (475)
T ss_pred             CCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhc
Confidence             0013333 33333334689999999999988744   58999  444332211 11111      12235888888888


Q ss_pred             CCCCC-------------------------cce--------EEeCCCceEEEeeCCCC-CCC-CeEEEeEcCeEeccCC-
Q psy15128        201 FRAEP-------------------------KDT--------RVASGETALLECGPPKG-QPE-PTLHWKKNGQFIDLES-  244 (292)
Q Consensus       201 d~g~~-------------------------~~~--------~~~~g~~~~l~C~~~~~-~p~-~~~~W~~~g~~~~~~~-  244 (292)
                      |+|.|                         +.+        .+..|+.+.|.|.+ .+ +|+ +.|.|+++|+.+.... 
T Consensus       320 d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~-~g~~P~~~~v~W~k~g~~l~~~~~  398 (475)
T 1iga_A          320 HGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLA-RGFSPKDVLVRWLQGSQELPREKY  398 (475)
T ss_pred             cCCcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEE-eeeECCCCEEEEEECCEECCCCce
Confidence            88832                         111        13468889999998 55 443 5999999999985332 


Q ss_pred             -CceEEec---CCCccccccccccccccccccccceeEEEEeecccc
Q psy15128        245 -SKRVSIL---GDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQ  287 (292)
Q Consensus       245 -~~~~~~~---~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~  287 (292)
                       .......   .++.+.  ....|.+......|.|.|+|.|.|....
T Consensus       399 ~~~~~~~~~~~~~gt~~--~~s~L~i~~~~~~~~g~YtC~a~n~~l~  443 (475)
T 1iga_A          399 LTWASRQEPSQGTTTFA--VTSILRVAAEDWKKGDTFSCMVGHEALP  443 (475)
T ss_pred             eecccccccCCCCCcEE--EEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence             0111122   233322  2234666667777899999999998754

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.97  E-value=2.5e-30  Score=205.44  Aligned_cols=243  Identities=13%  Similarity=0.092  Sum_probs=145.0

Q ss_pred             CCccEEecCCcEEEEEEEeeeC-----------CCeeEEEECCeEEe---eccCCCcceeEEeeecEEEEccCCCCCCeE
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSP-----------LPSVFWTQEGSQVL---MFPGNAYGHLHVTQEGTLRIQGVQKEDAGF  108 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~-----------~~~v~W~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  108 (292)
                      ...+.+.+|+.+.|.|.+.+.|           .+.+.|++++....   ...............+.|.|.+++.+|+|.
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   93 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGN   93 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEE
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEE
Confidence            3467789999999999998755           38999999874211   000001111222345689999999999999


Q ss_pred             EEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEe-----ccCCCCceEEEeCCeeCCCCCcc
Q psy15128        109 FVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA-----VGSPPPHIRWYKNGNSLPPEDTR  183 (292)
Q Consensus       109 Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~-----~~~p~~~~~W~~~~~~l~~~~~~  183 (292)
                      |+|.+.|..+.......|.|........+. ...+....+.+|+.+.|.|.+     .+.|.+.+.|++++.++... ..
T Consensus        94 Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~-~~  171 (349)
T 4dep_C           94 YTCMLRNTTYCSKVAFPLEVVQKDSCFNSP-MKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNF-NN  171 (349)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTSCCS-CCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSC-SS
T ss_pred             EEEEEecCCceEEEEEEEEEecCCcccCcc-cccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCc-cc
Confidence            999999987777766777776422111111 112234457899999999985     66788999999999988653 22


Q ss_pred             EEEcCCCcEEEEeeecCCCCCC--------------------------------cc-------e--EEeCCCceEEEeeC
Q psy15128        184 INVSSSGSLQIDVLRDDFRAEP--------------------------------KD-------T--RVASGETALLECGP  222 (292)
Q Consensus       184 ~~~~~~~~l~i~~~~~~d~g~~--------------------------------~~-------~--~~~~g~~~~l~C~~  222 (292)
                      +. .....|.|.++..+|+|.|                                +.       .  .+.+|+.+.|.|.+
T Consensus       172 ~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~  250 (349)
T 4dep_C          172 VI-PEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTV  250 (349)
T ss_dssp             EE-EETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEE
T ss_pred             ee-ecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEE
Confidence            22 2235688888888888811                                11       1  56679999999998


Q ss_pred             CC----CCCCCeEEEeEcCeEeccCCCceEEecC----CCcccccccccccccccccccc-ceeEEEEeeccccccc
Q psy15128        223 PK----GQPEPTLHWKKNGQFIDLESSKRVSILG----DPWFDSRRSRSIFGSVLGALSD-DQWKLIAKNIRNQQQH  290 (292)
Q Consensus       223 ~~----~~p~~~~~W~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~~~-g~y~C~a~n~~g~~~~  290 (292)
                       .    +.|.+.+.|+++|..+... ..++....    ...........|.|..+..+|+ |.|+|.|.|..|.++.
T Consensus       251 -~~~~~g~p~p~v~W~~~g~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~  325 (349)
T 4dep_C          251 -YFSFLMDSRNEVWWTIDGKKPDDI-TIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAK  325 (349)
T ss_dssp             -EECCCTTCCCEEEEESSCC---------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEEEE
T ss_pred             -EEccCCCCCCEEEEEECCEEcccc-CCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEE
Confidence             5    5788999999999888531 11111110    0000011223588999999999 9999999999998765

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.97  E-value=2.3e-29  Score=202.30  Aligned_cols=233  Identities=19%  Similarity=0.293  Sum_probs=168.3

Q ss_pred             CCcEEeCCCccEE---ecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCC-CCCeEEEE
Q psy15128         36 PPSFVVRPQDQKV---GLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQK-EDAGFFVC  111 (292)
Q Consensus        36 ~p~~~~~~~~~~~---~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~Y~C  111 (292)
                      +|.+...|....+   .+|+.++|.|.+.+.|.+.+.|++++..+....   ..+... .++.|.|.++.. +|+|.|+|
T Consensus         4 ~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~---~~~~~~-~~~~L~i~~~~~~~D~G~Y~C   79 (382)
T 1cs6_A            4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGP---DSRYRL-VAGDLVISNPVKAKDAGSYQC   79 (382)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCST---TSSEEE-ETTEEEEESCCHHHHCEEEEE
T ss_pred             CCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCC---CccEEe-eCCeEEEecccccccCEEEEE
Confidence            5667777776665   689999999999999999999999998764222   122222 356899999997 99999999


Q ss_pred             EEEeCCcCee-EEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEe-ccCCCCceEEEeCCeeCC--CCCccEEEc
Q psy15128        112 SALSVAGSTT-VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA-VGSPPPHIRWYKNGNSLP--PEDTRINVS  187 (292)
Q Consensus       112 ~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~~~W~~~~~~l~--~~~~~~~~~  187 (292)
                      .+.|..|... ....+.+.....    .....+....+.+|+.+.|.|.+ .+.|.+.+.|++++.++.  .........
T Consensus        80 ~a~n~~g~~~s~~~~l~v~~~~~----~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~  155 (382)
T 1cs6_A           80 VATNARGTVVSREASLRFGFLQE----FSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQ  155 (382)
T ss_dssp             EEEETTEEEECCCEEEEEEEECC----CCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECT
T ss_pred             EEEcCCcEEEecceEEEeecccc----ccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEec
Confidence            9999876542 234555543211    11123455678899999999996 456888999999987653  222222233


Q ss_pred             CCCcEEEEeeecCCCCCC-----------------------------------------cceEEeCCCceEEEeeCCCCC
Q psy15128        188 SSGSLQIDVLRDDFRAEP-----------------------------------------KDTRVASGETALLECGPPKGQ  226 (292)
Q Consensus       188 ~~~~l~i~~~~~~d~g~~-----------------------------------------~~~~~~~g~~~~l~C~~~~~~  226 (292)
                      ..+.|.|.++..+|+|.|                                         ....+.+|+.+.|.|.+ .+.
T Consensus       156 ~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~-~g~  234 (382)
T 1cs6_A          156 TTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFA-FGN  234 (382)
T ss_dssp             TTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEE-EEE
T ss_pred             CceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEE-ccC
Confidence            346788888888877721                                         23456789999999998 889


Q ss_pred             CCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        227 PEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       227 p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      |.+.+.|++++..+..    ..         ......|.|..+..+|+|.|+|.|.|..|..+.
T Consensus       235 p~~~i~W~~~~~~~~~----~~---------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  285 (382)
T 1cs6_A          235 PVPQIKWRKLDGSQTS----KW---------LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTY  285 (382)
T ss_dssp             SCCEEEEEECCSCCSC----CC---------SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCCEEEEEECCccccc----EE---------ecCCcEEEEccCChhhCEEEEEEEEcCCCeEEE
Confidence            9999999998876531    00         012236888999999999999999999998653

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.96  E-value=1.7e-29  Score=197.65  Aligned_cols=231  Identities=18%  Similarity=0.287  Sum_probs=154.2

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCCC-----eeEEEECCeEEee--c-cC-----CCcceeEE--------eeecEEEE
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPLP-----SVFWTQEGSQVLM--F-PG-----NAYGHLHV--------TQEGTLRI   98 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~-----~v~W~~~~~~~~~--~-~~-----~~~~~~~~--------~~~~~l~i   98 (292)
                      +..|..+.+..|++++|.|.+.+.+.+     .+.|+|++.....  . ..     ....+...        ..+..|.|
T Consensus         4 v~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I   83 (313)
T 4fqp_A            4 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRM   83 (313)
T ss_dssp             EECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEE
T ss_pred             EcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEE
Confidence            345556678889999999999876554     4899998753210  0 00     00011111        12357999


Q ss_pred             ccCCCCCCeEEEEEEEeC-CcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEe-ccCCCCceEEEeCCee
Q psy15128         99 QGVQKEDAGFFVCSALSV-AGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA-VGSPPPHIRWYKNGNS  176 (292)
Q Consensus        99 ~~~~~~d~g~Y~C~~~~~-~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~~~W~~~~~~  176 (292)
                      .+++.+|+|.|+|.+.+. .+.....+.|.+.     ..|.....+....+..++.+.+.|.+ .+.|.+.+.|++++..
T Consensus        84 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~-----~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~  158 (313)
T 4fqp_A           84 FGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL-----AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGG  158 (313)
T ss_dssp             CSCCGGGCEEEEEEEECSSSCEEEEEEEECCB-----BCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCC
T ss_pred             CcCChhhCEEEEEEEeeccCcceeeeeeeeec-----cCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCcc
Confidence            999999999999998643 3333444444333     24444444555567788899999987 4678999999999877


Q ss_pred             CCCCCccEEEcCCC------cEEEEeeecCCCCCC--------------------------------cceEEeCCCceEE
Q psy15128        177 LPPEDTRINVSSSG------SLQIDVLRDDFRAEP--------------------------------KDTRVASGETALL  218 (292)
Q Consensus       177 l~~~~~~~~~~~~~------~l~i~~~~~~d~g~~--------------------------------~~~~~~~g~~~~l  218 (292)
                      +... .......++      .|.|.....+|.|.|                                ....+..|+.++|
T Consensus       159 ~~~~-~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l  237 (313)
T 4fqp_A          159 MPNT-SQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATL  237 (313)
T ss_dssp             EEEE-EEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEE
T ss_pred             cccc-ceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEE
Confidence            6432 122222222      255555556666611                                2233456889999


Q ss_pred             EeeCCCCCCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        219 ECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       219 ~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      .|.+ .|+|.| .|.|+++|.++..  ..  ...         ...|.|..+...|+|.|+|.|+|..|+++.
T Consensus       238 ~C~~-~g~P~p~~v~W~~~~~~l~~--~~--~~~---------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  296 (313)
T 4fqp_A          238 TCDA-RSNPEPTGYNWSTTMGPLPP--FA--VAQ---------GAQLLIRPVDKPINTTLICNVTNALGARQA  296 (313)
T ss_dssp             EEEE-EEESCCCEEEEEETTBSCCT--TE--EEE---------TTEEEECCCSSCCEEEEEEEEECSSCEEEE
T ss_pred             EEEe-cCCCCCcEEEEEECCEECCC--ce--EEe---------CCEEEECcCChhhCEEEEEEEEeCCCcEEE
Confidence            9998 889988 7999999988742  11  111         126889999999999999999999998764

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.96  E-value=7.2e-30  Score=197.84  Aligned_cols=234  Identities=14%  Similarity=0.187  Sum_probs=163.7

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      .+|.+...+....+.+|+.++|.|.+.+.    +.|++++....       ........+.|.|.+++.+|+|.|+|.+.
T Consensus         3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~-------~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   71 (292)
T 4dkd_C            3 SIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSPHW-------TLYSDGSSSILSTNNATFQNTGTYRCTEP   71 (292)
T ss_dssp             -CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCSSC-------EECCBTTEEEEEESSCCGGGCSCEEECCC
T ss_pred             CCceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCCce-------EEeccCceEEEEEcccccccCEEEEEEEc
Confidence            46777777888899999999999999763    99997543211       00111123589999999999999999999


Q ss_pred             eCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCC--CceEEEeC-CeeCCCCCccEEEcCCCc
Q psy15128        115 SVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPP--PHIRWYKN-GNSLPPEDTRINVSSSGS  191 (292)
Q Consensus       115 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~--~~~~W~~~-~~~l~~~~~~~~~~~~~~  191 (292)
                      +..+.....+.|.|..    ++..+...+....+.+|+.+.|.|.+.+ |.  +.+.|+++ +..+.. ...+.....+.
T Consensus        72 n~~~~~~~~~~l~V~~----~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~  145 (292)
T 4dkd_C           72 GDPLGGSAAIHLYVKD----PARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMR-HTNYSFSPWHG  145 (292)
T ss_dssp             C----CCEEECCEECC----SSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCS-SCCEECCSSSC
T ss_pred             cCCCCcceEEEEEEcC----ccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCcccc-CCcccccCCce
Confidence            8777666666666653    2333455566777889999999999987 44  67999997 444433 34555556667


Q ss_pred             EEEEeeecCCCCCC----------------------------------cceEEeCCCceEEEeeCCCCCC-CCeEEEeEc
Q psy15128        192 LQIDVLRDDFRAEP----------------------------------KDTRVASGETALLECGPPKGQP-EPTLHWKKN  236 (292)
Q Consensus       192 l~i~~~~~~d~g~~----------------------------------~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~  236 (292)
                      |.|.++..+|+|.|                                  ....+.+|+.+.|.|.+ .+.| ++.+.|+++
T Consensus       146 L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~-~~~~~~~~~~w~~~  224 (292)
T 4dkd_C          146 FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSA-SSVDVNFDVFLQHN  224 (292)
T ss_dssp             CEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEE-EESSSCCEEECCBS
T ss_pred             EEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEe-cCCCCceEEEEeCC
Confidence            88888888888821                                  12233589999999998 5644 467999999


Q ss_pred             CeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        237 GQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       237 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      +..+.....  ........   .....|.|..+..+|+|.|+|.|.|..|.++.+
T Consensus       225 ~~~~~~~~~--~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~  274 (292)
T 4dkd_C          225 NTKLAIPQQ--SDFHNNRY---QKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTS  274 (292)
T ss_dssp             SCCCCCCBE--EEEETTEE---EEEEEEEESSCCTTSCEEEEEEEECSSCEEEEE
T ss_pred             CcccccCcc--ceecccee---eeEEEEEECccChhcCeEEEEEEecCCCCceeE
Confidence            887642222  22222211   122368899999999999999999999987643

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.96  E-value=6.1e-30  Score=199.78  Aligned_cols=231  Identities=15%  Similarity=0.218  Sum_probs=153.1

Q ss_pred             CccEEecCCcEEEEEEEeee-CCCeeEEEECCeEEe----ec--------cCCCcceeEEe----eecEEEEccCCCCCC
Q psy15128         44 QDQKVGLNGIASFQCVAEGS-PLPSVFWTQEGSQVL----MF--------PGNAYGHLHVT----QEGTLRIQGVQKEDA  106 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~----~~--------~~~~~~~~~~~----~~~~l~i~~~~~~d~  106 (292)
                      ..+.+.+|++++|.|.+.+. +.+.+.|+|++....    ..        ......+....    .+..|.|.+++.+|+
T Consensus         7 p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~   86 (308)
T 4fom_A            7 PHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDS   86 (308)
T ss_dssp             CSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGC
T ss_pred             CEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHC
Confidence            35678899999999998654 445799998643211    00        01111122211    235799999999999


Q ss_pred             eEEEEEEEeCC-cCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEe-ccCCCCceEEEeCCeeCCCCCccE
Q psy15128        107 GFFVCSALSVA-GSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA-VGSPPPHIRWYKNGNSLPPEDTRI  184 (292)
Q Consensus       107 g~Y~C~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~~~W~~~~~~l~~~~~~~  184 (292)
                      |.|+|.+.+.. +.......+.+..   .+.+.....+.......|+.+.|.|.+ .+.|.+.+.|++++.++.......
T Consensus        87 G~Y~C~a~n~~~~~~~~~~~~~v~~---~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~  163 (308)
T 4fom_A           87 GKYICKAVTFPLGNAQSSTTVTVLV---EPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSF  163 (308)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEEEEB---CCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEEC
T ss_pred             EEEEEEEeeCCCcceeeeeEEEeee---ccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCccccccccee
Confidence            99999998753 3344444454443   222333344555556678999999986 678999999999998875421100


Q ss_pred             ---EEcCCCcEEEEeeecCCCCCC--------------------------------cceEEeCCCceEEEeeCCCCCCCC
Q psy15128        185 ---NVSSSGSLQIDVLRDDFRAEP--------------------------------KDTRVASGETALLECGPPKGQPEP  229 (292)
Q Consensus       185 ---~~~~~~~l~i~~~~~~d~g~~--------------------------------~~~~~~~g~~~~l~C~~~~~~p~~  229 (292)
                         .......|.|..+..+|.|.|                                ....+..|+.++|.|.+ .|.|+|
T Consensus       164 ~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~-~g~P~p  242 (308)
T 4fom_A          164 PNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNA-DANPPP  242 (308)
T ss_dssp             TTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCE-EEESCE
T ss_pred             eeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEE-ecCCCC
Confidence               000012466777777777611                                23345678999999998 888888


Q ss_pred             -eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        230 -TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       230 -~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                       .+.|+|++..+...  .  ...        ....+.|..+..+|+|.|+|.|+|.+|+++.
T Consensus       243 ~~v~W~k~~~~~~~~--~--~~~--------~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~  292 (308)
T 4fom_A          243 FKSVWSRLDGQWPDG--L--LAS--------DNTLHFVHPLTFNYSGVYICKVTNSLGQRSD  292 (308)
T ss_dssp             EEEECCBSSSCCCSS--C--BCS--------TTEEECCSCCCSCCCSEEEEEEEETTEEEEE
T ss_pred             cEEEEEECCeECCCc--E--EEc--------CCeEEEECCCChhhCEEEEEEEEeCCCcEEE
Confidence             79999998877421  1  111        1224667889999999999999999998764

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.96  E-value=8.6e-28  Score=185.44  Aligned_cols=196  Identities=25%  Similarity=0.477  Sum_probs=153.3

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCC-ccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeec
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQ-DQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMF   80 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~   80 (292)
                      |.+++.+|+|.|+|.+.|..+..... +.|.|..+|.+...+. ...+.+|+.+.|.|.+.+.|.+.+.|++++..+...
T Consensus        65 i~~v~~~d~G~Y~C~~~n~~g~~~~~-~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~  143 (284)
T 2rik_A           65 VLKVTKGDAGQYTCYASNVAGKDSCS-AQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQES  143 (284)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEEEE-EEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCS
T ss_pred             EecCCcccCEEEEEEEEECCceEEEE-EEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCC
Confidence            67899999999999999988776555 8999999998776554 446789999999999999999999999999876321


Q ss_pred             cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEe
Q psy15128         81 PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA  160 (292)
Q Consensus        81 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~  160 (292)
                        .............|.|.+++.+|+|.|+|.+.|..+.......|.|..     +|.+...+....+..|+.+.|.|.+
T Consensus       144 --~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-----~p~~~~~~~~~~~~~g~~v~l~C~~  216 (284)
T 2rik_A          144 --SKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE-----PPVFRKKPHPVETLKGADVHLECEL  216 (284)
T ss_dssp             --SSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC-----CCBCCSCCCCEEECTTCCEEEEEEC
T ss_pred             --CcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEec-----CCcceeCCCcceecCCCeEEEEEEE
Confidence              111111122345899999999999999999999888777777777653     4555556666778899999999999


Q ss_pred             ccCCCCceEEEeCCeeCCCCCccEEEcCC---CcEEEEeeecCCCCCCc
Q psy15128        161 VGSPPPHIRWYKNGNSLPPEDTRINVSSS---GSLQIDVLRDDFRAEPK  206 (292)
Q Consensus       161 ~~~p~~~~~W~~~~~~l~~~~~~~~~~~~---~~l~i~~~~~~d~g~~~  206 (292)
                      .+.|.+.+.|++++..+.... ++.....   ..|.|.++..+|+|.|.
T Consensus       217 ~g~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~  264 (284)
T 2rik_A          217 QGTPPFQVSWHKDKRELRSGK-KYKIMSENFLTSIHILNVDSADIGEYQ  264 (284)
T ss_dssp             BSSSCCEEEEEETTEEECBTT-TEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred             EecCCCEEEEEECCEECcCCC-CEEEEEcCCEEEEEEcCCCcccCEEEE
Confidence            999999999999999887653 3322222   36888899888888543

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.96  E-value=7.1e-29  Score=198.11  Aligned_cols=223  Identities=10%  Similarity=0.049  Sum_probs=157.7

Q ss_pred             cEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeecc---------CCCcceeEEe------eecEEEEccCCCCCCeEEE
Q psy15128         46 QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFP---------GNAYGHLHVT------QEGTLRIQGVQKEDAGFFV  110 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~---------~~~~~~~~~~------~~~~l~i~~~~~~d~g~Y~  110 (292)
                      +.+.+|+.++|.|.+.+.|.+.+.|++++..+....         .....+....      ....|.|.+++.+|+|.|+
T Consensus         4 v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   83 (363)
T 1wio_A            4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (363)
T ss_dssp             EEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEEE
T ss_pred             EEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEEE
Confidence            467889999999999888889999999985422110         1112233222      2457999999999999999


Q ss_pred             EEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCCC
Q psy15128        111 CSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG  190 (292)
Q Consensus       111 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~  190 (292)
                      |.+.+..    ....|.|..        +...+. ..+.+|+.++|.|.+.+.|.+.+.|++++..+        .....
T Consensus        84 C~~~n~~----~~~~l~V~~--------~~~~~~-~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~  142 (363)
T 1wio_A           84 CEVEDQK----EEVQLLVFG--------LTANSD-THLLQGQSLTLTLESPPGSSPSVQCRSPRGKN--------IQGGK  142 (363)
T ss_dssp             EEETTEE----EEEEEEEEE--------EEESSC-SSEESBSCEEEEEECCTTCCCCEEEECSSSCE--------EEESS
T ss_pred             EEEEECC----CcEEEEEEe--------CCCCCc-eEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc--------cccce
Confidence            9997753    245555542        122222 35789999999999988999999999987543        22456


Q ss_pred             cEEEEeeecCCCCCC--------------------------cceEEeCCCceEEEeeCCCC-----CCCCeEEEeEcCeE
Q psy15128        191 SLQIDVLRDDFRAEP--------------------------KDTRVASGETALLECGPPKG-----QPEPTLHWKKNGQF  239 (292)
Q Consensus       191 ~l~i~~~~~~d~g~~--------------------------~~~~~~~g~~~~l~C~~~~~-----~p~~~~~W~~~g~~  239 (292)
                      .|.|.++..+|+|.|                          ....+.+|+.+.|.|.+ .+     .|.+.+.|+++|..
T Consensus       143 ~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~~~~~~~~G~~v~l~C~~-~~~~~~~~P~p~i~W~~~g~~  221 (363)
T 1wio_A          143 TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPL-AFTVEKLTGSGELWWQAERAS  221 (363)
T ss_dssp             EEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCSEEEEEEETBCCEEEECCC-CCCCCSSCEEEEEEEEESSCC
T ss_pred             EEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCCCceEEecCCEEEEEEEE-ecccccCCCceeEEEecCCCC
Confidence            888888988888832                          33457789999999987 56     78899999999988


Q ss_pred             eccC------CCceEEecCCC---cc--ccccccccccccccccccceeEEEEeec--cccccc
Q psy15128        240 IDLE------SSKRVSILGDP---WF--DSRRSRSIFGSVLGALSDDQWKLIAKNI--RNQQQH  290 (292)
Q Consensus       240 ~~~~------~~~~~~~~~~~---~~--~~~~~~~l~i~~~~~~~~g~y~C~a~n~--~g~~~~  290 (292)
                      +...      .+.++.+....   ..  .......|.|..+..+|+|.|+|.|.|.  .|..+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~  285 (363)
T 1wio_A          222 SSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQ  285 (363)
T ss_dssp             CCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEE
T ss_pred             ccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEE
Confidence            7531      12222221100   00  0011236889999999999999999999  886543

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.96  E-value=8.9e-28  Score=189.39  Aligned_cols=234  Identities=15%  Similarity=0.227  Sum_probs=155.4

Q ss_pred             cEEeCCCccEEecCCcEEEEEEEeee----CCCeeEEEECC--eEEe--e--------ccCCCcceeEEe----eecEEE
Q psy15128         38 SFVVRPQDQKVGLNGIASFQCVAEGS----PLPSVFWTQEG--SQVL--M--------FPGNAYGHLHVT----QEGTLR   97 (292)
Q Consensus        38 ~~~~~~~~~~~~~g~~~~l~C~~~~~----~~~~v~W~~~~--~~~~--~--------~~~~~~~~~~~~----~~~~l~   97 (292)
                      .+...+....+.+|+.++|.|.+.+.    +.+.+.|++++  ....  .        .......+..+.    .+..|.
T Consensus        16 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~   95 (331)
T 3u83_A           16 QVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIR   95 (331)
T ss_dssp             -----CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEE
T ss_pred             ceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEE
Confidence            34445667789999999999998775    44479999953  2110  0        001111223221    345799


Q ss_pred             EccCCCCCCeEEEEEE-EeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCC---CeEEEEeE-eccCCCCceEEEe
Q psy15128         98 IQGVQKEDAGFFVCSA-LSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLH---SVAFLPCQ-AVGSPPPHIRWYK  172 (292)
Q Consensus        98 i~~~~~~d~g~Y~C~~-~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g---~~v~l~C~-~~~~p~~~~~W~~  172 (292)
                      |.+++.+|+|.|+|.+ .+..+.......|.|..   .+...+...+....+.+|   +.+.|.|. +.+.|.+.+.|++
T Consensus        96 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~---~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~  172 (331)
T 3u83_A           96 LSRLELEDEGVYICEFATFPTGNRESQLNLTVMA---KPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWET  172 (331)
T ss_dssp             ECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEB---CCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEE
T ss_pred             EcccCcccCcEEEEEEEecCCCccEEEEEEEEec---CCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEc
Confidence            9999999999999984 45556555566666653   122222335566667888   88999998 7888999999999


Q ss_pred             CCeeCCCCCccEEEcCCC------cEEEEeeecCCCCCC------------------------------cceEEeCCCce
Q psy15128        173 NGNSLPPEDTRINVSSSG------SLQIDVLRDDFRAEP------------------------------KDTRVASGETA  216 (292)
Q Consensus       173 ~~~~l~~~~~~~~~~~~~------~l~i~~~~~~d~g~~------------------------------~~~~~~~g~~~  216 (292)
                      ++.....  .......++      .|.|..+..+|+|.|                              ....+.+|+.+
T Consensus       173 ~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~  250 (331)
T 3u83_A          173 RLKGEAE--YQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDV  250 (331)
T ss_dssp             SSCCEEE--EEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCE
T ss_pred             CCCCccc--cceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEecCCCceEeCCCeE
Confidence            6322111  111112233      355555678888822                              22336679999


Q ss_pred             EEEeeCCCCCCCCe-EEEeEcCeEeccCCCceEEecCCCccccccccccccc-cccccccceeEEEEeeccccccc
Q psy15128        217 LLECGPPKGQPEPT-LHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGS-VLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       217 ~l~C~~~~~~p~~~-~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      .|.|.+ .+.|.+. +.|++++..+..  .  ....         ...|.|. .+..+|+|.|+|.|+|..|.++.
T Consensus       251 ~l~C~~-~g~p~p~~i~W~~~~~~~~~--~--~~~~---------~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~  312 (331)
T 3u83_A          251 KLTCKA-DANPPATEYHWTTLNGSLPK--G--VEAQ---------NRTLFFKGPINYSLAGTYICEATNPIGTRSG  312 (331)
T ss_dssp             EEEEEE-EEESCCCEEEEEETTBSCCT--T--EEEE---------TTEEEECSCCCGGGCEEEEEEEEETTEEEEE
T ss_pred             EEEEeC-cCCCCCCEEEEEECCCcccc--c--ceec---------CcEEEEeCCCccccCeEEEEEEEeccccceE
Confidence            999998 8899997 999999987742  1  1111         1258888 89999999999999999998754

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.96  E-value=1.6e-28  Score=192.38  Aligned_cols=237  Identities=13%  Similarity=0.142  Sum_probs=151.6

Q ss_pred             EEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeE
Q psy15128         29 ALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGF  108 (292)
Q Consensus        29 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  108 (292)
                      +...+..+|.+...+. ..+.+|+.++|.|.+.+. .+.+.|+|++..+...      .......+.|.|.+++.+|+|.
T Consensus        17 ~~~~~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~------~~~~~~~~~L~I~~v~~~D~G~   88 (316)
T 3vh8_G           17 SHMGGQDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPI------FHGRIFQESFNMSPVTTAHAGN   88 (316)
T ss_dssp             -------CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCH------HHHCCBSSCEEECSCCGGGCEE
T ss_pred             cccCCCCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCcccee------ecCCcceEEEEECCCCcccCeE
Confidence            4455566788887776 578899999999999876 6789999998754210      0111235689999999999999


Q ss_pred             EEEEEEeCCc-----CeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCcc
Q psy15128        109 FVCSALSVAG-----STTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTR  183 (292)
Q Consensus       109 Y~C~~~~~~~-----~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~  183 (292)
                      |+|.+.+..+     .......|.|.  ...++|.+...+... +.+|+.++|.|.+. .+++.+.|++++..+......
T Consensus        89 Y~C~a~~~~~~~~~~~~s~~~~l~V~--~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~  164 (316)
T 3vh8_G           89 YTCRGSHPHSPTGWSAPSNPVVIMVT--GNHRKPSLLAHPGPL-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLV  164 (316)
T ss_dssp             EEEEEBCSSSSSSBCCCCCCEEEEEE--CSSCCCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEE
T ss_pred             EEEEEEcCCCCcceecCCCcEEEEEe--cCCCCCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEEEEEECCCccccceee
Confidence            9999985322     12233444443  333456666555544 88999999999994 456789999999877542111


Q ss_pred             EEE---cCCCcEEEEeeecCCCCCC------------------------------------cceEEeCCCceEEEeeCCC
Q psy15128        184 INV---SSSGSLQIDVLRDDFRAEP------------------------------------KDTRVASGETALLECGPPK  224 (292)
Q Consensus       184 ~~~---~~~~~l~i~~~~~~d~g~~------------------------------------~~~~~~~g~~~~l~C~~~~  224 (292)
                      ...   ...+.|.|.++..+|+|.|                                    +...+.+|+.++|.|.+ .
T Consensus       165 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~-~  243 (316)
T 3vh8_G          165 GQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSS-R  243 (316)
T ss_dssp             CEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCSCCCTTSCCEEEEEE-S
T ss_pred             eeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCCeecCCCcEEEEEEC-C
Confidence            111   1234678888888877721                                    01134579999999998 4


Q ss_pred             CCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccc
Q psy15128        225 GQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQ  287 (292)
Q Consensus       225 ~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~  287 (292)
                       .|.+.|.|+++|..+...  ........+    .....|.|..+.  |+|.|+|.|.|..+.
T Consensus       244 -~~~~~~~W~k~g~~~~~~--~~~~~~~~~----~~~~~L~i~~v~--D~G~Y~C~a~n~~~~  297 (316)
T 3vh8_G          244 -SSYDMYHLSREGGAHERR--LPAVRKVNR----TFQADFPLGPAT--HGGTYRCFGSFRHSP  297 (316)
T ss_dssp             -SCCSEEEEEETTSSCCEE--EECEECTTS----CEEEEEECC-------CEEEEEEEBTTBT
T ss_pred             -CCCcEEEEEECCCcCCCc--eeceeccCC----ceeEEEEcCCcC--CCEEEEEEeecCCCc
Confidence             477899999999876311  111111111    112357888888  999999999998774

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.96  E-value=2e-27  Score=183.97  Aligned_cols=199  Identities=21%  Similarity=0.346  Sum_probs=148.2

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeecc
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFP   81 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~   81 (292)
                      |.+++.+|+|.|+|.+.+..+......+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....
T Consensus        64 i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~  143 (291)
T 2wim_A           64 IYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS  143 (291)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCC
T ss_pred             EccCCcccCEEEEEEEecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccC
Confidence            67899999999999999988776555588899888888777778889999999999999998999999999987664221


Q ss_pred             CCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCC--CceecCCCeEEEEeE
Q psy15128         82 GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPS--NQTLPLHSVAFLPCQ  159 (292)
Q Consensus        82 ~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~--~~~~~~g~~v~l~C~  159 (292)
                         ..+.....++.|.|.+++.+|.|.|+|.+.+..+.......+.+.+..   +|.+...+.  ...+.+|+.+.|.|.
T Consensus       144 ---~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~  217 (291)
T 2wim_A          144 ---DNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV---PPAISMPQKSFNATAERGEEMTFSCR  217 (291)
T ss_dssp             ---CSSEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEB---CCCCBCSCSEEECCSSSCCEEEEECB
T ss_pred             ---CceEEEccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEecc---CCccccCcccccceecCCCeEEEEEE
Confidence               223334446689999999999999999999877554433333333221   233322222  335678999999999


Q ss_pred             eccCCCCceEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCCCCc
Q psy15128        160 AVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEPK  206 (292)
Q Consensus       160 ~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g~~~  206 (292)
                      +.+.|.+.+.|++++..+............+.|.|.++..+|+|.|.
T Consensus       218 ~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  264 (291)
T 2wim_A          218 ASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYV  264 (291)
T ss_dssp             CCCBSCCEEEEEETTEECCCTTTEEECSTTCEEEEESCCSTTCEEEE
T ss_pred             eecCCCCeEEEEECCEECcCCccEEEcCCccEEEEeeCCcccCEEEE
Confidence            99999999999999999877543322334568999999999988553

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.96  E-value=3.4e-27  Score=182.74  Aligned_cols=197  Identities=25%  Similarity=0.393  Sum_probs=151.2

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeecc
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFP   81 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~   81 (292)
                      |.+++.+|+|.|+|.+.+..+......+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... 
T Consensus        66 i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-  144 (291)
T 1qz1_A           66 IYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILK-  144 (291)
T ss_dssp             ECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTT-
T ss_pred             EecCCCCCCEEEEEEEEcCCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccC-
Confidence            6789999999999999998765555558899999998888888888999999999999999999999999998765321 


Q ss_pred             CCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeE--EEEEEEEeecCCCCCeEEeCCC--CceecCCCeEEEE
Q psy15128         82 GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV--RAFLQVTSVEDTPPPIVQVGPS--NQTLPLHSVAFLP  157 (292)
Q Consensus        82 ~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~--~~~l~v~~~~~~~~~~~~~~~~--~~~~~~g~~v~l~  157 (292)
                        ...+.....++.|.|.+++.+|+|.|+|.+.+..+....  ...+.+..     +|.+...+.  ...+..|+.+.|.
T Consensus       145 --~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~-----~p~~~~~~~~~~~~~~~g~~v~l~  217 (291)
T 1qz1_A          145 --KDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNV-----PPTVQARQSIVNATANLGQSVTLV  217 (291)
T ss_dssp             --CCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEE-----EEEEEESCSEEEEETTSCCCEEEE
T ss_pred             --CCceEEEccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEec-----CCcccccccccccccccCceEEEE
Confidence              122233344568999999999999999999987654433  33444432     334443322  3456789999999


Q ss_pred             eEeccCCCCceEEEeCCeeCCCCC---ccEEEcCC-CcEEEEeeecCCCCCCc
Q psy15128        158 CQAVGSPPPHIRWYKNGNSLPPED---TRINVSSS-GSLQIDVLRDDFRAEPK  206 (292)
Q Consensus       158 C~~~~~p~~~~~W~~~~~~l~~~~---~~~~~~~~-~~l~i~~~~~~d~g~~~  206 (292)
                      |.+.+.|.|.+.|++++..+....   .++..... ..|.|.++..+|+|.|.
T Consensus       218 C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  270 (291)
T 1qz1_A          218 CDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYV  270 (291)
T ss_dssp             EEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEE
T ss_pred             EEEEEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEE
Confidence            999999999999999999987653   24444443 46999999999988553

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.96  E-value=9.4e-28  Score=183.32  Aligned_cols=201  Identities=15%  Similarity=0.231  Sum_probs=141.3

Q ss_pred             cEEecCCcEEEEEEEee-eCCC--eeEEEECCeEEeeccCCCcceeEEeeecEEEEccC---CCCCCeE--EEEEEEeCC
Q psy15128         46 QKVGLNGIASFQCVAEG-SPLP--SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGV---QKEDAGF--FVCSALSVA  117 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~d~g~--Y~C~~~~~~  117 (292)
                      ..+.+|+.++|.|.+.+ .|.+  .+.|++++..+..       .. ......+.+..+   +..|.|.  |+|.+.|..
T Consensus        13 ~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~-------~~-~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~   84 (265)
T 2oz4_A           13 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP-------TV-TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGN   84 (265)
T ss_dssp             SEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC-------EE-EECSSEEEEEEEEEECGGGCEEEEEEEEEEETT
T ss_pred             ceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc-------eE-eeCCCeEEEEeecccccccCCcceEEEEEecCC
Confidence            46889999999999998 6766  9999999987631       11 122335555544   7778874  999999988


Q ss_pred             cCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCCCcEEEEee
Q psy15128        118 GSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVL  197 (292)
Q Consensus       118 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~  197 (292)
                      +.......|.|..   .+++.+..  ....+.+|+.+.|.|.+.  |.+.+.|  +|..+.....      .+.|.|..+
T Consensus        85 ~~~~~~~~l~V~~---~p~p~~~~--~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~~------~~~l~i~~~  149 (265)
T 2oz4_A           85 QSQETLQTVTIYS---FPAPNVIL--TKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLGP------RAQLLLKAT  149 (265)
T ss_dssp             EEEEEEEEEEEEC---CCCCEEEE--SCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCSS------EECCEEECC
T ss_pred             CCcEEEEEEEEeC---CCCceeec--CCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCCC------cEEEEEccc
Confidence            8776667777653   23344443  455678899999999987  8899999  7777743211      012222222


Q ss_pred             ecCCCC-----------------------------------CCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEecc
Q psy15128        198 RDDFRA-----------------------------------EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDL  242 (292)
Q Consensus       198 ~~~d~g-----------------------------------~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~  242 (292)
                      ..+|.|                                   .+....+.+|+.+.|.|.+ .|.|.+.+.|+++|..+. 
T Consensus       150 ~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~-~g~P~p~i~W~~~~~~~~-  227 (265)
T 2oz4_A          150 PEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQA-WGNPLPELKCLKDGTFPL-  227 (265)
T ss_dssp             GGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCC-EEESCCEEEEEETTTEEC-
T ss_pred             cccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeEC-ccCCCCeEEEEECCcccC-
Confidence            222222                                   2345678899999999998 899999999999987321 


Q ss_pred             CCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        243 ESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                               ..+          .+..+..+|+|.|+|.|.|..|.++.
T Consensus       228 ---------~~g----------~~~~v~~~d~G~Y~C~a~N~~G~~~~  256 (265)
T 2oz4_A          228 ---------PIG----------ESVTVTRDLEGTYLCRARSTQGEVTR  256 (265)
T ss_dssp             ---------CTT----------SCEECCGGGCEEEEEEEEETTEEEEE
T ss_pred             ---------CCC----------cEEEeehhhCeEEEEEEECCCCcEEE
Confidence                     111          11236778999999999999998764

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.95  E-value=4.6e-26  Score=189.37  Aligned_cols=283  Identities=17%  Similarity=0.155  Sum_probs=167.4

Q ss_pred             cccCCcCCCeeEEEEEEeccc----------c--cccccEEEEEeC----CCcEEe-CCCccEEecCCcEEEEEEEeee-
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVG----------E--RETKPALLTVHA----PPSFVV-RPQDQKVGLNGIASFQCVAEGS-   63 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~----------~--~~~~~~~l~v~~----~p~~~~-~~~~~~~~~g~~~~l~C~~~~~-   63 (292)
                      |.+++.+|+|.|+|.+.+..+          .  .....+.|.|..    +|.+.. .+.......++.++|.|.+.+. 
T Consensus        84 I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~  163 (512)
T 1zvo_C           84 LRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYH  163 (512)
T ss_pred             ECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeee
Confidence            789999999999999987642          1  122336788763    343332 2211102346899999999886 


Q ss_pred             CCC-eeEEEECCeEEeec--cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEE-----------EEEEE
Q psy15128         64 PLP-SVFWTQEGSQVLMF--PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA-----------FLQVT  129 (292)
Q Consensus        64 ~~~-~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~-----------~l~v~  129 (292)
                      |.+ .+.|++++......  .........+...+.|.|.....+ .|.|+|.+.|..+......           .+.+.
T Consensus       164 P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~  242 (512)
T 1zvo_C          164 PTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPT  242 (512)
T ss_pred             cCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEe
Confidence            665 89999965421100  000000111223346889888877 8999999999877655443           22222


Q ss_pred             eec-----------------------------------------------CCCCCeE-EeCCCCceecCCCeEEEEeEec
Q psy15128        130 SVE-----------------------------------------------DTPPPIV-QVGPSNQTLPLHSVAFLPCQAV  161 (292)
Q Consensus       130 ~~~-----------------------------------------------~~~~~~~-~~~~~~~~~~~g~~v~l~C~~~  161 (292)
                      +..                                               ...+|.+ ...+....+..|+.++|.|.+.
T Consensus       243 ~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v~  322 (512)
T 1zvo_C          243 AQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVV  322 (512)
T ss_pred             CCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEEEe
Confidence            100                                               0012233 3344444566899999999998


Q ss_pred             cCCC--CceEEEeCCeeCCCCC--ccEEEcCCC------cEEEEeeecCCCCCC--------------------------
Q psy15128        162 GSPP--PHIRWYKNGNSLPPED--TRINVSSSG------SLQIDVLRDDFRAEP--------------------------  205 (292)
Q Consensus       162 ~~p~--~~~~W~~~~~~l~~~~--~~~~~~~~~------~l~i~~~~~~d~g~~--------------------------  205 (292)
                      ++++  ..+.|+++|..+....  .......++      .|.|..+..+|.|.|                          
T Consensus       323 g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~~~~~~~~~~~~~~~  402 (512)
T 1zvo_C          323 GSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQRLMALREPAAQAPV  402 (512)
T ss_pred             ceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCCceeEEeecCCCCCC
Confidence            8733  3799999998865211  111112233      255555555555511                          


Q ss_pred             -cceEEe----CCCceE-EEeeCCCC-CCCC-eEEEeEcCeEeccCCCc--eEEecCCCc-ccccccccccccccccccc
Q psy15128        206 -KDTRVA----SGETAL-LECGPPKG-QPEP-TLHWKKNGQFIDLESSK--RVSILGDPW-FDSRRSRSIFGSVLGALSD  274 (292)
Q Consensus       206 -~~~~~~----~g~~~~-l~C~~~~~-~p~~-~~~W~~~g~~~~~~~~~--~~~~~~~~~-~~~~~~~~l~i~~~~~~~~  274 (292)
                       +.+.+.    .|+.+. |.|.+ .| +|+. .+.|+++|+++......  ......++. +.  ....|.+......|.
T Consensus       403 ~p~v~~~~~~~~~~~~~~L~C~~-~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~--~~s~L~v~~~~~~~~  479 (512)
T 1zvo_C          403 KLSLNLLASSDPPEAASWLLCEV-SGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFW--AWSVLRVPAPPSPQP  479 (512)
T ss_pred             CCEEEEEccCcCCCCceEEEEEE-eeeCCCCcEEEEEECCeECcCccccccceeECCCCCEEE--EEEEEEECchhcCCC
Confidence             111122    378899 99999 55 5543 78999999998532111  122233332 22  222455666666679


Q ss_pred             ceeEEEEeeccccc
Q psy15128        275 DQWKLIAKNIRNQQ  288 (292)
Q Consensus       275 g~y~C~a~n~~g~~  288 (292)
                      |.|+|+|.|.....
T Consensus       480 g~YtC~v~h~~l~~  493 (512)
T 1zvo_C          480 ATYTCVVSHEDSRT  493 (512)
T ss_pred             CeEEEEEEecCCCC
Confidence            99999999987654

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.95  E-value=1e-27  Score=185.42  Aligned_cols=234  Identities=13%  Similarity=0.134  Sum_probs=143.4

Q ss_pred             CCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEE----eeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV----TQEGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      ......+.+|+.++|.|.+.+.    +.|++++..+..       +...    ...+.|.|.+++.+|+|.|+|.+.|..
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~-------~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~   74 (289)
T 3mjg_X            6 PGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQ-------EMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSR   74 (289)
T ss_dssp             SCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSE-------EEEECTTSCEEEEEEECSCCGGGCEEEEEECCC--
T ss_pred             CCCeEEEeCCCcEEEEEeccce----EEEECCCCCccc-------ceeccCCCceeEEEEEccCChhhCEEEEEEEcccC
Confidence            3445678899999999998763    999999876520       1111    113589999999999999999999877


Q ss_pred             cC-eeEEEEEEEEeecCCCCCeEEeCCCC--ceecCCCeEEEEeEeccCCCCceEEEeCC--eeCCCC---Ccc-EEEcC
Q psy15128        118 GS-TTVRAFLQVTSVEDTPPPIVQVGPSN--QTLPLHSVAFLPCQAVGSPPPHIRWYKNG--NSLPPE---DTR-INVSS  188 (292)
Q Consensus       118 ~~-~~~~~~l~v~~~~~~~~~~~~~~~~~--~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~l~~~---~~~-~~~~~  188 (292)
                      |. ......+.+.+.. ...+.+...+..  ..+.+|+.+.|.|.+. .|.+.+.|++++  .++...   ... .....
T Consensus        75 g~~~~~~~~~~v~v~~-p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~~~~~~~~~~~~d  152 (289)
T 3mjg_X           75 GLETDERKRLYIFVPD-PTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVPYDHQRGFSGIFE  152 (289)
T ss_dssp             ----CCCEEEEEECCC-TTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCCEETTTEEEECCC
T ss_pred             CCCcCcEEeEEEEEEC-CCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccceeecCCcCeeeecc
Confidence            64 2223344444321 111222111111  4578999999999998 677889998864  333211   011 11122


Q ss_pred             CCcEEEEeeec-------------CCCC------CCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEE
Q psy15128        189 SGSLQIDVLRD-------------DFRA------EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVS  249 (292)
Q Consensus       189 ~~~l~i~~~~~-------------~d~g------~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~  249 (292)
                      .|.+.+.....             ....      .+....+.+|+.+.|.|.+ .+.|.+.+.|+++++...........
T Consensus       153 ~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~  231 (289)
T 3mjg_X          153 DRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIV-IGNEVVNFEWTYPRKESGRLVEPVTD  231 (289)
T ss_dssp             SSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEE-ESCSSBEEEEECTTSSSSCCCCCEEE
T ss_pred             CcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEE-CCCCCcceEEEcCCccCCCccccccc
Confidence            23333322100             0000      1133567899999999998 78999999999887654211111111


Q ss_pred             ecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        250 ILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       250 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      .....  .......|.|..+..+|+|.|+|.|.|..|.++.+
T Consensus       232 ~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~  271 (289)
T 3mjg_X          232 FLLDM--PYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDE  271 (289)
T ss_dssp             ESCTT--TTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEE
T ss_pred             ccCCc--ceEEEEEEEEcccChhhCcEEEEEeecCCCCceeE
Confidence            11110  11233479999999999999999999999998754

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.95  E-value=2.4e-27  Score=193.99  Aligned_cols=242  Identities=16%  Similarity=0.213  Sum_probs=157.3

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeeeCC----CeeEEEECC--eEEe--ecc-----CCCcceeEEe---eecEEEEccCC
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGSPL----PSVFWTQEG--SQVL--MFP-----GNAYGHLHVT---QEGTLRIQGVQ  102 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~~~----~~v~W~~~~--~~~~--~~~-----~~~~~~~~~~---~~~~l~i~~~~  102 (292)
                      +...|..+.+.+|+.++|.|.+.+.+.    +.+.|+|++  ..+.  ...     .....+....   ....|.|.+++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   83 (438)
T 1qgc_4            4 LTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVE   83 (438)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCc
Confidence            334466778899999999999987765    489999963  2111  100     0111222222   23479999999


Q ss_pred             CCCCeEEEEEEEeCCcCe-eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEecc-CCCC-ceEEEeCCeeCCC
Q psy15128        103 KEDAGFFVCSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVG-SPPP-HIRWYKNGNSLPP  179 (292)
Q Consensus       103 ~~d~g~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~~~W~~~~~~l~~  179 (292)
                      .+|+|.|+|.+.+..+.. .....+.|..  ...+|.+...+.......|+.+.|.|.+.+ .|.+ .+.|+++|.++..
T Consensus        84 ~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~--~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~  161 (438)
T 1qgc_4           84 ADDVATYYCQQSNEVPLTFGAGTKLDLKR--ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQN  161 (438)
T ss_dssp             GGGCEEEEEEECSSTTCCBCCCEEEEECC--CCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             CcCCeeEEEEEecCCCccccCceeEEecC--CCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCC
Confidence            999999999999876532 2234455532  222455554333334456889999999977 5666 8999999998866


Q ss_pred             CC-ccEEE--cC------CCcEEEEeeecCCCCCC-----------------------------cceEEeCCCceEEEee
Q psy15128        180 ED-TRINV--SS------SGSLQIDVLRDDFRAEP-----------------------------KDTRVASGETALLECG  221 (292)
Q Consensus       180 ~~-~~~~~--~~------~~~l~i~~~~~~d~g~~-----------------------------~~~~~~~g~~~~l~C~  221 (292)
                      .. .....  ..      .+.|.|.++..+|+|.|                             ....+.+|+.++|.|.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~  241 (438)
T 1qgc_4          162 GVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCT  241 (438)
T ss_dssp             TEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETTC-CCEEEEECCEEECTTCCEEEEEE
T ss_pred             CceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceecccccccceeEEecCCceEEecCCcEEEEEE
Confidence            41 11111  11      12578888888888821                             3445779999999999


Q ss_pred             CCCCCC--CCeEEEeEc--CeEecc----C-----------CCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128        222 PPKGQP--EPTLHWKKN--GQFIDL----E-----------SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK  282 (292)
Q Consensus       222 ~~~~~p--~~~~~W~~~--g~~~~~----~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~  282 (292)
                      + .+.|  .+.+.|+++  |+.+..    .           ...++.+..+..   .....|.|..+..+|+|.|+|.|.
T Consensus       242 ~-~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~  317 (438)
T 1qgc_4          242 A-SGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNA---KNTLYLQMSSLRSADTAMYYCVRR  317 (438)
T ss_dssp             E-ESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETT---TTEEEEEECSCCGGGCCEEEEEEC
T ss_pred             E-cccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecC---CCeEEEEECCCChhhCEEEEEEEE
Confidence            8 7777  679999996  544320    0           011222211100   112368999999999999999999


Q ss_pred             eccc
Q psy15128        283 NIRN  286 (292)
Q Consensus       283 n~~g  286 (292)
                      |..|
T Consensus       318 n~~~  321 (438)
T 1qgc_4          318 EDGG  321 (438)
T ss_dssp             CSSS
T ss_pred             ccCC
Confidence            9554

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.95  E-value=4.4e-26  Score=177.59  Aligned_cols=174  Identities=30%  Similarity=0.484  Sum_probs=137.6

Q ss_pred             cccCCc-CCCeeEEEEEEecccccccccEEEEEeCC-------CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEEC
Q psy15128          2 ITEVKK-SDEGKYQCYVQNMVGERETKPALLTVHAP-------PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE   73 (292)
Q Consensus         2 i~~v~~-~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~   73 (292)
                      |.+++. +|+|.|+|.+.|..|..... +.|.|..+       |.+...+....+.+|+.+.|.|.+.+.|.+.+.|+++
T Consensus        67 i~~~~~~~D~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~  145 (304)
T 2yd9_A           67 IQPLRTPRDENVYECVAQNSVGEITVH-AKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD  145 (304)
T ss_dssp             ECSCCTTTTCSEEEEEEECSSCEECCE-EEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEET
T ss_pred             EecccccCCCeEEEEEEECCCCeEEEE-EEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEEC
Confidence            678887 99999999999988875555 88998764       6677777778899999999999999999999999999


Q ss_pred             CeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEE-EEEEEEeecCCCCCeEEeCCCCceecCCC
Q psy15128         74 GSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR-AFLQVTSVEDTPPPIVQVGPSNQTLPLHS  152 (292)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~-~~l~v~~~~~~~~~~~~~~~~~~~~~~g~  152 (292)
                      +..+....  ...+.....++.|.|.+++.+|+|.|+|.+.|..+..... ..+.+.+.  ..+|.+...+....+.+|+
T Consensus       146 ~~~~~~~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~--~~~P~~~~~~~~~~v~~G~  221 (304)
T 2yd9_A          146 FLPVDPSA--SNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQ--NVAPRFSILPMSHEIMPGG  221 (304)
T ss_dssp             TEECCGGG--GTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECC--CEEEEEEECCCCBCCCTTC
T ss_pred             CEECcCCC--CcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEee--ccCCcEEecCCceEEcCCC
Confidence            98764221  1122333445689999999999999999999987754432 44554321  2356666677777789999


Q ss_pred             eEEEEeEeccCCCCceEEEeCCeeCCCC
Q psy15128        153 VAFLPCQAVGSPPPHIRWYKNGNSLPPE  180 (292)
Q Consensus       153 ~v~l~C~~~~~p~~~~~W~~~~~~l~~~  180 (292)
                      .+.|.|.+.+.|.|.+.|++++..+...
T Consensus       222 ~v~l~C~~~g~p~p~v~W~~~~~~l~~~  249 (304)
T 2yd9_A          222 NVNITCVAVGSPMPYVKWMQGAEDLTPE  249 (304)
T ss_dssp             CEEEEEEEEEESCCEEEEEETTEECSCS
T ss_pred             eEEEEEEEeeeCCCEEEEEECCEECCCc
Confidence            9999999999999999999999988764

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.95  E-value=1.4e-26  Score=180.47  Aligned_cols=245  Identities=19%  Similarity=0.194  Sum_probs=156.7

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEE--eeecEEEEccCCCCCCeEEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV--TQEGTLRIQGVQKEDAGFFVCS  112 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~C~  112 (292)
                      .+|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+.... .. .....  .....|.|.+++.+|+|.|+|.
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~-~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~   80 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG-LK-YRIQEFKGGYHQLIIASVTDDDATVYQVR   80 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCS-SS-EEEEEETTTEEEEEESSCCGGGCSEEEEE
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCC-Ce-EEEEECCCCEEEEEEccCChhhCeEEEEE
Confidence            46788888888999999999999999999999999999998764211 11 11111  1123899999999999999999


Q ss_pred             EEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEc---CC
Q psy15128        113 ALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVS---SS  189 (292)
Q Consensus       113 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~---~~  189 (292)
                      +.|..+.......|.|........+.....+....+..|+.+.|.|.+.+.|.+.+.|++++..+.... ++...   ..
T Consensus        81 a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~  159 (305)
T 2nzi_A           81 ATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG-HYQVIVTRSF  159 (305)
T ss_dssp             EEETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSS-SCEEEECSSE
T ss_pred             EEcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCC-cEEEEEcCCc
Confidence            999888776677777654221111111122345567889999999999999999999999998887543 22222   23


Q ss_pred             CcEEEEe-eecCCCCCCcce--------------------------EE--eCCCceEEEeeCCCCC-CCCeEEEeEcCeE
Q psy15128        190 GSLQIDV-LRDDFRAEPKDT--------------------------RV--ASGETALLECGPPKGQ-PEPTLHWKKNGQF  239 (292)
Q Consensus       190 ~~l~i~~-~~~~d~g~~~~~--------------------------~~--~~g~~~~l~C~~~~~~-p~~~~~W~~~g~~  239 (292)
                      ..|.|.+ +..+|.|.|...                          .+  ..+..+.|.|...... ..+.+.+.....+
T Consensus       160 ~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~  239 (305)
T 2nzi_A          160 TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCA  239 (305)
T ss_dssp             EEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEEEEEEEE
T ss_pred             eEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCceeEEEEEEec
Confidence            4688888 899999944111                          11  1233444444420000 0011111111111


Q ss_pred             eccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        240 IDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      .   ..........     .....+.|..+...+.|.|+|.|.|..|....
T Consensus       240 ~---~~~~w~~~~~-----~~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~  282 (305)
T 2nzi_A          240 T---TAERWLRVGQ-----ARETRYTVINLFGKTSYQFRVIAENKFGLSKP  282 (305)
T ss_dssp             T---TSCCEEEEEE-----ESSSEEEECSCCSSCEEEEEEEEEETTEECCC
T ss_pred             C---CCCccEECcc-----ccCceEEecCCCCCCeEEEEEEEEeCCcccCC
Confidence            1   0011100000     11235778899999999999999999998754

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.94  E-value=1.7e-24  Score=174.45  Aligned_cols=236  Identities=20%  Similarity=0.285  Sum_probs=163.2

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEEC--CeEEeeccCCCcceeEEe---eecEEEEccCCCCCCeEEEE
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE--GSQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVC  111 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C  111 (292)
                      |.+.. +....+.+|+.+.|.|.+.|.|.+.+.|+++  +..+.........+....   ..+.|.|.+++.+|+|.|+|
T Consensus         2 P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C   80 (389)
T 2jll_A            2 PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDC   80 (389)
T ss_dssp             CEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEE
T ss_pred             CeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEE
Confidence            45554 5567788899999999999999999999999  766532111112233332   34689999999999999999


Q ss_pred             EEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCC-ccEEEcC--
Q psy15128        112 SALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED-TRINVSS--  188 (292)
Q Consensus       112 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~-~~~~~~~--  188 (292)
                      .+.|..|.....+.|.|..     +|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.... .++....  
T Consensus        81 ~a~n~~g~~~~~~~l~V~~-----~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~  155 (389)
T 2jll_A           81 EAASRIGGHQKSMYLDIEY-----APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTG  155 (389)
T ss_dssp             EEECSSCEEEEEEEEEEEE-----EEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECS
T ss_pred             EEEeCCCCcceEEEEEEEe-----CCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccC
Confidence            9999988877777777764     4444444444467899999999999999999999999999987643 2333332  


Q ss_pred             -CCcEEEEeeecCCCCCC-------------------------c-ceE--EeCCCceEEEeeCC---CCCCCC--eEEEe
Q psy15128        189 -SGSLQIDVLRDDFRAEP-------------------------K-DTR--VASGETALLECGPP---KGQPEP--TLHWK  234 (292)
Q Consensus       189 -~~~l~i~~~~~~d~g~~-------------------------~-~~~--~~~g~~~~l~C~~~---~~~p~~--~~~W~  234 (292)
                       ...|.|.++..+|+|.|                         + ...  ...+..+.|.|...   .+.|..  .+.|.
T Consensus       156 ~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~  235 (389)
T 2jll_A          156 RKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVK  235 (389)
T ss_dssp             SCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEEEEEECSSCEEEEEECCSCCTTSCEEEEEEEEE
T ss_pred             CEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceEEeeccCCEEEEEEeCCCCCCCcceEEEEEEEE
Confidence             23699999999999932                         1 111  12356778888631   122322  46677


Q ss_pred             EcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccc
Q psy15128        235 KNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       235 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  289 (292)
                      +++...      .......     .....+.|..+...+.+.|+|.|.|..|...
T Consensus       236 ~~~~~~------~~~~~~~-----~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~  279 (389)
T 2jll_A          236 EVASEI------WKIVRSH-----GVQTMVVLNNLEPNTTYEIRVAAVNGKGQGD  279 (389)
T ss_dssp             ETTCSC------CEEEECS-----TTCSEEEECSCCTTCEEEEEEEEEESSCBCC
T ss_pred             ECCCcc------cEEeecc-----CCcceEEECCccCCCEEEEEEEEEcCCccCC
Confidence            665321      0111111     1123577888999999999999999999754

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.94  E-value=1.1e-25  Score=177.20  Aligned_cols=200  Identities=14%  Similarity=0.182  Sum_probs=140.0

Q ss_pred             cccCCcCCCe-eEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeC-CCeeEEEECCeEEee
Q psy15128          2 ITEVKKSDEG-KYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSP-LPSVFWTQEGSQVLM   79 (292)
Q Consensus         2 i~~v~~~D~G-~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~v~W~~~~~~~~~   79 (292)
                      |.+++.+|+| .|+|.+.+..|......+.+.+..+|.+........+.+|+.+.|.|.+.+.| .+.+.|++++..+..
T Consensus        93 i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~  172 (329)
T 3oq3_B           93 IANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELII  172 (329)
T ss_dssp             ESSCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCC
T ss_pred             EcCCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCC
Confidence            6789999999 99999999887644442334455555544333334466799999999999988 899999999987631


Q ss_pred             ccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeC--CcCeeEE----EEEEEEeecCCCCCeEEeCCCCceecCCCe
Q psy15128         80 FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV--AGSTTVR----AFLQVTSVEDTPPPIVQVGPSNQTLPLHSV  153 (292)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~--~~~~~~~----~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~  153 (292)
                      .    ..+.... ++.|.|.+++.+|+|.|+|.+.|.  .+.....    ..|.|..  ........+.+....+.+|+.
T Consensus       173 ~----~~~~~~~-~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~--~~~~~~~~~~~~~~~v~~G~~  245 (329)
T 3oq3_B          173 D----GTKYSQS-GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIP--SQDHRFKLILDPKINVTIGEP  245 (329)
T ss_dssp             S----SSSEEEE-TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEEC--CCCCCEEEECCSEEEECTTSC
T ss_pred             C----CceEecC-CCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEEC--CCCCCCceecCCeeEEecCCC
Confidence            1    1122222 679999999999999999999986  5444333    4444432  111111222566677899999


Q ss_pred             EEEEeEeccCC---CC-ceEEEeCCeeCCCCCccEEEc-------CCCcEEEEeeecCCCC-CCcce
Q psy15128        154 AFLPCQAVGSP---PP-HIRWYKNGNSLPPEDTRINVS-------SSGSLQIDVLRDDFRA-EPKDT  208 (292)
Q Consensus       154 v~l~C~~~~~p---~~-~~~W~~~~~~l~~~~~~~~~~-------~~~~l~i~~~~~~d~g-~~~~~  208 (292)
                      +.|.|.+.+.|   .+ .+.|++++..+..........       ..+.|.|.++..+|+| .|...
T Consensus       246 ~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~  312 (329)
T 3oq3_B          246 ANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCR  312 (329)
T ss_dssp             EEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEE
T ss_pred             EEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEE
Confidence            99999999987   66 789999998854333322221       2357899999999988 66433

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.94  E-value=9.9e-25  Score=160.96  Aligned_cols=179  Identities=28%  Similarity=0.521  Sum_probs=122.4

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEe----eecEEEEccCCC-CCCeEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT----QEGTLRIQGVQK-EDAGFF  109 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~-~d~g~Y  109 (292)
                      .+|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+..    ...+....    ....|.|.+++. +|+|.|
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~----~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y   80 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSG----TQSRYTVLEQPGGISILRIEPVRAGRDDAPY   80 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCT----TSTTEEEEEETTTEEEEEESSCCTTTTCSEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCC----CcceeEEEEcCCCeEEEEEEecCCCCcCceE
Confidence            478888888889999999999999999999999999999987631    11122221    125899999999 999999


Q ss_pred             EEEEEeCCcC-eeEEEEEEEEeecCCC--CCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEE
Q psy15128        110 VCSALSVAGS-TTVRAFLQVTSVEDTP--PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINV  186 (292)
Q Consensus       110 ~C~~~~~~~~-~~~~~~l~v~~~~~~~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~  186 (292)
                      +|.+.|..+. ......|.|......+  .|.+...+...                                        
T Consensus        81 ~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~----------------------------------------  120 (212)
T 2yd1_A           81 ECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTR----------------------------------------  120 (212)
T ss_dssp             EEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCE----------------------------------------
T ss_pred             EEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCce----------------------------------------
Confidence            9999998877 5566666665321111  02222222222                                        


Q ss_pred             cCCCcEEEEeeecCCCCCCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCcccccccccccc
Q psy15128        187 SSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFG  266 (292)
Q Consensus       187 ~~~~~l~i~~~~~~d~g~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i  266 (292)
                                            .+..|+.+.|.|.+ .+.|.+.+.|++++..+... ..++.....         .|.|
T Consensus       121 ----------------------~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~---------~L~i  167 (212)
T 2yd1_A          121 ----------------------VIEVGHTVLMTCKA-IGNPTPNIYWIKNQTKVDMS-NPRYSLKDG---------FLQI  167 (212)
T ss_dssp             ----------------------EEETTCCEEECCEE-ECSSCCEEEEEETTEECCTT-STTEEEETT---------EEEE
T ss_pred             ----------------------EeecCCeEEEEEEe-ccCCCCeEEEEECCeEcccC-CCeEEccCC---------eEEE
Confidence                                  34456666666666 56666666666666665421 122222111         5778


Q ss_pred             ccccccccceeEEEEeeccccccc
Q psy15128        267 SVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       267 ~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      ..+...|+|.|+|.|.|..|....
T Consensus       168 ~~v~~~d~G~Y~C~a~N~~G~~~s  191 (212)
T 2yd1_A          168 ENSREEDQGKYECVAENSMGTEHS  191 (212)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             ccCChhhCEEEEEEeecCCCceeE
Confidence            889999999999999999998854

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.94  E-value=3.2e-24  Score=158.18  Aligned_cols=186  Identities=25%  Similarity=0.467  Sum_probs=118.8

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEE--eeecEEEEccC-CCCCCeEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV--TQEGTLRIQGV-QKEDAGFFVC  111 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~-~~~d~g~Y~C  111 (292)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..   ........  .....|.|.++ +.+|+|.|+|
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~---~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C   81 (212)
T 2yd6_A            5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN---QRFEVIEFDDGSGSVLRIQPLRTPRDEAIYEC   81 (212)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCC---TTEEEEEEGGGTEEEEEECSCCTTTTCEEEEE
T ss_pred             CCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCC---CceeEEEEcCCCceEEEEeccCCCCCCeEEEE
Confidence            467788888888999999999999999999999999999987631   11111111  12347999999 5999999999


Q ss_pred             EEEeCCcCeeEEEEEEEEeecCCC--CCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCC
Q psy15128        112 SALSVAGSTTVRAFLQVTSVEDTP--PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS  189 (292)
Q Consensus       112 ~~~~~~~~~~~~~~l~v~~~~~~~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~  189 (292)
                      .+.|..+.......|.|......+  .|.+...+....+..|+.+.|.|.+.+.|.+.+.|+++                
T Consensus        82 ~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~----------------  145 (212)
T 2yd6_A           82 VASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD----------------  145 (212)
T ss_dssp             EEEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEET----------------
T ss_pred             EEEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEEC----------------
Confidence            999988776666666665321111  13333333334444455555555554444444555554                


Q ss_pred             CcEEEEeeecCCCCCCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCC-CceEEecCCCcccccccccccccc
Q psy15128        190 GSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES-SKRVSILGDPWFDSRRSRSIFGSV  268 (292)
Q Consensus       190 ~~l~i~~~~~~d~g~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~  268 (292)
                                                                     |..+.... ..++.....     .....|.|..
T Consensus       146 -----------------------------------------------g~~l~~~~~~~~~~~~~~-----~~~~~L~i~~  173 (212)
T 2yd6_A          146 -----------------------------------------------FLPVDTSNNNGRIKQLRS-----ESIGALQIEQ  173 (212)
T ss_dssp             -----------------------------------------------TEEC------CCEEEEEE-----TTEEEEEECS
T ss_pred             -----------------------------------------------CccccCcCCCceEEEEec-----CCeEEEEEcC
Confidence                                                           44442111 111111110     0112577888


Q ss_pred             ccccccceeEEEEeecccccccC
Q psy15128        269 LGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       269 ~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      +..+|+|.|+|.|+|..|.+..+
T Consensus       174 ~~~~d~G~Y~C~a~N~~G~~~s~  196 (212)
T 2yd6_A          174 SEESDQGKYECVATNSAGTRYSA  196 (212)
T ss_dssp             CCGGGCEEEEEEEEETTEEEECC
T ss_pred             CCcccCEEEEEEEECCCCccccc
Confidence            99999999999999999998654

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.94  E-value=7.8e-26  Score=179.10  Aligned_cols=241  Identities=15%  Similarity=0.172  Sum_probs=145.2

Q ss_pred             CCccEEecCCcEEEEEEEeee--CCCeeEEEEC--CeEEee---c---------cCCCcceeEEee-----ecEEEEccC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGS--PLPSVFWTQE--GSQVLM---F---------PGNAYGHLHVTQ-----EGTLRIQGV  101 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~--~~~~~~---~---------~~~~~~~~~~~~-----~~~l~i~~~  101 (292)
                      +....+.+|+.++|.|.+.+.  +.+.+.|+|+  +..+..   .         ......+.....     ...|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (344)
T 1za6_B            7 SGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSL   86 (344)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCC
Confidence            445678899999999999876  3578999986  332210   0         011123444332     248999999


Q ss_pred             CCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CC-CceEEEeCCeeCCC
Q psy15128        102 QKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PP-PHIRWYKNGNSLPP  179 (292)
Q Consensus       102 ~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~~~W~~~~~~l~~  179 (292)
                      +.+|+|.|+|.+.+..+.......|.|.... ..+|.+...+....+.+|+.++|.|.+.+. |. +.+.|++++..+..
T Consensus        87 ~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~-~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~  165 (344)
T 1za6_B           87 RSEDTAVYFCTRSLNMAYWGQGTLVTVSSAS-TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGV  165 (344)
T ss_dssp             CGGGCEEEEEEETTTTCEECCCEEEEECSSC-CBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTE
T ss_pred             CcccCEEEEEEEecCcceecCcEEEEEecCC-CCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCce
Confidence            9999999999998854333334455554221 123444433333446799999999999886 54 68999999876421


Q ss_pred             CCccEEEcCCC------cEEEEeeecCCCCCC----------------------------------------------cc
Q psy15128        180 EDTRINVSSSG------SLQIDVLRDDFRAEP----------------------------------------------KD  207 (292)
Q Consensus       180 ~~~~~~~~~~~------~l~i~~~~~~d~g~~----------------------------------------------~~  207 (292)
                      .........++      .|.|..+..+| |.|                                              +.
T Consensus       166 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~  244 (344)
T 1za6_B          166 HTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQ  244 (344)
T ss_dssp             EECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CCBCCE
T ss_pred             eECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcCCE
Confidence            00000001111      34444443333 311                                              11


Q ss_pred             eEEe-------CCCceEEEeeCCCC-CC-CCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeE
Q psy15128        208 TRVA-------SGETALLECGPPKG-QP-EPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWK  278 (292)
Q Consensus       208 ~~~~-------~g~~~~l~C~~~~~-~p-~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~  278 (292)
                      +.+.       .|..++|.|.+ .| +| .+.+.|+++|+.+............++.+..  ...|.+.....+|.|.|+
T Consensus       245 v~~~~~~~~~~~~~~~~L~C~~-~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~--~s~l~i~~~~~~~~g~Yt  321 (344)
T 1za6_B          245 VYTLPPSRDELTKNQVSLTCLV-KGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFL--YSKLTVDKSRWQQGNVFS  321 (344)
T ss_dssp             EEEECCCGGGGGSSSEEEEEEE-EEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEE--EEEEEECHHHHHTTCEEE
T ss_pred             EEEeCCChHhccCCcEEEEEEE-eeEECCCeEEEEEECCeECCCcEecceEECCCCcEEE--EEEEEEChHHccCCCeEE
Confidence            1221       36679999998 66 44 3689999999887532222233344443322  123555556667799999


Q ss_pred             EEEeeccccc
Q psy15128        279 LIAKNIRNQQ  288 (292)
Q Consensus       279 C~a~n~~g~~  288 (292)
                      |.|.|.....
T Consensus       322 C~a~~~~l~~  331 (344)
T 1za6_B          322 CSVMHEALHN  331 (344)
T ss_dssp             EEEECTTSTT
T ss_pred             EEEEcCCCCC
Confidence            9999987543

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.94  E-value=8.1e-25  Score=159.16  Aligned_cols=140  Identities=24%  Similarity=0.358  Sum_probs=97.0

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      +|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+..................|.|.+++.+|+|.|+|.+.+
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   84 (194)
T 2a38_A            5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATN   84 (194)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEc
Confidence            56677777888999999999999999999999999999876532211111111122245899999999999999999999


Q ss_pred             CCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeC
Q psy15128        116 VAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL  177 (292)
Q Consensus       116 ~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l  177 (292)
                      ..+.......+.+..  ...+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+
T Consensus        85 ~~~~~~~~~~l~v~~--~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~  144 (194)
T 2a38_A           85 GSGQATSTAELLVKA--ETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEI  144 (194)
T ss_dssp             TTEEEEEEEEEEEEC--CCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEEC
T ss_pred             CCceEeEEEEEEEcc--CCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEEC
Confidence            877666665565542  122444444455555666666666666666666666666666544

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.94  E-value=1e-24  Score=159.04  Aligned_cols=184  Identities=21%  Similarity=0.319  Sum_probs=131.2

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeee--cEEEEccCCCCCCeEEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE--GTLRIQGVQKEDAGFFVCS  112 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~  112 (292)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....  ..........  ..|.|.+++.+|+|.|+|.
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG--LKYRIQEFKGGYHQLIIASVTDDDATVYQVR   80 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCS--SSEEEEEETTTEEEEEECSCCGGGCSEEEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCC--CcEEEEEcCCCEEEEEECcCCHHhCEEEEEE
Confidence            46788888888999999999999999998999999999998764211  1111111112  2899999999999999999


Q ss_pred             EEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCCCcE
Q psy15128        113 ALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSL  192 (292)
Q Consensus       113 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l  192 (292)
                      +.+..+.......|.|..     ++.+.                      .|.          .+               
T Consensus        81 ~~n~~g~~~~~~~l~V~~-----~p~~~----------------------~~~----------~~---------------  108 (197)
T 2j8h_A           81 ATNQGGSVSGTASLEVEV-----PAKIH----------------------LPK----------TL---------------  108 (197)
T ss_dssp             EEETTEEEEEEEEEEEEE-----EEEEC----------------------CSS----------CB---------------
T ss_pred             EEECCCceeEEEEEEEcC-----CCcCC----------------------CCc----------cc---------------
Confidence            999877665555555542     10000                      000          00               


Q ss_pred             EEEeeecCCCCCCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCcccccccccccccc-ccc
Q psy15128        193 QIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSV-LGA  271 (292)
Q Consensus       193 ~i~~~~~~d~g~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~  271 (292)
                                ..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...  .++.+....     ....|.|.. +..
T Consensus       109 ----------~~~~~~~~~~g~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~--~~~~~~~~~-----~~~~L~i~~~~~~  170 (197)
T 2j8h_A          109 ----------EGMGAVHALRGEVVSIKIPF-SGKPDPVITWQKGQDLIDNN--GHYQVIVTR-----SFTSLVFPNGVER  170 (197)
T ss_dssp             ----------TTBEEEEEETTCCCEEEEEE-EEESCCEEEEEESSCEECSS--SSCEEEECS-----SEEEEECTTCCCG
T ss_pred             ----------cccCeEEEeCCCEEEEEEEE-EecCCCcEEEEECCEEeecC--CCEEEEEcC-----CceEEEEeCCCCc
Confidence                      01124467789999999998 79999999999999988632  333322111     123688888 999


Q ss_pred             cccceeEEEEeeccccccc
Q psy15128        272 LSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       272 ~~~g~y~C~a~n~~g~~~~  290 (292)
                      .|+|.|+|.|.|..|.++.
T Consensus       171 ~d~G~Y~C~a~N~~g~~~~  189 (197)
T 2j8h_A          171 KDAGFYVVCAKNRFGIDQK  189 (197)
T ss_dssp             GGCEEEEEEEEETTEEEEE
T ss_pred             ccCEeEEEEEEeCCCcEeE
Confidence            9999999999999998764

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.93  E-value=9.3e-27  Score=182.86  Aligned_cols=232  Identities=11%  Similarity=0.109  Sum_probs=142.3

Q ss_pred             CcEEEEEEEeee-C-CCeeEEEECCeEEeeccCCCcc---eeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEE
Q psy15128         52 GIASFQCVAEGS-P-LPSVFWTQEGSQVLMFPGNAYG---HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL  126 (292)
Q Consensus        52 ~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l  126 (292)
                      +.++|.|.+.+. | .+.|.|++++..+.........   ...+...+.|.|.++..+|.|.|+|.+.|..+.....+.+
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~  104 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKK  104 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEECC
T ss_pred             CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeeec
Confidence            699999999886 4 4689999999876311100000   0011223467888888889999999999876543322211


Q ss_pred             EEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC---ceEEEeCC-eeCCCCCccEEEcC------CCcEEEE
Q psy15128        127 QVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP---HIRWYKNG-NSLPPEDTRINVSS------SGSLQID  195 (292)
Q Consensus       127 ~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~---~~~W~~~~-~~l~~~~~~~~~~~------~~~l~i~  195 (292)
                      .+. .....+..+...+....+.+|+.++|.|.+.+. |.+   .+.|++++ ..+...........      .+.|.|.
T Consensus       105 ~~~-~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~  183 (323)
T 2wqr_A          105 CAD-SNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVG  183 (323)
T ss_dssp             CCC-SSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECC
T ss_pred             CCC-CCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEEC
Confidence            000 011122333444555567899999999999876 455   89999975 44432211111111      2257777


Q ss_pred             eeecCCCCCC--------------------------cceEE-------eCCCceEEEeeCCCC-CCCC-eEEEeEcCeEe
Q psy15128        196 VLRDDFRAEP--------------------------KDTRV-------ASGETALLECGPPKG-QPEP-TLHWKKNGQFI  240 (292)
Q Consensus       196 ~~~~~d~g~~--------------------------~~~~~-------~~g~~~~l~C~~~~~-~p~~-~~~W~~~g~~~  240 (292)
                      ++..+|+|.|                          +.+.+       ..|+.++|.|.+ .+ .|++ .|.|+++|++|
T Consensus       184 ~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~-~g~~p~~~~v~W~k~g~~l  262 (323)
T 2wqr_A          184 TRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLI-QNFMPEDISVQWLHNEVQL  262 (323)
T ss_dssp             HHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEE-EEEBSSCCEEEEEETTEEC
T ss_pred             HHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEe-eeeeCCCcEEEEEECCEEC
Confidence            7777777722                          11111       128899999998 55 5544 89999999988


Q ss_pred             ccCCCc--eEEecCCCccccccccccccccccccccceeEEEEeecccc
Q psy15128        241 DLESSK--RVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQ  287 (292)
Q Consensus       241 ~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~  287 (292)
                      ......  ......++.+.  ....|.|..+..+|.|.|+|.|.|..+.
T Consensus       263 ~~~~~~~~~~~~~~~g~~~--~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          263 PDARHSTTQPRKTKGSGFF--VFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             CGGGEEECCCEECSSSSEE--EEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             CCCceeecCcccCCCCcEE--EEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            532100  01112232222  2336888888999999999999999886

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.93  E-value=7.9e-25  Score=172.51  Aligned_cols=195  Identities=19%  Similarity=0.242  Sum_probs=141.7

Q ss_pred             cccCCcCCCeeEEEEEEec-ccccccccEEEEEeCCCcEEe--CCCccEEecC---CcEEEEEE-EeeeCCCeeEEEECC
Q psy15128          2 ITEVKKSDEGKYQCYVQNM-VGERETKPALLTVHAPPSFVV--RPQDQKVGLN---GIASFQCV-AEGSPLPSVFWTQEG   74 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~-~~~~~~~~~~l~v~~~p~~~~--~~~~~~~~~g---~~~~l~C~-~~~~~~~~v~W~~~~   74 (292)
                      |.+++.+|+|.|+|.+.+. .+..... +.|.|..+|.+..  .+....+.+|   +.+.|.|. ..+.|.+.+.|++++
T Consensus        96 I~~v~~~D~G~Y~C~~~~~~~~~~~~~-~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~  174 (331)
T 3u83_A           96 LSRLELEDEGVYICEFATFPTGNRESQ-LNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRL  174 (331)
T ss_dssp             ECSCCGGGCEEEEEEEEEETTEEEEEE-EEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESS
T ss_pred             EcccCcccCcEEEEEEEecCCCccEEE-EEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCC
Confidence            7789999999999996544 4544444 8999998887643  4556677888   77999997 778899999999953


Q ss_pred             eEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEE-eCCCCceecCCCe
Q psy15128         75 SQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQ-VGPSNQTLPLHSV  153 (292)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~~~~~~~~~g~~  153 (292)
                      .....................|.|.++..+|.|.|+|.+.|..+.......|.|..     +|.+. ..+....+.+|+.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~-----~P~~~~~~~~~~~~~~g~~  249 (331)
T 3u83_A          175 KGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY-----EPEVTIEGFDGNWYLQRMD  249 (331)
T ss_dssp             CCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEE-----EEEEEEECCCSCCBTTCCC
T ss_pred             CCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEec-----CCeEEEecCCCceEeCCCe
Confidence            32211110011111223345799999999999999999999887766666666653     23333 3445556889999


Q ss_pred             EEEEeEeccCCCCc-eEEEeCCeeCCCCCccEEEcCCCcEEEE-eeecCCCCCCc
Q psy15128        154 AFLPCQAVGSPPPH-IRWYKNGNSLPPEDTRINVSSSGSLQID-VLRDDFRAEPK  206 (292)
Q Consensus       154 v~l~C~~~~~p~~~-~~W~~~~~~l~~~~~~~~~~~~~~l~i~-~~~~~d~g~~~  206 (292)
                      +.|.|.+.+.|.+. +.|++++..+...    ....+++|.|. ++..+|+|.|.
T Consensus       250 ~~l~C~~~g~p~p~~i~W~~~~~~~~~~----~~~~~~~L~i~~~v~~~d~G~Y~  300 (331)
T 3u83_A          250 VKLTCKADANPPATEYHWTTLNGSLPKG----VEAQNRTLFFKGPINYSLAGTYI  300 (331)
T ss_dssp             EEEEEEEEEESCCCEEEEEETTBSCCTT----EEEETTEEEECSCCCGGGCEEEE
T ss_pred             EEEEEeCcCCCCCCEEEEEECCCccccc----ceecCcEEEEeCCCccccCeEEE
Confidence            99999999999998 9999999887653    12245689999 89998888543

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.93  E-value=5.4e-25  Score=172.27  Aligned_cols=201  Identities=19%  Similarity=0.300  Sum_probs=141.1

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEe-CCCcEEeCC---CccEEecCCcEEEEEEE------eeeCCCeeEEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH-APPSFVVRP---QDQKVGLNGIASFQCVA------EGSPLPSVFWT   71 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~-~~p~~~~~~---~~~~~~~g~~~~l~C~~------~~~~~~~v~W~   71 (292)
                      |.+++.+|+|.|+|.+.|..+..... +.+.+. .+|.+...+   ....+..|+.+.|.|.+      .+.|.+.+.|+
T Consensus        66 i~~v~~~D~G~Y~C~a~n~~g~~~~~-~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~  144 (315)
T 1itb_B           66 FVPAKVEDSGHYYCVVRNSSYCLRIK-ISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWY  144 (315)
T ss_dssp             CTTCCGGGCSCCEECCCSSSCCCCEE-CCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEE
T ss_pred             ECCCChhhCEEEEEEEeCCceEEEEE-EEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEE
Confidence            78899999999999999887765544 444443 344433222   22467889999999998      77888999999


Q ss_pred             ECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE-eCCcCeeE-EEEEEEEee--cCCCCCeEEeCCCC-c
Q psy15128         72 QEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL-SVAGSTTV-RAFLQVTSV--EDTPPPIVQVGPSN-Q  146 (292)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~-~~~~~~~~-~~~l~v~~~--~~~~~~~~~~~~~~-~  146 (292)
                      +++..+...     ........+.|.|.+++.+|+|.|+|.+. +..+.... ...+.+...  ....+|.+...+.. .
T Consensus       145 k~~~~l~~~-----~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~  219 (315)
T 1itb_B          145 KDCKPLLLD-----NIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETM  219 (315)
T ss_dssp             ETTEECCCC-----SSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEE
T ss_pred             ECCEECCCc-----cceEeecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcE
Confidence            999876421     11223446699999999999999999999 66665421 223332222  11234555444432 4


Q ss_pred             eecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCcc-----EEEcC---------CCcEEEEeeecCC-CCCCcce
Q psy15128        147 TLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTR-----INVSS---------SGSLQIDVLRDDF-RAEPKDT  208 (292)
Q Consensus       147 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~-----~~~~~---------~~~l~i~~~~~~d-~g~~~~~  208 (292)
                      .+.+|+.+.|.|.+.+.|.|.+.|+++|..+......     .....         .+.|.|.++..+| +|.|...
T Consensus       220 ~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~  296 (315)
T 1itb_B          220 EVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCF  296 (315)
T ss_dssp             ECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEE
T ss_pred             EEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEE
Confidence            6789999999999999999999999999998775421     11111         1278999999999 9966543

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.93  E-value=2.7e-25  Score=171.86  Aligned_cols=198  Identities=17%  Similarity=0.181  Sum_probs=141.8

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCc-EEeCCCccEEecCCcEEEEEEEeeeCCCe-eEEEECCeEEee
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS-FVVRPQDQKVGLNGIASFQCVAEGSPLPS-VFWTQEGSQVLM   79 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~~~   79 (292)
                      |.+++.+|+|.|+|.+.+..+..... +.|.|..+|. +...+....+.+|+.+.|.|.+.+.+.+. +.|++.+.... 
T Consensus        55 i~~~~~~d~G~Y~C~~~~~~~~~~~~-~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~-  132 (289)
T 3ejj_X           55 TRNATFKNTGTYRCTELEDPMAGSTT-IHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQV-  132 (289)
T ss_dssp             ESSCCGGGCEEEEEECCC-----CEE-EEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEEC-
T ss_pred             EeeeccccCEEEEEEEeccCCcceeE-EEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeec-
Confidence            78899999999999999887775555 8899987766 56677778899999999999998876654 99987444332 


Q ss_pred             ccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe-CCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEe
Q psy15128         80 FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS-VAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPC  158 (292)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~-~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C  158 (292)
                         ....+.....++.|.|.+++.+|+|.|+|.+.+ ..+.......|.|... ...+|.+...+....+.+|+.+.|.|
T Consensus       133 ---~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~-~~~~p~i~~~~~~~~~~~g~~~~l~C  208 (289)
T 3ejj_X          133 ---LRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRV-HPEPPQIKLEPSKLVRIRGEAAQIVC  208 (289)
T ss_dssp             ---CTTCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESS-CCCCCEEEEESSSEECCSSSCEEEEE
T ss_pred             ---CCCccEEECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEEC-CCCCCeEEecCCceEEEeCCcEEEEE
Confidence               122234445567899999999999999999984 3333344455555421 12356677667777778999999999


Q ss_pred             Eecc-CCCCceEEEeCCeeCCCCCccE----EEcCCCcEEEEeeecCCCCCC
Q psy15128        159 QAVG-SPPPHIRWYKNGNSLPPEDTRI----NVSSSGSLQIDVLRDDFRAEP  205 (292)
Q Consensus       159 ~~~~-~p~~~~~W~~~~~~l~~~~~~~----~~~~~~~l~i~~~~~~d~g~~  205 (292)
                      .+.+ .|.+.+.|++++..+.......    .....+.|.|.++..+|+|.|
T Consensus       209 ~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  260 (289)
T 3ejj_X          209 SATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIY  260 (289)
T ss_dssp             EEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEE
T ss_pred             EeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEE
Confidence            9987 6889999999999886532111    011134788888888888743

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.93  E-value=7e-25  Score=171.49  Aligned_cols=199  Identities=19%  Similarity=0.245  Sum_probs=143.1

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEe-eeCCCeeEEEECCeEEeec
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE-GSPLPSVFWTQEGSQVLMF   80 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~   80 (292)
                      |.+++.+|+|.|+|.+.+.........+.|.+..+|.....+....+..++.+.+.|.+. +.|.+.+.|++++..+...
T Consensus        83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~  162 (313)
T 4fqp_A           83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNT  162 (313)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEE
T ss_pred             ECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCcccccc
Confidence            789999999999999875443333333788888888877777677777888999999765 6788999999998765321


Q ss_pred             cCC-CcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEE-eCCCCceecCCCeEEEEe
Q psy15128         81 PGN-AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQ-VGPSNQTLPLHSVAFLPC  158 (292)
Q Consensus        81 ~~~-~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~~~~~~~~~g~~v~l~C  158 (292)
                      ... ..........+.|.|.+...+|+|.|+|.+.|..+.......+.+.+.   .+|.+. .......+..|+.++|.|
T Consensus       163 ~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~---~~P~v~~~~~~~~~~~~g~~v~l~C  239 (313)
T 4fqp_A          163 SQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVY---YPPEVSISGYDNNWYLGQNEATLTC  239 (313)
T ss_dssp             EEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBC---EEEEEEEECCCSCEETTCCCEEEEE
T ss_pred             ceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccc---cCCccccccccceeecCCCeEEEEE
Confidence            100 000111222346899999999999999999998776555544443321   134443 344555567889999999


Q ss_pred             EeccCCCC-ceEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCCCCcc
Q psy15128        159 QAVGSPPP-HIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEPKD  207 (292)
Q Consensus       159 ~~~~~p~~-~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g~~~~  207 (292)
                      .+.++|.| .+.|++++.++...    ....+++|.|.++..+|+|.|..
T Consensus       240 ~~~g~P~p~~v~W~~~~~~l~~~----~~~~~~~L~i~~v~~~d~G~Y~C  285 (313)
T 4fqp_A          240 DARSNPEPTGYNWSTTMGPLPPF----AVAQGAQLLIRPVDKPINTTLIC  285 (313)
T ss_dssp             EEEEESCCCEEEEEETTBSCCTT----EEEETTEEEECCCSSCCEEEEEE
T ss_pred             EecCCCCCcEEEEEECCEECCCc----eEEeCCEEEECcCChhhCEEEEE
Confidence            99999988 59999999988653    22346689999999999986543

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.93  E-value=6.7e-25  Score=179.75  Aligned_cols=241  Identities=13%  Similarity=0.169  Sum_probs=151.2

Q ss_pred             CCccEEecCCcEEEEEEEeeeC--CCeeEEEECC--eEEe---ecc---------CCCcceeEEee-----ecEEEEccC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSP--LPSVFWTQEG--SQVL---MFP---------GNAYGHLHVTQ-----EGTLRIQGV  101 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~~---~~~---------~~~~~~~~~~~-----~~~l~i~~~  101 (292)
                      +....+.+|+.++|.|.+.+.+  .+.+.|+|+.  ....   ...         .....+.....     ...|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (444)
T 1igt_B            7 SGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRL   86 (444)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCC
Confidence            3456788999999999998753  5689999853  2211   100         00123343332     358999999


Q ss_pred             CCCCCeEEEEEEEeCCcCe---eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC-ceEEEeCCee
Q psy15128        102 QKEDAGFFVCSALSVAGST---TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP-HIRWYKNGNS  176 (292)
Q Consensus       102 ~~~d~g~Y~C~~~~~~~~~---~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~~~W~~~~~~  176 (292)
                      +.+|+|.|.|.+.+..+..   .....|.|......++.++...+. ..+.+|+.++|.|.+.+. |.+ .+.|++++..
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~  165 (444)
T 1igt_B           87 KSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLS  165 (444)
T ss_dssp             CGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCC-SSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             CHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEeccc-ccCCCCCcEEEEEEEcceeCCCcEEEEecCCCC
Confidence            9999999999999865431   122345554211122333333333 335789999999999875 766 8999999876


Q ss_pred             CCCC-CccEEE----cCCCcEEEEeeecCCCCCC----------------------------------------cce-E-
Q psy15128        177 LPPE-DTRINV----SSSGSLQIDVLRDDFRAEP----------------------------------------KDT-R-  209 (292)
Q Consensus       177 l~~~-~~~~~~----~~~~~l~i~~~~~~d~g~~----------------------------------------~~~-~-  209 (292)
                      +... ......    ...+.|.|..+..+| |.|                                        +.+ . 
T Consensus       166 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~  244 (444)
T 1igt_B          166 SGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIF  244 (444)
T ss_dssp             TTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEE
T ss_pred             CCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEec
Confidence            3210 000000    011235555555555 522                                        111 0 


Q ss_pred             -------EeCCCceEEEeeCCCCC---C-CCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeE
Q psy15128        210 -------VASGETALLECGPPKGQ---P-EPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWK  278 (292)
Q Consensus       210 -------~~~g~~~~l~C~~~~~~---p-~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~  278 (292)
                             +.+|+.+.|.|.+ .+.   | .+.+.|+++|..+............++.+  .....|.|..+...|+|.|+
T Consensus       245 ~p~~~~~~~~G~~~~L~C~~-~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~v~~~d~G~Y~  321 (444)
T 1igt_B          245 PPKIKDVLMISLSPIVTCVV-VDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTL--RVVSALPIQHQDWMSGKEFK  321 (444)
T ss_dssp             CCCHHHHHCTTSCCEEEEEE-EEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSE--EEEEEEECCHHHHHTTCEEE
T ss_pred             CCchhheeecCCCcEEEEEE-eecccCCCCeEEEEEECCccccCcccccceeCCCCcE--EEEEEEEEcHHHhccCCcEE
Confidence                   2569999999998 565   3 36999999998885332222222222222  12346889999999999999


Q ss_pred             EEEeeccccc
Q psy15128        279 LIAKNIRNQQ  288 (292)
Q Consensus       279 C~a~n~~g~~  288 (292)
                      |.|.|..|..
T Consensus       322 C~a~n~~~~~  331 (444)
T 1igt_B          322 CKVNNKDLPA  331 (444)
T ss_dssp             EEEECTTCSS
T ss_pred             EEEEcCCCCC
Confidence            9999998865

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.93  E-value=1.1e-26  Score=182.03  Aligned_cols=201  Identities=20%  Similarity=0.263  Sum_probs=140.1

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEee----------eCCCeeEEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEG----------SPLPSVFWT   71 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~----------~~~~~v~W~   71 (292)
                      |.+++.+|+|.|+|.+.+..+..... +.|.|..+|.+...+....+..|+.+.|.|.+.+          .|.+.+.|+
T Consensus        65 i~~~~~~d~G~Y~C~~~n~~g~~~~~-~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~  143 (317)
T 2y25_A           65 ITEFSKKDAGIYEVILKDDRGKDKSR-LKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWS  143 (317)
T ss_dssp             ETTCCSTTCSCEEEEEESSSCEEEEE-ECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEE
T ss_pred             EccCCcccCeEEEEEEECCCCcEEEE-EEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEE
Confidence            67899999999999999887765444 5555554443333333344556777788887766          688899999


Q ss_pred             ECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEe----------------ecCCC
Q psy15128         72 QEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS----------------VEDTP  135 (292)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~----------------~~~~~  135 (292)
                      +++..+..  ..............|.|.+++.+|.|.|+|.+.|..+.......+.+..                .....
T Consensus       144 ~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~  221 (317)
T 2y25_A          144 HNGSAIRY--SDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNR  221 (317)
T ss_dssp             ESSSBCCC--CSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             ECCEECCC--CCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCC
Confidence            99876631  1111111111223599999999999999999999877666655554321                11122


Q ss_pred             CCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCC-C---cEEEEeeecCCCCCCc
Q psy15128        136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS-G---SLQIDVLRDDFRAEPK  206 (292)
Q Consensus       136 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~-~---~l~i~~~~~~d~g~~~  206 (292)
                      +......+....+..|+.+.|.|.+.+.|.+.+.|++++..+.... ++.+... +   .|.|.++..+|+|.|.
T Consensus       222 p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  295 (317)
T 2y25_A          222 ARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDD-HCNLKFEAGRTAYFTINGVSTADSGKYG  295 (317)
T ss_dssp             CEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCS-SEEECCBTTTEEEEEEBSCCSTTCEEEE
T ss_pred             CcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCC-cEEEEEcCCCEEEEEECCCCHHHCEEEE
Confidence            3333334555678899999999999999999999999999987653 4444332 4   7999999999988553

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.93  E-value=1.4e-24  Score=178.49  Aligned_cols=241  Identities=12%  Similarity=0.116  Sum_probs=146.7

Q ss_pred             CCccEEecCCcEEEEEEEeeeC--CCeeEEEECC--eE---Eeec---------cCCCcceeEEee-----ecEEEEccC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSP--LPSVFWTQEG--SQ---VLMF---------PGNAYGHLHVTQ-----EGTLRIQGV  101 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~---~~~~---------~~~~~~~~~~~~-----~~~l~i~~~  101 (292)
                      +....+.+|+.++|.|.+.+.+  .+.+.|+|..  ..   +...         ......++....     ...|.|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (457)
T 1hzh_H            7 SGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSL   86 (457)
T ss_dssp             CCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCC
Confidence            4456788999999999998765  6689999842  21   1100         011123444332     248999999


Q ss_pred             CCCCCeEEEEEEEeCCc------------CeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CC-Cc
Q psy15128        102 QKEDAGFFVCSALSVAG------------STTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PP-PH  167 (292)
Q Consensus       102 ~~~d~g~Y~C~~~~~~~------------~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~  167 (292)
                      +.+|+|.|+|.+.+..+            .......|.|.... ..+|.+...+....+.+|+.++|.|.+.+. |. +.
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~-~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~  165 (457)
T 1hzh_H           87 RSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSAS-TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT  165 (457)
T ss_dssp             CGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCC-CBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCE
T ss_pred             CcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCC-CCCCeEEecCccccccCCCcEEEEEEEeEEeCCCeE
Confidence            99999999999988754            11223455554311 123444333333446799999999999877 64 78


Q ss_pred             eEEEeCCeeCCCCCccEEEcCCC------cEEEEeeecCCCCCC------------------------------------
Q psy15128        168 IRWYKNGNSLPPEDTRINVSSSG------SLQIDVLRDDFRAEP------------------------------------  205 (292)
Q Consensus       168 ~~W~~~~~~l~~~~~~~~~~~~~------~l~i~~~~~~d~g~~------------------------------------  205 (292)
                      +.|++++..+...........++      .|.|.++..+| |.|                                    
T Consensus       166 v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  244 (457)
T 1hzh_H          166 VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPEL  244 (457)
T ss_dssp             EEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCCC
T ss_pred             EEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCCCCCccc
Confidence            99999986543111111112222      46777777767 722                                    


Q ss_pred             ---cce-E--------EeCCCceEEEeeCCCCCCCC----eEEEeEcCeEeccCCCceEEecCCCccccccccccccccc
Q psy15128        206 ---KDT-R--------VASGETALLECGPPKGQPEP----TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVL  269 (292)
Q Consensus       206 ---~~~-~--------~~~g~~~~l~C~~~~~~p~~----~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  269 (292)
                         +.+ .        +.+|+.+.|.|.+ .+.|++    .|.|+++|.++............++.+...  ..|.|...
T Consensus       245 ~~~p~v~~~~p~~~~~~~~G~~v~L~C~~-~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~--~~l~i~~~  321 (457)
T 1hzh_H          245 LGGPSVFLFPPKPKDTLMISRTPEVTCVV-VDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVV--SVLTVLHQ  321 (457)
T ss_dssp             SSSCEEEEECCCHHHHHCTTSCCCEEEEE-ECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEE--EEECCCHH
T ss_pred             cCCceEEeECcCchhhcccCCceEEEEEE-EcccCCCCceEEEEEeCCccccccccccceecCCCcEEEE--EEEEECHH
Confidence               111 0        2359999999998 576543    999999999885222112222223322211  12333333


Q ss_pred             cccccceeEEEEeeccccc
Q psy15128        270 GALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       270 ~~~~~g~y~C~a~n~~g~~  288 (292)
                      ...|+|.|+|.|.|..+..
T Consensus       322 d~~d~G~Y~C~a~n~~~~~  340 (457)
T 1hzh_H          322 DWLNGKEYKCKVSNKALPA  340 (457)
T ss_dssp             HHHHTCCEEEEEECTTSSS
T ss_pred             HccCCCcEEEEEeCCCCCC
Confidence            3445999999999876654

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.93  E-value=2.8e-25  Score=176.38  Aligned_cols=204  Identities=15%  Similarity=0.211  Sum_probs=118.2

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEe----CCCccEEecCCcEEEEEEE-----eeeCCCeeEEEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVV----RPQDQKVGLNGIASFQCVA-----EGSPLPSVFWTQ   72 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~----~~~~~~~~~g~~~~l~C~~-----~~~~~~~v~W~~   72 (292)
                      |.+++.+|+|.|+|.+.|..+..... +.|.|..+|....    .+....+.+|+.+.|.|.+     .+.|.+.+.|++
T Consensus        83 i~~~~~~D~G~Y~C~a~n~~~~~~~~-~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k  161 (349)
T 4dep_C           83 FRPTLLNDTGNYTCMLRNTTYCSKVA-FPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYM  161 (349)
T ss_dssp             ESSCCGGGCEEEEEEEECSSCEEEEE-EEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEE
T ss_pred             EccCChhhCEEEEEEEecCCceEEEE-EEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEee
Confidence            67899999999999999987776665 8888887554221    2334567889999999974     667889999999


Q ss_pred             CCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCee--EEEEEEEEeecCC---CCCeEEeCCCCc-
Q psy15128         73 EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT--VRAFLQVTSVEDT---PPPIVQVGPSNQ-  146 (292)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~--~~~~l~v~~~~~~---~~~~~~~~~~~~-  146 (292)
                      ++..+.     ... ........|.|.+++.+|+|.|+|.+.|..+...  ....+.+.+....   .+|.+...+... 
T Consensus       162 ~~~~l~-----~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~  235 (349)
T 4dep_C          162 GCYKIQ-----NFN-NVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVV  235 (349)
T ss_dssp             TTEECC-----SCS-SEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC-------
T ss_pred             CCEECC-----Ccc-ceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCcee
Confidence            998662     111 1223346899999999999999999999763332  2333444332211   134443333222 


Q ss_pred             -eecCCCeEEEEeEec----cCCCCceEEEeCCeeCCCCCccEEE------c------CCCcEEEEeeecCCC-CCCcce
Q psy15128        147 -TLPLHSVAFLPCQAV----GSPPPHIRWYKNGNSLPPEDTRINV------S------SSGSLQIDVLRDDFR-AEPKDT  208 (292)
Q Consensus       147 -~~~~g~~v~l~C~~~----~~p~~~~~W~~~~~~l~~~~~~~~~------~------~~~~l~i~~~~~~d~-g~~~~~  208 (292)
                       .+.+|+.+.|.|.+.    +.|.+.+.|++++..+.....++..      .      ....|.|.++..+|. |.|...
T Consensus       236 ~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~  315 (349)
T 4dep_C          236 YEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCH  315 (349)
T ss_dssp             ---------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEE
T ss_pred             EEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEE
Confidence             678999999999998    5688999999999887652111111      0      122489999999999 987655


Q ss_pred             EEeC
Q psy15128        209 RVAS  212 (292)
Q Consensus       209 ~~~~  212 (292)
                      ....
T Consensus       316 a~N~  319 (349)
T 4dep_C          316 ARSA  319 (349)
T ss_dssp             EECS
T ss_pred             EEcC
Confidence            4433

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.93  E-value=2.3e-25  Score=162.31  Aligned_cols=125  Identities=18%  Similarity=0.241  Sum_probs=83.2

Q ss_pred             ccEEecCCcEEEEEE---EeeeCCCeeEEEECCeEEee------------ccCCCcceeE---EeeecEEEEccCCCCCC
Q psy15128         45 DQKVGLNGIASFQCV---AEGSPLPSVFWTQEGSQVLM------------FPGNAYGHLH---VTQEGTLRIQGVQKEDA  106 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~---~~~~~~~~v~W~~~~~~~~~------------~~~~~~~~~~---~~~~~~l~i~~~~~~d~  106 (292)
                      .+.+..|+.++|.|.   +.+.|.+.+.|+|++.....            .......+..   ......|.|.+++.+|+
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            456889999999995   45678899999997632110            0000111111   12234799999999999


Q ss_pred             eEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCC
Q psy15128        107 GFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNG  174 (292)
Q Consensus       107 g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~  174 (292)
                      |.|+|.+.|..+.......|.|..     +|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++
T Consensus        82 G~Y~C~a~n~~g~~~~~~~l~V~~-----p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~  144 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTKQEHLSVVK-----PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPE  144 (203)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEE-----EEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC-
T ss_pred             eEEEEEEEcCCCcEEEEEEEEecC-----CceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECC
Confidence            999999999888777777776653     445544444455566666777777666666667776544

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.93  E-value=1.2e-25  Score=177.41  Aligned_cols=205  Identities=24%  Similarity=0.331  Sum_probs=116.7

Q ss_pred             CcccCCcCCCeeEEEEEEecccccccccEEEEEeCCC----------------------cEEe----CCCccEEecCCcE
Q psy15128          1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP----------------------SFVV----RPQDQKVGLNGIA   54 (292)
Q Consensus         1 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p----------------------~~~~----~~~~~~~~~g~~~   54 (292)
                      .|.+++.+|+|.|+|.+.+. +..... +.|.|...+                      .+..    ......+.+|+.+
T Consensus        64 ~i~~v~~~D~G~Y~C~a~n~-~~~~~~-~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v  141 (334)
T 1ry7_B           64 QVLNASHEDSGAYSCRQRLT-QRVLCH-FSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTV  141 (334)
T ss_dssp             ---------------------------------------------------------CCCCSCCTTCCCCEEEEETTCCE
T ss_pred             EEeecccccCEEEEEEEEeC-CeEEEE-EEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcE
Confidence            37789999999999999988 554444 777776443                      2211    1123567889999


Q ss_pred             EEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCC
Q psy15128         55 SFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDT  134 (292)
Q Consensus        55 ~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~  134 (292)
                      .|.|.+.+.|.+.+.|++++..+..... ............|.|.+++.+|+|.|+|.+.|..+.......|.|......
T Consensus       142 ~l~C~~~g~p~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~  220 (334)
T 1ry7_B          142 RFRCPAAGNPTPSISWLKNGREFRGEHR-IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPH  220 (334)
T ss_dssp             EEECCCCCSSCCEEECCBTTBCCCTTSS-TTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCS
T ss_pred             EEEEEccCCCCCeEEEEECCEECccccc-ccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCC
Confidence            9999999999999999999876532111 001111123458999999999999999999998887766666766542211


Q ss_pred             CCCeEEe-CCCCceecCCCeEEEEeEeccCCCCceEEEe----CCeeCCCCCcc-EEEcC----------CCcEEEEeee
Q psy15128        135 PPPIVQV-GPSNQTLPLHSVAFLPCQAVGSPPPHIRWYK----NGNSLPPEDTR-INVSS----------SGSLQIDVLR  198 (292)
Q Consensus       135 ~~~~~~~-~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~----~~~~l~~~~~~-~~~~~----------~~~l~i~~~~  198 (292)
                       +|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++    +|..+...... .....          ...|.|.++.
T Consensus       221 -~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~  299 (334)
T 1ry7_B          221 -RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVT  299 (334)
T ss_dssp             -SCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCC
T ss_pred             -CCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCC
Confidence             233322 3456678899999999999999999999999    67766543221 11111          1279999999


Q ss_pred             cCCCCCCcceE
Q psy15128        199 DDFRAEPKDTR  209 (292)
Q Consensus       199 ~~d~g~~~~~~  209 (292)
                      .+|+|.|....
T Consensus       300 ~~d~G~Y~C~a  310 (334)
T 1ry7_B          300 FEDAGEYTCLA  310 (334)
T ss_dssp             TTSCSEEEEEE
T ss_pred             HHHCEEEEEEE
Confidence            99999665443

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.93  E-value=2.3e-25  Score=176.14  Aligned_cols=201  Identities=17%  Similarity=0.242  Sum_probs=147.3

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEE--eCCCccEEecCCcEEEEEE-----EeeeCCCeeEEEECC
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFV--VRPQDQKVGLNGIASFQCV-----AEGSPLPSVFWTQEG   74 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~--~~~~~~~~~~g~~~~l~C~-----~~~~~~~~v~W~~~~   74 (292)
                      |.+++.+|+|.|+|.+.+..+..... +.|.|..++...  .......+.+|+.+.|.|.     +.+.|.+.+.|++++
T Consensus        85 i~~v~~~D~G~Y~C~~~n~~g~~~~~-~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g  163 (339)
T 3o4o_C           85 LLPALQEDSGTYVCTTRNASYCDKMS-IELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDS  163 (339)
T ss_dssp             ESSBCTTCCEEEECCEEETTEEEEEE-EEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESS
T ss_pred             ECCCCcccCEEEEEEEECCcceEEEE-EEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCC
Confidence            67899999999999999988766555 888888765432  2223346889999999999     778888999999998


Q ss_pred             eEEeeccCCCcceeEEe-eecEEEEccCCCCCCeEEEEEEEeCCcC----eeEEEEEEEEeecCCCCCeEEeCCCCceec
Q psy15128         75 SQVLMFPGNAYGHLHVT-QEGTLRIQGVQKEDAGFFVCSALSVAGS----TTVRAFLQVTSVEDTPPPIVQVGPSNQTLP  149 (292)
Q Consensus        75 ~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~C~~~~~~~~----~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~  149 (292)
                      ..+..    ...+.... ..+.|.|.+++.+|.|.|+|.+.|..+.    ....+.|.|.......+|.+...+....+.
T Consensus       164 ~~~~~----~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~  239 (339)
T 3o4o_C          164 LLLDK----DNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISAS  239 (339)
T ss_dssp             CBCCT----TCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCC
T ss_pred             eeCCC----CCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEec
Confidence            76531    11122222 2358999999999999999999987764    344555655543323355666666666788


Q ss_pred             CCCeEEEEeEe---ccCC-CCceEEEeCCeeCCCCC--------ccEEEcCCC------cEEEEeeecCCC-CCCcc
Q psy15128        150 LHSVAFLPCQA---VGSP-PPHIRWYKNGNSLPPED--------TRINVSSSG------SLQIDVLRDDFR-AEPKD  207 (292)
Q Consensus       150 ~g~~v~l~C~~---~~~p-~~~~~W~~~~~~l~~~~--------~~~~~~~~~------~l~i~~~~~~d~-g~~~~  207 (292)
                      +|+.+.|.|.+   .+.| .+.+.|++++..+....        .++....++      .|.|.++..+|. |.|..
T Consensus       240 ~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C  316 (339)
T 3o4o_C          240 LGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKC  316 (339)
T ss_dssp             CCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEE
T ss_pred             cCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEE
Confidence            99999999999   8888 78899999998765321        223333344      799999999997 86643

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.3e-24  Score=168.11  Aligned_cols=194  Identities=15%  Similarity=0.144  Sum_probs=142.7

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCC-CeeEEE-ECCeEEee
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPL-PSVFWT-QEGSQVLM   79 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~v~W~-~~~~~~~~   79 (292)
                      |.+++.+|+|.|+|.+.+  |.  ...+.|.|..+|.....+....+.+|+.+.|.|.+.+ |. +.+.|+ +++..+. 
T Consensus        61 i~~~~~~d~G~Y~C~~~n--g~--~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~-  134 (290)
T 2o26_X           61 QEKAEATRTGTYTCSNSN--GL--TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLP-  134 (290)
T ss_dssp             ETTCCGGGCEEEEEEESS--SC--EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCC-
T ss_pred             EeccCHHhCeEEEEEeeC--Cc--cEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCC-
Confidence            678999999999999998  33  3448889988777666667788889999999999985 76 899995 5665442 


Q ss_pred             ccCCCcceeEEeeecEEEEccCCCCCCe-EEEEEEEeCCcCee-EEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEE
Q psy15128         80 FPGNAYGHLHVTQEGTLRIQGVQKEDAG-FFVCSALSVAGSTT-VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLP  157 (292)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~  157 (292)
                          ...+........|.|.+++.+|.| .|+|.+.|..+... ....+.|.. ....+|.+...+....+.+|+.+.|.
T Consensus       135 ----~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~-~~~~~P~i~~~~~~~~v~~G~~v~l~  209 (290)
T 2o26_X          135 ----TDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVRE-AIKAIPVVSVPETSHLLKKGDTFTVV  209 (290)
T ss_dssp             ----TTCEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEEC-CCCSCCEEECSCSBCCCCTTCCEEEE
T ss_pred             ----CCCceeeCCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEe-CCCCCCccccCCCcceEecCCcEEEE
Confidence                123344455568999999999999 99999999744322 234555542 12346677777777788999999999


Q ss_pred             eEeccCCCCc-eEEEeCCeeC----CCCCc-cE----EEcCCCcEEEEeeecCCCCCCc
Q psy15128        158 CQAVGSPPPH-IRWYKNGNSL----PPEDT-RI----NVSSSGSLQIDVLRDDFRAEPK  206 (292)
Q Consensus       158 C~~~~~p~~~-~~W~~~~~~l----~~~~~-~~----~~~~~~~l~i~~~~~~d~g~~~  206 (292)
                      |.+.+.|.+. +.|++++..+    ..... .+    .....+.|.|.++..+|+|.|.
T Consensus       210 C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~  268 (290)
T 2o26_X          210 CTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFM  268 (290)
T ss_dssp             EEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEE
T ss_pred             EEEecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEE
Confidence            9999998886 9999998773    22111 11    1123457999999998888554

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.92  E-value=1.8e-23  Score=151.67  Aligned_cols=174  Identities=17%  Similarity=0.321  Sum_probs=112.8

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeC-CCeeEEEE-CCeEEeeccCCCcceeEE----eeecEEEEccCCCCCCeEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSP-LPSVFWTQ-EGSQVLMFPGNAYGHLHV----TQEGTLRIQGVQKEDAGFF  109 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~v~W~~-~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~g~Y  109 (292)
                      ++.+...+....+.+|+.++|.|.+.+.+ .+.+.|++ ++..+...    ..+...    .....|.|.+++.+|+|.|
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~----~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y   77 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPN----QQRISVVWNDDDSSTLTIYNANIDDAGIY   77 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCB----SSSEEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCC----CCeEEEEECCCCceEEEEccCCcccCEEE
Confidence            34566677788899999999999998876 78999999 77665321    112222    2346899999999999999


Q ss_pred             EEEEEeCCc-CeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcC
Q psy15128        110 VCSALSVAG-STTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSS  188 (292)
Q Consensus       110 ~C~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~  188 (292)
                      +|.+.+..+ .......|.+.     .+|.+...+....                                         
T Consensus        78 ~C~~~~~~~~~~~~~~~l~v~-----~~p~~~~~~~~~~-----------------------------------------  111 (191)
T 1epf_A           78 KCVVTAEDGTQSEATVNVKIF-----QKLMFKNAPTPQE-----------------------------------------  111 (191)
T ss_dssp             EEEEEETTTEEEEEEEEEEEE-----CCSEEEECCSSEE-----------------------------------------
T ss_pred             EEEEEcCCCcceEEEEEEEee-----cCceEecCCCcEe-----------------------------------------
Confidence            999998764 22333333332     1333333333333                                         


Q ss_pred             CCcEEEEeeecCCCCCCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCcccccccccccccc
Q psy15128        189 SGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSV  268 (292)
Q Consensus       189 ~~~l~i~~~~~~d~g~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~  268 (292)
                                           +.+|+.+.|.|.+ .+.|.+.+.|+++|..+......++....++        .|.|..
T Consensus       112 ---------------------~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~--------~L~i~~  161 (191)
T 1epf_A          112 ---------------------FKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILKKDVRFIVLSNN--------YLQIRG  161 (191)
T ss_dssp             ---------------------CCTTSCEEECCEE-ECSSCCEEEEEETTEEGGGGCCTTEEECTTS--------CEEETT
T ss_pred             ---------------------ecCCCeEEEEEEE-CCCCCCEEEEEECCEEeeccCCceEEEecCC--------eEEECC
Confidence                                 3345555666655 4555556666666655543333333332222        477888


Q ss_pred             ccccccceeEEEEeecccccc
Q psy15128        269 LGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       269 ~~~~~~g~y~C~a~n~~g~~~  289 (292)
                      +..+|+|.|+|.|.|..|...
T Consensus       162 ~~~~d~G~Y~C~a~n~~~~~~  182 (191)
T 1epf_A          162 IKKTDEGTYRCEGRILARGEI  182 (191)
T ss_dssp             CCGGGCEEEEEEEEEGGGTEE
T ss_pred             CChhhCEEEEEEEEEecceeE
Confidence            999999999999999996543

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.92  E-value=1.5e-23  Score=152.74  Aligned_cols=179  Identities=19%  Similarity=0.330  Sum_probs=128.3

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeee---cEEEEccCCCCCCeEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE---GTLRIQGVQKEDAGFFVC  111 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~Y~C  111 (292)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..     ..+......   ..|.|.+++.+|+|.|+|
T Consensus         6 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   80 (197)
T 3lcy_A            6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQ-----SRKYKMSSDGRTHTLTVMTEEQEDEGVYTC   80 (197)
T ss_dssp             EEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECC-----CSSEEEEESSSEEEEEEECCSGGGCEEEEE
T ss_pred             CCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCC-----CccEEEEeCCCEEEEEEecCCccCCEEEEE
Confidence            456777788888999999999999999999999999999987631     112222222   379999999999999999


Q ss_pred             EEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCCCc
Q psy15128        112 SALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGS  191 (292)
Q Consensus       112 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~  191 (292)
                      .+.+..+.......+.+...     |.                     ....             . .            
T Consensus        81 ~~~n~~~~~~~~~~l~v~~~-----p~---------------------~~~~-------------~-~------------  108 (197)
T 3lcy_A           81 IATNEVGEVETSSKLLLQAT-----PQ---------------------FHPG-------------Y-P------------  108 (197)
T ss_dssp             EEECSSCEEEEEEEEEEEEE-----EE---------------------ECTT-------------S-C------------
T ss_pred             EEECCCCceeEEEEEEEEcC-----CC---------------------CCCC-------------c-c------------
Confidence            99987776555555544320     00                     0000             0 0            


Q ss_pred             EEEEeeecCCCCCCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccc
Q psy15128        192 LQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGA  271 (292)
Q Consensus       192 l~i~~~~~~d~g~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  271 (292)
                                  ......+.+|+.+.|.|.+ .+.|.+.+.|++++..+..  ..++.+....     ....|.|..+..
T Consensus       109 ------------~~~~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~~~--~~~~~~~~~~-----~~~~L~i~~~~~  168 (197)
T 3lcy_A          109 ------------LKEKYYGAVGSTLRLHVMY-IGRPVPAMTWFHGQKLLQN--SENITIENTE-----HYTHLVMKNVQR  168 (197)
T ss_dssp             ------------CCSEEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCC--CSSEEEEECS-----SEEEEEESSCCH
T ss_pred             ------------CCcceeecCCCeEEEEEEE-eeeeCCeeEEeECCEECCC--CCceEEEEcC-----CEEEEEEccccc
Confidence                        0123456679999999998 7899999999999998863  3333332221     113688888884


Q ss_pred             -cccceeEEEEeeccccccc
Q psy15128        272 -LSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       272 -~~~g~y~C~a~n~~g~~~~  290 (292)
                       +|+|.|+|.|.|..|..+.
T Consensus       169 ~~d~G~Y~C~a~n~~g~~~~  188 (197)
T 3lcy_A          169 KTHAGKYKVQLSNVFGTVDA  188 (197)
T ss_dssp             HHHCEEEEEEEECSSCEEEE
T ss_pred             hhhCceEEEEEEcCcCceEE
Confidence             8999999999999998764

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.92  E-value=1e-23  Score=152.66  Aligned_cols=179  Identities=19%  Similarity=0.327  Sum_probs=115.9

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....   ..+.....++.|.|.+++.+|+|.|+|.+.+
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~---~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   78 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS---DNRFAMLANNNLQILNINKSDEGIYRCEGRV   78 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCC---CTTEEECTTSCEEETTCCGGGCEEEEEEEEE
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceecc---CCeEEEecCCCEEEeeCCHhHCcEEEEEEEE
Confidence            4667777888899999999999999988889999999987664221   2334444566899999999999999999998


Q ss_pred             CCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCCCcEEEE
Q psy15128        116 VAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQID  195 (292)
Q Consensus       116 ~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~  195 (292)
                      ..+.......+.+.+..   +|.+...+..                                                  
T Consensus        79 ~~~~~~~~~~~~l~v~~---~p~~~~~~~~--------------------------------------------------  105 (189)
T 2v5t_A           79 EARGEIDFRDIIVIVNV---PPAISMPQKS--------------------------------------------------  105 (189)
T ss_dssp             TTTTEEEEEEEEEEEEE---EEEEECSCCE--------------------------------------------------
T ss_pred             cCCCceEEEEEEEEecC---CCCccccccc--------------------------------------------------
Confidence            76544332222222110   1111111000                                                  


Q ss_pred             eeecCCCCCCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccc
Q psy15128        196 VLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDD  275 (292)
Q Consensus       196 ~~~~~d~g~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g  275 (292)
                                ....+..|+.+.|.|.+ .+.|.+.+.|+++|..+..  ..++.....       ...|.|..+..+|+|
T Consensus       106 ----------~~~~~~~g~~v~l~C~~-~g~p~~~v~W~~~g~~~~~--~~~~~~~~~-------~~~L~i~~~~~~d~G  165 (189)
T 2v5t_A          106 ----------FNATAERGEEMTFSCRA-SGSPEPAISWFRNGKLIEE--NEKYILKGS-------NTELTVRNIINSDGG  165 (189)
T ss_dssp             ----------EEEETTSCCCEEEECEE-EEESCCEEEEEETTEECCC--SSSEEEETT-------TTEEEECSCCGGGCE
T ss_pred             ----------ccccccCCCcEEEEEEE-ccCCCCeEEEEECCEECcC--CCcEEEecC-------CCEEEEcCCChhhCe
Confidence                      01223456777777776 5666677777777776642  222222221       125788889999999


Q ss_pred             eeEEEEeeccccccc
Q psy15128        276 QWKLIAKNIRNQQQH  290 (292)
Q Consensus       276 ~y~C~a~n~~g~~~~  290 (292)
                      .|+|.|+|..|....
T Consensus       166 ~Y~C~a~n~~g~~~~  180 (189)
T 2v5t_A          166 PYVCRATNKAGEDEK  180 (189)
T ss_dssp             EEEEEEEETTEEEEE
T ss_pred             eEEEEEEeCCCceeE
Confidence            999999999998764

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.92  E-value=2.6e-23  Score=151.34  Aligned_cols=137  Identities=20%  Similarity=0.399  Sum_probs=96.4

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEe-eeCCCeeEEEECCeEEeeccCCCcceeEEee--------ecEEEEccCCCCCC
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAE-GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ--------EGTLRIQGVQKEDA  106 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~--------~~~l~i~~~~~~d~  106 (292)
                      +|.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+..... ...+.....        .+.|.|.+++.+|+
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   80 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADS-TQTQVPLGEDEQDDWIVVSQLRITSLQLSDT   80 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEE-EEEEEECSSSTTSEEEEEEEEEESSCCSTTC
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCC-CceEEEEccccccceeeccEEEEEeccccCC
Confidence            57788888899999999999999998 889899999999987632110 000111111        46899999999999


Q ss_pred             eEEEEEEEeCCcCeeEE-EEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCC-ceEEEeCCeeCC
Q psy15128        107 GFFVCSALSVAGSTTVR-AFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP-HIRWYKNGNSLP  178 (292)
Q Consensus       107 g~Y~C~~~~~~~~~~~~-~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~~~W~~~~~~l~  178 (292)
                      |.|+|.+.+..+..... ..|.|.     .+|.+...+....+.+|+.+.|.|.+.+.|.| .+.|++++..+.
T Consensus        81 G~Y~C~~~~~~~~~~~~~~~l~V~-----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~  149 (195)
T 2c5d_C           81 GQYQCLVFLGHQTFVSQPGYVGLE-----GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLA  149 (195)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEC-----CSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSS
T ss_pred             cEEEEEEEeCCCceecccEEEEEe-----cCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEecc
Confidence            99999999876543222 444443     24555555555666677777777777777666 677777665543

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.92  E-value=1.1e-23  Score=155.83  Aligned_cols=187  Identities=33%  Similarity=0.550  Sum_probs=125.8

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecE----EEEccCCCCCCeEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT----LRIQGVQKEDAGFFV  110 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~----l~i~~~~~~d~g~Y~  110 (292)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... ...+.... ++.    |.|.+++.+|+|.|+
T Consensus         8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~-~~~~~~~~-~~~~~~~l~i~~v~~~d~G~Y~   85 (217)
T 2vr9_A            8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEK-KSHRVQFK-DGALFFYRTMQGKKEQDGGEYW   85 (217)
T ss_dssp             CCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSS-SSSEEECT-TSCEEESSCCBSSSCBCCEEEE
T ss_pred             CCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCc-cceeEEec-CCceEEEEEeccCCcccCceEE
Confidence            467888888888999999999999999988899999999987643211 11112111 222    368889999999999


Q ss_pred             EEEEeCCcCee-EEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCC
Q psy15128        111 CSALSVAGSTT-VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS  189 (292)
Q Consensus       111 C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~  189 (292)
                      |.+.+..+... ....+.+...                                ++ .         +.           
T Consensus        86 C~~~n~~g~~~~~~~~l~v~~~--------------------------------~~-~---------~~-----------  112 (217)
T 2vr9_A           86 CVAKNRVGQAVSRHASLQIAVL--------------------------------RD-D---------FR-----------  112 (217)
T ss_dssp             EEEEETTEEEECCCEEEEECEE--------------------------------CC-S---------CS-----------
T ss_pred             EEEecCCCccccccceEEEEEe--------------------------------CC-C---------cE-----------
Confidence            99998765431 1223332210                                00 0         00           


Q ss_pred             CcEEEEeeecCCCCCCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccc
Q psy15128        190 GSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVL  269 (292)
Q Consensus       190 ~~l~i~~~~~~d~g~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  269 (292)
                                   ..+....+..|+.+.|.|.+..+.|.+.+.|+++|..+.....  ........+.......|.|..+
T Consensus       113 -------------~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~  177 (217)
T 2vr9_A          113 -------------VEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKA--MSFGASSRVRIVDGGNLLISNV  177 (217)
T ss_dssp             -------------BCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCC--C---CCCSEEEETTTEEEESSC
T ss_pred             -------------ECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccc--cccccCCcEEecCCCcEEEeeC
Confidence                         0012345678999999999757889999999999998853221  1111111111122336889999


Q ss_pred             cccccceeEEEEeecccccccC
Q psy15128        270 GALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       270 ~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      ..+|+|.|+|.|+|..|....+
T Consensus       178 ~~~d~G~Y~C~a~N~~G~~~~~  199 (217)
T 2vr9_A          178 EPIDEGNYKCIAQNLVGTRESS  199 (217)
T ss_dssp             CSTTCEEEEEEEEETTEEEECC
T ss_pred             CHHHCeEEEEEEEcccceeccc
Confidence            9999999999999999988654

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.92  E-value=1e-23  Score=151.78  Aligned_cols=132  Identities=24%  Similarity=0.504  Sum_probs=89.3

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEee-----ecEEEEccCCCCCCeEEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ-----EGTLRIQGVQKEDAGFFV  110 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~Y~  110 (292)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...     .......     ...|.|.+++.+|+|.|+
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~-----~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~   76 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNL-----DQLYIPVSEQHWIGFLSLKSVERSDAGRYW   76 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSS-----EEEEEEEETTEEEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCC-----CceEEEecCCCceEEEEEeecCcccCeEEE
Confidence            355666777788999999999999999888999999998776311     1111111     358999999999999999


Q ss_pred             EEEEeCCcCe-eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCC-ceEEEeCCeeC
Q psy15128        111 CSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP-HIRWYKNGNSL  177 (292)
Q Consensus       111 C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~~~W~~~~~~l  177 (292)
                      |.+.+..+.. .....|.|..     +|.+...+....+.+|+.+.|.|.+.+.|.| .+.|++++..+
T Consensus        77 C~~~~~~~~~~~~~~~l~V~~-----~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~  140 (182)
T 1rhf_A           77 CQVEDGGETEISQPVWLTVEG-----VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKI  140 (182)
T ss_dssp             EEESSCTTCEECCCEEEEEEC-----SCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEEC
T ss_pred             EEEEcCCCcEEEEEEEEEEec-----CCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeEC
Confidence            9999875542 3345555542     4455555555556666666666766666666 66666665544

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.92  E-value=7.4e-24  Score=158.33  Aligned_cols=127  Identities=24%  Similarity=0.389  Sum_probs=86.6

Q ss_pred             CccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEE
Q psy15128         44 QDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  123 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~  123 (292)
                      ....+.+|+.+.|.|.+.+.|.+.+.|++++..+...... ...........|.|.+++.+|+|.|+|.+.+..+.....
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~  105 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRI-GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT  105 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGST-TCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             eeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccc-cceeeecCcceEEEecCCcccCEEEEEEEecccCccccc
Confidence            5678899999999999999999999999999876422211 111223344589999999999999999999987776666


Q ss_pred             EEEEEEeecCCCCCeEE-eCCCCceecCCCeEEEEeEeccCCCCceEEEe
Q psy15128        124 AFLQVTSVEDTPPPIVQ-VGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYK  172 (292)
Q Consensus       124 ~~l~v~~~~~~~~~~~~-~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~  172 (292)
                      ..+.|...... ++.+. ..+....+..|+.+.|.|.+.+.|.+.+.|++
T Consensus       106 ~~l~V~~~~~~-~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~  154 (231)
T 3ojm_B          106 YHLDVVERSRH-RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIK  154 (231)
T ss_dssp             EEEEEECCCCC-CCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEE
T ss_pred             EEEEEEcCCCC-CCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEE
Confidence            66666532211 12221 12344455566666666666666666666666

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.91  E-value=3.2e-25  Score=181.07  Aligned_cols=242  Identities=12%  Similarity=0.176  Sum_probs=151.5

Q ss_pred             CCCccEEecCCcEEEEEEEeeeC--CCeeEEEECC--eEEe--ecc-C---------CCcceeEEee-----ecEEEEcc
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGSP--LPSVFWTQEG--SQVL--MFP-G---------NAYGHLHVTQ-----EGTLRIQG  100 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~~--~~~-~---------~~~~~~~~~~-----~~~l~i~~  100 (292)
                      .+....+.+|++++|.|.+.+.+  .+.+.|+|+.  ....  ... .         ....+.....     ...|.|.+
T Consensus         5 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   84 (434)
T 1igy_B            5 ESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSS   84 (434)
T ss_dssp             CCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECS
T ss_pred             CCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECC
Confidence            34556788999999999998753  5689999863  2211  000 0         0112333322     34799999


Q ss_pred             CCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC-ceEEEeCCeeCC
Q psy15128        101 VQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP-HIRWYKNGNSLP  178 (292)
Q Consensus       101 ~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~~~W~~~~~~l~  178 (292)
                      ++.+|+|.|+|.+.+..+.......|.|......++.++...+. ..+.+|+.++|.|.+.+. |.+ .+.|++++..+.
T Consensus        85 v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~  163 (434)
T 1igy_B           85 LTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSG  163 (434)
T ss_dssp             BCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCC-CCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSS
T ss_pred             CChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCc-cccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCC
Confidence            99999999999998754333334455554322222333333333 345789999999999876 666 899999987532


Q ss_pred             CCC-ccEE----EcCCCcEEEEeeecCCCCCC----------------------------------cce-------E--E
Q psy15128        179 PED-TRIN----VSSSGSLQIDVLRDDFRAEP----------------------------------KDT-------R--V  210 (292)
Q Consensus       179 ~~~-~~~~----~~~~~~l~i~~~~~~d~g~~----------------------------------~~~-------~--~  210 (292)
                      ... ....    ....+.|.|..+..+| |.|                                  +.+       .  +
T Consensus       164 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v  242 (434)
T 1igy_B          164 VHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTL  242 (434)
T ss_dssp             EEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHH
T ss_pred             eEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhc
Confidence            100 0000    0011246666666666 622                                  011       1  5


Q ss_pred             eCCCceEEEeeCCCCCC----CCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        211 ASGETALLECGPPKGQP----EPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       211 ~~g~~~~l~C~~~~~~p----~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      .+|+.+.|.|.+ .+.+    .+.|.|+++|..+............++.+.  ....|.|..+...|+|.|+|.|.|..|
T Consensus       243 ~~G~~~~L~C~~-~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~~  319 (434)
T 1igy_B          243 LITVTPKVTCVV-VDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFR--VVSALPIMHQDWLNGKEFKCRVNSAAF  319 (434)
T ss_dssp             STTSCCEEEEEE-CCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCC--CCCCEECCHHHHHHTCCCBCCBCCSSC
T ss_pred             ccCCCcEEEEEE-eccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEE--EEEEEEECHHHccCCCcEEEEEECCCC
Confidence            679999999999 5663    458999999987742221111111222221  233688899999999999999999999


Q ss_pred             cc
Q psy15128        287 QQ  288 (292)
Q Consensus       287 ~~  288 (292)
                      ..
T Consensus       320 ~~  321 (434)
T 1igy_B          320 PA  321 (434)
T ss_dssp             SS
T ss_pred             CC
Confidence            65

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.91  E-value=8.3e-23  Score=147.98  Aligned_cols=123  Identities=21%  Similarity=0.336  Sum_probs=86.1

Q ss_pred             CCcEEeCCCccEEec-CCcEEEEEEEeeeCC--CeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEE
Q psy15128         36 PPSFVVRPQDQKVGL-NGIASFQCVAEGSPL--PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS  112 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~-g~~~~l~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~  112 (292)
                      +|.+.. +....+.+ |+.+.|.|.+.+.|.  +.+.|++++..+..  ..    . ...+..|.|.+++.+|+|.|+|.
T Consensus         3 ~P~i~~-~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~--~~----~-~~~~~~L~i~~~~~~d~G~Y~C~   74 (190)
T 2wv3_A            3 EPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTA--TR----K-NASNMEYRINKPRAEDSGEYHCV   74 (190)
T ss_dssp             CCEEEE-CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTT--CC----B-CCSEEEEEESSCCGGGCEEEEEE
T ss_pred             CCcccc-cceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcc--cc----e-EeccEEEEEecCCcccCEEEEEE
Confidence            455555 33455556 999999999998876  78999999987631  11    1 11457899999999999999999


Q ss_pred             EEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEe
Q psy15128        113 ALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYK  172 (292)
Q Consensus       113 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~  172 (292)
                      +.+. +.......|.|..     +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++
T Consensus        75 ~~n~-~~~~~~~~l~V~~-----~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~  128 (190)
T 2wv3_A           75 YHFV-SAPKANATIEVKA-----APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRK  128 (190)
T ss_dssp             EEET-TEEEEEEEEEEEC-----CCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEE
T ss_pred             EEeC-CcccccEEEEEec-----CCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEE
Confidence            9998 6666666666652     3444444444556666666666666666666666666

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.91  E-value=3.3e-24  Score=167.57  Aligned_cols=195  Identities=15%  Similarity=0.173  Sum_probs=134.1

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeC------------CCcEEeCCC-ccEEecCCcEEEEEEEe-eeCCCe
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA------------PPSFVVRPQ-DQKVGLNGIASFQCVAE-GSPLPS   67 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~------------~p~~~~~~~-~~~~~~g~~~~l~C~~~-~~~~~~   67 (292)
                      |.+++.+|+|.|+|.+.|..|... . +.|.|..            +|.+...+. ...+.+|+.+.|.|.+. +.|.+.
T Consensus        62 I~~~~~~D~G~Y~C~~~n~~g~~~-s-~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~  139 (312)
T 2y23_A           62 FKDLGMDDLGIYSCDVTDTDGIAS-S-YLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAK  139 (312)
T ss_dssp             ESSCCGGGCEEEEEEESSSCCCCE-E-EEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCE
T ss_pred             ECcCCccCCEEEEEEEEeCCCcEE-E-EEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCE
Confidence            779999999999999998776433 3 5666642            555444333 67788999999999998 789999


Q ss_pred             eEEEECCeEEeeccCCCcceeEEee-----ecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEee-----------
Q psy15128         68 VFWTQEGSQVLMFPGNAYGHLHVTQ-----EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSV-----------  131 (292)
Q Consensus        68 v~W~~~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~-----------  131 (292)
                      +.|++++..+...     .+.....     ...|.|.+++.+|+|.|+|.+.+...  .....+.+...           
T Consensus       140 v~W~~~~~~i~~~-----~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  212 (312)
T 2y23_A          140 VNYIFNEKEIFEG-----PKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKA--TNHSTVVLVGDVFKKLQKEAEF  212 (312)
T ss_dssp             EEEEETTEEECSS-----SSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSC--EEEEEEEECTHHHHHHHHHHHH
T ss_pred             EEEEECCEECeeC-----CcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCc--eEEEEEEEcchhhhhhcccccc
Confidence            9999999876421     1122221     22499999999999999999976433  22233332100           


Q ss_pred             -----cCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCC-ceEEEeCCeeCCCCCccEEEcC-CCcEEEEeeecCCCCC
Q psy15128        132 -----EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP-HIRWYKNGNSLPPEDTRINVSS-SGSLQIDVLRDDFRAE  204 (292)
Q Consensus       132 -----~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~~~W~~~~~~l~~~~~~~~~~~-~~~l~i~~~~~~d~g~  204 (292)
                           ....+|.+.... ...+.+|+.+.|.|.+.+.|.+ .+.|++++..+.... ++.... ...|.|.++..+|+|.
T Consensus       213 ~~~~~~~~~~p~~~~~~-~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~-~~~~~~~~~~L~I~~v~~~d~G~  290 (312)
T 2y23_A          213 QRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE-KHDFKDGICTLLITEFSKKDAGI  290 (312)
T ss_dssp             HHHHHHHHHSSEEEEEE-EEEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEEC-CC----CEEEEEECSCSGGGCEE
T ss_pred             cccchhhccCCceeecc-eEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCC-cEEEECCEEEEEECcCCHHHCEE
Confidence                 001123333222 2568899999999999999888 899999999887432 222222 2589999999999885


Q ss_pred             Ccc
Q psy15128        205 PKD  207 (292)
Q Consensus       205 ~~~  207 (292)
                      |..
T Consensus       291 Y~C  293 (312)
T 2y23_A          291 YEV  293 (312)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            533

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.91  E-value=5.4e-23  Score=156.60  Aligned_cols=181  Identities=18%  Similarity=0.248  Sum_probs=137.2

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEE-eeeCCCeeEEEECCeEEeec
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA-EGSPLPSVFWTQEGSQVLMF   80 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~   80 (292)
                      |.+++.+|+|.|+|.+.+..+.   ..+.|.|..++. ...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.. 
T Consensus        52 i~~~~~~d~G~Y~C~~~~~~~s---~~~~l~v~~~~~-~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~-  126 (262)
T 3rjd_A           52 ITSASVNDSGEYRCQRGLSGRS---DPIQLEIHRGWL-LLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKF-  126 (262)
T ss_dssp             ESSCCGGGCEEEEEEESSSCCC---CCEEEEEECSSE-EEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEE-
T ss_pred             EecCCcccCeEEEEEEecCCcc---ccEEEEEeccce-EecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccc-
Confidence            6789999999999999875443   237888887654 344556678899999999999 6677889999999987631 


Q ss_pred             cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEe
Q psy15128         81 PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA  160 (292)
Q Consensus        81 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~  160 (292)
                               ......|.|.+++.+|.|.|+|.+.+..+.......+.|..  ..+++.+...+ ...+.+|+.+.|.|.+
T Consensus       127 ---------~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~--~~~~p~~~~~~-~~~~~~g~~~~l~C~~  194 (262)
T 3rjd_A          127 ---------FHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKE--LFPAPVLNASV-TSPLLEGNLVTLSCET  194 (262)
T ss_dssp             ---------EEECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEEC--SSCCCEEEESS-CSSEETTCCEEEEEEC
T ss_pred             ---------cCCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEecc--CCCCCeEeecC-ceeecCCCeEEEEeEc
Confidence                     22356899999999999999999998876555555555543  33466666655 5568899999999999


Q ss_pred             ccCCC-Cc----eEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCCCC
Q psy15128        161 VGSPP-PH----IRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEP  205 (292)
Q Consensus       161 ~~~p~-~~----~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g~~  205 (292)
                      .+.|. +.    +.|++++..+..      ......|.|.++..+|+|.|
T Consensus       195 ~~~p~~p~~~~~~~w~~~~~~~~~------~~~~~~L~i~~v~~~d~G~Y  238 (262)
T 3rjd_A          195 KLLLQRPGLQLYFSFYMGSKTLRG------RNTSSEYQILTARREDSGLY  238 (262)
T ss_dssp             CCCCC-----EEEEEEETTEEEEE------EESCCEEEESSCCGGGCEEE
T ss_pred             ccCCCCCCccEEEEEEeCCcEecc------cCCCceEEEEEechhhCeEE
Confidence            98875 43    789999887643      13456799999998888844

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.91  E-value=9e-23  Score=150.40  Aligned_cols=179  Identities=29%  Similarity=0.554  Sum_probs=123.0

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecE-----EEEccCCCCCCeEEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT-----LRIQGVQKEDAGFFV  110 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-----l~i~~~~~~d~g~Y~  110 (292)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...............++.     |.|.+++.+|+|.|+
T Consensus         9 pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   88 (212)
T 2v9r_A            9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYV   88 (212)
T ss_dssp             EEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEE
T ss_pred             CcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEE
Confidence            567777888889999999999999999999999999999876433221111122222232     445567899999999


Q ss_pred             EEEEeCCcCe-eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCC
Q psy15128        111 CSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS  189 (292)
Q Consensus       111 C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~  189 (292)
                      |.+.+..+.. .....+.|...                                +. .         +.           
T Consensus        89 C~~~n~~g~~~~~~~~l~V~~~--------------------------------~~-~---------~~-----------  115 (212)
T 2v9r_A           89 CVARNYLGEAVSHDASLEVAIL--------------------------------RD-D---------FR-----------  115 (212)
T ss_dssp             EEEEETTEEEECCCEEEEECEE--------------------------------CS-S---------CS-----------
T ss_pred             EEEECCCCceeecceEEEEEec--------------------------------cc-c---------ce-----------
Confidence            9999876533 12223332210                                00 0         00           


Q ss_pred             CcEEEEeeecCCCCCCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccc
Q psy15128        190 GSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVL  269 (292)
Q Consensus       190 ~~l~i~~~~~~d~g~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  269 (292)
                                   ..+....+..|+.+.|.|.+..+.|.+.+.|+++|..+... ..++....         ..|.|..+
T Consensus       116 -------------~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~-~~~~~~~~---------~~L~i~~~  172 (212)
T 2v9r_A          116 -------------QNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDK-DERITIRG---------GKLMITYT  172 (212)
T ss_dssp             -------------BCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTT-STTEEEET---------TEEEESSC
T ss_pred             -------------eCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCC-cceEEccC---------CeEEEeeC
Confidence                         00123457789999999997578899999999999988632 22333322         26889999


Q ss_pred             cccccceeEEEEeeccccccc
Q psy15128        270 GALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       270 ~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      ..+|+|.|+|.|.|..|....
T Consensus       173 ~~~d~G~Y~C~a~N~~g~~~s  193 (212)
T 2v9r_A          173 RKSDAGKYVCVGTNMVGERES  193 (212)
T ss_dssp             CGGGCEEEEEEEEETTEEEEC
T ss_pred             CHhhCeeEEEEEecccCceec
Confidence            999999999999999998643

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.91  E-value=7.6e-23  Score=168.88  Aligned_cols=241  Identities=13%  Similarity=0.189  Sum_probs=143.3

Q ss_pred             eCCCccEEecCCcEEEEEEEeeeC--CCeeEEEECC--eEE--e-ec-c--------CCCcceeEEee-----ecEEEEc
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGSP--LPSVFWTQEG--SQV--L-MF-P--------GNAYGHLHVTQ-----EGTLRIQ   99 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~--~-~~-~--------~~~~~~~~~~~-----~~~l~i~   99 (292)
                      ..+....+.+|++++|.|.+.+.+  .+.+.|+|..  ...  . .. .        .....++....     ...|.|.
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   85 (475)
T 1iga_A            6 EQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLS   85 (475)
T ss_pred             ccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEEC
Confidence            345677889999999999998754  5689999853  111  1 00 0        01123333322     3479999


Q ss_pred             cCCCCCCeEEEEEEEeCCcC------eeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CC-C-ceEE
Q psy15128        100 GVQKEDAGFFVCSALSVAGS------TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PP-P-HIRW  170 (292)
Q Consensus       100 ~~~~~d~g~Y~C~~~~~~~~------~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~-~~~W  170 (292)
                      +++.+|+|.|.|.+.+..+.      ......|.|.... ..+|.+...+. ..+.+|+.++|.|.+.+. |. + .+.|
T Consensus        86 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~-~~~P~i~~~~~-~~~~~g~~v~L~C~~~g~~P~~p~~v~W  163 (475)
T 1iga_A           86 SLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSAS-PTSPKVFPLSL-CSTQPDGNVVIACLVQGFFPQEPLSVTW  163 (475)
T ss_pred             CCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCC-CcCCeEEecCc-cccCCCCeEEEEEEEeeecCCCceEEEE
Confidence            99999999999999986542      1223455554311 12333333222 223689999999999887 55 4 8999


Q ss_pred             EeCCeeCCCCC-ccEEEcCCC------cEEEEeeecCCCCCC--------------------------------------
Q psy15128        171 YKNGNSLPPED-TRINVSSSG------SLQIDVLRDDFRAEP--------------------------------------  205 (292)
Q Consensus       171 ~~~~~~l~~~~-~~~~~~~~~------~l~i~~~~~~d~g~~--------------------------------------  205 (292)
                      ++++....... .......++      .|.|..+..+|+|.|                                      
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~  243 (475)
T 1iga_A          164 SESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPS  243 (475)
T ss_pred             cCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCCC
Confidence            99875321100 000000111      234444444444411                                      


Q ss_pred             ---cce--------EEeCCCceEEEeeCCCCCCC---CeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccc
Q psy15128        206 ---KDT--------RVASGETALLECGPPKGQPE---PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGA  271 (292)
Q Consensus       206 ---~~~--------~~~~g~~~~l~C~~~~~~p~---~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  271 (292)
                         +..        .+.+|+.+.|.|.+ .+.++   +.|.|  ++..+............++.+.  ....|.|..+..
T Consensus       244 ~~~p~v~~~~p~~~~~~~G~~v~L~C~~-~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~--~~~~L~I~~~~~  318 (475)
T 1iga_A          244 CCHPRLSLHRPALEDLLLGSEANLTCTL-TGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYS--VSSVLPGCAEPW  318 (475)
T ss_pred             CCCcEEEEcCCChHHhccCCceEEEEEE-EcccCCCceEEEE--CCCCcCCccccCceECCCCCEE--EEEEEEEchHHh
Confidence               001        14689999999998 56544   69999  4444421111111111122221  234688999999


Q ss_pred             cccceeEEEEeeccccc
Q psy15128        272 LSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       272 ~~~g~y~C~a~n~~g~~  288 (292)
                      .|+|.|+|.|.|..|..
T Consensus       319 ~d~G~Y~C~a~n~~~~~  335 (475)
T 1iga_A          319 NHGKTFTCTAAYPESKT  335 (475)
T ss_pred             ccCCcEEEEEEcCCCCC
Confidence            99999999999999875

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.91  E-value=4.9e-24  Score=166.32  Aligned_cols=199  Identities=18%  Similarity=0.217  Sum_probs=137.0

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEE--eCCCccEEecCCcEEEEEEE-eeeCCCeeEEEECCeEEe
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFV--VRPQDQKVGLNGIASFQCVA-EGSPLPSVFWTQEGSQVL   78 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~--~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~   78 (292)
                      |.+++.+|+|.|+|.+.+..+......+.+.+...|...  ..+.......|+.+.|.|.+ .+.|.+.+.|++++..+.
T Consensus        78 I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~  157 (308)
T 4fom_A           78 LHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEME  157 (308)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCC
T ss_pred             EccCCHHHCEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccc
Confidence            789999999999999998644444443777777766544  34445555678899999975 578999999999987653


Q ss_pred             eccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEe-CCCCceecCCCeEEEE
Q psy15128         79 MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQV-GPSNQTLPLHSVAFLP  157 (292)
Q Consensus        79 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~-~~~~~~~~~g~~v~l~  157 (292)
                      ..... .........+.|.|..+..+|.|.|+|.+.|..+.......+.+.+.   .+|.+.. ......+..|+.++|.
T Consensus       158 ~~~~~-~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~---~~P~~~~~~~~~~~~~~g~~v~l~  233 (308)
T 4fom_A          158 STTTS-FPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQ---YAPEVSVTGYDGNWFVGRKGVNLK  233 (308)
T ss_dssp             EEEEE-CTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCC---EEEEECCBCCCSCEETTCCSCEEE
T ss_pred             cccce-eeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEe---cCCeeEEcccceeeeeccccEEEE
Confidence            21110 11111223457999999999999999999998776655544443321   1333332 3344556788999999


Q ss_pred             eEeccCCCC-ceEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCCCCcc
Q psy15128        158 CQAVGSPPP-HIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEPKD  207 (292)
Q Consensus       158 C~~~~~p~~-~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g~~~~  207 (292)
                      |.+.+.|.| .+.|+|++..+....   .......|.|.++..+|+|.|..
T Consensus       234 C~~~g~P~p~~v~W~k~~~~~~~~~---~~~~~~~l~i~~v~~~d~G~Y~C  281 (308)
T 4fom_A          234 CNADANPPPFKSVWSRLDGQWPDGL---LASDNTLHFVHPLTFNYSGVYIC  281 (308)
T ss_dssp             CCEEEESCEEEEECCBSSSCCCSSC---BCSTTEEECCSCCCSCCCSEEEE
T ss_pred             EEEecCCCCcEEEEEECCeECCCcE---EEcCCeEEEECCCChhhCEEEEE
Confidence            999999888 699999998876532   12222345677888999986543

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.91  E-value=7.4e-23  Score=150.83  Aligned_cols=185  Identities=18%  Similarity=0.315  Sum_probs=119.9

Q ss_pred             cEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeec-------cCCCcceeEEeeecEEEEccCCCCCCeEEE
Q psy15128         38 SFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMF-------PGNAYGHLHVTQEGTLRIQGVQKEDAGFFV  110 (292)
Q Consensus        38 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~-------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~  110 (292)
                      .+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...       ......+.... ...|.|.+++.+|+|.|+
T Consensus         3 ~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~L~i~~v~~~D~G~Y~   81 (212)
T 1f97_A            3 SVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS-SSGITFSSVTRKDNGEYT   81 (212)
T ss_dssp             EEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE-TTEEEESCCCGGGCEEEE
T ss_pred             eEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEee-ceeEEEcccCcccCeEEE
Confidence            3445566778899999999999998888899999987553210       01111222222 378999999999999999


Q ss_pred             EEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCCC
Q psy15128        111 CSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG  190 (292)
Q Consensus       111 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~  190 (292)
                      |.+.+..+.......+.+.+..   +                           |..               ...      
T Consensus        82 C~~~~~~g~~~~~~~~~l~V~~---~---------------------------p~~---------------~~~------  110 (212)
T 1f97_A           82 CMVSEEGGQNYGEVSIHLTVLV---P---------------------------PSK---------------PTI------  110 (212)
T ss_dssp             EEEEETTSSSEEEEEEEEEEEB---C---------------------------CCC---------------CEE------
T ss_pred             EEEEccCCCcccEEEEEEEEEc---C---------------------------CCC---------------ccc------
Confidence            9999876633333333332211   0                           000               000      


Q ss_pred             cEEEEeeecCCCCCCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCe-EeccCCCceEEecCCCccccccccccccccc
Q psy15128        191 SLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ-FIDLESSKRVSILGDPWFDSRRSRSIFGSVL  269 (292)
Q Consensus       191 ~l~i~~~~~~d~g~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  269 (292)
                          .          ....+.+|+.+.|.|.+..+.|.+.+.|++++. .+.......................|.|..+
T Consensus       111 ----~----------~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  176 (212)
T 1f97_A          111 ----S----------VPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPV  176 (212)
T ss_dssp             ----E----------CCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSC
T ss_pred             ----C----------CccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEecCCCceEEEEec
Confidence                0          012466789999999933889999999999998 7753322211111111111122346889999


Q ss_pred             cccccceeEEEEeeccccc
Q psy15128        270 GALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       270 ~~~~~g~y~C~a~n~~g~~  288 (292)
                      ..+|+|.|+|.|.|..|..
T Consensus       177 ~~~d~G~Y~C~a~n~~g~~  195 (212)
T 1f97_A          177 TAFDSGEYYCQAQNGYGTA  195 (212)
T ss_dssp             CGGGCEEEEEEEECSSSCC
T ss_pred             ChhhCcEEEEEEccccCCc
Confidence            9999999999999999987

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.91  E-value=2.3e-23  Score=163.88  Aligned_cols=200  Identities=19%  Similarity=0.319  Sum_probs=123.6

Q ss_pred             cccCCcCCCeeEEEEEEeccccc----ccccEEEEEeCCCcE-EeCCCccEEecCCcEEEEEEEeeeCCC--eeEEEECC
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGER----ETKPALLTVHAPPSF-VVRPQDQKVGLNGIASFQCVAEGSPLP--SVFWTQEG   74 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~----~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~--~v~W~~~~   74 (292)
                      |.+++.+|+|.|+|.+.+..+..    ....+.|.|..+|.. .+......+.+|+.+.|.|.+.+.|++  .+.|++++
T Consensus        78 I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g  157 (327)
T 2wng_A           78 ISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNG  157 (327)
T ss_dssp             ECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             EccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECC
Confidence            78999999999999999875531    123377888765432 122234567889999999999988765  89999999


Q ss_pred             eEEeeccCC---CcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe-eEEEEEEEEeecCCCCCeEEeCCCCceecC
Q psy15128         75 SQVLMFPGN---AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQTLPL  150 (292)
Q Consensus        75 ~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~  150 (292)
                      ..+......   ......+...+.|.|.....+|.|.|+|.+.|..+.. .......+... ...+|.+...+..  +.+
T Consensus       158 ~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~-v~~~P~i~~~~~~--~~~  234 (327)
T 2wng_A          158 NELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSET-IRVPPTLEVTQQP--VRA  234 (327)
T ss_dssp             EECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGT-BCBCCEEEEEEEC--CSS
T ss_pred             EEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccc-cCCCCEEEEecCC--cCC
Confidence            776321100   0001112233468888888888899999999987652 22222222111 1224445443333  779


Q ss_pred             CCeEEEEeEeccC-CCC-ceEEEeCCeeCCCCC-ccEEEcCCCc------EEEEeeecCCCCC
Q psy15128        151 HSVAFLPCQAVGS-PPP-HIRWYKNGNSLPPED-TRINVSSSGS------LQIDVLRDDFRAE  204 (292)
Q Consensus       151 g~~v~l~C~~~~~-p~~-~~~W~~~~~~l~~~~-~~~~~~~~~~------l~i~~~~~~d~g~  204 (292)
                      |+.+.|.|.+.+. |++ .+.|+++|.++.... .......++.      |.|..+..+|+|.
T Consensus       235 G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~  297 (327)
T 2wng_A          235 ENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVK  297 (327)
T ss_dssp             TTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCE
T ss_pred             CCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCE
Confidence            9999999999885 444 799999999875421 2233334443      4555555666663

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.91  E-value=5.2e-23  Score=151.34  Aligned_cols=188  Identities=14%  Similarity=0.259  Sum_probs=119.5

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeec-------cCCCcceeEEeeecEEEEccCCCCCCeE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMF-------PGNAYGHLHVTQEGTLRIQGVQKEDAGF  108 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~-------~~~~~~~~~~~~~~~l~i~~~~~~d~g~  108 (292)
                      +..+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...       ......+.... ...|.|.+++.+|+|.
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~L~i~~~~~~d~G~   82 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL-PTGITFKSVTREDTGT   82 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE-TTEEECSCCCTTSCSE
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEee-ccEEEEeeCCHHHCcE
Confidence            344555667788999999999999998888899999987553210       01112223222 3789999999999999


Q ss_pred             EEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcC
Q psy15128        109 FVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSS  188 (292)
Q Consensus       109 Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~  188 (292)
                      |+|.+.+..+.......+.+.+..   +|.+...+                                             
T Consensus        83 Y~C~~~~~~g~~~~~~~~~l~V~~---~p~~~~~~---------------------------------------------  114 (209)
T 1nbq_A           83 YTCMVSEEGGNSYGEVKVKLIVLV---PPSKPTVN---------------------------------------------  114 (209)
T ss_dssp             EEEEEEETTSSCEECCEEECCEEB---CCCCCCCC---------------------------------------------
T ss_pred             EEEEEecCCCCccceEEEEEEEec---CCcCCCcc---------------------------------------------
Confidence            999999876533332222222110   10000000                                             


Q ss_pred             CCcEEEEeeecCCCCCCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCcccccccccccccc
Q psy15128        189 SGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSV  268 (292)
Q Consensus       189 ~~~l~i~~~~~~d~g~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~  268 (292)
                                       ....+.+|+.+.|.|.+..+.|.+.+.|+++|..+.......................|.|..
T Consensus       115 -----------------~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  177 (209)
T 1nbq_A          115 -----------------IPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDP  177 (209)
T ss_dssp             -----------------CBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESS
T ss_pred             -----------------cccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEe
Confidence                             012355678888888755677777888888877765332221111111111112234688999


Q ss_pred             ccccccceeEEEEeecccccc
Q psy15128        269 LGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       269 ~~~~~~g~y~C~a~n~~g~~~  289 (292)
                      +..+|+|.|+|.|+|..|...
T Consensus       178 ~~~~d~G~Y~C~a~n~~g~~~  198 (209)
T 1nbq_A          178 LSASDTGEYSCEARNGYGTPM  198 (209)
T ss_dssp             CCGGGCCCEEEEEECSSSCCE
T ss_pred             ccccCCeEEEEEEeCCcCccc
Confidence            999999999999999999983

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.91  E-value=1.5e-22  Score=149.85  Aligned_cols=164  Identities=21%  Similarity=0.357  Sum_probs=114.8

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      .+.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..           .....|.|.+++.+|+|.|+|.+.+
T Consensus        18 ~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~-----------~~~~~L~i~~v~~~d~G~Y~C~~~n   86 (218)
T 3k0w_A           18 GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPN-----------GNTSELIFNAVHVKDAGFYVCRVNN   86 (218)
T ss_dssp             -CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTT-----------CCSSEEEETTCCGGGCEEEEEEEEC
T ss_pred             CCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCC-----------CCCCEEEEccCChhhCeEeEEEEEc
Confidence            46777888889999999999999999888899999999987531           1246899999999999999999998


Q ss_pred             CCcCe-eEEEEEEEEeecCC----------CCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccE
Q psy15128        116 VAGST-TVRAFLQVTSVEDT----------PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRI  184 (292)
Q Consensus       116 ~~~~~-~~~~~l~v~~~~~~----------~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~  184 (292)
                      ..+.. .....+.|......          .++.+...+...                                      
T Consensus        87 ~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~--------------------------------------  128 (218)
T 3k0w_A           87 NFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQ--------------------------------------  128 (218)
T ss_dssp             TTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCE--------------------------------------
T ss_pred             CCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCce--------------------------------------
Confidence            76643 33345555421100          001111122222                                      


Q ss_pred             EEcCCCcEEEEeeecCCCCCCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCcccccccccc
Q psy15128        185 NVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSI  264 (292)
Q Consensus       185 ~~~~~~~l~i~~~~~~d~g~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l  264 (292)
                                              .+.+|+.+.|.|.+ .+.|.+.+.|+++|..+.....                ..|
T Consensus       129 ------------------------~v~~G~~v~L~C~~-~g~p~~~v~W~~~~~~~~~~~~----------------~~L  167 (218)
T 3k0w_A          129 ------------------------KLMPGSTLVLQCVA-VGSPIPHYQWFKNELPLTHETK----------------KLY  167 (218)
T ss_dssp             ------------------------EECTTCCEEEECEE-EBSSCCEEEEEETTEECTTCCS----------------SEE
T ss_pred             ------------------------eecCCCcEEEEEEe-cccCCCeEEEEECCEECCCCCC----------------CEE
Confidence                                    34456777777776 6667777777777766642210                147


Q ss_pred             ccccccccccceeEEEEeecccccc
Q psy15128        265 FGSVLGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       265 ~i~~~~~~~~g~y~C~a~n~~g~~~  289 (292)
                      .|..+...|+|.|+|.|.|..|...
T Consensus       168 ~i~~v~~~d~G~Y~C~a~n~~g~~~  192 (218)
T 3k0w_A          168 MVPYVDLEHQGTYWCHVYNDRDSQD  192 (218)
T ss_dssp             EESSCCGGGCEEEEEEEECSSCEEE
T ss_pred             EEeecChhcCEEEEEEEEcCCCCce
Confidence            7888899999999999999988743

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.90  E-value=1e-23  Score=163.21  Aligned_cols=197  Identities=16%  Similarity=0.157  Sum_probs=139.1

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCc-EEeCCCccEEecCCcEEEEEEEeeeCC--CeeEEEECCeEEe
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS-FVVRPQDQKVGLNGIASFQCVAEGSPL--PSVFWTQEGSQVL   78 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~v~W~~~~~~~~   78 (292)
                      |.+++.+|+|.|+|.+.+..+..... +.|.|..+|. +...+....+.+|+.+.|.|.+.+ |.  +.+.|++++....
T Consensus        55 i~~~~~~d~G~Y~C~~~n~~~~~~~~-~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~  132 (292)
T 4dkd_C           55 TNNATFQNTGTYRCTEPGDPLGGSAA-IHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPL  132 (292)
T ss_dssp             ESSCCGGGCSCEEECCCC----CCEE-ECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCC
T ss_pred             EcccccccCEEEEEEEccCCCCcceE-EEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCcc
Confidence            78999999999999999887766555 8888988776 455677788999999999999987 43  6899999743321


Q ss_pred             eccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCee-EEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEE
Q psy15128         79 MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT-VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLP  157 (292)
Q Consensus        79 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~  157 (292)
                          ....+........|.|.+++.+|+|.|+|.+.+..+... ....|.|.... ..+|.+...+....+.+|+.+.|.
T Consensus       133 ----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~-~~~p~i~~~~~~~~~~~g~~v~l~  207 (292)
T 4dkd_C          133 ----MRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVI-PGPPALTLVPAELVRIRGEAAQIV  207 (292)
T ss_dssp             ----CSSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCC-CSSCEEEEESSCBCCCSSSCEEEE
T ss_pred             ----ccCCcccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCC-CCCCeEEccCCceeEecCCCEEEE
Confidence                112223334455699999999999999999998765442 24555554321 125666666666667899999999


Q ss_pred             eEeccCCC-CceEEEeCCeeCCCCCccEEEc-----CCCcEEEEeeecCCCCCCc
Q psy15128        158 CQAVGSPP-PHIRWYKNGNSLPPEDTRINVS-----SSGSLQIDVLRDDFRAEPK  206 (292)
Q Consensus       158 C~~~~~p~-~~~~W~~~~~~l~~~~~~~~~~-----~~~~l~i~~~~~~d~g~~~  206 (292)
                      |.+.+.|+ +.+.|++++..+..... ....     ..+.|.|.++..+|+|.|.
T Consensus       208 C~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  261 (292)
T 4dkd_C          208 CSASSVDVNFDVFLQHNNTKLAIPQQ-SDFHNNRYQKVLTLNLDQVDFQHAGNYS  261 (292)
T ss_dssp             EEEEESSSCCEEECCBSSCCCCCCBE-EEEETTEEEEEEEEEESSCCTTSCEEEE
T ss_pred             EEecCCCCceEEEEeCCCcccccCcc-ceeccceeeeEEEEEECccChhcCeEEE
Confidence            99987754 46888898887654321 1111     2247899999988888543

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.90  E-value=3.2e-23  Score=162.29  Aligned_cols=195  Identities=14%  Similarity=0.161  Sum_probs=125.2

Q ss_pred             cccCCcCCCeeEEEEEEeccc----ccccccEEEEEeC---CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVG----ERETKPALLTVHA---PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG   74 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~----~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~   74 (292)
                      |.+++.+|+|.|+|.+.+..+    ......+.|.|..   +|.+...+.. .+.+|+.++|.|.+. .+.+.+.|++++
T Consensus        78 I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~-~~~~~~~w~k~g  155 (316)
T 3vh8_G           78 MSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGP-LVKSGERVILQCWSD-IMFEHFFLHKEG  155 (316)
T ss_dssp             ECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCS-EEETTCCEEEEEEES-SCCSEEEEEETT
T ss_pred             ECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCC-ccCCCCeEEEEEcCC-CCCcEEEEEECC
Confidence            778999999999999986422    2233337777754   3455555544 388999999999995 456689999998


Q ss_pred             eEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe-----eEEEEEEEEeecCCCCCeEEeCCCCceec
Q psy15128         75 SQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST-----TVRAFLQVTSVEDTPPPIVQVGPSNQTLP  149 (292)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~-----~~~~~l~v~~~~~~~~~~~~~~~~~~~~~  149 (292)
                      ..+..... ............|.|.+++.+|+|.|+|.+.|..+..     .....|.|.  ....+|.+...+.. .+.
T Consensus       156 ~~~~~~~~-~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~--~~~~~p~i~~~~~~-~v~  231 (316)
T 3vh8_G          156 ISKDPSRL-VGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVT--GPYEKPSLSAQPGP-KVQ  231 (316)
T ss_dssp             CCSCCEEE-ECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEE--CSSCCCEEEEESCS-CCC
T ss_pred             Ccccccee-eeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEec--CCCCCCeEEeCCCC-eec
Confidence            75421100 0000011235689999999999999999999876631     223334443  33445666555443 578


Q ss_pred             CCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCC---CcEEEEeeecCCCCCC
Q psy15128        150 LHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS---GSLQIDVLRDDFRAEP  205 (292)
Q Consensus       150 ~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~---~~l~i~~~~~~d~g~~  205 (292)
                      +|+.++|.|.+. .|.+.+.|+|+|..+............   +.|.|.++.  |+|.|
T Consensus       232 ~G~~v~L~C~~~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y  287 (316)
T 3vh8_G          232 AGESVTLSCSSR-SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTY  287 (316)
T ss_dssp             TTSCCEEEEEES-SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEE
T ss_pred             CCCcEEEEEECC-CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEE
Confidence            999999999996 467899999999876532111111111   367888777  77743

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.90  E-value=1.5e-23  Score=159.06  Aligned_cols=193  Identities=17%  Similarity=0.194  Sum_probs=107.3

Q ss_pred             CCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeC-----CCeeEEEECC--eEE
Q psy15128          5 VKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSP-----LPSVFWTQEG--SQV   77 (292)
Q Consensus         5 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~-----~~~v~W~~~~--~~~   77 (292)
                      ++++|+|.|+|.+.   |..... +.+.+..++.+...+....+.+|++++|.|.+.+.+     .+.+.|+|++  ..+
T Consensus        11 v~~~dsg~Y~C~a~---g~~~~~-~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~   86 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYSFTN-YWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSP   86 (254)
T ss_dssp             -------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCC
T ss_pred             ecCCccEEEEEcCc---hhhhhh-hhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCc
Confidence            68999999999998   333333 455555567777778888999999999999998876     3799999843  211


Q ss_pred             e--e-----ccCCCcceeEEee---ecEEEEccCCCCCCeEEEEEEEeCCcCee-EEEEEEEEeecCCCCCeEEeCCCCc
Q psy15128         78 L--M-----FPGNAYGHLHVTQ---EGTLRIQGVQKEDAGFFVCSALSVAGSTT-VRAFLQVTSVEDTPPPIVQVGPSNQ  146 (292)
Q Consensus        78 ~--~-----~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~  146 (292)
                      .  .     .......+.....   ...|.|.+++.+|+|.|+|.+.+..+... ....+.|..  ...+|.+...+...
T Consensus        87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~--~~~~P~v~~~~~~~  164 (254)
T 2c1o_A           87 KRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKR--ADAAPTVSIFPPSS  164 (254)
T ss_dssp             EEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECC--CCBCCEEEEECCCH
T ss_pred             eEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECC--CCCCCeeEeecCCh
Confidence            1  0     0111112333322   33899999999999999999988654321 122444432  22345555544433


Q ss_pred             eecCCCeEEEEeEeccC-CC-CceEEEeCCeeCCCC-CccEE--EcCC------CcEEEEeeecCCCC
Q psy15128        147 TLPLHSVAFLPCQAVGS-PP-PHIRWYKNGNSLPPE-DTRIN--VSSS------GSLQIDVLRDDFRA  203 (292)
Q Consensus       147 ~~~~g~~v~l~C~~~~~-p~-~~~~W~~~~~~l~~~-~~~~~--~~~~------~~l~i~~~~~~d~g  203 (292)
                      ....|+.++|.|.+.+. |+ +.+.|+++|.++... .....  ...+      ..|.|.++..+|+|
T Consensus       165 ~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G  232 (254)
T 2c1o_A          165 EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHN  232 (254)
T ss_dssp             HHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCC
T ss_pred             hhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCC
Confidence            34468899999999874 44 459999999988654 11111  1112      25778888777777

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.90  E-value=5.9e-22  Score=149.00  Aligned_cols=135  Identities=27%  Similarity=0.368  Sum_probs=100.5

Q ss_pred             CCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeE
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV  122 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~  122 (292)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+...... ...........|.|.+++.+|+|.|+|.+.+..+....
T Consensus        22 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~  100 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRI-GGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ  100 (241)
T ss_dssp             CCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGST-TCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcc-cceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEE
Confidence            34567889999999999999888999999999876422211 11222334568999999999999999999998777766


Q ss_pred             EEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEe----CCeeCC
Q psy15128        123 RAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYK----NGNSLP  178 (292)
Q Consensus       123 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~----~~~~l~  178 (292)
                      ...+.|......++......+....+.+|+.+.|.|.+.+.|.+.+.|++    ++..+.
T Consensus       101 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~  160 (241)
T 3grw_A          101 TYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVG  160 (241)
T ss_dssp             EEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSC
T ss_pred             EEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccC
Confidence            77777654332333334444566678889999999999888888999998    554443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.89  E-value=1.2e-24  Score=172.47  Aligned_cols=202  Identities=18%  Similarity=0.181  Sum_probs=136.6

Q ss_pred             CCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCccee
Q psy15128          9 DEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHL   88 (292)
Q Consensus         9 D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~   88 (292)
                      |.|.|+|.+.+..    .. +.+.+..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....    ..
T Consensus       136 ~~~~~~C~~~~~l----~~-l~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~----~~  206 (347)
T 2ifg_A          136 PEQKLQCHGQGPL----AH-MPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM----KS  206 (347)
T ss_dssp             GGGCCCCSSSSCS----SC-CCCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC----CC
T ss_pred             cccCCCCCCChHH----hc-CCcccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccc----cc
Confidence            5789999876622    11 333344578888888888899999999999999999999999998865421111    11


Q ss_pred             EEeeecEEEEccCCCCCCe-EEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCc
Q psy15128         89 HVTQEGTLRIQGVQKEDAG-FFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH  167 (292)
Q Consensus        89 ~~~~~~~l~i~~~~~~d~g-~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~  167 (292)
                      .....+.|.|.+++.+|+| .|+|.+.+..+.....+.+.|..                                  +|.
T Consensus       207 ~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~----------------------------------~P~  252 (347)
T 2ifg_A          207 GGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSF----------------------------------PAS  252 (347)
T ss_dssp             CCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBE----------------------------------EEE
T ss_pred             eecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcC----------------------------------CCe
Confidence            2234568999999999999 99999998876554433332210                                  000


Q ss_pred             eEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCCCCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCce
Q psy15128        168 IRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKR  247 (292)
Q Consensus       168 ~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~  247 (292)
                      +  +                                   ...+..|+.+.|.|.+ .|.|.|.+.|+++|..+.......
T Consensus       253 i--~-----------------------------------~~~~~~g~~v~l~C~~-~g~P~p~i~W~~~g~~l~~~~~~~  294 (347)
T 2ifg_A          253 V--Q-----------------------------------LHTAVEMHHWCIPFSV-DGQPAPSLRWLFNGSVLNETSFIF  294 (347)
T ss_dssp             E--E-----------------------------------ECCCEESSSEEEEEEE-EEESCCEEEEEETTEECCCCSSEE
T ss_pred             e--e-----------------------------------eccCccCceEEEEEEe-eecCCCcEEEEeCCEECCCCccee
Confidence            0  0                                   0001246788888887 788888889988888876332222


Q ss_pred             EEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        248 VSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       248 ~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      ................|.|..+..+|+|.|+|.|+|..|.++.+
T Consensus       295 ~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~  338 (347)
T 2ifg_A          295 TEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS  338 (347)
T ss_dssp             EEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             eEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeE
Confidence            22222111111223368899999999999999999999988653

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.89  E-value=1.2e-21  Score=139.97  Aligned_cols=157  Identities=13%  Similarity=0.090  Sum_probs=105.3

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCe-eEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPS-VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA  113 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~  113 (292)
                      .+|.+...+....+.+|+.++|.|.+.+.|.+. +.|++++..+.            .....|.|.+++.+|+|.|+|.+
T Consensus         6 ~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~------------~~~~~L~i~~~~~~d~G~Y~C~~   73 (175)
T 1fnl_A            6 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS------------SQASSYFIDAATVNDSGEYRCQT   73 (175)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEE------------SSCSEEEESSCCGGGCEEEEEEC
T ss_pred             CCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEcc------------CCceEEEEeCCCcccCEEEEEEe
Confidence            356677777777899999999999998887665 88999998763            13568999999999999999999


Q ss_pred             EeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCCCcEE
Q psy15128        114 LSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQ  193 (292)
Q Consensus       114 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~  193 (292)
                      .+..+  .....+.|..     ++..... ...                                               
T Consensus        74 ~n~~~--s~~~~l~V~~-----~~~~~~~-~~~-----------------------------------------------   98 (175)
T 1fnl_A           74 NLSTL--SDPVQLEVHI-----GWLLLQA-PRW-----------------------------------------------   98 (175)
T ss_dssp             SSSCC--CCCEEEEEEC-----SSEEEEC-SCS-----------------------------------------------
T ss_pred             eCCcc--cccEEEEEeC-----CCceeeC-CCc-----------------------------------------------
Confidence            87433  2223333320     1111111 111                                               


Q ss_pred             EEeeecCCCCCCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccc
Q psy15128        194 IDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALS  273 (292)
Q Consensus       194 i~~~~~~d~g~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  273 (292)
                                     .+.+|+.+.|.|.+..+.|.+.+.|+++|..+...      .         ....|.|..+..+|
T Consensus        99 ---------------~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~------~---------~~~~L~i~~v~~~d  148 (175)
T 1fnl_A           99 ---------------VFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF------H---------HNSDFHIPKATLKD  148 (175)
T ss_dssp             ---------------EEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE------E---------ECCCEEESSCCGGG
T ss_pred             ---------------eecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC------C---------CCCEEEEcccChhh
Confidence                           23446667777766222333477777776665210      0         11257888999999


Q ss_pred             cceeEEEEeeccccc
Q psy15128        274 DDQWKLIAKNIRNQQ  288 (292)
Q Consensus       274 ~g~y~C~a~n~~g~~  288 (292)
                      +|.|+|.|.|..|..
T Consensus       149 ~G~Y~C~a~n~~~~~  163 (175)
T 1fnl_A          149 SGSYFCRGLVGSKNV  163 (175)
T ss_dssp             CEEEEEEEEETTEEE
T ss_pred             CeEEEEEEEcCCCCc
Confidence            999999999977654

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.89  E-value=3.4e-21  Score=141.51  Aligned_cols=172  Identities=13%  Similarity=0.158  Sum_probs=109.5

Q ss_pred             CCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeE-----Eee---------ccCCCcceeEEeeecEEEEccCCCCCCe
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQ-----VLM---------FPGNAYGHLHVTQEGTLRIQGVQKEDAG  107 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~-----~~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g  107 (292)
                      .+.+..+.+|+.++|.|...+.+.+.+.|++++..     +..         .......+.....++.|.|.+++.+|+|
T Consensus         5 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G   84 (208)
T 3r4d_A            5 EAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMG   84 (208)
T ss_dssp             EEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCE
T ss_pred             cCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCe
Confidence            34456788999999999987778889999987431     110         0111123444445568999999999999


Q ss_pred             EEEEEEEeCCc-CeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEE
Q psy15128        108 FFVCSALSVAG-STTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINV  186 (292)
Q Consensus       108 ~Y~C~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~  186 (292)
                      .|+|.+.+..+ .......|.|.  .....+.+...+.                                          
T Consensus        85 ~Y~C~~~~~~~~~~~~~~~l~V~--~~~~~p~i~~~~~------------------------------------------  120 (208)
T 3r4d_A           85 VYTLDMTDENYRRTQATVRFHVH--QPVTQPFLQVTNT------------------------------------------  120 (208)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEEE--CCCCCCEEEESCS------------------------------------------
T ss_pred             EEEEEEEcccCceeEEEEEEEec--cCCCCCEEecCCc------------------------------------------
Confidence            99999998743 23333333332  1111111111111                                          


Q ss_pred             cCCCcEEEEeeecCCCCCCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCcccccccccccc
Q psy15128        187 SSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFG  266 (292)
Q Consensus       187 ~~~~~l~i~~~~~~d~g~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i  266 (292)
                                          .  +.+|+.+.|.|.+ .+.| +.+.|+++|..+.  ...++.+..++       ..|.|
T Consensus       121 --------------------~--~~~g~~v~l~C~~-~~~p-p~i~W~~~g~~l~--~~~~~~~~~~~-------~~L~i  167 (208)
T 3r4d_A          121 --------------------T--VKELDSVTLTCLS-NDIG-ANIQWLFNSQSLQ--LTERMTLSQNN-------SILRI  167 (208)
T ss_dssp             --------------------S--CCTTCCEEEEEEC-SCTT-CEEEEEETTEECC--CCSSEEEETTT-------TEEEE
T ss_pred             --------------------e--EeeCCCEEEEEEC-CCCC-CceEEEECCEeCC--CCCCeEEcCCC-------CEEEE
Confidence                                1  3456777777776 5544 5777777777664  22233332221       25888


Q ss_pred             ccccccccceeEEEEeeccccccc
Q psy15128        267 SVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       267 ~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      ..+..+|+|.|+|.|.|..|++..
T Consensus       168 ~~v~~~d~G~Y~C~a~N~~g~~~s  191 (208)
T 3r4d_A          168 DPIKREDAGEYQCEISNPVSVRRS  191 (208)
T ss_dssp             SSCCGGGCEEEEEEEECTTCCEEC
T ss_pred             eccCHHhCeEEEEEEecCCCcccC
Confidence            899999999999999999998753

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.89  E-value=8.4e-22  Score=142.90  Aligned_cols=161  Identities=26%  Similarity=0.471  Sum_probs=126.0

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEe-eecEEEEccCCCCCCeEEEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT-QEGTLRIQGVQKEDAGFFVCSA  113 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~C~~  113 (292)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...    ..+.... ....|.|.+++.+|+|.|+|.+
T Consensus         6 ~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (192)
T 2iep_A            6 KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLF----DTRYSIRENGQLLTILSVEDSDDGIYCCTA   81 (192)
T ss_dssp             EEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTT----CTTEEEEGGGTEEEESSCCGGGCEEEEEEE
T ss_pred             CCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEcccc----CccEEEcCCccEEEEcCCCcccCeEEEEEE
Confidence            3455666666778899999999999999999999999998876321    1222222 3347999999999999999999


Q ss_pred             EeCCcC-eeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCCCcE
Q psy15128        114 LSVAGS-TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSL  192 (292)
Q Consensus       114 ~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l  192 (292)
                      .+..+. ......+.+..     +|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+... .++....++.|
T Consensus        82 ~~~~~~~~~~~~~l~v~~-----~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~-~~~~~~~~~~L  155 (192)
T 2iep_A           82 NNGVGGAVESCGALQVKM-----KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALREN-SRIAVLESGSL  155 (192)
T ss_dssp             ECSSSCCEEEEEEEEEEE-----EEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCC-SSEEECTTSCE
T ss_pred             EcCCCceeEeEEEEEEEe-----CCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCC-CcEEEecCCcE
Confidence            988766 34445566654     455666667778889999999999999999999999999988764 45666677899


Q ss_pred             EEEeeecCCCCCC
Q psy15128        193 QIDVLRDDFRAEP  205 (292)
Q Consensus       193 ~i~~~~~~d~g~~  205 (292)
                      .|.++..+|+|.|
T Consensus       156 ~i~~~~~~d~G~Y  168 (192)
T 2iep_A          156 RIHNVQKEDAGQY  168 (192)
T ss_dssp             EESSCCGGGCEEE
T ss_pred             EEecCChhhCEEE
Confidence            9999999888854

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.88  E-value=1.2e-21  Score=139.87  Aligned_cols=154  Identities=17%  Similarity=0.191  Sum_probs=103.6

Q ss_pred             cEEecCCcEEEEEEEee--eCCCeeEEEECCeEEeeccC-----CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128         46 QKVGLNGIASFQCVAEG--SPLPSVFWTQEGSQVLMFPG-----NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG  118 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~--~~~~~v~W~~~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~  118 (292)
                      +.+.+|++++|.|....  .+.+.|.|+|++..+.....     ....+.....++.|.|.+++.+|+|.|+|.+.|..+
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g   85 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG   85 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred             EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCCC
Confidence            45788999999994332  45668999999976542111     012344444566799999999999999999999887


Q ss_pred             Ce--eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCCCcEEEEe
Q psy15128        119 ST--TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDV  196 (292)
Q Consensus       119 ~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~  196 (292)
                      ..  .....|.|..  ...                             .|.+..                          
T Consensus        86 ~~~~~~~~~l~V~~--~~~-----------------------------~p~i~~--------------------------  108 (176)
T 1hng_A           86 TRILNKALDLRILE--MVS-----------------------------KPMIYW--------------------------  108 (176)
T ss_dssp             CEEEEEEEEEEEEC--CCC-----------------------------CCEEEE--------------------------
T ss_pred             CEEEEEEEEEEEeC--CCC-----------------------------CCEEEe--------------------------
Confidence            75  3333333321  000                             011110                          


Q ss_pred             eecCCCCCCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccce
Q psy15128        197 LRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQ  276 (292)
Q Consensus       197 ~~~~d~g~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~  276 (292)
                                     .+..+.|.|.+ .+.|.|.|.|+++|+++....                  .+.+..+...|+|.
T Consensus       109 ---------------~~~~v~L~C~~-~g~p~p~i~W~~~g~~l~~~~------------------~~~i~~~~~~d~G~  154 (176)
T 1hng_A          109 ---------------ECSNATLTCEV-LEGTDVELKLYQGKEHLRSLR------------------QKTMSYQWTNLRAP  154 (176)
T ss_dssp             ---------------ETTTTEEEEEC-SSCSSCEEEEEETTEEEEEES------------------SSEEEEECSCCSSC
T ss_pred             ---------------cCCcEEEEEEe-cCCCCcEEEEEECCEECCCCC------------------cEEEEEEEccCCeE
Confidence                           01237899998 788889999999998874221                  12334566889999


Q ss_pred             eEEEEeeccccccc
Q psy15128        277 WKLIAKNIRNQQQH  290 (292)
Q Consensus       277 y~C~a~n~~g~~~~  290 (292)
                      |+|.|.|.+|.++.
T Consensus       155 Y~C~a~N~~g~~~~  168 (176)
T 1hng_A          155 FKCKAVNRVSQESE  168 (176)
T ss_dssp             EEEEEEETTEEEEE
T ss_pred             EEEEEEecCCCcee
Confidence            99999999998764

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.88  E-value=2.5e-21  Score=141.55  Aligned_cols=154  Identities=14%  Similarity=0.124  Sum_probs=102.9

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCe-eEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPS-VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      .|.+...+....+.+|+.++|.|.+.+.|.+. +.|++++..+..            ....|.|.+++.+|+|.|+|.+.
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~------------~~~~L~i~~v~~~D~G~Y~C~a~   74 (204)
T 3sgj_C            7 KAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISS------------QASSYFIDAATVDDSGEYRCQTQ   74 (204)
T ss_dssp             BCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESC------------CSSEEEESSCCGGGCEEEEEEET
T ss_pred             CCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEccc------------CccEEEEecccccCCEEEEEEeC
Confidence            45666677778899999999999999887665 999999987631            12689999999999999999987


Q ss_pred             eCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCCCcEEE
Q psy15128        115 SVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI  194 (292)
Q Consensus       115 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i  194 (292)
                      +...  .....|.|..     ++.+...+.                                                  
T Consensus        75 n~~~--s~~~~l~V~~-----~p~~~~~~~--------------------------------------------------   97 (204)
T 3sgj_C           75 LSTL--SDPVQLEVHI-----GWLLLQAPR--------------------------------------------------   97 (204)
T ss_dssp             TSBC--CCCEEEEEEC-----SSEEEECSC--------------------------------------------------
T ss_pred             CCcc--cccEEEEEec-----CceEecCCc--------------------------------------------------
Confidence            6322  2223333321     111111111                                                  


Q ss_pred             EeeecCCCCCCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCcccccccccccccccccccc
Q psy15128        195 DVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSD  274 (292)
Q Consensus       195 ~~~~~~d~g~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~  274 (292)
                                   ..+.+|+.++|.|.+..+.|.+.+.|+++|..+....               ....|.|..+..+|+
T Consensus        98 -------------~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~---------------~~~~L~i~~v~~~D~  149 (204)
T 3sgj_C           98 -------------WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFH---------------HNSDFYIPKATLKDS  149 (204)
T ss_dssp             -------------SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEE---------------ECCCEEESSCCGGGC
T ss_pred             -------------eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeeccc---------------CCceEEECcCCcccC
Confidence                         1344566677777663334556677777666552100               012578889999999


Q ss_pred             ceeEEEEeeccc
Q psy15128        275 DQWKLIAKNIRN  286 (292)
Q Consensus       275 g~y~C~a~n~~g  286 (292)
                      |.|+|.|.|..+
T Consensus       150 G~Y~C~a~n~~~  161 (204)
T 3sgj_C          150 GSYFCRGLVGSK  161 (204)
T ss_dssp             EEEEEEEEETTE
T ss_pred             EEEEEEEEeCCC
Confidence            999999999444

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.87  E-value=2e-22  Score=147.54  Aligned_cols=136  Identities=13%  Similarity=0.172  Sum_probs=104.9

Q ss_pred             CceecCCCeEEEEeEecc-CCCCceEEEeCCeeCCCCCcc-EEEcC-CC--cEEEEeeecCCCCCCcc------------
Q psy15128        145 NQTLPLHSVAFLPCQAVG-SPPPHIRWYKNGNSLPPEDTR-INVSS-SG--SLQIDVLRDDFRAEPKD------------  207 (292)
Q Consensus       145 ~~~~~~g~~v~l~C~~~~-~p~~~~~W~~~~~~l~~~~~~-~~~~~-~~--~l~i~~~~~~d~g~~~~------------  207 (292)
                      ...+.+|+.+.|.|.+.. .|.|.+.|+++|.++...... +.... .+  .|.|.++..+|+|.|..            
T Consensus        11 ~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~Ng~a~~~~~   90 (207)
T 3rbs_A           11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHST   90 (207)
T ss_dssp             EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEECCCeEEEEE
Confidence            456889999999999864 689999999999999765332 22222 13  58999999999995532            


Q ss_pred             -----------------------------------eEEeCCCceEEEeeCCCCC-CCCeEEEeEcCeEeccCCCceEEec
Q psy15128        208 -----------------------------------TRVASGETALLECGPPKGQ-PEPTLHWKKNGQFIDLESSKRVSIL  251 (292)
Q Consensus       208 -----------------------------------~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~g~~~~~~~~~~~~~~  251 (292)
                                                         ..+.+|+.+.|.|.+ .+. |.|.+.|+|+|+++..  +.++...
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~v-~g~~P~p~i~W~k~g~~l~~--~~~~~~~  167 (207)
T 3rbs_A           91 VVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKV-ANIKKETHIVWYKDEREISV--DEKHDFK  167 (207)
T ss_dssp             EEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEEEEEE-ESCCTTCEEEEEETTEEECC--CCCCCCS
T ss_pred             EEEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEEEEEE-eCCCCCCEEEEEECCEECCC--CCceEcC
Confidence                                               346689999999998 777 9999999999999953  2222111


Q ss_pred             CCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        252 GDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       252 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                             .....|.|..+..+|+|.|+|.|.|.+|.++.
T Consensus       168 -------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~  199 (207)
T 3rbs_A          168 -------DGICTLLITEFSKKDAGIYEVILKDDRGKDKS  199 (207)
T ss_dssp             -------SEEEEEEETTCCGGGCEEEEEEEEETTEEEEE
T ss_pred             -------CCEEEEEECCCCcccCEEEEEEEEcCCCEEEE
Confidence                   11235889999999999999999999998864

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.87  E-value=1.7e-21  Score=139.29  Aligned_cols=124  Identities=20%  Similarity=0.297  Sum_probs=79.6

Q ss_pred             eCCCcEEeCCCccEEecCCcEEEEEEEeeeCCC-eeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEE
Q psy15128         34 HAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS  112 (292)
Q Consensus        34 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~  112 (292)
                      ..+|.+...+....+.+|+.++|.|.+.+.+.+ .+.|++++..+.            .....|.|.+++.+|+|.|+|.
T Consensus         2 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~------------~~~~~L~i~~v~~~d~G~Y~C~   69 (176)
T 1f2q_A            2 PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE------------ETNSSLNIVNAKFEDSGEYKCQ   69 (176)
T ss_dssp             --CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECS------------CCSSEEEECSCCGGGCEEEEEE
T ss_pred             CCCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECC------------CCceEEEEeccceecCEEEEEE
Confidence            346777788888889999999999999887764 699999997652            1256899999999999999999


Q ss_pred             EEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEec-cCCCCceEEEeCCeeC
Q psy15128        113 ALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSL  177 (292)
Q Consensus       113 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~~~W~~~~~~l  177 (292)
                      +.+..+..  ...+.|.     .++.... +....+.+|+.+.|.|.+. +.|.+.+.|+++|..+
T Consensus        70 ~~~~~~s~--~~~l~V~-----~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~  127 (176)
T 1f2q_A           70 HQQVNESE--PVYLEVF-----SDWLLLQ-ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEAL  127 (176)
T ss_dssp             CTTSSCCC--CEEEEEE-----CSSEEEE-ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEEC
T ss_pred             cCCccccc--cEEEEEe-----Ccceeec-CCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEE
Confidence            98754432  3344443     1222221 1223445566666666552 3344455555555433

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.87  E-value=2e-21  Score=143.15  Aligned_cols=186  Identities=13%  Similarity=0.138  Sum_probs=110.1

Q ss_pred             ecCCcEEEEEEEeee-CCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128         49 GLNGIASFQCVAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  127 (292)
Q Consensus        49 ~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~  127 (292)
                      ..++.+.|.|.+.+. |.+.+.|++++..+...  .............|.|.+++.+|+|.|+|.+.+..+.......+.
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~--~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~   92 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS--DRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLS   92 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCC--SSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEC
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEEccCC--CeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEE
Confidence            356778888888774 57899999999876421  111111111223699999999999999999999766555444333


Q ss_pred             EEeecCCCCCeEEeCCCCceecCCCeEEEEeE-eccCCCCceEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCCCCc
Q psy15128        128 VTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQ-AVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEPK  206 (292)
Q Consensus       128 v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~-~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g~~~  206 (292)
                      +........          ...     .+.-. ....+.|.+...                                .+.
T Consensus        93 v~~~~~~~~----------~~~-----~~~~~~~~~~~~p~~~~~--------------------------------~~~  125 (212)
T 2r15_A           93 GQAYDEAYA----------EFQ-----RLKQAAIAEKNRARVLGG--------------------------------LPD  125 (212)
T ss_dssp             HHHHHHHHH----------HHH-----HHHHHHHHHHHSCEEEEB--------------------------------CCS
T ss_pred             Eeeccchhh----------hcc-----ccCcccccccCCCccccc--------------------------------CCC
Confidence            221000000          000     00000 000001111000                                012


Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      ...+.+|+.+.|.|.+ .+.|.+.+.|+++|.++.......+....+      ....|.|..+..+|+|.|+|.|.|..|
T Consensus       126 ~~~v~~g~~~~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~a~N~~g  198 (212)
T 2r15_A          126 VVTIQEGKALNLTCNV-WGDPPPEVSWLKNEKALAQTDHCNLKFEAG------RTAYFTINGVSTADSGKYGLVVKNKYG  198 (212)
T ss_dssp             EEEEETTCCEEEEEEE-ECSSCCEEEEEETTEEECCCSSEEEEEETT------TEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             cEEEccCCeEEEEEEE-cCCCCceEEEEECCeECccCCCEEEEEcCC------CEEEEEEcCcchHHCeEEEEEEEcCCC
Confidence            3456677888888887 677878888888887775333222222211      113688899999999999999999999


Q ss_pred             cccc
Q psy15128        287 QQQH  290 (292)
Q Consensus       287 ~~~~  290 (292)
                      ..+.
T Consensus       199 ~~~~  202 (212)
T 2r15_A          199 SETS  202 (212)
T ss_dssp             EEEE
T ss_pred             cEEE
Confidence            8764

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.87  E-value=1.1e-21  Score=155.39  Aligned_cols=192  Identities=18%  Similarity=0.242  Sum_probs=119.2

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeC----CCcEEeCCCccEEecCCcEEEEEEEeee-CC-CeeEEEECCe
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA----PPSFVVRPQDQKVGLNGIASFQCVAEGS-PL-PSVFWTQEGS   75 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~W~~~~~   75 (292)
                      |.+++.+|+|.|+|.+.+..+..... +.|.|..    +|.+...+....+.+|+.++|.|.+.|. |. +.+.|++++.
T Consensus        83 I~~v~~~D~G~Y~C~~~n~~~~~~~~-~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~  161 (344)
T 1za6_B           83 LSSLRSEDTAVYFCTRSLNMAYWGQG-TLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGAL  161 (344)
T ss_dssp             ECSCCGGGCEEEEEEETTTTCEECCC-EEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTB
T ss_pred             ECCCCcccCEEEEEEEecCcceecCc-EEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCc
Confidence            78999999999999998854333333 7888873    4444443333345789999999999986 54 6999999886


Q ss_pred             EEeec--cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEe-------------------ecCC
Q psy15128         76 QVLMF--PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS-------------------VEDT  134 (292)
Q Consensus        76 ~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~-------------------~~~~  134 (292)
                      .+...  .........+...+.|.|.++..+| |.|+|.+.|..+.......+.+.+                   ....
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~  240 (344)
T 1za6_B          162 TSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQP  240 (344)
T ss_dssp             CTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CC
T ss_pred             cCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCC
Confidence            42110  0000000112233479999998888 999999999877654433332110                   0112


Q ss_pred             CCCeEEeCCCCceecCCCeEEEEeEeccC-C-CCceEEEeCCeeCCCCC-ccEEEcCCCcEEEE
Q psy15128        135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGS-P-PPHIRWYKNGNSLPPED-TRINVSSSGSLQID  195 (292)
Q Consensus       135 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~l~~~~-~~~~~~~~~~l~i~  195 (292)
                      .+|.+.+.+.......|..++|.|.+.+. | .+.+.|+++|..+.... .......++++.+.
T Consensus       241 ~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~  304 (344)
T 1za6_B          241 REPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLY  304 (344)
T ss_dssp             BCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEE
T ss_pred             cCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEE
Confidence            23444433332223356679999999885 4 35799999998876421 12223445555443

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.87  E-value=2.7e-21  Score=149.35  Aligned_cols=190  Identities=11%  Similarity=0.110  Sum_probs=118.2

Q ss_pred             cccCCcCCCeeEEEEEEeccccccccc--EEEEEeCCCcEEe-CCCc---cEEecCCcEEEEEEEeeeCCCeeEEEECCe
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKP--ALLTVHAPPSFVV-RPQD---QKVGLNGIASFQCVAEGSPLPSVFWTQEGS   75 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~--~~l~v~~~p~~~~-~~~~---~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~   75 (292)
                      |.+++.+|+|.|+|.+.|..|......  +.|.|..++.... ....   ..+.+|+.+.|.|.+. .|.+.+.|++.+.
T Consensus        55 i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~  133 (289)
T 3mjg_X           55 LTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKG  133 (289)
T ss_dssp             ECSCCGGGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSC
T ss_pred             EccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCC
Confidence            788999999999999999876633222  4444443322111 1111   5688899999999998 6778999998753


Q ss_pred             EEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeE-EEEEEEEeecCCCCCeEEeCCCCceecCCCeE
Q psy15128         76 QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV-RAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVA  154 (292)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~-~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v  154 (292)
                      .....       ........+.    ...|+|.|+|.+.+..+.... ...+.+.  .. .++.+...+....+.+|+.+
T Consensus       134 ~~~~~-------~~~~~~~~~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~--~~-~~p~i~~~~~~~~v~~G~~v  199 (289)
T 3mjg_X          134 DVALP-------VPYDHQRGFS----GIFEDRSYICKTTIGDREVDSDAYYVYRL--QV-SSINVSVNAVQTVVRQGENI  199 (289)
T ss_dssp             CSCCC-------CCEETTTEEE----ECCCSSEEEEEEEETTEEEECCCEEEEEC--CC-CCCCCEEEESCSEEETTSCE
T ss_pred             CCccc-------eeecCCcCee----eeccCcEEEEEEEeCCceeeeeeEEEEec--CC-CCCCcEEeCCcceeEcCCCE
Confidence            22111       0011111121    357999999999876544322 2333333  22 34444445555678999999


Q ss_pred             EEEeEeccCCCCceEEEeCCeeCCCCCccE-EEc------CCCcEEEEeeecCCCCCCc
Q psy15128        155 FLPCQAVGSPPPHIRWYKNGNSLPPEDTRI-NVS------SSGSLQIDVLRDDFRAEPK  206 (292)
Q Consensus       155 ~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~-~~~------~~~~l~i~~~~~~d~g~~~  206 (292)
                      .|.|.+.+.|.+.+.|++++.......... ...      ..+.|.|.++..+|+|.|.
T Consensus       200 ~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  258 (289)
T 3mjg_X          200 TLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYT  258 (289)
T ss_dssp             EEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEE
T ss_pred             EEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEE
Confidence            999999999999999998776543322211 111      1247999999999988553

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.87  E-value=1.2e-21  Score=143.01  Aligned_cols=177  Identities=20%  Similarity=0.282  Sum_probs=118.9

Q ss_pred             CCCccEEecCCcEEEEEE-EeeeCC-CeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         42 RPQDQKVGLNGIASFQCV-AEGSPL-PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~-~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      .+....+.+|+.+.|.|. +.+.|. +.+.|++++..+....  .........++.|.|.+++.+|+|.|+|.+.+..+.
T Consensus        14 ~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~   91 (201)
T 3s97_C           14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITM--DKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSIT   91 (201)
T ss_dssp             CCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCC--SSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGT
T ss_pred             CCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeee--CCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCC
Confidence            346678999999999999 888888 8999999987653211  122223334568999999999999999999986554


Q ss_pred             eeEEE-EEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCCCcEEEEeee
Q psy15128        120 TTVRA-FLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLR  198 (292)
Q Consensus       120 ~~~~~-~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~  198 (292)
                      ..... .+.+....           ..              .....+|.+                        .+.   
T Consensus        92 ~~~~~~~~~~~~~~-----------~~--------------~~~~~~p~~------------------------~~~---  119 (201)
T 3s97_C           92 KSVFSKFIPLIPIP-----------ER--------------TTKPYPADI------------------------VVQ---  119 (201)
T ss_dssp             EEEECCCEEEEEEC-----------CS--------------SCCCEEEEE------------------------EEE---
T ss_pred             cchhhcccceeecc-----------cc--------------ccCCCCCce------------------------Eec---
Confidence            33211 11111100           00              000000000                        000   


Q ss_pred             cCCCCCCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeE
Q psy15128        199 DDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWK  278 (292)
Q Consensus       199 ~~d~g~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~  278 (292)
                            +....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.  ...++...         ...|.|..+...|+|.|+
T Consensus       120 ------~~~~~~~~g~~~~l~C~~-~g~p~p~v~W~~~~~~~~--~~~~~~~~---------~~~L~i~~v~~~d~G~Y~  181 (201)
T 3s97_C          120 ------FKDVYALMGQNVTLECFA-LGNPVPDIRWRKVLEPMP--STAEISTS---------GAVLKIFNIQLEDEGIYE  181 (201)
T ss_dssp             ------CCCEEEETTCCEEEEEEE-EEESCCEEEEEETTBCCC--TTCEEETT---------TTEEEECSCCGGGCEEEE
T ss_pred             ------CCceEEecCCcEEEEEEc-cCCCCCceEEEeCCCcCC--CceeecCC---------CCEEEEccCChhhCEEEE
Confidence                  024567789999999998 888999999999998774  22222211         226889999999999999


Q ss_pred             EEEeeccccccc
Q psy15128        279 LIAKNIRNQQQH  290 (292)
Q Consensus       279 C~a~n~~g~~~~  290 (292)
                      |.|.|..|..+.
T Consensus       182 C~a~n~~g~~~~  193 (201)
T 3s97_C          182 CEAENIRGKDKH  193 (201)
T ss_dssp             EEEEETTEEEEE
T ss_pred             EEEEecCCceee
Confidence            999999998764

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.87  E-value=1.6e-21  Score=143.82  Aligned_cols=171  Identities=16%  Similarity=0.202  Sum_probs=106.1

Q ss_pred             CccEEecCCcEEEEEEEeeeC----CCeeEEEECC----------------eEEeeccCCCcceeEEe------eecEEE
Q psy15128         44 QDQKVGLNGIASFQCVAEGSP----LPSVFWTQEG----------------SQVLMFPGNAYGHLHVT------QEGTLR   97 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~~----~~~v~W~~~~----------------~~~~~~~~~~~~~~~~~------~~~~l~   97 (292)
                      ..+.+.+|+.++|.|.+.+.+    .+.+.|++.+                ............+....      ....|.
T Consensus         8 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~   87 (214)
T 3jz7_A            8 QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASIN   87 (214)
T ss_dssp             EEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEE
T ss_pred             ceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEE
Confidence            456788999999999998766    4689999832                22210000112233332      245799


Q ss_pred             EccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeC
Q psy15128         98 IQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL  177 (292)
Q Consensus        98 i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l  177 (292)
                      |.+++.+|+|.|+|.+.+..+.......|.|...  ...+...   .                                 
T Consensus        88 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~--p~~~~~~---~---------------------------------  129 (214)
T 3jz7_A           88 VTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK--PSGTRCF---V---------------------------------  129 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC--CBSCEEE---E---------------------------------
T ss_pred             EccCChhhCeEEEEEEEeCCCccccEEEEEEEcC--CCCceee---e---------------------------------
Confidence            9999999999999999987765555555554320  0000000   0                                 


Q ss_pred             CCCCccEEEcCCCcEEEEeeecCCCCCCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccc
Q psy15128        178 PPEDTRINVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFD  257 (292)
Q Consensus       178 ~~~~~~~~~~~~~~l~i~~~~~~d~g~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~  257 (292)
                                                   ...+..|+.+.|.|.+..+.|.+.+.|++++...........         
T Consensus       130 -----------------------------~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~---------  171 (214)
T 3jz7_A          130 -----------------------------DGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLA---------  171 (214)
T ss_dssp             -----------------------------ESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGGG---------
T ss_pred             -----------------------------ecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCcccee---------
Confidence                                         001345677777777645677777777774321111111111         


Q ss_pred             cccccccccccccccccceeEEEEeeccccccc
Q psy15128        258 SRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       258 ~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      ......|.|..+..+|+|.|+|.|+|..|.++.
T Consensus       172 ~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~  204 (214)
T 3jz7_A          172 EMTSPVISVKNASSEYSGTYSCTVQNRVGSDQC  204 (214)
T ss_dssp             GTTSSEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             ccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEE
Confidence            111226889999999999999999999998864

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.87  E-value=7.5e-22  Score=143.16  Aligned_cols=143  Identities=22%  Similarity=0.383  Sum_probs=114.1

Q ss_pred             CCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCC-CcEEEEeeecCCCCC----------
Q psy15128        136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS-GSLQIDVLRDDFRAE----------  204 (292)
Q Consensus       136 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~-~~l~i~~~~~~d~g~----------  204 (292)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....++....+ ..|.|.++..+|+|.          
T Consensus         7 ~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~   86 (192)
T 2iep_A            7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVG   86 (192)
T ss_dssp             EEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSS
T ss_pred             CceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcCCC
Confidence            345555566677889999999999998888999999999998765555555444 358999999999982          


Q ss_pred             --------------------CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCcccccccccc
Q psy15128        205 --------------------PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSI  264 (292)
Q Consensus       205 --------------------~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l  264 (292)
                                          +....+..|+.+.|.|.+ .+.|.+.+.|+++|..+.  ...++....++        .|
T Consensus        87 ~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~--~~~~~~~~~~~--------~L  155 (192)
T 2iep_A           87 GAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTT-MGNPKPSVSWIKGDSALR--ENSRIAVLESG--------SL  155 (192)
T ss_dssp             CCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEE-EEESCCEEEEEETTEECC--CCSSEEECTTS--------CE
T ss_pred             ceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEE-eccCCceEEEEeCCEEcc--CCCcEEEecCC--------cE
Confidence                                235567899999999998 889999999999999885  33344333332        58


Q ss_pred             ccccccccccceeEEEEeecccccc
Q psy15128        265 FGSVLGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       265 ~i~~~~~~~~g~y~C~a~n~~g~~~  289 (292)
                      .|..+...|+|.|+|.|.|..|...
T Consensus       156 ~i~~~~~~d~G~Y~C~a~n~~g~~~  180 (192)
T 2iep_A          156 RIHNVQKEDAGQYRCVAKNSLGTAY  180 (192)
T ss_dssp             EESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEecCChhhCEEEEEEEEcCCCcEE
Confidence            8999999999999999999999874

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.87  E-value=2.2e-20  Score=155.28  Aligned_cols=243  Identities=12%  Similarity=0.137  Sum_probs=138.7

Q ss_pred             CCCccEEecCCcEEEEEEEeeeCC----CeeEEEECC--eEE--ee--cc-------CCCcceeEEee-----ecEEEEc
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGSPL----PSVFWTQEG--SQV--LM--FP-------GNAYGHLHVTQ-----EGTLRIQ   99 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~~~----~~v~W~~~~--~~~--~~--~~-------~~~~~~~~~~~-----~~~l~i~   99 (292)
                      .+..+.+.+|+.++|.|.+.+.+.    ..+.|||..  ...  ..  ..       .....++....     ...|.|.
T Consensus         6 qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   85 (512)
T 1zvo_C            6 ESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLR   85 (512)
T ss_pred             CCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEEC
Confidence            345677889999999999986532    579999852  211  11  00       01123443332     3589999


Q ss_pred             cCCCCCCeEEEEEEEeCCc-----------C--eeEEEEEEEEeecCCCCCeEE-eCCCCceecCCCeEEEEeEeccC-C
Q psy15128        100 GVQKEDAGFFVCSALSVAG-----------S--TTVRAFLQVTSVEDTPPPIVQ-VGPSNQTLPLHSVAFLPCQAVGS-P  164 (292)
Q Consensus       100 ~~~~~d~g~Y~C~~~~~~~-----------~--~~~~~~l~v~~~~~~~~~~~~-~~~~~~~~~~g~~v~l~C~~~~~-p  164 (292)
                      +++.+|+|.|.|.+.+..+           .  ......|.|...... +|.+. ..+.......|+.++|.|.+.+. |
T Consensus        86 ~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~-~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P  164 (512)
T 1zvo_C           86 SMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTK-APDVFPIISGCRHPKDNSPVVLACLITGYHP  164 (512)
T ss_pred             cCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCc-CCeEEeccCCcccccCCCeEEEEEEEEeeec
Confidence            9999999999999987532           0  112344555432112 23332 22221102246899999999887 6


Q ss_pred             CC-ceEEEeCCeeCCCCCccEEEcCCC------cEEEEeeecCCCCC---------------------------------
Q psy15128        165 PP-HIRWYKNGNSLPPEDTRINVSSSG------SLQIDVLRDDFRAE---------------------------------  204 (292)
Q Consensus       165 ~~-~~~W~~~~~~l~~~~~~~~~~~~~------~l~i~~~~~~d~g~---------------------------------  204 (292)
                      .+ .+.|++++..............++      .|.|.....+ .|.                                 
T Consensus       165 ~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~  243 (512)
T 1zvo_C          165 TSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTA  243 (512)
T ss_pred             CceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeC
Confidence            55 899999754321000000000011      1222222211 120                                 


Q ss_pred             -----------------------------------------------------C-------cceEEeCCCceEEEeeCCC
Q psy15128        205 -----------------------------------------------------P-------KDTRVASGETALLECGPPK  224 (292)
Q Consensus       205 -----------------------------------------------------~-------~~~~~~~g~~~~l~C~~~~  224 (292)
                                                                           +       ....+.+|+.++|.|.+..
T Consensus       244 pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v~g  323 (512)
T 1zvo_C          244 QPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVG  323 (512)
T ss_pred             CCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEEEec
Confidence                                                                 0       0011336999999999943


Q ss_pred             CCCC-CeEEEeEcCeEeccC-CCceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128        225 GQPE-PTLHWKKNGQFIDLE-SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       225 ~~p~-~~~~W~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      .+|+ ..|.|+++|+.+... .........++.+.  ....|.|......|.|.|+|.|.|..+..
T Consensus       324 ~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~--~~s~L~i~~~~~~d~g~y~C~a~n~~~~~  387 (512)
T 1zvo_C          324 SDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQS--QHSRLTLPRSLWNAGTSVTCTLNHPSLPP  387 (512)
T ss_pred             eECCCeEEEEEECCEeccCceeccceecCCCCeEE--EEEEEEEchHHhcCCCeEEEEEEeCCCCC
Confidence            3443 499999999886411 11112222333322  23467888888889999999999998754

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.87  E-value=8.4e-21  Score=143.46  Aligned_cols=135  Identities=21%  Similarity=0.355  Sum_probs=93.1

Q ss_pred             CCccEEecCCcEEEEEEEee---eCCCeeEEEECCeEE---eecc----------------------CCCcceeEEee--
Q psy15128         43 PQDQKVGLNGIASFQCVAEG---SPLPSVFWTQEGSQV---LMFP----------------------GNAYGHLHVTQ--   92 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~---~~~~~v~W~~~~~~~---~~~~----------------------~~~~~~~~~~~--   92 (292)
                      +..+.+.+|+.++|.|.+.+   .+.+.+.|++++...   ....                      .....+..+..  
T Consensus         9 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   88 (250)
T 2fbo_J            9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLA   88 (250)
T ss_dssp             CSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTT
T ss_pred             CCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCC
Confidence            34667889999999999987   678899999986421   0110                      00112222221  


Q ss_pred             ecEEEEccCCCCCCeEEEEEEEeCCcCe-----eEEEEEEEEeecCCCCCeEEe-CCCCceecCCCeEEEEeEeccCCCC
Q psy15128         93 EGTLRIQGVQKEDAGFFVCSALSVAGST-----TVRAFLQVTSVEDTPPPIVQV-GPSNQTLPLHSVAFLPCQAVGSPPP  166 (292)
Q Consensus        93 ~~~l~i~~~~~~d~g~Y~C~~~~~~~~~-----~~~~~l~v~~~~~~~~~~~~~-~~~~~~~~~g~~v~l~C~~~~~p~~  166 (292)
                      +..|.|.+++.+|+|.|+|.+.+..+..     ...+.|.|.  ....++.+.. .+....+.+|+.+.|.|.+.+.|.|
T Consensus        89 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~--~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p  166 (250)
T 2fbo_J           89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVT--GHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANA  166 (250)
T ss_dssp             SCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEET--TTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTC
T ss_pred             cceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEe--ccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCC
Confidence            3479999999999999999999876643     234444443  2222333333 3444566789999999999998899


Q ss_pred             ceEEEeCCeeCCC
Q psy15128        167 HIRWYKNGNSLPP  179 (292)
Q Consensus       167 ~~~W~~~~~~l~~  179 (292)
                      .+.|++++..+..
T Consensus       167 ~v~W~k~~~~~~~  179 (250)
T 2fbo_J          167 NVTWYTGPTFFEN  179 (250)
T ss_dssp             EEEEEEEEECSSC
T ss_pred             eeEEEeCCCcccc
Confidence            9999999887754

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.86  E-value=6e-21  Score=140.73  Aligned_cols=138  Identities=20%  Similarity=0.301  Sum_probs=88.8

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEEC--CeEEe--eccC-----CCcceeE---EeeecEEEEccCCCCCCe
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE--GSQVL--MFPG-----NAYGHLH---VTQEGTLRIQGVQKEDAG  107 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~--~~~~~--~~~~-----~~~~~~~---~~~~~~l~i~~~~~~d~g  107 (292)
                      ...+ ...+.+|+.++|.|.+.+.+.+.+.|+|.  +....  ....     ....+..   ......|.|.+++.+|+|
T Consensus         5 ~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   83 (213)
T 3mj8_L            5 TQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEA   83 (213)
T ss_dssp             BCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCE
Confidence            3344 67788999999999999888899999983  21111  1100     0112222   223457999999999999


Q ss_pred             EEEEEEEeCCcC---eeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CC-CceEEEeCCeeCCC
Q psy15128        108 FFVCSALSVAGS---TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PP-PHIRWYKNGNSLPP  179 (292)
Q Consensus       108 ~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~~~W~~~~~~l~~  179 (292)
                      .|+|.+.+..+.   ......|.|... ...+|.+...+....+.+|+.++|.|.+.+. |+ +.+.|+++|.++..
T Consensus        84 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~-~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  159 (213)
T 3mj8_L           84 DYYCQSWDGTNSAWVFGSGTKVTVLGQ-PNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQ  159 (213)
T ss_dssp             EEEEEEEETTTTEEEEBCCEEEEEECS-CCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             EEEEEeccCCcceeEEcCceEEEEeCC-CCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCC
Confidence            999999987762   233345555421 1134555554444445578888888887664 33 37888887776643

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.86  E-value=4.6e-21  Score=141.50  Aligned_cols=163  Identities=13%  Similarity=0.100  Sum_probs=114.6

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeec--EEEEccCCCCCCeEEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG--TLRIQGVQKEDAGFFVCS  112 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~Y~C~  112 (292)
                      .+|.+...+. ..+.+|++++|.|.+.+ +.+.+.|+|++..+.....   .........  .|.|.+++.+|+|.|+|.
T Consensus         8 ~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~---~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   82 (218)
T 1uct_A            8 PMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIG---RRLKFWNETDPEFVIDHMDANKAGRYQCQ   82 (218)
T ss_dssp             CCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECS---EECC----CCCEEEECSCCGGGCEEEEEE
T ss_pred             CCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCccccccc---ccCCCCcceeeEEEEcccccccCEEEEEE
Confidence            4567777666 57889999999999876 6779999998865532110   000112234  899999999999999999


Q ss_pred             EEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCCCcE
Q psy15128        113 ALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSL  192 (292)
Q Consensus       113 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l  192 (292)
                      +.+..+....+..+.+.+....++|.+...+ ...+.+|+.++|.|.+.+.|.+.+.|+|+|..+...  .......+.|
T Consensus        83 a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~--~~~~~~~~~L  159 (218)
T 1uct_A           83 YRIGHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ--HQSGEHPANF  159 (218)
T ss_dssp             EEETTTEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS--EEECSSSEEE
T ss_pred             EEcCCCceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc--ccCCCccCEE
Confidence            9987653333333344333334456666555 456889999999997667777899999999877642  2223345689


Q ss_pred             EEEeeecCCCCCC
Q psy15128        193 QIDVLRDDFRAEP  205 (292)
Q Consensus       193 ~i~~~~~~d~g~~  205 (292)
                      .|.++..+|+|.|
T Consensus       160 ~I~~v~~~D~G~Y  172 (218)
T 1uct_A          160 SLGPVDLNVSGIY  172 (218)
T ss_dssp             ECCSCCGGGCEEE
T ss_pred             EEccCCcccCEEE
Confidence            9999999999854

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.86  E-value=2.7e-19  Score=144.03  Aligned_cols=167  Identities=17%  Similarity=0.258  Sum_probs=117.7

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeecc
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFP   81 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~   81 (292)
                      |.+++++|+|.|+|.+.|..|..... +.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....
T Consensus        67 i~~v~~~D~G~Y~C~a~n~~g~~~~~-~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~  145 (389)
T 2jll_A           67 IKDVKLSDSGRYDCEAASRIGGHQKS-MYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKN  145 (389)
T ss_dssp             EESCCGGGCEEEEEEEECSSCEEEEE-EEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTT
T ss_pred             EcccChhhCEEEEEEEEeCCCCcceE-EEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCccc
Confidence            67899999999999999998887555 99999988887766655578899999999999999999999999998764222


Q ss_pred             CCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEec
Q psy15128         82 GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAV  161 (292)
Q Consensus        82 ~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~  161 (292)
                      ..............|.|.++..+|.|.|+|.+.|..|.......+.+...  ..+|....    .....+..+.|.|...
T Consensus       146 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~--P~~P~~~~----~~~~~~~~~~l~w~~p  219 (389)
T 2jll_A          146 TTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADV--PSSPYGVK----IIELSQTTAKVSFNKP  219 (389)
T ss_dssp             CTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCC--CCCCEEEE----EEEECSSCEEEEEECC
T ss_pred             CceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCC--CCCCcceE----EeeccCCEEEEEEeCC
Confidence            11111111122347999999999999999999999888766655554321  11221110    1122457788998742


Q ss_pred             cC----CCC--ceEEEeCCe
Q psy15128        162 GS----PPP--HIRWYKNGN  175 (292)
Q Consensus       162 ~~----p~~--~~~W~~~~~  175 (292)
                      ..    |..  .+.|.+++.
T Consensus       220 ~~~~g~pi~~y~v~~~~~~~  239 (389)
T 2jll_A          220 DSHGGVPIHHYQVDVKEVAS  239 (389)
T ss_dssp             SCCTTSCEEEEEEEEEETTC
T ss_pred             CCCCCcceEEEEEEEEECCC
Confidence            22    222  467877654

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.86  E-value=1.7e-20  Score=137.15  Aligned_cols=83  Identities=13%  Similarity=0.143  Sum_probs=57.6

Q ss_pred             CCccEEecCCcEEEEEEEeeeCC-----CeeEEEECCeEEeeccCCCcceeEEe------eecEEEEccCCCCCCeEEEE
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSPL-----PSVFWTQEGSQVLMFPGNAYGHLHVT------QEGTLRIQGVQKEDAGFFVC  111 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~~-----~~v~W~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d~g~Y~C  111 (292)
                      +..+.+.+|+++.|.|.+.+.|.     +.+.|++.+.......    .+....      ....|.|.+++.+|+|.|+|
T Consensus         9 ~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~----~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   84 (202)
T 3bp6_B            9 KEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQS----ERATLLEEQLPLGKALFHIPSVQVRDSGQYRC   84 (202)
T ss_dssp             CSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBC----SSCEECGGGGGGTEEEEEECSCCGGGCEEEEE
T ss_pred             CcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccC----CceEEeeccccCCeeEEEECCCCHHHCcEEEE
Confidence            34567889999999999988765     7899999443332111    112211      23589999999999999999


Q ss_pred             EEEeCCcCeeEEEEEEEE
Q psy15128        112 SALSVAGSTTVRAFLQVT  129 (292)
Q Consensus       112 ~~~~~~~~~~~~~~l~v~  129 (292)
                      .+.+..+.......|.|.
T Consensus        85 ~~~~~~~~~~~~~~l~V~  102 (202)
T 3bp6_B           85 LVICGAAWDYKYLTVKVK  102 (202)
T ss_dssp             EEEETTEEEEEEEEEEEE
T ss_pred             EEEeCCCcceEEEEEEec
Confidence            999877655555555443

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.86  E-value=1.9e-21  Score=148.30  Aligned_cols=151  Identities=26%  Similarity=0.333  Sum_probs=111.0

Q ss_pred             CCcCCCee--EEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccC
Q psy15128          5 VKKSDEGK--YQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPG   82 (292)
Q Consensus         5 v~~~D~G~--Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~   82 (292)
                      ++.+|+|.  |+|.+.|..+..... +.|.|...|.....+....+.+|+.+.|.|.+.  |.+.+.|  ++..+.    
T Consensus        66 ~~~~d~g~g~Y~C~a~n~~~~~~~~-~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~----  136 (265)
T 2oz4_A           66 VTAEDEGTQRLTCAVILGNQSQETL-QTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQ----  136 (265)
T ss_dssp             ECGGGCEEEEEEEEEEETTEEEEEE-EEEEEECCCCCEEEESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSS----
T ss_pred             cccccCCcceEEEEEecCCCCcEEE-EEEEEeCCCCceeecCCceecCCCcEEEEEEcc--CCCEEEE--CCEEcc----
Confidence            36788885  999999988776655 889997644333334566788999999999997  8889999  665441    


Q ss_pred             CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCC-cCee---EEEEEEEEeecCCCCCeEEe--CCCCceecCCCeEEE
Q psy15128         83 NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA-GSTT---VRAFLQVTSVEDTPPPIVQV--GPSNQTLPLHSVAFL  156 (292)
Q Consensus        83 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~-~~~~---~~~~l~v~~~~~~~~~~~~~--~~~~~~~~~g~~v~l  156 (292)
                       .     ....+.|.|..+..+|.|.|+|.+.|.. |...   ....|.|..     +|.+..  .+....+.+|+.+.|
T Consensus       137 -~-----~~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~-----~p~~~~~~~p~~~~v~~g~~~~l  205 (265)
T 2oz4_A          137 -P-----LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY-----GPRLDERDCPGNWTWPENSQQTP  205 (265)
T ss_dssp             -C-----CSSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEE-----EEECCGGGSCSEEEEETTCEECC
T ss_pred             -C-----CCCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEe-----CCccccccCCCccEEcCCCeEEE
Confidence             0     0123468899999999999999998544 5543   445555543     222222  234556889999999


Q ss_pred             EeEeccCCCCceEEEeCCe
Q psy15128        157 PCQAVGSPPPHIRWYKNGN  175 (292)
Q Consensus       157 ~C~~~~~p~~~~~W~~~~~  175 (292)
                      .|.+.+.|.|.+.|++++.
T Consensus       206 ~C~~~g~P~p~i~W~~~~~  224 (265)
T 2oz4_A          206 MCQAWGNPLPELKCLKDGT  224 (265)
T ss_dssp             CCCCEEESCCEEEEEETTT
T ss_pred             EeECccCCCCeEEEEECCc
Confidence            9999999999999999987

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.85  E-value=1.3e-21  Score=142.41  Aligned_cols=162  Identities=14%  Similarity=0.115  Sum_probs=101.2

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      .+|.+...+. ..+.+|++++|.|.+.+.|. .+.|+|++..+.....   ........+.|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~---~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   78 (196)
T 2d3v_A            4 SKATLWAEPG-SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQ---NPLEPKNKARFSIPSMTEHHAGRYRCYYY   78 (196)
T ss_dssp             CBCEEEEESC-SEEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEE---CCCSSTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEeCCC-CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccc---cccCCccccEEEeccCChhHCeEEEEEEe
Confidence            4566666665 47889999999999987655 9999999875421100   00112235689999999999999999999


Q ss_pred             eCCcCee--EEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcC----
Q psy15128        115 SVAGSTT--VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSS----  188 (292)
Q Consensus       115 ~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~----  188 (292)
                      |..+...  ..+.|.|.  ...++|.+...+ ...+.+|+.++|.|.+.+.| +.+.|+|++..+...........    
T Consensus        79 n~~g~~~~s~~~~l~V~--~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~  154 (196)
T 2d3v_A           79 SPAGWSEPSDPLELVVT--GFYNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQF  154 (196)
T ss_dssp             ETTEECBCCCCEEEEEE--CSSCCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCE
T ss_pred             CCCCcCCcCccEEEEec--CCCCCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCc
Confidence            8765332  23444443  323355555443 34688999999999999887 89999999987753211111111    


Q ss_pred             CCcEEEEeeecCCCCCC
Q psy15128        189 SGSLQIDVLRDDFRAEP  205 (292)
Q Consensus       189 ~~~l~i~~~~~~d~g~~  205 (292)
                      .+.|.|.++..+|+|.|
T Consensus       155 ~~~L~I~~v~~~D~G~Y  171 (196)
T 2d3v_A          155 QALFPVGPVTPSHRWML  171 (196)
T ss_dssp             EEEEECCCCBTTBCEEE
T ss_pred             eeEEEeeecCcccCeeE
Confidence            25789999998888843

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.85  E-value=1.7e-21  Score=140.38  Aligned_cols=169  Identities=14%  Similarity=0.180  Sum_probs=105.8

Q ss_pred             EEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEcc-CCCCCCeEEEEEEEeCCcCeeEEEE
Q psy15128         47 KVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQG-VQKEDAGFFVCSALSVAGSTTVRAF  125 (292)
Q Consensus        47 ~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~Y~C~~~~~~~~~~~~~~  125 (292)
                      ...+|+.+.|.|.+.+ +. .+.|+|++..+...           .+..|.|.+ ++.+|+|.|+|.+.|..+.......
T Consensus        10 v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~-----------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~   76 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-DE-NLKWEKNGQELPQK-----------HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLK   76 (186)
T ss_dssp             EEEETTEEEEECSSCC-CT-TCEEEETTEEECSC-----------CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEEC
T ss_pred             EEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCC-----------CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEE
Confidence            3467999999999977 43 59999999877421           245799999 9999999999999988776443333


Q ss_pred             EEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCCCC
Q psy15128        126 LQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEP  205 (292)
Q Consensus       126 l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g~~  205 (292)
                      +.+...  .++       .....   .    .........+.+.-    . ...        ..             -..
T Consensus        77 ~~v~~~--~~~-------~~~~~---~----~~~~~~~~~~~~~~----~-~~~--------~~-------------~~~  114 (186)
T 1jbj_A           77 ARVGSA--DDA-------KKDAA---K----KDDAKKDDAKKDGS----Q-TNK--------AK-------------NLV  114 (186)
T ss_dssp             CCCCSC--CCC-------CCCCC---C----CCCCSCCSSSTTCC----S-CCC--------CS-------------SCC
T ss_pred             EEEecc--ccc-------ccccc---c----ccccccCCcccccc----c-ccc--------cc-------------ccc
Confidence            332210  000       00000   0    00000000000000    0 000        00             000


Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      ....+.+|+.+.|.|.+    |.|.|.|+|+|+.+.....              ....|.|..+..+|+|.|+|.|.|..
T Consensus       115 ~~~~~~~G~~v~l~C~~----p~p~i~W~k~g~~i~~~~~--------------~~~~L~i~~v~~~D~G~Y~C~a~N~~  176 (186)
T 1jbj_A          115 QVDGSRGDGSVLLTCGL----TDKTIKWLKDGSIISPLNA--------------TKNTWNLGNNAKDPRGTYQCQGAKET  176 (186)
T ss_dssp             EECCCSSSCEEEEECSS----SCSCEEEEETTEECCCSSC--------------CSSCCEEEETTSCCEEEEEEEESSCE
T ss_pred             cceecCCCCeEEEEeeC----CCCeEEEEECCEECcccCC--------------CcceEEECCCCcCcCEEEEEEEEcCc
Confidence            01234589999999986    7889999999998852111              22368889999999999999999999


Q ss_pred             ccc
Q psy15128        286 NQQ  288 (292)
Q Consensus       286 g~~  288 (292)
                      |+.
T Consensus       177 g~~  179 (186)
T 1jbj_A          177 SNP  179 (186)
T ss_dssp             EEE
T ss_pred             CCc
Confidence            965

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.85  E-value=2.4e-20  Score=136.09  Aligned_cols=118  Identities=16%  Similarity=0.240  Sum_probs=74.4

Q ss_pred             EecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCccee-EEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEE
Q psy15128         48 VGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHL-HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL  126 (292)
Q Consensus        48 ~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l  126 (292)
                      +.+|+.++|.|.+.|.|.+.+.|++.....      ..... .......|.|.+++.+|+|.|+|.+.|..+.....+.|
T Consensus        13 ~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l   86 (202)
T 1vca_A           13 AQIGDSVSLTCSTTGCESPFFSWRTQIDSP------LNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV   86 (202)
T ss_dssp             EETTSCEEEEEEEESCSSCEEEEEETTCCC------CSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred             EcCCCcEEEEEeecCCCCCeEEEECCCCCC------ccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEE
Confidence            448999999999999999999999843210      00111 11224479999999999999999999987655555555


Q ss_pred             EEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CC--CceEEEeCCee
Q psy15128        127 QVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PP--PHIRWYKNGNS  176 (292)
Q Consensus       127 ~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~--~~~~W~~~~~~  176 (292)
                      .|...  ...+.+.  +. ..+.+|+.++|.|.+.+. |.  +.+.|++++..
T Consensus        87 ~V~~~--p~~~~~~--~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~  134 (202)
T 1vca_A           87 EIYSF--PKDPEIH--LS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHL  134 (202)
T ss_dssp             EEEBC--CSCCEEE--ES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEE
T ss_pred             EEEeC--CCCCEeC--Cc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeE
Confidence            55421  1111222  12 345566666666666554 22  24566666543

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.85  E-value=5.3e-21  Score=139.96  Aligned_cols=161  Identities=16%  Similarity=0.197  Sum_probs=111.3

Q ss_pred             ccEEecCCcEEEEEEEee-eCCCeeEEEECCeEEeeccCCCcceeEEe---eecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         45 DQKVGLNGIASFQCVAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      ...+.+|+.+.|.|.+.+ .|.+.+.|++++..+..  +..+ .....   ....|.|.+++.+|+|.|+|.+.|  +..
T Consensus        11 ~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~--~~~~-~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a   85 (207)
T 3rbs_A           11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFE--GPKY-KMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKA   85 (207)
T ss_dssp             EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECS--SSSC-EEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TTE
T ss_pred             ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECcc--CCCE-EEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CCe
Confidence            567889999999999864 68999999999998742  1111 11111   123699999999999999999998  444


Q ss_pred             eEEEEEEEEeec----------------CCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCCceEEEeCCeeCCCCCcc
Q psy15128        121 TVRAFLQVTSVE----------------DTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPPHIRWYKNGNSLPPEDTR  183 (292)
Q Consensus       121 ~~~~~l~v~~~~----------------~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~~~W~~~~~~l~~~~~~  183 (292)
                      .....+.+....                ...+|.+...+ ...+.+|+.+.|.|.+.+. |.|.+.|+|++.++.... +
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~-~  163 (207)
T 3rbs_A           86 TNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE-K  163 (207)
T ss_dssp             EEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCC-C
T ss_pred             EEEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCC-c
Confidence            433333221000                00134444333 3668899999999999998 899999999999987643 2


Q ss_pred             EEEcC-CCcEEEEeeecCCCCCCcceEEeC
Q psy15128        184 INVSS-SGSLQIDVLRDDFRAEPKDTRVAS  212 (292)
Q Consensus       184 ~~~~~-~~~l~i~~~~~~d~g~~~~~~~~~  212 (292)
                      +.... ..+|.|.++..+|+|.|.......
T Consensus       164 ~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  193 (207)
T 3rbs_A          164 HDFKDGICTLLITEFSKKDAGIYEVILKDD  193 (207)
T ss_dssp             CCCSSEEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             eEcCCCEEEEEECCCCcccCEEEEEEEEcC
Confidence            22111 236999999999999776554433

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.85  E-value=7.8e-20  Score=131.58  Aligned_cols=160  Identities=18%  Similarity=0.250  Sum_probs=104.5

Q ss_pred             cEEecCCcEEEEEEEeeeCCC--eeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEE
Q psy15128         46 QKVGLNGIASFQCVAEGSPLP--SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  123 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~  123 (292)
                      ..+.+|+.++|.|.+.+.|.+  .+.|++++..+......       .....|.|.  +.+|+|.|+|.+.+..   ...
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~-------~~~~~l~i~--~~~d~G~Y~C~~~n~~---~~~   75 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-------GQKTEFKVD--SDDQWGEYSCVFLPEP---MGT   75 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-------CSEEEEEEC--GGGCCEEEEEEEESTT---SCE
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc-------CCcEEEEEe--chhhCeEEEEEEECCc---CcE
Confidence            457789999999999887766  89999999876422111       113356666  6899999999998721   122


Q ss_pred             EEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCC
Q psy15128        124 AFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRA  203 (292)
Q Consensus       124 ~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g  203 (292)
                      ..|.|..     +|.+...                                                             
T Consensus        76 ~~l~V~~-----~P~~~~~-------------------------------------------------------------   89 (184)
T 3b5h_A           76 ANIQLHG-----PPRVKAV-------------------------------------------------------------   89 (184)
T ss_dssp             EEEEECC-----SCCCEES-------------------------------------------------------------
T ss_pred             EEEEEec-----CCceeec-------------------------------------------------------------
Confidence            3333310     0000000                                                             


Q ss_pred             CCcceEEeCCCceEEEeeCCCCCC-CCeEEEeE---cCeE-eccCCCceEEecCCCcccccccccccccccc-cccccee
Q psy15128        204 EPKDTRVASGETALLECGPPKGQP-EPTLHWKK---NGQF-IDLESSKRVSILGDPWFDSRRSRSIFGSVLG-ALSDDQW  277 (292)
Q Consensus       204 ~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~---~g~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y  277 (292)
                       +....+.+|+.+.|.|.+ .+.| .+.+.|++   ++.. +......++.+..++     ....|.|..+. ..|+|.|
T Consensus        90 -~~~~~~~~g~~~~l~C~~-~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~~d~G~Y  162 (184)
T 3b5h_A           90 -KSSEHINEGETAMLVCKS-ESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ-----GRSELHIENLNMEADPGQY  162 (184)
T ss_dssp             -CSEEEECTTSCEEEEEEC-CCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEET-----TEEEEEECSCCTTTSSEEE
T ss_pred             -CCCcEEcCCCcEEEEEEE-CCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecC-----CeeEEEEeeccccccCceE
Confidence             012345678889999987 7777 78899998   4443 322222444443221     12368899999 8999999


Q ss_pred             EEEEeeccccccc
Q psy15128        278 KLIAKNIRNQQQH  290 (292)
Q Consensus       278 ~C~a~n~~g~~~~  290 (292)
                      +|.|.|..|....
T Consensus       163 ~C~a~N~~g~~~~  175 (184)
T 3b5h_A          163 RCNGTSSKGSDQA  175 (184)
T ss_dssp             EEEEEETTEEEEE
T ss_pred             EEEEEeCCCcceE
Confidence            9999999998764

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.84  E-value=1.4e-20  Score=135.48  Aligned_cols=151  Identities=17%  Similarity=0.172  Sum_probs=109.6

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      .+|.+...+.. .+.+|++++|.|.+.+ +.+.+.|+|++..            .....+.|.|.+++.+|+|.|+|.+.
T Consensus         7 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~------------~~~~~~~L~i~~v~~~D~G~Y~C~a~   72 (184)
T 2gi7_A            7 PKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSS------------RYQDQAVLFIPAMKRSLAGRYRCSYQ   72 (184)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTC------------CEESSSEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcc------------ccCcccEEEECcCChhhCceEEEEEE
Confidence            45666666654 7899999999999877 7789999998764            12345689999999999999999999


Q ss_pred             eCCcCee--EEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCCCcE
Q psy15128        115 SVAGSTT--VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSL  192 (292)
Q Consensus       115 ~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l  192 (292)
                      |..+...  ....|.|  ....++|.+...+ ...+.+|+.++|.|.+.+. ++.+.|+|++..+.....  .....+.|
T Consensus        73 n~~g~~~~s~~~~l~V--~~~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~-~~~~~w~k~g~~~~~~~~--~~~~~~~L  146 (184)
T 2gi7_A           73 NGSLWSLPSDQLELVA--TGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYG-FDQFALYKEGDPAPYKNP--ERWYRASF  146 (184)
T ss_dssp             ETTEEBCCCCCEEEEE--ESSSCCCEEEEEC-CCSSCCTTCEEEEEECSSC-CCEEEEEECCCCTTSCCC--CEEEEESS
T ss_pred             cCCCccCCCCCEEEEe--cCcCCCCEEEeCC-CceecCCCcEEEEEEcCCC-CcEEEEEECCCcCcceec--CCCceEEE
Confidence            8765322  2344444  3333455565555 4457799999999998665 468999999988765221  12234578


Q ss_pred             EEEeeecCCCCCC
Q psy15128        193 QIDVLRDDFRAEP  205 (292)
Q Consensus       193 ~i~~~~~~d~g~~  205 (292)
                      .|.++..+|+|.|
T Consensus       147 ~i~~v~~~D~G~Y  159 (184)
T 2gi7_A          147 PIITVTAAHSGTY  159 (184)
T ss_dssp             SEEEETTCCSEEE
T ss_pred             EEccCCccCCeEE
Confidence            8999998888843

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.84  E-value=2.5e-20  Score=134.61  Aligned_cols=159  Identities=15%  Similarity=0.066  Sum_probs=110.4

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      +|.+...+.. .+.+|++++|.|.+.+ +.+.+.|+|++..+......   .........|.|.+++.+|+|.|+|.+.+
T Consensus         4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~---~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   78 (188)
T 1oll_A            4 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPK---PPERINKVKFYIPDMNSRMAGQYSCIYRV   78 (188)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCS---SCTTCCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccc---cCCCcceeEEEeCcCCcccCeEEEEEecC
Confidence            4666666655 7899999999999865 45689999999876422111   01122356899999999999999999987


Q ss_pred             CCcCe--eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCCCcEE
Q psy15128        116 VAGST--TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQ  193 (292)
Q Consensus       116 ~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~  193 (292)
                      ..+..  .....|.|.  ...++|.+...+ ...+.+|+.++|.|.+.+. .+.+.|+|+|..+..  ........+.|.
T Consensus        79 ~~~~~~~s~~~~l~V~--~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~--~~~~~~~~~~L~  152 (188)
T 1oll_A           79 GELWSEPSNLLDLVVT--EMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV--QRGYGKVQAEFP  152 (188)
T ss_dssp             TTEECCCCCCEEEEEE--SCSCCCEEEEES-CSEEETTCEEEEEEECSSS-CSEEEEEEESSSCEE--EEEECSSEEEEE
T ss_pred             CCCCCCCCCceEEEec--ccCCCCeEEECC-CCccccCCEEEEEEEcCCC-CCEEEEEECCccccc--cccCCCceeEEE
Confidence            64432  223444443  223455665544 3568899999999998654 568999999876643  111223345899


Q ss_pred             EEeeecCCCCCC
Q psy15128        194 IDVLRDDFRAEP  205 (292)
Q Consensus       194 i~~~~~~d~g~~  205 (292)
                      |.+++.+|+|.|
T Consensus       153 I~~v~~~d~G~Y  164 (188)
T 1oll_A          153 LGPVTTAHRGTY  164 (188)
T ss_dssp             EEECCGGGCEEE
T ss_pred             ECCCCcCCCcEE
Confidence            999999998844

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.84  E-value=4.9e-21  Score=145.12  Aligned_cols=177  Identities=14%  Similarity=0.142  Sum_probs=100.2

Q ss_pred             CCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCC-----CCceEEEeCC-
Q psy15128        101 VQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSP-----PPHIRWYKNG-  174 (292)
Q Consensus       101 ~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p-----~~~~~W~~~~-  174 (292)
                      ++.+|+|.|+|.|.   |.......+.+.     .++.+...+....+.+|+.++|.|.+.+.|     .+.+.|++++ 
T Consensus        11 v~~~dsg~Y~C~a~---g~~~~~~~~~~~-----~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~   82 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYSFTNYWMNWL-----RELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRP   82 (254)
T ss_dssp             -----------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECT
T ss_pred             ecCCccEEEEEcCc---hhhhhhhhhhee-----eceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCC
Confidence            67899999999998   322222222221     144555556778899999999999998887     3789999843 


Q ss_pred             -eeC-----------CCCCccEEEcCC---CcEEEEeeecCCCCCC--------------------------cceEEe--
Q psy15128        175 -NSL-----------PPEDTRINVSSS---GSLQIDVLRDDFRAEP--------------------------KDTRVA--  211 (292)
Q Consensus       175 -~~l-----------~~~~~~~~~~~~---~~l~i~~~~~~d~g~~--------------------------~~~~~~--  211 (292)
                       ..+           .....++.....   .+|.|.++..+|+|.|                          +...+.  
T Consensus        83 g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~  162 (254)
T 2c1o_A           83 GQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPP  162 (254)
T ss_dssp             TSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECC
T ss_pred             CCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecC
Confidence             222           111134433322   2799999999999922                          222221  


Q ss_pred             -----CCCceEEEeeCCCC-CCC-CeEEEeEcCeEeccCCCceEEe--cCCCccccccccccccccccccccceeEEEEe
Q psy15128        212 -----SGETALLECGPPKG-QPE-PTLHWKKNGQFIDLESSKRVSI--LGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK  282 (292)
Q Consensus       212 -----~g~~~~l~C~~~~~-~p~-~~~~W~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~  282 (292)
                           .|+.++|.|.+ .+ .|+ +.+.|+++|+++..........  ..++.+.  ....|.|..+..+|+|.|+|.|.
T Consensus       163 ~~~~~~g~~v~l~C~~-~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~--~~~~L~i~~~~~~d~G~Y~C~a~  239 (254)
T 2c1o_A          163 SSEQLTSGGASVVCFL-NNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYS--MSSTLTLTKDEYERHNSYTCEAT  239 (254)
T ss_dssp             CHHHHHTTEEEEEEEE-EEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEE--EEEEEEEEHHHHHTCCEEEEEEE
T ss_pred             ChhhccCCcEEEEEEE-ecccCCCcEEEEEECCCcccCcceeccccccCCCCcEE--EEEEEEeccccccCCCeEEEEEE
Confidence                 37799999998 55 554 4799999999885320111111  1222221  23468899999999999999999


Q ss_pred             eccccc
Q psy15128        283 NIRNQQ  288 (292)
Q Consensus       283 n~~g~~  288 (292)
                      |.....
T Consensus       240 n~~~~~  245 (254)
T 2c1o_A          240 HKTSTS  245 (254)
T ss_dssp             CTTCSS
T ss_pred             cCCCCC
Confidence            987753

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.84  E-value=4e-20  Score=136.25  Aligned_cols=128  Identities=14%  Similarity=0.100  Sum_probs=85.1

Q ss_pred             CCCccEEecC--CcEEEEEEEeeeCCCeeEEEEC--CeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         42 RPQDQKVGLN--GIASFQCVAEGSPLPSVFWTQE--GSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        42 ~~~~~~~~~g--~~~~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      .+..+.+.+|  +.++|.|.+.+ |.+.+.|++.  +.... ..+   ..........|.|.+++.+|+|.|+|.+.+..
T Consensus        13 ~p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~-~~~---~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~   87 (213)
T 2x1w_L           13 QHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFV-PDG---NRISWDSKKGFTIPSYMISYAGMVFCEAKIND   87 (213)
T ss_dssp             -CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEEC-CCS---SSCEEETTTEEEEEGGGTTTCSEEEEEEC---
T ss_pred             CceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccc-cCC---CcccccCCccEEEccCChhcCceEEEEEEECC
Confidence            3456778899  99999999976 7789999885  33322 111   22333445689999999999999999998843


Q ss_pred             cCeeEE-EEEEEEeecCCCCCeEEeCC-CCceecCCCeEEEEeEeccCCC--CceEEEeCCeeC
Q psy15128        118 GSTTVR-AFLQVTSVEDTPPPIVQVGP-SNQTLPLHSVAFLPCQAVGSPP--PHIRWYKNGNSL  177 (292)
Q Consensus       118 ~~~~~~-~~l~v~~~~~~~~~~~~~~~-~~~~~~~g~~v~l~C~~~~~p~--~~~~W~~~~~~l  177 (292)
                      +..... ..|.+.  . ..++.+...+ ....+.+|+.++|.|.+.+.|.  +.+.|++++..+
T Consensus        88 ~~~~s~~~~l~v~--~-~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~  148 (213)
T 2x1w_L           88 ESYQSIMYIVVVV--G-YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKH  148 (213)
T ss_dssp             -CEECCCEEEEEC--B-CCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSC
T ss_pred             eeEEEEEEEEEEe--C-CcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCcc
Confidence            332211 334432  2 2233344433 4447899999999999987643  479999987654

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.84  E-value=1.2e-19  Score=135.50  Aligned_cols=137  Identities=22%  Similarity=0.345  Sum_probs=99.0

Q ss_pred             CCCccEEecCCcEEEEEEEeeeCC-CeeEEEECCeEEe---ec----cCC-CcceeE----------EeeecEEEEccCC
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGSPL-PSVFWTQEGSQVL---MF----PGN-AYGHLH----------VTQEGTLRIQGVQ  102 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~---~~----~~~-~~~~~~----------~~~~~~l~i~~~~  102 (292)
                      .+....+.+|+.+.|.|.+.+.+. +.+.|++++....   ..    ... ...+..          ...++.|.|.+++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~   85 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQ   85 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCC
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccC
Confidence            455678899999999999988874 7999998653310   00    000 011122          3344569999999


Q ss_pred             CCCCeEEEEEEEeCC-cCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeE-EEEeEe-ccCCCCceEEEeCCeeCCC
Q psy15128        103 KEDAGFFVCSALSVA-GSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVA-FLPCQA-VGSPPPHIRWYKNGNSLPP  179 (292)
Q Consensus       103 ~~d~g~Y~C~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v-~l~C~~-~~~p~~~~~W~~~~~~l~~  179 (292)
                      .+|+|.|+|.+.+.. +.......|.|..  ....+.+...+....+.+|+.+ .|.|.+ .+.|.|.+.|++++.++..
T Consensus        86 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~--~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~  163 (231)
T 2pet_A           86 VGDERDYVCVVRAGAAGTAEATARLNVFA--KPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEV  163 (231)
T ss_dssp             GGGCEEEEEEEECGGGCEEEEEEEEEEEB--CCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCC
T ss_pred             cccCceEEEEEEecCCCceEEEEEEEEEe--cCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCcc
Confidence            999999999999876 5555555565543  2334666666666677799988 999999 8899999999999988865


Q ss_pred             C
Q psy15128        180 E  180 (292)
Q Consensus       180 ~  180 (292)
                      .
T Consensus       164 ~  164 (231)
T 2pet_A          164 P  164 (231)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.84  E-value=2.2e-20  Score=134.52  Aligned_cols=153  Identities=12%  Similarity=0.144  Sum_probs=102.1

Q ss_pred             ccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeecc---------CCCcceeEEee------ecEEEEccCCCCCCeEE
Q psy15128         45 DQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFP---------GNAYGHLHVTQ------EGTLRIQGVQKEDAGFF  109 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~---------~~~~~~~~~~~------~~~l~i~~~~~~d~g~Y  109 (292)
                      .+.+.+|++++|.|.+.+.|.+.+.|++++.......         .....+.....      ...|.|.+++.+|+|.|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            3567899999999999888888999999886322110         01112222221      33599999999999999


Q ss_pred             EEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCC
Q psy15128        110 VCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS  189 (292)
Q Consensus       110 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~  189 (292)
                      +|.+.+..+    .+.+.|..        +.                                    .            
T Consensus        84 ~C~~~~~~~----~~~l~V~~--------~~------------------------------------~------------  103 (184)
T 2ny1_B           84 ICEVEDQKE----EVQLLVFG--------LT------------------------------------A------------  103 (184)
T ss_dssp             EEEETTEEE----EEEEEEEE--------EE------------------------------------E------------
T ss_pred             EEEEEcCCC----cEEEEEEE--------ec------------------------------------C------------
Confidence            999976532    22222210        00                                    0            


Q ss_pred             CcEEEEeeecCCCCCCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccc
Q psy15128        190 GSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVL  269 (292)
Q Consensus       190 ~~l~i~~~~~~d~g~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  269 (292)
                                     +....+.+|+.++|.|.+ .+.|.+.+.|+++|..+.        .         ....|.|..+
T Consensus       104 ---------------~~~~~v~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~--------~---------~~~~L~i~~v  150 (184)
T 2ny1_B          104 ---------------NSDTHLLQGQSLTLTLES-PPGSSPSVQCRSPRGKNI--------Q---------GGKTLSVSQL  150 (184)
T ss_dssp             ---------------SSCSEEETTCCEEEEEEC-CTTCCCEEEEECTTSCEE--------E---------ESSEEEESSC
T ss_pred             ---------------CCCceeecCCCEEEEEEc-CCCCCCEEEEEeCCCccc--------c---------CceEEEEecC
Confidence                           011235667788888887 566777888887765431        1         1125888899


Q ss_pred             cccccceeEEEEeeccccccc
Q psy15128        270 GALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       270 ~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      ..+|+|.|+|.|.|..|..+.
T Consensus       151 ~~~d~G~Y~C~a~n~~~~~~~  171 (184)
T 2ny1_B          151 ELQDSGTWTCTVLQNQKKVEF  171 (184)
T ss_dssp             CGGGCEEEEEEEEETTEEEEE
T ss_pred             CcCCCeEEEEEEEECCceEEE
Confidence            999999999999999887654

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.84  E-value=8.7e-20  Score=135.77  Aligned_cols=77  Identities=14%  Similarity=0.193  Sum_probs=51.6

Q ss_pred             ccEEecCCcEEEEEEEeeeCCC---eeEEEECCeEEee-----------ccCCC-cceeEE------eeecEEEEccCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSPLP---SVFWTQEGSQVLM-----------FPGNA-YGHLHV------TQEGTLRIQGVQK  103 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~~---~v~W~~~~~~~~~-----------~~~~~-~~~~~~------~~~~~l~i~~~~~  103 (292)
                      ++.+.+|++++|.|.+.+.+.+   .|.|+|++.....           ..... ..+...      ..+..|.|.+++.
T Consensus        13 pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~   92 (226)
T 4f80_A           13 PILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTA   92 (226)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCch
Confidence            4678899999999999765443   6999997642210           00011 111111      1234799999999


Q ss_pred             CCCeEEEEEEEeCCcCee
Q psy15128        104 EDAGFFVCSALSVAGSTT  121 (292)
Q Consensus       104 ~d~g~Y~C~~~~~~~~~~  121 (292)
                      +|+|.|+|.+.|..+...
T Consensus        93 ~D~G~Y~C~a~n~~~~~~  110 (226)
T 4f80_A           93 SDSGKYLCYFQDGDFYEK  110 (226)
T ss_dssp             GGCEEEEEEEEETTEEEE
T ss_pred             HHCeeEEEEEECCCcEEE
Confidence            999999999998765443

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.84  E-value=3.9e-21  Score=139.94  Aligned_cols=119  Identities=17%  Similarity=0.213  Sum_probs=91.2

Q ss_pred             CcccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeec
Q psy15128          1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMF   80 (292)
Q Consensus         1 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~   80 (292)
                      .|.+++.+|+|.|+|.+.|..+..... +.|.|..||.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...
T Consensus        72 ~I~~v~~~D~G~Y~C~a~n~~g~~~~~-~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~  150 (203)
T 4fa8_A           72 VVTAANISHDGNYLCRMKLGETEVTKQ-EHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAP  150 (203)
T ss_dssp             EESSCCGGGCEEEEEEEEETTEEEEEE-EEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC-------
T ss_pred             EEccCCHHHCeEEEEEEEcCCCcEEEE-EEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCc
Confidence            378999999999999999988887766 8999998888888777788889999999999999999999999876544321


Q ss_pred             cCCCcceeEEeeecE---EEEccCCCCCCeEEEEEEEeCCcCee
Q psy15128         81 PGNAYGHLHVTQEGT---LRIQGVQKEDAGFFVCSALSVAGSTT  121 (292)
Q Consensus        81 ~~~~~~~~~~~~~~~---l~i~~~~~~d~g~Y~C~~~~~~~~~~  121 (292)
                       .....+.....++.   |.|.++..+|+|.|+|.|.|..|...
T Consensus       151 -~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~  193 (203)
T 4fa8_A          151 -TAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAH  193 (203)
T ss_dssp             ------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEE
T ss_pred             -ccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEE
Confidence             11222333444444   45568999999999999999988755

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.84  E-value=4.7e-22  Score=156.06  Aligned_cols=199  Identities=13%  Similarity=0.146  Sum_probs=116.5

Q ss_pred             cCCcCCCeeEEEEEEecccccccccEEEE---EeCCCcE-EeCCCccEEecCCcEEEEEEEeee-CCC---eeEEEECCe
Q psy15128          4 EVKKSDEGKYQCYVQNMVGERETKPALLT---VHAPPSF-VVRPQDQKVGLNGIASFQCVAEGS-PLP---SVFWTQEGS   75 (292)
Q Consensus         4 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~---v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~-~~~---~v~W~~~~~   75 (292)
                      ++..+|+|.|+|.+.|..+..... +.+.   +...|.+ ...+....+.+|+.++|.|.+.+. |.+   .+.|++++.
T Consensus        78 ~~~~~d~g~Y~C~a~n~~~~~~~~-~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g  156 (323)
T 2wqr_A           78 QKHWLSDRTYTCQVTYQGHTFEDS-TKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASG  156 (323)
T ss_dssp             HHHHHTTCCEEEEEEETTEEEEEE-ECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTC
T ss_pred             HHHcCCCCcEEEEEEeCCCCccee-eecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCC
Confidence            344559999999999876543222 2110   1112333 334444567789999999999886 455   899999753


Q ss_pred             EEeeccCCC---cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEee-cCCCCCeEEeCCCCceecCC
Q psy15128         76 QVLMFPGNA---YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSV-EDTPPPIVQVGPSNQTLPLH  151 (292)
Q Consensus        76 ~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~-~~~~~~~~~~~~~~~~~~~g  151 (292)
                      .........   .....+...+.|.|.++..+|+|.|+|.+.|..+....  .+.+... ....+|.+.+.+.......|
T Consensus       157 ~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~--~~~v~~~~~~~~~P~v~~~~~~~~~~~g  234 (323)
T 2wqr_A          157 KPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRAL--MRSTTKTSGPRAAPEVYAFATPEWPGSR  234 (323)
T ss_dssp             CCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCE--EEEECCCCSCCBCCEEEEEECCCCTTCT
T ss_pred             cccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCe--eeEEEccCCCCCCCEEEEeCCChHHhcC
Confidence            322110000   00011224557999999999999999999987643322  2333211 11224444332222222349


Q ss_pred             CeEEEEeEeccC-CCC-ceEEEeCCeeCCCCCcc---EEEcCCC------cEEEEeeecCCCCCC
Q psy15128        152 SVAFLPCQAVGS-PPP-HIRWYKNGNSLPPEDTR---INVSSSG------SLQIDVLRDDFRAEP  205 (292)
Q Consensus       152 ~~v~l~C~~~~~-p~~-~~~W~~~~~~l~~~~~~---~~~~~~~------~l~i~~~~~~d~g~~  205 (292)
                      +.++|.|.+.+. |.+ .+.|+++|.++......   .....++      .|.|..+..+|.|.|
T Consensus       235 ~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y  299 (323)
T 2wqr_A          235 DKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEF  299 (323)
T ss_dssp             TEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCE
T ss_pred             CcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEE
Confidence            999999999874 433 79999999988653110   1112222      466666666666643

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.83  E-value=2.5e-19  Score=129.63  Aligned_cols=124  Identities=24%  Similarity=0.437  Sum_probs=100.2

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEE--CCeEEee
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQ--EGSQVLM   79 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~--~~~~~~~   79 (292)
                      |.+++.+|+|.|+|.+.+. +..... +.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++  ++..+..
T Consensus        60 i~~~~~~d~G~Y~C~~~n~-~~~~~~-~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~  137 (190)
T 2wv3_A           60 INKPRAEDSGEYHCVYHFV-SAPKAN-ATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEI  137 (190)
T ss_dssp             ESSCCGGGCEEEEEEEEET-TEEEEE-EEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEEC
T ss_pred             EecCCcccCEEEEEEEEeC-Cccccc-EEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeee
Confidence            6789999999999999998 555555 89999999998888888889999999999999999999999999  6665432


Q ss_pred             ccCCCcceeEEee---ecEEEEccCC-CCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128         80 FPGNAYGHLHVTQ---EGTLRIQGVQ-KEDAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus        80 ~~~~~~~~~~~~~---~~~l~i~~~~-~~d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      ..  ...+.....   .+.|.|.+++ .+|.|.|+|.+.|..|.......|.|.
T Consensus       138 ~~--~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          138 SN--SSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             CC--TTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             ec--CCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            21  122222222   2379999999 699999999999999888777777664

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.83  E-value=1.1e-20  Score=137.67  Aligned_cols=162  Identities=14%  Similarity=0.137  Sum_probs=107.3

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      .+|.+...+. ..+.+|+.++|.|.+.+.|. .+.|+|++..+.....   ..........|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~---~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   78 (198)
T 1ugn_A            4 PKPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITR---IPQELVKKGQFPIPSITWEHTGRYRCYYG   78 (198)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHT---SCHHHHTTTEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCcccccccc---ccccCCcccEEEECCCCHHHCeEEEEEEE
Confidence            3566666665 47889999999999987665 7999999876531111   01112235689999999999999999999


Q ss_pred             eCC-cC--eeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcC---
Q psy15128        115 SVA-GS--TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSS---  188 (292)
Q Consensus       115 ~~~-~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~---  188 (292)
                      |.. +.  ....+.|.|.  ...+.|.+...+ ...+.+|+.++|.|.+.+. .+.+.|+|++..+...........   
T Consensus        79 n~~~g~~~~s~~~~l~V~--~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~  154 (198)
T 1ugn_A           79 SDTAGRSESSDPLELVVT--GAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGS  154 (198)
T ss_dssp             ETTTEECCCCCCEEEEEE--CSSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------C
T ss_pred             CCCCCcccCCccEEEEEc--ccccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCc
Confidence            876 42  2333445444  223345555443 3568899999999999888 789999999987754322211111   


Q ss_pred             -CCcEEEEeeecCCCCCC
Q psy15128        189 -SGSLQIDVLRDDFRAEP  205 (292)
Q Consensus       189 -~~~l~i~~~~~~d~g~~  205 (292)
                       .+.|.|.++..+|+|.|
T Consensus       155 ~~~~L~i~~v~~~D~G~Y  172 (198)
T 1ugn_A          155 SRAIFSVGPVSPSRRWWY  172 (198)
T ss_dssp             CEEEEEECCCCTTSCEEE
T ss_pred             ceeEEEecccCcccCeEE
Confidence             25799999999888843

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.83  E-value=1e-20  Score=137.65  Aligned_cols=161  Identities=14%  Similarity=0.121  Sum_probs=112.3

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      +|.+...+.. .+.+|+.++|.|.+.+ +.+.+.|+|++..+.....   ........+.|.|.+++.+|+|.|+|.+.|
T Consensus         5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~---~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (196)
T 3p2t_A            5 KPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQ---NPLEPKNKARFSIPSMTEDYAGRYRCYYRS   79 (196)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEE---CCCSSSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccccc---ccccCCceEEEEeccCCcccCceEEEEEeC
Confidence            5666666666 7889999999999987 6779999999875531100   000112346899999999999999999999


Q ss_pred             CCcCe--eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccE---EEcCCC
Q psy15128        116 VAGST--TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRI---NVSSSG  190 (292)
Q Consensus       116 ~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~---~~~~~~  190 (292)
                      ..+..  .....|.|.  ...+++.+...+.. .+.+|+.++|.|.+.+. ++.+.|+|++..+.......   .....+
T Consensus        80 ~~g~~~~s~~~~l~V~--~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~~  155 (196)
T 3p2t_A           80 PVGWSQPSDPLELVMT--GAYSKPTLSALPSP-LVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHGAQQHQA  155 (196)
T ss_dssp             TTEEBCCCCCEEEEEE--CSSCCCEEEEESCS-EECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEEEEEEEE
T ss_pred             CCcccCCCccEEEEec--CCCCCCEEEeCCcc-eecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeecccccccCcce
Confidence            87632  333444443  33345566655543 67899999999999774 56899999998765432111   122345


Q ss_pred             cEEEEeeecCCCCCC
Q psy15128        191 SLQIDVLRDDFRAEP  205 (292)
Q Consensus       191 ~l~i~~~~~~d~g~~  205 (292)
                      .|.|.++..+|+|.|
T Consensus       156 ~L~i~~v~~~d~G~Y  170 (196)
T 3p2t_A          156 EFPMSPVTSVHGGTY  170 (196)
T ss_dssp             EEEECSCCGGGCEEE
T ss_pred             EEEeCCCcccCCCeE
Confidence            799999999888844

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.83  E-value=1.1e-19  Score=141.50  Aligned_cols=126  Identities=22%  Similarity=0.289  Sum_probs=96.8

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEe-----CCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVV-----RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQ   76 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~-----~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~   76 (292)
                      |.+++.+|+|.|+|.+.|..|..... +.|.|..+|.+..     .+....+..|+.+.|.|.+.+.|.+.+.|++++..
T Consensus        66 i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~  144 (305)
T 2nzi_A           66 IASVTDDDATVYQVRATNQGGSVSGT-ASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDL  144 (305)
T ss_dssp             ESSCCGGGCSEEEEEEEETTEEEEEE-EEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSB
T ss_pred             EccCChhhCeEEEEEEEcCCCCccce-EEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEE
Confidence            67899999999999999988776555 8888886655432     23456788899999999999999999999998876


Q ss_pred             EeeccCCCcceeEEeeecEEEEcc-CCCCCCeEEEEEEEeCCcCeeEEEEEEEEe
Q psy15128         77 VLMFPGNAYGHLHVTQEGTLRIQG-VQKEDAGFFVCSALSVAGSTTVRAFLQVTS  130 (292)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~  130 (292)
                      +.  ...............|.|.+ +..+|.|.|+|.+.|..|.......+.+..
T Consensus       145 ~~--~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~  197 (305)
T 2nzi_A          145 ID--NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD  197 (305)
T ss_dssp             CC--SSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEB
T ss_pred             CC--CCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEec
Confidence            53  11111111112345899999 999999999999999998877777777654

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.83  E-value=1.1e-19  Score=134.51  Aligned_cols=139  Identities=17%  Similarity=0.291  Sum_probs=80.2

Q ss_pred             cEEeCCCccEEecCCcEEEEEEEeee-CCCeeEEEECC---eE--EeeccC--------CCcceeEEe---eecEEEEcc
Q psy15128         38 SFVVRPQDQKVGLNGIASFQCVAEGS-PLPSVFWTQEG---SQ--VLMFPG--------NAYGHLHVT---QEGTLRIQG  100 (292)
Q Consensus        38 ~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~v~W~~~~---~~--~~~~~~--------~~~~~~~~~---~~~~l~i~~  100 (292)
                      .+...+ ...+.+|++++|.|.+.+. |.+.+.|+|..   ..  +.....        ....+....   ....|.|.+
T Consensus         3 ~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   81 (218)
T 3s96_B            3 VLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISN   81 (218)
T ss_dssp             SEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESS
T ss_pred             eEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEcc
Confidence            344444 6788999999999999988 88899999832   11  110000        011222221   234799999


Q ss_pred             CCCCCCeEEEEEEEeCCcC-----eeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEecc-CCCC-ceEEEeC
Q psy15128        101 VQKEDAGFFVCSALSVAGS-----TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVG-SPPP-HIRWYKN  173 (292)
Q Consensus       101 ~~~~d~g~Y~C~~~~~~~~-----~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~~~W~~~  173 (292)
                      ++.+|+|.|+|.+.+..+.     ......|.|.... ..+|.+...+.......|+.++|.|.+.+ .|.+ .+.|+++
T Consensus        82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~-~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~  160 (218)
T 3s96_B           82 IQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQP-KSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKAN  160 (218)
T ss_dssp             CCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCC-CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             CCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCC-CCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEEC
Confidence            9999999999999886551     1222344443211 12333333333333344566666666655 3444 5666666


Q ss_pred             CeeCC
Q psy15128        174 GNSLP  178 (292)
Q Consensus       174 ~~~l~  178 (292)
                      |.++.
T Consensus       161 g~~l~  165 (218)
T 3s96_B          161 GTPIT  165 (218)
T ss_dssp             TEEC-
T ss_pred             CEECc
Confidence            55543

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.83  E-value=2.9e-19  Score=131.96  Aligned_cols=130  Identities=18%  Similarity=0.256  Sum_probs=77.1

Q ss_pred             CCCccEEecCCcEEEEEEEeeeCCC---eeEEEECCeEEee-----ccC--------CCcceeEE------eeecEEEEc
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGSPLP---SVFWTQEGSQVLM-----FPG--------NAYGHLHV------TQEGTLRIQ   99 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~~~~---~v~W~~~~~~~~~-----~~~--------~~~~~~~~------~~~~~l~i~   99 (292)
                      .+..+.+.+|++++|.|.+.+.|.+   .|.|+|++.....     ...        ....+...      ..+..|.|.
T Consensus         5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~   84 (218)
T 4frw_A            5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   84 (218)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred             CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence            3456778899999999999887765   4899997643210     000        00011111      123469999


Q ss_pred             cCCCCCCeEEEEEEEeCCcCeeEEE-EEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCe
Q psy15128        100 GVQKEDAGFFVCSALSVAGSTTVRA-FLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGN  175 (292)
Q Consensus       100 ~~~~~d~g~Y~C~~~~~~~~~~~~~-~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~  175 (292)
                      +++.+|+|.|.|.+.+..+...... .+.+.    .+++..........+..|+.+.+.|.+.+.|+|.+.|++++.
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~  157 (218)
T 4frw_A           85 NAVQADEGEYECRVSTFPAGSFQARLRLRVL----VPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVK  157 (218)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEEEEEEEEE----BCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSC
T ss_pred             eccHHHCCceeEEEEeccCceeeeEEEEEEe----eeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCc
Confidence            9999999999999987654433222 22221    112222222333445556666666666666666666666553

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.83  E-value=9.8e-20  Score=129.32  Aligned_cols=131  Identities=18%  Similarity=0.261  Sum_probs=101.8

Q ss_pred             CCCeEEeCCCCceecCCCeEEEEeEeccCC-CCceEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCCCC--------
Q psy15128        135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSP-PPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEP--------  205 (292)
Q Consensus       135 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p-~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g~~--------  205 (292)
                      +.|.+...+....+.+|+.+.|.|.+.+.| .+.+.|++++..+...        ...+.+.++..+|+|.|        
T Consensus         3 p~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~--------~~~~~~~~~~~~d~G~Y~C~~~~~~   74 (170)
T 3ry4_A            3 PKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH--------TQPSYRFKANNNDSGEYTCQTGQTS   74 (170)
T ss_dssp             CBCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC--------CSSEEEEECCGGGCEEEEEEETTSB
T ss_pred             CCCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC--------ccceEEEecccccCeEEEEEEeCCC
Confidence            456777777777899999999999998886 5689999999988753        23455666666666621        


Q ss_pred             ------------------cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccc
Q psy15128        206 ------------------KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGS  267 (292)
Q Consensus       206 ------------------~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~  267 (292)
                                        +...+.+|+.+.|.|.+..+.|.+.+.|+++|..+....               ....|.|.
T Consensus        75 ~s~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~---------------~~~~L~i~  139 (170)
T 3ry4_A           75 LSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH---------------LDPTFSIP  139 (170)
T ss_dssp             CCCCEEEEEECCSEEEECSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES---------------SCCEEEES
T ss_pred             ceEeEEEEEECCceEecCCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC---------------CCCeEEEE
Confidence                              344577899999999985567778999999998874211               11258888


Q ss_pred             cccccccceeEEEEeeccccc
Q psy15128        268 VLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       268 ~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      .+..+|+|.|+|.|.|..|..
T Consensus       140 ~v~~~d~G~Y~C~a~n~~g~~  160 (170)
T 3ry4_A          140 QANHSHSGDYHCTGNIGYTLF  160 (170)
T ss_dssp             SCCGGGCEEEEEEEEETTEEE
T ss_pred             eccccCCEEEEEEEEeCcCcc
Confidence            999999999999999999974

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.83  E-value=1.2e-18  Score=130.71  Aligned_cols=135  Identities=15%  Similarity=0.283  Sum_probs=84.0

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEEC--CeEEe--ec--------cCCCcceeEEe----eecEEEEccCC
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE--GSQVL--MF--------PGNAYGHLHVT----QEGTLRIQGVQ  102 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~--~~~~~--~~--------~~~~~~~~~~~----~~~~l~i~~~~  102 (292)
                      +...+..+.+.+|++++|.|. .+.|.+.+.|+|+  +....  ..        ......+....    ....|.|.+++
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~   81 (238)
T 2p1y_A            3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELAT   81 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCC
T ss_pred             ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCC
Confidence            334566778999999999999 6778889999995  22111  00        00111223222    23479999999


Q ss_pred             CCCCeEEEEEEEeCCcCe-----eEEEEEEEEeecCCC-------CCeEEeCCCCceecCCCeEEEEeEeccCCCCceEE
Q psy15128        103 KEDAGFFVCSALSVAGST-----TVRAFLQVTSVEDTP-------PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRW  170 (292)
Q Consensus       103 ~~d~g~Y~C~~~~~~~~~-----~~~~~l~v~~~~~~~-------~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W  170 (292)
                      .+|+|.|+|.+.+..+..     .....+.|......+       .+.+...+....+.+|++++|.|.+.+.|.+.+.|
T Consensus        82 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W  161 (238)
T 2p1y_A           82 PSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPW  161 (238)
T ss_dssp             GGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEE
T ss_pred             cccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEE
Confidence            999999999999865421     112344443211000       01334445556678888889999888887788888


Q ss_pred             EeCC
Q psy15128        171 YKNG  174 (292)
Q Consensus       171 ~~~~  174 (292)
                      +|++
T Consensus       162 ~k~~  165 (238)
T 2p1y_A          162 YQQF  165 (238)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8864

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.82  E-value=2.4e-19  Score=128.04  Aligned_cols=79  Identities=13%  Similarity=0.278  Sum_probs=57.3

Q ss_pred             CccEEecCCcEEEEEEEe--eeCCCeeEEEE--CCeEEeeccC-----CCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         44 QDQKVGLNGIASFQCVAE--GSPLPSVFWTQ--EGSQVLMFPG-----NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~--~~~~~~v~W~~--~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      ..+...+|++++|.|...  +.+.+.|.|++  ++..+.....     ....+.....++.|.|.+++.+|+|.|+|.+.
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~   86 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIY   86 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEE
T ss_pred             cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEEE
Confidence            345678899999999542  23466899999  8776532211     12344555567799999999999999999999


Q ss_pred             eCCcCeeE
Q psy15128        115 SVAGSTTV  122 (292)
Q Consensus       115 ~~~~~~~~  122 (292)
                      +..+....
T Consensus        87 n~~g~~~~   94 (182)
T 1hnf_A           87 DTKGKNVL   94 (182)
T ss_dssp             ETTSCEEE
T ss_pred             eCCCceeE
Confidence            98776543

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.82  E-value=3.8e-20  Score=136.34  Aligned_cols=134  Identities=21%  Similarity=0.342  Sum_probs=77.0

Q ss_pred             CCccEEecCCcEEEEEEEeeeCCCeeEEEECC--eEEe--ecc-----CCCcceeEEe---eecEEEEccCCCCCCeEEE
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--SQVL--MFP-----GNAYGHLHVT---QEGTLRIQGVQKEDAGFFV  110 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~~~~--~~~-----~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~  110 (292)
                      +....+.+|++++|.|.+.+.|.+.+.|+|+.  ..+.  ...     .....+....   ....|.|.+++.+|+|.|+
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   85 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence            55678899999999999887777789999853  2221  100     0011233222   2348999999999999999


Q ss_pred             EEEEeCCcCe---eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CC-CceEEEeCCeeC
Q psy15128        111 CSALSVAGST---TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PP-PHIRWYKNGNSL  177 (292)
Q Consensus       111 C~~~~~~~~~---~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~~~W~~~~~~l  177 (292)
                      |.+.+.....   .....+.|... ...+|.+...+....+.+|+.++|.|.+.+. |+ +.+.|+++|.++
T Consensus        86 C~~~n~~~~~~~~~~~~~l~V~~~-~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~  156 (212)
T 1nfd_E           86 CLSSYGDNNDLVFGSGTQLTVLRG-PKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATI  156 (212)
T ss_dssp             EEEEETTTTEEEECCCEEEEEECC-CCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEE
T ss_pred             EEEEcccCcccccCCceEEEEccC-CCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEc
Confidence            9998632211   11123333211 1123344433333333456666666666554 33 456666665544

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.82  E-value=7.5e-19  Score=133.16  Aligned_cols=134  Identities=18%  Similarity=0.306  Sum_probs=87.9

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--e---EEeec-cCC----CcceeEE-----eeecEEEEccCCC
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--S---QVLMF-PGN----AYGHLHV-----TQEGTLRIQGVQK  103 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~---~~~~~-~~~----~~~~~~~-----~~~~~l~i~~~~~  103 (292)
                      +...+....+.+|++++|.|.+.+.|.+.+.|+|..  .   .+... ...    ...++..     .....|.|.+++.
T Consensus         6 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~   85 (256)
T 3tf7_C            6 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHR   85 (256)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCG
T ss_pred             EEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCc
Confidence            444556778899999999999998888999999832  1   11100 000    0112222     1234799999999


Q ss_pred             CCCeEEEEEEEeCCcCe----eEEEEEEEEee---------------cCCCCCeEEeCCCCceecCCCeEEEEeEeccCC
Q psy15128        104 EDAGFFVCSALSVAGST----TVRAFLQVTSV---------------EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSP  164 (292)
Q Consensus       104 ~d~g~Y~C~~~~~~~~~----~~~~~l~v~~~---------------~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p  164 (292)
                      +|+|.|+|.+.+..+..    .....|.|...               ....++.+...+....+.+|++++|.|.+.+. 
T Consensus        86 ~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~-  164 (256)
T 3tf7_C           86 SDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS-  164 (256)
T ss_dssp             GGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSC-
T ss_pred             ccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC-
Confidence            99999999998865421    11234555421               02235566666677777899999999998776 


Q ss_pred             CCceEEEeC
Q psy15128        165 PPHIRWYKN  173 (292)
Q Consensus       165 ~~~~~W~~~  173 (292)
                      .+.+.|++.
T Consensus       165 ~~~v~W~k~  173 (256)
T 3tf7_C          165 HNYMYWYRQ  173 (256)
T ss_dssp             CSEEEEEEE
T ss_pred             ceEEEEEEE
Confidence            678999975

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.82  E-value=6.2e-19  Score=130.73  Aligned_cols=174  Identities=15%  Similarity=0.243  Sum_probs=99.6

Q ss_pred             CCccEEecCCcEEEEEEEeeeCC-----CeeEEEECCeEEeeccCCC----------cceeEEee------ecEEEEccC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSPL-----PSVFWTQEGSQVLMFPGNA----------YGHLHVTQ------EGTLRIQGV  101 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~~-----~~v~W~~~~~~~~~~~~~~----------~~~~~~~~------~~~l~i~~~  101 (292)
                      +..+.+.+|+++.|.|.+.+.|.     ..+.|++++..+.......          ..+.....      +..|.|.++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   87 (222)
T 3sbw_C            8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDV   87 (222)
T ss_dssp             CSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSC
T ss_pred             CccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCc
Confidence            34557889999999999877653     3899999875443222110          12222221      248999999


Q ss_pred             CCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCC
Q psy15128        102 QKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED  181 (292)
Q Consensus       102 ~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~  181 (292)
                      +.+|+|.|+|.+.+ .+.....+.|.|..  ....+...                                         
T Consensus        88 ~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~--~~~~~~~~-----------------------------------------  123 (222)
T 3sbw_C           88 KLQDAGVYRCMISY-GGADYKRITVKVNA--PYNKINQR-----------------------------------------  123 (222)
T ss_dssp             CGGGCEEEEEEEES-SSEEEEEEEEEEEB--CCCCCEEE-----------------------------------------
T ss_pred             ccccCeEEEEEEEe-CCCceeEEEEEEEC--CCCCCCce-----------------------------------------
Confidence            99999999999998 34333334443321  00000000                                         


Q ss_pred             ccEEEcCCCcEEEEeeecCCCCCCcceEEeCCCceEEEeeCCCCCCCCeEEEeEc-CeEeccCCCceEEecCCCcccccc
Q psy15128        182 TRINVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKN-GQFIDLESSKRVSILGDPWFDSRR  260 (292)
Q Consensus       182 ~~~~~~~~~~l~i~~~~~~d~g~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~-g~~~~~~~~~~~~~~~~~~~~~~~  260 (292)
                                  +            ...+..|+.+.|.|.+ .|.|.+.+.|+++ |..+............++.+.   
T Consensus       124 ------------~------------~~~~~~g~~v~L~C~~-~g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~---  175 (222)
T 3sbw_C          124 ------------I------------LVVDPVTSEHELTCQA-EGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFN---  175 (222)
T ss_dssp             ------------E------------EEEETTTTEEEEEEEE-EEBSCCEEEEEETTCCEECCEEEEEECC----CEE---
T ss_pred             ------------e------------eeeecCCCcEEEEEEe-cCCCCCeEEEEECCCceecCccceEEEcCCCCCEE---
Confidence                        0            0022356677777776 5677777777776 554421111111111111111   


Q ss_pred             ccccccccccccccceeEEEEeeccccccc
Q psy15128        261 SRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       261 ~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                        ...+..+...|.|.|+|.|.|..|.+..
T Consensus       176 --~~~~l~v~~~d~g~Y~C~a~n~~g~~~~  203 (222)
T 3sbw_C          176 --VTSTLRINTTTNEIFYCTFRRLDPEENH  203 (222)
T ss_dssp             --EEEEEEEECCTTCEEEEEEEETTTTEEE
T ss_pred             --EEEEEEEeccCCcEEEEEEEeCccceee
Confidence              1112234578999999999999998764

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.82  E-value=5.1e-20  Score=135.54  Aligned_cols=131  Identities=15%  Similarity=0.236  Sum_probs=83.3

Q ss_pred             ccEEecCCcEEEEEEEeeeCCCeeEEEEC--CeEE--eeccC-----CCcceeE---EeeecEEEEccCCCCCCeEEEEE
Q psy15128         45 DQKVGLNGIASFQCVAEGSPLPSVFWTQE--GSQV--LMFPG-----NAYGHLH---VTQEGTLRIQGVQKEDAGFFVCS  112 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~--~~~~--~~~~~-----~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~C~  112 (292)
                      ...+.+|++++|.|.+.  +.+.+.|+|+  +...  .....     ....+..   ......|.|.+++.+|+|.|+|.
T Consensus         9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   86 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG   86 (211)
T ss_dssp             EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred             eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence            66788999999999998  7889999994  2211  11100     0112222   22234799999999999999999


Q ss_pred             EEeCCcC--eeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC--CCCceEEEeCCeeCC
Q psy15128        113 ALSVAGS--TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS--PPPHIRWYKNGNSLP  178 (292)
Q Consensus       113 ~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~--p~~~~~W~~~~~~l~  178 (292)
                      +.+..+.  ......|.|... ...+|.+...+....+..|+.++|.|.+.+.  |.+.+.|+++|.++.
T Consensus        87 ~~~~~~~~~~~~~~~l~V~~~-~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~  155 (211)
T 3tv3_L           87 SLVGNWDVIFGGGTKLTVLGQ-PKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVK  155 (211)
T ss_dssp             EEETTTEEEECCCEEEEECCS-CCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             EecCCCceeECCCceEEEeCC-CCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecC
Confidence            9987652  233344544421 1134455544444444568888888887664  245678888776654

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.82  E-value=3.3e-19  Score=129.08  Aligned_cols=124  Identities=23%  Similarity=0.362  Sum_probs=100.7

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeecc
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFP   81 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~   81 (292)
                      |.+++.+|+|.|+|.+.+..+......+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....
T Consensus        66 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~  145 (191)
T 1epf_A           66 IYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKK  145 (191)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGC
T ss_pred             EccCCcccCEEEEEEEEcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccC
Confidence            67899999999999999987544444488999999998888888889999999999999999999999999998764222


Q ss_pred             CCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128         82 GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  128 (292)
Q Consensus        82 ~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v  128 (292)
                      .   .+.....++.|.|.+++.+|+|.|+|.+.|..+.......+.+
T Consensus       146 ~---~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          146 D---VRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             C---TTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             C---ceEEEecCCeEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            1   2333444568999999999999999999998766555555544

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.81  E-value=2.1e-19  Score=137.16  Aligned_cols=129  Identities=17%  Similarity=0.344  Sum_probs=79.5

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEe---eeCCCeeEEEECCeEEe------ec-------cCCCcceeEEe-----eecE
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAE---GSPLPSVFWTQEGSQVL------MF-------PGNAYGHLHVT-----QEGT   95 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~---~~~~~~v~W~~~~~~~~------~~-------~~~~~~~~~~~-----~~~~   95 (292)
                      +.+...+....+.+|+.++|.|.+.   +.+.+.+.|++++....      ..       ......+..+.     .+..
T Consensus         6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   85 (268)
T 3mj6_A            6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS   85 (268)
T ss_dssp             ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred             cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence            3445566677899999999999987   56677899999653210      00       00001222221     2267


Q ss_pred             EEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEe---ccCCCCceEEEe
Q psy15128         96 LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA---VGSPPPHIRWYK  172 (292)
Q Consensus        96 l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~---~~~p~~~~~W~~  172 (292)
                      |.|.+++.+|+|.|+|.+.+..+.......+.+.+..        ..+....+.+|+.++|.|.+   .+.|.+.+.|++
T Consensus        86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~--------~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~  157 (268)
T 3mj6_A           86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP--------EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMF  157 (268)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC--------CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEE
T ss_pred             EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEec--------cCCCccccccCCcEEEEEEecCCCCCCccceEEEe
Confidence            9999999999999999999875554444444443321        12233456677777777777   455667777776


Q ss_pred             C
Q psy15128        173 N  173 (292)
Q Consensus       173 ~  173 (292)
                      +
T Consensus       158 ~  158 (268)
T 3mj6_A          158 S  158 (268)
T ss_dssp             E
T ss_pred             c
Confidence            4

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.81  E-value=4.3e-19  Score=129.51  Aligned_cols=163  Identities=12%  Similarity=0.117  Sum_probs=107.1

Q ss_pred             eCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEE
Q psy15128         34 HAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA  113 (292)
Q Consensus        34 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~  113 (292)
                      ..+|.+...+. ..+.+|++++|.|.+.+ +.+.+.|+|++..+...... ...........|.|.+++.+|+|.|+|.+
T Consensus         6 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~-~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a   82 (201)
T 1nkr_A            6 HRKPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLI-GEHHDGVSKANFSISRMTQDLAGTYRCYG   82 (201)
T ss_dssp             -CCCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEE-CEEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceee-eecCCCCceEEEEeccCCcccCeEEEEeE
Confidence            34566666664 67889999999999864 67799999998654211000 00001123568999999999999999999


Q ss_pred             EeCCc-----CeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcC
Q psy15128        114 LSVAG-----STTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSS  188 (292)
Q Consensus       114 ~~~~~-----~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~  188 (292)
                      .+...     .......|.|.  ...++|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+|+|..+...........
T Consensus        83 ~~~~~~~~~~~~s~~~~l~V~--~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~  158 (201)
T 1nkr_A           83 SVTHSPYQVSAPSDPLDIVII--GLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVN  158 (201)
T ss_dssp             EBTTBTTCCCCCCCCEEEEEE--CSSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEET
T ss_pred             ecCCCCccccCCCCCEEEEee--ccCCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccC
Confidence            86421     12233445444  2334566665554 46889999999999876 5678999999987754211111111


Q ss_pred             ---CCcEEEEeeecCCCCCC
Q psy15128        189 ---SGSLQIDVLRDDFRAEP  205 (292)
Q Consensus       189 ---~~~l~i~~~~~~d~g~~  205 (292)
                         .+.|.|.++.  |+|.|
T Consensus       159 ~~~~~~L~i~~v~--d~G~Y  176 (201)
T 1nkr_A          159 GTFQADFPLGPAT--HGGTY  176 (201)
T ss_dssp             TEEEEEEEEEECC--SCEEE
T ss_pred             CceEEEEEeCCcC--CCeeE
Confidence               3478888887  77743

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.81  E-value=5.7e-19  Score=128.09  Aligned_cols=121  Identities=31%  Similarity=0.424  Sum_probs=97.3

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEe---CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEe
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH---APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVL   78 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~   78 (292)
                      |.+++.+|+|.|+|.+.+..+..... +.|.|.   .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.
T Consensus        67 i~~~~~~d~G~Y~C~~~n~~~~~~~~-~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~  145 (194)
T 2a38_A           67 IPAVTKANSGRYSLKATNGSGQATST-AELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQ  145 (194)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEEEE-EEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECC
T ss_pred             ECCCCcccCEEEEEEEEcCCceEeEE-EEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECC
Confidence            67899999999999999988776655 788887   45667777777889999999999999999999999999998763


Q ss_pred             eccCCCcceeEEeee---cEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128         79 MFPGNAYGHLHVTQE---GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  128 (292)
Q Consensus        79 ~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v  128 (292)
                      .  .   .+.....+   ..|.|.++..+|.|.|+|.+.|..|.....+.|.|
T Consensus       146 ~--~---~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          146 S--S---LDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             C--S---SSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             C--C---CcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence            1  1   12222222   27999999999999999999999887776666654

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.80  E-value=1.3e-18  Score=128.02  Aligned_cols=124  Identities=26%  Similarity=0.487  Sum_probs=99.4

Q ss_pred             cccCCc-CCCeeEEEEEEecccccccccEEEEEeCC-------CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEEC
Q psy15128          2 ITEVKK-SDEGKYQCYVQNMVGERETKPALLTVHAP-------PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE   73 (292)
Q Consensus         2 i~~v~~-~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~   73 (292)
                      |.+++. +|+|.|+|.+.+..+......+.|.|..+       |.+...+....+.+|+.+.|.|.+.+.|.+.+.|+++
T Consensus        68 i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~  147 (212)
T 2yd1_A           68 IEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKN  147 (212)
T ss_dssp             ESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEET
T ss_pred             EEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEEC
Confidence            678888 99999999999988774444488888765       6677777778888999999999999999999999999


Q ss_pred             CeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEE-EEEEEEe
Q psy15128         74 GSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR-AFLQVTS  130 (292)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~-~~l~v~~  130 (292)
                      +..+...    ..+. ...++.|.|.+++.+|+|.|+|.+.|..|..... +.|.|..
T Consensus       148 ~~~~~~~----~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~  200 (212)
T 2yd1_A          148 QTKVDMS----NPRY-SLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV  200 (212)
T ss_dssp             TEECCTT----STTE-EEETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CeEcccC----CCeE-EccCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEe
Confidence            9876321    1122 2335699999999999999999999998876544 6677664

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.80  E-value=1.4e-18  Score=126.18  Aligned_cols=118  Identities=30%  Similarity=0.538  Sum_probs=97.6

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCC-eeEEEECCeEEeec
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMF   80 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~   80 (292)
                      |.+++.+|+|.|+|.+.+..+......+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+...
T Consensus        72 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~  151 (195)
T 2c5d_C           72 ITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATA  151 (195)
T ss_dssp             ESSCCSTTCEEEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSS
T ss_pred             EEeccccCCcEEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCC
Confidence            67899999999999999987776666699999999999888888889999999999999999999 99999998865321


Q ss_pred             cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCee-EEEEEEE
Q psy15128         81 PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT-VRAFLQV  128 (292)
Q Consensus        81 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~-~~~~l~v  128 (292)
                      ..  .     ...+.|.|.+++  |+|.|+|.+.|..|... ..+.|.|
T Consensus       152 ~~--~-----~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          152 PG--H-----GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             TT--S-----SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CC--c-----CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            11  0     345689999887  78999999999888664 4566655

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.80  E-value=6.7e-19  Score=128.08  Aligned_cols=125  Identities=22%  Similarity=0.290  Sum_probs=96.2

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeC-----CCccEEecCCcEEEEEEEeeeCCCeeEEEECCeE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVR-----PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQ   76 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~-----~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~   76 (292)
                      |.+++.+|+|.|+|.+.+..+..... +.|.|..+|.+...     +....+.+|+.+.|.|.+.+.|.+.+.|++++..
T Consensus        66 i~~~~~~d~G~Y~C~~~n~~g~~~~~-~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~  144 (197)
T 2j8h_A           66 IASVTDDDATVYQVRATNQGGSVSGT-ASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDL  144 (197)
T ss_dssp             ECSCCGGGCSEEEEEEEETTEEEEEE-EEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCE
T ss_pred             ECcCCHHhCEEEEEEEEECCCceeEE-EEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEE
Confidence            67899999999999999987776555 88888876654322     2345678899999999999999999999999987


Q ss_pred             EeeccCCCcceeEEeeecEEEEcc-CCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128         77 VLMFPGNAYGHLHVTQEGTLRIQG-VQKEDAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      +.  ...............|.|.+ +..+|.|.|+|.+.|..|.....+.|.|.
T Consensus       145 ~~--~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          145 ID--NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             EC--SSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ee--cCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence            64  11121111122346899999 99999999999999998887777766654

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.80  E-value=1.1e-18  Score=130.61  Aligned_cols=163  Identities=15%  Similarity=0.063  Sum_probs=112.7

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      .+|.+...+.. .+.+|++++|.|.+.+ +...+.|+|++..+.......   ........|.|.+++.+|+|.|+|.+.
T Consensus         6 ~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~---~~~~~~~~L~I~~v~~~DsG~Y~C~~~   80 (242)
T 1p6f_A            6 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKP---PERINKVKFYIPDMNSRMAGQYSCIYR   80 (242)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSS---CTTCCEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccc---cCCcceeEEEecCCCcccCeEEEEEEe
Confidence            35666666665 7899999999999864 456899999998764221110   111235589999999999999999998


Q ss_pred             eCCcCe--eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCCCcE
Q psy15128        115 SVAGST--TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSL  192 (292)
Q Consensus       115 ~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l  192 (292)
                      +..+..  +....|.|.  ...+.|.+...+ ...+.+|+.++|.|.+.+. .+.+.|+|+|..+..  ........+.|
T Consensus        81 ~~~~~s~~S~~~~L~V~--~~~~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~--~~~~~~~~~~l  154 (242)
T 1p6f_A           81 VGELWSEPSNLLDLVVT--EMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV--QRGYGKVQAEF  154 (242)
T ss_dssp             ETTEECCCCCCEEEEEE--CCSCCCEEEEES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEE--EEEECSSEEEE
T ss_pred             cCCccccCCcceEEEee--cccCCCceEccC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCc--cccCCCceEEE
Confidence            754332  223444443  333456665554 3468899999999998754 568999999876643  11122234589


Q ss_pred             EEEeeecCCCCCCcce
Q psy15128        193 QIDVLRDDFRAEPKDT  208 (292)
Q Consensus       193 ~i~~~~~~d~g~~~~~  208 (292)
                      .|.+++.+|+|.|...
T Consensus       155 ~I~~v~~~d~G~Y~C~  170 (242)
T 1p6f_A          155 PLGPVTTAHRGTYRCF  170 (242)
T ss_dssp             EEEECCGGGCEEEEEE
T ss_pred             EeCCCccccCEEEEEE
Confidence            9999999999977543

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.80  E-value=4.3e-18  Score=129.24  Aligned_cols=138  Identities=16%  Similarity=0.209  Sum_probs=79.9

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEEC---Ce-E-Eeecc---------CCCcceeE-----EeeecEEE
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE---GS-Q-VLMFP---------GNAYGHLH-----VTQEGTLR   97 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~---~~-~-~~~~~---------~~~~~~~~-----~~~~~~l~   97 (292)
                      |.+...+....+.+|++++|.|.+.+.+.+.+.|+|.   .. . +....         .....+..     ......|.
T Consensus         3 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   82 (259)
T 3omz_A            3 SNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMI   82 (259)
T ss_dssp             --------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEE
T ss_pred             cccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEE
Confidence            4455556678899999999999998888889999983   11 1 11111         00000111     11234799


Q ss_pred             EccCCCCCCeEEEEEEEeCCcC---eeEEEEEEEEeecCCC------------CCeEEeCCCCceecCCCeEEEEeEecc
Q psy15128         98 IQGVQKEDAGFFVCSALSVAGS---TTVRAFLQVTSVEDTP------------PPIVQVGPSNQTLPLHSVAFLPCQAVG  162 (292)
Q Consensus        98 i~~~~~~d~g~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~------------~~~~~~~~~~~~~~~g~~v~l~C~~~~  162 (292)
                      |.+++.+|+|.|.|.+.+..+.   ......|.|......+            .+.+...+....+.+|++++|.|.+.+
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~  162 (259)
T 3omz_A           83 LRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYET  162 (259)
T ss_dssp             ESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEEC
T ss_pred             ECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCC
Confidence            9999999999999999986542   2223445554321111            244555566677888999999998866


Q ss_pred             C-CCCceEEEeCC
Q psy15128        163 S-PPPHIRWYKNG  174 (292)
Q Consensus       163 ~-p~~~~~W~~~~  174 (292)
                      . +.+.+.|++++
T Consensus       163 ~~~~~~v~W~k~~  175 (259)
T 3omz_A          163 SWWSYYIFWYKRL  175 (259)
T ss_dssp             CCSSCEEEEEEEC
T ss_pred             ccCCceEEEeeeC
Confidence            4 67789998853

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.79  E-value=6.5e-19  Score=129.79  Aligned_cols=163  Identities=18%  Similarity=0.220  Sum_probs=106.0

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCe--EE--ee-----ccCCCcceeEEe---eecEEEEccCCCCCCe
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGS--QV--LM-----FPGNAYGHLHVT---QEGTLRIQGVQKEDAG  107 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~--~~--~~-----~~~~~~~~~~~~---~~~~l~i~~~~~~d~g  107 (292)
                      ...+....+.+|++++|.|.+.+.|.+.+.|+|++.  ..  ..     .......+....   ....|.|.+++.+|+|
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   84 (213)
T 3d9a_L            5 TQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFG   84 (213)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCE
Confidence            344567788999999999999988888999998532  11  00     001111233332   2338999999999999


Q ss_pred             EEEEEEEeCCcCeeE-EEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEecc-CCCC-ceEEEeCCeeCCCC-Ccc
Q psy15128        108 FFVCSALSVAGSTTV-RAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVG-SPPP-HIRWYKNGNSLPPE-DTR  183 (292)
Q Consensus       108 ~Y~C~~~~~~~~~~~-~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~~~W~~~~~~l~~~-~~~  183 (292)
                      .|+|.+.+..+.... ...+.|..  ...+|.+...+.......|+.++|.|.+.+ .|.+ .+.|+++|.++... ...
T Consensus        85 ~Y~C~~~~~~~~~~~~~~~l~V~~--~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~  162 (213)
T 3d9a_L           85 MYFCQQSNSWPYTFGGGTKLEIKR--ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNS  162 (213)
T ss_dssp             EEEEEECSSSSCEECCCEEEEECC--CCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEE
T ss_pred             EEEEeeecCCcceeCCCEEEEEec--CCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeec
Confidence            999999987654221 23454432  222455555444444557999999999987 5555 79999999988764 111


Q ss_pred             E--EEcCC------CcEEEEeeecCCCCC
Q psy15128        184 I--NVSSS------GSLQIDVLRDDFRAE  204 (292)
Q Consensus       184 ~--~~~~~------~~l~i~~~~~~d~g~  204 (292)
                      .  ....+      ..|.|.++..+|+|.
T Consensus       163 ~~~~~~~~~~~~~~s~L~i~~~~~~d~G~  191 (213)
T 3d9a_L          163 WTDQDSKDSTYSMSSTLTLTKDEYERHNS  191 (213)
T ss_dssp             ECCCCTTTCCEEEEEEEEEEHHHHHHCCE
T ss_pred             CCCccCCCCCEEEEEEEEEeccccCCCCE
Confidence            1  11112      267888888878773

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.79  E-value=1.3e-18  Score=131.33  Aligned_cols=131  Identities=21%  Similarity=0.296  Sum_probs=85.1

Q ss_pred             CCccEEecCCcEEEEEEEeeeCCCe-----eEEEECCeE----Eee--ccCCC------ccee----EEeeecEEEEccC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSPLPS-----VFWTQEGSQ----VLM--FPGNA------YGHL----HVTQEGTLRIQGV  101 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~~~~-----v~W~~~~~~----~~~--~~~~~------~~~~----~~~~~~~l~i~~~  101 (292)
                      +....+.+|++++|.|.+.+.|.+.     +.|++++..    +..  ..+..      ..+.    ....+..|.|.++
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v   89 (248)
T 3pv7_A           10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGI   89 (248)
T ss_dssp             TSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSC
T ss_pred             CCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCC
Confidence            3455788999999999998877665     999996321    100  00000      0000    0012335999999


Q ss_pred             CCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEecc-CCCC-ceEEEeCCeeCCC
Q psy15128        102 QKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVG-SPPP-HIRWYKNGNSLPP  179 (292)
Q Consensus       102 ~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~~~W~~~~~~l~~  179 (292)
                      +.+|+|.|+|.+.+..+.......|.|..     +|.+...+. .....|+.+.|.|.+.+ .|.+ .+.|++++.++..
T Consensus        90 ~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~-----~P~v~~~~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~  163 (248)
T 3pv7_A           90 QLEEAGEYRCEVVVTPLKAQGTVQLEVVA-----SPASRLLLD-QVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPH  163 (248)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEEB-----CCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSSCS
T ss_pred             CHHHCeEEEEEEEeCCccceeEEEEEEec-----CCceEEecC-CccccCCCcEEEEEEccEECCCeEEEEEECCccCCC
Confidence            99999999999998776666666666653     444554444 33456778889999988 6888 8999999987654

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.79  E-value=1.6e-19  Score=131.26  Aligned_cols=144  Identities=11%  Similarity=0.096  Sum_probs=90.8

Q ss_pred             CCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccE-EEcCCCcEEEEeeecCCCCCC--------
Q psy15128        135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRI-NVSSSGSLQIDVLRDDFRAEP--------  205 (292)
Q Consensus       135 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~-~~~~~~~l~i~~~~~~d~g~~--------  205 (292)
                      ++|.+...|.. .+.+|+.++|.|.+.+.|. .+.|+|++..+....... .....+.|.|.++..+|+|.|        
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (196)
T 2d3v_A            4 SKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPA   81 (196)
T ss_dssp             CBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCC
Confidence            45666666653 7889999999999987755 899999998775321100 112234688888888888711        


Q ss_pred             -------------------------cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCcccccc
Q psy15128        206 -------------------------KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRR  260 (292)
Q Consensus       206 -------------------------~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~  260 (292)
                                               +...+.+|+.++|.|.+ .+.| +.+.|+|+|..+..... .......+    ..
T Consensus        82 g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~-~~~p-~~~~W~k~g~~~~~~~~-~~~~~~~~----~~  154 (196)
T 2d3v_A           82 GWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGS-RLRF-DRFILTEEGDHKLSWTL-DSQLTPSG----QF  154 (196)
T ss_dssp             EECBCCCCEEEEEECSSCCCEEEC-----------CEEEEEE-SSCC-SEEEEEEC---CCEEEE-ECEECTTS----CE
T ss_pred             CcCCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEEc-CCCC-CEEEEEccCCccccccc-ccccccCC----Cc
Confidence                                     12356789999999998 7777 89999999987631110 10111111    11


Q ss_pred             ccccccccccccccceeEEEEeecccc
Q psy15128        261 SRSIFGSVLGALSDDQWKLIAKNIRNQ  287 (292)
Q Consensus       261 ~~~l~i~~~~~~~~g~y~C~a~n~~g~  287 (292)
                      ...|.|..+..+|+|.|+|.|.|..+.
T Consensus       155 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~  181 (196)
T 2d3v_A          155 QALFPVGPVTPSHRWMLRCYGSRRHIL  181 (196)
T ss_dssp             EEEEECCCCBTTBCEEEEEEEEETTEE
T ss_pred             eeEEEeeecCcccCeeEEEEEEccCCC
Confidence            236889999999999999999998763

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.79  E-value=5.6e-18  Score=128.40  Aligned_cols=138  Identities=13%  Similarity=0.241  Sum_probs=88.5

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeee--CCCeeEEEECC--e---EEeec---------cCCCcceeEEee-----ec
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGS--PLPSVFWTQEG--S---QVLMF---------PGNAYGHLHVTQ-----EG   94 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~--~---~~~~~---------~~~~~~~~~~~~-----~~   94 (292)
                      ++.+...+..+.+.+|++++|.|.+.+.  +.+.+.|+|..  .   .+...         ......+.....     ..
T Consensus         6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   85 (256)
T 3juy_B            6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTA   85 (256)
T ss_dssp             -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEE
T ss_pred             ceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEE
Confidence            4555667778889999999999999873  66789999742  1   11100         111123333332     23


Q ss_pred             EEEEccCCCCCCeEEEEEEEeC------------CcCeeEEEEEEEEeecCC----------CCCeEEeCCCCceecCCC
Q psy15128         95 TLRIQGVQKEDAGFFVCSALSV------------AGSTTVRAFLQVTSVEDT----------PPPIVQVGPSNQTLPLHS  152 (292)
Q Consensus        95 ~l~i~~~~~~d~g~Y~C~~~~~------------~~~~~~~~~l~v~~~~~~----------~~~~~~~~~~~~~~~~g~  152 (292)
                      .|.|.+++.+|+|.|.|.+.+.            .........|.|......          .++.+...+....+.+|+
T Consensus        86 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~  165 (256)
T 3juy_B           86 YMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGE  165 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTS
T ss_pred             EEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCC
Confidence            6999999999999999999875            111222334444321110          033455556667788888


Q ss_pred             eEEEEeEeccCCC-CceEEEeC
Q psy15128        153 VAFLPCQAVGSPP-PHIRWYKN  173 (292)
Q Consensus       153 ~v~l~C~~~~~p~-~~~~W~~~  173 (292)
                      +++|.|.+.+.+. +.+.|++.
T Consensus       166 ~v~L~C~~~~~~~~~~v~W~k~  187 (256)
T 3juy_B          166 RATFSCRSSHSIRSRRVAWYQH  187 (256)
T ss_dssp             CEEEEEEESSCCTTCCEEEEEE
T ss_pred             CEEEEEEECCCcCCeeEEEEEE
Confidence            8999998877765 78888874

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.79  E-value=8.3e-20  Score=132.80  Aligned_cols=142  Identities=14%  Similarity=0.174  Sum_probs=99.9

Q ss_pred             CCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEE-EcCCCcEEEEeeecCCCCCC--------
Q psy15128        135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRIN-VSSSGSLQIDVLRDDFRAEP--------  205 (292)
Q Consensus       135 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~-~~~~~~l~i~~~~~~d~g~~--------  205 (292)
                      ++|.+...|.. .+.+|+.++|.|.+.+ +.+.+.|+|++..+........ ....+.|.|.++..+|+|.|        
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (196)
T 3p2t_A            4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPV   81 (196)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCC
Confidence            45666666666 7889999999999987 6789999999987754211100 12235788888888888822        


Q ss_pred             -------------------------cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCcccccc
Q psy15128        206 -------------------------KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRR  260 (292)
Q Consensus       206 -------------------------~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~  260 (292)
                                               +...+.+|+.++|.|.+ .+ +++.+.|+++|..+..........      ....
T Consensus        82 g~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~~~~~~~~~~------~~~~  153 (196)
T 3p2t_A           82 GWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQS-RS-PMDTFLLCKERAAHPLLCLRSEHG------AQQH  153 (196)
T ss_dssp             EEBCCCCCEEEEEECSSCCCEEEEESCSEECTTCCEEEEEEE-EE-EEEEEEEEETTCCCGGGSEEEEEE------EEEE
T ss_pred             cccCCCccEEEEecCCCCCCEEEeCCcceecCCCeEEEEEec-CC-CCCEEEEEeCCCcccceeeccccc------ccCc
Confidence                                     11246789999999998 55 456899999998764221111100      0012


Q ss_pred             ccccccccccccccceeEEEEeeccc
Q psy15128        261 SRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       261 ~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      ...|.|..+..+|+|.|+|.|.|..+
T Consensus       154 ~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          154 QAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             ceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            23688999999999999999999987

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.79  E-value=4.9e-18  Score=128.74  Aligned_cols=76  Identities=18%  Similarity=0.284  Sum_probs=52.7

Q ss_pred             CCccEEecCCcEEEEEEEeeeC--CCeeEEEECC--eE---Eeecc--------CCCcceeEEee-----ecEEEEccCC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSP--LPSVFWTQEG--SQ---VLMFP--------GNAYGHLHVTQ-----EGTLRIQGVQ  102 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~---~~~~~--------~~~~~~~~~~~-----~~~l~i~~~~  102 (292)
                      +....+.+|++++|.|.+.+.|  .+.+.|+|+.  ..   +....        .....++....     ...|.|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (257)
T 1f3r_B            7 SGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQ   86 (257)
T ss_dssp             ECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCC
T ss_pred             CCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCC
Confidence            3455788999999999998874  6789999852  11   11000        01123333332     3489999999


Q ss_pred             CCCCeEEEEEEEeCCc
Q psy15128        103 KEDAGFFVCSALSVAG  118 (292)
Q Consensus       103 ~~d~g~Y~C~~~~~~~  118 (292)
                      .+|+|.|+|.+.+..+
T Consensus        87 ~~DsG~Y~C~a~n~~g  102 (257)
T 1f3r_B           87 TDDTGTYYCTRDLYGG  102 (257)
T ss_dssp             TTCCEEEEEEEESSSS
T ss_pred             cccCEEEEEEEccccc
Confidence            9999999999998753

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.79  E-value=2.5e-18  Score=126.52  Aligned_cols=123  Identities=29%  Similarity=0.456  Sum_probs=95.9

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeC-CCcEEeCCCccEEecCCcEEEEEEE-eeeCCCeeEEEECCeEEee
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA-PPSFVVRPQDQKVGLNGIASFQCVA-EGSPLPSVFWTQEGSQVLM   79 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~   79 (292)
                      |.+++.+|+|.|+|.+.+..+......+.|.|.. ++.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..
T Consensus        76 i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~  155 (212)
T 2v9r_A           76 HGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDD  155 (212)
T ss_dssp             CCSSCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECT
T ss_pred             ecCCCcccCeEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCC
Confidence            5678999999999999998877655557888875 4445556667788999999999998 8889999999999987742


Q ss_pred             ccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEE-EEEEEE
Q psy15128         80 FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR-AFLQVT  129 (292)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~-~~l~v~  129 (292)
                      .    .. .....++.|.|.+++.+|.|.|+|.+.|..|..... +.|.|.
T Consensus       156 ~----~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~  201 (212)
T 2v9r_A          156 K----DE-RITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVL  201 (212)
T ss_dssp             T----ST-TEEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             C----cc-eEEccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEE
Confidence            1    11 122346689999999999999999999988765433 566665

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.79  E-value=9.7e-18  Score=127.08  Aligned_cols=131  Identities=14%  Similarity=0.224  Sum_probs=82.5

Q ss_pred             CCccEEecCCcEEEEEEEeeeC--CCeeEEEECC--eEEeec------------cCCCcceeEEee-----ecEEEEccC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSP--LPSVFWTQEG--SQVLMF------------PGNAYGHLHVTQ-----EGTLRIQGV  101 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~~~~------------~~~~~~~~~~~~-----~~~l~i~~~  101 (292)
                      +....+.+|++++|.|.+.+.+  .+.+.|+|..  ......            ......++....     ...|.|.++
T Consensus         9 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   88 (256)
T 3umt_A            9 SGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSL   88 (256)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             cCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCC
Confidence            3445688999999999998755  6789999842  111100            001112333332     225999999


Q ss_pred             CCCCCeEEEEEEEeCC----cCeeEEEEEEEEeec-----------CCCCCeEEeCCCCceecCCCeEEEEeEeccCCCC
Q psy15128        102 QKEDAGFFVCSALSVA----GSTTVRAFLQVTSVE-----------DTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP  166 (292)
Q Consensus       102 ~~~d~g~Y~C~~~~~~----~~~~~~~~l~v~~~~-----------~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~  166 (292)
                      +.+|+|.|+|.+.+..    +.......|.|....           ...++.+...+....+.+|++++|.|.+.+.+.+
T Consensus        89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~  168 (256)
T 3umt_A           89 TSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGS  168 (256)
T ss_dssp             CGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTT
T ss_pred             CcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCc
Confidence            9999999999998762    212223445443210           0013445555555677788888888888777777


Q ss_pred             ceEEEeC
Q psy15128        167 HIRWYKN  173 (292)
Q Consensus       167 ~~~W~~~  173 (292)
                      .+.|+|+
T Consensus       169 ~v~W~k~  175 (256)
T 3umt_A          169 NLNWLQQ  175 (256)
T ss_dssp             CEEEEEE
T ss_pred             EEEEEEE
Confidence            8888874

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.79  E-value=1.2e-17  Score=128.32  Aligned_cols=132  Identities=15%  Similarity=0.280  Sum_probs=81.3

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeC--CCeeEEEECC--eEEe--ec-c---------CCCcceeEEee-----ecEEEE
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSP--LPSVFWTQEG--SQVL--MF-P---------GNAYGHLHVTQ-----EGTLRI   98 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~~--~~-~---------~~~~~~~~~~~-----~~~l~i   98 (292)
                      ...|....+.+|++++|.|.+.+.+  .+.+.|+|++  ....  .. .         .....+.....     ...|.|
T Consensus        30 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I  109 (282)
T 1qok_A           30 LQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQL  109 (282)
T ss_dssp             EEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEE
Confidence            4456677899999999999998764  5789999964  1111  00 0         01123333332     257999


Q ss_pred             ccCCCCCCeEEEEEEEeCCc---Cee--EEEEEEEEeecC----------CCCCeEEeCCCCceecCCCeEEEEeEeccC
Q psy15128         99 QGVQKEDAGFFVCSALSVAG---STT--VRAFLQVTSVED----------TPPPIVQVGPSNQTLPLHSVAFLPCQAVGS  163 (292)
Q Consensus        99 ~~~~~~d~g~Y~C~~~~~~~---~~~--~~~~l~v~~~~~----------~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~  163 (292)
                      .+++.+|+|.|.|.+.+..+   ...  ....|.|.....          ..++.+...+....+.+|++++|.|.+.+.
T Consensus       110 ~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~  189 (282)
T 1qok_A          110 SSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSS  189 (282)
T ss_dssp             CSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSC
T ss_pred             CcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCC
Confidence            99999999999999998765   111  223455543110          012233333444556677777777777666


Q ss_pred             CCCceEEEe
Q psy15128        164 PPPHIRWYK  172 (292)
Q Consensus       164 p~~~~~W~~  172 (292)
                      + +.+.|+|
T Consensus       190 ~-~~v~W~k  197 (282)
T 1qok_A          190 V-SYMHWFQ  197 (282)
T ss_dssp             C-SCCEEEE
T ss_pred             C-ceEEEEE
Confidence            6 6777776

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.79  E-value=4.4e-18  Score=128.72  Aligned_cols=134  Identities=14%  Similarity=0.255  Sum_probs=86.6

Q ss_pred             eCCCccEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEeec------------cCCCcceeEEeee-----cEEEEc
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVLMF------------PGNAYGHLHVTQE-----GTLRIQ   99 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~~~------------~~~~~~~~~~~~~-----~~l~i~   99 (292)
                      ..+....+.+|++++|.|.+.+.+  .+.+.|+|.  +......            ......+.....+     ..|.|.
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   85 (253)
T 3uzq_A            6 EQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLS   85 (253)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             ecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeC
Confidence            445567788999999999998743  678999983  2111100            0011123333322     249999


Q ss_pred             cCCCCCCeEEEEEEEeCCcCe-eEEEEEEEEee----------cCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCC--
Q psy15128        100 GVQKEDAGFFVCSALSVAGST-TVRAFLQVTSV----------EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP--  166 (292)
Q Consensus       100 ~~~~~d~g~Y~C~~~~~~~~~-~~~~~l~v~~~----------~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~--  166 (292)
                      +++.+|+|.|+|.+.+..+.. .....+.|...          ...+++.+...+....+.+|++++|.|.+.+.+.+  
T Consensus        86 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~  165 (253)
T 3uzq_A           86 SLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRYG  165 (253)
T ss_dssp             SCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEETT
T ss_pred             CCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccCC
Confidence            999999999999998854432 22344554421          11224455555666778899999999999887766  


Q ss_pred             --ceEEEeCC
Q psy15128        167 --HIRWYKNG  174 (292)
Q Consensus       167 --~~~W~~~~  174 (292)
                        .+.|++++
T Consensus       166 ~~~v~W~r~~  175 (253)
T 3uzq_A          166 NSFMHWYQQK  175 (253)
T ss_dssp             EECEEEEEEC
T ss_pred             CcEEEEEEEC
Confidence              89999853

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.79  E-value=4.9e-17  Score=123.26  Aligned_cols=133  Identities=16%  Similarity=0.249  Sum_probs=85.9

Q ss_pred             eCCCccEEecCCcEEEEEEEeee--CCCeeEEEECC--eEEeec-----------cCCCcceeEEee-----ecEEEEcc
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGS--PLPSVFWTQEG--SQVLMF-----------PGNAYGHLHVTQ-----EGTLRIQG  100 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~--~~~~~~-----------~~~~~~~~~~~~-----~~~l~i~~  100 (292)
                      ..+....+.+|++++|.|.+.+.  +.+.+.|+|..  ......           ......+.....     ...|.|.+
T Consensus        13 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   92 (257)
T 3gkz_A           13 QESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKS   92 (257)
T ss_dssp             EEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             ECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECC
Confidence            34456678999999999999884  46789999832  111100           011123333332     22799999


Q ss_pred             CCCCCCeEEEEEEEeCCcC----eeEEEEEEEEeec---------CCCCCeEEeCCCCceecCCCeEEEEeEeccCCCC-
Q psy15128        101 VQKEDAGFFVCSALSVAGS----TTVRAFLQVTSVE---------DTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP-  166 (292)
Q Consensus       101 ~~~~d~g~Y~C~~~~~~~~----~~~~~~l~v~~~~---------~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-  166 (292)
                      ++.+|+|.|+|.+.+..+.    ......|.|....         ..+.+.+...+....+.+|++++|.|.+.+.+.+ 
T Consensus        93 v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~  172 (257)
T 3gkz_A           93 VSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSS  172 (257)
T ss_dssp             CCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGG
T ss_pred             CChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccce
Confidence            9999999999999986211    1222344444210         0123455555666778889999999999887766 


Q ss_pred             ceEEEeC
Q psy15128        167 HIRWYKN  173 (292)
Q Consensus       167 ~~~W~~~  173 (292)
                      .+.|+++
T Consensus       173 ~v~W~k~  179 (257)
T 3gkz_A          173 HLYWYQQ  179 (257)
T ss_dssp             GEEEEEE
T ss_pred             EEEEEEE
Confidence            7999874

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.79  E-value=2.3e-18  Score=123.60  Aligned_cols=116  Identities=28%  Similarity=0.505  Sum_probs=95.1

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCC-eeEEEECCeEEeec
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMF   80 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~   80 (292)
                      |.+++.+|+|.|+|.+.+..+......+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+...
T Consensus        64 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~  143 (182)
T 1rhf_A           64 LKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP  143 (182)
T ss_dssp             ESSCCGGGCEEEEEEESSCTTCEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCS
T ss_pred             EeecCcccCeEEEEEEEcCCCcEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCC
Confidence            67999999999999999886665555599999999999888888889999999999999999988 99999999876311


Q ss_pred             cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCee-EEEEEEE
Q psy15128         81 PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT-VRAFLQV  128 (292)
Q Consensus        81 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~-~~~~l~v  128 (292)
                               ......|.|.++  +|+|.|+|.+.|..|... ..+.|.|
T Consensus       144 ---------~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          144 ---------APSPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             ---------EESSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ---------CCCceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence                     114568899988  589999999999887653 2444443

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.79  E-value=4.7e-18  Score=125.11  Aligned_cols=125  Identities=30%  Similarity=0.437  Sum_probs=95.3

Q ss_pred             cccC-CcCCCeeEEEEEEecccccccccEEEEEeCC-------CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEEC
Q psy15128          2 ITEV-KKSDEGKYQCYVQNMVGERETKPALLTVHAP-------PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE   73 (292)
Q Consensus         2 i~~v-~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~   73 (292)
                      |.++ +.+|+|.|+|.+.|..+..... +.|.|..+       |.+...+....+.+|+.+.|.|.+.+.|.+.+.|+++
T Consensus        67 i~~v~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~  145 (212)
T 2yd6_A           67 IQPLRTPRDEAIYECVASNNVGEISVS-TRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD  145 (212)
T ss_dssp             ECSCCTTTTCEEEEEEEEETTEEEEEE-EEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEET
T ss_pred             EeccCCCCCCeEEEEEEEcCCCcEEEE-EEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEEC
Confidence            6788 4999999999999988876555 88888753       5666777777888999999999999999999999999


Q ss_pred             CeEEeeccCCCcceeEEe---eecEEEEccCCCCCCeEEEEEEEeCCcCee-EEEEEEEE
Q psy15128         74 GSQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSALSVAGSTT-VRAFLQVT  129 (292)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~-~~~~l~v~  129 (292)
                      +..+.....  ..+....   ..+.|.|.+++.+|+|.|+|.|.|..|... ..+.+.+.
T Consensus       146 g~~l~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~  203 (212)
T 2yd6_A          146 FLPVDTSNN--NGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR  203 (212)
T ss_dssp             TEEC--------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CccccCcCC--CceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEE
Confidence            987643211  1122222   246899999999999999999999988654 33555554

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.78  E-value=5.6e-18  Score=120.01  Aligned_cols=82  Identities=18%  Similarity=0.308  Sum_probs=57.8

Q ss_pred             ccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCC-------CcceeEEe-eecEEEEccCCCCCCeEEEEEEEeC
Q psy15128         45 DQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGN-------AYGHLHVT-QEGTLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-------~~~~~~~~-~~~~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                      .+.+.+|++++|.|.+.+ |.+.+.|++++..+......       ...+..+. .++.|.|.+++.+|+|.|+|.+.+.
T Consensus         4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~   82 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (171)
T ss_dssp             EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence            456788999999998854 78899999988755322111       11233332 4578999999999999999999876


Q ss_pred             CcCeeEEEEEEEE
Q psy15128        117 AGSTTVRAFLQVT  129 (292)
Q Consensus       117 ~~~~~~~~~l~v~  129 (292)
                      .+  .....|.|.
T Consensus        83 ~~--~~~~~L~V~   93 (171)
T 1ccz_A           83 TD--TMKFFLYVL   93 (171)
T ss_dssp             CS--CEEEEEEEE
T ss_pred             CC--cEEEEEEEE
Confidence            55  344444443

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.78  E-value=2.3e-18  Score=124.35  Aligned_cols=123  Identities=27%  Similarity=0.485  Sum_probs=95.0

Q ss_pred             cccCCcCCCeeEEEEEEeccccc-ccccEEEEEeCCCcEEeCCC--ccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEe
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGER-ETKPALLTVHAPPSFVVRPQ--DQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVL   78 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~   78 (292)
                      |.+++.+|+|.|+|.+.+..+.. ....+.|.+..+|.+...+.  ...+.+|+.+.|.|.+.+.|.+.+.|++++..+.
T Consensus        61 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~  140 (189)
T 2v5t_A           61 ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE  140 (189)
T ss_dssp             ETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECC
T ss_pred             EeeCCHhHCcEEEEEEEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECc
Confidence            67899999999999999876432 22336777777777665544  3456679999999999999999999999998763


Q ss_pred             eccCCCcceeE-EeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128         79 MFPGNAYGHLH-VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus        79 ~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      ..     .... ......|.|.++..+|+|.|+|.+.|..|.......|.|.
T Consensus       141 ~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          141 EN-----EKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             CS-----SSEEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CC-----CcEEEecCCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence            11     1122 2234689999999999999999999999888877777765

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.78  E-value=1.5e-18  Score=127.52  Aligned_cols=161  Identities=17%  Similarity=0.224  Sum_probs=104.6

Q ss_pred             CCccEEecCCcEEEEEEEeeeCCCeeEEEECC--eEE--eec-----cCCCcceeEEe---eecEEEEccCCCCCCeEEE
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--SQV--LMF-----PGNAYGHLHVT---QEGTLRIQGVQKEDAGFFV  110 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~~~--~~~-----~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~  110 (292)
                      |....+.+|++++|.|.+.+.|.+.+.|+++.  ...  ...     ......+....   ....|.|.+++.+|+|.|+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence            66778899999999999998888899999843  211  110     00111233322   2338999999999999999


Q ss_pred             EEEEeCCcCee-EEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC-ceEEEeCCeeCCCC-Ccc--E
Q psy15128        111 CSALSVAGSTT-VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP-HIRWYKNGNSLPPE-DTR--I  184 (292)
Q Consensus       111 C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~~~W~~~~~~l~~~-~~~--~  184 (292)
                      |.+.+..+... ....+.|..  ...+|.+...+.......|+.++|.|.+.+. |.+ .+.|+++|.++... ...  .
T Consensus        87 C~~~~~~~~~~~~~~~l~V~~--~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~  164 (210)
T 1lk3_L           87 CQQSWNGPLTFGAGTKLELKR--ADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTD  164 (210)
T ss_dssp             EEECSSSSCEECCCEEEEECC--CCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECC
T ss_pred             EEEEcCCCceeCCCEEEEEcC--CCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCC
Confidence            99998755322 123444432  2234555554444445589999999999874 443 79999999988754 111  1


Q ss_pred             EEcCCC------cEEEEeeecCCCCCC
Q psy15128        185 NVSSSG------SLQIDVLRDDFRAEP  205 (292)
Q Consensus       185 ~~~~~~------~l~i~~~~~~d~g~~  205 (292)
                      ....++      .|.|..+..+|+|.|
T Consensus       165 ~~~~~~~~~~~s~L~i~~~~~~d~G~Y  191 (210)
T 1lk3_L          165 QDSKDSTYSMSSTLSLTKADYESHNLY  191 (210)
T ss_dssp             CCTTTCCEEEEEEEEEEHHHHHTCCEE
T ss_pred             ccCCCCCEEEEEEEEEChHHhccCCcE
Confidence            111222      478888877777743

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.78  E-value=1e-17  Score=119.64  Aligned_cols=74  Identities=16%  Similarity=0.267  Sum_probs=52.4

Q ss_pred             CccEEecCCcEEEEEEEee-eCCCeeEEEEC-CeEEeecc---------CCCcceeEE-eeecEEEEccCCCCCCeEEEE
Q psy15128         44 QDQKVGLNGIASFQCVAEG-SPLPSVFWTQE-GSQVLMFP---------GNAYGHLHV-TQEGTLRIQGVQKEDAGFFVC  111 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~-~~~~~~~~---------~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C  111 (292)
                      ..+.+.+|++++|.|.+.+ .+.+.|.|+|. +..+....         ..-..+..+ ..++.|.|.+++.+|+|.|+|
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C   86 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYM   86 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEE
Confidence            3567889999999998754 34679999994 43332111         111144555 356689999999999999999


Q ss_pred             EEEeCC
Q psy15128        112 SALSVA  117 (292)
Q Consensus       112 ~~~~~~  117 (292)
                      .+.+..
T Consensus        87 ~v~~~~   92 (180)
T 2dru_A           87 RMLHET   92 (180)
T ss_dssp             EEESSS
T ss_pred             EEEcCC
Confidence            997654

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.78  E-value=4.3e-18  Score=125.27  Aligned_cols=122  Identities=20%  Similarity=0.262  Sum_probs=93.8

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeC--------------------CCcEE-eCCCccEEecCCcEEEEEEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA--------------------PPSFV-VRPQDQKVGLNGIASFQCVA   60 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~--------------------~p~~~-~~~~~~~~~~g~~~~l~C~~   60 (292)
                      |.+++.+|+|.|+|.+.+..+..... +.|.|..                    .|.+. ..+....+.+|+.+.|.|.+
T Consensus        63 i~~v~~~D~G~Y~C~~~n~~~~~~~~-~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~  141 (212)
T 2r15_A           63 INEPTPNDKGKYVMELFDGKTGHQKT-VDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV  141 (212)
T ss_dssp             EESCCGGGCEEEEEEEECSSCEEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEE
T ss_pred             ECCCCcccCEEEEEEEecCCcceEEE-EEEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEE
Confidence            67899999999999999977765544 5665542                    33333 34556788999999999999


Q ss_pred             eeeCCCeeEEEECCeEEeeccCCCcceeEEee----ecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128         61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ----EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus        61 ~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      .+.|.+.+.|++++..+...  .   +.....    ...|.|.+++.+|.|.|+|.+.|..|.......|.|.
T Consensus       142 ~g~p~p~v~W~~~~~~~~~~--~---~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  209 (212)
T 2r15_A          142 WGDPPPEVSWLKNEKALAQT--D---HCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF  209 (212)
T ss_dssp             ECSSCCEEEEEETTEEECCC--S---SEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cCCCCceEEEEECCeECccC--C---CEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEE
Confidence            99999999999999876421  1   122221    2489999999999999999999999887777777665

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.78  E-value=2.6e-18  Score=129.62  Aligned_cols=164  Identities=13%  Similarity=0.117  Sum_probs=107.4

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      .+|.+...+. ..+.+|++++|.|.+.+ +.+.+.|+|++..+....... ..........|.|.+++.+|+|.|+|.+.
T Consensus         6 ~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   82 (257)
T 1b6u_A            6 RKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIG-EHHDGVSKANFSIGPMMQDLAGTYRCYGS   82 (257)
T ss_dssp             CCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEEC-BCCTTCEEEEEEECSCCTTTCEEEEEEEE
T ss_pred             CCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeee-eccCCCceEEEEeecCCcccCEEEEEeEe
Confidence            3555555554 67889999999999864 567899999886432110000 00011235689999999999999999998


Q ss_pred             eCCc---Ce--eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEc--
Q psy15128        115 SVAG---ST--TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVS--  187 (292)
Q Consensus       115 ~~~~---~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~--  187 (292)
                      +...   ..  +....|.|.  ...+.|.+...+. ..+.+|+.++|.|.+.+. .+.+.|+|+|..+..........  
T Consensus        83 ~~~~~~~~s~~S~~~~L~V~--~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~  158 (257)
T 1b6u_A           83 VTHSPYQLSAPSDPLDIVIT--GLYEKPSLSAQPG-PTVLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGPKVNG  158 (257)
T ss_dssp             CSSCTTSCCCCCCCEEEEEE--CSSCCCEEECSSC-TTCBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBCCSSS
T ss_pred             ccCCCccccccCCCEEEecc--cCCCCcceEccCC-CccCCCCEEEEEEeCCCC-CcEEEEEECCcccCcccccccccCC
Confidence            6421   11  233444443  3345666666554 457899999999998765 46899999998765422111111  


Q ss_pred             -CCCcEEEEeeecCCCCCCcc
Q psy15128        188 -SSGSLQIDVLRDDFRAEPKD  207 (292)
Q Consensus       188 -~~~~l~i~~~~~~d~g~~~~  207 (292)
                       ..+.|.|.+++  |+|.|..
T Consensus       159 ~~~~~l~I~~v~--D~G~Y~C  177 (257)
T 1b6u_A          159 TFQADFPLGPAT--HGGTYRC  177 (257)
T ss_dssp             CCBEEEEEEECC--SCEEEEE
T ss_pred             ceeEEEEecccc--cCEEEEE
Confidence             14578999887  8885533

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.78  E-value=5.9e-18  Score=123.48  Aligned_cols=165  Identities=17%  Similarity=0.324  Sum_probs=104.1

Q ss_pred             ccEEecCCcEEEEEEEe----eeCCCeeEEEECCeEEeeccCCC-------cceeE--EeeecEEEEccCCCCCCeEEEE
Q psy15128         45 DQKVGLNGIASFQCVAE----GSPLPSVFWTQEGSQVLMFPGNA-------YGHLH--VTQEGTLRIQGVQKEDAGFFVC  111 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~----~~~~~~v~W~~~~~~~~~~~~~~-------~~~~~--~~~~~~l~i~~~~~~d~g~Y~C  111 (292)
                      .+.+.+|++++|.|.+.    +.|.+.+.|++++..+.......       ..+..  ...+..|.|.+++.+|+|.|+|
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C   82 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence            35678899999999985    34667899999988763221110       11121  1234589999999999999999


Q ss_pred             EEEeCCcCeeE---EEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEec-cCCCCceEEEeCCeeCCCCCccEEEc
Q psy15128        112 SALSVAGSTTV---RAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPPEDTRINVS  187 (292)
Q Consensus       112 ~~~~~~~~~~~---~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~~~W~~~~~~l~~~~~~~~~~  187 (292)
                      .+.+..+....   ...+.+.+....+.|.+...    ....|+.+.|.|.+. ++|.|.+.|+++|..+......+...
T Consensus        83 ~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~----~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~  158 (201)
T 1dr9_A           83 VVLKYEKDAFKREHLAEVTLSVKADFPTPSISDF----EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQD  158 (201)
T ss_dssp             EEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEE----ECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEEC
T ss_pred             EEEcCCCCccccccccEEEEEEcCCCCCCceEec----cCCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEec
Confidence            99997655432   33344443333333443321    123588999999994 88999999999999887643333333


Q ss_pred             CC-CcEEEEeeecCCCCCCcceEEeCCCceEEEeeCC
Q psy15128        188 SS-GSLQIDVLRDDFRAEPKDTRVASGETALLECGPP  223 (292)
Q Consensus       188 ~~-~~l~i~~~~~~d~g~~~~~~~~~g~~~~l~C~~~  223 (292)
                      .+ +.+.+...          ..+...+.-.++|.|.
T Consensus       159 ~~~~~~~~~~~----------~~v~~~d~g~Y~C~a~  185 (201)
T 1dr9_A          159 PETELYAVSSK----------LDFNMTTNHSFMCLIK  185 (201)
T ss_dssp             TTTCCEEEEEE----------EEEETTSCEEEEEEEE
T ss_pred             CCCcEEEEEEE----------EEEEecCCCEEEEEEe
Confidence            33 33333211          1222334457888873

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.78  E-value=6.8e-19  Score=126.58  Aligned_cols=131  Identities=19%  Similarity=0.189  Sum_probs=95.3

Q ss_pred             CCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCCCC--------
Q psy15128        134 TPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEP--------  205 (292)
Q Consensus       134 ~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g~~--------  205 (292)
                      .++|.+...+.. .+.+|++++|.|.+.+ +.+.+.|+|++...        ....+.|.|.++..+|+|.|        
T Consensus         6 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~--------~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   75 (184)
T 2gi7_A            6 LPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR--------YQDQAVLFIPAMKRSLAGRYRCSYQNGS   75 (184)
T ss_dssp             BCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCC--------EESSSEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccc--------cCcccEEEECcCChhhCceEEEEEEcCC
Confidence            456677666664 7889999999999977 67899999998651        12445677777777777721        


Q ss_pred             -------------------------cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCcccccc
Q psy15128        206 -------------------------KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRR  260 (292)
Q Consensus       206 -------------------------~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~  260 (292)
                                               +...+.+|+.++|.|.+ .+.| +.+.|+++|..+....  ..         ...
T Consensus        76 g~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~-~~~~-~~~~w~k~g~~~~~~~--~~---------~~~  142 (184)
T 2gi7_A           76 LWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQT-RYGF-DQFALYKEGDPAPYKN--PE---------RWY  142 (184)
T ss_dssp             EEBCCCCCEEEEEESSSCCCEEEEECCCSSCCTTCEEEEEEC-SSCC-CEEEEEECCCCTTSCC--CC---------EEE
T ss_pred             CccCCCCCEEEEecCcCCCCEEEeCCCceecCCCcEEEEEEc-CCCC-cEEEEEECCCcCccee--cC---------CCc
Confidence                                     11234579999999997 5554 6999999998774211  10         112


Q ss_pred             ccccccccccccccceeEEEEeecccc
Q psy15128        261 SRSIFGSVLGALSDDQWKLIAKNIRNQ  287 (292)
Q Consensus       261 ~~~l~i~~~~~~~~g~y~C~a~n~~g~  287 (292)
                      ...|.|..+..+|+|.|+|.|.|..+.
T Consensus       143 ~~~L~i~~v~~~D~G~Y~C~a~n~~~~  169 (184)
T 2gi7_A          143 RASFPIITVTAAHSGTYRCYSFSSRDP  169 (184)
T ss_dssp             EESSSEEEETTCCSEEEEEEEECTTST
T ss_pred             eEEEEEccCCccCCeEEEEEEEeCCCC
Confidence            236889999999999999999998754

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.78  E-value=4.6e-18  Score=126.08  Aligned_cols=125  Identities=22%  Similarity=0.352  Sum_probs=74.0

Q ss_pred             ccEEecCCcEEEEEEEeeeCCC---eeEEEECCeEEeeccC-----------CCcce----------eEEeeecEEEEcc
Q psy15128         45 DQKVGLNGIASFQCVAEGSPLP---SVFWTQEGSQVLMFPG-----------NAYGH----------LHVTQEGTLRIQG  100 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~~---~v~W~~~~~~~~~~~~-----------~~~~~----------~~~~~~~~l~i~~  100 (292)
                      .+.+..|++++|.|.+.+.+.+   .|.|+|++..+.....           ....+          .....+..|.|.+
T Consensus        10 ~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   89 (225)
T 4fmk_A           10 EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG   89 (225)
T ss_dssp             EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred             EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence            4567889999999999876655   4899997654321100           00000          0112245799999


Q ss_pred             CCCCCCeEEEEEEEeCCcCeeEEE-EEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEe-ccCCCCceEEEeCC
Q psy15128        101 VQKEDAGFFVCSALSVAGSTTVRA-FLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA-VGSPPPHIRWYKNG  174 (292)
Q Consensus       101 ~~~~d~g~Y~C~~~~~~~~~~~~~-~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~~~W~~~~  174 (292)
                      ++.+|+|.|+|.+.+..+...... .+.+.     .++.....+.......++.+.+.|.+ .+.|++.+.|++++
T Consensus        90 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~  160 (225)
T 4fmk_A           90 LRVEDEGNYTCEFATFPNGTRRGVTWLRVI-----AQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSL  160 (225)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEE-----BCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSS
T ss_pred             CCHHHCcceEEEEEeCCCcceeeeeeeeee-----cCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECC
Confidence            999999999999988655433322 22222     12333333333344455566666654 34456667776654

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.78  E-value=4.9e-18  Score=125.42  Aligned_cols=125  Identities=26%  Similarity=0.487  Sum_probs=97.5

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeC-CCcEEeCCCccEEecCCcEEEEEEE-eeeCCCeeEEEECCeEEee
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA-PPSFVVRPQDQKVGLNGIASFQCVA-EGSPLPSVFWTQEGSQVLM   79 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~   79 (292)
                      |.+++.+|+|.|+|.+.+..+......+.|.|.. +|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..
T Consensus        73 i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~  152 (217)
T 2vr9_A           73 MQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDD  152 (217)
T ss_dssp             CBSSSCBCCEEEEEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECC
T ss_pred             eccCCcccCceEEEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCc
Confidence            6789999999999999998877655447777765 5566666777788999999999998 8899999999999987742


Q ss_pred             ccC---CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEE
Q psy15128         80 FPG---NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL  126 (292)
Q Consensus        80 ~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l  126 (292)
                      ...   ....+......+.|.|.+++.+|.|.|+|.+.|..|.......+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~  202 (217)
T 2vr9_A          153 LKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAK  202 (217)
T ss_dssp             CCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEE
T ss_pred             ccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEE
Confidence            211   11223334456689999999999999999999998876655443

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.77  E-value=5.1e-19  Score=130.36  Aligned_cols=123  Identities=25%  Similarity=0.318  Sum_probs=95.1

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEE-eeeCCCeeEEEECCeEEeec
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA-EGSPLPSVFWTQEGSQVLMF   80 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~   80 (292)
                      |.+++.+|+|.|+|.+.+..+..... +.|.|..+|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++......
T Consensus        88 i~~v~~~D~G~Y~C~~~~~~~~~~~~-~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~  166 (214)
T 3jz7_A           88 VTNLQLSDIGTYQCKVKKAPGVANKK-FLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMP  166 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEE-EEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCC
T ss_pred             EccCChhhCeEEEEEEEeCCCccccE-EEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccC
Confidence            78999999999999999987766555 89999988876555444557889999999999 78899999999965432211


Q ss_pred             cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128         81 PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus        81 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      .    ........+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus       167 ~----~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  211 (214)
T 3jz7_A          167 T----PWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV  211 (214)
T ss_dssp             G----GGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred             c----cceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence            1    11112234589999999999999999999998887766666553

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.77  E-value=3.1e-17  Score=123.19  Aligned_cols=135  Identities=17%  Similarity=0.171  Sum_probs=84.0

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--e--EEeecc-----CCCcceeEEe---eecEEEEccCCCCCC
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--S--QVLMFP-----GNAYGHLHVT---QEGTLRIQGVQKEDA  106 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~--~~~~~~-----~~~~~~~~~~---~~~~l~i~~~~~~d~  106 (292)
                      +...|....+.+|++++|.|.+.+.|.+.+.|+|+.  .  ......     .....++...   ....|.|.+++.+|+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   83 (242)
T 2znx_A            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (242)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHC
Confidence            445566778999999999999988888899999853  1  111110     0112233322   234799999999999


Q ss_pred             eEEEEEEEeCCcCe-eEEEEEEEEeecC--------CCCCeEEeCCCCceecCCCeEEEEeEeccCC--CCceEEEeC
Q psy15128        107 GFFVCSALSVAGST-TVRAFLQVTSVED--------TPPPIVQVGPSNQTLPLHSVAFLPCQAVGSP--PPHIRWYKN  173 (292)
Q Consensus       107 g~Y~C~~~~~~~~~-~~~~~l~v~~~~~--------~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p--~~~~~W~~~  173 (292)
                      |.|.|.+.+..+.. .....|.|.....        ..++.....+....+.+|++++|.|.+.+.|  .+.+.|+++
T Consensus        84 G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~  161 (242)
T 2znx_A           84 GMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRK  161 (242)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             EEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEee
Confidence            99999998764321 1223455432110        0011222223334578888888888887765  467888875

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.77  E-value=7.1e-18  Score=127.83  Aligned_cols=130  Identities=16%  Similarity=0.247  Sum_probs=75.6

Q ss_pred             CCccEEecCCcEEEEEEEeee--CCCeeEEEECC--e--EEeeccC-----CCcceeEEee---ecEEEEccCCCCCCeE
Q psy15128         43 PQDQKVGLNGIASFQCVAEGS--PLPSVFWTQEG--S--QVLMFPG-----NAYGHLHVTQ---EGTLRIQGVQKEDAGF  108 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~--~--~~~~~~~-----~~~~~~~~~~---~~~l~i~~~~~~d~g~  108 (292)
                      +....+.+|++++|.|.+.+.  +.+.+.|+|..  .  .......     ....++....   ...|.|.+++.+|+|.
T Consensus         9 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~   88 (256)
T 3ux9_B            9 PPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEAD   88 (256)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEE
Confidence            445678899999999999876  67899999842  1  1111100     0112332222   2379999999999999


Q ss_pred             EEEEEEeCCcCe---eEEEEEEEEeecCCC----------------CCeEEeCCCCceecCCCeEEEEeEeccCC--CCc
Q psy15128        109 FVCSALSVAGST---TVRAFLQVTSVEDTP----------------PPIVQVGPSNQTLPLHSVAFLPCQAVGSP--PPH  167 (292)
Q Consensus       109 Y~C~~~~~~~~~---~~~~~l~v~~~~~~~----------------~~~~~~~~~~~~~~~g~~v~l~C~~~~~p--~~~  167 (292)
                      |+|.+.+..+..   .....|.|.......                .+.+. .+....+.+|++++|.|.+.+.+  .+.
T Consensus        89 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~G~~v~L~C~~~~~~~~~~~  167 (256)
T 3ux9_B           89 YYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLV-ESGGGLVQPGGSLRLSCAASGFTFSSYA  167 (256)
T ss_dssp             EEEEEEETTTTEEEECCCEEEEEC----------------------CCEEE-EECCEEECTTCCEEEEEEEESSCGGGSE
T ss_pred             EEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEE-cCCCeEEcCCCeEEEEEEEeCCcccccE
Confidence            999999864322   122344443211000                11122 22333466677777777776554  456


Q ss_pred             eEEEeC
Q psy15128        168 IRWYKN  173 (292)
Q Consensus       168 ~~W~~~  173 (292)
                      +.|+++
T Consensus       168 v~W~r~  173 (256)
T 3ux9_B          168 MSWVRQ  173 (256)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            777764

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.77  E-value=2.3e-18  Score=126.79  Aligned_cols=129  Identities=18%  Similarity=0.177  Sum_probs=88.7

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeC--CCcEEeCCCc-cEEecCCcEEEEEEEeeeC--CCeeEEEECCeE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA--PPSFVVRPQD-QKVGLNGIASFQCVAEGSP--LPSVFWTQEGSQ   76 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~-~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~~   76 (292)
                      |.+++.+|+|.|+|.+.+..+...+..+.|.|..  +|.+...+.. ..+.+|+.++|.|.+.+.|  .+.+.|++++..
T Consensus        68 I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~  147 (213)
T 2x1w_L           68 IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSK  147 (213)
T ss_dssp             EEGGGTTTCSEEEEEEC----CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSS
T ss_pred             EccCChhcCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCc
Confidence            6789999999999999985544444437777754  3344444433 4889999999999999854  347999998865


Q ss_pred             Eeecc----CCCcce--eEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEe
Q psy15128         77 VLMFP----GNAYGH--LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS  130 (292)
Q Consensus        77 ~~~~~----~~~~~~--~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~  130 (292)
                      +....    ......  ......+.|.|.+++.+|+|.|+|.+.|..|.....+.|.|..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~  207 (213)
T 2x1w_L          148 HQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE  207 (213)
T ss_dssp             CCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             cceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEec
Confidence            32100    000000  0022345799999999999999999999988887777777753

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.77  E-value=1.7e-18  Score=129.47  Aligned_cols=136  Identities=18%  Similarity=0.274  Sum_probs=85.2

Q ss_pred             CCccEEecCCcEEEEEEEeeeC-CC-eeEEEECCe--EE--eecc-----CCCcceeEEe---eecEEEEccCCCCCCeE
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSP-LP-SVFWTQEGS--QV--LMFP-----GNAYGHLHVT---QEGTLRIQGVQKEDAGF  108 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~-~~-~v~W~~~~~--~~--~~~~-----~~~~~~~~~~---~~~~l~i~~~~~~d~g~  108 (292)
                      +....+.+|++++|.|.+.+.+ .+ .+.|+|+..  ..  ....     .....+....   ....|.|.+++.+|+|.
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  105 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD  105 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence            6677889999999999998754 34 699998632  11  1100     0011223222   23489999999999999


Q ss_pred             EEEEEEeCCcC---eeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CC-CceEEEeCCeeCCC
Q psy15128        109 FVCSALSVAGS---TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PP-PHIRWYKNGNSLPP  179 (292)
Q Consensus       109 Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~~~W~~~~~~l~~  179 (292)
                      |+|.+.+..+.   ......+.|.... ..+|.+...+.......|+.++|.|.+.+. |+ +.+.|+++|..+..
T Consensus       106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~-~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~  180 (234)
T 2j6e_L          106 YYCATWDDSLSAVIFGGGTKLTVLGQP-KAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKA  180 (234)
T ss_dssp             EEEEEEETTTTEEEECCCBCCCBCCCC-CCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCS
T ss_pred             EEEEEEcCCcceeEecCCEEEEEecCC-CCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCC
Confidence            99999987662   1112334432111 123333332233334468899999999876 33 37999999887654

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.77  E-value=5.5e-18  Score=125.28  Aligned_cols=117  Identities=23%  Similarity=0.323  Sum_probs=94.6

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCC---------------CcEEeCCCccEEecCCcEEEEEEEeeeCCC
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAP---------------PSFVVRPQDQKVGLNGIASFQCVAEGSPLP   66 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~---------------p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~   66 (292)
                      |.+++.+|+|.|+|.+.+..+......+.|.|...               |.+...+....+.+|+.+.|.|.+.+.|.+
T Consensus        69 i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~  148 (218)
T 3k0w_A           69 FNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIP  148 (218)
T ss_dssp             ETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCC
T ss_pred             EccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCC
Confidence            67899999999999999987765555588888765               566677777889999999999999999999


Q ss_pred             eeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC-eeEEEEEEEE
Q psy15128         67 SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS-TTVRAFLQVT  129 (292)
Q Consensus        67 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~-~~~~~~l~v~  129 (292)
                      .+.|++++..+..           .....|.|.+++.+|.|.|+|.+.|..|. ....+.|.|.
T Consensus       149 ~v~W~~~~~~~~~-----------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  201 (218)
T 3k0w_A          149 HYQWFKNELPLTH-----------ETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID  201 (218)
T ss_dssp             EEEEEETTEECTT-----------CCSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEC
T ss_pred             eEEEEECCEECCC-----------CCCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEe
Confidence            9999999886531           12357999999999999999999997665 3344555554

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.77  E-value=1e-18  Score=128.89  Aligned_cols=138  Identities=16%  Similarity=0.137  Sum_probs=98.6

Q ss_pred             CCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEE-EcCCC--cEEEEeeecCCCCCC-----
Q psy15128        134 TPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRIN-VSSSG--SLQIDVLRDDFRAEP-----  205 (292)
Q Consensus       134 ~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~-~~~~~--~l~i~~~~~~d~g~~-----  205 (292)
                      .++|.+...|. ..+.+|+.++|.|.+.+ +.+.+.|+|+|..+........ ....+  .|.|.++..+|+|.|     
T Consensus         7 ~~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   84 (218)
T 1uct_A            7 FPMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYR   84 (218)
T ss_dssp             SCCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEE
Confidence            45677777766 46889999999999976 5788999999876542111110 11234  788888888888811     


Q ss_pred             ----------------------------cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccc
Q psy15128        206 ----------------------------KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFD  257 (292)
Q Consensus       206 ----------------------------~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~  257 (292)
                                                  +...+.+|+.++|.|.+ .+.|.+.+.|+|+|..+..   ... ..      
T Consensus        85 n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~~-~~~~~~~~~W~k~g~~~~~---~~~-~~------  153 (218)
T 1uct_A           85 IGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSS-AHIPFDRFSLAKEGELSLP---QHQ-SG------  153 (218)
T ss_dssp             ETTTEEEECCCEEEEEECSSCCCEEEESSCSEECTTCCCEEEEEC-SSSCCSEEEEEETTCSSCC---SEE-EC------
T ss_pred             cCCCceeecCCEEEEEcCcccCCEEEeCCCCccCCCCCEEEEEeC-CCCCCCEEEEEECCCcccc---ccc-CC------
Confidence                                        12356789999999975 6677889999999987642   111 11      


Q ss_pred             cccccccccccccccccceeEEEEeecc
Q psy15128        258 SRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       258 ~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                       .....|.|..++.+|+|.|+|.|.|..
T Consensus       154 -~~~~~L~I~~v~~~D~G~Y~C~a~n~~  180 (218)
T 1uct_A          154 -EHPANFSLGPVDLNVSGIYRCYGWYNR  180 (218)
T ss_dssp             -SSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred             -CccCEEEEccCCcccCEEEEEEEEcCC
Confidence             122368899999999999999999864

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.76  E-value=9e-18  Score=122.62  Aligned_cols=114  Identities=19%  Similarity=0.297  Sum_probs=87.2

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeee-CCCeeEEEECCeEEeec
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGS-PLPSVFWTQEGSQVLMF   80 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~~   80 (292)
                      |.+++.+|+|.|+|.+.+.  .. ...+.|.|..+|.+...+. ..+.+|+.++|.|.+.+. |.+.+.|++++..+.. 
T Consensus        58 i~~v~~~D~G~Y~C~a~n~--~~-s~~~~l~V~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~-  132 (204)
T 3sgj_C           58 IDAATVDDSGEYRCQTQLS--TL-SDPVQLEVHIGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY-  132 (204)
T ss_dssp             ESSCCGGGCEEEEEEETTS--BC-CCCEEEEEECSSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE-
T ss_pred             EecccccCCEEEEEEeCCC--cc-cccEEEEEecCceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec-
Confidence            7889999999999999863  22 2338899988776655554 678899999999999665 5678999999987631 


Q ss_pred             cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc-CeeEEEEEEEE
Q psy15128         81 PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG-STTVRAFLQVT  129 (292)
Q Consensus        81 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~-~~~~~~~l~v~  129 (292)
                               ......|.|.+++.+|+|.|+|.+.|..+ ..+..+.|.|.
T Consensus       133 ---------~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~  173 (204)
T 3sgj_C          133 ---------FHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITIT  173 (204)
T ss_dssp             ---------EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             ---------ccCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEe
Confidence                     22356899999999999999999999433 33334455554

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.76  E-value=2.9e-18  Score=121.72  Aligned_cols=143  Identities=15%  Similarity=0.222  Sum_probs=105.0

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeeeC-CCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGSP-LPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      |.+...+....+.+|+.+.|.|.+.+.| .+.+.|++++..+..            ....+.+.+++.+|+|.|+|.+.+
T Consensus         5 p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~------------~~~~~~~~~~~~~d~G~Y~C~~~~   72 (170)
T 3ry4_A            5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPT------------HTQPSYRFKANNNDSGEYTCQTGQ   72 (170)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTT------------CCSSEEEEECCGGGCEEEEEEETT
T ss_pred             CEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEccc------------CccceEEEecccccCeEEEEEEeC
Confidence            4555667677899999999999998876 568999999987631            123466778999999999999986


Q ss_pred             CCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEec-cCCCCceEEEeCCeeCCCCCccEEEcCCCcEEE
Q psy15128        116 VAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI  194 (292)
Q Consensus       116 ~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i  194 (292)
                      .....  ...+.|..     ++.... +....+.+|+.+.|.|.+. +.|.+.+.|++++..+..      ....+.|.|
T Consensus        73 ~~~s~--~~~l~v~~-----~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~------~~~~~~L~i  138 (170)
T 3ry4_A           73 TSLSD--PVHLTVLF-----EWLVLQ-TPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF------SHLDPTFSI  138 (170)
T ss_dssp             SBCCC--CEEEEEEC-----CSEEEE-CSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE------ESSCCEEEE
T ss_pred             CCceE--eEEEEEEC-----CceEec-CCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccc------cCCCCeEEE
Confidence            54332  34455542     333333 3445688999999999994 556689999999887642      224567999


Q ss_pred             EeeecCCCCCC
Q psy15128        195 DVLRDDFRAEP  205 (292)
Q Consensus       195 ~~~~~~d~g~~  205 (292)
                      .++..+|+|.|
T Consensus       139 ~~v~~~d~G~Y  149 (170)
T 3ry4_A          139 PQANHSHSGDY  149 (170)
T ss_dssp             SSCCGGGCEEE
T ss_pred             EeccccCCEEE
Confidence            99998888844

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.76  E-value=7.7e-17  Score=121.47  Aligned_cols=136  Identities=18%  Similarity=0.229  Sum_probs=84.6

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeeeC-----CCeeEEEECC--e--EEeecc-----CCCcceeEEee---ecEEEEccC
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGSP-----LPSVFWTQEG--S--QVLMFP-----GNAYGHLHVTQ---EGTLRIQGV  101 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~~-----~~~v~W~~~~--~--~~~~~~-----~~~~~~~~~~~---~~~l~i~~~  101 (292)
                      +...|....+.+|++++|.|.+.+.+     .+.+.|+|..  .  ......     .....++....   ...|.|.++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   83 (247)
T 1svz_A            4 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV   83 (247)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCC
Confidence            34456677889999999999998876     6799999853  2  111110     00112333222   237999999


Q ss_pred             CCCCCeEEEEEEEeCCcCe-eEEEEEEEEeecC--------CCCCeEEeCCCCceecCCCeEEEEeEeccCC--CCceEE
Q psy15128        102 QKEDAGFFVCSALSVAGST-TVRAFLQVTSVED--------TPPPIVQVGPSNQTLPLHSVAFLPCQAVGSP--PPHIRW  170 (292)
Q Consensus       102 ~~~d~g~Y~C~~~~~~~~~-~~~~~l~v~~~~~--------~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p--~~~~~W  170 (292)
                      +.+|+|.|+|.+.+..+.. .....|.|.....        ..++.....+....+.+|++++|.|.+.+.+  .+.+.|
T Consensus        84 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W  163 (247)
T 1svz_A           84 EAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHW  163 (247)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEE
T ss_pred             CHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEE
Confidence            9999999999998764431 1224455543110        0022222233334588899999999987764  457899


Q ss_pred             EeCC
Q psy15128        171 YKNG  174 (292)
Q Consensus       171 ~~~~  174 (292)
                      ++++
T Consensus       164 ~k~~  167 (247)
T 1svz_A          164 VKQA  167 (247)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9864

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.76  E-value=1.2e-17  Score=121.39  Aligned_cols=125  Identities=21%  Similarity=0.327  Sum_probs=95.1

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeC---CCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEe
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVR---PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVL   78 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~---~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~   78 (292)
                      |.+++.+|+|.|+|.+.+..+..... +.|.|..+|.+...   +....+.+|+.+.|.|.+.+.|.+.+.|++++..+.
T Consensus        67 i~~~~~~d~G~Y~C~~~n~~~~~~~~-~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~  145 (197)
T 3lcy_A           67 VMTEEQEDEGVYTCIATNEVGEVETS-SKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQ  145 (197)
T ss_dssp             EECCSGGGCEEEEEEEECSSCEEEEE-EEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECC
T ss_pred             EecCCccCCEEEEEEEECCCCceeEE-EEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECC
Confidence            67899999999999999887776655 78888776655432   244567889999999999999999999999998763


Q ss_pred             eccCCCcceeEEeeecEEEEccCCC-CCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128         79 MFPGNAYGHLHVTQEGTLRIQGVQK-EDAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus        79 ~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      .  ..............|.|.++.. +|.|.|+|.+.|..|.....+.|.|.
T Consensus       146 ~--~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  195 (197)
T 3lcy_A          146 N--SENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ  195 (197)
T ss_dssp             C--CSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             C--CCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEe
Confidence            1  1111111111225899999995 89999999999999888777777664

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.76  E-value=7.5e-18  Score=123.92  Aligned_cols=128  Identities=23%  Similarity=0.380  Sum_probs=94.3

Q ss_pred             cccCCcCCCeeEEEEEEeccccc-ccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEE-EeeeCCCeeEEEECCe-EEe
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGER-ETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCV-AEGSPLPSVFWTQEGS-QVL   78 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~-~~~~~~~~v~W~~~~~-~~~   78 (292)
                      |.+++.+|+|.|+|.+.+..+.. ....+.|.|..+|.+...+....+.+|+.+.|.|. +.+.|.+.+.|++++. .+.
T Consensus        69 i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~  148 (212)
T 1f97_A           69 FSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLT  148 (212)
T ss_dssp             ESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC
T ss_pred             EcccCcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCccccc
Confidence            67899999999999999976622 23338888888887766566678899999999999 6888999999999998 654


Q ss_pred             eccCCC----cceeEE-eeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128         79 MFPGNA----YGHLHV-TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus        79 ~~~~~~----~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      ......    ...... ...+.|.|.+++.+|.|.|+|.+.|..|....+..+.+.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~  204 (212)
T 1f97_A          149 ADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD  204 (212)
T ss_dssp             -----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEE
T ss_pred             ccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEE
Confidence            221110    011111 235689999999999999999999998887444334333

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.76  E-value=1.2e-17  Score=122.85  Aligned_cols=162  Identities=15%  Similarity=0.170  Sum_probs=102.1

Q ss_pred             CCccEEecCCcEEEEEEEeeeC---CCeeEEEECC--eEEe--ec-----cCCCcceeEEe---eecEEEEccCCCCCCe
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSP---LPSVFWTQEG--SQVL--MF-----PGNAYGHLHVT---QEGTLRIQGVQKEDAG  107 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~---~~~v~W~~~~--~~~~--~~-----~~~~~~~~~~~---~~~~l~i~~~~~~d~g  107 (292)
                      |....+.+|++++|.|.+.+.|   .+.+.|+|++  ....  ..     ......+....   ....|.|.+++.+|+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   86 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA   86 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence            6677889999999999998876   4689999863  2221  10     00111233222   2348999999999999


Q ss_pred             EEEEEEEeCCcCe-eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCC-CC-ceEEEeCCeeCCCCCc--
Q psy15128        108 FFVCSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSP-PP-HIRWYKNGNSLPPEDT--  182 (292)
Q Consensus       108 ~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p-~~-~~~W~~~~~~l~~~~~--  182 (292)
                      .|+|.+.+..+.. .....+.|... ...+|.+...+.......|+.++|.|.+.+.+ ++ .+.|+++|.++.....  
T Consensus        87 ~Y~C~~~~~~~~~~~~~~~l~V~~~-~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~  165 (212)
T 1q0x_L           87 IYFCALWSNNKLVFGGGTKLTVLGQ-PKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETT  165 (212)
T ss_dssp             EEEEEEECSSCEEECCCEEEEECCS-CCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEC
T ss_pred             EEEEEEecCchhhcCCCeEEEEecC-CCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecC
Confidence            9999999865421 12234444321 11355555544444455799999999998754 33 7999999998865321  


Q ss_pred             cEEEcCCC------cEEEEeeecCCCCCC
Q psy15128        183 RINVSSSG------SLQIDVLRDDFRAEP  205 (292)
Q Consensus       183 ~~~~~~~~------~l~i~~~~~~d~g~~  205 (292)
                      ......++      .|.|..+..+|.|.|
T Consensus       166 ~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y  194 (212)
T 1q0x_L          166 QPSKQSNNKYMASSYLTLTARAWERHSSY  194 (212)
T ss_dssp             CCEECTTSCEEEEEEEEEEHHHHTTCCEE
T ss_pred             CceeCCCCCEEEEEEEEEcHHHccCCCcE
Confidence            11222333      366666666676643

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.75  E-value=7e-17  Score=121.69  Aligned_cols=162  Identities=18%  Similarity=0.259  Sum_probs=103.6

Q ss_pred             CccEEecCCcEEEEEEEeeeC--CCeeEEEECC--eEE--ee-c---------cCCCcceeEEee-----ecEEEEccCC
Q psy15128         44 QDQKVGLNGIASFQCVAEGSP--LPSVFWTQEG--SQV--LM-F---------PGNAYGHLHVTQ-----EGTLRIQGVQ  102 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~--~~-~---------~~~~~~~~~~~~-----~~~l~i~~~~  102 (292)
                      ....+.+|++++|.|.+.+.|  .+.+.|+|+.  ...  .. .         ......+.....     ...|.|.+++
T Consensus        10 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   89 (247)
T 2ghw_B           10 GGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   89 (247)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCC
Confidence            456788999999999998876  5789999842  111  10 0         011123333332     2479999999


Q ss_pred             CCCCeEEEEEEEeCCcCe--eEEEEEEEEeec----------CCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEE
Q psy15128        103 KEDAGFFVCSALSVAGST--TVRAFLQVTSVE----------DTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRW  170 (292)
Q Consensus       103 ~~d~g~Y~C~~~~~~~~~--~~~~~l~v~~~~----------~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W  170 (292)
                      .+|+|.|+|.+.+..+..  .....|.|....          ...++.+...+....+.+|++++|.|.+.+.|.+.+.|
T Consensus        90 ~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W  169 (247)
T 2ghw_B           90 AEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLAW  169 (247)
T ss_dssp             GGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEEE
T ss_pred             HHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEEE
Confidence            999999999999862221  122344443210          01234444455666788999999999999998889999


Q ss_pred             Ee--CCeeCC-----------CCCccEEEcCC---CcEEEEeeecCCCCCC
Q psy15128        171 YK--NGNSLP-----------PEDTRINVSSS---GSLQIDVLRDDFRAEP  205 (292)
Q Consensus       171 ~~--~~~~l~-----------~~~~~~~~~~~---~~l~i~~~~~~d~g~~  205 (292)
                      +|  ++..+.           ....++.....   .+|.|.++..+|+|.|
T Consensus       170 ~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y  220 (247)
T 2ghw_B          170 YQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVY  220 (247)
T ss_dssp             EEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEE
T ss_pred             EEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEE
Confidence            99  554431           11123333222   2588888888888843

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.75  E-value=1.2e-17  Score=123.08  Aligned_cols=140  Identities=16%  Similarity=0.276  Sum_probs=95.3

Q ss_pred             cEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC---eE--Eeecc----CCCcceeEEe---eecEEEEccCCCCC
Q psy15128         38 SFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG---SQ--VLMFP----GNAYGHLHVT---QEGTLRIQGVQKED  105 (292)
Q Consensus        38 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~---~~--~~~~~----~~~~~~~~~~---~~~~l~i~~~~~~d  105 (292)
                      .+...+....+.+|+.++|.|.+.+.|.+.+.|+|..   ..  +....    .....++...   ....|.|.+++.+|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (213)
T 3r06_A            3 QMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESED   82 (213)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCccc
Confidence            4445566778999999999999998888899999832   11  11100    0111222222   23489999999999


Q ss_pred             CeEEEEEEEeCCcCe-eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCC--CceEEEeCCeeCCC
Q psy15128        106 AGFFVCSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPP--PHIRWYKNGNSLPP  179 (292)
Q Consensus       106 ~g~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~--~~~~W~~~~~~l~~  179 (292)
                      +|.|+|.+.+..+.. .....+.|  .....+|.+...+....+..|+.++|.|.+.+.++  +.+.|+++|..+..
T Consensus        83 ~G~Y~C~~~~~~~~~~~~~~~l~V--~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  157 (213)
T 3r06_A           83 IGSYYCQQYYNYPWTFGPGTKLEI--KRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRD  157 (213)
T ss_dssp             CSEEEEEECSSSSCEECCCEEEEE--CCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             CEEEEEecccCCceEEcCCceEEE--eccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCC
Confidence            999999998764322 22234444  22234566666555556668889999999987644  47999999998865

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.75  E-value=3.4e-18  Score=124.80  Aligned_cols=122  Identities=16%  Similarity=0.265  Sum_probs=90.4

Q ss_pred             ecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCCCCc---------------------
Q psy15128        148 LPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEPK---------------------  206 (292)
Q Consensus       148 ~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g~~~---------------------  206 (292)
                      +.+|++++|.|.+   |.+.+.|+|+|..+...     ....+.|.|.++..+|+|.|.                     
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~-----~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s~~~~v~v~~~~~~   86 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL-----TEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSAD   86 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEE-----ESSCCCEEEEEGGGCCEEEEEEESSSSCCCCEEEEEEC----
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCC-----CCCCCeEEeCCCCcCCCEEEEEEecCCCCeeEEEEEEEeccc
Confidence            3579999999998   78899999999877531     123457888888877777321                     


Q ss_pred             ----------------------------------ceEEe-CCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEec
Q psy15128        207 ----------------------------------DTRVA-SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSIL  251 (292)
Q Consensus       207 ----------------------------------~~~~~-~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~  251 (292)
                                                        ...+. +|+.++|.|.   +.|.+.+.|+++|..+...........
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~G~~v~L~C~---g~p~p~i~W~k~~~~l~~~~~~~~~~~  163 (204)
T 1sy6_A           87 DAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCP---QYPGSEILWQHNDKNIGGDEDDKNIGS  163 (204)
T ss_dssp             --------------------------------CCCCEEEEETTEEEEECS---CCCSSCEEEEETTEEESCCTTCTTEEE
T ss_pred             cccccccccccccccccccccccccccccceecCCceeeecCCcEEEEcC---CCCCCceEEEECCEECCCccCCceEec
Confidence                                              01233 8999999997   678889999999998854322221111


Q ss_pred             CCCccccccccccccccc-cccccceeEEEEeeccccc
Q psy15128        252 GDPWFDSRRSRSIFGSVL-GALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       252 ~~~~~~~~~~~~l~i~~~-~~~~~g~y~C~a~n~~g~~  288 (292)
                              ....|.|..+ ...|+|.|+|.|.|..|..
T Consensus       164 --------~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~  193 (204)
T 1sy6_A          164 --------DEDHLSLKEFSELEQSGYYVCYPRGSKPED  193 (204)
T ss_dssp             --------ETTEEEETTCCHHHHCEEEEEEETTSCGGG
T ss_pred             --------CCCEEEEeeCCccccCEEEEEEeccCCCCc
Confidence                    1236889999 9999999999999999974

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.75  E-value=2.6e-17  Score=119.99  Aligned_cols=122  Identities=26%  Similarity=0.425  Sum_probs=93.0

Q ss_pred             cccCCcCCCeeEEEEEEeccccccc--ccEEEEEe-------CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERET--KPALLTVH-------APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQ   72 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~--~~~~l~v~-------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~   72 (292)
                      |.+++.+|+|.|+|.+.+..+....  ..+.+.+.       .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++
T Consensus        70 i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~  149 (201)
T 3s97_C           70 IANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRK  149 (201)
T ss_dssp             ESSCCGGGCEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEE
T ss_pred             ECcCCcccCeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEe
Confidence            6789999999999999986654432  22444443       23445555557788999999999999999999999999


Q ss_pred             CCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128         73 EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      ++..+.  .    ..........|.|.++..+|.|.|+|.+.|..|.......|.|.
T Consensus       150 ~~~~~~--~----~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          150 VLEPMP--S----TAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             TTBCCC--T----TCEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCcCC--C----ceeecCCCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            987542  1    11222335689999999999999999999998888777777664

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.75  E-value=4e-17  Score=117.32  Aligned_cols=118  Identities=21%  Similarity=0.395  Sum_probs=91.5

Q ss_pred             CcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeC-CCeeEEEE---CCeEEeecc
Q psy15128          6 KKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSP-LPSVFWTQ---EGSQVLMFP   81 (292)
Q Consensus         6 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~v~W~~---~~~~~~~~~   81 (292)
                      +.+|+|.|+|.+.+.   .. ..+.|.|..+|.+...+....+.+|+.+.|.|.+.+.| .+.+.|++   ++...... 
T Consensus        57 ~~~d~G~Y~C~~~n~---~~-~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~-  131 (184)
T 3b5h_A           57 SDDQWGEYSCVFLPE---PM-GTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMN-  131 (184)
T ss_dssp             GGGCCEEEEEEEEST---TS-CEEEEEECCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCT-
T ss_pred             chhhCeEEEEEEECC---cC-cEEEEEEecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeec-
Confidence            578999999999972   22 33899999999988888777899999999999999988 78999999   45443211 


Q ss_pred             CCCcceeEEee---ecEEEEccCC-CCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128         82 GNAYGHLHVTQ---EGTLRIQGVQ-KEDAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus        82 ~~~~~~~~~~~---~~~l~i~~~~-~~d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                       ....+.....   ...|.|.+++ .+|.|.|+|.+.|..|.....+.|.|.
T Consensus       132 -~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          132 -GSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             -TGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             -CCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEe
Confidence             1112233322   2489999999 899999999999999887777666653

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.75  E-value=7.6e-17  Score=116.69  Aligned_cols=132  Identities=15%  Similarity=0.174  Sum_probs=90.2

Q ss_pred             CCCccEEecCCcEEEEEEEee-eCCCeeEEEECCeEEeecc-CCC------------cceeEEeeecEEEEccCCCCCCe
Q psy15128         42 RPQDQKVGLNGIASFQCVAEG-SPLPSVFWTQEGSQVLMFP-GNA------------YGHLHVTQEGTLRIQGVQKEDAG  107 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~-~~~------------~~~~~~~~~~~l~i~~~~~~d~g  107 (292)
                      .|..+.+.+|++++|.|.+.+ .+.+.+.|++++..+.... +..            ..+..+..++.|+|.+++.+|+|
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G   83 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTG   83 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCE
T ss_pred             CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCc
Confidence            345677889999999999875 3456899999876553221 110            12334444678999999999999


Q ss_pred             EEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCC-eEEEEeEeccC-CCCceEEEeCCeeC
Q psy15128        108 FFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHS-VAFLPCQAVGS-PPPHIRWYKNGNSL  177 (292)
Q Consensus       108 ~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~-~v~l~C~~~~~-p~~~~~W~~~~~~l  177 (292)
                      .|+|.+.+..+.......|.|..  ....|.+...+  .....|. .++|.|.+.+. |.+.+.|++++..+
T Consensus        84 ~Y~C~~~~~~~~~~~~~~L~V~~--~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l  151 (193)
T 2if7_A           84 SYRAQISTKTSAKLSSYTLRILR--QLRNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTL  151 (193)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEEC--CCEEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEE
T ss_pred             eEEEEEEecCCCeEEEEEEEEEc--cCCCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEc
Confidence            99999998776655555565542  12223444333  1233465 89999999885 57899999998765

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.74  E-value=1e-16  Score=121.88  Aligned_cols=138  Identities=16%  Similarity=0.194  Sum_probs=85.2

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeeeC------CCeeEEEECC--eEE--eecc-----CCCcceeEEee---ecEEEE
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGSP------LPSVFWTQEG--SQV--LMFP-----GNAYGHLHVTQ---EGTLRI   98 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~------~~~v~W~~~~--~~~--~~~~-----~~~~~~~~~~~---~~~l~i   98 (292)
                      +.+...|..+.+.+|++++|.|.+.+.+      .+.+.|+|..  ...  ....     .....++....   ...|.|
T Consensus         6 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I   85 (264)
T 2gjj_A            6 IVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTI   85 (264)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred             cceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEE
Confidence            4455566778899999999999998776      5789999852  211  1110     00122333322   348999


Q ss_pred             ccCCCCCCeEEEEEEEeCCcCe-eEEEEEEEEeecC--------------CCCCeEEeCCCCceecCCCeEEEEeEeccC
Q psy15128         99 QGVQKEDAGFFVCSALSVAGST-TVRAFLQVTSVED--------------TPPPIVQVGPSNQTLPLHSVAFLPCQAVGS  163 (292)
Q Consensus        99 ~~~~~~d~g~Y~C~~~~~~~~~-~~~~~l~v~~~~~--------------~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~  163 (292)
                      .+++.+|+|.|.|.+.+..+.. .....|.|.....              ..+......+....+.+|++++|.|.+.+.
T Consensus        86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~  165 (264)
T 2gjj_A           86 GSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGY  165 (264)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEESS
T ss_pred             CCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCC
Confidence            9999999999999998764321 1223455543210              011122222333457788888888888766


Q ss_pred             CC--CceEEEeCC
Q psy15128        164 PP--PHIRWYKNG  174 (292)
Q Consensus       164 p~--~~~~W~~~~  174 (292)
                      +.  +.+.|+++.
T Consensus       166 ~~~~~~v~W~r~~  178 (264)
T 2gjj_A          166 SFTGYFINWVKKN  178 (264)
T ss_dssp             CGGGSEEEEEEEC
T ss_pred             ccCCeEEEEEEEC
Confidence            53  678888763

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.74  E-value=5.6e-17  Score=137.25  Aligned_cols=132  Identities=20%  Similarity=0.323  Sum_probs=92.4

Q ss_pred             CccEEecCCcEEEEEEE-eeeCCCeeEEEECCeEEeec-----c--CCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         44 QDQKVGLNGIASFQCVA-EGSPLPSVFWTQEGSQVLMF-----P--GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~-----~--~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      ....+.+|++++|.|.+ .+.|.+.+.|++++..+...     +  .....+.....++.|.|.+++.+|+|.|+|.+.+
T Consensus       374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n  453 (581)
T 3o3u_N          374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMN  453 (581)
T ss_dssp             EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEEC
T ss_pred             cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEc
Confidence            34567899999999998 67788899999986522111     0  0112234445566899999999999999999999


Q ss_pred             CCcCe-eEEEEEEEEeecCCCCCeEEeCCCCceecCCCe-EEEEeEecc-CCCCceEEEeCCeeCCC
Q psy15128        116 VAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSV-AFLPCQAVG-SPPPHIRWYKNGNSLPP  179 (292)
Q Consensus       116 ~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~-v~l~C~~~~-~p~~~~~W~~~~~~l~~  179 (292)
                      ..+.. .....|.|..  ....|.+..  ....+..|.. +.|.|.+.+ +|.|.+.|++++.++..
T Consensus       454 ~~~~~~~~~~~l~V~~--~~~~p~i~~--~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~  516 (581)
T 3o3u_N          454 RNGKETKSNYRVRVYQ--IPGKPEIVD--SASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVP  516 (581)
T ss_dssp             TTSCEEEEEEEEEEEB--CCCCCEEES--CCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCT
T ss_pred             CCCceeEEEEEEEEEc--CCCCCEEEc--CCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCC
Confidence            87776 5556666653  222333332  2223555544 567999987 58999999999998865

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.74  E-value=2e-17  Score=126.31  Aligned_cols=167  Identities=21%  Similarity=0.322  Sum_probs=88.7

Q ss_pred             CCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--eE--Eeec
Q psy15128          5 VKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--SQ--VLMF   80 (292)
Q Consensus         5 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~~--~~~~   80 (292)
                      .+++|.+.|.|.+.+..+..... .      ...+...+..+.+.+|++++|.|.+.+ +.+.+.|+|..  ..  ....
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~~~~-~------~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~   74 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGSGGG-G------GMKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLIN   74 (270)
T ss_dssp             --------------------------------CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEE
T ss_pred             chhhhHHHHHHHHhccCCccccc-c------ceeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEE
Confidence            56889999999998876543322 2      233444555678899999999999865 66799999822  11  1100


Q ss_pred             -cCCC-------cc-eeEEe----eecEEEEccCCCCCCeEEEEEEEeCCcC----eeEEEEEEEEeec-CCCCCeEE-e
Q psy15128         81 -PGNA-------YG-HLHVT----QEGTLRIQGVQKEDAGFFVCSALSVAGS----TTVRAFLQVTSVE-DTPPPIVQ-V  141 (292)
Q Consensus        81 -~~~~-------~~-~~~~~----~~~~l~i~~~~~~d~g~Y~C~~~~~~~~----~~~~~~l~v~~~~-~~~~~~~~-~  141 (292)
                       ....       .. ++...    .+..|.|.+++.+|+|.|.|.+.+....    ......+.|.... ...+|.+. .
T Consensus        75 ~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~  154 (270)
T 3qib_D           75 FQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVF  154 (270)
T ss_dssp             EETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEE
T ss_pred             ECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEE
Confidence             0000       00 22222    2448999999999999999999864221    1122345554211 11133333 3


Q ss_pred             CCCCceecCCCeEEEEeEecc-CCCC-ceEEEeCCeeCCC
Q psy15128        142 GPSNQTLPLHSVAFLPCQAVG-SPPP-HIRWYKNGNSLPP  179 (292)
Q Consensus       142 ~~~~~~~~~g~~v~l~C~~~~-~p~~-~~~W~~~~~~l~~  179 (292)
                      .+....+..|+.++|.|.+.+ .|.+ .+.|+++|.++..
T Consensus       155 ~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~  194 (270)
T 3qib_D          155 EPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS  194 (270)
T ss_dssp             ECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             CCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCC
Confidence            344444566999999999987 5656 7999999998865

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.74  E-value=5.1e-17  Score=118.44  Aligned_cols=117  Identities=10%  Similarity=0.011  Sum_probs=84.5

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeC-C--CeeEEEECCeEEe
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSP-L--PSVFWTQEGSQVL   78 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~-~--~~v~W~~~~~~~~   78 (292)
                      |.+++.+|+|.|+|.+.|..+..... +.|.|..+|..........+.+|+.++|.|.+.+.+ .  +.+.|++++..+.
T Consensus        58 I~~v~~~D~G~Y~C~a~n~~~~~~~~-~~l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~  136 (202)
T 1vca_A           58 MNPVSFGNEHSYLCTATCESRKLEKG-IQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMK  136 (202)
T ss_dssp             ESSCCGGGCSEEEEEEEETTEEEEEE-EEEEEEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEE
T ss_pred             ECcCCHHHCEEEEEEEEECCceEeeE-EEEEEEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECc
Confidence            78899999999999999987765444 899998776533222226688999999999998864 3  3789999998764


Q ss_pred             eccCCCc--ceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         79 MFPGNAY--GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        79 ~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      .......  ..........|.|.....+|.|.|+|.|.|..+.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~  179 (202)
T 1vca_A          137 SQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE  179 (202)
T ss_dssp             EEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             ccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccC
Confidence            3221110  0001222446788888889999999999997765

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.74  E-value=2e-17  Score=123.82  Aligned_cols=141  Identities=15%  Similarity=0.227  Sum_probs=96.0

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--e---EEeecc----CCCcceeEEe---eecEEEEccCCCC
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--S---QVLMFP----GNAYGHLHVT---QEGTLRIQGVQKE  104 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~---~~~~~~----~~~~~~~~~~---~~~~l~i~~~~~~  104 (292)
                      +.+...+....+.+|++++|.|.+.+.+.+.+.|+|..  .   .+....    .....++...   ....|.|.+++.+
T Consensus        25 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  104 (237)
T 3sob_L           25 IQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPE  104 (237)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             ceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChh
Confidence            34555567788999999999999988888899999843  1   111000    0111222222   3457999999999


Q ss_pred             CCeEEEEEEEeCCcCe-eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-C-CCceEEEeCCeeCCC
Q psy15128        105 DAGFFVCSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-P-PPHIRWYKNGNSLPP  179 (292)
Q Consensus       105 d~g~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~l~~  179 (292)
                      |+|.|+|.+.+..+.. .....+.|..  ...+|.+...+.......|+.++|.|.+.+. | .+.+.|+++|..+..
T Consensus       105 D~G~Y~C~~~~~~~~~~~~~~~l~V~~--~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~  180 (237)
T 3sob_L          105 DFATYYCQQSYTTPPTFGQGTKVEIKR--TVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSG  180 (237)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEEC--CCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCS
T ss_pred             hCeEEEEeeccCCceEEcCcEEEEEec--CCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCC
Confidence            9999999998765422 2223455543  2345566555555555678899999999874 4 578999999998875

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.74  E-value=2.4e-16  Score=116.47  Aligned_cols=175  Identities=17%  Similarity=0.227  Sum_probs=105.3

Q ss_pred             CCccEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEee---cc---------CCCcceeEEee-----ecEEEEccC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVLM---FP---------GNAYGHLHVTQ-----EGTLRIQGV  101 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~~---~~---------~~~~~~~~~~~-----~~~l~i~~~  101 (292)
                      +....+.+|++++|.|.+.+.+  .+.+.|+|+  +..+..   ..         .....+.....     ...|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (219)
T 1c1e_H            7 SGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNL   86 (219)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSC
T ss_pred             CCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCC
Confidence            4456788999999999998764  678999996  332210   00         00123333322     358999999


Q ss_pred             CCCCCeEEEEEEEeCCcCe----eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEecc-CCCC-ceEEEeCCe
Q psy15128        102 QKEDAGFFVCSALSVAGST----TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVG-SPPP-HIRWYKNGN  175 (292)
Q Consensus       102 ~~~d~g~Y~C~~~~~~~~~----~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~~~W~~~~~  175 (292)
                      +.+|+|.|+|.+.+..+..    .....|.|.... ..+|.+...+....+.+|+.++|.|.+.+ +|.| .+.|++++.
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~-~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~  165 (219)
T 1c1e_H           87 KNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAK-TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  165 (219)
T ss_dssp             CGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCC-CBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CcccCEEEEEEEeccCcccceeecCceEEEEecCC-CCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCCc
Confidence            9999999999999875321    123445554321 12344443333344678999999999988 7888 999999987


Q ss_pred             eCCCCC-ccEEEc----CCCcEEEEeeecCCCCCCcceEEeCCCceEEE
Q psy15128        176 SLPPED-TRINVS----SSGSLQIDVLRDDFRAEPKDTRVASGETALLE  219 (292)
Q Consensus       176 ~l~~~~-~~~~~~----~~~~l~i~~~~~~d~g~~~~~~~~~g~~~~l~  219 (292)
                      .+.... ......    ....|.|. ....|.|.|.......+....+.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~s~L~i~-~~~~d~g~Y~C~a~n~~~~~~~~  213 (219)
T 1c1e_H          166 SSGVHTFPAVLQSDLYTLSSSVTVP-SSPRPSETVTCNVAHPASSTKVD  213 (219)
T ss_dssp             CTTEEECCCEESSSCEEEEEEEEEE-SSSTTTSCCEEEEEEGGGTEEEE
T ss_pred             ccceEecCCcccCCeEEEEEEEEEe-cccCCCCEEEEEEEeCCCCccEE
Confidence            653111 111110    01246663 33335576655544444433333

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.73  E-value=7.3e-17  Score=123.58  Aligned_cols=169  Identities=17%  Similarity=0.224  Sum_probs=106.2

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCe-----EEeecc----CCCcceeEEee---ecEEEEccCCCC
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGS-----QVLMFP----GNAYGHLHVTQ---EGTLRIQGVQKE  104 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~-----~~~~~~----~~~~~~~~~~~---~~~l~i~~~~~~  104 (292)
                      +.+...+....+.+|++++|.|.+.+.|.+.+.|+|++.     .+....    .....++....   ...|.|.+++.+
T Consensus        13 ~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   92 (276)
T 3auv_A           13 IQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPE   92 (276)
T ss_dssp             CCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChh
Confidence            445556677788999999999999988888999998642     111100    01112333322   237999999999


Q ss_pred             CCeEEEEEEEeCCcC-eeEEEEEEEEeecC---------CCCCeEEeCCCCceecCCCeEEEEeEeccCC--CCceEEEe
Q psy15128        105 DAGFFVCSALSVAGS-TTVRAFLQVTSVED---------TPPPIVQVGPSNQTLPLHSVAFLPCQAVGSP--PPHIRWYK  172 (292)
Q Consensus       105 d~g~Y~C~~~~~~~~-~~~~~~l~v~~~~~---------~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p--~~~~~W~~  172 (292)
                      |+|.|+|.+.+..+. ......|.|.....         ..++.....+....+.+|++++|.|.+.+.+  .+.+.|++
T Consensus        93 DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k  172 (276)
T 3auv_A           93 DFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVR  172 (276)
T ss_dssp             GCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             hCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEE
Confidence            999999999886443 12223455443210         1122333345567788999999999998876  47899999


Q ss_pred             CC--eeC----------------CCCCccEEEcCC-----CcEEEEeeecCCCCCC
Q psy15128        173 NG--NSL----------------PPEDTRINVSSS-----GSLQIDVLRDDFRAEP  205 (292)
Q Consensus       173 ~~--~~l----------------~~~~~~~~~~~~-----~~l~i~~~~~~d~g~~  205 (292)
                      ++  ..+                .....++....+     .+|.|.++..+|+|.|
T Consensus       173 ~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y  228 (276)
T 3auv_A          173 QAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVY  228 (276)
T ss_dssp             ECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             cCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEE
Confidence            63  211                011133333322     2688888888888844

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.73  E-value=5.4e-17  Score=121.81  Aligned_cols=128  Identities=26%  Similarity=0.397  Sum_probs=93.6

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCC----CcEEe-CCCccEEecCCcEEEEEEEeeeCCCeeEEEE----
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAP----PSFVV-RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQ----   72 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~----p~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~----   72 (292)
                      |.+++.+|+|.|+|.+.+..+..... +.|.|...    |.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++    
T Consensus        76 i~~v~~~d~G~Y~C~~~~~~~~~~~~-~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~  154 (241)
T 3grw_A           76 MESVVPSDRGNYTCVVENKFGSIRQT-YTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEV  154 (241)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEE-EEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCS
T ss_pred             EEeCCcccCEEEEEEEeecCCceEEE-EEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccC
Confidence            67899999999999999987776655 78888652    33332 3556678889999999999999999999999    


Q ss_pred             CCeEEeeccCCCcce------eEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEe
Q psy15128         73 EGSQVLMFPGNAYGH------LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS  130 (292)
Q Consensus        73 ~~~~~~~~~~~~~~~------~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~  130 (292)
                      ++..+..........      ........|.|.++..+|.|.|+|.+.|..|.......|.|..
T Consensus       155 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  218 (241)
T 3grw_A          155 NGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHG  218 (241)
T ss_dssp             SSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC--
T ss_pred             CCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecC
Confidence            665442111100000      0112345799999999999999999999988887777777654

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.73  E-value=2.2e-17  Score=105.71  Aligned_cols=94  Identities=23%  Similarity=0.402  Sum_probs=73.0

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      ||.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..................|.|.+++.+|+|.|+|.|.|
T Consensus         5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   84 (100)
T 3knb_A            5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGN   84 (100)
T ss_dssp             EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEE
Confidence            46666677788899999999999999999999999999987742221111111112234799999999999999999999


Q ss_pred             CCcCeeEEEEEEEE
Q psy15128        116 VAGSTTVRAFLQVT  129 (292)
Q Consensus       116 ~~~~~~~~~~l~v~  129 (292)
                      ..|.....+.|.|.
T Consensus        85 ~~G~~~~~~~l~V~   98 (100)
T 3knb_A           85 EFGSDSATVNIHIR   98 (100)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEE
Confidence            99988877777765

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.73  E-value=7.1e-17  Score=117.43  Aligned_cols=115  Identities=19%  Similarity=0.350  Sum_probs=79.1

Q ss_pred             cccCCcCCCeeEEEEEEecc-cc-cccccEEEEEeC---CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMV-GE-RETKPALLTVHA---PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQ   76 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~-~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~   76 (292)
                      |.+++.+|+|.|+|.+.|.. +. .....+.|.|..   +|.+...+ ...+.+|+.++|.|.+.+. .+.+.|+|++..
T Consensus        62 i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~  139 (198)
T 1ugn_A           62 IPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGED  139 (198)
T ss_dssp             ESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC---
T ss_pred             ECCCCHHHCeEEEEEEECCCCCcccCCccEEEEEcccccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCc
Confidence            77899999999999999876 42 223448888876   34444433 3678899999999999887 679999999876


Q ss_pred             EeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128         77 VLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG  118 (292)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~  118 (292)
                      +..................|.|.+++.+|+|.|+|.+.|..+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          140 EHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             ---CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             cCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCC
Confidence            531100000000011246899999999999999999998754

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.73  E-value=2.4e-17  Score=124.40  Aligned_cols=118  Identities=20%  Similarity=0.289  Sum_probs=85.2

Q ss_pred             cccCCcCCCeeEEEEEEecccccc----cccEEEEEeCC---CcEEe-CCCccEEecCCcEEEEEEEeeeCCCeeEEEEC
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERE----TKPALLTVHAP---PSFVV-RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE   73 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~----~~~~~l~v~~~---p~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~   73 (292)
                      |.+++.+|+|.|+|.+.+..+...    ...+.|.|..+   |.+.. .+....+.+|+.+.|.|.+.+.|.|.+.|+++
T Consensus        94 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~  173 (250)
T 2fbo_J           94 LTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTG  173 (250)
T ss_dssp             ECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEEEEEEE
T ss_pred             EeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCeeEEEeC
Confidence            789999999999999998766432    22378888764   33333 33445667899999999999988889999998


Q ss_pred             CeEEeeccCC-------------------CcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         74 GSQVLMFPGN-------------------AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        74 ~~~~~~~~~~-------------------~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      +..+......                   ...+........|.|.+++.+|+|.|+|.|.|..|.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~  238 (250)
T 2fbo_J          174 PTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGE  238 (250)
T ss_dssp             EECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSG
T ss_pred             CCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccc
Confidence            7654221100                   011122223468999999999999999999996553

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.73  E-value=7.3e-17  Score=114.96  Aligned_cols=113  Identities=16%  Similarity=0.254  Sum_probs=85.2

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCC-CeeEEEECCeEEeec
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPL-PSVFWTQEGSQVLMF   80 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~~~   80 (292)
                      |.+++.+|+|.|+|.+.+..+   ...+.|.|..++..... ....+.+|+.+.|.|.+.+.++ +.+.|++++..+.. 
T Consensus        58 i~~~~~~d~G~Y~C~~~n~~~---s~~~~l~V~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~-  132 (175)
T 1fnl_A           58 IDAATVNDSGEYRCQTNLSTL---SDPVQLEVHIGWLLLQA-PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY-  132 (175)
T ss_dssp             ESSCCGGGCEEEEEECSSSCC---CCCEEEEEECSSEEEEC-SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE-
T ss_pred             EeCCCcccCEEEEEEeeCCcc---cccEEEEEeCCCceeeC-CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC-
Confidence            678999999999999987443   23378888865554433 4567889999999999987655 49999999987631 


Q ss_pred             cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC-eeEEEEEEE
Q psy15128         81 PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS-TTVRAFLQV  128 (292)
Q Consensus        81 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~-~~~~~~l~v  128 (292)
                               ......|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|
T Consensus       133 ---------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V  172 (175)
T 1fnl_A          133 ---------FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI  172 (175)
T ss_dssp             ---------EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ---------CCCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEE
Confidence                     233568999999999999999999996443 223344444

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.73  E-value=4.7e-17  Score=116.95  Aligned_cols=108  Identities=18%  Similarity=0.261  Sum_probs=86.7

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeecc
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFP   81 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~   81 (292)
                      |.+++.+|+|.|+|.+.+..+    . +.|.|..   +.. +....+.+|+.++|.|.+.+.|.+.+.|++++..+    
T Consensus        72 i~~v~~~D~G~Y~C~~~~~~~----~-~~l~V~~---~~~-~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~----  138 (184)
T 2ny1_B           72 IKNLKIEDSDTYICEVEDQKE----E-VQLLVFG---LTA-NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN----  138 (184)
T ss_dssp             ECSCCGGGCEEEEEEETTEEE----E-EEEEEEE---EEE-SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCE----
T ss_pred             EecCCHHHCEEEEEEEEcCCC----c-EEEEEEE---ecC-CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc----
Confidence            678999999999999987654    2 5666663   222 44557889999999999988899999999987654    


Q ss_pred             CCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEe
Q psy15128         82 GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS  130 (292)
Q Consensus        82 ~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~  130 (292)
                              ......|.|.+++.+|+|.|+|.+.|..+.....+.|.|..
T Consensus       139 --------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~  179 (184)
T 2ny1_B          139 --------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA  179 (184)
T ss_dssp             --------EEESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             --------ccCceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEe
Confidence                    23466899999999999999999999877777777776654

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.73  E-value=1.4e-16  Score=122.81  Aligned_cols=133  Identities=14%  Similarity=0.270  Sum_probs=83.2

Q ss_pred             CCCccEEecCCcEEEEEEEeeeC--CCeeEEEECC--eE---Eeecc---------CCCcceeEEee-----ecEEEEcc
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGSP--LPSVFWTQEG--SQ---VLMFP---------GNAYGHLHVTQ-----EGTLRIQG  100 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~---~~~~~---------~~~~~~~~~~~-----~~~l~i~~  100 (292)
                      .+....+.+|++++|.|.+.+.+  .+.+.|+|..  ..   +....         .....++....     ...|.|.+
T Consensus        28 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~  107 (291)
T 2gki_A           28 QSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSS  107 (291)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECS
T ss_pred             cCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECc
Confidence            45567889999999999998765  5789999853  11   11000         00112332222     34799999


Q ss_pred             CCCCCCeEEEEEEEeCC-cCee----EEEEEEEEee-----------cCCCCCeEEeCCCCceecCCCeEEEEeEeccCC
Q psy15128        101 VQKEDAGFFVCSALSVA-GSTT----VRAFLQVTSV-----------EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSP  164 (292)
Q Consensus       101 ~~~~d~g~Y~C~~~~~~-~~~~----~~~~l~v~~~-----------~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p  164 (292)
                      ++.+|+|.|+|.+.+.. +...    ....|.|...           ...+++.+...+....+.+|++++|.|.+.+.+
T Consensus       108 v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~  187 (291)
T 2gki_A          108 LTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSL  187 (291)
T ss_dssp             CCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCC
T ss_pred             CCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCcc
Confidence            99999999999998864 1111    1234444320           001123344445556678889999999887776


Q ss_pred             CC------ceEEEeCC
Q psy15128        165 PP------HIRWYKNG  174 (292)
Q Consensus       165 ~~------~~~W~~~~  174 (292)
                      .+      .+.|+|+.
T Consensus       188 ~~~~~~~~~v~W~k~~  203 (291)
T 2gki_A          188 FNSRTRKNYLAWYQQK  203 (291)
T ss_dssp             EETTTTEECEEEEEEC
T ss_pred             ccccccceeEEEEEEC
Confidence            54      78898863

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.73  E-value=6.4e-18  Score=125.27  Aligned_cols=141  Identities=14%  Similarity=0.161  Sum_probs=95.5

Q ss_pred             CceecCCCeEEEEeEeccCCC-----CceEEEeCCeeCC------------CCCccEEEcC------CCcEEEEeeecCC
Q psy15128        145 NQTLPLHSVAFLPCQAVGSPP-----PHIRWYKNGNSLP------------PEDTRINVSS------SGSLQIDVLRDDF  201 (292)
Q Consensus       145 ~~~~~~g~~v~l~C~~~~~p~-----~~~~W~~~~~~l~------------~~~~~~~~~~------~~~l~i~~~~~~d  201 (292)
                      ...+.+|+.++|.|.+.+.|.     +.+.|++++....            ....+.....      +.+|.|.++..+|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D   83 (222)
T 4i0k_A            4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD   83 (222)
T ss_dssp             CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred             CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence            345779999999999987653     5799999864430            1112333332      4579999999999


Q ss_pred             CCCC------------------------------cceEEeCCCceEEEeeCCCCCCCCeEEEeE-cCeEeccCCCceEEe
Q psy15128        202 RAEP------------------------------KDTRVASGETALLECGPPKGQPEPTLHWKK-NGQFIDLESSKRVSI  250 (292)
Q Consensus       202 ~g~~------------------------------~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~g~~~~~~~~~~~~~  250 (292)
                      +|.|                              ....+.+|+.+.|.|.+..+.|.+.+.|++ ++..+..........
T Consensus        84 ~G~Y~C~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~~  163 (222)
T 4i0k_A           84 EGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMA  163 (222)
T ss_dssp             CSCEEEEEEECCCCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEEE
T ss_pred             CEEEEEEEEeCCCceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEEc
Confidence            9932                              223456799999999986788999999999 565553111111211


Q ss_pred             cCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        251 LGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       251 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      ..++.     ...|.|..+..+|.|.|+|.|.|..|.+..
T Consensus       164 ~~~~~-----~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~  198 (222)
T 4i0k_A          164 NERGL-----FDVHSVLRVVLGANGTYSCLVRNPVLQQDA  198 (222)
T ss_dssp             CTTSC-----EEEEEEEEEECCTTCEEEEEEEETTTTEEE
T ss_pred             CCCCe-----EEEEEEEEEEeCCCCEEEEEEECCCCCCce
Confidence            22221     124678889999999999999999998764

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.73  E-value=6.7e-17  Score=122.00  Aligned_cols=168  Identities=13%  Similarity=0.193  Sum_probs=102.9

Q ss_pred             cEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC-----eEEeecc----CCCcceeEEee---ecEEEEccCCCCC
Q psy15128         38 SFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG-----SQVLMFP----GNAYGHLHVTQ---EGTLRIQGVQKED  105 (292)
Q Consensus        38 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~-----~~~~~~~----~~~~~~~~~~~---~~~l~i~~~~~~d  105 (292)
                      .+...+....+.+|+.++|.|.+.+.|.+.+.|+|..     ..+....    .....++....   ...|.|.+++.+|
T Consensus         6 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   85 (250)
T 3esu_F            6 VLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQED   85 (250)
T ss_dssp             CEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhh
Confidence            3444566677889999999999999888899999853     1111100    01112222222   2379999999999


Q ss_pred             CeEEEEEEEeCCcCe-eEEEEEEEEeec--------------CCCCCeEEeCCCCceecCCCeEEEEeEeccCC--CCce
Q psy15128        106 AGFFVCSALSVAGST-TVRAFLQVTSVE--------------DTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSP--PPHI  168 (292)
Q Consensus       106 ~g~Y~C~~~~~~~~~-~~~~~l~v~~~~--------------~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p--~~~~  168 (292)
                      +|.|.|.+.+..+.. .....|.|....              ...++.....+....+.+|++++|.|.+.+.+  .+.+
T Consensus        86 ~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v  165 (250)
T 3esu_F           86 IGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWM  165 (250)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEE
T ss_pred             CEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEE
Confidence            999999998764432 122344443210              00122233344556788999999999998876  6789


Q ss_pred             EEEeC--CeeCCCC----------------CccEEEcCC-----CcEEEEeeecCCCCCC
Q psy15128        169 RWYKN--GNSLPPE----------------DTRINVSSS-----GSLQIDVLRDDFRAEP  205 (292)
Q Consensus       169 ~W~~~--~~~l~~~----------------~~~~~~~~~-----~~l~i~~~~~~d~g~~  205 (292)
                      .|+++  +..+...                ..++....+     .+|.|.++..+|+|.|
T Consensus       166 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y  225 (250)
T 3esu_F          166 NWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVY  225 (250)
T ss_dssp             EEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             EEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEE
Confidence            99997  4332110                122322211     1588888888888743

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.73  E-value=8.8e-17  Score=118.62  Aligned_cols=159  Identities=14%  Similarity=0.195  Sum_probs=97.9

Q ss_pred             CCccEEecCCcEEEEEEEe-eeC-CCeeEEEECCe--EEe--ecc-----CCCcceeEEe---eecEEEEccCCCCCCeE
Q psy15128         43 PQDQKVGLNGIASFQCVAE-GSP-LPSVFWTQEGS--QVL--MFP-----GNAYGHLHVT---QEGTLRIQGVQKEDAGF  108 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~-~~~-~~~v~W~~~~~--~~~--~~~-----~~~~~~~~~~---~~~~l~i~~~~~~d~g~  108 (292)
                      |....+.+|++++|.|.+. +.+ .+.+.|+|++.  ...  ...     .....++...   ....|.|.+++.+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   86 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence            5567788999999999954 332 57899999542  111  100     0111233322   23389999999999999


Q ss_pred             EEEEEEeCCcCe--eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC-ceEEEeCCeeCCCC-Ccc
Q psy15128        109 FVCSALSVAGST--TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP-HIRWYKNGNSLPPE-DTR  183 (292)
Q Consensus       109 Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~~~W~~~~~~l~~~-~~~  183 (292)
                      |+|.+.+..+..  .....|.|.  ....+|.+...+.......|+.++|.|.+.+. |.+ .+.|+++|.++... ...
T Consensus        87 Y~C~~~~~~~~~~~~~~~~l~V~--~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~  164 (216)
T 2xzc_L           87 YYCGTWDSSLNPVFGGGTKLEIK--RTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQES  164 (216)
T ss_dssp             EEEEEECTTSCEEEBCCEEEEEC--CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEE
T ss_pred             EEEEEEeCCCcceECCCEEEEEc--CCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEe
Confidence            999999876511  122344443  22234555543333334468899999999874 554 89999999988654 111


Q ss_pred             --EEEcCCC------cEEEEeeecCCCC
Q psy15128        184 --INVSSSG------SLQIDVLRDDFRA  203 (292)
Q Consensus       184 --~~~~~~~------~l~i~~~~~~d~g  203 (292)
                        .....++      .|.|..+..+|+|
T Consensus       165 ~~~~~~~~g~~~~~s~L~i~~~~~~d~g  192 (216)
T 2xzc_L          165 VTEQDSKDSTYSLSSTLTLSKADYEKHK  192 (216)
T ss_dssp             ECCCCTTTCCEEEEEEEEEEHHHHTTCC
T ss_pred             cCcccCCCCCEEEEEEEEECHHHhCCCC
Confidence              1111222      4666666666666

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.73  E-value=2.4e-17  Score=124.62  Aligned_cols=165  Identities=19%  Similarity=0.235  Sum_probs=103.7

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeeeC-----CCeeEEEECCe--E--Eeec-----cCCCcceeEEee---ecEEEEc
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGSP-----LPSVFWTQEGS--Q--VLMF-----PGNAYGHLHVTQ---EGTLRIQ   99 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~-----~~~v~W~~~~~--~--~~~~-----~~~~~~~~~~~~---~~~l~i~   99 (292)
                      +.+...+....+.+|++++|.|.+.+.+     .+.+.|+|++.  .  ....     ......+.....   ...|.|.
T Consensus        35 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~  114 (252)
T 3bkj_L           35 VLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRIS  114 (252)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             cEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEEC
Confidence            4455557778899999999999998876     57999999641  1  1110     001112333322   2389999


Q ss_pred             cCCCCCCeEEEEEEEeCCcCee-EEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC-ceEEEeCCee
Q psy15128        100 GVQKEDAGFFVCSALSVAGSTT-VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP-HIRWYKNGNS  176 (292)
Q Consensus       100 ~~~~~d~g~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~~~W~~~~~~  176 (292)
                      +++.+|+|.|+|.+.+..+... ....+.|..  ...+|.+...+....+..|+.++|.|.+.+. |.+ .+.|+++|..
T Consensus       115 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~--~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~  192 (252)
T 3bkj_L          115 RVEAEDLGVYYCFQASLVPLTFGAGTKLELKR--ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE  192 (252)
T ss_dssp             SCCGGGCEEEEEEECSBSSCEECCCEEEEECC--CCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             CCCcccCEEEEEEEEcCCccEECCCEEEEEeC--CCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCee
Confidence            9999999999999987654221 123444432  2234555554444444578999999999874 443 7999999998


Q ss_pred             CCCC-Cc--cEEEcCCC------cEEEEeeecCCCC
Q psy15128        177 LPPE-DT--RINVSSSG------SLQIDVLRDDFRA  203 (292)
Q Consensus       177 l~~~-~~--~~~~~~~~------~l~i~~~~~~d~g  203 (292)
                      +... ..  ......++      .|.|..+..+|+|
T Consensus       193 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g  228 (252)
T 3bkj_L          193 RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHN  228 (252)
T ss_dssp             ECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCC
T ss_pred             cCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCC
Confidence            7653 11  11112233      3667666666666

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.72  E-value=8e-17  Score=120.81  Aligned_cols=135  Identities=18%  Similarity=0.231  Sum_probs=90.6

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeeeC----CCeeEEEECC--eE--Eeecc-----CCCcceeEEee---ecEEEEccCC
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGSP----LPSVFWTQEG--SQ--VLMFP-----GNAYGHLHVTQ---EGTLRIQGVQ  102 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~~----~~~v~W~~~~--~~--~~~~~-----~~~~~~~~~~~---~~~l~i~~~~  102 (292)
                      +...+....+.+|+.++|.|.+.+.|    .+.+.|+|+.  ..  .....     .....+.....   ...|.|.+++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   83 (240)
T 1moe_A            4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVE   83 (240)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCC
Confidence            34456667889999999999998877    6789999952  21  11110     01112333322   2379999999


Q ss_pred             CCCCeEEEEEEEeCCcC-eeEEEEEEEEeecCC-CCCeEEeCCCCceecCCCeEEEEeEeccCCC--CceEEEeC
Q psy15128        103 KEDAGFFVCSALSVAGS-TTVRAFLQVTSVEDT-PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPP--PHIRWYKN  173 (292)
Q Consensus       103 ~~d~g~Y~C~~~~~~~~-~~~~~~l~v~~~~~~-~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~--~~~~W~~~  173 (292)
                      .+|+|.|+|.+.+..+. ......|.|...... +++.....+....+.+|+.++|.|.+.+.|.  +.+.|+++
T Consensus        84 ~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~  158 (240)
T 1moe_A           84 ADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQ  158 (240)
T ss_dssp             GGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             hhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEE
Confidence            99999999999987543 223345555432110 2333444466677889999999999988863  58999996

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.72  E-value=9.9e-18  Score=122.96  Aligned_cols=125  Identities=22%  Similarity=0.369  Sum_probs=94.0

Q ss_pred             cccCCcCCCeeEEEEEEeccccc-ccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEE-eeeCCCeeEEEECCeEEee
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGER-ETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA-EGSPLPSVFWTQEGSQVLM   79 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~   79 (292)
                      |.+++.+|+|.|+|.+.+..+.. ....+.|.|..+|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..
T Consensus        72 i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~  151 (209)
T 1nbq_A           72 FKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPT  151 (209)
T ss_dssp             CSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCS
T ss_pred             EeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCC
Confidence            78999999999999999876522 223378888888877766667788999999999996 7889999999999876642


Q ss_pred             ccCCC----cceeEE-eeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEE
Q psy15128         80 FPGNA----YGHLHV-TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL  126 (292)
Q Consensus        80 ~~~~~----~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l  126 (292)
                      .....    ...... ...+.|.|.+++.+|.|.|+|.+.|..|....+..+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v  203 (209)
T 1nbq_A          152 NPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV  203 (209)
T ss_dssp             CSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCB
T ss_pred             ccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccE
Confidence            22110    011111 134589999999999999999999998887444333

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.72  E-value=2.3e-16  Score=116.84  Aligned_cols=164  Identities=16%  Similarity=0.199  Sum_probs=101.7

Q ss_pred             CCccEEecCCcEEEEEEEeeeC--CCeeEEEECC--eE---Eeec-----------cCCCcceeEEee-----ecEEEEc
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSP--LPSVFWTQEG--SQ---VLMF-----------PGNAYGHLHVTQ-----EGTLRIQ   99 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~---~~~~-----------~~~~~~~~~~~~-----~~~l~i~   99 (292)
                      +....+.+|++++|.|.+.+.+  .+.+.|+|..  ..   +...           ......+.....     ...|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   86 (222)
T 1q9r_B            7 SGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN   86 (222)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             CCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEEC
Confidence            3456788999999999998754  6789999853  11   1100           001123444332     3489999


Q ss_pred             cCCCCCCeEEEEEEEeCCc-----CeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC-ceEEEe
Q psy15128        100 GVQKEDAGFFVCSALSVAG-----STTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP-HIRWYK  172 (292)
Q Consensus       100 ~~~~~d~g~Y~C~~~~~~~-----~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~~~W~~  172 (292)
                      +++.+|+|.|.|.+.+..+     .......|.|.... ..+|.+...+....+..|+.++|.|.+.+. |.| .+.|++
T Consensus        87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~-~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  165 (222)
T 1q9r_B           87 TLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAK-TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS  165 (222)
T ss_dssp             SCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSC-CBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             cCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCC-CCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEec
Confidence            9999999999999988653     11223455554321 223444433333346689999999999885 877 999999


Q ss_pred             CCeeCCCCCccEEEcCC------CcEEEEeeecCCCCCCcceE
Q psy15128        173 NGNSLPPEDTRINVSSS------GSLQIDVLRDDFRAEPKDTR  209 (292)
Q Consensus       173 ~~~~l~~~~~~~~~~~~------~~l~i~~~~~~d~g~~~~~~  209 (292)
                      +|..+...... ....+      ..|.|..+..+| |.|....
T Consensus       166 ~g~~~~~~~~~-~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a  206 (222)
T 1q9r_B          166 GSLSSGVHTFP-AVLQSDLYTLSSSVTVPSSTWPS-ETVTCNV  206 (222)
T ss_dssp             GTBCTTEEEEE-EEEETTEEEEEEEEEEETTTTTT-SCCEEEE
T ss_pred             CCeEcceEecc-ccccCCcEEEEEEEEECchhcCC-CeEEEEE
Confidence            98776431100 11112      246666666666 7654433

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.72  E-value=3.6e-17  Score=121.18  Aligned_cols=123  Identities=20%  Similarity=0.265  Sum_probs=83.2

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEEC-CeEEeec
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE-GSQVLMF   80 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~-~~~~~~~   80 (292)
                      |.+++.+|+|.|+|.+.+ .+..... +.|.|..++..........+.+|+.+.|.|.+.|.|.+.+.|+++ +..+...
T Consensus        84 I~~v~~~D~G~Y~C~~~~-~~~~~~~-~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~  161 (222)
T 3sbw_C           84 ITDVKLQDAGVYRCMISY-GGADYKR-ITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGK  161 (222)
T ss_dssp             ESSCCGGGCEEEEEEEES-SSEEEEE-EEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCE
T ss_pred             EcCcccccCeEEEEEEEe-CCCceeE-EEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCc
Confidence            789999999999999998 4444444 888888766533222223567899999999999999999999998 4333110


Q ss_pred             cCCCcceeEEeeec---EEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128         81 PGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus        81 ~~~~~~~~~~~~~~---~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      .   ........++   ...+..+...|.|.|+|.|.|..+.....+.+.|.
T Consensus       162 ~---~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~  210 (222)
T 3sbw_C          162 T---TTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIP  210 (222)
T ss_dssp             E---EEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECC
T ss_pred             c---ceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEec
Confidence            0   0000011111   11222345689999999999999988887777664

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.72  E-value=7.7e-18  Score=125.79  Aligned_cols=167  Identities=13%  Similarity=0.170  Sum_probs=87.1

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCe--EE--eec-----cCCCcceeE---EeeecEEEEccCCCC
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGS--QV--LMF-----PGNAYGHLH---VTQEGTLRIQGVQKE  104 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~--~~--~~~-----~~~~~~~~~---~~~~~~l~i~~~~~~  104 (292)
                      +.+...+....+.+|++++|.|.+.+.+.+.+.|+|++.  ..  ...     ......+..   ......|.|.+++.+
T Consensus        24 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  103 (233)
T 3bqu_C           24 TTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSE  103 (233)
T ss_dssp             CCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CC
T ss_pred             eeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHH
Confidence            445555777789999999999999888778899998532  11  110     000011121   223347999999999


Q ss_pred             CCeEEEEEEEeCCcCe-eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC-ceEEEeCCeeCCCC-
Q psy15128        105 DAGFFVCSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP-HIRWYKNGNSLPPE-  180 (292)
Q Consensus       105 d~g~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~~~W~~~~~~l~~~-  180 (292)
                      |+|.|.|.+.+..+.. .....+.|..  ...+|.+...+.......|+.++|.|.+.+. |.+ .+.|+++|.++... 
T Consensus       104 D~G~Y~C~~~~~~~~~~~~~~~l~V~~--~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~  181 (233)
T 3bqu_C          104 DVADYYCLQSDNLPYTFGGGTNLEIKR--ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGV  181 (233)
T ss_dssp             CCSEEEEEECSSSSCCBCCCCBC---C--CCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCE
T ss_pred             HCEEEEEEEecCCceeecCCEEEEEeC--CCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCc
Confidence            9999999998765422 1122344432  1224555554444344579999999999875 443 69999999887653 


Q ss_pred             CccE--EEcCCC------cEEEEeeecCCCCCC
Q psy15128        181 DTRI--NVSSSG------SLQIDVLRDDFRAEP  205 (292)
Q Consensus       181 ~~~~--~~~~~~------~l~i~~~~~~d~g~~  205 (292)
                      ....  ....++      .|.|..+..+|+|.|
T Consensus       182 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y  214 (233)
T 3bqu_C          182 LNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSY  214 (233)
T ss_dssp             EEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCE
T ss_pred             eEecCCccCCCCCEEEEEEEEECHHHhCCCCCE
Confidence            1101  111222      356666666676644

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.72  E-value=3.4e-17  Score=120.55  Aligned_cols=119  Identities=18%  Similarity=0.257  Sum_probs=87.8

Q ss_pred             cccCCcCCCeeEEEEEEeccc--ccccccEEEEEe----CCCcEEeCCCccEEecCCcEEEEEEEeee-CC-CeeEEEEC
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVG--ERETKPALLTVH----APPSFVVRPQDQKVGLNGIASFQCVAEGS-PL-PSVFWTQE   73 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~--~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~W~~~   73 (292)
                      |.+++.+|+|.|+|.+.+..+  ......+.|.|.    .+|.+...+....+.+|+.++|.|.+.+. |+ +.+.|+++
T Consensus        74 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~  153 (213)
T 3mj8_L           74 ISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEAD  153 (213)
T ss_dssp             ESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             ECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcC
Confidence            789999999999999999877  233444888888    67777776666656689999999999885 43 48999999


Q ss_pred             CeEEeeccCCCc---ceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         74 GSQVLMFPGNAY---GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        74 ~~~~~~~~~~~~---~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      +..+........   ........+.|.|.++..+|.|.|+|.|.|..+..
T Consensus       154 g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  203 (213)
T 3mj8_L          154 GTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTV  203 (213)
T ss_dssp             TEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEE
T ss_pred             CcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccE
Confidence            987632100000   11112234569999999999999999999986543

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.72  E-value=1.1e-16  Score=119.26  Aligned_cols=128  Identities=23%  Similarity=0.362  Sum_probs=94.1

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCC----cEEe-CCCccEEecCCcEEEEEEEeeeCCCeeEEEE----
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP----SFVV-RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQ----   72 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p----~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~----   72 (292)
                      |.+++.+|+|.|+|.+.+..+..... +.|.|...+    .+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++    
T Consensus        80 i~~~~~~d~G~Y~C~~~n~~~~~~~~-~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~  158 (231)
T 3ojm_B           80 MESVVPSDKGNYTCVVENEYGSINHT-YHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEK  158 (231)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEE-EEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCB
T ss_pred             EecCCcccCEEEEEEEecccCccccc-EEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCC
Confidence            67899999999999999987776555 788887532    2222 2456778899999999999999999999999    


Q ss_pred             CCeEEeeccCCCccee-----EEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEe
Q psy15128         73 EGSQVLMFPGNAYGHL-----HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS  130 (292)
Q Consensus        73 ~~~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~  130 (292)
                      ++..+...........     .....+.|.|.++..+|+|.|+|.+.|..|.......|.|..
T Consensus       159 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  221 (231)
T 3ojm_B          159 NGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLP  221 (231)
T ss_dssp             TTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEec
Confidence            6554421111000000     011234799999999999999999999998887777777764

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.72  E-value=1.5e-16  Score=120.39  Aligned_cols=158  Identities=16%  Similarity=0.233  Sum_probs=103.1

Q ss_pred             CCCccEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEe--ec-c---------CCCcceeEEee-----ecEEEEcc
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVL--MF-P---------GNAYGHLHVTQ-----EGTLRIQG  100 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~--~~-~---------~~~~~~~~~~~-----~~~l~i~~  100 (292)
                      .|....+.+|++++|.|.+.+.|  .+.+.|+|+  +....  .. .         .....+.....     ...|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (256)
T 1nqb_A            6 QSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSS   85 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECc
Confidence            34567788999999999998764  578999984  22221  10 0         00123333332     24899999


Q ss_pred             CCCCCCeEEEEEEEeCCcC---ee--EEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCC-----ceEE
Q psy15128        101 VQKEDAGFFVCSALSVAGS---TT--VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP-----HIRW  170 (292)
Q Consensus       101 ~~~~d~g~Y~C~~~~~~~~---~~--~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-----~~~W  170 (292)
                      ++.+|+|.|+|.+.+..+.   ..  ....|.|.     +++.+...+....+.+|++++|.|.+.+.|.+     .+.|
T Consensus        86 v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~-----~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W  160 (256)
T 1nqb_A           86 LTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVS-----SDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEW  160 (256)
T ss_dssp             CCGGGCEEEEEEECCTTSSSSCSEECCCEEEEEC-----CCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEE
T ss_pred             CChhhCEEEEEEEeeccCccceeEEcCceeeeec-----ccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEE
Confidence            9999999999999987552   11  22344443     23445555666678999999999999888765     8999


Q ss_pred             Ee--CCeeCC-----------CCCccEEEc---CCCcEEEEeeecCCCCC
Q psy15128        171 YK--NGNSLP-----------PEDTRINVS---SSGSLQIDVLRDDFRAE  204 (292)
Q Consensus       171 ~~--~~~~l~-----------~~~~~~~~~---~~~~l~i~~~~~~d~g~  204 (292)
                      +|  ++..+.           ....++...   ...+|.|.++..+|+|.
T Consensus       161 ~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~  210 (256)
T 1nqb_A          161 YLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGV  210 (256)
T ss_dssp             EEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             EEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEE
Confidence            99  554331           001233221   22368888888888773

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.71  E-value=4.8e-17  Score=119.49  Aligned_cols=122  Identities=19%  Similarity=0.238  Sum_probs=86.0

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeC---CCcEEeCCCccEEecCCcEEEEEEEeee-CCC-eeEEEECCeE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA---PPSFVVRPQDQKVGLNGIASFQCVAEGS-PLP-SVFWTQEGSQ   76 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~~~   76 (292)
                      |.+++.+|+|.|+|.+.+..+......+.|.|..   +|.+...+....+..|+.++|.|.+.+. |.+ .+.|++++..
T Consensus        74 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~  153 (210)
T 1lk3_L           74 IDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTE  153 (210)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             ECCCCHHHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCcc
Confidence            7899999999999999987665444446788875   5666654444445579999999999874 443 8999999987


Q ss_pred             Eeec-----cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEE
Q psy15128         77 VLMF-----PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  123 (292)
Q Consensus        77 ~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~  123 (292)
                      +...     .............+.|.|.++..+|+|.|+|.+.|........
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  205 (210)
T 1lk3_L          154 RRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPVV  205 (210)
T ss_dssp             CCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSCEE
T ss_pred             CCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCeee
Confidence            5321     0000111112233579999999999999999999876654433

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.71  E-value=1.3e-16  Score=120.17  Aligned_cols=141  Identities=20%  Similarity=0.304  Sum_probs=92.5

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC----e-EEee---------ccCCCcceeEEee----ecEEEEcc
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG----S-QVLM---------FPGNAYGHLHVTQ----EGTLRIQG  100 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~----~-~~~~---------~~~~~~~~~~~~~----~~~l~i~~  100 (292)
                      +...+....+.+|++++|.|.+.+.+.+.+.|+|..    . .+..         .......+.....    ...|.|.+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~   83 (246)
T 4dzb_B            4 VSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTS   83 (246)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECS
T ss_pred             cEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECC
Confidence            444566678899999999999988888899999821    0 1100         1111113333322    34799999


Q ss_pred             CCCCCCeEEEEEEEeCCcC----eeEEEEEEEEeec-CCCCCe-EEeCCCCceecCCCeEEEEeEeccCCCC--ceEEEe
Q psy15128        101 VQKEDAGFFVCSALSVAGS----TTVRAFLQVTSVE-DTPPPI-VQVGPSNQTLPLHSVAFLPCQAVGSPPP--HIRWYK  172 (292)
Q Consensus       101 ~~~~d~g~Y~C~~~~~~~~----~~~~~~l~v~~~~-~~~~~~-~~~~~~~~~~~~g~~v~l~C~~~~~p~~--~~~W~~  172 (292)
                      ++.+|+|.|+|.+.+..+.    ......+.|.... ...+|. ....+....+.+|+.++|.|.+.+.|++  .+.|++
T Consensus        84 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k  163 (246)
T 4dzb_B           84 AHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV  163 (246)
T ss_dssp             CCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             CCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEE
Confidence            9999999999999865331    1123345554211 112333 3344555556679999999999887554  799999


Q ss_pred             CCeeCCC
Q psy15128        173 NGNSLPP  179 (292)
Q Consensus       173 ~~~~l~~  179 (292)
                      +|..+..
T Consensus       164 ~g~~l~~  170 (246)
T 4dzb_B          164 NGKEVHS  170 (246)
T ss_dssp             TTEEECT
T ss_pred             CCEECCC
Confidence            9998865

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.71  E-value=1.6e-16  Score=116.53  Aligned_cols=112  Identities=18%  Similarity=0.334  Sum_probs=85.7

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCC---CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEe
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAP---PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVL   78 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~   78 (292)
                      |.+++.+|+|.|+|.+.+..+......+.|.|..+   |.+...+..  +.+|+.+.|.|.+.+.| +.+.|++++..+.
T Consensus        75 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~  151 (208)
T 3r4d_A           75 FQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQ  151 (208)
T ss_dssp             ECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECC
T ss_pred             EccccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCC
Confidence            67899999999999999885444444478888765   444444433  88899999999998865 7999999998763


Q ss_pred             eccCCCcceeEEe-eecEEEEccCCCCCCeEEEEEEEeCCcCee
Q psy15128         79 MFPGNAYGHLHVT-QEGTLRIQGVQKEDAGFFVCSALSVAGSTT  121 (292)
Q Consensus        79 ~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~  121 (292)
                      .     ..+.... .+..|.|.++..+|.|.|+|.+.|..|...
T Consensus       152 ~-----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~  190 (208)
T 3r4d_A          152 L-----TERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRR  190 (208)
T ss_dssp             C-----CSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEE
T ss_pred             C-----CCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCccc
Confidence            1     1122222 236899999999999999999999888754

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.71  E-value=4.5e-17  Score=119.88  Aligned_cols=123  Identities=20%  Similarity=0.247  Sum_probs=87.9

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeC---CCcEEeCCCccEEecCCcEEEEEEEee-eCCC-eeEEEECCeE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA---PPSFVVRPQDQKVGLNGIASFQCVAEG-SPLP-SVFWTQEGSQ   76 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~~~~   76 (292)
                      |.+++.+|+|.|+|.+.+..+......+.|.|..   +|.+...+.......|+.++|.|.+.+ .|.+ .+.|++++..
T Consensus        75 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~  154 (213)
T 3d9a_L           75 INSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE  154 (213)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             ECCCChhhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCc
Confidence            7899999999999999987765444446788875   666666554444557999999999987 5554 8999999987


Q ss_pred             Eeec-----cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEE
Q psy15128         77 VLMF-----PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  124 (292)
Q Consensus        77 ~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~  124 (292)
                      +...     .........+...+.|.|.++..+|.|.|+|.|.|.........
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3d9a_L          155 RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVK  207 (213)
T ss_dssp             ECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEE
T ss_pred             CcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEE
Confidence            6321     00000111122345899999999999999999999876544333

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.71  E-value=1.5e-16  Score=103.10  Aligned_cols=93  Identities=29%  Similarity=0.483  Sum_probs=74.4

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.+.|.|+|++..+..  +.............|.|.+++.+|+|.|+|.|.
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   89 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAA--SERLSFPADGAEHGLLLTAALPTDAGVYVCRAR   89 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCC--CSSEECCEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccc--eeeEEEeecCceEEEEEecCChhhCEEEEEEEE
Confidence            367788888889999999999999999999999999999987632  111111111223479999999999999999999


Q ss_pred             eCCcCeeEEEEEEEE
Q psy15128        115 SVAGSTTVRAFLQVT  129 (292)
Q Consensus       115 ~~~~~~~~~~~l~v~  129 (292)
                      |..|.....+.|.|.
T Consensus        90 N~~G~~~~~~~l~V~  104 (107)
T 3knb_B           90 NAAGEAYAAAAVTVL  104 (107)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEEEE
Confidence            999988877777775

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.71  E-value=2.2e-17  Score=122.74  Aligned_cols=122  Identities=20%  Similarity=0.207  Sum_probs=80.4

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEee-eCCCeeEEEECCeEEeec
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEG-SPLPSVFWTQEGSQVLMF   80 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~   80 (292)
                      |.+++.+|+|.|+|.+.|..+..... +.+.+..  ..........+.+|+.+.|.|.+.+ .|.|.|.|++++..+...
T Consensus        87 I~~v~~~D~G~Y~C~a~n~~~~~~~~-v~~~~~~--~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~  163 (226)
T 4f80_A           87 IHNVTASDSGKYLCYFQDGDFYEKAL-VELKVAA--LGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPT  163 (226)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEEEE-EEEEEEB--CCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCC
T ss_pred             EeeCchHHCeeEEEEEECCCcEEEEE-EEEeecc--ceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCC
Confidence            78999999999999999977665433 4444433  3333334556788999999999988 589999999976543211


Q ss_pred             cCCCcceeEEeeec---EEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128         81 PGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus        81 ~~~~~~~~~~~~~~---~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      ..   .......++   .+.+..++.+|.|.|+|.|.|..+.....+.|.|.
T Consensus       164 ~~---~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~  212 (226)
T 4f80_A          164 VE---APVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIA  212 (226)
T ss_dssp             EE---CCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCC
T ss_pred             Cc---eEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEEC
Confidence            11   111111122   34455677899999999999999988877776653

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.71  E-value=7e-17  Score=123.18  Aligned_cols=186  Identities=17%  Similarity=0.223  Sum_probs=80.2

Q ss_pred             eCCCccEEecCCcEEEEEEEeeeCCC-eeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      +.|....+.+|+++.|+|.+.. +.+ .+.|.-.-......       ........+.+.+++.+  +.|.|.+......
T Consensus         4 v~P~~~~V~~G~sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~-------~~g~~~~~~~l~~v~~~--~~y~C~~~~~~~~   73 (291)
T 1mq8_A            4 VSPSKVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELL-------LPGNNRKVYELSNVQED--SQPMCYSNCPDGQ   73 (291)
T ss_dssp             EECSEEEECTTCEEEEEEEECC-SSCSEEEEECSSCCCCCC-------CSCSSEEEEEEESCCSC--CCCEEEEECSSCE
T ss_pred             EeCCccEEcCCCeEEEEEeCCC-CCCccceEEecCCCcccc-------cCCCceEEEEEEecccC--CeEEEEEEcCCcc
Confidence            4455677899999999999964 444 48885421111000       00111235778888743  4699999754333


Q ss_pred             eeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC--ceEEEeCCeeCCCCCc-------cEEE---
Q psy15128        120 TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP--HIRWYKNGNSLPPEDT-------RINV---  186 (292)
Q Consensus       120 ~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~--~~~W~~~~~~l~~~~~-------~~~~---  186 (292)
                      ....+.+.|..    +|..+.+.+....+.+|+.++|.|.+.+. |..  .|+|+|++.++.....       .+.+   
T Consensus        74 ~~~~v~l~V~~----~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~~~~~~~~l~~~~~  149 (291)
T 1mq8_A           74 STAKTFLTVYW----TPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVR  149 (291)
T ss_dssp             EEEECEEEECB----CCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECCBTTEEEEEECCCS
T ss_pred             EEEEEEEEEec----CCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCCCCCceEEEEeeee
Confidence            33344444442    23333333344558899999999999766 444  4899999987653210       0000   


Q ss_pred             --cCCCcEEEEeeecCCC-C-----------------CC-c------ceEEeCCCceEEEeeCCCCCCCC---eEEEeEc
Q psy15128        187 --SSSGSLQIDVLRDDFR-A-----------------EP-K------DTRVASGETALLECGPPKGQPEP---TLHWKKN  236 (292)
Q Consensus       187 --~~~~~l~i~~~~~~d~-g-----------------~~-~------~~~~~~g~~~~l~C~~~~~~p~~---~~~W~~~  236 (292)
                        ...+.|.+..-..-.. |                 .| .      ...+.+|+.++|+|.+ .|.|++   .++|+++
T Consensus       150 ~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~-~g~~P~~~~~v~w~~~  228 (291)
T 1mq8_A          150 RDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSL-DGLFPVSEAQVHLALG  228 (291)
T ss_dssp             SSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC---------------------------------------------
T ss_pred             eccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEc-CCCCCCcccEEEEEEC
Confidence              0111333322111000 1                 10 0      0135689999999998 775443   6999999


Q ss_pred             CeEec
Q psy15128        237 GQFID  241 (292)
Q Consensus       237 g~~~~  241 (292)
                      |+.+.
T Consensus       229 g~~l~  233 (291)
T 1mq8_A          229 DQRLN  233 (291)
T ss_dssp             -----
T ss_pred             CEecC
Confidence            99885

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.71  E-value=5.7e-16  Score=114.97  Aligned_cols=169  Identities=14%  Similarity=0.198  Sum_probs=103.4

Q ss_pred             CCccEEecCCcEEEEEEEeeeC--CCeeEEEECC--eEE--ee-c---------cCCCcceeEEee-----ecEEEEccC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSP--LPSVFWTQEG--SQV--LM-F---------PGNAYGHLHVTQ-----EGTLRIQGV  101 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~--~~-~---------~~~~~~~~~~~~-----~~~l~i~~~  101 (292)
                      +....+.+|++++|.|.+.+.+  .+.+.|+|..  ...  .. .         ......++....     ...|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (225)
T 1op3_H            7 SGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM   86 (225)
T ss_dssp             ECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCC
Confidence            3456788999999999998765  6789999853  211  10 0         001123444332     358999999


Q ss_pred             CCCCCeEEEEEEEeCCc-----C---eeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC-ceEEE
Q psy15128        102 QKEDAGFFVCSALSVAG-----S---TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP-HIRWY  171 (292)
Q Consensus       102 ~~~d~g~Y~C~~~~~~~-----~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~~~W~  171 (292)
                      +.+|+|.|.|.+.+..+     .   ......|.|......+|.+....+.. .+..|+.++|.|.+.+. |.+ .+.|+
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~  165 (225)
T 1op3_H           87 RVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTVSWN  165 (225)
T ss_dssp             CGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCT-TCCCCCEEEEEEEEEEEBSSCCEEECC
T ss_pred             ChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccc-cccCCCcEEEEEEEEeEECCCeEEEEe
Confidence            99999999999998653     1   11234555553211222233334333 35689999999999876 666 89999


Q ss_pred             eCCeeCCCC-CccEEEcCCC------cEEEEeeecCCCCCCcceEEeCCC
Q psy15128        172 KNGNSLPPE-DTRINVSSSG------SLQIDVLRDDFRAEPKDTRVASGE  214 (292)
Q Consensus       172 ~~~~~l~~~-~~~~~~~~~~------~l~i~~~~~~d~g~~~~~~~~~g~  214 (292)
                      +++..+... .... ...++      .|.|..+..+| |.|.......+.
T Consensus       166 ~~~~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~  213 (225)
T 1op3_H          166 SGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  213 (225)
T ss_dssp             TTSCCTTCEECCCE-ECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGG
T ss_pred             cCCCcCCeEecCce-eCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCC
Confidence            998764211 0111 12333      36666666666 766554444333

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.71  E-value=6.2e-17  Score=119.54  Aligned_cols=142  Identities=18%  Similarity=0.214  Sum_probs=91.3

Q ss_pred             CCcEEeCCCccE--EecCCcEEEEEEEeee---CC-CeeEEEECCeEEeeccCC---CcceeEEeeecEEEEccCCCCCC
Q psy15128         36 PPSFVVRPQDQK--VGLNGIASFQCVAEGS---PL-PSVFWTQEGSQVLMFPGN---AYGHLHVTQEGTLRIQGVQKEDA  106 (292)
Q Consensus        36 ~p~~~~~~~~~~--~~~g~~~~l~C~~~~~---~~-~~v~W~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~  106 (292)
                      +|.+.+.+....  +.+|++++|.|.+.+.   |. +.|.|+|++..+......   ......+...+.|.|.+++.+|+
T Consensus         9 ~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~   88 (218)
T 2rgs_A            9 GPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSG   88 (218)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTT
T ss_pred             CCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCC
Confidence            455544444444  7889999999999887   33 689999999765311100   00001122345799999999999


Q ss_pred             eEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEecc-CCCC-ceEEEeCCeeCC
Q psy15128        107 GFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVG-SPPP-HIRWYKNGNSLP  178 (292)
Q Consensus       107 g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~~~W~~~~~~l~  178 (292)
                      |.|+|.+.+..+.......+... .....+|.+.+.+.......|+.++|.|.+.+ +|.+ .+.|+++|.++.
T Consensus        89 g~Y~C~~~~~~~~~~~~~~v~~~-~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~  161 (218)
T 2rgs_A           89 KEFKCKVNNKDLPSPIERTISKI-KGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEE  161 (218)
T ss_dssp             CCEEEEEEETTCSSCEEEEECCC-CCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             CeEEEEEECCcCCCcceEEEeec-CCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEecc
Confidence            99999999876644222222110 11123445544333333346999999999988 5665 899999998764

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.71  E-value=1.1e-16  Score=115.40  Aligned_cols=108  Identities=16%  Similarity=0.207  Sum_probs=80.8

Q ss_pred             cccCCcCCCeeEEEEEEecccc-cccccEEEEEeC---CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGE-RETKPALLTVHA---PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQV   77 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~   77 (292)
                      |.+++++|+|.|+|.+.+..+. ..+..+.|.|..   +|.+...+ ...+.+|+.++|.|.+.+ +.+.+.|+|++..+
T Consensus        61 I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~  138 (188)
T 1oll_A           61 IPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSS  138 (188)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEESCSCCCEEEEES-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSC
T ss_pred             eCcCCcccCeEEEEEecCCCCCCCCCCceEEEecccCCCCeEEECC-CCccccCCEEEEEEEcCC-CCCEEEEEECCccc
Confidence            6789999999999999886443 223447888864   45555444 456889999999999865 45689999998755


Q ss_pred             eeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         78 LMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      ..      ........+.|.|.+++.+|+|.|+|.+.+..
T Consensus       139 ~~------~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          139 HV------QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             EE------EEEECSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred             cc------cccCCCceeEEEECCCCcCCCcEEEEEEEcCC
Confidence            32      11122345689999999999999999998753

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.71  E-value=1.3e-16  Score=117.67  Aligned_cols=128  Identities=19%  Similarity=0.219  Sum_probs=93.5

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCc-EEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeec
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS-FVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMF   80 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~   80 (292)
                      |.+++.+|+|.|+|.+.+..+........+.+..++. .........+..|+.+.+.|.+.+.|.+.+.|++++..+...
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~  162 (218)
T 4frw_A           83 LRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSS  162 (218)
T ss_dssp             ESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEE
T ss_pred             EeeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccC
Confidence            6799999999999999887665554435555555443 333445556677899999999999999999999998766422


Q ss_pred             cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEe
Q psy15128         81 PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS  130 (292)
Q Consensus        81 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~  130 (292)
                      ..... .......+.|.|.++..+|.|.|+|.|.|..+.....+.+.+.+
T Consensus       163 ~~~~~-~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~V  211 (218)
T 4frw_A          163 RSFKH-SRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILHV  211 (218)
T ss_dssp             EEEEC-SSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCE
T ss_pred             ceEec-CCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEEE
Confidence            11111 11122345799999999999999999999998877777766654

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.71  E-value=1e-16  Score=117.42  Aligned_cols=131  Identities=15%  Similarity=0.156  Sum_probs=86.5

Q ss_pred             EecCCcEEEEEEEeeeC----CCeeEEEECCeEEeeccC---CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         48 VGLNGIASFQCVAEGSP----LPSVFWTQEGSQVLMFPG---NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        48 ~~~g~~~~l~C~~~~~~----~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      +.+|++++|.|.+.+.+    ...+.|+|++..+.....   .......+...+.|.|.+++.+|+|.|+|.+.+..+..
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~   94 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA   94 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence            78899999999998874    248999999976531110   00000112234579999999999999999999887754


Q ss_pred             eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CC-CceEEEeCCeeCCC
Q psy15128        121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PP-PHIRWYKNGNSLPP  179 (292)
Q Consensus       121 ~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~~~W~~~~~~l~~  179 (292)
                      .....+.+. .....+|.+.+.+.......|+.+.|.|.+.+. |+ +.+.|+++|.++..
T Consensus        95 ~~~~~v~~~-~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~  154 (207)
T 2vol_A           95 PIEKTISKT-KGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAEN  154 (207)
T ss_dssp             CEEEEECCC-CCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSC
T ss_pred             ceEEEeccC-CCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccC
Confidence            333333221 011224555444333333469999999999885 44 38999999988743

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.71  E-value=8.7e-17  Score=122.66  Aligned_cols=143  Identities=22%  Similarity=0.366  Sum_probs=85.6

Q ss_pred             cccCCcCCCeeEEEEEEecccccc-cccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEE---eeeCCCeeEEEECCeE-
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERE-TKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA---EGSPLPSVFWTQEGSQ-   76 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~-~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~---~~~~~~~v~W~~~~~~-   76 (292)
                      |.+++.+|+|.|+|.+.+..+... ...+.|.|..     ..+....+.+|+.++|.|.+   .+.|.+.+.|++++.. 
T Consensus        88 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~-----~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~  162 (268)
T 3mj6_A           88 LQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP-----EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSH  162 (268)
T ss_dssp             ECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC-----CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTC
T ss_pred             ECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEec-----cCCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCC
Confidence            789999999999999998654432 2225555542     13446678899999999999   4568889999994321 


Q ss_pred             -----Ee-e----------ccCCCcceeEE-----eeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCC
Q psy15128         77 -----VL-M----------FPGNAYGHLHV-----TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTP  135 (292)
Q Consensus        77 -----~~-~----------~~~~~~~~~~~-----~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~  135 (292)
                           .. .          .......+...     .....|.|.+++.+|+|.|+|.+.|..+.....+.|.|..    .
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~----~  238 (268)
T 3mj6_A          163 TEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ----D  238 (268)
T ss_dssp             SSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC----C
T ss_pred             CcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEc----C
Confidence                 10 0          00011111111     2355899999999999999999999877766666666642    2


Q ss_pred             CCeEEeCCCCceecCCCe
Q psy15128        136 PPIVQVGPSNQTLPLHSV  153 (292)
Q Consensus       136 ~~~~~~~~~~~~~~~g~~  153 (292)
                      +|.+...|....+..|+.
T Consensus       239 ~p~~~~~p~~~~~~~~q~  256 (268)
T 3mj6_A          239 EFQRTISPTPPTDKGQQG  256 (268)
T ss_dssp             ------------------
T ss_pred             CCeeeeCCCCCCCCccee
Confidence            444444455554544443

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.70  E-value=4.2e-16  Score=114.78  Aligned_cols=154  Identities=19%  Similarity=0.240  Sum_probs=100.7

Q ss_pred             CCCccEEecCCcEEEEEEEeee-------CCCeeEEEECCeEE----eec-c-------CCCcceeEEee-----ecEEE
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGS-------PLPSVFWTQEGSQV----LMF-P-------GNAYGHLHVTQ-----EGTLR   97 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~-------~~~~v~W~~~~~~~----~~~-~-------~~~~~~~~~~~-----~~~l~   97 (292)
                      .+..+.+.+|++++|.|.+.+.       +.+.+.|+|++...    ... .       .....+.....     +..|.
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~   85 (214)
T 2zg1_A            6 VQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLS   85 (214)
T ss_dssp             CCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEE
T ss_pred             CCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEE
Confidence            4556788899999999998754       46689999986521    010 0       11123333322     33799


Q ss_pred             EccCCCCCCeEEEEEEEeCCcCee----EEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC----CCCceE
Q psy15128         98 IQGVQKEDAGFFVCSALSVAGSTT----VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS----PPPHIR  169 (292)
Q Consensus        98 i~~~~~~d~g~Y~C~~~~~~~~~~----~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~----p~~~~~  169 (292)
                      |.+++.+|+|.|.|.+.+..+...    ....|.|..  ....|.+.. +.  .+.+|+.++|.|.+.+.    |.|.+.
T Consensus        86 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~--~~~~p~i~~-~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~  160 (214)
T 2zg1_A           86 IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTA--LIEKPDIHF-LE--PLESGRPTRLSCSLPGSCEAGPPLTFS  160 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEEC--CCCCCEEC---C--CCCTTCCEEEEEECTTCCSCSSCCEEE
T ss_pred             EccCCHhhCceEEEEEEcCCCceeeecCCceEEEEec--CCCCCceec-Cc--cccCCCeEEEEEEeccCCCCCCCceEE
Confidence            999999999999999998652211    234455543  222344433 22  26789999999999764    788999


Q ss_pred             EEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCCC
Q psy15128        170 WYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAE  204 (292)
Q Consensus       170 W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g~  204 (292)
                      |++++..+...  .  ....+.|.|..+..+|.|.
T Consensus       161 W~~~~~~~~~~--~--~~~~~~L~i~~~~~~~~g~  191 (214)
T 2zg1_A          161 WTGNALSPLDP--E--TTRSSELTLTPRPEDHGTN  191 (214)
T ss_dssp             EESSTTSSSCS--S--CCCSSEEEECCCTTCCSCE
T ss_pred             EeCCCCccCCC--C--ceeEEEEEEecccHHcCcE
Confidence            99998654321  1  1345678888877777663

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.70  E-value=2.4e-17  Score=120.35  Aligned_cols=138  Identities=12%  Similarity=0.228  Sum_probs=91.9

Q ss_pred             ecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128         49 GLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  128 (292)
Q Consensus        49 ~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v  128 (292)
                      .+|+.++|.|.+   |.+.+.|+|++..+...         ....+.|.|.+++.+|+|.|+|.+.+.. ..  ...+.+
T Consensus        16 ~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~---------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~-s~--~~~v~v   80 (204)
T 1sy6_A           16 QEDGSVLLTCDA---EAKNITWFKDGKMIGFL---------TEDKKKWNLGSNAKDPRGMYQCKGSQNK-SK--PLQVYY   80 (204)
T ss_dssp             CSSSEEEEEECS---CSSEEEEEETTEEEEEE---------ESSCCCEEEEEGGGCCEEEEEEESSSSC-CC--CEEEEE
T ss_pred             cCCCeEEEEEcC---CCCEEEEEECCEECCCC---------CCCCCeEEeCCCCcCCCEEEEEEecCCC-Ce--eEEEEE
Confidence            579999999998   77899999999876421         1134579999999999999999965432 11  122332


Q ss_pred             Ee------e-------------------c-CCCCCeEEeCCCCceec-CCCeEEEEeEeccCCCCceEEEeCCeeCCCCC
Q psy15128        129 TS------V-------------------E-DTPPPIVQVGPSNQTLP-LHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED  181 (292)
Q Consensus       129 ~~------~-------------------~-~~~~~~~~~~~~~~~~~-~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~  181 (292)
                      ..      .                   . ...++.+. ... ..+. +|+.++|.|.  +.|.|.+.|++++..+....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p-~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~  156 (204)
T 1sy6_A           81 RMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGIT-QTP-YKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDE  156 (204)
T ss_dssp             EC-------------------------------------CCC-CEEEEETTEEEEECS--CCCSSCEEEEETTEEESCCT
T ss_pred             EEecccccccccccccccccccccccccccccccccee-cCC-ceeeecCCcEEEEcC--CCCCCceEEEECCEECCCcc
Confidence            20      0                   0 00011121 112 2344 8999999998  77888999999999876532


Q ss_pred             -ccEEEcCCCcEEEEee-ecCCCCCC
Q psy15128        182 -TRINVSSSGSLQIDVL-RDDFRAEP  205 (292)
Q Consensus       182 -~~~~~~~~~~l~i~~~-~~~d~g~~  205 (292)
                       ........+.|.|.++ ..+|+|.|
T Consensus       157 ~~~~~~~~~~~L~I~~v~~~~D~G~Y  182 (204)
T 1sy6_A          157 DDKNIGSDEDHLSLKEFSELEQSGYY  182 (204)
T ss_dssp             TCTTEEEETTEEEETTCCHHHHCEEE
T ss_pred             CCceEecCCCEEEEeeCCccccCEEE
Confidence             2222234778999999 99898844

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.70  E-value=4.9e-17  Score=115.82  Aligned_cols=108  Identities=15%  Similarity=0.102  Sum_probs=80.0

Q ss_pred             CcccCCcCCCeeEEEEEEeccccc-ccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEee
Q psy15128          1 MITEVKKSDEGKYQCYVQNMVGER-ETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLM   79 (292)
Q Consensus         1 ~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~   79 (292)
                      .|.+++++|+|.|+|.+.|..+.. ....+.|.|..++.     .+.....+..+.|.|.+.+.|.+.+.|++++..+..
T Consensus        64 ~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~~-----~p~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~  138 (176)
T 1hng_A           64 KIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVS-----KPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRS  138 (176)
T ss_dssp             EESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCCC-----CCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEE
T ss_pred             EEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCCC-----CCEEEecCCcEEEEEEecCCCCcEEEEEECCEECCC
Confidence            378999999999999999988775 23337788876432     111123345699999999999999999999987642


Q ss_pred             ccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEE
Q psy15128         80 FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL  126 (292)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l  126 (292)
                      .             ..+.|..+..+|.|.|+|.|.|..|.......|
T Consensus       139 ~-------------~~~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l  172 (176)
T 1hng_A          139 L-------------RQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVV  172 (176)
T ss_dssp             E-------------SSSEEEEECSCCSSCEEEEEEETTEEEEEEECC
T ss_pred             C-------------CcEEEEEEEccCCeEEEEEEEecCCCceecccc
Confidence            1             124455777999999999999998876655544

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.70  E-value=5.7e-16  Score=114.16  Aligned_cols=90  Identities=14%  Similarity=0.271  Sum_probs=68.7

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEe---eecEEEEccCCCCCCeEEEEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVCS  112 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C~  112 (292)
                      +|.+ ..+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....   .+....   ..+.|.|.++..+|.|.|+|.
T Consensus        19 ~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~---~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   94 (215)
T 3mtr_A           19 APKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNY---SNIKIYNTPSASYLEVTPDSENDFGNYNCT   94 (215)
T ss_dssp             EEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSS---CSEEEEEETTEEEEEECCCSGGGCEEEEEE
T ss_pred             CCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCC---ccEEEecCCCeeEEEEecCChhhCeEEEEE
Confidence            3444 466667888999999999999999999999999987642211   122222   256899999999999999999


Q ss_pred             EEeCCcCeeEEEEEEEE
Q psy15128        113 ALSVAGSTTVRAFLQVT  129 (292)
Q Consensus       113 ~~~~~~~~~~~~~l~v~  129 (292)
                      +.|..|.......+.+.
T Consensus        95 a~n~~g~~~~~~~l~v~  111 (215)
T 3mtr_A           95 AVNRIGQESLEFILVQA  111 (215)
T ss_dssp             EECSSCEEEEEEEEEEC
T ss_pred             EEECCCceEEEEEEEEC
Confidence            99998877666555543

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.70  E-value=7.9e-17  Score=114.91  Aligned_cols=114  Identities=18%  Similarity=0.257  Sum_probs=84.4

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEe-eeCCCeeEEEECCeEEeec
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE-GSPLPSVFWTQEGSQVLMF   80 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~   80 (292)
                      |.+++.+|+|.|+|.+.+..+.   ..+.|.|..++... .+....+.+|+.+.|.|.+. +.|.+.+.|++++..+.. 
T Consensus        55 i~~v~~~d~G~Y~C~~~~~~~s---~~~~l~V~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~-  129 (176)
T 1f2q_A           55 IVNAKFEDSGEYKCQHQQVNES---EPVYLEVFSDWLLL-QASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKY-  129 (176)
T ss_dssp             ECSCCGGGCEEEEEECTTSSCC---CCEEEEEECSSEEE-EESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCS-
T ss_pred             EeccceecCEEEEEEcCCcccc---ccEEEEEeCcceee-cCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEee-
Confidence            6789999999999999875432   33788888554443 33446788999999999995 566679999999987621 


Q ss_pred             cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC-eeEEEEEEEE
Q psy15128         81 PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS-TTVRAFLQVT  129 (292)
Q Consensus        81 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~-~~~~~~l~v~  129 (292)
                               ......|.|.+++.+|+|.|+|.+.|..+. ....+.|.|.
T Consensus       130 ---------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~  170 (176)
T 1f2q_A          130 ---------WYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI  170 (176)
T ss_dssp             ---------CCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             ---------ecCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEe
Confidence                     122468999999999999999999986332 2333455554

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.70  E-value=2.4e-17  Score=105.54  Aligned_cols=80  Identities=18%  Similarity=0.294  Sum_probs=66.2

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +.+..+.+|+.+.|.|.+ .|.|.|.+.|+++|++|......++.+...+.     ...|.|..+..+|+|.|+|.|+|.
T Consensus        12 p~~~~v~~G~~~~l~C~~-~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~N~   85 (100)
T 3knb_A           12 PSDISIDEGKVLTVACAF-TGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD-----LTTLIIMDVQKQDGGLYTLSLGNE   85 (100)
T ss_dssp             CSEEEEETTSEEEEEEEE-EEESCCEEEEEETTEECCTTGGGTEEEEECSS-----EEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCcEEEeCCCeEEEEEEE-EEecCCEEEEEECceEeeeeccceeeeecccc-----eEEEEEcCCCccCCEEEEEEEEEC
Confidence            457789999999999998 89999999999999999755555555543322     236889999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      +|+++.
T Consensus        86 ~G~~~~   91 (100)
T 3knb_A           86 FGSDSA   91 (100)
T ss_dssp             TEEEEE
T ss_pred             CCEEEE
Confidence            998764

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.70  E-value=1.5e-16  Score=117.80  Aligned_cols=158  Identities=18%  Similarity=0.267  Sum_probs=99.9

Q ss_pred             ccEEecCCcEEEEEEEeeeCC-----CeeEEEECCeEEee--ccC------CCcceeEEee------ecEEEEccCCCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSPL-----PSVFWTQEGSQVLM--FPG------NAYGHLHVTQ------EGTLRIQGVQKED  105 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~-----~~v~W~~~~~~~~~--~~~------~~~~~~~~~~------~~~l~i~~~~~~d  105 (292)
                      .+.+.+|++++|.|.+.+.+.     +.+.|++++.....  ...      ....+..+..      +..|.|.+++.+|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D   83 (222)
T 4i0k_A            4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD   83 (222)
T ss_dssp             CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred             CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence            456788999999999987653     58999997643211  000      1112222222      4579999999999


Q ss_pred             CeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEe-ccCCCCceEEEe-CCeeCCCCCc-
Q psy15128        106 AGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA-VGSPPPHIRWYK-NGNSLPPEDT-  182 (292)
Q Consensus       106 ~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~~~W~~-~~~~l~~~~~-  182 (292)
                      +|.|+|.+.+.. .......|.|.  .....|.+...+ ...+.+|+.++|.|.+ .+.|.+.+.|++ ++..+..... 
T Consensus        84 ~G~Y~C~~~~~~-~~~~~~~l~V~--~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~  159 (222)
T 4i0k_A           84 EGSYTCFVSIQD-FDSAAVSLQVA--APYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTT  159 (222)
T ss_dssp             CSCEEEEEEECC-CCCCCCCCCCC--BCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEE
T ss_pred             CEEEEEEEEeCC-CceEEEEEEEE--cCCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcce
Confidence            999999999753 33333344433  223345555444 3457789999999999 788999999999 4555443211 


Q ss_pred             cEEEcCCCc---EEEEeeecCCCCCCc
Q psy15128        183 RINVSSSGS---LQIDVLRDDFRAEPK  206 (292)
Q Consensus       183 ~~~~~~~~~---l~i~~~~~~d~g~~~  206 (292)
                      ......++.   |.|.++..+|.|.|.
T Consensus       160 ~~~~~~~~~~~~l~i~~v~~~d~G~Y~  186 (222)
T 4i0k_A          160 SQMANERGLFDVHSVLRVVLGANGTYS  186 (222)
T ss_dssp             EEEECTTSCEEEEEEEEEECCTTCEEE
T ss_pred             eEEcCCCCeEEEEEEEEEEeCCCCEEE
Confidence            112223343   688888888888543

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.69  E-value=2.1e-16  Score=116.29  Aligned_cols=122  Identities=16%  Similarity=0.218  Sum_probs=87.9

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEE---eCCCcEEeCCCccEEecCCcEEEEEEEeeeCC--CeeEEEECCeE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTV---HAPPSFVVRPQDQKVGLNGIASFQCVAEGSPL--PSVFWTQEGSQ   76 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v---~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~v~W~~~~~~   76 (292)
                      |.+++.+|+|.|+|.+.+..+......+.|.|   ..+|.+...+....+..|+.++|.|.+.+.++  +.+.|++++..
T Consensus        75 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~  154 (213)
T 3r06_A           75 ISSLESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSE  154 (213)
T ss_dssp             ESSCCGGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred             ECCCCcccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcc
Confidence            78999999999999998876544444478888   56677776666666667889999999988654  38999999987


Q ss_pred             Eeec-----cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEE
Q psy15128         77 VLMF-----PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  123 (292)
Q Consensus        77 ~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~  123 (292)
                      +...     .........+.....|.|.....+|.|.|+|.+.|........
T Consensus       155 l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~~~~  206 (213)
T 3r06_A          155 KRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTAAIV  206 (213)
T ss_dssp             ECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEE
T ss_pred             cCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCcceE
Confidence            6321     0011111122334578899998999999999999976554433

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.69  E-value=7.8e-16  Score=113.00  Aligned_cols=162  Identities=17%  Similarity=0.194  Sum_probs=99.5

Q ss_pred             CCccEEecCCcEEEEEEEeeeC--CCeeEEEECC--eEEe---eccC--------CCcceeEEee-----ecEEEEccCC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSP--LPSVFWTQEG--SQVL---MFPG--------NAYGHLHVTQ-----EGTLRIQGVQ  102 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~~---~~~~--------~~~~~~~~~~-----~~~l~i~~~~  102 (292)
                      +....+.+|++++|.|.+.+.+  .+.+.|+|+.  ....   ....        ....+.....     ...|.|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   86 (210)
T 3d9a_H            7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT   86 (210)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence            4456788999999999998764  4789999852  2211   1000        0112333322     2389999999


Q ss_pred             CCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC-ceEEEeCCeeCCCC
Q psy15128        103 KEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP-HIRWYKNGNSLPPE  180 (292)
Q Consensus       103 ~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~~~W~~~~~~l~~~  180 (292)
                      .+|+|.|+|.+.+.. .......+.|.... ..+|.+...+....+..|+.++|.|.+.+. |.| .+.|++++..+...
T Consensus        87 ~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~-~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~  164 (210)
T 3d9a_H           87 TEDTATYYCANWDGD-YWGQGTLVTVSAAK-TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH  164 (210)
T ss_dssp             GGGCEEEEEEETTSS-CBCCCEEEEECCCC-CBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEE
T ss_pred             cccCEEEEEEEecCc-ccccceEEEeccCC-CCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceE
Confidence            999999999998753 11222445554321 223444433333456789999999999887 777 89999998764311


Q ss_pred             -CccEEEc----CCCcEEEEeeecCCCCCCcc
Q psy15128        181 -DTRINVS----SSGSLQIDVLRDDFRAEPKD  207 (292)
Q Consensus       181 -~~~~~~~----~~~~l~i~~~~~~d~g~~~~  207 (292)
                       .......    ....|.|..+..+| |.|..
T Consensus       165 ~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C  195 (210)
T 3d9a_H          165 TFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTC  195 (210)
T ss_dssp             ECCCEEETTEEEEEEEEEEEGGGTTT-SCCEE
T ss_pred             EcCCccCCCcEEEEEEEEEcHHHcCC-CcEEE
Confidence             1111111    11246676666655 75543

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.69  E-value=2.5e-16  Score=116.17  Aligned_cols=123  Identities=20%  Similarity=0.239  Sum_probs=84.3

Q ss_pred             cccCCcCCCeeEEEEEEeccc-ccccccEEEEEe---CCCcEEeCCCccEEecCCcEEEEEEEeee-CCC-eeEEEECCe
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVG-ERETKPALLTVH---APPSFVVRPQDQKVGLNGIASFQCVAEGS-PLP-SVFWTQEGS   75 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~-~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~~   75 (292)
                      |.+++.+|+|.|+|.+.+..+ ......+.|.|.   .+|.+...+.......|+.++|.|.+.+. |.+ .+.|++++.
T Consensus        76 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~  155 (216)
T 2xzc_L           76 ITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNA  155 (216)
T ss_dssp             ECSCCGGGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             ECCCCcccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCe
Confidence            789999999999999998765 222333677776   35666554433334468899999999884 554 899999998


Q ss_pred             EEeec-----cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEE
Q psy15128         76 QVLMF-----PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  124 (292)
Q Consensus        76 ~~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~  124 (292)
                      .+...     .........+...+.|.|..+..+|.|.|+|.+.|.........
T Consensus       156 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  209 (216)
T 2xzc_L          156 LQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTK  209 (216)
T ss_dssp             ECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEE
T ss_pred             ecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCceEE
Confidence            65321     00001111122334799999999999999999999776544333

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.68  E-value=1.4e-16  Score=118.78  Aligned_cols=180  Identities=16%  Similarity=0.198  Sum_probs=92.6

Q ss_pred             eeEEEEEEecccccccccEEEEEeCCCcE-EeCCCccE-EecCCcEEEEEEEeeeC----CCeeEEEECCeEEeeccCCC
Q psy15128         11 GKYQCYVQNMVGERETKPALLTVHAPPSF-VVRPQDQK-VGLNGIASFQCVAEGSP----LPSVFWTQEGSQVLMFPGNA   84 (292)
Q Consensus        11 G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~-~~~~~~~~-~~~g~~~~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~   84 (292)
                      |.|.|.+.+.-+.  .. .. .+..+|.+ +..+.... +..|+.++|.|.+.+++    ...+.|++++..+.......
T Consensus         1 ~~~~~~~~~~~~~--c~-~~-~~~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~   76 (240)
T 4acp_A            1 GTKSCDKTHTCPP--CP-AP-ELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKP   76 (240)
T ss_dssp             --------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECC
T ss_pred             CceeeeeeecCCC--CC-cc-ccCCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceecc
Confidence            7899999886543  21 11 11223443 34444444 55699999999999864    33799999998763211000


Q ss_pred             ---cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEec
Q psy15128         85 ---YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAV  161 (292)
Q Consensus        85 ---~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~  161 (292)
                         .....+...+.|.|.....+|.|.|+|.+.+..+.......+.... ....+|.+.+.+.......|+.++|.|.+.
T Consensus        77 ~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~-~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~  155 (240)
T 4acp_A           77 REEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAK-GQPREPQVYTLPPSRDELTKNQVSLTCLVK  155 (240)
T ss_dssp             CEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCC-SCCBCCEEEEECCCGGGGGSSEEEEEEEEE
T ss_pred             ceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccC-CCCCCCEEEEECCChHHhcCCceEEEEEEe
Confidence               0011122335788888878889999999998766433333332211 112344454444433334589999999998


Q ss_pred             cC-CCC-ceEEEeCCeeCCCCC-ccEEEcCCCcEEEE
Q psy15128        162 GS-PPP-HIRWYKNGNSLPPED-TRINVSSSGSLQID  195 (292)
Q Consensus       162 ~~-p~~-~~~W~~~~~~l~~~~-~~~~~~~~~~l~i~  195 (292)
                      ++ |.+ .+.|+++|.++.... .......++++.+.
T Consensus       156 gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~  192 (240)
T 4acp_A          156 GFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLY  192 (240)
T ss_dssp             EEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEE
T ss_pred             EEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEE
Confidence            85 543 799999998864311 11222445555544

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.68  E-value=1.4e-15  Score=109.85  Aligned_cols=118  Identities=20%  Similarity=0.259  Sum_probs=88.6

Q ss_pred             cEEecCCcEEEEEEEeeeCCC--eeEEEECCeEEeeccCCCcceeE-EeeecEEEEccCCCCCCeEEEEEEEeCCcCeeE
Q psy15128         46 QKVGLNGIASFQCVAEGSPLP--SVFWTQEGSQVLMFPGNAYGHLH-VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV  122 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~  122 (292)
                      +.+..|++++|.|.+ +.|.|  .|.|++.+..+        +... ......|.|.+++.+|.|.|.|.+.+..+....
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l--------~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~   87 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL--------GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQH   87 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT--------CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc--------CcEEecCCccEEEECccCcccCceEEEEEEeCCCceEE
Confidence            578899999999999 88777  99999854321        1111 233568999999999999999999998776666


Q ss_pred             EEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CC----CceEEEeCCeeCCC
Q psy15128        123 RAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PP----PHIRWYKNGNSLPP  179 (292)
Q Consensus       123 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~----~~~~W~~~~~~l~~  179 (292)
                      .+.|.|..    +|....+.+.  ...+|+.+ |.|.+.+. |.    +.+.|+|++.+|..
T Consensus        88 ~~~ltV~~----~P~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~  142 (210)
T 1gsm_A           88 TVQLLVYA----FPNQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEG  142 (210)
T ss_dssp             EEEEEEEB----CCSEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTT
T ss_pred             EEEEEEEe----cCCCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEccc
Confidence            67777763    2333333332  56678888 99999875 63    47999999999865

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.68  E-value=2.4e-17  Score=120.20  Aligned_cols=140  Identities=11%  Similarity=0.105  Sum_probs=89.5

Q ss_pred             CCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCeeCCCCCcc--EE-EcCCCcEEEEeeecCCCCCC-----
Q psy15128        134 TPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTR--IN-VSSSGSLQIDVLRDDFRAEP-----  205 (292)
Q Consensus       134 ~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~~--~~-~~~~~~l~i~~~~~~d~g~~-----  205 (292)
                      .++|.+...|. ..+.+|+.++|.|.+. .+.+.+.|+|+|..+......  .. ....+.|.|.++..+|+|.|     
T Consensus         6 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~   83 (201)
T 1nkr_A            6 HRKPSLLAHPG-PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGS   83 (201)
T ss_dssp             -CCCEEEEESC-SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCeEEEEcC-CccCCCCcEEEEEecc-CCCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEe
Confidence            45666666665 6688999999999996 467789999998765421000  00 01123566666666665511     


Q ss_pred             -------------------------------cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCC
Q psy15128        206 -------------------------------KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP  254 (292)
Q Consensus       206 -------------------------------~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~  254 (292)
                                                     +...+.+|+.++|.|.+ .+ +.+.|.|+|+|..+.... ........ 
T Consensus        84 ~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~~~~-~~~~~~~~-  159 (201)
T 1nkr_A           84 VTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSS-RS-SYDMYHLSREGEAHERRL-PAGPKVNG-  159 (201)
T ss_dssp             BTTBTTCCCCCCCCEEEEEECSSCCCEEEEESCSEECTTCEEEEEEEE-SS-CCSEEEEEETTCSSCEEE-ECEEEETT-
T ss_pred             cCCCCccccCCCCCEEEEeeccCCCCceecCCCCccCCCCeEEEEEeC-CC-CCceEEEEECCcccCccc-ccccccCC-
Confidence                                           11246789999999997 54 567999999998763211 01111111 


Q ss_pred             ccccccccccccccccccccceeEEEEeecc
Q psy15128        255 WFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       255 ~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                          .....|.|..++  |+|.|+|.|.+..
T Consensus       160 ----~~~~~L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          160 ----TFQADFPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             ----EEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred             ----ceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence                012357788887  9999999999753

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.68  E-value=1.1e-16  Score=117.70  Aligned_cols=119  Identities=17%  Similarity=0.151  Sum_probs=86.7

Q ss_pred             cccCCcCCCeeEEEEEEeccc-ccccccEEEEEe----CCCcEEeCCCccEEecCCcEEEEEEEeee--CCCeeEEEECC
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVG-ERETKPALLTVH----APPSFVVRPQDQKVGLNGIASFQCVAEGS--PLPSVFWTQEG   74 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~-~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~   74 (292)
                      |.+++.+|+|.|+|.+.+..+ ......+.|.|.    .+|.+...+....+..|+.++|.|.+.+.  |.+.+.|++++
T Consensus        72 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g  151 (211)
T 3tv3_L           72 VSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADS  151 (211)
T ss_dssp             EESCCGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             ECCCChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECC
Confidence            789999999999999999876 234444888888    56777766655555689999999999885  35789999999


Q ss_pred             eEEeeccCC----CcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         75 SQVLMFPGN----AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        75 ~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      ..+......    ......+.....|.|.++..+|.|.|+|.+.|..+..
T Consensus       152 ~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~  201 (211)
T 3tv3_L          152 SPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV  201 (211)
T ss_dssp             EEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEE
T ss_pred             eecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCE
Confidence            876320000    0001112223579999999999999999999976543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.67  E-value=8.9e-17  Score=127.24  Aligned_cols=120  Identities=19%  Similarity=0.282  Sum_probs=92.6

Q ss_pred             cccCCcCCCe-eEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeec
Q psy15128          2 ITEVKKSDEG-KYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMF   80 (292)
Q Consensus         2 i~~v~~~D~G-~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~   80 (292)
                      |.+++.+|+| .|+|.+.+..|..... +.|.|..+|.+    ......+|+.++|.|.+.|.|.|.+.|++++..+.. 
T Consensus       216 i~~v~~~D~G~~Y~C~a~n~~g~~~~~-~~l~V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~-  289 (347)
T 2ifg_A          216 LANVTSDLNRKNVTCWAENDVGRAEVS-VQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNE-  289 (347)
T ss_dssp             EESCCSTTTTCCEEECCEETTEECCEE-ECCCCBEEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETTEECCC-
T ss_pred             EeeCChHHCCCeEEEEEEcCCCCEEEE-EEEEEcCCCee----eeccCccCceEEEEEEeeecCCCcEEEEeCCEECCC-
Confidence            6789999999 9999999998877555 78888777775    112245789999999999999999999999987641 


Q ss_pred             cCCCcceeE--------EeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128         81 PGNAYGHLH--------VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus        81 ~~~~~~~~~--------~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                        .......        ....+.|.|.+++.+|+|.|+|.|.|..|.....+.+.|.
T Consensus       290 --~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  344 (347)
T 2ifg_A          290 --TSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM  344 (347)
T ss_dssp             --CSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSC
T ss_pred             --CcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEec
Confidence              1111111        1225679999999999999999999999877766666553

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.67  E-value=3.4e-16  Score=115.12  Aligned_cols=118  Identities=18%  Similarity=0.166  Sum_probs=82.7

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEe----CCCcEEeCCCccEEecCCcEEEEEEEeeeCCC--eeEEEECCe
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH----APPSFVVRPQDQKVGLNGIASFQCVAEGSPLP--SVFWTQEGS   75 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~v~W~~~~~   75 (292)
                      |.+++.+|+|.|+|.+.+..+......+.|.|.    .+|.+...+....+..|+.++|.|.+.+.+++  .+.|++++.
T Consensus        77 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~  156 (212)
T 1q0x_L           77 ITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGT  156 (212)
T ss_dssp             ESSCCGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             ECCCCccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCE
Confidence            789999999999999998765444344677774    45666655544445578999999999885433  899999998


Q ss_pred             EEeeccCC----CcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         76 QVLMFPGN----AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        76 ~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      .+......    ............|.|.++..+|.|.|+|.+.|....
T Consensus       157 ~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (212)
T 1q0x_L          157 PVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS  204 (212)
T ss_dssp             EECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred             eCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcc
Confidence            76311000    000011223347899999999999999999987543

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.67  E-value=4.6e-16  Score=117.28  Aligned_cols=126  Identities=15%  Similarity=0.232  Sum_probs=83.8

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEee-eCCC-eeEEEECCeEEee
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEG-SPLP-SVFWTQEGSQVLM   79 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~~~~~~~   79 (292)
                      |.+++.+|+|.|+|.+.+..+..... +.|.|..+|.+...+. .....|+.+.|.|.+.+ .|.+ .+.|++++..+..
T Consensus        86 I~~v~~~D~G~Y~C~~~~~~~~~~~~-~~L~V~~~P~v~~~~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~  163 (248)
T 3pv7_A           86 LPGIQLEEAGEYRCEVVVTPLKAQGT-VQLEVVASPASRLLLD-QVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPH  163 (248)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEEEE-EEEEEEBCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSSCS
T ss_pred             eCCCCHHHCeEEEEEEEeCCccceeE-EEEEEecCCceEEecC-CccccCCCcEEEEEEccEECCCeEEEEEECCccCCC
Confidence            78899999999999999887665555 8999999888776654 33456778889999998 6888 9999998853210


Q ss_pred             c----cC------CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128         80 F----PG------NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus        80 ~----~~------~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      .    ..      .............|.|.....+|.|.|+|.+.|..+.......+.+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~  223 (248)
T 3pv7_A          164 PIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLT  223 (248)
T ss_dssp             CEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC-
T ss_pred             ccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEE
Confidence            0    00      00001112234578899999999999999999988775554444443

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.67  E-value=4e-16  Score=116.72  Aligned_cols=124  Identities=17%  Similarity=0.225  Sum_probs=87.5

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEe---CCCcEEeCCCccEEecCCcEEEEEEEeee-C-CCeeEEEECCeE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH---APPSFVVRPQDQKVGLNGIASFQCVAEGS-P-LPSVFWTQEGSQ   76 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~   76 (292)
                      |.+++.+|+|.|+|.+.+..+......+.|.|.   .+|.+...+....+.+|+.++|.|.+.+. | .+.+.|++++..
T Consensus        98 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~  177 (237)
T 3sob_L           98 ISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL  177 (237)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             ECCCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCC
Confidence            789999999999999988665444444677774   45666655555555678899999999884 4 579999999987


Q ss_pred             Eeec-----cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEE
Q psy15128         77 VLMF-----PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF  125 (292)
Q Consensus        77 ~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~  125 (292)
                      +...     .........+.....|.|.....+|.|.|+|.+.|..........
T Consensus       178 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~  231 (237)
T 3sob_L          178 QSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKS  231 (237)
T ss_dssp             CCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEE
T ss_pred             CCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCceeee
Confidence            6321     001111112233457899999999999999999998765544443

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.67  E-value=9e-17  Score=104.14  Aligned_cols=78  Identities=27%  Similarity=0.438  Sum_probs=63.9

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +.+..+.+|+.+.|.|.+ .|.|.+.+.|++||+.|.  .+.++.+..++     ....|.|..+..+|+|.|+|+|+|.
T Consensus        20 p~~~~v~~G~~~~l~C~~-~G~P~p~v~W~k~g~~l~--~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~   91 (107)
T 3knb_B           20 PRPVRVVSGAEAELKCVV-LGEPPPVVVWEKGGQQLA--ASERLSFPADG-----AEHGLLLTAALPTDAGVYVCRARNA   91 (107)
T ss_dssp             CCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECC--CCSSEECCEET-----TEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCcEEEeCCCcEEEEEEE-EEecCCEEEEEECccccc--ceeeEEEeecC-----ceEEEEEecCChhhCEEEEEEEEEC
Confidence            456789999999999998 899999999999999996  34444443332     1236889999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      +|+++.
T Consensus        92 ~G~~~~   97 (107)
T 3knb_B           92 AGEAYA   97 (107)
T ss_dssp             TEEEEE
T ss_pred             CCEEEE
Confidence            998764

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.67  E-value=1.9e-15  Score=111.75  Aligned_cols=132  Identities=15%  Similarity=0.253  Sum_probs=87.4

Q ss_pred             CccEEecCCcEEEEEEEeeeC--CCeeEEEECC--eE---Eeecc---------CCCcceeEEee-----ecEEEEccCC
Q psy15128         44 QDQKVGLNGIASFQCVAEGSP--LPSVFWTQEG--SQ---VLMFP---------GNAYGHLHVTQ-----EGTLRIQGVQ  102 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~---~~~~~---------~~~~~~~~~~~-----~~~l~i~~~~  102 (292)
                      ....+.+|++++|.|.+.+.+  .+.+.|+|..  ..   +....         .....++....     ...|+|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (220)
T 2fbj_H            8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR   87 (220)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred             CCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCC
Confidence            456788999999999998754  5689999853  11   11110         11123444332     3489999999


Q ss_pred             CCCCeEEEEEEEeCCcC---eeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CC--CceEEEeCCee
Q psy15128        103 KEDAGFFVCSALSVAGS---TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PP--PHIRWYKNGNS  176 (292)
Q Consensus       103 ~~d~g~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~--~~~~W~~~~~~  176 (292)
                      .+|+|.|.|.+.+..+.   ......|.|.... ..+|.+...+ ...+..|+.++|.|.+.+. |.  +.+.|++++..
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~-~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~  165 (220)
T 2fbj_H           88 SEDTALYYCARLHYYGYNAYWGQGTLVTVSAES-ARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKD  165 (220)
T ss_dssp             GGGCEEEEEEEEETTTEEEEECCCEEEEECSSC-CBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSS
T ss_pred             hhhCEEEEEEEeccccccceecCCEEEEecCCC-CCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEe
Confidence            99999999999886432   1122355554311 1234444433 3346789999999999876 65  68999999876


Q ss_pred             C
Q psy15128        177 L  177 (292)
Q Consensus       177 l  177 (292)
                      +
T Consensus       166 ~  166 (220)
T 2fbj_H          166 I  166 (220)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.67  E-value=1.2e-15  Score=114.35  Aligned_cols=139  Identities=22%  Similarity=0.364  Sum_probs=89.6

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--------------eEEeeccCCCcceeEEee----ecEEEEcc
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--------------SQVLMFPGNAYGHLHVTQ----EGTLRIQG  100 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--------------~~~~~~~~~~~~~~~~~~----~~~l~i~~  100 (292)
                      +...+..+.+.+|++++|.|.+.+ +.+.+.|+|..              ....  ......+.....    ...|.|.+
T Consensus         5 v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~sL~I~~   81 (240)
T 3q5y_A            5 VVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERD--KGFLPSRFSVQQFDDYHSEMNMSA   81 (240)
T ss_dssp             CEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEE--ECSCCTTEEEEECTTSCEEEEECS
T ss_pred             cccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCcccc--CcccCCeEEEEeCCCCEEEEEECc
Confidence            444566678999999999999865 67799999821              1111  111112333322    34799999


Q ss_pred             CCCCCCeEEEEEEEeCCc---CeeEEEEEEEEee-cCCCCCeEE-eCCCCceecCCCeEEEEeEecc-CCCC-ceEEEeC
Q psy15128        101 VQKEDAGFFVCSALSVAG---STTVRAFLQVTSV-EDTPPPIVQ-VGPSNQTLPLHSVAFLPCQAVG-SPPP-HIRWYKN  173 (292)
Q Consensus       101 ~~~~d~g~Y~C~~~~~~~---~~~~~~~l~v~~~-~~~~~~~~~-~~~~~~~~~~g~~v~l~C~~~~-~p~~-~~~W~~~  173 (292)
                      ++.+|+|.|+|.+.+...   .......+.|... ....+|.+. ..+....+..|+.++|.|.+.+ .|.+ .+.|+++
T Consensus        82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~  161 (240)
T 3q5y_A           82 LELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN  161 (240)
T ss_dssp             CCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             CChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEEC
Confidence            999999999999973211   1122334555421 111233333 3445455667999999999987 4555 6899999


Q ss_pred             CeeCCCC
Q psy15128        174 GNSLPPE  180 (292)
Q Consensus       174 ~~~l~~~  180 (292)
                      |.++...
T Consensus       162 g~~l~~~  168 (240)
T 3q5y_A          162 GKEVHSG  168 (240)
T ss_dssp             TEEECTT
T ss_pred             CEECcCc
Confidence            9988653

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.66  E-value=1.2e-16  Score=121.86  Aligned_cols=165  Identities=19%  Similarity=0.273  Sum_probs=76.5

Q ss_pred             ccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEE-eCCCccEEecCCcEEEEEEEeee-CCC--eeEEEECCeEEe
Q psy15128          3 TEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFV-VRPQDQKVGLNGIASFQCVAEGS-PLP--SVFWTQEGSQVL   78 (292)
Q Consensus         3 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~-~~~--~v~W~~~~~~~~   78 (292)
                      .+++.  .|.|+|++.. .+......+.|.|..+|... +.+....+.+|+.++|.|.+.+. |..  .|.|+|++..+.
T Consensus        55 ~~v~~--~~~y~C~~~~-~~~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~  131 (291)
T 1mq8_A           55 SNVQE--DSQPMCYSNC-PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELK  131 (291)
T ss_dssp             ESCCS--CCCCEEEEEC-SSCEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEE
T ss_pred             Eeccc--CCeEEEEEEc-CCccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEee
Confidence            44542  3679999964 34445454889998877543 33344558889999999999875 444  589999998775


Q ss_pred             eccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC--------eeEEEEEEEEeecCCCCCeEEeCCCCceecC
Q psy15128         79 MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS--------TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPL  150 (292)
Q Consensus        79 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~--------~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~  150 (292)
                      ......     ......|.+.....+|.+.|+|+|.+..+.        ......|.|..... ..+.+.. +  ..+.+
T Consensus       132 ~~~~~~-----~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~-~~~~~~~-p--~~l~e  202 (291)
T 1mq8_A          132 REPAVG-----EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPA-TPPQLVS-P--RVLEV  202 (291)
T ss_dssp             EEECCB-----TTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC----------------------
T ss_pred             cccCCC-----CCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCC-CCceecC-C--cCccC
Confidence            332110     112346777777777778999999986442        12223344432100 0011211 2  25779


Q ss_pred             CCeEEEEeEeccCCCC---ceEEEeCCeeCCC
Q psy15128        151 HSVAFLPCQAVGSPPP---HIRWYKNGNSLPP  179 (292)
Q Consensus       151 g~~v~l~C~~~~~p~~---~~~W~~~~~~l~~  179 (292)
                      |+.++|.|.+.+++++   .+.|+++|..+..
T Consensus       203 G~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~  234 (291)
T 1mq8_A          203 DTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP  234 (291)
T ss_dssp             --------------------------------
T ss_pred             CCeEEEEEEcCCCCCCcccEEEEEECCEecCc
Confidence            9999999999988554   5999999998865

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.66  E-value=5.3e-16  Score=116.08  Aligned_cols=108  Identities=16%  Similarity=0.210  Sum_probs=80.3

Q ss_pred             cccCCcCCCeeEEEEEEecccc-cccccEEEEEeC---CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGE-RETKPALLTVHA---PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQV   77 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~   77 (292)
                      |.+++.+|+|.|+|.+.+..+. ..+..+.|.|..   +|.+...+ ...+.+|++++|.|.+.+. .+.+.|+|++..+
T Consensus        64 I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~  141 (242)
T 1p6f_A           64 IPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSS  141 (242)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSC
T ss_pred             ecCCCcccCeEEEEEEecCCccccCCcceEEEeecccCCCceEccC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCcc
Confidence            6789999999999999875432 234447888874   45555544 4568899999999998654 4589999998755


Q ss_pred             eeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         78 LMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      ..      ..........|.|.+++.+|+|.|+|.+.+..
T Consensus       142 ~~------~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~  175 (242)
T 1p6f_A          142 HV------QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN  175 (242)
T ss_dssp             EE------EEEECSSEEEEEEEECCGGGCEEEEEEEEEET
T ss_pred             Cc------cccCCCceEEEEeCCCccccCEEEEEEEECCC
Confidence            32      01112335689999999999999999998753

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.66  E-value=2.5e-15  Score=111.64  Aligned_cols=135  Identities=16%  Similarity=0.261  Sum_probs=83.0

Q ss_pred             CCCccEEecCCcEEEEEEEeeeC--CCeeEEEECC--eEEe----ecc-C-------CCcceeEEe-----eecEEEEcc
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGSP--LPSVFWTQEG--SQVL----MFP-G-------NAYGHLHVT-----QEGTLRIQG  100 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~~----~~~-~-------~~~~~~~~~-----~~~~l~i~~  100 (292)
                      .+....+.+|++++|.|.+.+.+  .+.+.|+|+.  ....    ... +       ....+....     ....|.|.+
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (227)
T 1mju_H            6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS   85 (227)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECC
Confidence            34556788999999999998765  5789999863  2111    010 0       012334333     235899999


Q ss_pred             CCCCCCeEEEEEEEeCCcCe-eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC-ceEEEeCCeeC
Q psy15128        101 VQKEDAGFFVCSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP-HIRWYKNGNSL  177 (292)
Q Consensus       101 ~~~~d~g~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~~~W~~~~~~l  177 (292)
                      ++.+|+|.|.|.+.+..... .....|.|.... ..+|.+........+..|+.++|.|.+.+. |.+ .+.|++++..+
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~-~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  164 (227)
T 1mju_H           86 LTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAK-TTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSS  164 (227)
T ss_dssp             CCGGGCEEEEEEEEETTEEEECCCEEEEECSSC-CBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             CCcccCEEEEEEECCCCceEEcCcEEEEEcCCC-CCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcC
Confidence            99999999999998753211 122345554211 123333332222346689999999999875 666 89999998765

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.66  E-value=6.7e-16  Score=115.04  Aligned_cols=113  Identities=23%  Similarity=0.332  Sum_probs=82.3

Q ss_pred             cccCCcCCCeeEEEEEEecc-cccccccEEEEEeCCC---cEEeCCCccEEecCCcE-EEEEEE-eeeCCCeeEEEECCe
Q psy15128          2 ITEVKKSDEGKYQCYVQNMV-GERETKPALLTVHAPP---SFVVRPQDQKVGLNGIA-SFQCVA-EGSPLPSVFWTQEGS   75 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~-~~~~~~~~~l~v~~~p---~~~~~~~~~~~~~g~~~-~l~C~~-~~~~~~~v~W~~~~~   75 (292)
                      |.+++.+|+|.|+|.+.+.. +..... +.|.|..+|   .+...+....+.+|+.+ .|.|.+ .+.|.+.+.|++++.
T Consensus        81 i~~v~~~D~G~Y~C~~~~~~~~~~~~~-~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~  159 (231)
T 2pet_A           81 LAEAQVGDERDYVCVVRAGAAGTAEAT-ARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQ  159 (231)
T ss_dssp             ESSCCGGGCEEEEEEEECGGGCEEEEE-EEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTE
T ss_pred             EcccCcccCceEEEEEEecCCCceEEE-EEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCc
Confidence            77999999999999999886 444444 888888764   44455555667788888 999999 888999999999998


Q ss_pred             EEeeccCCCcceeEEe------------eecEEEEccCCCCCCeEEEEEEEeC
Q psy15128         76 QVLMFPGNAYGHLHVT------------QEGTLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        76 ~~~~~~~~~~~~~~~~------------~~~~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                      .+...... ..+....            ..+.|.|.....+|.|.|+|.|.|.
T Consensus       160 ~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          160 RLEVPVEM-NPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             ECCCCSSC-CSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             cCcccccc-ccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            76432200 0111111            1256888866666799999999984

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.66  E-value=6.8e-16  Score=116.80  Aligned_cols=115  Identities=21%  Similarity=0.305  Sum_probs=84.9

Q ss_pred             cccCCcCCCeeEEEEEEecccc----cccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCC-----eeEEEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGE----RETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLP-----SVFWTQ   72 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~----~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-----~v~W~~   72 (292)
                      |.+++++|+|.|+|.+.+..+.    .....+.|.|..+|.+...+....+.+|++++|.|.+.+.|.+     .+.|+|
T Consensus        83 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k  162 (256)
T 1nqb_A           83 LSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYL  162 (256)
T ss_dssp             ECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEE
T ss_pred             ECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEE
Confidence            7899999999999999987552    2223378889888877777777889999999999999887654     899999


Q ss_pred             --CCeEEee--c-c----CCCcceeEEe---eecEEEEccCCCCCCeEEEEEEEeC
Q psy15128         73 --EGSQVLM--F-P----GNAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        73 --~~~~~~~--~-~----~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                        ++..+..  . .    .....++...   ....|.|.+++.+|+|.|+|.+.+.
T Consensus       163 ~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  218 (256)
T 1nqb_A          163 QKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSH  218 (256)
T ss_dssp             ECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             ECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccC
Confidence              4543311  0 0    0011222221   2347999999999999999999874

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.66  E-value=6.2e-16  Score=116.35  Aligned_cols=140  Identities=21%  Similarity=0.332  Sum_probs=89.9

Q ss_pred             cEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEEC--------------CeEEeeccCCCcceeEEee----ecEEEEc
Q psy15128         38 SFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE--------------GSQVLMFPGNAYGHLHVTQ----EGTLRIQ   99 (292)
Q Consensus        38 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~--------------~~~~~~~~~~~~~~~~~~~----~~~l~i~   99 (292)
                      .+...+..+.+.+|++++|.| ..+.+.+.+.|+|.              +.... .......+.....    ...|.|.
T Consensus         4 ~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~sL~I~   81 (245)
T 4ei6_B            4 KVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVME-KSKLFKDQFSVERPDGSYFTLKIQ   81 (245)
T ss_dssp             CCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEE-ECTTCCTTEEEECCTTSCEEEEEC
T ss_pred             ceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceec-cCCCccCCEEEEeccCceEEEEEC
Confidence            344556677899999999999 55667889999982              11111 1110002333322    3389999


Q ss_pred             cCCCCCCeEEEEEEEeCC----cCeeEEEEEEEEeec-C-CCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC-ceEEE
Q psy15128        100 GVQKEDAGFFVCSALSVA----GSTTVRAFLQVTSVE-D-TPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP-HIRWY  171 (292)
Q Consensus       100 ~~~~~d~g~Y~C~~~~~~----~~~~~~~~l~v~~~~-~-~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~~~W~  171 (292)
                      +++.+|+|.|+|.+.+..    ........+.|.... . .++.+....+....+.+|+.++|.|.+.+. |.+ .+.|+
T Consensus        82 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~  161 (245)
T 4ei6_B           82 PTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  161 (245)
T ss_dssp             SCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             CCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEE
Confidence            999999999999998532    112223345554211 1 123333444555556679999999999874 444 79999


Q ss_pred             eCCeeCCC
Q psy15128        172 KNGNSLPP  179 (292)
Q Consensus       172 ~~~~~l~~  179 (292)
                      ++|..+..
T Consensus       162 ~~g~~l~~  169 (245)
T 4ei6_B          162 VNGKEVHS  169 (245)
T ss_dssp             ETTEEECT
T ss_pred             ECCEECCC
Confidence            99998865

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.66  E-value=2.1e-15  Score=111.59  Aligned_cols=132  Identities=16%  Similarity=0.362  Sum_probs=84.6

Q ss_pred             CCccEEecCCcEEEEEEEeee--CCCeeEEEECC--eEE--e-eccC-----------CCcceeEEeee-----cEEEEc
Q psy15128         43 PQDQKVGLNGIASFQCVAEGS--PLPSVFWTQEG--SQV--L-MFPG-----------NAYGHLHVTQE-----GTLRIQ   99 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~--~~~--~-~~~~-----------~~~~~~~~~~~-----~~l~i~   99 (292)
                      +....+.+|++++|.|.+.+.  +.+.+.|+|..  ...  . ....           ....+.....+     ..|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   86 (221)
T 3m8o_H            7 SGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMN   86 (221)
T ss_dssp             ESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEEC
T ss_pred             cCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEEC
Confidence            345668899999999999864  35689999842  111  1 0000           01233433322     269999


Q ss_pred             cCCCCCCeEEEEEEEeCC--cCeeEEEEEEEEeecCCCCCeEE-eCCCCceecCCCeEEEEeEecc-CCC--CceEEEeC
Q psy15128        100 GVQKEDAGFFVCSALSVA--GSTTVRAFLQVTSVEDTPPPIVQ-VGPSNQTLPLHSVAFLPCQAVG-SPP--PHIRWYKN  173 (292)
Q Consensus       100 ~~~~~d~g~Y~C~~~~~~--~~~~~~~~l~v~~~~~~~~~~~~-~~~~~~~~~~g~~v~l~C~~~~-~p~--~~~~W~~~  173 (292)
                      +++.+|+|.|.|.+.+..  ........+.|.... ..+|.+. ..+...  .+|+.++|.|.+.+ .|.  +.+.|+++
T Consensus        87 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~-~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W~~~  163 (221)
T 3m8o_H           87 SLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSAS-PTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTWSES  163 (221)
T ss_dssp             SCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCC-CBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEESCC
T ss_pred             CCCHHHCEEEEEEEECCChhheECCCEEEEEecCC-CCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEEEEC
Confidence            999999999999998753  122223445554221 2233343 333333  78999999999987 565  48999999


Q ss_pred             CeeC
Q psy15128        174 GNSL  177 (292)
Q Consensus       174 ~~~l  177 (292)
                      +..+
T Consensus       164 g~~~  167 (221)
T 3m8o_H          164 GQGV  167 (221)
T ss_dssp             STTC
T ss_pred             CEEC
Confidence            8776

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.65  E-value=7.5e-17  Score=115.99  Aligned_cols=106  Identities=14%  Similarity=0.221  Sum_probs=74.5

Q ss_pred             ccc-CCcCCCeeEEEEEEecccccccccEEEEEeC--CCcE----------------E----eCCCc---cEEecCCcEE
Q psy15128          2 ITE-VKKSDEGKYQCYVQNMVGERETKPALLTVHA--PPSF----------------V----VRPQD---QKVGLNGIAS   55 (292)
Q Consensus         2 i~~-v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~--~p~~----------------~----~~~~~---~~~~~g~~~~   55 (292)
                      |.+ ++.+|+|.|+|.+.|..|..... +.+.|..  ++..                .    .....   ..+.+|+.+.
T Consensus        48 I~~~~~~~D~G~Y~C~a~n~~g~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~  126 (186)
T 1jbj_A           48 LQDFSEVEDSGYYVCYTPASNKNTYLY-LKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVL  126 (186)
T ss_dssp             EESCCTTTSCEEEEEECSSCCCCCCEE-ECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEE
T ss_pred             ECCCCccccCEEEEEEEEeCCCcEEEE-EEEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEE
Confidence            678 99999999999999987763322 3333322  1110                0    00001   1233899999


Q ss_pred             EEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        56 l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      |.|.+   |.+.+.|+|++..+....         ...+.|.|.++..+|+|.|+|.|.|..+..
T Consensus       127 l~C~~---p~p~i~W~k~g~~i~~~~---------~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          127 LTCGL---TDKTIKWLKDGSIISPLN---------ATKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             EECSS---SCSCEEEEETTEECCCSS---------CCSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             EEeeC---CCCeEEEEECCEECcccC---------CCcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            99988   788999999998763111         135689999999999999999999876643

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.65  E-value=3.3e-16  Score=115.68  Aligned_cols=119  Identities=18%  Similarity=0.273  Sum_probs=82.8

Q ss_pred             cccCCcCCCeeEEEEEEeccc----ccccccEEEEEe----CCCcEEeCCCccEEecCCcEEEEEEEee-eCCC-eeEEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVG----ERETKPALLTVH----APPSFVVRPQDQKVGLNGIASFQCVAEG-SPLP-SVFWT   71 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~----~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~   71 (292)
                      |.+++.+|+|.|+|.+.+..+    ......+.|.|.    .+|.+...+.......|+.++|.|.+.+ .|.+ .+.|+
T Consensus        79 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~  158 (218)
T 3s96_B           79 ISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWK  158 (218)
T ss_dssp             ESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEE
Confidence            789999999999999998765    223333788887    4566665555555667889999999988 4666 89999


Q ss_pred             ECCeEEeeccCCCc---ceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         72 QEGSQVLMFPGNAY---GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        72 ~~~~~~~~~~~~~~---~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      +++..+........   ....+...+.|.|.....+|.|.|+|.+.|..+..
T Consensus       159 k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~  210 (218)
T 3s96_B          159 ANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTV  210 (218)
T ss_dssp             ETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEE
T ss_pred             ECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcc
Confidence            99987642110000   01112223458888888899999999999986543

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.65  E-value=1.7e-15  Score=110.37  Aligned_cols=115  Identities=20%  Similarity=0.283  Sum_probs=77.5

Q ss_pred             cccCCcCCCeeEEEEEEeccccccc----ccEEEEEeCC---CcEEeCCCccEEecCCcEEEEEEEe-eeCCCeeEEEEC
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERET----KPALLTVHAP---PSFVVRPQDQKVGLNGIASFQCVAE-GSPLPSVFWTQE   73 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~----~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~   73 (292)
                      |.+++.+|+|.|+|.+.+..+....    ..+.|.|..+   |.+...    ....|+.+.|.|.+. +.|.|.+.|+++
T Consensus        69 I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~----~~~~g~~~~l~C~~~~g~P~p~i~W~k~  144 (201)
T 1dr9_A           69 ILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDF----EIPTSNIRRIICSTSGGFPEPHLSWLEN  144 (201)
T ss_dssp             ECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEE----ECSSTTEEEEEEEEEEESSCEEEEEEES
T ss_pred             EecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCCCCCCceEec----cCCCCCeEEEEEecCCccCCCEEEEEEC
Confidence            7899999999999999997665432    3377777765   333221    113478899999995 889999999999


Q ss_pred             CeEEeeccCCCcceeEEeee-cE---EEEccCCCCCCeEEEEEEEeCCcCeeEEE
Q psy15128         74 GSQVLMFPGNAYGHLHVTQE-GT---LRIQGVQKEDAGFFVCSALSVAGSTTVRA  124 (292)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~-~~---l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~  124 (292)
                      +..+...    ......... +.   ..+..+..+|.|.|+|.|.|..+......
T Consensus       145 g~~l~~~----~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~  195 (201)
T 1dr9_A          145 GEELNAI----NTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTF  195 (201)
T ss_dssp             SCEECCS----EEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEE
T ss_pred             CEECccc----cceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEE
Confidence            8776411    111111111 11   12234456899999999999887665443

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.65  E-value=1.4e-15  Score=110.08  Aligned_cols=106  Identities=13%  Similarity=0.181  Sum_probs=75.9

Q ss_pred             CcccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcE---EeCCCccEEecCC-cEEEEEEEeee-CCCeeEEEECCe
Q psy15128          1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSF---VVRPQDQKVGLNG-IASFQCVAEGS-PLPSVFWTQEGS   75 (292)
Q Consensus         1 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~---~~~~~~~~~~~g~-~~~l~C~~~~~-~~~~v~W~~~~~   75 (292)
                      .|.+++.+|+|.|+|.+.+..+..... +.|.|..++..   ...+  .....|. .++|.|.+.+. |.+.+.|++++.
T Consensus        73 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~-~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~  149 (193)
T 2if7_A           73 QLSNLKMEDTGSYRAQISTKTSAKLSS-YTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGN  149 (193)
T ss_dssp             EECSCCGGGCEEEEEEEECSSCEEEEE-EEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTE
T ss_pred             EECCCCcccCceEEEEEEecCCCeEEE-EEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCE
Confidence            378999999999999999887765544 88888876432   2222  1223454 79999999884 578999999987


Q ss_pred             EEeeccCCCcceeEEeeecEEEEccCCCC-CCeEEEEEEEeCCcCeeE
Q psy15128         76 QVLMFPGNAYGHLHVTQEGTLRIQGVQKE-DAGFFVCSALSVAGSTTV  122 (292)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~g~Y~C~~~~~~~~~~~  122 (292)
                      .+.             ....|.|.....+ |.|.|+|.|.|..+....
T Consensus       150 ~l~-------------~~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~  184 (193)
T 2if7_A          150 TLS-------------SQPNLTVSWDPRISSEQDYTCIAENAVSNLSF  184 (193)
T ss_dssp             EEE-------------SSSEEEEEECTTTCSCCEEEEEEEETTEEEEE
T ss_pred             EcC-------------CCCeEEEEeccCcCCCCcEEEEEECCCCcccc
Confidence            542             1234666544444 899999999998876543

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.65  E-value=1.7e-14  Score=106.84  Aligned_cols=135  Identities=16%  Similarity=0.270  Sum_probs=87.9

Q ss_pred             CccEEecCCcEEEEEEEeeeC--CCeeEEEECC--e--E-Eeec-c--------CCCcceeEEee-----ecEEEEccCC
Q psy15128         44 QDQKVGLNGIASFQCVAEGSP--LPSVFWTQEG--S--Q-VLMF-P--------GNAYGHLHVTQ-----EGTLRIQGVQ  102 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~--~-~~~~-~--------~~~~~~~~~~~-----~~~l~i~~~~  102 (292)
                      ....+.+|++++|.|.+.+.+  .+.+.|+|..  .  . +... .        .....++....     ...|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (223)
T 1dee_B            8 GGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   87 (223)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCC
Confidence            466788999999999998754  4689999853  1  1 1111 0        11123444432     3489999999


Q ss_pred             CCCCeEEEEEEEeCCc---C---eeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC-ceEEEe-C
Q psy15128        103 KEDAGFFVCSALSVAG---S---TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP-HIRWYK-N  173 (292)
Q Consensus       103 ~~d~g~Y~C~~~~~~~---~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~~~W~~-~  173 (292)
                      .+|+|.|.|.+.+..+   .   ......|.|.... ..+|.+...+....+..|+.++|.|.+.+. |.+ .+.|++ +
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~-~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~  166 (223)
T 1dee_B           88 AEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGS-ASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKN  166 (223)
T ss_dssp             GGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSC-CBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             HHHCEEEEEEEeccccCcccceeecCcEEEEEccCC-CCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccC
Confidence            9999999999987642   1   1122355554211 123333322222335789999999999877 766 899999 8


Q ss_pred             CeeCCC
Q psy15128        174 GNSLPP  179 (292)
Q Consensus       174 ~~~l~~  179 (292)
                      |..+..
T Consensus       167 g~~l~~  172 (223)
T 1dee_B          167 NSDISS  172 (223)
T ss_dssp             SCBCSC
T ss_pred             CCccce
Confidence            887754

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.65  E-value=1e-15  Score=115.36  Aligned_cols=162  Identities=14%  Similarity=0.162  Sum_probs=81.8

Q ss_pred             cccCCcCCCeeEEEEEEeccc----ccccccEEEEEeC---CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVG----ERETKPALLTVHA---PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG   74 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~----~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~   74 (292)
                      |.+++.+|+|.|+|.+.+...    ...+..+.|.|..   +|.+...+. ..+.+|++++|.|.+.+. .+.+.|+|++
T Consensus        66 I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~-~~~~~w~k~g  143 (257)
T 1b6u_A           66 IGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSS-YDMYHLSREG  143 (257)
T ss_dssp             ECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSC-CSEEEEEETT
T ss_pred             eecCCcccCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCC-CcEEEEEECC
Confidence            778999999999999986432    2234447788864   355555554 467899999999998765 4689999998


Q ss_pred             eEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc---Ce--eEEEEEEEEeecCCCCCeEEe-CCCCcee
Q psy15128         75 SQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG---ST--TVRAFLQVTSVEDTPPPIVQV-GPSNQTL  148 (292)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~---~~--~~~~~l~v~~~~~~~~~~~~~-~~~~~~~  148 (292)
                      ..+........ ......+..|.|.+++  |+|.|+|.+.+...   ..  +....|.|..     +|.... .+.....
T Consensus       144 ~~~~~~~~~~~-~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g-----~p~~~~p~~~~~~~  215 (257)
T 1b6u_A          144 EAHERRFSAGP-KVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTG-----NPSNSWPSPTEPSS  215 (257)
T ss_dssp             SSCEECCBCBC-CSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBC-----CC------------
T ss_pred             cccCccccccc-ccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEec-----cCCCCCCCCcccCc
Confidence            76532111000 0000125689999998  99999999986532   11  2223444432     222221 1222335


Q ss_pred             cCCCeEEEEeEeccCCCCceEEEeCC
Q psy15128        149 PLHSVAFLPCQAVGSPPPHIRWYKNG  174 (292)
Q Consensus       149 ~~g~~v~l~C~~~~~p~~~~~W~~~~  174 (292)
                      ..|..+.|.|.+ +.+.+.+.|..-+
T Consensus       216 ~~g~~~~l~~~~-~~~~~~~~~~~~~  240 (257)
T 1b6u_A          216 ETGNPRHLHAAA-EQKLISEEDLNLD  240 (257)
T ss_dssp             --------------------------
T ss_pred             cCCCeEEEEEEE-cchHHHHHHhhhh
Confidence            578889999876 5557778887543

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.65  E-value=5.7e-16  Score=117.09  Aligned_cols=128  Identities=18%  Similarity=0.204  Sum_probs=87.5

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeC---------------CCcEEeCCCccEEecCCcEEEEEEEeeeCCC
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA---------------PPSFVVRPQDQKVGLNGIASFQCVAEGSPLP   66 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~   66 (292)
                      |.+++.+|+|.|+|.+.+..+......+.|.|..               +|.+...+....+.+|++++|.|.+.+.+.+
T Consensus        84 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~  163 (253)
T 3uzq_A           84 LSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDR  163 (253)
T ss_dssp             ECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEE
T ss_pred             eCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCcccc
Confidence            7899999999999999986555434447888874               4566667777889999999999999887765


Q ss_pred             ----eeEEEECC--eEEe--eccC-----CCcceeEEe---eecEEEEccCCCCCCeEEEEEEEeCCcCe-eEEEEEEEE
Q psy15128         67 ----SVFWTQEG--SQVL--MFPG-----NAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSALSVAGST-TVRAFLQVT  129 (292)
Q Consensus        67 ----~v~W~~~~--~~~~--~~~~-----~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~-~~~~~l~v~  129 (292)
                          .+.|+|+.  ....  ....     ....++...   ....|.|.+++.+|+|.|+|.+.+..... .....|.|.
T Consensus       164 ~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~  243 (253)
T 3uzq_A          164 YGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIK  243 (253)
T ss_dssp             TTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEEC
T ss_pred             CCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEc
Confidence                89999842  2111  1000     011222221   13369999999999999999998754322 223345554

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.65  E-value=9.5e-16  Score=114.56  Aligned_cols=147  Identities=17%  Similarity=0.165  Sum_probs=92.9

Q ss_pred             EecCCcEEEEEEEeee---CCC-eeEEEECCeEEeeccCCC---cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         48 VGLNGIASFQCVAEGS---PLP-SVFWTQEGSQVLMFPGNA---YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        48 ~~~g~~~~l~C~~~~~---~~~-~v~W~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      +.+|++++|.|.+.+.   |.+ .+.|+|++..+.......   .....+.....|.|.+++.+|+|.|+|.+.+..+..
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  108 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA  108 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence            6789999999999887   665 899999986553111000   000112334579999999999999999999887754


Q ss_pred             eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CC-CceEEEeCCeeCCCCC-ccEEEcCCCcEEEE
Q psy15128        121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PP-PHIRWYKNGNSLPPED-TRINVSSSGSLQID  195 (292)
Q Consensus       121 ~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~~~W~~~~~~l~~~~-~~~~~~~~~~l~i~  195 (292)
                      .....+... .....+|.+.+.+.......|+.++|.|.+.+. |. ..+.|+++|.++.... .......++++.+.
T Consensus       109 ~~~~~v~~~-~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~~  185 (239)
T 1i1c_A          109 PIEKSISKP-EGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLY  185 (239)
T ss_dssp             CEEEEECCC-SSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEE
T ss_pred             CcEEEEecC-CCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceECCCCCEEEE
Confidence            333222210 111234455444433333458899999999885 44 4799999999875421 11223455555554

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.65  E-value=5.3e-16  Score=114.21  Aligned_cols=115  Identities=17%  Similarity=0.221  Sum_probs=79.8

Q ss_pred             cccCCcCCCeeEEEEEEecccccc---cccEEEEEeCCC---cEEeCCCccEEecCCcEEEEEEEeee----CCCeeEEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERE---TKPALLTVHAPP---SFVVRPQDQKVGLNGIASFQCVAEGS----PLPSVFWT   71 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~---~~~~~l~v~~~p---~~~~~~~~~~~~~g~~~~l~C~~~~~----~~~~v~W~   71 (292)
                      |.+++.+|+|.|+|.+.+..+...   ...+.|.|..++   .+.. +  ..+.+|+.++|.|.+.+.    |.+.+.|+
T Consensus        86 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~--~~~~~G~~v~L~C~~~~~~~~~p~p~v~W~  162 (214)
T 2zg1_A           86 IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-L--EPLESGRPTRLSCSLPGSCEAGPPLTFSWT  162 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC-----CCCCTTCCEEEEEECTTCCSCSSCCEEEEE
T ss_pred             EccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec-C--ccccCCCeEEEEEEeccCCCCCCCceEEEe
Confidence            789999999999999998753221   234888887643   3322 2  236789999999999763    78899999


Q ss_pred             ECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128         72 QEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  127 (292)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~  127 (292)
                      +++....   ..   .  ....+.|.|..+..+|.|.|+|.|.|..+.......+.
T Consensus       163 ~~~~~~~---~~---~--~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~  210 (214)
T 2zg1_A          163 GNALSPL---DP---E--TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQ  210 (214)
T ss_dssp             SSTTSSS---CS---S--CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEE
T ss_pred             CCCCccC---CC---C--ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEE
Confidence            9885421   10   1  13456899999999999999999999765444444443

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.65  E-value=1.9e-15  Score=115.23  Aligned_cols=142  Identities=18%  Similarity=0.327  Sum_probs=91.4

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEEC--CeEEe---e-------ccCCCc-ceeEEee----ecEEEEc
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE--GSQVL---M-------FPGNAY-GHLHVTQ----EGTLRIQ   99 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~--~~~~~---~-------~~~~~~-~~~~~~~----~~~l~i~   99 (292)
                      +.+...+....+.+|++++|.|.+. .+.+.+.|+|.  +....   .       ...... .+.....    +..|.|.
T Consensus        27 ~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~  105 (268)
T 3pl6_D           27 AGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQ  105 (268)
T ss_dssp             SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEEC
T ss_pred             ceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEEC
Confidence            3444556667899999999999986 56779999982  21110   0       011111 3333332    4579999


Q ss_pred             cCCCCCCeEEEEEEEeCC--cCeeEEEEEEEEeec-CCCCCe-EEeCCCCceecCCCeEEEEeEeccCCC-C-ceEEEeC
Q psy15128        100 GVQKEDAGFFVCSALSVA--GSTTVRAFLQVTSVE-DTPPPI-VQVGPSNQTLPLHSVAFLPCQAVGSPP-P-HIRWYKN  173 (292)
Q Consensus       100 ~~~~~d~g~Y~C~~~~~~--~~~~~~~~l~v~~~~-~~~~~~-~~~~~~~~~~~~g~~v~l~C~~~~~p~-~-~~~W~~~  173 (292)
                      +++.+|+|.|+|.+.+..  ........+.|.... ...+|. ....+....+.+|+.++|.|.+.+.++ + .+.|+++
T Consensus       106 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~  185 (268)
T 3pl6_D          106 RTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN  185 (268)
T ss_dssp             SCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEES
T ss_pred             CCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEEC
Confidence            999999999999998742  222223345554211 112333 333455555667999999999988644 4 7999999


Q ss_pred             CeeCCC
Q psy15128        174 GNSLPP  179 (292)
Q Consensus       174 ~~~l~~  179 (292)
                      |..+..
T Consensus       186 g~~l~~  191 (268)
T 3pl6_D          186 GKEVHS  191 (268)
T ss_dssp             SSEECT
T ss_pred             CEECCC
Confidence            988865

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.65  E-value=8.5e-15  Score=108.22  Aligned_cols=133  Identities=22%  Similarity=0.323  Sum_probs=88.2

Q ss_pred             CCccEEecCCcEEEEEEEeeeC--CCeeEEEECC--eE---EeeccC---C--------CcceeEEee-----ecEEEEc
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSP--LPSVFWTQEG--SQ---VLMFPG---N--------AYGHLHVTQ-----EGTLRIQ   99 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~---~~~~~~---~--------~~~~~~~~~-----~~~l~i~   99 (292)
                      +....+.+|++++|.|.+.+.+  .+.+.|+|++  ..   +.....   .        ...+.....     ...|.|.
T Consensus         7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   86 (220)
T 1pz5_B            7 SGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMN   86 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             cCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEc
Confidence            4456788999999999998765  6789999853  21   111100   0        013333322     2389999


Q ss_pred             cCCCCCCeEEEEEEEeCCcCe-e--EEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC-ceEEEeCC
Q psy15128        100 GVQKEDAGFFVCSALSVAGST-T--VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP-HIRWYKNG  174 (292)
Q Consensus       100 ~~~~~d~g~Y~C~~~~~~~~~-~--~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~~~W~~~~  174 (292)
                      +++.+|+|.|+|.+.+..+.. .  ....|.|.... ..+|.+...+....+.+|+.++|.|.+.+. |.| .+.|++++
T Consensus        87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~-~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~  165 (220)
T 1pz5_B           87 NLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSAT-TTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGA  165 (220)
T ss_dssp             SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC-CBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             cCCHHHCEEEEEEEecCCcccceECCCEEEEEccCC-CCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCC
Confidence            999999999999999864321 1  23455554321 223444433333346789999999999887 888 99999987


Q ss_pred             ee
Q psy15128        175 NS  176 (292)
Q Consensus       175 ~~  176 (292)
                      ..
T Consensus       166 ~~  167 (220)
T 1pz5_B          166 LS  167 (220)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.65  E-value=4.5e-16  Score=115.31  Aligned_cols=121  Identities=19%  Similarity=0.264  Sum_probs=84.2

Q ss_pred             cccCCcCCCeeEEEEEEecccc----cccccEEEEEeC----CCcEEeCCCccEEecCCcEEEEEEEeee-CCC-eeEEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGE----RETKPALLTVHA----PPSFVVRPQDQKVGLNGIASFQCVAEGS-PLP-SVFWT   71 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~----~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~   71 (292)
                      |.+++.+|+|.|+|.+.+..+.    .....+.|.|..    +|.+...+....+.+|+.++|.|.+.+. |.+ .+.|+
T Consensus        85 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  164 (222)
T 1q9r_B           85 MNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWN  164 (222)
T ss_dssp             ECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEG
T ss_pred             ECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEe
Confidence            7899999999999999986541    222336788864    3555443333345679999999999985 887 99999


Q ss_pred             ECCeEEeecc--CC-CcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEE
Q psy15128         72 QEGSQVLMFP--GN-AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF  125 (292)
Q Consensus        72 ~~~~~~~~~~--~~-~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~  125 (292)
                      +++..+....  .. ..+  .....+.|.|.++..+| |.|+|.+.|..+.......
T Consensus       165 ~~g~~~~~~~~~~~~~~~--~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~  218 (222)
T 1q9r_B          165 SGSLSSGVHTFPAVLQSD--LYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKK  218 (222)
T ss_dssp             GGTBCTTEEEEEEEEETT--EEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             cCCeEcceEeccccccCC--cEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEe
Confidence            9886431100  00 001  22234579999999999 9999999998887655443

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.64  E-value=1.7e-15  Score=112.08  Aligned_cols=120  Identities=15%  Similarity=0.218  Sum_probs=83.0

Q ss_pred             cccCCcCCCeeEEEEEEecccc--cccccEEEEEeC----CCcEEeCCCccEEecCCcEEEEEEEeee-CCC-eeEEEEC
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGE--RETKPALLTVHA----PPSFVVRPQDQKVGLNGIASFQCVAEGS-PLP-SVFWTQE   73 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~   73 (292)
                      |.+++.+|+|.|+|.+.+..+.  .....+.|.|..    +|.+...+....+.+|+.++|.|.+.+. |.+ .+.|+++
T Consensus        85 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  164 (220)
T 1pz5_B           85 MNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYG  164 (220)
T ss_dssp             ECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             EccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecC
Confidence            7899999999999999986532  121337788863    4555544433446789999999999987 888 9999998


Q ss_pred             CeEE--eeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEE
Q psy15128         74 GSQV--LMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  123 (292)
Q Consensus        74 ~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~  123 (292)
                      +...  ...+..... ......+.|.|.++..+| |.|+|.|.|..+.....
T Consensus       165 ~~~~~~~~~~~~~~~-~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  214 (220)
T 1pz5_B          165 ALSSGVRTVSSVLQS-GFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLI  214 (220)
T ss_dssp             TCCTTEEECCCEEET-TEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             CcccceEEcCCcccC-CeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeee
Confidence            7631  011100000 122335679999988866 99999999988865443

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.64  E-value=1.9e-16  Score=118.25  Aligned_cols=119  Identities=17%  Similarity=0.205  Sum_probs=71.0

Q ss_pred             CcccCCcCCCeeEEEEEEecccccccccEEEEEeC---CCcEEeCCCccEEecCCcEEEEEEEeeeC-CC-eeEEEECCe
Q psy15128          1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA---PPSFVVRPQDQKVGLNGIASFQCVAEGSP-LP-SVFWTQEGS   75 (292)
Q Consensus         1 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~-~v~W~~~~~   75 (292)
                      .|.+++.+|+|.|+|.+.+..+......+.|.|..   +|.+...+......+|+.++|.|.+.+.+ .+ .+.|++++.
T Consensus        96 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~  175 (233)
T 3bqu_C           96 TIENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGS  175 (233)
T ss_dssp             C-----CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC--
T ss_pred             EECCCCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCe
Confidence            47899999999999999887654333334566654   56666544444445799999999998854 43 799999987


Q ss_pred             EEeec-----cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         76 QVLMF-----PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        76 ~~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      .+...     .............+.|.|..+..+|.|.|+|.+.|....
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          176 ERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             ---CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             eCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            65321     000011112223457899999999999999999986543

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.64  E-value=1.2e-15  Score=116.26  Aligned_cols=170  Identities=21%  Similarity=0.253  Sum_probs=102.0

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeC-----CCeeEEEECC--eE--Eeecc-----CCCcceeEEe---eecEEEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSP-----LPSVFWTQEG--SQ--VLMFP-----GNAYGHLHVT---QEGTLRI   98 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~-----~~~v~W~~~~--~~--~~~~~-----~~~~~~~~~~---~~~~l~i   98 (292)
                      .+.+...+....+.+|++++|.|.+.+.+     .+.+.|+|..  ..  .....     .....++...   ....|.|
T Consensus        15 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I   94 (268)
T 1x9q_A           15 DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKI   94 (268)
T ss_dssp             CCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred             cceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEE
Confidence            44555666777889999999999998766     4789999853  21  11110     0011233332   2347999


Q ss_pred             ccCCCCCCeEEEEEEEeCCcCe-eEEEEEEEEeecCCC----CC--------------eEEeCCCCceecCCCeEEEEeE
Q psy15128         99 QGVQKEDAGFFVCSALSVAGST-TVRAFLQVTSVEDTP----PP--------------IVQVGPSNQTLPLHSVAFLPCQ  159 (292)
Q Consensus        99 ~~~~~~d~g~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~----~~--------------~~~~~~~~~~~~~g~~v~l~C~  159 (292)
                      .+++.+|+|.|+|.+.+..+.. .....|.|.......    +|              .....+....+.+|++++|.|.
T Consensus        95 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~  174 (268)
T 1x9q_A           95 NRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCV  174 (268)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEE
T ss_pred             CCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEE
Confidence            9999999999999998764321 122344444321100    11              1222344567889999999999


Q ss_pred             eccCCC--CceEEEeCC--eeCC------------------CCCccEEEcC-----CCcEEEEeeecCCCCCC
Q psy15128        160 AVGSPP--PHIRWYKNG--NSLP------------------PEDTRINVSS-----SGSLQIDVLRDDFRAEP  205 (292)
Q Consensus       160 ~~~~p~--~~~~W~~~~--~~l~------------------~~~~~~~~~~-----~~~l~i~~~~~~d~g~~  205 (292)
                      +.+.+.  +.+.|+++.  ..+.                  ....++....     ..+|.|.++..+|+|.|
T Consensus       175 ~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y  247 (268)
T 1x9q_A          175 TSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIY  247 (268)
T ss_dssp             EESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             ecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEE
Confidence            987753  679999852  2110                  1112333321     23688888888887743

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.64  E-value=8.9e-16  Score=115.97  Aligned_cols=119  Identities=20%  Similarity=0.293  Sum_probs=83.2

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeC---CCcEEeCCCccEEecCCcEEEEEEEeee-CCC-eeEEEECCeE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA---PPSFVVRPQDQKVGLNGIASFQCVAEGS-PLP-SVFWTQEGSQ   76 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~~~   76 (292)
                      |.+++.+|+|.|+|.+.+..+......+.|.|..   +|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++++..
T Consensus       113 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~  192 (252)
T 3bkj_L          113 ISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE  192 (252)
T ss_dssp             ESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             ECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCee
Confidence            7899999999999999887554333336777764   4666554444444578999999999885 443 7999999987


Q ss_pred             Eeec-----cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         77 VLMF-----PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        77 ~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      +...     ...............|.|.++..+|.|.|+|.+.|.....
T Consensus       193 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          193 RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  241 (252)
T ss_dssp             ECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             cCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence            5321     0000111112234579999999999999999999876554

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.63  E-value=1.8e-15  Score=111.79  Aligned_cols=123  Identities=20%  Similarity=0.257  Sum_probs=81.7

Q ss_pred             cccCCcCCCeeEEEEEEecccc---cccccEEEEEeCC----CcEEeCCCccEEecCCcEEEEEEEee-eCCC-eeEEEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGE---RETKPALLTVHAP----PSFVVRPQDQKVGLNGIASFQCVAEG-SPLP-SVFWTQ   72 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~---~~~~~~~l~v~~~----p~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~   72 (292)
                      |.+++.+|+|.|+|.+.+..+.   .....+.|.|...    |.+...+....+.+|+.++|.|.+.+ .|.+ .+.|++
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  162 (219)
T 1c1e_H           83 INNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS  162 (219)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             ECCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEe
Confidence            7899999999999999987531   2223377888753    55544443344678999999999998 7888 999999


Q ss_pred             CCeEEeeccCCC-cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEE
Q psy15128         73 EGSQVLMFPGNA-YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF  125 (292)
Q Consensus        73 ~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~  125 (292)
                      ++..+....... .........+.|.|..... |.|.|+|.|.|..+.......
T Consensus       163 ~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~~~  215 (219)
T 1c1e_H          163 GSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVDKK  215 (219)
T ss_dssp             GTBCTTEEECCCEESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEEEE
T ss_pred             CCcccceEecCCcccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEEEe
Confidence            986531110000 0001122335788854444 569999999998776554443

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.63  E-value=5.6e-15  Score=109.80  Aligned_cols=134  Identities=19%  Similarity=0.241  Sum_probs=85.7

Q ss_pred             CCccEEecCCcEEEEEEEeeeCC----CeeEEEECC--eE---Eeecc--------CCCcceeEEee-----ecEEEEcc
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSPL----PSVFWTQEG--SQ---VLMFP--------GNAYGHLHVTQ-----EGTLRIQG  100 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~~----~~v~W~~~~--~~---~~~~~--------~~~~~~~~~~~-----~~~l~i~~  100 (292)
                      +....+.+|++++|.|.+.+.+.    +.+.|+|..  ..   +....        .....+.....     ...|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (228)
T 3bae_H            7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS   86 (228)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred             CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence            44567889999999999987664    789999852  21   11110        01123444332     35899999


Q ss_pred             CCCCCCeEEEEEEEeCCc------C---eeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC-ceE
Q psy15128        101 VQKEDAGFFVCSALSVAG------S---TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP-HIR  169 (292)
Q Consensus       101 ~~~~d~g~Y~C~~~~~~~------~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~~~  169 (292)
                      ++.+|+|.|.|.+.+..+      .   ....+.|.|.... ..+|.+...+....+..|+.++|.|.+.+. |.+ .+.
T Consensus        87 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~-~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~  165 (228)
T 3bae_H           87 VDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAK-TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLT  165 (228)
T ss_dssp             CCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCC-CBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEE
T ss_pred             CCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCC-CCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEE
Confidence            999999999999988653      1   1122455554211 123444433323346789999999999876 777 899


Q ss_pred             EEeCCeeC
Q psy15128        170 WYKNGNSL  177 (292)
Q Consensus       170 W~~~~~~l  177 (292)
                      |++++..+
T Consensus       166 W~~~~~~~  173 (228)
T 3bae_H          166 WNSGSLSS  173 (228)
T ss_dssp             EGGGTCCT
T ss_pred             EeeCCccc
Confidence            99988754

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.63  E-value=1.4e-15  Score=112.90  Aligned_cols=124  Identities=17%  Similarity=0.168  Sum_probs=79.2

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeC----CCcEEeCCCccEEecCCcEEEEEEEeee-CCC-eeEEEECCe
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA----PPSFVVRPQDQKVGLNGIASFQCVAEGS-PLP-SVFWTQEGS   75 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~~   75 (292)
                      |.+++.+|+|.|+|.+.+.........+.|.|..    +|.+........+.+|+.++|.|.+.+. |.+ .+.|++++.
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~  162 (227)
T 1mju_H           83 LSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSL  162 (227)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             ECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCC
Confidence            7899999999999999986432222336888874    3444433323346689999999999985 766 999999886


Q ss_pred             EEeeccCCC-cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEE
Q psy15128         76 QVLMFPGNA-YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL  126 (292)
Q Consensus        76 ~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l  126 (292)
                      .+....... .........+.|.|..+..+| |.|+|.+.|..+.......+
T Consensus       163 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~  213 (227)
T 1mju_H          163 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKI  213 (227)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             cCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEe
Confidence            531110000 000122335579999999888 99999999977665544444

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=1.3e-15  Score=101.04  Aligned_cols=110  Identities=27%  Similarity=0.546  Sum_probs=82.7

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..    ...+.....++.|.|.+++.+|+|.|+|.+.|
T Consensus         8 pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~----~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   83 (118)
T 2eo9_A            8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVST----QDSRIKQLENGVLQIRYAKLGDTGRYTCIAST   83 (118)
T ss_dssp             SCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCT----TSTTEEEEETTEEEEESCCGGGCCCEEEEEEC
T ss_pred             CCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcC----CCCeEEEccCCEEEEccCCcCCCEEEEEEEEc
Confidence            56677777788899999999999999999999999999876531    22334445577999999999999999999999


Q ss_pred             CCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCC
Q psy15128        116 VAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHS  152 (292)
Q Consensus       116 ~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~  152 (292)
                      ..|.....+.|.|..   .+.+.+...+....+.+|.
T Consensus        84 ~~g~~~~~~~l~V~~---~~~p~~~~~~~~~~~~~G~  117 (118)
T 2eo9_A           84 PSGEATWSAYIEVQE---FGVPVQPPRPTDPNLIPSA  117 (118)
T ss_dssp             SSCEEEEECCEEEEC---CSCCCCCCCCCCCCCCCCC
T ss_pred             CCCcEEEEEEEEEEe---CCCCccCCCCCCCccCCCC
Confidence            988877777777764   2233333344444455553

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.63  E-value=1e-14  Score=110.45  Aligned_cols=177  Identities=15%  Similarity=0.156  Sum_probs=105.2

Q ss_pred             CCCccEEecCCcEEEEEEEeeeC--CCeeEEEECC--eEEe--e-cc--C-------CCcceeEEee-----ecEEEEcc
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGSP--LPSVFWTQEG--SQVL--M-FP--G-------NAYGHLHVTQ-----EGTLRIQG  100 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~~--~-~~--~-------~~~~~~~~~~-----~~~l~i~~  100 (292)
                      .+....+.+|++++|.|.+.+.+  .+.+.|+|+.  ....  . ..  .       ....++....     ...|.|.+
T Consensus        12 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   91 (261)
T 2xqy_G           12 QPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSS   91 (261)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcC
Confidence            34566788999999999998765  5789999863  2111  0 00  0       0123343332     34899999


Q ss_pred             CCCCCCeEEEEEEEeCCcCe---eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC-ceEEEeCCe
Q psy15128        101 VQKEDAGFFVCSALSVAGST---TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP-HIRWYKNGN  175 (292)
Q Consensus       101 ~~~~d~g~Y~C~~~~~~~~~---~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~~~W~~~~~  175 (292)
                      ++.+|+|.|.|.+.+..+..   .....|.|.... ..+|.+...+....+..|+.++|.|.+.+. |.+ .+.|++++.
T Consensus        92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~-~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~  170 (261)
T 2xqy_G           92 LTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAK-TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSL  170 (261)
T ss_dssp             CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC-CBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTC
T ss_pred             CCcccCeEEEEEEecCCCcceEECCCEEEEEccCC-CCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCCC
Confidence            99999999999998853211   122355554311 123333332222346789999999999875 666 899999987


Q ss_pred             eCCCC-CccEEE----cCCCcEEEEeeecCCCCCCcceEEeCCCceEEEe
Q psy15128        176 SLPPE-DTRINV----SSSGSLQIDVLRDDFRAEPKDTRVASGETALLEC  220 (292)
Q Consensus       176 ~l~~~-~~~~~~----~~~~~l~i~~~~~~d~g~~~~~~~~~g~~~~l~C  220 (292)
                      .+... ......    .....|.|..+..+| |.|.......+....+.-
T Consensus       171 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~~~~  219 (261)
T 2xqy_G          171 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDK  219 (261)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             cCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCccEEE
Confidence            65321 011111    112246676666666 877655555554444433

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.63  E-value=1.5e-15  Score=114.93  Aligned_cols=116  Identities=15%  Similarity=0.229  Sum_probs=82.8

Q ss_pred             cccCCcCCCeeEEEEEEecc---cccccccEEEEEeC----------------CCcEEeCCCccEEecCCcEEEEEEEee
Q psy15128          2 ITEVKKSDEGKYQCYVQNMV---GERETKPALLTVHA----------------PPSFVVRPQDQKVGLNGIASFQCVAEG   62 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~---~~~~~~~~~l~v~~----------------~p~~~~~~~~~~~~~g~~~~l~C~~~~   62 (292)
                      |.+++.+|+|.|+|.+.+..   .......+.|.|..                +|.+...+....+.+|++++|.|.+.+
T Consensus        85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~  164 (256)
T 3umt_A           85 LRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQ  164 (256)
T ss_dssp             ECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESS
T ss_pred             ECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEec
Confidence            78999999999999998862   11222337888874                566667777788999999999999998


Q ss_pred             eCCCeeEEEECC--eEEe--ecc-----CCCcceeEEe---eecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         63 SPLPSVFWTQEG--SQVL--MFP-----GNAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        63 ~~~~~v~W~~~~--~~~~--~~~-----~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      .+.+.+.|+|..  ....  ...     .....+....   ....|.|.+++.+|+|.|+|.+.+..
T Consensus       165 ~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~  231 (256)
T 3umt_A          165 DIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASS  231 (256)
T ss_dssp             CCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSS
T ss_pred             CCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCC
Confidence            888899999842  2111  100     0011222222   22369999999999999999998753

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.63  E-value=3.3e-15  Score=110.56  Aligned_cols=128  Identities=17%  Similarity=0.230  Sum_probs=91.8

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEe-eeCCCeeEEEECCeEEeec
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE-GSPLPSVFWTQEGSQVLMF   80 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~   80 (292)
                      |.+++.+|+|.|+|.+.+..+........+.+..+|.....+.......++.+.+.|.+. +.|++.+.|++++..+...
T Consensus        87 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~  166 (225)
T 4fmk_A           87 FRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKD  166 (225)
T ss_dssp             ECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEE
T ss_pred             EccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCC
Confidence            789999999999999998777665554677777777766666666667778888887664 4688899999987644321


Q ss_pred             cC-CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128         81 PG-NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus        81 ~~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      .. ...........+.|.|.++..+|+|.|+|.|.|..+.......+.+.
T Consensus       167 ~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~  216 (225)
T 4fmk_A          167 TQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLS  216 (225)
T ss_dssp             EEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred             cceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEE
Confidence            10 00001112234579999999999999999999988877666655554

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.63  E-value=4.2e-16  Score=115.07  Aligned_cols=150  Identities=17%  Similarity=0.179  Sum_probs=93.1

Q ss_pred             CCeEEeCCCCce--ecCCCeEEEEeEeccC---CC-CceEEEeCCeeCCCCCccE-EEc------CCCcEEEEeeecCCC
Q psy15128        136 PPIVQVGPSNQT--LPLHSVAFLPCQAVGS---PP-PHIRWYKNGNSLPPEDTRI-NVS------SSGSLQIDVLRDDFR  202 (292)
Q Consensus       136 ~~~~~~~~~~~~--~~~g~~v~l~C~~~~~---p~-~~~~W~~~~~~l~~~~~~~-~~~------~~~~l~i~~~~~~d~  202 (292)
                      +|.+.+.+....  +.+|+.++|.|.+.+.   |. +.+.|+|++..+....... ...      ..+.|.|.++..+|+
T Consensus         9 ~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~   88 (218)
T 2rgs_A            9 GPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSG   88 (218)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTT
T ss_pred             CCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCC
Confidence            344444444444  7899999999999876   33 6899999998765421100 011      123577777777777


Q ss_pred             CCC--------------------------cceEEe-------CCCceEEEeeCCCC-CCCC-eEEEeEcCeEeccCCCce
Q psy15128        203 AEP--------------------------KDTRVA-------SGETALLECGPPKG-QPEP-TLHWKKNGQFIDLESSKR  247 (292)
Q Consensus       203 g~~--------------------------~~~~~~-------~g~~~~l~C~~~~~-~p~~-~~~W~~~g~~~~~~~~~~  247 (292)
                      |.|                          +.+.+.       .|+.++|.|.+ .| +|++ .+.|+++|..+.......
T Consensus        89 g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~-~g~~P~~~~v~W~k~g~~~~~~~~~~  167 (218)
T 2rgs_A           89 KEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLV-VGFNPGDISVEWTSNGHTEENYKDTA  167 (218)
T ss_dssp             CCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEE-EEEBSSCCEEEEEETTEEECCEEECC
T ss_pred             CeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEE-EeeeCCCcEEEEEECCEeccCceecc
Confidence            722                          111111       38899999999 56 6765 999999999874211112


Q ss_pred             EEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128        248 VSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       248 ~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      .....++.+...  ..|.+......|.|.|+|.|.|.....
T Consensus       168 ~~~~~~gt~~~~--s~l~v~~~~~~d~g~YtC~a~n~~l~~  206 (218)
T 2rgs_A          168 PVLDSDGSYFIY--SKLNMKTSKWEKTDSFSCNVRHEGLKN  206 (218)
T ss_dssp             CEECTTSCEEEE--EEEEEEHHHHHHCSCEEEEEECTTSGG
T ss_pred             cEECCCCCEEEE--EEEEECHHHcCCCCeEEEEEEcCCCCC
Confidence            222344433321  234444445556999999999987654

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.63  E-value=2e-15  Score=110.53  Aligned_cols=129  Identities=14%  Similarity=0.176  Sum_probs=77.1

Q ss_pred             ecCCcEEEEEEEeeeC----CCeeEEEECCeEEeeccCCCcc---eeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCee
Q psy15128         49 GLNGIASFQCVAEGSP----LPSVFWTQEGSQVLMFPGNAYG---HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT  121 (292)
Q Consensus        49 ~~g~~~~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~  121 (292)
                      .+|++++|.|.+.+.+    ...+.|+|++..+.........   ...+.....|.|.....+|+|.|+|.+.|..+...
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~   95 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP   95 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence            6899999999998875    2489999999765321100000   00111122344444444569999999999876543


Q ss_pred             EEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CC-CceEEEeCCeeCC
Q psy15128        122 VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PP-PHIRWYKNGNSLP  178 (292)
Q Consensus       122 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~~~W~~~~~~l~  178 (292)
                      ....+.+. .....+|.+.+.+.......|..++|.|.+.+. |. +.+.|+++|.++.
T Consensus        96 ~~~~v~~~-~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~  153 (207)
T 1l6x_A           96 IEKTISKA-KGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPEN  153 (207)
T ss_dssp             EEEEECCC-CSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             eEEEeccC-CCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeecc
Confidence            33333210 011223444433332222356669999999885 44 4899999998765

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.63  E-value=2e-15  Score=113.65  Aligned_cols=116  Identities=18%  Similarity=0.234  Sum_probs=81.5

Q ss_pred             cccCCcCCCeeEEEEEEecccc-cccccEEEEEeCC---------------CcEEeCCCccEEecCCcEEEEEEEeeeCC
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGE-RETKPALLTVHAP---------------PSFVVRPQDQKVGLNGIASFQCVAEGSPL   65 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~-~~~~~~~l~v~~~---------------p~~~~~~~~~~~~~g~~~~l~C~~~~~~~   65 (292)
                      |.+++.+|+|.|+|.+.+..+. .....+.|.|..+               +.+...+....+.+|++++|.|.+.+.+.
T Consensus        85 I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~  164 (247)
T 2ghw_B           85 MNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVR  164 (247)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCT
T ss_pred             ECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCcc
Confidence            7899999999999999987222 1223367888754               33445566677889999999999999888


Q ss_pred             CeeEEEE--CCeEEeec---c----CCCcceeEEe---eecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         66 PSVFWTQ--EGSQVLMF---P----GNAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        66 ~~v~W~~--~~~~~~~~---~----~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      +.+.|+|  ++..+...   .    .....+....   ....|.|.+++.+|+|.|+|.+.+..
T Consensus       165 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~  228 (247)
T 2ghw_B          165 SNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNW  228 (247)
T ss_dssp             TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSS
T ss_pred             ceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCC
Confidence            8999999  44432110   0    0111222221   23479999999999999999998753

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.62  E-value=2.2e-15  Score=110.62  Aligned_cols=119  Identities=21%  Similarity=0.271  Sum_probs=82.2

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeC----CCcEEeCCCccEEecCCcEEEEEEEeee-CCC-eeEEEECCe
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA----PPSFVVRPQDQKVGLNGIASFQCVAEGS-PLP-SVFWTQEGS   75 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~~   75 (292)
                      |.+++.+|+|.|+|.+.+..  .....+.|.|..    +|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++++.
T Consensus        82 I~~v~~~D~G~Y~C~~~~~~--~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~  159 (210)
T 3d9a_H           82 LNSVTTEDTATYYCANWDGD--YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  159 (210)
T ss_dssp             ECSCCGGGCEEEEEEETTSS--CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             ECCCCcccCEEEEEEEecCc--ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCc
Confidence            78999999999999998753  222236777763    4555544434456789999999999986 877 999999886


Q ss_pred             EEeeccCCCc-ceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEE
Q psy15128         76 QVLMFPGNAY-GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  123 (292)
Q Consensus        76 ~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~  123 (292)
                      .+........ ........+.|.|.++..+| |.|+|.+.|..+.....
T Consensus       160 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  207 (210)
T 3d9a_H          160 SSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD  207 (210)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             ccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcccc
Confidence            4311110000 00122334579999988877 99999999988765543

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.62  E-value=2.9e-15  Score=113.04  Aligned_cols=114  Identities=15%  Similarity=0.275  Sum_probs=79.2

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCC-------------------CcEEeCCCccEEecCCcEEEEEEEee
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAP-------------------PSFVVRPQDQKVGLNGIASFQCVAEG   62 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------------------p~~~~~~~~~~~~~g~~~~l~C~~~~   62 (292)
                      |.+++.+|+|.|+|.+.+..+........|.|..+                   +.....+....+.+|+.++|.|.+.+
T Consensus        78 I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~  157 (250)
T 3esu_F           78 ISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSG  157 (250)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCS
T ss_pred             EccCChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecC
Confidence            78999999999999999876554444467888653                   23334556677889999999999987


Q ss_pred             eC--CCeeEEEEC--CeEEeec------------cCCCcceeEEeee-----cEEEEccCCCCCCeEEEEEEEe
Q psy15128         63 SP--LPSVFWTQE--GSQVLMF------------PGNAYGHLHVTQE-----GTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        63 ~~--~~~v~W~~~--~~~~~~~------------~~~~~~~~~~~~~-----~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      .+  .+.+.|+|+  +..+...            ......+.....+     ..|.|.+++.+|+|.|+|.+.+
T Consensus       158 ~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          158 YAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             TTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            65  679999997  3322110            0011123333322     2699999999999999999986

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.62  E-value=1.4e-15  Score=115.21  Aligned_cols=116  Identities=16%  Similarity=0.266  Sum_probs=80.6

Q ss_pred             cccCCcCCCeeEEEEEEeccc--------ccccccEEEEEeCCC---------------cEEeCCCccEEecCCcEEEEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVG--------ERETKPALLTVHAPP---------------SFVVRPQDQKVGLNGIASFQC   58 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~--------~~~~~~~~l~v~~~p---------------~~~~~~~~~~~~~g~~~~l~C   58 (292)
                      |.+++++|+|.|+|.+.+..|        ......+.|.|..+|               .+...+....+.+|++++|.|
T Consensus        82 I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C  161 (257)
T 1f3r_B           82 MNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSC  161 (257)
T ss_dssp             EESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEE
T ss_pred             ECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEE
Confidence            789999999999999998743        112233678887653               122334456688999999999


Q ss_pred             EEeeeCCCeeEEEE--CCeEEee--ccC-----CCcceeEE---eeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         59 VAEGSPLPSVFWTQ--EGSQVLM--FPG-----NAYGHLHV---TQEGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        59 ~~~~~~~~~v~W~~--~~~~~~~--~~~-----~~~~~~~~---~~~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      .+.+.+.+.+.|+|  ++..+..  ...     ....++..   .....|.|.+++.+|+|.|+|.+.|..
T Consensus       162 ~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          162 KGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG  232 (257)
T ss_dssp             ECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred             EECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence            99888878999999  4443211  000     00122222   123479999999999999999999853

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.62  E-value=3.1e-16  Score=114.85  Aligned_cols=146  Identities=15%  Similarity=0.140  Sum_probs=90.5

Q ss_pred             EeCCCCce-ecCCCeEEEEeEeccCC---C-CceEEEeCCeeCCCCCc--cEE-----EcCCCcEEEEeeecCCCCCC--
Q psy15128        140 QVGPSNQT-LPLHSVAFLPCQAVGSP---P-PHIRWYKNGNSLPPEDT--RIN-----VSSSGSLQIDVLRDDFRAEP--  205 (292)
Q Consensus       140 ~~~~~~~~-~~~g~~v~l~C~~~~~p---~-~~~~W~~~~~~l~~~~~--~~~-----~~~~~~l~i~~~~~~d~g~~--  205 (292)
                      ...|.... +.+|+.++|.|.+.+.+   . ..+.|++++..+.....  ...     ......|.|.++..+|+|.|  
T Consensus         6 ~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C   85 (207)
T 2vol_A            6 IFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKC   85 (207)
T ss_dssp             EECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEE
T ss_pred             EeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEE
Confidence            33444344 78999999999998774   2 47999999877643210  000     01113577777777777722  


Q ss_pred             ------------------------cceEEe-------CCCceEEEeeCCCC-CCC-CeEEEeEcCeEeccCCCceEEecC
Q psy15128        206 ------------------------KDTRVA-------SGETALLECGPPKG-QPE-PTLHWKKNGQFIDLESSKRVSILG  252 (292)
Q Consensus       206 ------------------------~~~~~~-------~g~~~~l~C~~~~~-~p~-~~~~W~~~g~~~~~~~~~~~~~~~  252 (292)
                                              +.+.+.       .|+.+.|.|.+ .+ +|+ +.+.|+++|+++............
T Consensus        86 ~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~-~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~  164 (207)
T 2vol_A           86 RVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMI-TDFFPEDITVEWESNGQPAENYKNTQPIMDT  164 (207)
T ss_dssp             EEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEE-EEEBSSCCEEEEEETTEECSCEEECCCEECT
T ss_pred             EEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEE-eeEECCCCEEEEEECCEeccCcccCCceECC
Confidence                                    111111       38899999998 55 565 499999999987422111222334


Q ss_pred             CCccccccccccccccccccccceeEEEEeeccccc
Q psy15128        253 DPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       253 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      ++.+...  ..|.+......|.|.|+|.|+|.....
T Consensus       165 ~g~~~~~--s~l~i~~~~~~~~g~ytC~a~n~~l~~  198 (207)
T 2vol_A          165 DGSYFVY--SKLNVQKSNWEAGNTFTCSVLHEGLHN  198 (207)
T ss_dssp             TSCEEEE--EEEEEEHHHHSSCCEEEEEEECTTSGG
T ss_pred             CCCEEEE--EEEEECHHHcCCCCEEEEEEECCCCCC
Confidence            4433321  234455555567999999999987543

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.62  E-value=9.7e-15  Score=111.95  Aligned_cols=163  Identities=16%  Similarity=0.219  Sum_probs=98.9

Q ss_pred             CCccEEecCCcEEEEEEEeee--CCCeeEEEECCe--E---Eeecc---------CCCcceeEEeee-----cEEEEccC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGS--PLPSVFWTQEGS--Q---VLMFP---------GNAYGHLHVTQE-----GTLRIQGV  101 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~~--~---~~~~~---------~~~~~~~~~~~~-----~~l~i~~~  101 (292)
                      +....+.+|++++|.|.+.+.  +.+.+.|+|...  .   +....         .....++....+     ..|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL   86 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            667788999999999999774  557899998431  1   00000         001123333322     37999999


Q ss_pred             CCCCCeEEEEEEEeCC-------cC--eeEEEEEEEEeec----------CCCCCeEEeCCCCceecCCCeEEEEeEecc
Q psy15128        102 QKEDAGFFVCSALSVA-------GS--TTVRAFLQVTSVE----------DTPPPIVQVGPSNQTLPLHSVAFLPCQAVG  162 (292)
Q Consensus       102 ~~~d~g~Y~C~~~~~~-------~~--~~~~~~l~v~~~~----------~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~  162 (292)
                      +.+|+|.|+|.+.+..       ..  ......|.|....          ..+++.+...+. ..+.+|++++|.|.+.+
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~~  165 (280)
T 3fku_X           87 RSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGNS  165 (280)
T ss_dssp             CSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEEECCC
T ss_pred             ChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEEEecC
Confidence            9999999999998761       11  1122344443200          012333443444 77889999999999987


Q ss_pred             -CC-CCceEEEeC--CeeCC---C--------CCccEEEcCC---CcEEEEeeecCCCCCCc
Q psy15128        163 -SP-PPHIRWYKN--GNSLP---P--------EDTRINVSSS---GSLQIDVLRDDFRAEPK  206 (292)
Q Consensus       163 -~p-~~~~~W~~~--~~~l~---~--------~~~~~~~~~~---~~l~i~~~~~~d~g~~~  206 (292)
                       .+ .+.+.|++.  +..+.   .        ...++.....   ..|.|.++..+|+|.|.
T Consensus       166 ~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~  227 (280)
T 3fku_X          166 NNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYY  227 (280)
T ss_dssp             CCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEE
T ss_pred             CCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEE
Confidence             33 478999983  22211   0        0122322222   24899999999999654

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.62  E-value=8.8e-15  Score=109.50  Aligned_cols=116  Identities=18%  Similarity=0.233  Sum_probs=80.6

Q ss_pred             cccCCcCCCeeEEEEEEecccc----cccccEEEEEeCCC------------cEEeCCCccEEecCCcEEEEEEEeeeCC
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGE----RETKPALLTVHAPP------------SFVVRPQDQKVGLNGIASFQCVAEGSPL   65 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~----~~~~~~~l~v~~~p------------~~~~~~~~~~~~~g~~~~l~C~~~~~~~   65 (292)
                      |.+++++|+|.|+|.+.+..+.    .....+.|.|...+            .+...+....+.+|+.++|.|.+.+.|.
T Consensus        77 I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~  156 (238)
T 2p1y_A           77 LELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAF  156 (238)
T ss_dssp             ESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTC
T ss_pred             EecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCC
Confidence            7899999999999999987542    11223678886654            4555667778999999999999999888


Q ss_pred             CeeEEEECCe-----EEeeccCC----CcceeEEe-----eecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         66 PSVFWTQEGS-----QVLMFPGN----AYGHLHVT-----QEGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        66 ~~v~W~~~~~-----~~~~~~~~----~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      +.+.|+|++.     .+......    ...+....     ....|.|.+++.+|+|.|+|.+.|..
T Consensus       157 ~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          157 DYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             CEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             CcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            9999999641     11100000    01222222     13479999999999999999999863

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.61  E-value=9e-17  Score=122.71  Aligned_cols=172  Identities=17%  Similarity=0.160  Sum_probs=91.7

Q ss_pred             CCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCC--eeCC
Q psy15128        101 VQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNG--NSLP  178 (292)
Q Consensus       101 ~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--~~l~  178 (292)
                      ..+.|.+.|.|.+.+..+.......+.           +...+....+.+|++++|.|.+.+ +.+.+.|+|..  ..+.
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~~~~~~~~-----------v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~   70 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGSGGGGGMK-----------VIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFK   70 (270)
T ss_dssp             -------------------------CC-----------CEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEE
T ss_pred             chhhhHHHHHHHHhccCCcccccccee-----------EEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcE
Confidence            356788999999987665443332222           222345566889999999999865 67789999832  1100


Q ss_pred             ------CC-----C---c-cEEEcC----CCcEEEEeeecCCCCCC--------------------------------cc
Q psy15128        179 ------PE-----D---T-RINVSS----SGSLQIDVLRDDFRAEP--------------------------------KD  207 (292)
Q Consensus       179 ------~~-----~---~-~~~~~~----~~~l~i~~~~~~d~g~~--------------------------------~~  207 (292)
                            ..     .   . ++....    +.+|.|.+++.+|+|.|                                +.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~  150 (270)
T 3qib_D           71 FLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPE  150 (270)
T ss_dssp             EEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCE
T ss_pred             EEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCc
Confidence                  00     0   0 333322    34799999999999822                                11


Q ss_pred             eEE--------eCCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCceEE--------ecCCCcccccccccccccccc
Q psy15128        208 TRV--------ASGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVS--------ILGDPWFDSRRSRSIFGSVLG  270 (292)
Q Consensus       208 ~~~--------~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~i~~~~  270 (292)
                      ..+        ..|+.++|.|.+....|.+ .+.|+++|+++...  ....        ...++.+..  ...|.+....
T Consensus       151 v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~--~~~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~  226 (270)
T 3qib_D          151 VAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSG--VCTDPQPLKEQPALNDSRYAL--SSRLRVSATF  226 (270)
T ss_dssp             EEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTT--EEECSSCEESCTTSSSCCEEE--EEEEEEEHHH
T ss_pred             eEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCC--cccccccccccccCCCCCEEE--EEEEEEcHHH
Confidence            111        1388999999983337766 89999999998532  2111        012332221  2346666666


Q ss_pred             ccc-cceeEEEEeeccccc
Q psy15128        271 ALS-DDQWKLIAKNIRNQQ  288 (292)
Q Consensus       271 ~~~-~g~y~C~a~n~~g~~  288 (292)
                      .+| .|.|+|.|+|.....
T Consensus       227 ~~d~~g~YtC~v~~~~l~~  245 (270)
T 3qib_D          227 WQNPRNHFRCQVQFYGLSE  245 (270)
T ss_dssp             HHSTTCEEEEEEEECCBCT
T ss_pred             hccCCCeEEEEEEecCCCC
Confidence            777 999999999987654

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.61  E-value=7.2e-16  Score=116.04  Aligned_cols=143  Identities=13%  Similarity=0.145  Sum_probs=93.7

Q ss_pred             CCCCceecCCCeEEEEeEeccCCCCceEEEe----------------CCeeCCCCC--ccEEEcC----CCcEEEEeeec
Q psy15128        142 GPSNQTLPLHSVAFLPCQAVGSPPPHIRWYK----------------NGNSLPPED--TRINVSS----SGSLQIDVLRD  199 (292)
Q Consensus       142 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~----------------~~~~l~~~~--~~~~~~~----~~~l~i~~~~~  199 (292)
                      .+....+.+|+.++|.|.+.+.+.+.+.|+|                ++.......  .++....    ..+|.|.+++.
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~   86 (246)
T 4dzb_B            7 HPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHP   86 (246)
T ss_dssp             ECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCG
T ss_pred             CCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCH
Confidence            4455678899999999999888889999998                222222211  2333322    23799999999


Q ss_pred             CCCCCC--------------------------------cceEE--------eCCCceEEEeeCCCCCCCC--eEEEeEcC
Q psy15128        200 DFRAEP--------------------------------KDTRV--------ASGETALLECGPPKGQPEP--TLHWKKNG  237 (292)
Q Consensus       200 ~d~g~~--------------------------------~~~~~--------~~g~~~~l~C~~~~~~p~~--~~~W~~~g  237 (292)
                      +|+|.|                                +...+        .+|+.++|.|.+ .+.|++  .+.|+++|
T Consensus        87 ~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~-~g~~p~~~~v~W~k~g  165 (246)
T 4dzb_B           87 EDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLA-TGFYPDHVELSWWVNG  165 (246)
T ss_dssp             GGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEE-EEEBSSCEEEEEEETT
T ss_pred             HHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEE-ccCcCCceEEEEEECC
Confidence            999932                                01111        127899999998 564443  89999999


Q ss_pred             eEeccCCCceEEec--------CCCccccccccccccccccccc-cceeEEEEeecccccc
Q psy15128        238 QFIDLESSKRVSIL--------GDPWFDSRRSRSIFGSVLGALS-DDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       238 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~i~~~~~~~-~g~y~C~a~n~~g~~~  289 (292)
                      +.+..  .......        .++.+.  ....|.|......| .|.|+|.|+|......
T Consensus       166 ~~l~~--~~~~~~~~~~~~~~~~~g~~~--~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~  222 (246)
T 4dzb_B          166 KEVHS--GVCTDPQPLKEQPALNDSRYA--LSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  222 (246)
T ss_dssp             EEECT--TEEECSSCEESSTTSTTCCEE--EEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             EECCC--CcccccccccccccCCCCCEE--EEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence            99852  2221111        122222  12246677777777 9999999999876643

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.61  E-value=6.6e-14  Score=103.01  Aligned_cols=135  Identities=19%  Similarity=0.335  Sum_probs=87.8

Q ss_pred             CCccEEecCCcEEEEEEEeeeC--CCeeEEEECC--eE---Eeecc--------CCCcceeEEee-----ecEEEEccCC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSP--LPSVFWTQEG--SQ---VLMFP--------GNAYGHLHVTQ-----EGTLRIQGVQ  102 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~---~~~~~--------~~~~~~~~~~~-----~~~l~i~~~~  102 (292)
                      +....+.+|++++|.|.+.+.+  .+.+.|+|..  ..   +....        .....+.....     ...|.|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (215)
T 1c5d_H            7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ   86 (215)
T ss_dssp             ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred             CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence            4456788999999999998754  4689999863  21   11110        01123444332     2389999999


Q ss_pred             CCCCeEEEEEEEeCCcC---eeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC-ceEEEeCCeeC
Q psy15128        103 KEDAGFFVCSALSVAGS---TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP-HIRWYKNGNSL  177 (292)
Q Consensus       103 ~~d~g~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~~~W~~~~~~l  177 (292)
                      .+|+|.|.|.+.+..+.   ......|.|......+|.+....+. ..+..|+.++|.|.+.+. |.+ .+.|++++..+
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  165 (215)
T 1c5d_H           87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPG-CGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSS  165 (215)
T ss_dssp             GGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCC-SSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCC
T ss_pred             cccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCC-hhhccCCcEEEEEEEeeeEcCCcEEEEccCCccC
Confidence            99999999999876421   1123455554322122333333333 335789999999999876 777 89999998764


Q ss_pred             C
Q psy15128        178 P  178 (292)
Q Consensus       178 ~  178 (292)
                      .
T Consensus       166 ~  166 (215)
T 1c5d_H          166 D  166 (215)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.61  E-value=3.4e-15  Score=112.81  Aligned_cols=125  Identities=18%  Similarity=0.227  Sum_probs=81.8

Q ss_pred             cccCCcCCCeeEEEEEEecc---cccccccEEEEEe----CCCcEEeCCCccEEecCCcEEEEEEEee-eCCC-eeEEEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMV---GERETKPALLTVH----APPSFVVRPQDQKVGLNGIASFQCVAEG-SPLP-SVFWTQ   72 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~---~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~   72 (292)
                      |.+++.+|+|.|+|.+.+..   .......+.|.|.    .+|.+...+....+..|+.++|.|.+.+ .|.+ .+.|++
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~  162 (253)
T 3liz_H           83 MSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS  162 (253)
T ss_dssp             ECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             ECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEe
Confidence            78999999999999998753   1122233678886    3455554444445667999999999988 5656 899999


Q ss_pred             CCeEEeeccC--CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128         73 EGSQVLMFPG--NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  128 (292)
Q Consensus        73 ~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v  128 (292)
                      ++..+.....  .... ..+...+.|.|.....+| |.|+|.+.|..+.......+.+
T Consensus       163 ~~~~~~~~~~~~~~~~-g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~  218 (253)
T 3liz_H          163 GSLSSGVHTFPAVLQS-DLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVP  218 (253)
T ss_dssp             GTBCTTEEECCCEEET-TEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCC
T ss_pred             CCeecceEeCCccccC-CeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecC
Confidence            8863211000  0001 123334689999999999 9999999998877665555443

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.61  E-value=3.4e-16  Score=115.10  Aligned_cols=117  Identities=18%  Similarity=0.211  Sum_probs=82.3

Q ss_pred             cccCCcCCCeeEEEEEEeccc--ccccccEEEEEe----CCCcEEeCCCccEEecCCcEEEEEEEeee-CC-CeeEEEEC
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVG--ERETKPALLTVH----APPSFVVRPQDQKVGLNGIASFQCVAEGS-PL-PSVFWTQE   73 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~--~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~W~~~   73 (292)
                      |.+++.+|+|.|+|.+.+...  ......+.|.|.    .+|.+...+....+.+|+.++|.|.+.+. |. +.+.|+++
T Consensus        73 I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~  152 (212)
T 1nfd_E           73 ISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKAN  152 (212)
T ss_dssp             ETTCCGGGCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEET
T ss_pred             ECcCCcccCEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEEC
Confidence            789999999999999996322  122233667774    45666655555555689999999999887 54 79999999


Q ss_pred             CeEEeeccCCC----cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         74 GSQVLMFPGNA----YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        74 ~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      +..+.......    .... ....+.|.|.++..+|+|.|+|.|.|..+.
T Consensus       153 g~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          153 GATINDGVKTTKPSKQGQN-YMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             TEEECSSCBCCCCBCSSSC-EEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             CeEcCCCeecCCceecCCC-ceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence            98764221000    0111 223456999999999999999999997654

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.61  E-value=7.3e-15  Score=110.09  Aligned_cols=114  Identities=16%  Similarity=0.243  Sum_probs=80.9

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCC------cEEeCCCccEEecCCcEEEEEEEeeeC--CCeeEEEEC
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP------SFVVRPQDQKVGLNGIASFQCVAEGSP--LPSVFWTQE   73 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p------~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~   73 (292)
                      |.+++++|+|.|+|.+.+..+......+.|.|..++      .+...+....+.+|+.++|.|.+.+.|  .+.+.|+|+
T Consensus        79 I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~  158 (240)
T 1moe_A           79 IDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQ  158 (240)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             EcCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEE
Confidence            789999999999999998765534444788887643      244456677889999999999998876  458999995


Q ss_pred             C--eEEe----ec--------cCCCcceeEEee-----ecEEEEccCCCCCCeEEEEEEEe
Q psy15128         74 G--SQVL----MF--------PGNAYGHLHVTQ-----EGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        74 ~--~~~~----~~--------~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      .  ....    ..        ......+.....     ...|.|.+++.+|+|.|+|.+.+
T Consensus       159 ~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          159 RPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             CTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             CCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence            2  2111    00        000112233322     24799999999999999999984

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.61  E-value=5.8e-15  Score=111.55  Aligned_cols=138  Identities=23%  Similarity=0.351  Sum_probs=86.4

Q ss_pred             CCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--e--EEee-ccCCC-------cc-eeEEeeecE--EEEccCCCCCC
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--S--QVLM-FPGNA-------YG-HLHVTQEGT--LRIQGVQKEDA  106 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~--~~~~-~~~~~-------~~-~~~~~~~~~--l~i~~~~~~d~  106 (292)
                      .+....+.+|++++|.|.+.+.+.+.+.|+|..  .  .... .....       .. ++.......  |.|.+++.+|+
T Consensus         7 ~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~Ds   86 (253)
T 3to4_D            7 NPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQG   86 (253)
T ss_dssp             ECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCSSC
T ss_pred             CCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChhhC
Confidence            455677889999999999888788899999831  1  1111 11100       01 232222222  99999999999


Q ss_pred             eEEEEEEEeCCc---C---eeEEEEEEEEeec-CCCCCeEEe-CCCCceecCCCeEEEEeEecc-CCCC-ceEEEeCCee
Q psy15128        107 GFFVCSALSVAG---S---TTVRAFLQVTSVE-DTPPPIVQV-GPSNQTLPLHSVAFLPCQAVG-SPPP-HIRWYKNGNS  176 (292)
Q Consensus       107 g~Y~C~~~~~~~---~---~~~~~~l~v~~~~-~~~~~~~~~-~~~~~~~~~g~~v~l~C~~~~-~p~~-~~~W~~~~~~  176 (292)
                      |.|+|.+.+..+   .   ......+.|.... ...+|.+.+ .+....+..|+.++|.|.+.+ +|.+ .+.|+++|.+
T Consensus        87 G~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~  166 (253)
T 3to4_D           87 RTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE  166 (253)
T ss_dssp             EEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred             eEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCEE
Confidence            999999986533   1   1112344444211 112333333 233333445789999999988 4666 7999999998


Q ss_pred             CCC
Q psy15128        177 LPP  179 (292)
Q Consensus       177 l~~  179 (292)
                      +..
T Consensus       167 l~~  169 (253)
T 3to4_D          167 VHS  169 (253)
T ss_dssp             ECT
T ss_pred             CCC
Confidence            865

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.61  E-value=5.7e-16  Score=115.68  Aligned_cols=120  Identities=18%  Similarity=0.217  Sum_probs=80.6

Q ss_pred             cccCCcCCCeeEEEEEEecccc--cccccEEEEEe----CCCcEEeCCCccEEecCCcEEEEEEEeee-CC-CeeEEEEC
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGE--RETKPALLTVH----APPSFVVRPQDQKVGLNGIASFQCVAEGS-PL-PSVFWTQE   73 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~W~~~   73 (292)
                      |.+++.+|+|.|+|.+.+..+.  .....+.|.|.    .+|.+...+.......|+.++|.|.+.+. |. +.+.|+++
T Consensus        95 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~  174 (234)
T 2j6e_L           95 ISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKAD  174 (234)
T ss_dssp             EESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEET
T ss_pred             ECCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEEC
Confidence            7899999999999999987662  22222566663    34554443333334468899999999885 43 38999999


Q ss_pred             CeEEeecc----CCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCee
Q psy15128         74 GSQVLMFP----GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT  121 (292)
Q Consensus        74 ~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~  121 (292)
                      +..+....    ............+.|.|.++..+|.|.|+|.+.|......
T Consensus       175 g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  226 (234)
T 2j6e_L          175 GAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVE  226 (234)
T ss_dssp             TEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCC
T ss_pred             CEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceE
Confidence            98763110    0000011112234789999999999999999999866533

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.61  E-value=4.7e-15  Score=95.76  Aligned_cols=93  Identities=19%  Similarity=0.264  Sum_probs=72.8

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...  .............|.|.+++.+|+|.|+|.+.
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   84 (103)
T 3qp3_A            7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQES--SKIHYTNTSGVLTLEILDCHTDDSGTYRAVCT   84 (103)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCC--SSEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCC--CCEEEEECCCEEEEEEcCCCcccCEEEEEEEE
Confidence            4567777778889999999999999999999999999999876321  11111111122479999999999999999999


Q ss_pred             eCCcCeeEEEEEEEE
Q psy15128        115 SVAGSTTVRAFLQVT  129 (292)
Q Consensus       115 ~~~~~~~~~~~l~v~  129 (292)
                      |..|.......|.|.
T Consensus        85 N~~G~~~~~~~l~V~   99 (103)
T 3qp3_A           85 NYKGEASDYATLDVT   99 (103)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             eCCCcEEEEEEEEEE
Confidence            999888777777765

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.60  E-value=5.7e-16  Score=115.35  Aligned_cols=137  Identities=20%  Similarity=0.263  Sum_probs=87.4

Q ss_pred             eCCCccEEecCCcEEEEEEEeee-CC-C-eeEEEECCeEE-eeccCCC--cceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGS-PL-P-SVFWTQEGSQV-LMFPGNA--YGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~-~~-~-~v~W~~~~~~~-~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      ..+....+.+|+.++|.|.+.+. |. + .+.|++++..+ .......  .....+.....|.|.++..+|.|.|+|.+.
T Consensus        18 ~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~   97 (231)
T 2w59_A           18 IPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQ   97 (231)
T ss_dssp             ECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEE
T ss_pred             eCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEE
Confidence            44555567789999999999885 53 4 99999988765 1110000  000111234579999999999999999999


Q ss_pred             eCCcCeeEEEEEEEEee-cCCCCCeEEe-CCCCceecCCCeEEEEeEeccC-C-CCceEEEeCCeeCCCC
Q psy15128        115 SVAGSTTVRAFLQVTSV-EDTPPPIVQV-GPSNQTLPLHSVAFLPCQAVGS-P-PPHIRWYKNGNSLPPE  180 (292)
Q Consensus       115 ~~~~~~~~~~~l~v~~~-~~~~~~~~~~-~~~~~~~~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~l~~~  180 (292)
                      +..+.....  +.+... ....+|.+.+ .+....+ .+..++|.|.+.++ | .+.+.|+++|.++...
T Consensus        98 ~~~~~~~~~--~~v~~~~~~~~~P~v~v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~  164 (231)
T 2w59_A           98 HEELPLPLS--KSVYRNTGPTTPPLIYPFAPHPEEL-SLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPAT  164 (231)
T ss_dssp             CTTCSSCEE--EEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEECCGG
T ss_pred             cCCCCCceE--EEEecCCCCCcCCEEEEeCCCHHHh-ccCceEEEEEEEeccCCCcEEEEEECCEECCCc
Confidence            876543333  233211 0112344433 3333333 35679999999886 4 3689999999988653

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.60  E-value=3.7e-15  Score=112.85  Aligned_cols=115  Identities=18%  Similarity=0.249  Sum_probs=81.2

Q ss_pred             cccCCcCCCeeEEEEEEec-----------ccccccccEEEEEeC---------------CCcEEeCCCccEEecCCcEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNM-----------VGERETKPALLTVHA---------------PPSFVVRPQDQKVGLNGIAS   55 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~-----------~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~g~~~~   55 (292)
                      |.+++.+|+|.|.|.+.+.           ........+.|.|..               ++.+...+....+.+|++++
T Consensus        89 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~  168 (256)
T 3juy_B           89 LRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGERAT  168 (256)
T ss_dssp             ECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTSCEE
T ss_pred             ECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCCCEE
Confidence            7899999999999999986           122223337888876               34566677788899999999


Q ss_pred             EEEEEeeeCC-CeeEEEEC--CeEEe--eccC-----CCcceeEEe---eecEEEEccCCCCCCeEEEEEEEeC
Q psy15128         56 FQCVAEGSPL-PSVFWTQE--GSQVL--MFPG-----NAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        56 l~C~~~~~~~-~~v~W~~~--~~~~~--~~~~-----~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                      |.|.+.+.+. +.+.|+|.  +....  ....     ....+....   ....|.|.+++.+|+|.|+|.+.+.
T Consensus       169 L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  242 (256)
T 3juy_B          169 FSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGA  242 (256)
T ss_dssp             EEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCS
T ss_pred             EEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeC
Confidence            9999988765 79999983  22111  1100     011222222   2336999999999999999999874

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.60  E-value=2.1e-14  Score=91.89  Aligned_cols=90  Identities=30%  Similarity=0.444  Sum_probs=71.0

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeee---cEEEEccCCCCCCeEEEEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE---GTLRIQGVQKEDAGFFVCS  112 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~Y~C~  112 (292)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...    ..+.....+   ..|.|.+++.+|+|.|+|.
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (99)
T 1u2h_A            5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPD----QRRFAEEAEGGLCRLRILAAERGDAGFYTCK   80 (99)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCB----TTEEEEECGGGEEEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCC----CCEEEEECCCCEEEEEEccCCcCCCEEEEEE
Confidence            566777777888999999999999999999999999999876421    112222222   2799999999999999999


Q ss_pred             EEeCCcCeeEEEEEEEE
Q psy15128        113 ALSVAGSTTVRAFLQVT  129 (292)
Q Consensus       113 ~~~~~~~~~~~~~l~v~  129 (292)
                      +.|..|.....+.|.|.
T Consensus        81 a~N~~g~~~~~~~l~V~   97 (99)
T 1u2h_A           81 AVNEYGARQCEARLEVR   97 (99)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEECCCceeEEEEEEEE
Confidence            99998887777776664

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.60  E-value=9.4e-15  Score=111.83  Aligned_cols=115  Identities=14%  Similarity=0.276  Sum_probs=79.6

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCC--------------cEEeCCCccEEecCCcEEEEEEEeeeC--C
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP--------------SFVVRPQDQKVGLNGIASFQCVAEGSP--L   65 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p--------------~~~~~~~~~~~~~g~~~~l~C~~~~~~--~   65 (292)
                      |.+++.+|+|.|+|.+.+..+......+.|.|..+|              .....+....+.+|++++|.|.+.+.+  .
T Consensus        86 I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~  165 (276)
T 3auv_A           86 ISSLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISD  165 (276)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGG
T ss_pred             EccCChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCC
Confidence            789999999999999998765434444677776543              223345567888999999999998765  5


Q ss_pred             CeeEEEECC--eEEe-e---c--------cCCCcceeEEeee-----cEEEEccCCCCCCeEEEEEEEeC
Q psy15128         66 PSVFWTQEG--SQVL-M---F--------PGNAYGHLHVTQE-----GTLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        66 ~~v~W~~~~--~~~~-~---~--------~~~~~~~~~~~~~-----~~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                      +.+.|+|++  .... .   .        ......+.....+     ..|.|.+++.+|+|.|+|.+.|.
T Consensus       166 ~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          166 YWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF  235 (276)
T ss_dssp             SEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence            799999963  2111 0   0        0111233333322     37999999999999999999987

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.60  E-value=1.1e-15  Score=113.80  Aligned_cols=147  Identities=14%  Similarity=0.119  Sum_probs=93.3

Q ss_pred             EEeCCCCceecCCCeEEEEeEeccC-CC-C-ceEEEeCCeeC-CCCCccEEEcCCC------cEEEEeeecCCCCCC---
Q psy15128        139 VQVGPSNQTLPLHSVAFLPCQAVGS-PP-P-HIRWYKNGNSL-PPEDTRINVSSSG------SLQIDVLRDDFRAEP---  205 (292)
Q Consensus       139 ~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~-~~~W~~~~~~l-~~~~~~~~~~~~~------~l~i~~~~~~d~g~~---  205 (292)
                      ....|....+.+|+.++|.|.+.+. |. + .+.|+++|..+ ...........++      .|.|.++..+|+|.|   
T Consensus        16 ~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~   95 (231)
T 2w59_A           16 YAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCT   95 (231)
T ss_dssp             EEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEE
T ss_pred             EEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEE
Confidence            3455666667899999999999885 63 4 89999999877 3322222222333      366666666676622   


Q ss_pred             -----------------------cceEEe-------CCCceEEEeeCCCC-CC-CCeEEEeEcCeEeccCCCce--EEec
Q psy15128        206 -----------------------KDTRVA-------SGETALLECGPPKG-QP-EPTLHWKKNGQFIDLESSKR--VSIL  251 (292)
Q Consensus       206 -----------------------~~~~~~-------~g~~~~l~C~~~~~-~p-~~~~~W~~~g~~~~~~~~~~--~~~~  251 (292)
                                             +.+.+.       .+..++|.|.+ .+ +| .+.|.|+++|+.+.......  ....
T Consensus        96 ~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~-~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~  174 (231)
T 2w59_A           96 VQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLV-RGFRPRDIEIRWLRDHRAVPATEFVTTAVLPE  174 (231)
T ss_dssp             EECTTCSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEE-EEEBSSCCEEEEEETTEECCGGGCEECCCEEC
T ss_pred             EEcCCCCCceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEE-EeccCCCcEEEEEECCEECCCcccccCccccC
Confidence                                   112221       14579999999 55 45 37999999999985332111  1111


Q ss_pred             --------CC-CccccccccccccccccccccceeEEEEeeccccc
Q psy15128        252 --------GD-PWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       252 --------~~-~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                              .+ +.+.  ....|.|......|.|.|+|.|.|.....
T Consensus       175 ~~~~~~~~~d~gt~~--~~s~L~i~~~~~~~~g~YtC~v~n~~l~~  218 (231)
T 2w59_A          175 ERTANGAGGDGDTFF--VYSKMSVETAKWNGGTVFACMAVHEALPM  218 (231)
T ss_dssp             CTTSCC---CCCCEE--EEEEEEEEHHHHHTTCCEEEEEECTTSTT
T ss_pred             cccccccCCCCCeEE--EEEEEEEeHHHcCCCCcEEEEEEcCCCCC
Confidence                    22 3332  22356677777778999999999988653

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.60  E-value=2.1e-14  Score=94.41  Aligned_cols=91  Identities=21%  Similarity=0.287  Sum_probs=72.7

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEe---eecEEEEccCCCCCCeEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVC  111 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C  111 (292)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...     .+....   ....|.|.+++.+|+|.|+|
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   80 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQES-----EHMKVENSENGSKLTILAARQEHCGCYTL   80 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCS-----SSEEEEECSSEEEEEETTCCTTTCEEEEE
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCC-----CCEEEEEcCCEEEEEECCCChhcCEEEEE
Confidence            3567777777889999999999999999999999999998765311     122222   24589999999999999999


Q ss_pred             EEEeCCcCeeEEEEEEEEe
Q psy15128        112 SALSVAGSTTVRAFLQVTS  130 (292)
Q Consensus       112 ~~~~~~~~~~~~~~l~v~~  130 (292)
                      .+.|..|.....+.|.|..
T Consensus        81 ~a~N~~g~~~~~~~l~V~~   99 (114)
T 2cqv_A           81 LVENKLGSRQAQVNLTVVD   99 (114)
T ss_dssp             EEECSSCEEECCEEEEEEC
T ss_pred             EEEECCCcEEEEEEEEEEC
Confidence            9999988777777777654

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=4.3e-15  Score=95.16  Aligned_cols=91  Identities=25%  Similarity=0.407  Sum_probs=72.1

Q ss_pred             EeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEE
Q psy15128         33 VHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS  112 (292)
Q Consensus        33 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~  112 (292)
                      +..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...     ..........|.|.++..+|+|.|+|.
T Consensus         8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~-----~~~~~~~~~~L~i~~v~~~D~G~Y~C~   82 (99)
T 2yr3_A            8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA-----RSTCEAGVAELHIQDALPEDHGTYTCL   82 (99)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSC-----CCEEETTEEEEEECSCCTTCCBCEEEE
T ss_pred             cccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECccc-----ceEeeCCeEEEEECCCChhhCEEEEEE
Confidence            445677777788888999999999999999999999999998765311     112223345899999999999999999


Q ss_pred             EEeCCcCeeEEEEEEE
Q psy15128        113 ALSVAGSTTVRAFLQV  128 (292)
Q Consensus       113 ~~~~~~~~~~~~~l~v  128 (292)
                      +.|..|.....+.|.|
T Consensus        83 a~N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           83 AENALGQVSCSAWVTV   98 (99)
T ss_dssp             EECSSCEEEEECCEEE
T ss_pred             EEECCCeEEEEEEEEE
Confidence            9999887766665554

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.60  E-value=6.5e-15  Score=111.54  Aligned_cols=115  Identities=19%  Similarity=0.298  Sum_probs=79.4

Q ss_pred             cccCCcCCCeeEEEEEEeccc---ccccccEEEEEeCC--------------CcEEeCCCccEEecCCcEEEEEEEeeeC
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVG---ERETKPALLTVHAP--------------PSFVVRPQDQKVGLNGIASFQCVAEGSP   64 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~---~~~~~~~~l~v~~~--------------p~~~~~~~~~~~~~g~~~~l~C~~~~~~   64 (292)
                      |.+++.+|+|.|+|.+.+..+   ......+.|.|..+              +.+...+....+.+|++++|.|.+.+.+
T Consensus        90 I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~  169 (257)
T 3gkz_A           90 LKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSV  169 (257)
T ss_dssp             ECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCC
T ss_pred             ECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCc
Confidence            789999999999999998621   11223367888764              4555666778899999999999998877


Q ss_pred             CC-eeEEEEC--CeEEe--eccC-----CCcceeEEe---eecEEEEccCCCCCCeEEEEEEEeC
Q psy15128         65 LP-SVFWTQE--GSQVL--MFPG-----NAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        65 ~~-~v~W~~~--~~~~~--~~~~-----~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                      .+ .+.|+|.  +....  ....     ....+....   ....|.|.+++.+|+|.|+|.+.+.
T Consensus       170 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~  234 (257)
T 3gkz_A          170 SSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSS  234 (257)
T ss_dssp             CGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             cceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccC
Confidence            76 8999984  22111  1000     001222222   2236999999999999999999864

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.60  E-value=9.1e-15  Score=108.04  Aligned_cols=119  Identities=17%  Similarity=0.204  Sum_probs=82.0

Q ss_pred             cccCCcCCCeeEEEEEEecccc--cccccEEEEEeC----CCcEEeCCCccEEecCCcEEEEEEEeee-CC--CeeEEEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGE--RETKPALLTVHA----PPSFVVRPQDQKVGLNGIASFQCVAEGS-PL--PSVFWTQ   72 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~--~~v~W~~   72 (292)
                      |.+++++|+|.|.|.+.+..+.  .....+.|.|..    +|.+...+ ...+..|+.++|.|.+.+. |.  +.+.|++
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~  161 (220)
T 2fbj_H           83 MSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGK  161 (220)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESC
T ss_pred             ECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEec
Confidence            7899999999999999986442  122337888874    34444433 3345689999999999886 66  6899999


Q ss_pred             CCeEEeeccCCC--cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCee
Q psy15128         73 EGSQVLMFPGNA--YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT  121 (292)
Q Consensus        73 ~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~  121 (292)
                      ++..+.......  .....+...+.|.|.+...+|.|.|+|.+.|..+...
T Consensus       162 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          162 SGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             CCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             CCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            886542111100  0111122234689999999999999999999876543

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.60  E-value=5.2e-15  Score=97.57  Aligned_cols=93  Identities=32%  Similarity=0.543  Sum_probs=74.3

Q ss_pred             eCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeee----cEEEEccCCCCCCeEE
Q psy15128         34 HAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE----GTLRIQGVQKEDAGFF  109 (292)
Q Consensus        34 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~g~Y  109 (292)
                      ..+|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+...    ..+.....+    ..|.|.+++.+|+|.|
T Consensus        13 ~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~----~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (116)
T 2kkq_A           13 KRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFN----TDRISLYQDNTGRVTLLIKDVNKKDAGWY   88 (116)
T ss_dssp             CBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCC----BTTEEEEECTTCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCC----CCeEEEEeCCCCeEEEEECCCCcccCEEE
Confidence            34677888888899999999999999999999999999999876421    122222222    2799999999999999


Q ss_pred             EEEEEeCCcCeeEEEEEEEEe
Q psy15128        110 VCSALSVAGSTTVRAFLQVTS  130 (292)
Q Consensus       110 ~C~~~~~~~~~~~~~~l~v~~  130 (292)
                      +|.+.|..|.....+.|.|..
T Consensus        89 ~C~a~N~~G~~~~~~~l~V~~  109 (116)
T 2kkq_A           89 TVSAVNEAGVTTCNTRLDVTA  109 (116)
T ss_dssp             EEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEcCCCeEEEEEEEEEeC
Confidence            999999988877777777764

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.59  E-value=9.3e-15  Score=110.63  Aligned_cols=116  Identities=20%  Similarity=0.310  Sum_probs=77.0

Q ss_pred             cccCCcCCCeeEEEEEEecccc--cccccEEEEEeCCCc--------------------EEeCCCccEEecCCcEEEEEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGE--RETKPALLTVHAPPS--------------------FVVRPQDQKVGLNGIASFQCV   59 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~--~~~~~~~l~v~~~p~--------------------~~~~~~~~~~~~g~~~~l~C~   59 (292)
                      |.+++.+|+|.|+|.+.+..+.  .....+.|.|..++.                    ....+....+.+|++++|.|.
T Consensus        78 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~  157 (256)
T 3ux9_B           78 ITGLQSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCA  157 (256)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEE
T ss_pred             ECCCChhhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEE
Confidence            7899999999999999986432  222337788876541                    222334456889999999999


Q ss_pred             EeeeC--CCeeEEEEC--CeEEee----ccC--------CCcceeEEee-----ecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         60 AEGSP--LPSVFWTQE--GSQVLM----FPG--------NAYGHLHVTQ-----EGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        60 ~~~~~--~~~v~W~~~--~~~~~~----~~~--------~~~~~~~~~~-----~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      +.+.+  .+.+.|+|+  +.....    ...        ....+.....     ...|.|.+++.+|+|.|+|.+.+..
T Consensus       158 ~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          158 ASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             EESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            98765  679999986  322210    000        0112332222     2359999999999999999999853

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.59  E-value=1.9e-14  Score=92.15  Aligned_cols=92  Identities=28%  Similarity=0.386  Sum_probs=71.5

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCccee-EEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHL-HVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      +|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+...  ...... .......|.|.+++.+|+|.|+|.+.
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   82 (99)
T 1g1c_A            5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERS--DRIYWYWPEDNVCELVIRDVTGEDSASIMVKAI   82 (99)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCC--SSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCC--CCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEE
Confidence            466777777888999999999999999999999999999876421  111110 11223479999999999999999999


Q ss_pred             eCCcCeeEEEEEEEE
Q psy15128        115 SVAGSTTVRAFLQVT  129 (292)
Q Consensus       115 ~~~~~~~~~~~l~v~  129 (292)
                      |..|.....+.|.|.
T Consensus        83 N~~g~~~~~~~l~V~   97 (99)
T 1g1c_A           83 NIAGETSSHAFLLVQ   97 (99)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             ECCCcEEEEEEEEEe
Confidence            998887777777664

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=1.1e-14  Score=93.34  Aligned_cols=91  Identities=33%  Similarity=0.619  Sum_probs=74.5

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..    ...+.....++.|.|.+++.+|+|.|+|.+.
T Consensus         7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~   82 (100)
T 2edj_A            7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPG----RDPRATIQEQGTLQIKNLRISDTGTYTCVAT   82 (100)
T ss_dssp             SSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESS----SCSSCEECTTCCEEEESCCTTTCCEEEEEEE
T ss_pred             CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCC----CCCCEEEcCCCEEEEccCCcccCEEEEEEEE
Confidence            467777788888899999999999999999999999999887641    1223334456689999999999999999999


Q ss_pred             eCCcCeeEEEEEEEE
Q psy15128        115 SVAGSTTVRAFLQVT  129 (292)
Q Consensus       115 ~~~~~~~~~~~l~v~  129 (292)
                      |..|.....+.|.|.
T Consensus        83 n~~g~~~~~~~l~V~   97 (100)
T 2edj_A           83 SSSGETSWSAVLDVT   97 (100)
T ss_dssp             CSSCCCBCCEEEEEE
T ss_pred             cCCCCEEEEEEEEEe
Confidence            998887777777765

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.59  E-value=4.4e-15  Score=112.07  Aligned_cols=134  Identities=16%  Similarity=0.292  Sum_probs=78.8

Q ss_pred             CCccEEecCCcEEEEEEEeeeC--CCeeEEEECC--eEE--ee-c-c--------CCCcceeEEee-----ecEEEEccC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSP--LPSVFWTQEG--SQV--LM-F-P--------GNAYGHLHVTQ-----EGTLRIQGV  101 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~--~~-~-~--------~~~~~~~~~~~-----~~~l~i~~~  101 (292)
                      +....+.+|++++|.|.+.+.+  .+.+.|+|..  ...  .. . .        .....++....     ...|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (257)
T 3bn9_D            7 SGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSL   86 (257)
T ss_dssp             ECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESC
T ss_pred             cCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCC
Confidence            3356788999999999998764  5689999853  111  10 0 0        01123443332     348999999


Q ss_pred             CCCCCeEEEEEEEeCCcC---------e--e--EEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC-
Q psy15128        102 QKEDAGFFVCSALSVAGS---------T--T--VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP-  166 (292)
Q Consensus       102 ~~~d~g~Y~C~~~~~~~~---------~--~--~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-  166 (292)
                      +.+|+|.|.|.+.+..+.         .  .  ....|.|... ...+|.+........+..|+.++|.|.+.+. |.+ 
T Consensus        87 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~-~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi  165 (257)
T 3bn9_D           87 RAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSA-STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV  165 (257)
T ss_dssp             CGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSS-CCBCCEECCCCC-----------CCCEEEEEBSSCC
T ss_pred             ChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCC-CCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCc
Confidence            999999999999986531         1  1  1234555421 1123444333323345689999999999876 766 


Q ss_pred             ceEEEeCCeeC
Q psy15128        167 HIRWYKNGNSL  177 (292)
Q Consensus       167 ~~~W~~~~~~l  177 (292)
                      .+.|++++..+
T Consensus       166 ~v~W~k~g~~~  176 (257)
T 3bn9_D          166 TVSWNSGALTS  176 (257)
T ss_dssp             EEEETTTTCCS
T ss_pred             EEEEeeCCCcC
Confidence            89999998764

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.59  E-value=4.4e-15  Score=96.78  Aligned_cols=98  Identities=24%  Similarity=0.485  Sum_probs=66.6

Q ss_pred             EEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeE
Q psy15128         29 ALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGF  108 (292)
Q Consensus        29 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  108 (292)
                      +.|.+..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...    ...........|.|.+++.+|+|.
T Consensus         3 ~~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~----~~~~~~~~~~~L~i~~v~~~D~G~   78 (108)
T 3kvq_A            3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED----SGIVLKDGNRNLTIRRVRKEDEGL   78 (108)
T ss_dssp             --------CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCB----TTEEEETTTTEEEECSCCGGGCEE
T ss_pred             eeECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccC----CCeEEeCCCcEEEEeecCcccCEE
Confidence            5566777888888888889999999999999999999999999998765321    111222335689999999999999


Q ss_pred             EEEEEEeCCcCeeEEEEEEEEe
Q psy15128        109 FVCSALSVAGSTTVRAFLQVTS  130 (292)
Q Consensus       109 Y~C~~~~~~~~~~~~~~l~v~~  130 (292)
                      |+|.+.|..|.....+.|.|..
T Consensus        79 Y~C~a~n~~g~~~~~~~l~V~~  100 (108)
T 3kvq_A           79 YTCQACSVLGCAKVEAFFIIEG  100 (108)
T ss_dssp             EEEEEC----CEEEEEEEEEEC
T ss_pred             EEEEEEeCCCceEEEEEEEEeC
Confidence            9999999999888888877764

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.59  E-value=2.1e-14  Score=107.68  Aligned_cols=115  Identities=17%  Similarity=0.207  Sum_probs=77.7

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCc-------------EEeCCCccEEecCCcEEEEEEEeeeC--CC
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS-------------FVVRPQDQKVGLNGIASFQCVAEGSP--LP   66 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-------------~~~~~~~~~~~~g~~~~l~C~~~~~~--~~   66 (292)
                      |.+++.+|+|.|+|.+.+..+......+.|.|..+|.             ....+....+.+|++++|.|.+.+.+  .+
T Consensus        75 I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~  154 (242)
T 2znx_A           75 INSVETEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSD  154 (242)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGS
T ss_pred             ECCCChHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCc
Confidence            7899999999999999987543333347888876552             33333445688999999999998765  46


Q ss_pred             eeEEEECC--eEEe--ec---cC------CCcceeEEee-----ecEEEEccCCCCCCeEEEEEEEeC
Q psy15128         67 SVFWTQEG--SQVL--MF---PG------NAYGHLHVTQ-----EGTLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        67 ~v~W~~~~--~~~~--~~---~~------~~~~~~~~~~-----~~~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                      .+.|+|+.  ....  ..   .+      ....+.....     ...|.|.+++.+|+|.|+|.+.+.
T Consensus       155 ~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          155 YXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             CEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             ceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence            89999853  2211  00   00      0122333322     248999999999999999999873

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.59  E-value=1.6e-14  Score=92.63  Aligned_cols=91  Identities=26%  Similarity=0.451  Sum_probs=71.1

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeee--cEEEEccCCCCCCeEEEEEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE--GTLRIQGVQKEDAGFFVCSA  113 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~Y~C~~  113 (292)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....   .........  ..|.|.+++.+|+|.|+|.+
T Consensus         5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~---~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   81 (100)
T 2kdg_A            5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDD---LHKMIVSEKGLHSLIFEVVRASDAGAYACVA   81 (100)
T ss_dssp             EEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCS---SSCEEEETTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCC---cEEEEEcCCCeEEEEECCCCcccCEEEEEEE
Confidence            4556666777889999999999999999999999999998764221   111222222  38999999999999999999


Q ss_pred             EeCCcCeeEEEEEEEE
Q psy15128        114 LSVAGSTTVRAFLQVT  129 (292)
Q Consensus       114 ~~~~~~~~~~~~l~v~  129 (292)
                      .|..|.....+.|.|.
T Consensus        82 ~n~~g~~~~~~~l~V~   97 (100)
T 2kdg_A           82 KNRAGEATFTVQLDVL   97 (100)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EcCCCeEEEEEEEEEE
Confidence            9999887777777665

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.59  E-value=2.7e-14  Score=105.74  Aligned_cols=122  Identities=12%  Similarity=0.186  Sum_probs=81.5

Q ss_pred             cccCCcCCCeeEEEEEEeccc---c--cccccEEEEEeC----CCcEEeCCCccEEecCCcEEEEEEEeee-CCC-eeEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVG---E--RETKPALLTVHA----PPSFVVRPQDQKVGLNGIASFQCVAEGS-PLP-SVFW   70 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~---~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W   70 (292)
                      |.+++.+|+|.|+|.+.+..+   .  .....+.|.|..    +|.+...+....+.+|+.++|.|.+.+. |.+ .+.|
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W  162 (223)
T 1dee_B           83 MNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSW  162 (223)
T ss_dssp             ECSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             ECCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEe
Confidence            789999999999999988642   1  122336888873    3444432222335689999999999886 766 9999


Q ss_pred             EE-CCeEEeecc-CCC-cceeEEeeecEEEEccCCC--CCCeEEEEEEEeCCcCeeEE
Q psy15128         71 TQ-EGSQVLMFP-GNA-YGHLHVTQEGTLRIQGVQK--EDAGFFVCSALSVAGSTTVR  123 (292)
Q Consensus        71 ~~-~~~~~~~~~-~~~-~~~~~~~~~~~l~i~~~~~--~d~g~Y~C~~~~~~~~~~~~  123 (292)
                      ++ ++..+.... ... .....+...+.|.|.....  +|.|.|+|.+.|..+.....
T Consensus       163 ~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~  220 (223)
T 1dee_B          163 KYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKD  220 (223)
T ss_dssp             EETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEE
T ss_pred             EccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCccc
Confidence            99 776542100 000 0001222345788888876  88999999999987765443

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.59  E-value=2.3e-14  Score=107.23  Aligned_cols=139  Identities=17%  Similarity=0.345  Sum_probs=90.6

Q ss_pred             eCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--eEE--ee-c-------cCCCcceeEEe----eecEEEEccCCCC
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--SQV--LM-F-------PGNAYGHLHVT----QEGTLRIQGVQKE  104 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~~~--~~-~-------~~~~~~~~~~~----~~~~l~i~~~~~~  104 (292)
                      ..+..+.+.+|++++|.|.+. .+.+.+.|+|..  ...  .. .       ......++...    ....|.|.+++.+
T Consensus         4 q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~   82 (238)
T 1bec_A            4 QSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPS   82 (238)
T ss_dssp             EECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGG
T ss_pred             cCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcc
Confidence            345667889999999999985 457799999863  111  10 0       00112233332    2348999999999


Q ss_pred             CCeEEEEEEEeCCc---Ce--eEEEEEEEEeec-CCCCCeEE-eCCCCceecCCCeEEEEeEeccC-CCC-ceEEEeCCe
Q psy15128        105 DAGFFVCSALSVAG---ST--TVRAFLQVTSVE-DTPPPIVQ-VGPSNQTLPLHSVAFLPCQAVGS-PPP-HIRWYKNGN  175 (292)
Q Consensus       105 d~g~Y~C~~~~~~~---~~--~~~~~l~v~~~~-~~~~~~~~-~~~~~~~~~~g~~v~l~C~~~~~-p~~-~~~W~~~~~  175 (292)
                      |+|.|.|.+.+..+   ..  .....|.|.... ...+|.+. ..+....+..|+.++|.|.+.+. |.+ .+.|+++|.
T Consensus        83 D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~  162 (238)
T 1bec_A           83 QTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGK  162 (238)
T ss_dssp             GCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTE
T ss_pred             cCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECCE
Confidence            99999999987631   11  122345554321 11234443 34555556789999999999876 654 899999999


Q ss_pred             eCCCC
Q psy15128        176 SLPPE  180 (292)
Q Consensus       176 ~l~~~  180 (292)
                      ++...
T Consensus       163 ~~~~~  167 (238)
T 1bec_A          163 EVHSG  167 (238)
T ss_dssp             EECTT
T ss_pred             ECCCc
Confidence            88653

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.59  E-value=5.1e-14  Score=106.31  Aligned_cols=168  Identities=16%  Similarity=0.259  Sum_probs=96.4

Q ss_pred             CCccEEecCCcEEEEEEEeee--CCCeeEEEECC--e--EEe--ec--------cCCCcceeEEee-----ecEEEEccC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGS--PLPSVFWTQEG--S--QVL--MF--------PGNAYGHLHVTQ-----EGTLRIQGV  101 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~--~--~~~--~~--------~~~~~~~~~~~~-----~~~l~i~~~  101 (292)
                      +....+.+|++++|.|.+.+.  +...+.|+|..  .  ...  ..        ......++....     ...|+|.++
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (253)
T 3liz_H            7 SGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSL   86 (253)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            345678899999999999763  35689999842  1  111  00        011123343332     235999999


Q ss_pred             CCCCCeEEEEEEEeCC----cCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEecc-CCCC-ceEEEeCCe
Q psy15128        102 QKEDAGFFVCSALSVA----GSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVG-SPPP-HIRWYKNGN  175 (292)
Q Consensus       102 ~~~d~g~Y~C~~~~~~----~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~~~W~~~~~  175 (292)
                      +.+|+|.|.|.+.+..    ........+.|.. ....+|.+...+....+..|+.++|.|.+.+ +|.+ .+.|++++.
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~-~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~  165 (253)
T 3liz_H           87 KSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSA-AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  165 (253)
T ss_dssp             CGGGCEEEEEEECCBTTTBCCEECCCEEEEECS-SCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             ChhhCEEEEEEEecCCcceeeEECCCEEEEEec-cCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCe
Confidence            9999999999998752    1112223455542 2223444443333345667999999999987 5656 799999987


Q ss_pred             eCCCCC-ccEE----EcCCCcEEEEeeecCCCCCCcceEEeC
Q psy15128        176 SLPPED-TRIN----VSSSGSLQIDVLRDDFRAEPKDTRVAS  212 (292)
Q Consensus       176 ~l~~~~-~~~~----~~~~~~l~i~~~~~~d~g~~~~~~~~~  212 (292)
                      .+.... ....    +...+.|.|.....+| |.|....-..
T Consensus       166 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~  206 (253)
T 3liz_H          166 SSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHP  206 (253)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEG
T ss_pred             ecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEEC
Confidence            432110 0011    1111356666666666 7665444333

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.59  E-value=6e-15  Score=93.27  Aligned_cols=89  Identities=13%  Similarity=0.182  Sum_probs=68.1

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--eEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--SQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA  113 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~  113 (292)
                      +|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++  ..+.  ..  ...........|.|.++..+|+|.|+|.+
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~--~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   77 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALA--PE--LLVDAKSSTTSIFFPSAKRADSGNYKLKV   77 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCS--TT--SEEEEETTEEEEECTTBCGGGCEEEEEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccC--Cc--EEEEecCCEEEEEECCCChhcCEEEEEEE
Confidence            466655667778899999999999999999999999998  6542  11  11111123457999999999999999999


Q ss_pred             EeCCcCeeEEEEEEE
Q psy15128        114 LSVAGSTTVRAFLQV  128 (292)
Q Consensus       114 ~~~~~~~~~~~~l~v  128 (292)
                      .|..|.....+.|.|
T Consensus        78 ~N~~G~~~~~~~l~V   92 (93)
T 1wit_A           78 KNELGEDEAIFEVIV   92 (93)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             EcCCCeEEEEEEEEE
Confidence            999987766666554

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.59  E-value=1e-14  Score=112.04  Aligned_cols=114  Identities=18%  Similarity=0.282  Sum_probs=80.0

Q ss_pred             cccCCcCCCeeEEEEEEecccc----cccccEEEEEeCCC---------------cEEeCCCccEEecCCcEEEEEEEee
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGE----RETKPALLTVHAPP---------------SFVVRPQDQKVGLNGIASFQCVAEG   62 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~----~~~~~~~l~v~~~p---------------~~~~~~~~~~~~~g~~~~l~C~~~~   62 (292)
                      |.+++.+|+|.|+|.+.+..+.    .....+.|.|..+|               .+...+....+.+|++++|.|.+.+
T Consensus       109 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~  188 (282)
T 1qok_A          109 LSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASS  188 (282)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESS
T ss_pred             ECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecC
Confidence            7899999999999999987651    12233678887643               3444566677899999999999988


Q ss_pred             eCCCeeEEEE--CCeEEee--c-c----CCCcceeEEe---eecEEEEccCCCCCCeEEEEEEEeC
Q psy15128         63 SPLPSVFWTQ--EGSQVLM--F-P----GNAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        63 ~~~~~v~W~~--~~~~~~~--~-~----~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                      .+ +.+.|+|  ++..+..  . .    .....++...   ....|.|.+++.+|+|.|+|.+.+.
T Consensus       189 ~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  253 (282)
T 1qok_A          189 SV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSS  253 (282)
T ss_dssp             CC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeC
Confidence            88 8999999  4443211  0 0    0011222221   2347999999999999999999864

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.59  E-value=3.7e-14  Score=90.78  Aligned_cols=89  Identities=27%  Similarity=0.522  Sum_probs=71.2

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEee---ecEEEEccCCCCCCeEEEEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ---EGTLRIQGVQKEDAGFFVCS  112 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y~C~  112 (292)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..     ..+.....   ...|.|.++..+|+|.|+|.
T Consensus         6 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (99)
T 3puc_A            6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQ-----GGKYKLSEDKGGFFLEIHKTDTSDSGLYTCT   80 (99)
T ss_dssp             EEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCS-----SSSEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcC-----CCCEEEEEeCCEEEEEECCCCcccCEEEEEE
Confidence            56667777788899999999999999999999999999987631     12222222   23799999999999999999


Q ss_pred             EEeCCcCeeEEEEEEEE
Q psy15128        113 ALSVAGSTTVRAFLQVT  129 (292)
Q Consensus       113 ~~~~~~~~~~~~~l~v~  129 (292)
                      +.|..|.......|.|.
T Consensus        81 a~n~~g~~~~~~~l~V~   97 (99)
T 3puc_A           81 VKNSAGSVSSSCKLTIK   97 (99)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEeCCCcEeEEEEEEEE
Confidence            99998887777777664

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.59  E-value=4.6e-14  Score=105.81  Aligned_cols=139  Identities=22%  Similarity=0.353  Sum_probs=88.8

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeee--CCCeeEEEECC--eE---Eeecc---------CCCcceeEEe-----eecEEE
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGS--PLPSVFWTQEG--SQ---VLMFP---------GNAYGHLHVT-----QEGTLR   97 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~--~~---~~~~~---------~~~~~~~~~~-----~~~~l~   97 (292)
                      +...+..+.+.+|++++|.|.+.+.  +.+.+.|+|..  ..   +....         .....++...     ....|.
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   83 (242)
T 1hxm_B            4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT   83 (242)
T ss_dssp             EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred             cCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEE
Confidence            3445667788999999999999875  56789999853  11   11111         0022344333     245799


Q ss_pred             EccCCCCCCeEEEEEEEeCCc-C------eeEEEEEEEEeecC----CCCCeEEeCCCCceecCCCeEEEEeEeccC-CC
Q psy15128         98 IQGVQKEDAGFFVCSALSVAG-S------TTVRAFLQVTSVED----TPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PP  165 (292)
Q Consensus        98 i~~~~~~d~g~Y~C~~~~~~~-~------~~~~~~l~v~~~~~----~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~  165 (292)
                      |.+++.+|+|.|.|.+.+... .      ......|.|.....    .+.+.+ ..+....+..|+.++|.|.+.+. |.
T Consensus        84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v-~~p~~~~~~~g~~v~L~C~~~g~~P~  162 (242)
T 1hxm_B           84 IHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTI-FLPSIAETKLQKAGTYLCLLEKFFPD  162 (242)
T ss_dssp             ECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCC-CCCCGGGGGSSSCEEEEEEEEEESSC
T ss_pred             ECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceE-ECCChhhcccCCCceEEEEEeeEECC
Confidence            999999999999999987531 1      11224555543111    111111 22343446679999999999876 54


Q ss_pred             -CceEEEeCCe-eCC
Q psy15128        166 -PHIRWYKNGN-SLP  178 (292)
Q Consensus       166 -~~~~W~~~~~-~l~  178 (292)
                       +.+.|++++. .+.
T Consensus       163 ~~~v~W~~~~~~~l~  177 (242)
T 1hxm_B          163 VIKIHWEEKKSNTIL  177 (242)
T ss_dssp             CEEEEEEESSSCCCC
T ss_pred             CeEEEEEcCCCEeec
Confidence             6899999987 553

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.59  E-value=1.1e-14  Score=108.22  Aligned_cols=121  Identities=20%  Similarity=0.267  Sum_probs=79.7

Q ss_pred             cccCCcCCCeeEEEEEEeccc------c--cccccEEEEEeC----CCcEEeCCCccEEecCCcEEEEEEEeee-CCC-e
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVG------E--RETKPALLTVHA----PPSFVVRPQDQKVGLNGIASFQCVAEGS-PLP-S   67 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~------~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~   67 (292)
                      |.+++.+|+|.|+|.+.+..+      .  .....+.|.|..    +|.+...+....+.+|+.++|.|.+.+. |.+ .
T Consensus        84 I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~  163 (228)
T 3bae_H           84 ITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVT  163 (228)
T ss_dssp             ECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCE
T ss_pred             EcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEE
Confidence            789999999999999998654      1  122237888873    4555443333346789999999999886 777 9


Q ss_pred             eEEEECCeEEeec--cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEE
Q psy15128         68 VFWTQEGSQVLMF--PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  124 (292)
Q Consensus        68 v~W~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~  124 (292)
                      +.|++++..+...  ...... ..+...+.|.|.++..+| |.|+|.+.|..+......
T Consensus       164 v~W~~~~~~~~~~~~~~~~~~-~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~  220 (228)
T 3bae_H          164 LTWNSGSLSSGVHTFPAVLQS-DLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDK  220 (228)
T ss_dssp             EEEGGGTCCTTEEEEEEEEET-TEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             EEEeeCCcccCceEcCceeCC-CcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEE
Confidence            9999987542100  000000 112234579999988866 999999999887655443

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.58  E-value=4.2e-15  Score=91.46  Aligned_cols=74  Identities=15%  Similarity=0.117  Sum_probs=58.2

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      ..+.+.+|+.+.|.|.+ .+ |.|.+.|+|||++|..+  .++.+..++.     ...|.|..+..+|+|.|+|.|.|..
T Consensus         4 t~v~~~~G~~v~l~C~v-s~-p~p~v~W~k~g~~l~~~--~~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~n~~   74 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHL-SG-PGGPVRWYKDGERLASQ--GRVQLEQAGA-----RQVLRVQGARSGDAGEYLCDAPQDS   74 (84)
T ss_dssp             CCEEECTTSCEEEECCC-SC-CSTTCEEEETTEECCCC--SSEEEEECSS-----CEEEEESSCSSTTCEEEEEECTTTC
T ss_pred             eEEEEecCCCEEEEEEE-CC-CCcEEEEEECCEEcccc--ccEEEeecCC-----eEEEEecCCCCcccEEEEEEECCEE
Confidence            56788999999999998 66 88899999999999643  3444433322     2368999999999999999998876


Q ss_pred             ccc
Q psy15128        286 NQQ  288 (292)
Q Consensus       286 g~~  288 (292)
                      ++.
T Consensus        75 ~~a   77 (84)
T 2lu7_A           75 RIF   77 (84)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.58  E-value=1.3e-13  Score=100.75  Aligned_cols=227  Identities=15%  Similarity=0.207  Sum_probs=133.2

Q ss_pred             EEeCCCccEEecCCcEEEEEEEee-eC---CCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEG-SP---LPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~-~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      +...|....+..|+.++|.|.+.+ .|   ...++|+|++..+.            .....|.+..+...|+|.|+|.+.
T Consensus         5 Vs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~Is------------GaT~tLti~s~t~sdSG~YqCvVT   72 (304)
T 3shs_A            5 VSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHE------------NNTATLTVADATSENAGSYKVTVQ   72 (304)
T ss_dssp             EEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECS------------CCSSEEEESSCCGGGCEEEEEEEE
T ss_pred             EEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCcccc------------CCcceEEeeeccccCCeEEEEEEE
Confidence            445566777889999999998876 45   34799999997642            124478999999999999999999


Q ss_pred             eCCcCeeEEEEEEEEeecCCCCCeEEe-CCCCceecCCCeEEEEeEe--cc-CC-----CCceEEEeCCeeCCCCC----
Q psy15128        115 SVAGSTTVRAFLQVTSVEDTPPPIVQV-GPSNQTLPLHSVAFLPCQA--VG-SP-----PPHIRWYKNGNSLPPED----  181 (292)
Q Consensus       115 ~~~~~~~~~~~l~v~~~~~~~~~~~~~-~~~~~~~~~g~~v~l~C~~--~~-~p-----~~~~~W~~~~~~l~~~~----  181 (292)
                      +..+.......+.+...   ..+.+.+ .|....+..|..+.|.+.+  .+ .|     ..++.|+|++..+....    
T Consensus        73 Da~Gcs~tSs~VtVT~~---a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~IsgAq~lT~  149 (304)
T 3shs_A           73 DTDTMTSVESEVFLMEE---AELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITI  149 (304)
T ss_dssp             ETTTCCEEECCCEEECB---CCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEESSSEEEE
T ss_pred             ECCCCeeeeeeEEEecc---CceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccCccccce
Confidence            87776655444444321   1222333 3444455677889998887  43 34     45899999998775431    


Q ss_pred             ccEEEcCCCcEEEEeeecCCCC-------------------CCcceEEeCCCceEEEeeCC-------CCCCCC--eEEE
Q psy15128        182 TRINVSSSGSLQIDVLRDDFRA-------------------EPKDTRVASGETALLECGPP-------KGQPEP--TLHW  233 (292)
Q Consensus       182 ~~~~~~~~~~l~i~~~~~~d~g-------------------~~~~~~~~~g~~~~l~C~~~-------~~~p~~--~~~W  233 (292)
                      ..+.....|.+++.-- ....+                   -.....+..|+.+.|.-.+.       .|.|..  .+.|
T Consensus       150 sS~TateaG~YtV~VT-n~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (304)
T 3shs_A          150 QEFTADKNGVYTVKVW-GESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNW  228 (304)
T ss_dssp             CSCCGGGCEEEEEEEE-SSSGGGCEEEEEEEEECEEEEEECCCSEEEEETTSCEEECCEEEEECCSCCTTCCEEEEEEEE
T ss_pred             eeEEecCCeEEEEEEE-cCCCCcccccceEEEEEccccchhheEeehhhcCcEEEEEEEEeeccccCCCCCCceEEEEEE
Confidence            1111233344433321 11111                   22445677888888765421       233322  5678


Q ss_pred             eE--cCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128        234 KK--NGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK  282 (292)
Q Consensus       234 ~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~  282 (292)
                      +.  +|+.-+..-+..+-..- ..+.......|+.......|...|.|+|+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (304)
T 3shs_A          229 YLQREGQLSPTLIGSEVGEAL-EGFSITPDGHLFKESATYDDTAKFWCVAK  278 (304)
T ss_dssp             EEECTTCCSCEEEESSSEECG-GGEEECTTSCEEESSCCGGGCEEEEEEEE
T ss_pred             EEeecCccCchhhhhhhhhhh-ccceeCCCcceeecccccccchheeeHHH
Confidence            75  34321100000000000 01111222346666777888999999986

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.58  E-value=1.2e-14  Score=111.40  Aligned_cols=143  Identities=22%  Similarity=0.366  Sum_probs=93.2

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--eE--Ee-ec-c--------CCCcceeEEee----ecEEEE
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--SQ--VL-MF-P--------GNAYGHLHVTQ----EGTLRI   98 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~~--~~-~~-~--------~~~~~~~~~~~----~~~l~i   98 (292)
                      +.+...+..+.+.+|++++|.|.+.+.+.+.+.|+|+.  ..  .. .. .        .....+.....    ...|.|
T Consensus        25 ~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I  104 (279)
T 2wbj_D           25 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTV  104 (279)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEE
T ss_pred             ceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEE
Confidence            34555666788999999999999987777899999864  11  11 00 0        01123343332    348999


Q ss_pred             ccCCCCCCeEEEEEEEeCCc----Ce--eEEEEEEEEeec-CCCCCeEEe-CCCCceecCCCeEEEEeEeccC-CC-Cce
Q psy15128         99 QGVQKEDAGFFVCSALSVAG----ST--TVRAFLQVTSVE-DTPPPIVQV-GPSNQTLPLHSVAFLPCQAVGS-PP-PHI  168 (292)
Q Consensus        99 ~~~~~~d~g~Y~C~~~~~~~----~~--~~~~~l~v~~~~-~~~~~~~~~-~~~~~~~~~g~~v~l~C~~~~~-p~-~~~  168 (292)
                      .+++.+|+|.|+|.+.+..+    ..  .....|.|.... ...+|.+.+ .+....+.+|+.++|.|.+.+. |. +.+
T Consensus       105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v  184 (279)
T 2wbj_D          105 TSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL  184 (279)
T ss_dssp             SSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEE
T ss_pred             ccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEE
Confidence            99999999999999998421    11  122345554311 112344433 2333445578999999999886 43 689


Q ss_pred             EEEeCCeeCCC
Q psy15128        169 RWYKNGNSLPP  179 (292)
Q Consensus       169 ~W~~~~~~l~~  179 (292)
                      .|++++.++..
T Consensus       185 ~W~k~g~~l~~  195 (279)
T 2wbj_D          185 SWWVNGKEVHS  195 (279)
T ss_dssp             EEEETTEECCT
T ss_pred             EEEECCEECCC
Confidence            99999998865

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.58  E-value=4.5e-14  Score=106.25  Aligned_cols=115  Identities=15%  Similarity=0.230  Sum_probs=78.2

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCC-------------cEEeCCCccEEecCCcEEEEEEEeeeC--CC
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP-------------SFVVRPQDQKVGLNGIASFQCVAEGSP--LP   66 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p-------------~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~   66 (292)
                      |.+++.+|+|.|+|.+.+..+......+.|.|..++             .....+....+.+|++++|.|.+.+.+  .+
T Consensus        80 I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~  159 (247)
T 1svz_A           80 ISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDY  159 (247)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGS
T ss_pred             ECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCc
Confidence            789999999999999998754433333778887642             233344445688999999999998864  56


Q ss_pred             eeEEEECC--eEEe--e-ccC---------CCcceeEEee-----ecEEEEccCCCCCCeEEEEEEEeC
Q psy15128         67 SVFWTQEG--SQVL--M-FPG---------NAYGHLHVTQ-----EGTLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        67 ~v~W~~~~--~~~~--~-~~~---------~~~~~~~~~~-----~~~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                      .+.|+|+.  ....  . ...         ....+.....     ...|.|.+++.+|+|.|+|.+.|.
T Consensus       160 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          160 SMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             CEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             EEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            89999963  2111  0 000         0122333322     248999999999999999999985

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.58  E-value=2.6e-14  Score=101.92  Aligned_cols=105  Identities=14%  Similarity=0.182  Sum_probs=75.3

Q ss_pred             CcccCCcCCCeeEEEEEEeccccccc-ccEEEEEeCC---CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeE
Q psy15128          1 MITEVKKSDEGKYQCYVQNMVGERET-KPALLTVHAP---PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQ   76 (292)
Q Consensus         1 ~i~~v~~~D~G~Y~C~~~~~~~~~~~-~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~   76 (292)
                      .|.+++.+|+|.|+|.+.+..+.... ..+.|.|..+   |.+..        .+..++|.|.+.+.|.+.|.|++++..
T Consensus        69 ~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~~p~~~~~W~~~g~~  140 (182)
T 1hnf_A           69 KIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISW--------TCINTTLTCEVMNGTDPELNLYQDGKH  140 (182)
T ss_dssp             EECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECCCCCCEEEE--------ETTTTEEEEECSSCSSCEEEEEESSCE
T ss_pred             EECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCcCCCCEEEE--------ccCcEEEEeEccCCCCCEEEEEECCEE
Confidence            37899999999999999997766432 3367888753   22221        344789999999888889999999876


Q ss_pred             EeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEE
Q psy15128         77 VLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL  126 (292)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l  126 (292)
                      +. .           ....|.+.. ..+|.|.|+|.|.|..+.......+
T Consensus       141 l~-~-----------~~~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~  177 (182)
T 1hnf_A          141 LK-L-----------SQRVITHKW-TTSLSAKFKCTAGNKVSKESSVEPV  177 (182)
T ss_dssp             EE-E-----------ESSCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred             CC-C-----------CCcEEEEec-ccCCCcEEEEEEEeCCCCcEEccee
Confidence            51 0           122333332 4789999999999998876655443

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.58  E-value=7.2e-15  Score=109.00  Aligned_cols=119  Identities=16%  Similarity=0.262  Sum_probs=79.5

Q ss_pred             cccCCcCCCeeEEEEEEeccc-----c--cccccEEEEEeC----CCcEEeCCCccEEecCCcEEEEEEEeee-CCC-ee
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVG-----E--RETKPALLTVHA----PPSFVVRPQDQKVGLNGIASFQCVAEGS-PLP-SV   68 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~-----~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v   68 (292)
                      |.+++.+|+|.|+|.+.+..+     .  .....+.|.|..    +|.+........+.+|+.++|.|.+.+. |.+ .+
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v  162 (225)
T 1op3_H           83 MHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV  162 (225)
T ss_dssp             ECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEE
T ss_pred             ECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEE
Confidence            789999999999999998754     1  122337888875    3444432222235679999999999886 766 99


Q ss_pred             EEEECCeEEee--ccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCee
Q psy15128         69 FWTQEGSQVLM--FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT  121 (292)
Q Consensus        69 ~W~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~  121 (292)
                      .|++++..+..  ..............+.|.|.++..+| |.|+|.+.|..+...
T Consensus       163 ~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  216 (225)
T 1op3_H          163 SWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  216 (225)
T ss_dssp             ECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred             EEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence            99998864210  00000000112234578999998888 999999999765544

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.58  E-value=4.5e-14  Score=101.95  Aligned_cols=119  Identities=13%  Similarity=0.063  Sum_probs=84.6

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeee-CC----CeeEEEECCeE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGS-PL----PSVFWTQEGSQ   76 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~----~~v~W~~~~~~   76 (292)
                      |.+++.+|+|.|.|.+.+..+..... +.|.|..+|........ .+..|+.+ |.|.+.+. |.    +.+.|+|++..
T Consensus        63 I~~v~~~d~G~Y~C~a~n~~~~~~~~-~~ltV~~~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~  139 (210)
T 1gsm_A           63 VRNASLSAAGTRVCVGSCGGRTFQHT-VQLLVYAFPNQLTVSPA-ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQE  139 (210)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEE-EEEEEEBCCSEEEEESS-SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEE
T ss_pred             ECccCcccCceEEEEEEeCCCceEEE-EEEEEEecCCCcEEccc-eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEE
Confidence            78999999999999999987665444 99999999876543222 56678888 99999885 64    37999999987


Q ss_pred             EeeccC-C-----------CcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEE
Q psy15128         77 VLMFPG-N-----------AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  123 (292)
Q Consensus        77 ~~~~~~-~-----------~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~  123 (292)
                      +..... .           ......+...+.|.+.....++.+.|+|.|.+........
T Consensus       140 L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~~~~  198 (210)
T 1gsm_A          140 LEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELS  198 (210)
T ss_dssp             CTTCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTEEEE
T ss_pred             cccccccccceecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCCCccc
Confidence            632110 0           0011233444567777777788899999999876544433

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.57  E-value=6e-15  Score=97.03  Aligned_cols=79  Identities=19%  Similarity=0.219  Sum_probs=58.0

Q ss_pred             CCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        212 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      .+..+.|.|.| .|.|.|.|+|+|||++|..+....................|.|..+...|+|.|+|+|+|.+|+++++
T Consensus        14 ~~~~~~l~c~v-~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t   92 (126)
T 1he7_A           14 EMHHWCIPFSV-DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS   92 (126)
T ss_dssp             CCCEEEEEEEE-CCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             cCccEEEEEEE-eeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEE
Confidence            56788999998 99999999999999999643333333322100000112358899999999999999999999998653

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.57  E-value=3e-14  Score=107.77  Aligned_cols=116  Identities=16%  Similarity=0.293  Sum_probs=80.9

Q ss_pred             cccCCcCCCeeEEEEEEeccccc---ccccEEEEEeC--------------------CCcEEeCCCccEEecCCcEEEEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGER---ETKPALLTVHA--------------------PPSFVVRPQDQKVGLNGIASFQC   58 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~---~~~~~~l~v~~--------------------~p~~~~~~~~~~~~~g~~~~l~C   58 (292)
                      |.+++++|+|.|+|.+.+..+..   ....+.|.|..                    +|.+...+....+.+|+.++|.|
T Consensus        80 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C  159 (256)
T 3tf7_C           80 KASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSC  159 (256)
T ss_dssp             ESSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECE
T ss_pred             ECCCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEE
Confidence            78999999999999999865421   22236777775                    55677777778888999999999


Q ss_pred             EEeeeCCCeeEEEECC--eEE--ee-ccCC-------CcceeEE----eeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128         59 VAEGSPLPSVFWTQEG--SQV--LM-FPGN-------AYGHLHV----TQEGTLRIQGVQKEDAGFFVCSALSVAG  118 (292)
Q Consensus        59 ~~~~~~~~~v~W~~~~--~~~--~~-~~~~-------~~~~~~~----~~~~~l~i~~~~~~d~g~Y~C~~~~~~~  118 (292)
                      .+.+. .+.+.|+|..  ...  .. ....       ...++..    .....|.|.+++.+|+|.|+|.+.|..+
T Consensus       160 ~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g  234 (256)
T 3tf7_C          160 RQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPG  234 (256)
T ss_dssp             EECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETT
T ss_pred             EcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCC
Confidence            99876 6789999842  111  10 0000       0111111    1234799999999999999999988655

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.57  E-value=1.7e-14  Score=111.24  Aligned_cols=115  Identities=18%  Similarity=0.276  Sum_probs=79.1

Q ss_pred             cccCCcCCCeeEEEEEEecc-c---ccccccEEEEEeC----------------CCcEEeCCCccEEecCCcEEEEEEEe
Q psy15128          2 ITEVKKSDEGKYQCYVQNMV-G---ERETKPALLTVHA----------------PPSFVVRPQDQKVGLNGIASFQCVAE   61 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~-~---~~~~~~~~l~v~~----------------~p~~~~~~~~~~~~~g~~~~l~C~~~   61 (292)
                      |.+++.+|+|.|+|.+.+.. +   ......+.|.|..                ++.+...+....+.+|++++|.|.+.
T Consensus       105 I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~  184 (291)
T 2gki_A          105 LSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSS  184 (291)
T ss_dssp             ECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEES
T ss_pred             ECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcC
Confidence            78999999999999999864 1   1112236788876                23344456667889999999999998


Q ss_pred             eeCCC------eeEEEECC--eEE--eeccC-----CCcceeEEe---eecEEEEccCCCCCCeEEEEEEEeC
Q psy15128         62 GSPLP------SVFWTQEG--SQV--LMFPG-----NAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        62 ~~~~~------~v~W~~~~--~~~--~~~~~-----~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                      +.+.+      .+.|+|+.  ...  .....     ....++...   ....|.|.+++.+|+|.|+|.+.+.
T Consensus       185 ~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  257 (291)
T 2gki_A          185 QSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYY  257 (291)
T ss_dssp             SCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccC
Confidence            87654      89999963  211  11100     001222222   2347999999999999999999874

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.56  E-value=2.6e-14  Score=102.00  Aligned_cols=101  Identities=19%  Similarity=0.134  Sum_probs=72.1

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEE-eeeCCCeeEEEECCeEEeec
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA-EGSPLPSVFWTQEGSQVLMF   80 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~   80 (292)
                      |.+++.+|+|.|+|.+.+.. . ....+.|.|..++..     +.....+..++|.|.+ .+ |.+.+.|++++..+.  
T Consensus        73 I~~v~~~D~G~Y~C~v~~~~-~-~~~~~~L~V~~~~~~-----P~i~~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~--  142 (180)
T 2dru_A           73 IYNVSKEDRGDYYMRMLHET-E-DQWKITMEVYEMVSK-----PMIYWECSNATLTCEVLEG-TDVELKLYQGKEHLR--  142 (180)
T ss_dssp             ECSCCGGGCEEEEEEEESSS-E-EEEEEEEEEECCCCC-----CEEEEEGGGTEEEEECSSC-TTCEEEEEETTEEEE--
T ss_pred             EcCCCHHHCeEEEEEEEcCC-e-EEEEEEEEEECCCCC-----CEEEecCCCEEEEEEeCCC-CCCEEEEEECCeECc--
Confidence            78999999999999997765 3 333378888764321     1112245679999999 56 889999999998763  


Q ss_pred             cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEE
Q psy15128         81 PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  123 (292)
Q Consensus        81 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~  123 (292)
                               ...+..|.+..  .+|+|.|+|.|.|..+.....
T Consensus       143 ---------~~~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~  174 (180)
T 2dru_A          143 ---------SLRQKTMSYQW--TNLRAPFKCKAVNRVSQESEM  174 (180)
T ss_dssp             ---------EESSSEEEEEC--SCCSSCEEEEEEETTEEEEEE
T ss_pred             ---------CCCCCEEEEEE--hhcCccEEEEEecCcCccccc
Confidence                     11234566533  789999999999987765443

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.56  E-value=5.9e-14  Score=91.26  Aligned_cols=92  Identities=26%  Similarity=0.308  Sum_probs=68.7

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCC---CeeEEEECCeEEeeccCCCcceeEE---------eeecEEEEccCCC
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPL---PSVFWTQEGSQVLMFPGNAYGHLHV---------TQEGTLRIQGVQK  103 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~---------~~~~~l~i~~~~~  103 (292)
                      .|.+...|....+.+|++++|.|.+.+.|.   +.+.|+|++.... .. ....+...         .....|.|.+++.
T Consensus         4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   81 (108)
T 3cx2_A            4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDL-SS-KVGQHLQLHDSYDRASKVYLFELHITDAQP   81 (108)
T ss_dssp             CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEG-GG-GCBTTEEEEEEEETTTTEEEEEEEECSCCG
T ss_pred             ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccc-cc-cCCceEEEeeEEecccccceEEEEEecCCC
Confidence            466777788888999999999999999887   8999999763211 10 00111111         1245899999999


Q ss_pred             CCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128        104 EDAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus       104 ~d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      +|+|.|+|.+.|..|.....+.|.|.
T Consensus        82 ~D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           82 AFTGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             ccCEEEEEEEecCCCceEEEEEEEEe
Confidence            99999999999999988877777764

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.56  E-value=1.2e-14  Score=106.32  Aligned_cols=137  Identities=12%  Similarity=0.127  Sum_probs=82.0

Q ss_pred             cCCCeEEEEeEeccCCC----CceEEEeCCeeCCCCC-ccEEEcCCCcEEEEee---ecCC---CCCC------------
Q psy15128        149 PLHSVAFLPCQAVGSPP----PHIRWYKNGNSLPPED-TRINVSSSGSLQIDVL---RDDF---RAEP------------  205 (292)
Q Consensus       149 ~~g~~v~l~C~~~~~p~----~~~~W~~~~~~l~~~~-~~~~~~~~~~l~i~~~---~~~d---~g~~------------  205 (292)
                      .+|+.++|.|.+.+.++    +.+.|+|++.++.... .......++.|.+...   ...|   +|.|            
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~   95 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP   95 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence            68999999999987742    4899999998765421 1111223444544331   1222   5521            


Q ss_pred             --------------cceEEe-------CCCceEEEeeCCCC-CCC-CeEEEeEcCeEeccCCCceEEecCCCcccccccc
Q psy15128        206 --------------KDTRVA-------SGETALLECGPPKG-QPE-PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSR  262 (292)
Q Consensus       206 --------------~~~~~~-------~g~~~~l~C~~~~~-~p~-~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  262 (292)
                                    +.+.+.       .|..+.|.|.+ .| +|+ +.+.|+++|.++......+.....++.+...  .
T Consensus        96 ~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~-~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~--s  172 (207)
T 1l6x_A           96 IEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLV-KGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLY--S  172 (207)
T ss_dssp             EEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEE-EEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEE--E
T ss_pred             eEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEE-eCeECCCeEEEEEECCeeccCccccCceECCCCCEEEE--E
Confidence                          111111       25669999998 55 555 4999999999885211112223344433321  2


Q ss_pred             ccccccccccccceeEEEEeeccccc
Q psy15128        263 SIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       263 ~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      .|.+......|.|.|+|.|.|.....
T Consensus       173 ~l~i~~~~~~~~g~YtC~a~n~~l~~  198 (207)
T 1l6x_A          173 KLTVDKSRWQQGNVFSCSVMHEALHN  198 (207)
T ss_dssp             EEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred             EEEECHHHcCCCCEEEEEEEcCCcCC
Confidence            34444445567999999999987643

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.56  E-value=5.4e-14  Score=104.73  Aligned_cols=126  Identities=13%  Similarity=0.178  Sum_probs=79.1

Q ss_pred             cccCCcCCCeeEEEEEEeccc--c---cccccEEEEEeC----CCcEEeCCCccEEecC-CcEEEEEEEeee-CCC-eeE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVG--E---RETKPALLTVHA----PPSFVVRPQDQKVGLN-GIASFQCVAEGS-PLP-SVF   69 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~--~---~~~~~~~l~v~~----~p~~~~~~~~~~~~~g-~~~~l~C~~~~~-~~~-~v~   69 (292)
                      |.+++.+|+|.|+|.+.+..+  .   .....+.|.|..    +|.+........+..| +.++|.|.+.+. |.+ .+.
T Consensus        82 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~  161 (232)
T 1dn0_B           82 LSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFS  161 (232)
T ss_dssp             ECSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEE
T ss_pred             ECCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEE
Confidence            789999999999999984221  1   122337888875    2444322212234578 999999999886 766 999


Q ss_pred             EEE-CCeEEeecc--CCCcceeEEeeecEEEEccCCC--CCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128         70 WTQ-EGSQVLMFP--GNAYGHLHVTQEGTLRIQGVQK--EDAGFFVCSALSVAGSTTVRAFLQ  127 (292)
Q Consensus        70 W~~-~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~--~d~g~Y~C~~~~~~~~~~~~~~l~  127 (292)
                      |++ ++..+....  ............+.|.|.+...  +|.|.|+|.+.|..+.......+.
T Consensus       162 W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~  224 (232)
T 1dn0_B          162 WKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLP  224 (232)
T ss_dssp             EEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECC
T ss_pred             EEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecC
Confidence            999 887653200  0000001223345789998887  889999999999887765555443

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.56  E-value=8.5e-14  Score=105.74  Aligned_cols=115  Identities=14%  Similarity=0.169  Sum_probs=78.5

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCC------------------cE-EeCCCccEEecCCcEEEEEEEee
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP------------------SF-VVRPQDQKVGLNGIASFQCVAEG   62 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p------------------~~-~~~~~~~~~~~g~~~~l~C~~~~   62 (292)
                      |.+++++|+|.|+|.+.+..+......+.|.|..+|                  .+ ...+....+.+|++++|.|.+.+
T Consensus        85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~  164 (264)
T 2gjj_A           85 IGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASG  164 (264)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEES
T ss_pred             ECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeC
Confidence            789999999999999988654333333778887653                  22 22333457889999999999987


Q ss_pred             eCC--CeeEEEECC--eE---Eee-ccCC--------CcceeEEe-----eecEEEEccCCCCCCeEEEEEEEeC
Q psy15128         63 SPL--PSVFWTQEG--SQ---VLM-FPGN--------AYGHLHVT-----QEGTLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        63 ~~~--~~v~W~~~~--~~---~~~-~~~~--------~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                      .+.  +.+.|+|+.  ..   +.. ....        ...+....     ....|.|.+++.+|+|.|+|.+.|.
T Consensus       165 ~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          165 YSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             SCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            653  789999963  21   110 0100        01222222     1348999999999999999999985

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.56  E-value=1.4e-14  Score=92.89  Aligned_cols=79  Identities=18%  Similarity=0.355  Sum_probs=63.5

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+............++.      ..|.|..+...|+|.|+|.|.|.
T Consensus        12 p~~~~~~~G~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~------~~L~i~~v~~~D~G~Y~C~a~n~   84 (100)
T 2kdg_A           12 PENMSIDEGRFCRMDFKV-SGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL------HSLIFEVVRASDAGAYACVAKNR   84 (100)
T ss_dssp             CCCEEEETTCCEEEEEEC-EEESCCEEEEEETTEEECCCSSSCEEEETTTE------EEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEecCCCEEEEEEEE-EeeCCCEEEEEECCEECcCCCcEEEEEcCCCe------EEEEECCCCcccCEEEEEEEEcC
Confidence            456788999999999998 78999999999999998654443444333321      25889999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      .|..+.
T Consensus        85 ~g~~~~   90 (100)
T 2kdg_A           85 AGEATF   90 (100)
T ss_dssp             TEEEEE
T ss_pred             CCeEEE
Confidence            998754

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.56  E-value=2.2e-13  Score=101.86  Aligned_cols=134  Identities=16%  Similarity=0.213  Sum_probs=82.1

Q ss_pred             CCccEEecCCcEEEEEEEeeeC----CCeeEEEECC--e---EEeecc--------------CCCcceeEEeee-----c
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSP----LPSVFWTQEG--S---QVLMFP--------------GNAYGHLHVTQE-----G   94 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~----~~~v~W~~~~--~---~~~~~~--------------~~~~~~~~~~~~-----~   94 (292)
                      +....+.+|++++|.|.+.+.+    ...+.|+|..  .   .+....              .....++....+     .
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   86 (239)
T 3tv3_H            7 SGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLV   86 (239)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEE
T ss_pred             CCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEE
Confidence            4456788999999999998754    3489999842  1   110011              111234433322     3


Q ss_pred             EEEEccCCCCCCeEEEEEEEeCCc-----------C--eeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEec
Q psy15128         95 TLRIQGVQKEDAGFFVCSALSVAG-----------S--TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAV  161 (292)
Q Consensus        95 ~l~i~~~~~~d~g~Y~C~~~~~~~-----------~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~  161 (292)
                      .|.|.+++.+|+|.|.|.+.+..+           .  ......+.|.. .....|.+...+....+..|+.++|.|.+.
T Consensus        87 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~-~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~  165 (239)
T 3tv3_H           87 FLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSS-ASTKGPSVFPLAPSSKSTSGGTAALGCLVK  165 (239)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECC-CCCBCCEEEEECCCCCC--TTEEEEEEEEE
T ss_pred             EEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeecc-CCCcCCEEEEECCChhhccCCcEEEEEEEe
Confidence            599999999999999999976421           0  11122344432 122344444333434456799999999998


Q ss_pred             cC-CCC-ceEEEeCCeeC
Q psy15128        162 GS-PPP-HIRWYKNGNSL  177 (292)
Q Consensus       162 ~~-p~~-~~~W~~~~~~l  177 (292)
                      +. |.+ .+.|++++..+
T Consensus       166 ~~~p~~~~v~W~~~g~~~  183 (239)
T 3tv3_H          166 DYFPEPVTVSWNSGALTS  183 (239)
T ss_dssp             EEBSSCCEEEEGGGTBCT
T ss_pred             eEeCCCeEEEEEECCccC
Confidence            74 544 48899988654

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.55  E-value=4e-14  Score=107.87  Aligned_cols=115  Identities=19%  Similarity=0.332  Sum_probs=75.5

Q ss_pred             cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCc-----------------------EEeCCCccEEecCCcEEEEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS-----------------------FVVRPQDQKVGLNGIASFQC   58 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-----------------------~~~~~~~~~~~~g~~~~l~C   58 (292)
                      |.+++.+|+|.|+|.+.+..+......+.|.|..++.                       ....+....+.+|++++|.|
T Consensus        94 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C  173 (268)
T 1x9q_A           94 INRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSC  173 (268)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEE
T ss_pred             ECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEE
Confidence            7899999999999999886543233336677764321                       12234456788999999999


Q ss_pred             EEeeeC--CCeeEEEEC--CeEEe-e--c-----------cCCCcceeEEee-----ecEEEEccCCCCCCeEEEEEEEe
Q psy15128         59 VAEGSP--LPSVFWTQE--GSQVL-M--F-----------PGNAYGHLHVTQ-----EGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        59 ~~~~~~--~~~v~W~~~--~~~~~-~--~-----------~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      .+.+.+  .+.+.|+|+  +.... .  .           ......+.....     ...|.|.+++.+|+|.|+|.+.+
T Consensus       174 ~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~  253 (268)
T 1x9q_A          174 VTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGAS  253 (268)
T ss_dssp             EEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEcc
Confidence            998765  368999985  22211 1  0           011223333332     24799999999999999999986


Q ss_pred             C
Q psy15128        116 V  116 (292)
Q Consensus       116 ~  116 (292)
                      .
T Consensus       254 ~  254 (268)
T 1x9q_A          254 Y  254 (268)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=1.1e-14  Score=95.10  Aligned_cols=92  Identities=21%  Similarity=0.403  Sum_probs=72.5

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEee--e--cEEEEccCCCCCCeEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ--E--GTLRIQGVQKEDAGFFV  110 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~d~g~Y~  110 (292)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...    ..+.....  +  ..|.|.+++.+|+|.|+
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~----~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~   82 (110)
T 2dm2_A            7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPK----SDHYTIQRDLDGTCSLHTTASTLDDDGNYT   82 (110)
T ss_dssp             CCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTT----CSSEEEEECTTCEEEEEESSCCTTTCSCCE
T ss_pred             CCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCC----CCeEEEEECCCcEEEEEECCCChhhCEEEE
Confidence            4677777777888999999999999999999999999998765321    11222221  2  37999999999999999


Q ss_pred             EEEEeCCcCeeEEEEEEEEe
Q psy15128        111 CSALSVAGSTTVRAFLQVTS  130 (292)
Q Consensus       111 C~~~~~~~~~~~~~~l~v~~  130 (292)
                      |.+.|..|.....+.|.|..
T Consensus        83 C~a~N~~g~~~~~~~l~V~~  102 (110)
T 2dm2_A           83 IMAANPQGRISCTGRLMVQA  102 (110)
T ss_dssp             EEEECTTCCEEECCCEEEEC
T ss_pred             EEEEECCCeEEEEEEEEEEC
Confidence            99999999887777777764

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.55  E-value=4e-13  Score=99.99  Aligned_cols=135  Identities=14%  Similarity=0.221  Sum_probs=82.5

Q ss_pred             CCccEEecCCcEEEEEEEeeeC--CCeeEEEECC--e--E-Eeecc--------CCCcceeEEee-----ecEEEEccCC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSP--LPSVFWTQEG--S--Q-VLMFP--------GNAYGHLHVTQ-----EGTLRIQGVQ  102 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~--~-~~~~~--------~~~~~~~~~~~-----~~~l~i~~~~  102 (292)
                      +....+.+|++++|.|.+.+.+  .+.+.|+|..  .  . +....        .....++....     ...|+|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (232)
T 1dn0_B            7 WGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVT   86 (232)
T ss_dssp             ECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCC
Confidence            3456788999999999998754  5689999853  1  1 11110        01123444332     2389999999


Q ss_pred             CCCCeEEEEEEEeCC--cC----eeEEEEEEEEeecCCCCCeEEe-CCCCceecCC-CeEEEEeEeccC-CCC-ceEEEe
Q psy15128        103 KEDAGFFVCSALSVA--GS----TTVRAFLQVTSVEDTPPPIVQV-GPSNQTLPLH-SVAFLPCQAVGS-PPP-HIRWYK  172 (292)
Q Consensus       103 ~~d~g~Y~C~~~~~~--~~----~~~~~~l~v~~~~~~~~~~~~~-~~~~~~~~~g-~~v~l~C~~~~~-p~~-~~~W~~  172 (292)
                      .+|+|.|.|.+.+..  +.    ......|.|.... ..+|.+.. .+. ..+..| +.++|.|.+.+. |.+ .+.|++
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~-~~~P~v~~~~p~-~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~  164 (232)
T 1dn0_B           87 AADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGS-ASAPTLFPLVSC-ENSPSDTSSVAVGCLAQDFLPDSITFSWKY  164 (232)
T ss_dssp             GGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSC-CBCCEEEEEECC-------CCSEEEEEEEEEEBSSCCEEEEEE
T ss_pred             cccCEEEEEEEecCCcCCchhhhcccceEEEEccCC-CCCCceEEeccc-cccCCCCCcEEEEEEEEEEeCCCeEEEEEc
Confidence            999999999998321  11    1123455554311 12233332 223 234578 999999999876 766 899999


Q ss_pred             -CCeeCCC
Q psy15128        173 -NGNSLPP  179 (292)
Q Consensus       173 -~~~~l~~  179 (292)
                       +|..+..
T Consensus       165 ~~g~~l~~  172 (232)
T 1dn0_B          165 KNNSDISS  172 (232)
T ss_dssp             TTSCEECC
T ss_pred             CCCCceee
Confidence             8887754

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.55  E-value=7.2e-15  Score=91.89  Aligned_cols=72  Identities=14%  Similarity=0.232  Sum_probs=55.7

Q ss_pred             EEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128        209 RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       209 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      .+.+|+.+.|.|.+ .+ |.+.+.|+|||++|..+  .++.+..++.     ...|.|..+..+|+|.|+|.|.|..++.
T Consensus        17 ~~~~g~~v~l~C~v-~~-p~~~v~W~k~g~~i~~~--~~~~i~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~n~~~~~   87 (91)
T 2lvc_A           17 HAITSECVMLACEV-DR-EDAPVRWYKDGQEVEES--DFVVLENEGP-----HRRLVLPATQPSDGGEFQCVAGDECAYF   87 (91)
T ss_dssp             ECCTTCCEEEEEEC-SC-TTSCCEEEETTSCCCCC--SSCEEEEETT-----EEEEEESSCCGGGCSEEEEECSSCEEEE
T ss_pred             EEECCCcEEEEEEE-CC-CCcEEEEEECCEEeeee--eeeeEEecCC-----eEEEEeCCCChhhcEEEEEEEcceEEEE
Confidence            45689999999998 55 77899999999999643  3333333321     2368999999999999999999987765


Q ss_pred             c
Q psy15128        289 Q  289 (292)
Q Consensus       289 ~  289 (292)
                      .
T Consensus        88 ~   88 (91)
T 2lvc_A           88 T   88 (91)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.55  E-value=4.6e-14  Score=98.03  Aligned_cols=97  Identities=29%  Similarity=0.433  Sum_probs=77.1

Q ss_pred             EEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEe----eecEEEEccCCCC
Q psy15128         29 ALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT----QEGTLRIQGVQKE  104 (292)
Q Consensus        29 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~  104 (292)
                      ..+.+..+|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+..     ..+....    ....|.|.+++..
T Consensus        34 ~~~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~-----~~~~~~~~~~~~~~~L~I~~v~~~  108 (154)
T 1fhg_A           34 AEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKE-----SRHFQIDYDEEGNCSLTISEVCGD  108 (154)
T ss_dssp             CCCCCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCC-----SSSEEEEECTTCEEEEEESSCCGG
T ss_pred             hcccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCC-----CCcEEEEECCCCeEEEEECCCChh
Confidence            334445678888888888999999999999999999999999999987631     1122221    2348999999999


Q ss_pred             CCeEEEEEEEeCCcCeeEEEEEEEEe
Q psy15128        105 DAGFFVCSALSVAGSTTVRAFLQVTS  130 (292)
Q Consensus       105 d~g~Y~C~~~~~~~~~~~~~~l~v~~  130 (292)
                      |.|.|+|.+.|..|.....+.|.|..
T Consensus       109 D~G~Y~C~a~N~~G~~~~~~~l~V~~  134 (154)
T 1fhg_A          109 DDAKYTCKAVNSLGEATCTAELLVET  134 (154)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             cCEEEEEEEEECCCeEEEEEEEEEeC
Confidence            99999999999998877777777764

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.55  E-value=1.1e-15  Score=114.01  Aligned_cols=171  Identities=13%  Similarity=0.098  Sum_probs=85.5

Q ss_pred             eEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCce-ecCCCeEEEEeEeccCC----CCceEEEeCCeeCCCCC
Q psy15128        107 GFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQT-LPLHSVAFLPCQAVGSP----PPHIRWYKNGNSLPPED  181 (292)
Q Consensus       107 g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~-~~~g~~v~l~C~~~~~p----~~~~~W~~~~~~l~~~~  181 (292)
                      |.|.|.+.+..+.  ......+     .++.+....|.... +..|+.++|.|.+.+++    ...+.|+++|.++....
T Consensus         1 ~~~~~~~~~~~~~--c~~~~~~-----~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~   73 (240)
T 4acp_A            1 GTKSCDKTHTCPP--CPAPELL-----GGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAK   73 (240)
T ss_dssp             -----------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCE
T ss_pred             CceeeeeeecCCC--CCccccC-----CCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCce
Confidence            6799998876553  1111111     12444455555555 56799999999998874    23699999998875421


Q ss_pred             c-cEEEcCCCc------EEEEeeecCCCC--------------------------CCcceEE-------eCCCceEEEee
Q psy15128        182 T-RINVSSSGS------LQIDVLRDDFRA--------------------------EPKDTRV-------ASGETALLECG  221 (292)
Q Consensus       182 ~-~~~~~~~~~------l~i~~~~~~d~g--------------------------~~~~~~~-------~~g~~~~l~C~  221 (292)
                      . ......++.      |.|.....+|.|                          .++.+.+       ..|+.++|.|.
T Consensus        74 ~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~  153 (240)
T 4acp_A           74 TKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCL  153 (240)
T ss_dssp             ECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEE
T ss_pred             eccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEE
Confidence            0 000111221      222222222222                          1111222       13789999999


Q ss_pred             CCCCCCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        222 PPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       222 ~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      +...+|.+ .+.|+++|+.+............++.+...  ..|.+......+.|.|+|.|+|..-
T Consensus       154 ~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~--s~L~v~~~~~~~~~~ytC~V~h~~l  217 (240)
T 4acp_A          154 VKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLY--SKLTVDKSRWQQGNVFSCSVMHEAL  217 (240)
T ss_dssp             EEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEE--EEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             EeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEE--EEEEEChHHhCCCCEEEEEEEECCC
Confidence            94336654 899999999874222222333444444322  2445555555678999999998764

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.55  E-value=1.3e-14  Score=92.94  Aligned_cols=79  Identities=19%  Similarity=0.207  Sum_probs=61.7

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+.............      ....|.|..+..+|+|.|+|.|.|.
T Consensus        12 ~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~------~~~~L~i~~v~~~D~G~Y~C~a~N~   84 (99)
T 1g1c_A           12 IQSQTVGQGSDAHFRVRV-VGKPDPECEWYKNGVKIERSDRIYWYWPED------NVCELVIRDVTGEDSASIMVKAINI   84 (99)
T ss_dssp             CCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEEEET------TEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CcceEEcCCCcEEEEEEE-EEeCCCEEEEEECCEECCCCCCEEEEEcCC------CEEEEEECCCCcCCCEEEEEEEEEC
Confidence            356788999999999998 799999999999999986333222221112      1235889999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      .|....
T Consensus        85 ~g~~~~   90 (99)
T 1g1c_A           85 AGETSS   90 (99)
T ss_dssp             TEEEEE
T ss_pred             CCcEEE
Confidence            998764

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.54  E-value=1.8e-15  Score=113.07  Aligned_cols=148  Identities=14%  Similarity=0.086  Sum_probs=89.4

Q ss_pred             eEEeCCCCce-ecCCCeEEEEeEeccC---CCC-ceEEEeCCeeCCCCCc--cEEE-----cCCCcEEEEeeecCCCCCC
Q psy15128        138 IVQVGPSNQT-LPLHSVAFLPCQAVGS---PPP-HIRWYKNGNSLPPEDT--RINV-----SSSGSLQIDVLRDDFRAEP  205 (292)
Q Consensus       138 ~~~~~~~~~~-~~~g~~v~l~C~~~~~---p~~-~~~W~~~~~~l~~~~~--~~~~-----~~~~~l~i~~~~~~d~g~~  205 (292)
                      ++...+.... +.+|+.++|.|.+.+.   |.+ .+.|++++..+.....  ....     .....|.|.++..+|+|.|
T Consensus        18 v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y   97 (239)
T 1i1c_A           18 VFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTF   97 (239)
T ss_dssp             EEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCE
T ss_pred             EEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeE
Confidence            3333344333 7799999999999876   666 8999998866543210  0000     0112577777777777722


Q ss_pred             --------------------------cceEE-------eCCCceEEEeeCCCC-CCC-CeEEEeEcCeEeccCCCceEEe
Q psy15128        206 --------------------------KDTRV-------ASGETALLECGPPKG-QPE-PTLHWKKNGQFIDLESSKRVSI  250 (292)
Q Consensus       206 --------------------------~~~~~-------~~g~~~~l~C~~~~~-~p~-~~~~W~~~g~~~~~~~~~~~~~  250 (292)
                                                +.+.+       ..|+.+.|.|.+ .| +|+ +.+.|+++|+.+......+...
T Consensus        98 ~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~-~g~~P~~~~v~W~k~g~~l~~~~~~~~~~  176 (239)
T 1i1c_A           98 KCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMV-KGFYPPDIYTEWKMNGQPQENYKNTPPTM  176 (239)
T ss_dssp             EEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEE-EEEBSSCCEEEEEETTEECSSEEECCCEE
T ss_pred             EEEEecccCCCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEE-eeeECCCeEEEEEECCEECCCceecCceE
Confidence                                      11111       136789999998 55 565 4899999999884221122223


Q ss_pred             cCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128        251 LGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       251 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      ..++.+...  ..|.+......|.|.|+|.|.|.....
T Consensus       177 ~~dgt~~~~--s~l~v~~~~~~~~g~YtC~v~n~~l~~  212 (239)
T 1i1c_A          177 DTDGSYFLY--SKLNVKKETWQQGNTFTCSVLHEGLEN  212 (239)
T ss_dssp             CTTSCEEEE--EEEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred             CCCCCEEEE--EEEEEChhhcCCCCEEEEEEECCCCCC
Confidence            344433321  233444444456999999999987543

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.54  E-value=2.1e-15  Score=110.97  Aligned_cols=135  Identities=24%  Similarity=0.358  Sum_probs=87.9

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCC---CeeEEEECCeEEeec-cC----CCcceeEEeeecEEEEccCCCCCCeEEEE
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPL---PSVFWTQEGSQVLMF-PG----NAYGHLHVTQEGTLRIQGVQKEDAGFFVC  111 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~---~~v~W~~~~~~~~~~-~~----~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C  111 (292)
                      ...|....+.+|+.++|.|.+.+.++   +.+.| ++ ...... ..    ...+.  ......|.|.+++.+|.|.|+|
T Consensus         8 ~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~~-~~~~~~~~~~~~~~~~g~--~~~~~~L~I~~~~~~D~g~Y~C   83 (214)
T 1ow0_A            8 LHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-TP-SSGKSAVQGPPERDLCGC--YSVSSVLPGCAEPWNHGKTFTC   83 (214)
T ss_dssp             EECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-SS-CSSCCCEECCCCCCSTTC--CCEEEECTTTHHHHHHTCEEEE
T ss_pred             EECcChHHhccCCCcEEEEEEeeeECCCCeEEEE-cC-CCCCCcccCCceECCCCc--EEEEEEEEEeHHHcCCCCeEEE
Confidence            34466677889999999999988643   68999 43 222100 00    00111  1234578888899999999999


Q ss_pred             EEEeCCcCeeEEEEEEEEeecCCCCCeEE-eCCCCceecCCCeEEEEeEeccC-CC-CceEEEeCCeeCCCC
Q psy15128        112 SALSVAGSTTVRAFLQVTSVEDTPPPIVQ-VGPSNQTLPLHSVAFLPCQAVGS-PP-PHIRWYKNGNSLPPE  180 (292)
Q Consensus       112 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~~~~~~~~~g~~v~l~C~~~~~-p~-~~~~W~~~~~~l~~~  180 (292)
                      .+.+..+.......+.+  .....+|.+. ..+....+..|+.++|.|.+.++ |. +.+.|+++|..+...
T Consensus        84 ~~~~~~~~~~~~~~i~~--~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~  153 (214)
T 1ow0_A           84 TAAYPESKTPLTATLSK--SGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPRE  153 (214)
T ss_dssp             EECCSSCSSCEEEEEEC--CSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGG
T ss_pred             EEecCCCCCceeEeecc--CCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCC
Confidence            99987664433333321  1112344443 33444446789999999999885 43 489999999987653

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.54  E-value=6.9e-14  Score=103.39  Aligned_cols=116  Identities=19%  Similarity=0.266  Sum_probs=78.9

Q ss_pred             cccCCcCCCeeEEEEEEeccc-ccccccEEEEEeC----CCcEE-eCCCccEEecCCcEEEEEEEee-eCC--CeeEEEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVG-ERETKPALLTVHA----PPSFV-VRPQDQKVGLNGIASFQCVAEG-SPL--PSVFWTQ   72 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~-~~~~~~~~l~v~~----~p~~~-~~~~~~~~~~g~~~~l~C~~~~-~~~--~~v~W~~   72 (292)
                      |.+++.+|+|.|+|.+.+... ......+.|.|..    +|.+. ..+...  .+|+.++|.|.+.+ .|.  +.+.|++
T Consensus        85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W~~  162 (221)
T 3m8o_H           85 MNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTWSE  162 (221)
T ss_dssp             ECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEESC
T ss_pred             ECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEEEE
Confidence            789999999999999988631 2233336778762    34443 233222  68999999999988 565  3899999


Q ss_pred             CCeEEeeccCCC---cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         73 EGSQVLMFPGNA---YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        73 ~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      ++..+.......   .....+...+.|.|.+...+|.|.|+|.+.+..+.
T Consensus       163 ~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~  212 (221)
T 3m8o_H          163 SGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP  212 (221)
T ss_dssp             CSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSC
T ss_pred             CCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCC
Confidence            886553211100   01111223447999999999999999999997654

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.54  E-value=5.1e-14  Score=92.68  Aligned_cols=93  Identities=15%  Similarity=0.174  Sum_probs=68.7

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeee---CCCeeEEEECCeEEeec--cCCCccee-EE-----eeecEEEEccCCCCC
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGS---PLPSVFWTQEGSQVLMF--PGNAYGHL-HV-----TQEGTLRIQGVQKED  105 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~---~~~~v~W~~~~~~~~~~--~~~~~~~~-~~-----~~~~~l~i~~~~~~d  105 (292)
                      +.+...|....+.+|++++|.|.+.+.   |.|.|.|+|+.. +...  .+...... ..     .....|+|.+++..|
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   86 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKW-MDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNF   86 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSS-CCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTS
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcC-cccCCCCCceEEEccccccccccceEEEEEccCCccc
Confidence            456677888899999999999999874   789999999741 1100  00111000 01     124689999999999


Q ss_pred             CeEEEEEEEeCCcCeeEEEEEEEEe
Q psy15128        106 AGFFVCSALSVAGSTTVRAFLQVTS  130 (292)
Q Consensus       106 ~g~Y~C~~~~~~~~~~~~~~l~v~~  130 (292)
                      +|.|+|.+.|..+.....+.|.|.+
T Consensus        87 aG~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           87 AGNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             CEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             CEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            9999999999988888888888875

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.53  E-value=1.5e-14  Score=91.44  Aligned_cols=76  Identities=22%  Similarity=0.295  Sum_probs=60.6

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcC--eEeccCCCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNG--QFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK  282 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~  282 (292)
                      +....+.+|+.+.|.|.+ .|.|.|.+.|+++|  ..+..  ...+...       .....|.|..+...|+|.|+|.|.
T Consensus         9 ~~~~~v~~G~~~~l~C~~-~g~P~p~i~W~k~~~~~~~~~--~~~~~~~-------~~~~~L~i~~~~~~D~G~Y~C~a~   78 (93)
T 1wit_A            9 SRKIKIKAGFTHNLEVDF-IGAPDPTATWTVGDSGAALAP--ELLVDAK-------SSTTSIFFPSAKRADSGNYKLKVK   78 (93)
T ss_dssp             CCEEEECTTBCCEEEEEE-ECCSSCEEEEECSTTTCBCST--TSEEEEE-------TTEEEEECTTBCGGGCEEEEEEEE
T ss_pred             CCceEEeCCCEEEEEEEE-EEcCCCEEEEEECCCCcccCC--cEEEEec-------CCEEEEEECCCChhcCEEEEEEEE
Confidence            456788999999999998 89999999999999  87742  2222211       112368899999999999999999


Q ss_pred             eccccccc
Q psy15128        283 NIRNQQQH  290 (292)
Q Consensus       283 n~~g~~~~  290 (292)
                      |..|.++.
T Consensus        79 N~~G~~~~   86 (93)
T 1wit_A           79 NELGEDEA   86 (93)
T ss_dssp             ETTEEEEE
T ss_pred             cCCCeEEE
Confidence            99998764

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.53  E-value=5.8e-14  Score=99.27  Aligned_cols=101  Identities=17%  Similarity=0.141  Sum_probs=71.7

Q ss_pred             CcccCCcCCCeeEEEEEEecccccccccEEEEEeCCCc---EEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEE
Q psy15128          1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS---FVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQV   77 (292)
Q Consensus         1 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~---~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~   77 (292)
                      .|.+++.+|+|.|+|.+.+..+  . ..+.|.|..++.   +....        ....|.|.+.+.|.+.+.|++++..+
T Consensus        63 ~I~~v~~~DsG~Y~C~~~n~~~--~-~~~~L~V~~~~~~p~i~~~~--------~~~~L~C~~~~~p~p~i~W~~~~~~l  131 (171)
T 1ccz_A           63 TIYNLTSSDEDEYEMESPNITD--T-MKFFLYVLEMVSKPMIYWEC--------SNATLTCEVLEGTDVELKLYQGKEHL  131 (171)
T ss_dssp             EECSCCGGGCEEEEEECTTCCS--C-EEEEEEEECCCCCCEEEEET--------TTTEEEEECSSCSSCEEEEEETTEEE
T ss_pred             EECCCChhhCceEEEEEeCCCC--c-EEEEEEEECcCCCCEEEEec--------CCcEEEEEeCCCCCcEEEEEECCEEC
Confidence            3789999999999999988766  3 338888876532   22111        11389999998888999999999876


Q ss_pred             eeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEE
Q psy15128         78 LMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF  125 (292)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~  125 (292)
                      ...           ....|.+.  ..+|.|.|+|.|.|..+.......
T Consensus       132 ~~~-----------~~~~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~  166 (171)
T 1ccz_A          132 RSL-----------RQKTMSYQ--WTNLRAPFKCKAVNRVSQESEMEV  166 (171)
T ss_dssp             EEE-----------SSSEEEEE--CSCCSSCEEEEEEETTEEEEEEEC
T ss_pred             cCC-----------cceEEEEe--ccCCCceEEEEEEcccCcccceeE
Confidence            421           11233333  367899999999998876555443

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.53  E-value=2e-13  Score=101.70  Aligned_cols=133  Identities=14%  Similarity=0.206  Sum_probs=77.3

Q ss_pred             CccEEecCCcEEEEEEEeee--CCCee--EEEECC--e--EEe-ec--c---------CCCcceeEEeee-----cEEEE
Q psy15128         44 QDQKVGLNGIASFQCVAEGS--PLPSV--FWTQEG--S--QVL-MF--P---------GNAYGHLHVTQE-----GTLRI   98 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~--~~~~v--~W~~~~--~--~~~-~~--~---------~~~~~~~~~~~~-----~~l~i   98 (292)
                      ....+.+|++++|.|.+.+.  +...+  .|+|..  .  ... ..  .         .....++....+     ..|.|
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (232)
T 3qhz_H            8 GPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTM   87 (232)
T ss_dssp             CCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEE
T ss_pred             CCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEE
Confidence            34668899999999999763  22445  999842  1  111 00  0         111234444322     26999


Q ss_pred             ccCCCCCCeEEEEEEEeCCc--------CeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCC--Cce
Q psy15128         99 QGVQKEDAGFFVCSALSVAG--------STTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPP--PHI  168 (292)
Q Consensus        99 ~~~~~~d~g~Y~C~~~~~~~--------~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~--~~~  168 (292)
                      .+++.+|+|.|.|.+.+..+        .......+.|.. ....+|.+...+....+..|+.++|.|.+.+.++  ..+
T Consensus        88 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~-~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v  166 (232)
T 3qhz_H           88 TNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSS-ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV  166 (232)
T ss_dssp             CSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECS-SCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCEE
T ss_pred             CcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEec-CCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEE
Confidence            99999999999999986521        111223444432 2223444543333344567999999999987533  357


Q ss_pred             EEEeCCeeC
Q psy15128        169 RWYKNGNSL  177 (292)
Q Consensus       169 ~W~~~~~~l  177 (292)
                      .|++++..+
T Consensus       167 ~W~~~g~~~  175 (232)
T 3qhz_H          167 SWNSGALTS  175 (232)
T ss_dssp             EEGGGTBCT
T ss_pred             EEEECCEec
Confidence            899988654

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.53  E-value=9.6e-15  Score=109.80  Aligned_cols=141  Identities=19%  Similarity=0.217  Sum_probs=90.6

Q ss_pred             CCCCceecCCCeEEEEeEeccCCCCceEEEeC--------------CeeCCCC---CccEEEcC----CCcEEEEeeecC
Q psy15128        142 GPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKN--------------GNSLPPE---DTRINVSS----SGSLQIDVLRDD  200 (292)
Q Consensus       142 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~--------------~~~l~~~---~~~~~~~~----~~~l~i~~~~~~  200 (292)
                      .+....+.+|+.++|.| ..+.+.+.+.|+|.              +..+...   ..++....    ..+|.|.+++.+
T Consensus         8 ~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~   86 (245)
T 4ei6_B            8 IPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALE   86 (245)
T ss_dssp             ECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGG
T ss_pred             CCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHh
Confidence            44556788999999999 65677889999982              2111111   03343332    227999999999


Q ss_pred             CCCCCc--------------------------------ceEE--------eCCCceEEEeeCCCC-CCCC-eEEEeEcCe
Q psy15128        201 FRAEPK--------------------------------DTRV--------ASGETALLECGPPKG-QPEP-TLHWKKNGQ  238 (292)
Q Consensus       201 d~g~~~--------------------------------~~~~--------~~g~~~~l~C~~~~~-~p~~-~~~W~~~g~  238 (292)
                      |+|.|.                                ...+        ..|+.++|.|.+ .+ .|++ .+.|+++|+
T Consensus        87 D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~g~~p~~~~v~W~~~g~  165 (245)
T 4ei6_B           87 DSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLA-TGFYPDHVELSWWVNGK  165 (245)
T ss_dssp             GCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEE-EEEBSSCEEEEEEETTE
T ss_pred             HCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEE-eeEeCCCeEEEEEECCE
Confidence            998330                                0111        127899999998 55 5655 899999999


Q ss_pred             EeccCCCceEEec--------CCCccccccccccccccccccc-cceeEEEEeeccccc
Q psy15128        239 FIDLESSKRVSIL--------GDPWFDSRRSRSIFGSVLGALS-DDQWKLIAKNIRNQQ  288 (292)
Q Consensus       239 ~~~~~~~~~~~~~--------~~~~~~~~~~~~l~i~~~~~~~-~g~y~C~a~n~~g~~  288 (292)
                      .+..  .......        .++.+.  ....|.+......| .|.|+|.|+|.....
T Consensus       166 ~l~~--~~~~~~~~~~~~~~~~~g~~~--~~s~L~i~~~~~~d~~g~ytC~v~~~~l~~  220 (245)
T 4ei6_B          166 EVHS--GVCTDPQPLKEQPALNDSRYA--LSSRLRVSATFWQNPRNHFRCQVQFYGLSE  220 (245)
T ss_dssp             EECT--TEEECSSCEESSTTSTTCCEE--EEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             ECCC--CcccccccccccccCCCCCEE--EEEEEEEcHHHhccCCCeEEEEEEECCCCC
Confidence            9852  2222111        123222  12346677777777 899999999986554

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.53  E-value=2.2e-14  Score=92.54  Aligned_cols=77  Identities=10%  Similarity=0.222  Sum_probs=61.7

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      ....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+...  .++.+...+     ....|.|..+..+|+|.|+|.|.|..
T Consensus        16 ~~~~v~~G~~v~l~C~~-~g~p~p~i~W~k~~~~~~~~--~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C~a~N~~   87 (103)
T 3qp3_A           16 RSHRVPCGQNTRFILNV-QSKPTAEVKWYHNGVELQES--SKIHYTNTS-----GVLTLEILDCHTDDSGTYRAVCTNYK   87 (103)
T ss_dssp             CCEEEETTCCEEEEEEE-EEESCCEEEEEETTEECCCC--SSEEEEEET-----TEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             cceEEeCCCeEEEEEEE-EecCCCEEEEEECCEECCCC--CCEEEEECC-----CEEEEEEcCCCcccCEEEEEEEEeCC
Confidence            56788999999999998 89999999999999998633  333332221     12368899999999999999999999


Q ss_pred             ccccc
Q psy15128        286 NQQQH  290 (292)
Q Consensus       286 g~~~~  290 (292)
                      |..+.
T Consensus        88 G~~~~   92 (103)
T 3qp3_A           88 GEASD   92 (103)
T ss_dssp             EEEEE
T ss_pred             CcEEE
Confidence            98754

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.53  E-value=3.3e-14  Score=108.99  Aligned_cols=115  Identities=20%  Similarity=0.356  Sum_probs=77.9

Q ss_pred             cccCCcCCCeeEEEEEEec--------ccccccccEEEEEeC---------------CCcEEeCCCccEEecCCcEEEEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNM--------VGERETKPALLTVHA---------------PPSFVVRPQDQKVGLNGIASFQC   58 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~--------~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~g~~~~l~C   58 (292)
                      |.+++.+|+|.|+|.+.+.        ........+.|.|..               ++.+...+. ..+.+|++++|.|
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C  161 (280)
T 3fku_X           83 LRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTC  161 (280)
T ss_dssp             ECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEE
T ss_pred             ECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEE
Confidence            7899999999999999876        112222336777776               444444444 7889999999999


Q ss_pred             EEee-eC-CCeeEEEECC--eEEee-c--c----CCCcceeEEee---ecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         59 VAEG-SP-LPSVFWTQEG--SQVLM-F--P----GNAYGHLHVTQ---EGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        59 ~~~~-~~-~~~v~W~~~~--~~~~~-~--~----~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      .+.+ .+ .+.+.|+|..  ..... .  .    .....++....   ...|.|.+++.+|+|.|+|.+.+..
T Consensus       162 ~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          162 TGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSS  234 (280)
T ss_dssp             ECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred             EecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence            9987 33 4789999832  21110 0  0    00112222222   2359999999999999999998765

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.53  E-value=2.5e-13  Score=108.47  Aligned_cols=131  Identities=15%  Similarity=0.144  Sum_probs=87.9

Q ss_pred             EecCCcEEEEEEEeee---CC-CeeEEEECCeEEeeccCCC---cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         48 VGLNGIASFQCVAEGS---PL-PSVFWTQEGSQVLMFPGNA---YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        48 ~~~g~~~~l~C~~~~~---~~-~~v~W~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      +.+|+.++|.|.+.+.   |. ..|.|++++..+.......   ...........|.|..++.+|.|.|+|.+.+..+..
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  259 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA  259 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence            7789999999999886   32 3699999986542111100   111122334579999999999999999999876644


Q ss_pred             eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-C-CCceEEEeCCeeCCC
Q psy15128        121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-P-PPHIRWYKNGNSLPP  179 (292)
Q Consensus       121 ~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~l~~  179 (292)
                      .....+.+. .....+|.+.+.+.......|+.++|.|.+.++ | .+.|.|+|+|.++..
T Consensus       260 ~~~~~v~~~-~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~  319 (376)
T 2aty_A          260 PIEKTISKT-KGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAEN  319 (376)
T ss_pred             ceEEEEcCC-CCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCC
Confidence            333333221 112335566555555555568999999999886 3 457999999988743

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.53  E-value=3.7e-14  Score=107.50  Aligned_cols=114  Identities=17%  Similarity=0.242  Sum_probs=79.9

Q ss_pred             cccCCcCCCeeEEEEEEecccc--cccccEEEEEeCC-----------------CcEEeCCCccEEecCCcEEEEEEEee
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGE--RETKPALLTVHAP-----------------PSFVVRPQDQKVGLNGIASFQCVAEG   62 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~--~~~~~~~l~v~~~-----------------p~~~~~~~~~~~~~g~~~~l~C~~~~   62 (292)
                      |.+++++|+|.|+|.+.+..+.  .....+.|.|..+                 |.+...+....+.+|++++|.|.+.+
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~  162 (259)
T 3omz_A           83 LRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYET  162 (259)
T ss_dssp             ESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEEC
T ss_pred             ECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCC
Confidence            7899999999999999987542  2333377888763                 45566677788999999999998877


Q ss_pred             e-CCCeeEEEECCe--EEee--c-c----CCCcceeEEe-----eecEEEEccCCCCCCeEEEEEEEe
Q psy15128         63 S-PLPSVFWTQEGS--QVLM--F-P----GNAYGHLHVT-----QEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        63 ~-~~~~v~W~~~~~--~~~~--~-~----~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      . +.+.+.|+|...  ....  . .    .....++...     ....|.|.+++.+|+|.|+|.+..
T Consensus       163 ~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  230 (259)
T 3omz_A          163 SWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE  230 (259)
T ss_dssp             CCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred             ccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence            4 778999998531  1110  0 0    0011222222     123699999999999999999974

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.52  E-value=2.9e-13  Score=101.68  Aligned_cols=135  Identities=16%  Similarity=0.280  Sum_probs=80.2

Q ss_pred             CCCccEEecCCcEEEEEEEeee--CCCeeEEEECC--eE--Ee-ecc---------CCCcceeEEeee-----cEEEEcc
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGS--PLPSVFWTQEG--SQ--VL-MFP---------GNAYGHLHVTQE-----GTLRIQG  100 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~--~~--~~-~~~---------~~~~~~~~~~~~-----~~l~i~~  100 (292)
                      .+....+.+|++++|.|.+.+.  +...+.|+|..  ..  .. ...         .....++....+     ..|+|.+
T Consensus         5 ~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   84 (248)
T 3u2s_H            5 ESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNS   84 (248)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             cCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECC
Confidence            3446678899999999999752  34589999842  11  11 000         111234444322     3699999


Q ss_pred             CCCCCCeEEEEEEEeCC----------------------cCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEe
Q psy15128        101 VQKEDAGFFVCSALSVA----------------------GSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPC  158 (292)
Q Consensus       101 ~~~~d~g~Y~C~~~~~~----------------------~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C  158 (292)
                      ++.+|+|.|.|.+.+..                      ........+.|.. ....+|.+...+....+..|+.++|.|
T Consensus        85 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~-~~~~~P~v~~~~~~~~~~~g~~~~L~C  163 (248)
T 3u2s_H           85 LRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSS-ASTKGPSVFPLAPSSKSTSGGTAALGC  163 (248)
T ss_dssp             CCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECS-CCCBCCEEEEECCC------CEEEEEE
T ss_pred             CCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcc-cCCCCCEEEEeCCCccccCCCcEEEEE
Confidence            99999999999998631                      0111123444432 222344444333434456799999999


Q ss_pred             EeccC-C-CCceEEEeCCeeC
Q psy15128        159 QAVGS-P-PPHIRWYKNGNSL  177 (292)
Q Consensus       159 ~~~~~-p-~~~~~W~~~~~~l  177 (292)
                      .+.+. | ...+.|++++..+
T Consensus       164 ~~~~~~P~~~~v~W~~~g~~~  184 (248)
T 3u2s_H          164 LVKDYFPEPVTVSWNSGALTS  184 (248)
T ss_dssp             EEEEEBSSCCEEEEGGGTBCT
T ss_pred             EEeeEECCCeEEEEeECCccC
Confidence            99775 4 3469999988654

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.52  E-value=3.2e-14  Score=93.57  Aligned_cols=78  Identities=19%  Similarity=0.204  Sum_probs=62.5

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+..  ..++.+....     ....|.|..+...|+|.|+|.|.|.
T Consensus        14 ~~~~~v~~G~~v~l~C~~-~g~p~p~i~W~k~~~~~~~--~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~   85 (114)
T 2cqv_A           14 PEDQKVRAGESVELFGKV-TGTQPITCTWMKFRKQIQE--SEHMKVENSE-----NGSKLTILAARQEHCGCYTLLVENK   85 (114)
T ss_dssp             CCSEEEETTCCEEEEEEE-ESSSSCEEEEEESSSBCCC--SSSEEEEECS-----SEEEEEETTCCTTTCEEEEEEEECS
T ss_pred             CCCeEEeCCCeEEEEEEE-EcCCCCEEEEEECCEECcC--CCCEEEEEcC-----CEEEEEECCCChhcCEEEEEEEEEC
Confidence            456788999999999998 8999999999999998853  3344433221     1236889999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      .|.++.
T Consensus        86 ~g~~~~   91 (114)
T 2cqv_A           86 LGSRQA   91 (114)
T ss_dssp             SCEEEC
T ss_pred             CCcEEE
Confidence            998754

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.52  E-value=4.2e-15  Score=111.43  Aligned_cols=145  Identities=14%  Similarity=0.152  Sum_probs=91.8

Q ss_pred             CCCCceecCCCeEEEEeEeccCCCCceEEEeCC--------------eeCC--CCCccEEEcC----CCcEEEEeeecCC
Q psy15128        142 GPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNG--------------NSLP--PEDTRINVSS----SGSLQIDVLRDDF  201 (292)
Q Consensus       142 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~--------------~~l~--~~~~~~~~~~----~~~l~i~~~~~~d  201 (292)
                      .+....+.+|+.++|.|.+.+ +.+.+.|+|..              ....  ....++....    ..+|.|.+++.+|
T Consensus         8 ~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D   86 (240)
T 3q5y_A            8 SPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELED   86 (240)
T ss_dssp             ECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGG
T ss_pred             CcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhH
Confidence            345567889999999999865 67789999821              1100  0012333322    2369999999999


Q ss_pred             CCCCc-------------------------------ceE--------EeCCCceEEEeeCCCCCCCC-eEEEeEcCeEec
Q psy15128        202 RAEPK-------------------------------DTR--------VASGETALLECGPPKGQPEP-TLHWKKNGQFID  241 (292)
Q Consensus       202 ~g~~~-------------------------------~~~--------~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~  241 (292)
                      +|.|.                               ...        +..|+.++|.|.+....|.+ .+.|+++|+++.
T Consensus        87 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~  166 (240)
T 3q5y_A           87 SAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVH  166 (240)
T ss_dssp             CEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             CEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEECc
Confidence            99331                               011        11278899999983336666 899999999985


Q ss_pred             cCCCc--eEEecCCCccccccccccccccccccc-cceeEEEEeecccccc
Q psy15128        242 LESSK--RVSILGDPWFDSRRSRSIFGSVLGALS-DDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       242 ~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~C~a~n~~g~~~  289 (292)
                      .....  ......++.+.  ....|.|......| .|.|+|.|.|......
T Consensus       167 ~~~~~~~~~~~~~~g~~~--~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~~  215 (240)
T 3q5y_A          167 SGVSTDPQAYKESNYSYS--LSSRLRVSATFWHNPRNHFRCQVQFHGLSEE  215 (240)
T ss_dssp             TTEEECSSCEEEETTEEE--EEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred             CcEecCCceeeCCCCCEE--EEEEEEECHHHhccCCCEEEEEEEcCCCCCc
Confidence            22111  01122233222  12347777777888 6699999999876543

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.52  E-value=4.2e-14  Score=90.12  Aligned_cols=79  Identities=10%  Similarity=0.124  Sum_probs=62.0

Q ss_pred             CCcceEEeCCCceEEEeeCCCCC-CCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128        204 EPKDTRVASGETALLECGPPKGQ-PEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK  282 (292)
Q Consensus       204 ~~~~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~  282 (292)
                      .+....+.+|+.+.|.|.+ .+. |.+.+.|++++..+..  ..++.+...     .....|.|..+...|+|.|+|.|.
T Consensus         7 ~~~~~~v~~G~~v~l~C~~-~g~~p~~~v~W~~~~~~~~~--~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~   78 (97)
T 2bk8_A            7 QIMHAVGEEGGHVKYVCKI-ENYDQSTQVTWYFGVRQLEN--SEKYEITYE-----DGVAILYVKDITKLDDGTYRCKVV   78 (97)
T ss_dssp             CCCCEEECTTCCEEEEEEE-ESCCTTCEEEEEETTEECCS--SSSEEEEEE-----TTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cCcCEEEcCCCcEEEEEEE-eccCCCCEEEEEECCEECcC--CCCEEEEEc-----CCeEEEEEecCChhhCeEEEEEEE
Confidence            4567889999999999998 776 8899999999998863  333332111     112368899999999999999999


Q ss_pred             eccccccc
Q psy15128        283 NIRNQQQH  290 (292)
Q Consensus       283 n~~g~~~~  290 (292)
                      |..|....
T Consensus        79 n~~g~~~~   86 (97)
T 2bk8_A           79 NDYGEDSS   86 (97)
T ss_dssp             CSSCEEEE
T ss_pred             CCCCeEeE
Confidence            99998764

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1.3e-13  Score=91.28  Aligned_cols=92  Identities=16%  Similarity=0.209  Sum_probs=68.8

Q ss_pred             CCCcEEe---CCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEE
Q psy15128         35 APPSFVV---RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC  111 (292)
Q Consensus        35 ~~p~~~~---~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C  111 (292)
                      .+|.+..   .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.   ..............|.|.++..+|+|.|+|
T Consensus        20 ~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~---~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   96 (118)
T 2e7c_A           20 EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD---TSRVHVRTSDFDTVFFVRQAARSDSGEYEL   96 (118)
T ss_dssp             EEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC---CSSCEEEECSSEEEEEESSCCTTTCEEEEE
T ss_pred             cCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC---CCcEEEEECCCeEEEEECCCChhcCEEEEE
Confidence            3455543   2356788899999999999999999999999998763   111111111223469999999999999999


Q ss_pred             EEEeCCcCeeEEEEEEEE
Q psy15128        112 SALSVAGSTTVRAFLQVT  129 (292)
Q Consensus       112 ~~~~~~~~~~~~~~l~v~  129 (292)
                      .+.|..|.....+.|.|.
T Consensus        97 ~a~N~~G~~~~~~~l~V~  114 (118)
T 2e7c_A           97 SVQIENMKDTATIRIRVV  114 (118)
T ss_dssp             EEECSSCEECCEEEEEEE
T ss_pred             EEEeCCCeEEEEEEEEEE
Confidence            999999877766766665

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.52  E-value=3.6e-14  Score=89.32  Aligned_cols=76  Identities=21%  Similarity=0.205  Sum_probs=58.4

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +.+..+.+|+.+.|.|.+ .+ |++.+.|+|+|++|..  +.++.+..++     ....|.|..+..+|+|.|+|.|.|.
T Consensus        12 ~~~~~v~~G~~v~l~C~v-~~-~~~~v~W~k~g~~i~~--~~~~~i~~~g-----~~~~L~I~~v~~~D~G~Y~C~a~n~   82 (93)
T 1waa_A           12 LYGVEVFVGETAHFEIEL-SE-PDVHGQWKLKGQPLAA--SPDCEIIEDG-----KKHILILHNCQLGMTGEVSFQAANT   82 (93)
T ss_dssp             CCCEEEETTSCEEEEEEE-SS-SSCCCEEEETTEECCC--BTTEEEEEET-----TEEEEEECSCCGGGCEEEEEEETTE
T ss_pred             CcceEEeCCCCEEEEEEE-CC-CCCeEEEEECCEECcC--CCCEEEEEEC-----CEEEEEECCCChhhCEEEEEEECCC
Confidence            457789999999999998 55 4578999999999863  3344433222     1236899999999999999999998


Q ss_pred             ccccc
Q psy15128        285 RNQQQ  289 (292)
Q Consensus       285 ~g~~~  289 (292)
                      .+++.
T Consensus        83 ~~sa~   87 (93)
T 1waa_A           83 KSAAN   87 (93)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            76553

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.52  E-value=2.3e-13  Score=101.15  Aligned_cols=139  Identities=17%  Similarity=0.251  Sum_probs=87.6

Q ss_pred             EeCCCccEEecCCcEEEEEEEeee--CCCeeEEEECC--e--E-Eeecc-CC-------CcceeEEee-----ecEEEEc
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGS--PLPSVFWTQEG--S--Q-VLMFP-GN-------AYGHLHVTQ-----EGTLRIQ   99 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~--~--~-~~~~~-~~-------~~~~~~~~~-----~~~l~i~   99 (292)
                      ...+..+.+.+|++++|.|.+.+.  +...+.|+|..  .  . +.... ..       ...++....     ...|.|.
T Consensus         5 ~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (230)
T 1ypz_F            5 EQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIY   84 (230)
T ss_dssp             ECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEEC
T ss_pred             cccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEEC
Confidence            344566788999999999999764  55689999853  1  1 11111 10       123444332     2379999


Q ss_pred             cCCCCCCeEEEEEEEeC--CcC--eeEEEEEEEEeec------CCCCCeEEeCCCCceecCCCeEEEEeEeccC-CC-Cc
Q psy15128        100 GVQKEDAGFFVCSALSV--AGS--TTVRAFLQVTSVE------DTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PP-PH  167 (292)
Q Consensus       100 ~~~~~d~g~Y~C~~~~~--~~~--~~~~~~l~v~~~~------~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~  167 (292)
                      +++.+|+|.|.|.+.+.  ...  ......|.|....      ..+.+.+. .+....+..|+.++|.|.+.+. |. +.
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~-~p~~~~v~~g~~~~L~C~~~g~~P~~~~  163 (230)
T 1ypz_F           85 SLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIF-LPSVAETNLHKTGTYLCLLEAFFPDVIR  163 (230)
T ss_dssp             SCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEE-CCCHHHHHHHSCEEEEEEEEEESSCCCE
T ss_pred             cCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEE-CCCchhhccCCcceEEEEEeeecCCCeE
Confidence            99999999999999874  111  1122355554211      11222332 2443445678999999999876 65 58


Q ss_pred             eEEEe-CCeeCCC
Q psy15128        168 IRWYK-NGNSLPP  179 (292)
Q Consensus       168 ~~W~~-~~~~l~~  179 (292)
                      +.|++ +|..+..
T Consensus       164 v~W~~~~g~~l~~  176 (230)
T 1ypz_F          164 VYWKEKDGNTILD  176 (230)
T ss_dssp             EEEECTTSSCBCC
T ss_pred             EEEEccCCeEccc
Confidence            99999 7776643

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.52  E-value=7e-14  Score=88.66  Aligned_cols=86  Identities=19%  Similarity=0.340  Sum_probs=66.9

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      +|.+...+....+.+|+.+.|.|.+.+.| +.+.|++++..+..     ..+... ..+.|.|.+++.+|+|.|+|.+.|
T Consensus         9 pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~-----~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~n   81 (95)
T 2ckn_A            9 PWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVE-----SNRTRI-TGEEVEVRDSIPADSGLYACVTSS   81 (95)
T ss_dssp             SCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCC-----CSSEEE-CSSEEEESSCCGGGSEEEEEEEEE
T ss_pred             CCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCC-----CCCEEE-eCCEEEECCCChHHCEEEEEEecc
Confidence            45555566777899999999999999887 79999998876531     112222 267899999999999999999999


Q ss_pred             CCcCeeEEEEEEE
Q psy15128        116 VAGSTTVRAFLQV  128 (292)
Q Consensus       116 ~~~~~~~~~~l~v  128 (292)
                      ..|.......|.|
T Consensus        82 ~~g~~~~~~~l~V   94 (95)
T 2ckn_A           82 PSGSDTTYFSVNV   94 (95)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEE
Confidence            8887666665554

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.52  E-value=4e-14  Score=91.67  Aligned_cols=89  Identities=24%  Similarity=0.429  Sum_probs=71.3

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEe---eecEEEEccCCCCCCeEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVC  111 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C  111 (292)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.  .   ..+....   ....|.|.+++.+|+|.|+|
T Consensus        13 ~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~--~---~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   87 (106)
T 1nct_A           13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLS--T---SARHQVTTTKYKSTFEISSVQASDEGNYSV   87 (106)
T ss_dssp             CCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCT--T---CSSEEEEECSSEEEEEECCCCSSCCSEEEE
T ss_pred             CCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECC--C---CCCEEEEECCCEEEEEECcCCchhCEEEEE
Confidence            35677778888899999999999999999999999999987652  1   1122222   24689999999999999999


Q ss_pred             EEEeCCcCeeEEEEEEE
Q psy15128        112 SALSVAGSTTVRAFLQV  128 (292)
Q Consensus       112 ~~~~~~~~~~~~~~l~v  128 (292)
                      .+.|..|.....+.|.|
T Consensus        88 ~a~N~~G~~~~~~~l~V  104 (106)
T 1nct_A           88 VVENSEGKQEAEFTLTI  104 (106)
T ss_dssp             CCBCSSCBCCEEEEEEE
T ss_pred             EEEeCCCeEEEEEEEEE
Confidence            99999888777776665

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.51  E-value=1e-13  Score=105.00  Aligned_cols=119  Identities=16%  Similarity=0.176  Sum_probs=78.5

Q ss_pred             cccCCcCCCeeEEEEEEecccc--cccccEEEEEeC----CCcEEeCCCccEEecCCcEEEEEEEeee-CCC-eeEEEEC
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGE--RETKPALLTVHA----PPSFVVRPQDQKVGLNGIASFQCVAEGS-PLP-SVFWTQE   73 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~   73 (292)
                      |.+++.+|+|.|+|.+.+..+.  .....+.|.|..    +|.+...+....+.+|+.++|.|.+.+. |.+ .+.|+++
T Consensus        89 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~  168 (261)
T 2xqy_G           89 LSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSG  168 (261)
T ss_dssp             ECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             EcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecC
Confidence            7899999999999999985321  122336888874    3554433323346679999999999885 666 9999998


Q ss_pred             CeEEeeccCC-CcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCee
Q psy15128         74 GSQVLMFPGN-AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT  121 (292)
Q Consensus        74 ~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~  121 (292)
                      +..+...... ..........+.|.|.++..+| |.|+|.+.|......
T Consensus       169 g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~  216 (261)
T 2xqy_G          169 SLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTK  216 (261)
T ss_dssp             TCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred             CCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCcc
Confidence            8643111000 0000122334679999988888 999999998765433

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.51  E-value=1e-13  Score=102.04  Aligned_cols=120  Identities=17%  Similarity=0.189  Sum_probs=76.3

Q ss_pred             cccCCcCCCeeEEEEEEecccc--cccccEEEEEeC----CCcEEeCCCccEEecCCcEEEEEEEeee-CCC-eeEEEEC
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGE--RETKPALLTVHA----PPSFVVRPQDQKVGLNGIASFQCVAEGS-PLP-SVFWTQE   73 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~   73 (292)
                      |.+++.+|+|.|+|.+.+..+.  .....+.|.|..    +|.+...+....+.+|+.++|.|.+.+. |.+ .+.|+++
T Consensus        82 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  161 (215)
T 1c5d_H           82 MNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSG  161 (215)
T ss_dssp             ESSCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             ECCCCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccC
Confidence            7899999999999999886422  222337888873    3555443323345689999999999986 777 9999998


Q ss_pred             CeEEeeccCCCc-ceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEE
Q psy15128         74 GSQVLMFPGNAY-GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  124 (292)
Q Consensus        74 ~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~  124 (292)
                      +..+........ ....+.....|.  ....+| |.|+|.+.|..+......
T Consensus       162 g~~~~~~~~~~~~~~g~~~~~s~L~--~~~~~~-g~ytC~v~n~~~~~~~~~  210 (215)
T 1c5d_H          162 ALSSDVHTFPAVLQSGLYTLTSSVT--SSTWPS-QTVTCNVAHPASSTKVDK  210 (215)
T ss_dssp             TTCCSCCBCCCEEETTEEEEEEEEE--ESSTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             CccCceEecCcccCCCCEEEEEEEe--cccCCC-CeEEEEEEeCCCCccEEE
Confidence            764321100000 000111122344  444456 999999999887655443

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.51  E-value=3.3e-14  Score=91.03  Aligned_cols=78  Identities=17%  Similarity=0.219  Sum_probs=61.2

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      ....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+.... .++....++     ....|.|..+...|+|.|+|.|.|..
T Consensus        13 ~~~~v~~G~~v~l~C~~-~g~p~p~v~W~k~~~~~~~~~-~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C~a~N~~   85 (99)
T 1u2h_A           13 MDQSVREGQDVIMSIRV-QGEPKPVVSWLRNRQPVRPDQ-RRFAEEAEG-----GLCRLRILAAERGDAGFYTCKAVNEY   85 (99)
T ss_dssp             CCEEEETTCCEEEEEEE-EEESCCEEEEEETTEECCCBT-TEEEEECGG-----GEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CceEecCCCEEEEEEEE-EEcCCCEEEEEECCEECCCCC-CEEEEECCC-----CEEEEEEccCCcCCCEEEEEEEEECC
Confidence            45688999999999998 889999999999999885322 233332221     11258899999999999999999999


Q ss_pred             ccccc
Q psy15128        286 NQQQH  290 (292)
Q Consensus       286 g~~~~  290 (292)
                      |..+.
T Consensus        86 g~~~~   90 (99)
T 1u2h_A           86 GARQC   90 (99)
T ss_dssp             EEEEE
T ss_pred             CceeE
Confidence            98754

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.51  E-value=2.6e-13  Score=102.39  Aligned_cols=140  Identities=20%  Similarity=0.355  Sum_probs=90.1

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--e--EEeec-cC-------CCcceeEEee----ecEEEEccCC
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--S--QVLMF-PG-------NAYGHLHVTQ----EGTLRIQGVQ  102 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~--~~~~~-~~-------~~~~~~~~~~----~~~l~i~~~~  102 (292)
                      +...+..+.+.+|++++|.|.+. .+.+.+.|+|..  .  ..... ..       ....+.....    ...|.|.+++
T Consensus         6 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~   84 (252)
T 1oga_E            6 ITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ   84 (252)
T ss_dssp             EECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC
T ss_pred             ceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCC
Confidence            44456677899999999999985 456799999853  1  11111 10       0123333322    3479999999


Q ss_pred             CCCCeEEEEEEEeCC---cCeeEEEEEEEEee-cCCCCCeEEe-CCCCceecCCCeEEEEeEeccC-CC-CceEEEeCCe
Q psy15128        103 KEDAGFFVCSALSVA---GSTTVRAFLQVTSV-EDTPPPIVQV-GPSNQTLPLHSVAFLPCQAVGS-PP-PHIRWYKNGN  175 (292)
Q Consensus       103 ~~d~g~Y~C~~~~~~---~~~~~~~~l~v~~~-~~~~~~~~~~-~~~~~~~~~g~~v~l~C~~~~~-p~-~~~~W~~~~~  175 (292)
                      .+|+|.|.|.+.+..   ........+.|... ....+|.+.+ .+....+.+|+.++|.|.+.+. |. +.+.|+++|.
T Consensus        85 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~  164 (252)
T 1oga_E           85 KNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGK  164 (252)
T ss_dssp             SCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTE
T ss_pred             hhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECCE
Confidence            999999999998752   11112234555431 1112444443 3444445579999999999875 65 4899999998


Q ss_pred             eCCC
Q psy15128        176 SLPP  179 (292)
Q Consensus       176 ~l~~  179 (292)
                      .+..
T Consensus       165 ~l~~  168 (252)
T 1oga_E          165 EVHS  168 (252)
T ss_dssp             EECS
T ss_pred             ECCC
Confidence            8765

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=4.5e-14  Score=90.55  Aligned_cols=75  Identities=21%  Similarity=0.345  Sum_probs=60.6

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      ....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+.. ...++....+        ..|.|..+...|+|.|+|.|.|..
T Consensus        16 ~~~~v~~G~~~~l~C~~-~g~p~p~v~W~~~~~~~~~-~~~~~~~~~~--------~~L~i~~v~~~d~G~Y~C~a~n~~   85 (100)
T 2edj_A           16 ANQTLAVDGTALLKCKA-TGDPLPVISWLKEGFTFPG-RDPRATIQEQ--------GTLQIKNLRISDTGTYTCVATSSS   85 (100)
T ss_dssp             CCEEEESSSEEEECCEE-ECSSCCEEEEEESSSEESS-SCSSCEECTT--------CCEEEESCCTTTCCEEEEEEECSS
T ss_pred             CCEEEcCCCcEEEEEEE-EEcCCCEEEEEECCEECCC-CCCCEEEcCC--------CEEEEccCCcccCEEEEEEEEcCC
Confidence            45678899999999998 7999999999999988852 2233333222        258899999999999999999999


Q ss_pred             ccccc
Q psy15128        286 NQQQH  290 (292)
Q Consensus       286 g~~~~  290 (292)
                      |..+.
T Consensus        86 g~~~~   90 (100)
T 2edj_A           86 GETSW   90 (100)
T ss_dssp             CCCBC
T ss_pred             CCEEE
Confidence            98754

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.51  E-value=3e-13  Score=98.76  Aligned_cols=149  Identities=19%  Similarity=0.228  Sum_probs=89.6

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--e--EEeeccC---CCcceeEEee------ecEEEEccCCCCC
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--S--QVLMFPG---NAYGHLHVTQ------EGTLRIQGVQKED  105 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~--~~~~~~~---~~~~~~~~~~------~~~l~i~~~~~~d  105 (292)
                      +...+..+.+.+|++++|.|.+.+.+ +.+.|+|..  .  .......   ....++....      ...|+|.+++.+|
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D   82 (207)
T 1ypz_E            4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLED   82 (207)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGG
T ss_pred             cEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHH
Confidence            34456677899999999999997644 479999853  1  1111000   0112333332      2479999999999


Q ss_pred             CeEEEEEEEeCCc---------C--eeEEEEEEEEeec-CCCCCeEEeCCCCceecCCCeEEEEeEeccC-CC-CceEEE
Q psy15128        106 AGFFVCSALSVAG---------S--TTVRAFLQVTSVE-DTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PP-PHIRWY  171 (292)
Q Consensus       106 ~g~Y~C~~~~~~~---------~--~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~~~W~  171 (292)
                      +|.|.|.+.+..+         .  ......|.|.... ...+|.+..       ..+ .+.|.|.+.+. |. +.+.|+
T Consensus        83 ~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~v~~-------~~~-~~~l~C~~~g~~P~~~~v~W~  154 (207)
T 1ypz_E           83 SGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFI-------MKN-GTNVACLVKDFYPKEVTISLR  154 (207)
T ss_dssp             CEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCEEEE-------EEE-TTEEEEEEEEESSSCCEEEEE
T ss_pred             CEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCCeEEE-------eCC-CCeEEEEEeeEeCCCeEEEEe
Confidence            9999999987532         1  1122455554311 111222221       111 26999999775 44 689999


Q ss_pred             eCCeeCCCCCccEEEcCCCcEEEEee
Q psy15128        172 KNGNSLPPEDTRINVSSSGSLQIDVL  197 (292)
Q Consensus       172 ~~~~~l~~~~~~~~~~~~~~l~i~~~  197 (292)
                      ++ ..+...........++.+.+...
T Consensus       155 ~~-~~l~~~~~~~~~~~~g~y~~~~~  179 (207)
T 1ypz_E          155 SS-KKIVEFDPAIVISPSGKYSAVKL  179 (207)
T ss_dssp             CS-SEEEECCCEEEECTTSSEEEEEC
T ss_pred             cC-CcccCCccceEEcCCCcEEEEEe
Confidence            99 66654333333456677777643

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.50  E-value=2.8e-15  Score=99.92  Aligned_cols=100  Identities=22%  Similarity=0.334  Sum_probs=76.9

Q ss_pred             EEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCe-eEEEECCeEEeeccCCCcceeEEee----ecEEEEccCCC
Q psy15128         29 ALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPS-VFWTQEGSQVLMFPGNAYGHLHVTQ----EGTLRIQGVQK  103 (292)
Q Consensus        29 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~  103 (292)
                      +.|.|..+|.+.. +....+.+|+.+.|.|.+.+.|.|. +.|++++..+.......+.......    ...|.|.+++.
T Consensus         7 ~~l~V~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   85 (122)
T 2cry_A            7 GTLTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVR   85 (122)
T ss_dssp             CCCCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCH
T ss_pred             EEEEEecCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCCh
Confidence            7788889998888 7788899999999999999999887 9999998876421111111110111    34899999999


Q ss_pred             CCC-eEEEEEEEeCCcCeeEEEEEEEE
Q psy15128        104 EDA-GFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus       104 ~d~-g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      +|. |.|+|.|.|..|.....+.|.|.
T Consensus        86 ~D~~G~Y~C~a~N~~G~~~~~~~l~V~  112 (122)
T 2cry_A           86 ADFQTIYNCTAWNSFGSDTEIIRLKEQ  112 (122)
T ss_dssp             HHHHSCEEEEEECSSCEEEEEECCCCS
T ss_pred             hhCCceEEEEEECCCCeEEEEEEEEEC
Confidence            999 99999999999987766666554

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=5.1e-14  Score=91.99  Aligned_cols=93  Identities=27%  Similarity=0.443  Sum_probs=72.4

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEee--ecEEEEccCCCCCCeEEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ--EGTLRIQGVQKEDAGFFVCS  112 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~Y~C~  112 (292)
                      .+|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+....   ........  ...|.|.+++.+|+|.|+|.
T Consensus         8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~---~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~   84 (110)
T 2dm3_A            8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDS---AHKMLVRENGVHSLIIEPVTSRDAGIYTCI   84 (110)
T ss_dssp             CCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCS---SEEEEECTTSCEEEEESSCCGGGCSBBCEE
T ss_pred             CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCC---ceEEEEecCCeEEEEEeeCCcccCEEEEEE
Confidence            36777778888899999999999999999999999999887653111   11111111  23899999999999999999


Q ss_pred             EEeCCcCeeEEEEEEEEe
Q psy15128        113 ALSVAGSTTVRAFLQVTS  130 (292)
Q Consensus       113 ~~~~~~~~~~~~~l~v~~  130 (292)
                      +.|..+.....+.|.|..
T Consensus        85 a~n~~g~~~~~~~l~V~~  102 (110)
T 2dm3_A           85 ATNRAGQNSFSLELVVAA  102 (110)
T ss_dssp             EECSSCEEEECCEEEEEC
T ss_pred             EECCCCEEEEEEEEEEeC
Confidence            999988877777777764

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.50  E-value=4.9e-13  Score=85.10  Aligned_cols=88  Identities=18%  Similarity=0.179  Sum_probs=66.3

Q ss_pred             EeCCCccEEecCCcEEEEEEEeee-CCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG  118 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~  118 (292)
                      ...+....+.+|+.+.|.|.+.+. |.+.+.|++++..+..  ..............|.|.+++.+|+|.|+|.+.|..|
T Consensus         5 ~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   82 (97)
T 2bk8_A            5 SGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLEN--SEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYG   82 (97)
T ss_dssp             ECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCS--SSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             eccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcC--CCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCC
Confidence            344567789999999999999997 8899999999986531  1111111111223899999999999999999999988


Q ss_pred             CeeEEEEEEEE
Q psy15128        119 STTVRAFLQVT  129 (292)
Q Consensus       119 ~~~~~~~l~v~  129 (292)
                      .......|.|.
T Consensus        83 ~~~~~~~l~V~   93 (97)
T 2bk8_A           83 EDSSYAELFVK   93 (97)
T ss_dssp             EEEEEEEEEET
T ss_pred             eEeEEEEEEEE
Confidence            87777766664

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.50  E-value=5.1e-14  Score=107.29  Aligned_cols=118  Identities=20%  Similarity=0.293  Sum_probs=79.4

Q ss_pred             cccCCcCCCeeEEEEEEec-ccccccccEEEEEeC------CCcEEe-CCCccEEecCCcEEEEEEEeeeCCC--eeEEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNM-VGERETKPALLTVHA------PPSFVV-RPQDQKVGLNGIASFQCVAEGSPLP--SVFWT   71 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~-~~~~~~~~~~l~v~~------~p~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~--~v~W~   71 (292)
                      |.+++.+|+|.|+|.+.+. ........+.|.|..      +|.+.. .+....+.+|+.++|.|.+.+.+++  .+.|+
T Consensus       104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~  183 (268)
T 3pl6_D          104 IQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  183 (268)
T ss_dssp             ECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             ECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEE
Confidence            7899999999999999874 222222336788875      455443 3444455669999999999986554  89999


Q ss_pred             ECCeEEeeccCC---------CcceeEEeeecEEEEccCCCCC-CeEEEEEEEeCCcC
Q psy15128         72 QEGSQVLMFPGN---------AYGHLHVTQEGTLRIQGVQKED-AGFFVCSALSVAGS  119 (292)
Q Consensus        72 ~~~~~~~~~~~~---------~~~~~~~~~~~~l~i~~~~~~d-~g~Y~C~~~~~~~~  119 (292)
                      +++..+......         ......+.....|.|.....+| .|.|+|.+.+....
T Consensus       184 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~  241 (268)
T 3pl6_D          184 VNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  241 (268)
T ss_dssp             ESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             ECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence            998776311000         0011122334568888887777 99999999987544

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=1.1e-13  Score=90.32  Aligned_cols=80  Identities=21%  Similarity=0.368  Sum_probs=61.8

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +....+.+|+.+.|.|.+ .+.|.+.+.|+++|+.+.... .++.+..+.    .....|.|..+...|+|.|+|.|.|.
T Consensus        15 ~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~k~g~~~~~~~-~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~   88 (110)
T 2dm2_A           15 LKHYKIFEGMPVTFTCRV-AGNPKPKIYWFKDGKQISPKS-DHYTIQRDL----DGTCSLHTTASTLDDDGNYTIMAANP   88 (110)
T ss_dssp             CCCEEEETTCCEEEEEEB-CCSSCCEEEEECSSCBCCTTC-SSEEEEECT----TCEEEEEESSCCTTTCSCCEEEEECT
T ss_pred             CcCeEEeCCCeEEEEEEE-EecCCCEEEEEECCEECCCCC-CeEEEEECC----CcEEEEEECCCChhhCEEEEEEEEEC
Confidence            356788999999999998 899999999999999885322 233332211    01125889999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      .|..+.
T Consensus        89 ~g~~~~   94 (110)
T 2dm2_A           89 QGRISC   94 (110)
T ss_dssp             TCCEEE
T ss_pred             CCeEEE
Confidence            998764

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.50  E-value=1.1e-13  Score=103.86  Aligned_cols=144  Identities=15%  Similarity=0.173  Sum_probs=89.7

Q ss_pred             eCCCCceecCCCeEEEEeEeccC--CCCceEEEeCC--eeCC---------------C-CCccEEEc-----CCCcEEEE
Q psy15128        141 VGPSNQTLPLHSVAFLPCQAVGS--PPPHIRWYKNG--NSLP---------------P-EDTRINVS-----SSGSLQID  195 (292)
Q Consensus       141 ~~~~~~~~~~g~~v~l~C~~~~~--p~~~~~W~~~~--~~l~---------------~-~~~~~~~~-----~~~~l~i~  195 (292)
                      ..+....+.+|+.++|.|.+.+.  +.+.+.|+|+.  ..+.               . ...++...     ...+|.|.
T Consensus         6 q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   85 (242)
T 1hxm_B            6 QPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIH   85 (242)
T ss_dssp             CCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEEC
T ss_pred             cCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEEC
Confidence            34556678899999999999775  56789999843  2110               0 12344332     12368888


Q ss_pred             eeecCCCCCCc---------------------ceEE-----------------------eCCCceEEEeeCCCCCCC-Ce
Q psy15128        196 VLRDDFRAEPK---------------------DTRV-----------------------ASGETALLECGPPKGQPE-PT  230 (292)
Q Consensus       196 ~~~~~d~g~~~---------------------~~~~-----------------------~~g~~~~l~C~~~~~~p~-~~  230 (292)
                      +++.+|+|.|.                     ...+                       ..|+.++|.|.+....|. +.
T Consensus        86 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~~~  165 (242)
T 1hxm_B           86 NVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIK  165 (242)
T ss_dssp             SCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEE
T ss_pred             CCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECCCeE
Confidence            88888888220                     0111                       138889999998433465 79


Q ss_pred             EEEeEcCe-EeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccc
Q psy15128        231 LHWKKNGQ-FIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       231 ~~W~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  289 (292)
                      +.|+++|. .+......... ..++.+..  ...|.|..... + |.|+|.|.|..|...
T Consensus       166 v~W~~~~~~~l~~~~~~~~~-~~~~~~~~--~s~L~i~~~~~-~-g~y~C~v~n~~~~~~  220 (242)
T 1hxm_B          166 IHWEEKKSNTILGSQEGNTM-KTNDTYMK--FSWLTVPEKSL-D-KEHRCIVRHENNKNG  220 (242)
T ss_dssp             EEEEESSSCCCCCCEECCCE-ECSSSEEE--EEEEEECTGGG-G-SCEEEEEEETTSGGG
T ss_pred             EEEEcCCCEeecCcccccee-cCCCcEEE--EEEEEEccccC-C-CEEEEEEEeCCCCCC
Confidence            99999987 56322111111 23333322  23466665554 4 999999999998764

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=8.4e-14  Score=92.16  Aligned_cols=76  Identities=22%  Similarity=0.388  Sum_probs=61.5

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+.. ...++....++        .|.|..+..+|+|.|+|.|.|.
T Consensus        15 p~~~~v~~G~~v~l~C~~-~g~p~p~i~W~k~g~~~~~-~~~~~~~~~~~--------~L~i~~v~~~D~G~Y~C~a~n~   84 (118)
T 2eo9_A           15 PVNQTVAVDGTFVLSCVA-TGSPVPTILWRKDGVLVST-QDSRIKQLENG--------VLQIRYAKLGDTGRYTCIASTP   84 (118)
T ss_dssp             CCCEEEETTCEEEEECBC-CCSSCCEEEEEESSSBCCT-TSTTEEEEETT--------EEEEESCCGGGCCCEEEEEECS
T ss_pred             CCCEEEcCCCeEEEEEEE-EecCCCEEEEEECCEECcC-CCCeEEEccCC--------EEEEccCCcCCCEEEEEEEEcC
Confidence            456788999999999998 8999999999999988853 23333333222        6889999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      .|....
T Consensus        85 ~g~~~~   90 (118)
T 2eo9_A           85 SGEATW   90 (118)
T ss_dssp             SCEEEE
T ss_pred             CCcEEE
Confidence            998753

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.49  E-value=6.2e-14  Score=89.72  Aligned_cols=77  Identities=21%  Similarity=0.263  Sum_probs=61.4

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      ....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+...  .++.+..++     ....|.|..+..+|+|.|+|.|.|..
T Consensus        14 ~~~~v~~G~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~--~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a~n~~   85 (99)
T 3puc_A           14 QDTTVSSDSVAKFAVKA-TGEPRPTAIWTKDGKAITQG--GKYKLSEDK-----GGFFLEIHKTDTSDSGLYTCTVKNSA   85 (99)
T ss_dssp             CCEEEESSSCEEEEEEE-EEESCCEEEEEETTEECCSS--SSEEEEEET-----TEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             ccEEEeCCCcEEEEEEE-EecCCCEEEEEECCEECcCC--CCEEEEEeC-----CEEEEEECCCCcccCEEEEEEEEeCC
Confidence            46788999999999998 88999999999999988633  333333221     12258899999999999999999999


Q ss_pred             ccccc
Q psy15128        286 NQQQH  290 (292)
Q Consensus       286 g~~~~  290 (292)
                      |..+.
T Consensus        86 g~~~~   90 (99)
T 3puc_A           86 GSVSS   90 (99)
T ss_dssp             EEEEE
T ss_pred             CcEeE
Confidence            98754

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.49  E-value=4.2e-14  Score=106.72  Aligned_cols=121  Identities=16%  Similarity=0.247  Sum_probs=66.0

Q ss_pred             cccCCcCCCeeEEEEEEecccc------------cccccEEEEEeC----CCcEEeCCCccEEecCCcEEEEEEEeee-C
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVGE------------RETKPALLTVHA----PPSFVVRPQDQKVGLNGIASFQCVAEGS-P   64 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~~------------~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~   64 (292)
                      |.+++.+|+|.|+|.+.+..+.            .....+.|.|..    +|.+........+.+|+.++|.|.+.+. |
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P  162 (257)
T 3bn9_D           83 MSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  162 (257)
T ss_dssp             EESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBS
T ss_pred             ECCCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEEC
Confidence            7899999999999999986541            122336888875    3544433323345679999999999886 7


Q ss_pred             CC-eeEEEECCeEEeeccCCC--cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEE
Q psy15128         65 LP-SVFWTQEGSQVLMFPGNA--YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  123 (292)
Q Consensus        65 ~~-~v~W~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~  123 (292)
                      .+ .+.|++++..+.......  .....+...+.|.|.++..+| |.|+|.+.|........
T Consensus       163 ~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~~~  223 (257)
T 3bn9_D          163 EPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD  223 (257)
T ss_dssp             SCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGTEEEE
T ss_pred             CCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCcCEE
Confidence            76 899999886531110000  000112234568888888778 99999999976544433

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.49  E-value=1.9e-13  Score=87.57  Aligned_cols=84  Identities=24%  Similarity=0.372  Sum_probs=63.7

Q ss_pred             CccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEE
Q psy15128         44 QDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  123 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~  123 (292)
                      ....+.+|+.+.|.|.+.+.|.+.+.|++++..+....... ..........|.|.+++.+|+|.|+|.+.|..|.....
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~   94 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG-GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT   94 (100)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTT-CCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             cEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccc-cEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEE
Confidence            34567889999999999999999999999998764221111 11122234589999999999999999999998876666


Q ss_pred             EEEEE
Q psy15128        124 AFLQV  128 (292)
Q Consensus       124 ~~l~v  128 (292)
                      +.|.|
T Consensus        95 ~~l~V   99 (100)
T 3caf_A           95 YHLDV   99 (100)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            65554

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=2.2e-13  Score=86.98  Aligned_cols=86  Identities=27%  Similarity=0.271  Sum_probs=66.2

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEee---ecEEEEccCCCCCCeEEEEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ---EGTLRIQGVQKEDAGFFVCS  112 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y~C~  112 (292)
                      +|.+...+....+.+|+.+.|.|.+  .|.+.+.|+|++..+..     ..+.....   ...|.|.++..+|+|.|+|.
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~-----~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~   79 (100)
T 2yuz_A            7 GLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQE-----SDRLKVVQKGRIHKLVIANALTEDEGDYVFA   79 (100)
T ss_dssp             CCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCC-----CSSEEEEECSSEEEEEESSCCGGGCSEEEEE
T ss_pred             CCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCC-----CCcEEEEEeCCEEEEEECCCChhhCEEEEEE
Confidence            5566677788899999999999999  78889999999987631     12222222   24799999999999999999


Q ss_pred             EEeCCcCeeEEEEEEEEe
Q psy15128        113 ALSVAGSTTVRAFLQVTS  130 (292)
Q Consensus       113 ~~~~~~~~~~~~~l~v~~  130 (292)
                      +.|.  .....+.|.|..
T Consensus        80 a~N~--~~~~~a~L~V~~   95 (100)
T 2yuz_A           80 PDAY--NVTLPAKVHVIS   95 (100)
T ss_dssp             ESSS--CCCEEEEEEEEC
T ss_pred             EcCC--CeeEEEEEEEeC
Confidence            9987  445566676653

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.49  E-value=4.6e-14  Score=89.51  Aligned_cols=73  Identities=14%  Similarity=0.237  Sum_probs=59.3

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +....+.+|+.+.|.|.+ .+.| +.+.|+++|..+.  ...++.+..         ..|.|..+...|+|.|+|.|.|.
T Consensus        16 ~~~~~v~~G~~v~l~C~~-~g~p-p~i~W~k~g~~~~--~~~~~~~~~---------~~L~i~~~~~~D~G~Y~C~a~n~   82 (95)
T 2ckn_A           16 VESLLVHPGDLLQLRCRL-RDDV-QSINWLRDGVQLV--ESNRTRITG---------EEVEVRDSIPADSGLYACVTSSP   82 (95)
T ss_dssp             BCCEEECTTSCEEEECCE-ESSC-CEEEEEBTTBCCC--CCSSEEECS---------SEEEESSCCGGGSEEEEEEEEET
T ss_pred             cceEEEcCCCeEEEEEEC-CCCC-CceEEEECCEecC--CCCCEEEeC---------CEEEECCCChHHCEEEEEEeccC
Confidence            356788999999999998 7777 7999999999885  333444332         26889999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      .|..+.
T Consensus        83 ~g~~~~   88 (95)
T 2ckn_A           83 SGSDTT   88 (95)
T ss_dssp             TEEEEE
T ss_pred             CCcEEE
Confidence            998754

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=1.5e-13  Score=89.38  Aligned_cols=92  Identities=14%  Similarity=0.155  Sum_probs=68.6

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeee---CCCeeEEEECCeEEeeccCCCcceeEE---------eeecEEEEccCCCC
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGS---PLPSVFWTQEGSQVLMFPGNAYGHLHV---------TQEGTLRIQGVQKE  104 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~  104 (292)
                      +.+...|..+.+.+|++++|.|.+.+.   |.|.|.|+|+... ...... ..+..+         .....|+|.+++..
T Consensus        13 ~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   90 (118)
T 2edn_A           13 GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWL-ELGSKS-GARFSFKESHNSASNVYTVELHIGKVVLG   90 (118)
T ss_dssp             SSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTC-CCCCST-TSSCEEEEEECSSSCEEEEEEEESSCCTT
T ss_pred             ceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEe-ccCCCC-ccEEEeccccccccccceEEEEEeeCChh
Confidence            456677888899999999999999874   7889999997421 111100 011111         12468999999999


Q ss_pred             CCeEEEEEEEeCCcCeeEEEEEEEEe
Q psy15128        105 DAGFFVCSALSVAGSTTVRAFLQVTS  130 (292)
Q Consensus       105 d~g~Y~C~~~~~~~~~~~~~~l~v~~  130 (292)
                      |+|.|+|.+.|..+..+..+.|.|..
T Consensus        91 D~G~Y~Cevsn~~g~~s~~~~L~V~~  116 (118)
T 2edn_A           91 DRGYYRLEVKAKDTCDSCGFNIDVEA  116 (118)
T ss_dssp             TCSCEEEEEECSSCEEEEEECCEEEC
T ss_pred             hCEEEEEEEEEcCCcEEEEEEEEEEc
Confidence            99999999999999888888888763

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.49  E-value=1.2e-13  Score=102.89  Aligned_cols=125  Identities=15%  Similarity=0.184  Sum_probs=77.3

Q ss_pred             cccCCcCCCeeEEEEEEeccc-------ccccccEEEEEe----CCCcEEeCCCccEEecCCcEEEEEEEeeeCC--Cee
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVG-------ERETKPALLTVH----APPSFVVRPQDQKVGLNGIASFQCVAEGSPL--PSV   68 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~-------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~v   68 (292)
                      |.+++.+|+|.|.|.+.+..+       ......+.|.|.    .+|.+...+....+..|+.++|.|.+.+.++  ..+
T Consensus        87 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v  166 (232)
T 3qhz_H           87 MTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV  166 (232)
T ss_dssp             ECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCEE
T ss_pred             ECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEE
Confidence            789999999999999986521       112233677776    3455543333445667999999999988543  357


Q ss_pred             EEEECCeEEeeccCC--CcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128         69 FWTQEGSQVLMFPGN--AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  127 (292)
Q Consensus        69 ~W~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~  127 (292)
                      .|++++..+......  ......+...+.|.|.+....| |.|+|.+.|..+.......+.
T Consensus       167 ~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~  226 (232)
T 3qhz_H          167 SWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVE  226 (232)
T ss_dssp             EEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECC
T ss_pred             EEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeC
Confidence            899988532111000  0011122334578999998888 999999999877666555443

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.48  E-value=1.2e-13  Score=90.94  Aligned_cols=81  Identities=21%  Similarity=0.423  Sum_probs=63.5

Q ss_pred             CCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128        204 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN  283 (292)
Q Consensus       204 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n  283 (292)
                      .+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.. ...++.+..++.    ....|.|..+...|+|.|+|.|.|
T Consensus        21 ~p~~~~v~~G~~v~L~C~~-~g~p~p~v~W~k~~~~~~~-~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N   94 (116)
T 2kkq_A           21 KPQSKKVLEGDSVKLECQI-SAIPPPKLFWKRNNEMVQF-NTDRISLYQDNT----GRVTLLIKDVNKKDAGWYTVSAVN   94 (116)
T ss_dssp             CCCCEEEETTEEEEEEEEB-CCBSCCEEEEEETTEECCC-CBTTEEEEECTT----CEEEEEEEEECGGGCEEEEEEEEE
T ss_pred             CCCcEEEeCCCcEEEEEEE-eccCCCEEEEEECCEECcC-CCCeEEEEeCCC----CeEEEEECCCCcccCEEEEEEEEc
Confidence            4567889999999999998 8999999999999998853 233443332221    122588999999999999999999


Q ss_pred             ccccccc
Q psy15128        284 IRNQQQH  290 (292)
Q Consensus       284 ~~g~~~~  290 (292)
                      ..|..+.
T Consensus        95 ~~G~~~~  101 (116)
T 2kkq_A           95 EAGVTTC  101 (116)
T ss_dssp             TTEEEEE
T ss_pred             CCCeEEE
Confidence            9998754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.48  E-value=1.2e-13  Score=109.70  Aligned_cols=109  Identities=18%  Similarity=0.255  Sum_probs=68.5

Q ss_pred             CCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCee
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT  121 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~  121 (292)
                      .+....+.+|+.+.|.|.+.| |.+.+.|++++..+.... ....+... .++.|.|.+++.+|+|.|+|.|.|..|...
T Consensus       252 ~~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~-~~~~r~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~  328 (361)
T 2xot_A          252 KESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQ-GSNGSVSV-RNGDLFFKKVQVEDGGVYTCYAMGETFNET  328 (361)
T ss_dssp             CCCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSC-CSSSSEEE-ETTEEEESSCCTTSCEEEEEEEECSSCEEE
T ss_pred             cccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeec-ccCCceEe-ecCeEEEeecCcccCEEEEEEEecCCCccE
Confidence            345678999999999999998 889999999776543221 22223444 677999999999999999999999988777


Q ss_pred             EEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceE
Q psy15128        122 VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR  169 (292)
Q Consensus       122 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~  169 (292)
                      ..+.+.|..     .           ...|+.++|.|.+.|.|.|.+.
T Consensus       329 ~~~~l~V~~-----~-----------~~~g~~~~l~C~~~g~P~P~i~  360 (361)
T 2xot_A          329 LSVELKVYN-----F-----------TLHGHHDTLNAAADPWSHPQFE  360 (361)
T ss_dssp             EEEEEEEES-----S-----------CCC-------------------
T ss_pred             EEEEEEEEe-----e-----------eccCCceEEEEEeCCCCCCccc
Confidence            777776642     1           1578899999999999988763

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.48  E-value=1.3e-12  Score=82.09  Aligned_cols=85  Identities=16%  Similarity=0.095  Sum_probs=64.4

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeee---cEEEEccCCCCCCeEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE---GTLRIQGVQKEDAGFFVC  111 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~Y~C  111 (292)
                      .+|.+...+.+..+.+|+.++|.|.+.+ +.+.+.|+|++..+...     .+.....+   ..|.|.+++.+|+|.|+|
T Consensus         4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~-----~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C   77 (93)
T 1waa_A            4 ALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAAS-----PDCEIIEDGKKHILILHNCQLGMTGEVSF   77 (93)
T ss_dssp             CCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCB-----TTEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred             CCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCC-----CCEEEEEECCEEEEEECCCChhhCEEEEE
Confidence            3567777888899999999999999976 45789999999876321     12223222   479999999999999999


Q ss_pred             EEEeCCcCeeEEEEEEEE
Q psy15128        112 SALSVAGSTTVRAFLQVT  129 (292)
Q Consensus       112 ~~~~~~~~~~~~~~l~v~  129 (292)
                      .+.|.    ...+.|.|.
T Consensus        78 ~a~n~----~~sa~L~V~   91 (93)
T 1waa_A           78 QAANT----KSAANLKVK   91 (93)
T ss_dssp             EETTE----EEEEEEEEE
T ss_pred             EECCC----cEEEEEEEE
Confidence            99763    345566654

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=1.3e-13  Score=88.02  Aligned_cols=70  Identities=16%  Similarity=0.238  Sum_probs=56.3

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +.+..+.+|+.+.|.|.+   .|.+.+.|+|+|+++.  .+.++.+..++.     ...|.|..+..+|+|.|+|.|.|.
T Consensus        14 ~~~~~v~~G~~v~l~C~v---~p~p~v~W~k~g~~l~--~~~r~~i~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~N~   83 (100)
T 2yuz_A           14 LTDQTVNLGKEICLKCEI---SENIPGKWTKNGLPVQ--ESDRLKVVQKGR-----IHKLVIANALTEDEGDYVFAPDAY   83 (100)
T ss_dssp             CCCEEEETTSCCCEEEEC---SSCCCEEEEETTEECC--CCSSEEEEECSS-----EEEEEESSCCGGGCSEEEEEESSS
T ss_pred             CCceEEcCCCCEEEEEEe---CCCCeEEEEECCEECC--CCCcEEEEEeCC-----EEEEEECCCChhhCEEEEEEEcCC
Confidence            457789999999999997   6888999999999986  334444433321     236889999999999999999998

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=4.1e-14  Score=92.45  Aligned_cols=80  Identities=21%  Similarity=0.409  Sum_probs=63.0

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+............++      ...|.|..+..+|+|.|+|.|.|.
T Consensus        16 ~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~------~~~L~i~~v~~~D~G~Y~C~a~n~   88 (110)
T 2dm3_A           16 PGDLTVQEGKLCRMDCKV-SGLPTPDLSWQLDGKPVRPDSAHKMLVRENG------VHSLIIEPVTSRDAGIYTCIATNR   88 (110)
T ss_dssp             CCEEEEESSSCBCCEEEE-ECSSCCEEECBBSSSBCCCCSSEEEEECTTS------CEEEEESSCCGGGCSBBCEEEECS
T ss_pred             CCcEEEeCCCEEEEEEEE-EEcCCCEEEEEECCEECCCCCceEEEEecCC------eEEEEEeeCCcccCEEEEEEEECC
Confidence            356788999999999998 7999999999999988864433333333221      236889999999999999999999


Q ss_pred             ccccccC
Q psy15128        285 RNQQQHG  291 (292)
Q Consensus       285 ~g~~~~~  291 (292)
                      .|..+.+
T Consensus        89 ~g~~~~~   95 (110)
T 2dm3_A           89 AGQNSFS   95 (110)
T ss_dssp             SCEEEEC
T ss_pred             CCEEEEE
Confidence            9987643

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=8.9e-14  Score=92.01  Aligned_cols=77  Identities=18%  Similarity=0.254  Sum_probs=61.0

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      .....+.+|+.+.|.|.+ .|.|.+.+.|+++|..+. .  .++.+...     .....|.|..+...|+|.|+|.|.|.
T Consensus        31 ~~~~~v~~G~~~~l~C~~-~g~P~p~i~W~k~g~~l~-~--~~~~~~~~-----~~~~~L~i~~~~~~D~G~Y~C~a~N~  101 (118)
T 2e7c_A           31 RQTYIRKVGEQLNLVVPF-QGKPRPQVVWTKGGAPLD-T--SRVHVRTS-----DFDTVFFVRQAARSDSGEYELSVQIE  101 (118)
T ss_dssp             SSCEEEESSSCEEEEEEE-EEESCCEEEEEETTEECC-C--SSCEEEEC-----SSEEEEEESSCCTTTCEEEEEEEECS
T ss_pred             CCCEEEECCCEEEEEEEE-ccCCCCEEEEEECCEECC-C--CcEEEEEC-----CCeEEEEECCCChhcCEEEEEEEEeC
Confidence            457788999999999998 899999999999999884 2  22222211     11235889999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      .|.++.
T Consensus       102 ~G~~~~  107 (118)
T 2e7c_A          102 NMKDTA  107 (118)
T ss_dssp             SCEECC
T ss_pred             CCeEEE
Confidence            998764

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.47  E-value=9.3e-14  Score=90.42  Aligned_cols=77  Identities=13%  Similarity=0.264  Sum_probs=54.0

Q ss_pred             CCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128        204 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN  283 (292)
Q Consensus       204 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n  283 (292)
                      .+....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+..  ..+......       ...|.|..+..+|+|.|+|.|.|
T Consensus        16 ~~~~~~v~~G~~v~l~C~~-~g~p~p~i~W~~~~~~~~~--~~~~~~~~~-------~~~L~i~~v~~~D~G~Y~C~a~n   85 (108)
T 3kvq_A           16 NLENQTTSIGESIEVSCTA-SGNPPPQIMWFKDNETLVE--DSGIVLKDG-------NRNLTIRRVRKEDEGLYTCQACS   85 (108)
T ss_dssp             CCCCEEEETTCCEEEECBC-C----CCEEEEESSSBCCC--BTTEEEETT-------TTEEEECSCCGGGCEEEEEEEC-
T ss_pred             CCCCeEEeCCCeEEEEEEC-cCcCCCeEEEEECCeEccc--CCCeEEeCC-------CcEEEEeecCcccCEEEEEEEEe
Confidence            3467788999999999998 8999999999999988753  223322222       23688999999999999999999


Q ss_pred             ccccccc
Q psy15128        284 IRNQQQH  290 (292)
Q Consensus       284 ~~g~~~~  290 (292)
                      ..|....
T Consensus        86 ~~g~~~~   92 (108)
T 3kvq_A           86 VLGCAKV   92 (108)
T ss_dssp             ---CEEE
T ss_pred             CCCceEE
Confidence            9998754

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.47  E-value=6.5e-14  Score=90.13  Aligned_cols=78  Identities=19%  Similarity=0.241  Sum_probs=57.3

Q ss_pred             eCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        211 ASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       211 ~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      ..++.+.|.|.+ .|.|.|.++|+++|+++.........+...+..  .....|.|..+..+|+|.|+|.|+|..|+++.
T Consensus        14 ~~~~~~~~~c~v-~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~   90 (103)
T 1wwb_X           14 TSDHHWCIPFTV-KGNPKPALQWFYNGAILNESKYICTKIHVTNHT--EYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEK   90 (103)
T ss_dssp             CCCCEEEEEEEE-ECSSCCEEEEEETTEEECCCSSEEEEEEEECSS--EEEEEEEEESCCGGGCEEEEEEEECSSCEEEE
T ss_pred             eECcEEEEEEEE-EEeCCCEEEEEECCEECCCCCcEeEEEEecCCc--EEEEEEEECCCCcccCEEEEEEEEeCCCcEeE
Confidence            357789999998 999999999999999986432211222111110  11234889999999999999999999999865


Q ss_pred             C
Q psy15128        291 G  291 (292)
Q Consensus       291 ~  291 (292)
                      +
T Consensus        91 ~   91 (103)
T 1wwb_X           91 Q   91 (103)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.46  E-value=2.4e-13  Score=83.56  Aligned_cols=79  Identities=20%  Similarity=0.315  Sum_probs=57.4

Q ss_pred             CccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEE
Q psy15128         44 QDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  123 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~  123 (292)
                      ..+.+.+|+.+.|.|.+.+ |.+.+.|+|++..+..  +.............|.|.+++.+|+|.|+|.|    +.....
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a----~n~~~~   76 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLAS--QGRVQLEQAGARQVLRVQGARSGDAGEYLCDA----PQDSRI   76 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCC--CSSEEEEECSSCEEEEESSCSSTTCEEEEEEC----TTTCEE
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccc--cccEEEeecCCeEEEEecCCCCcccEEEEEEE----CCEEEE
Confidence            4567889999999999866 8889999999987742  22211111122347999999999999999987    444556


Q ss_pred             EEEEEE
Q psy15128        124 AFLQVT  129 (292)
Q Consensus       124 ~~l~v~  129 (292)
                      +.|.|.
T Consensus        77 a~l~V~   82 (84)
T 2lu7_A           77 FLVSVE   82 (84)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            666654

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.46  E-value=4.8e-13  Score=84.00  Aligned_cols=82  Identities=22%  Similarity=0.330  Sum_probs=64.4

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      ++.+...|....+.+|+.+.|.|.+.+.|.+.+.|++++..+...           ....|.|.+++.+|+|.|+|.+.|
T Consensus         3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-----------~~~~L~i~~v~~~d~G~Y~C~a~n   71 (91)
T 3bfo_A            3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-----------TKKLYMVPYVDLEHQGTYWCHVYN   71 (91)
T ss_dssp             CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTC-----------CSSEEEESSCCGGGCEEEEEEEEC
T ss_pred             ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcC-----------CCCeEEECCCCHHhCEEEEEEEEc
Confidence            345566677778999999999999999999999999998765311           135899999999999999999999


Q ss_pred             CCcCee-EEEEEEE
Q psy15128        116 VAGSTT-VRAFLQV  128 (292)
Q Consensus       116 ~~~~~~-~~~~l~v  128 (292)
                      ..+... ....|.|
T Consensus        72 ~~g~~~s~~~~l~V   85 (91)
T 3bfo_A           72 DRDSQDSKKVEIII   85 (91)
T ss_dssp             SSCEEECCCEEEEE
T ss_pred             CCCCEEeeeEEEEE
Confidence            887533 2344444

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=4.8e-14  Score=90.23  Aligned_cols=75  Identities=23%  Similarity=0.338  Sum_probs=59.9

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+...  .....        .....|.|..+..+|+|.|+|.|.|.
T Consensus        18 ~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~~~g~~~~~~--~~~~~--------~~~~~L~i~~v~~~D~G~Y~C~a~N~   86 (99)
T 2yr3_A           18 LKDCAVIEGQDFVLQCSV-RGTPVPRITWLLNGQPIQYA--RSTCE--------AGVAELHIQDALPEDHGTYTCLAENA   86 (99)
T ss_dssp             CCCEEECTTCCEEEECEE-EEESCCCCEEEESSSBCSSC--CCEEE--------TTEEEEEECSCCTTCCBCEEEEEECS
T ss_pred             CCCCEEeCCCeEEEEEEE-eeeCCCeEEEEECCEECccc--ceEee--------CCeEEEEECCCChhhCEEEEEEEEEC
Confidence            356788999999999998 89999999999999887522  11111        11236889999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      .|..+.
T Consensus        87 ~g~~~~   92 (99)
T 2yr3_A           87 LGQVSC   92 (99)
T ss_dssp             SCEEEE
T ss_pred             CCeEEE
Confidence            998764

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.46  E-value=1.6e-13  Score=90.71  Aligned_cols=83  Identities=23%  Similarity=0.389  Sum_probs=59.8

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCC---ceEEecCCCccccccccccccccccccccceeEEEE
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS---KRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIA  281 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a  281 (292)
                      +....+.+|+.+.|.|.+ .|.|.|.+.|+++|..+.....   .......++...   ...+.+..+...|+|.|+|.|
T Consensus        16 p~~~~v~~G~~v~L~C~~-~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~v~~~D~G~Y~C~a   91 (117)
T 2v9t_A           16 PSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLF---FLRIVHGRKSRPDEGVYVCVA   91 (117)
T ss_dssp             CCCEEECTTCCEEECCEE-EEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEE---ESSCCCBTTBCSSCEEEEEEE
T ss_pred             CCCEEEcCCCcEEEEEEC-CccCCCeEEEEECCEeccccCCCCcceeEEecCCcEE---EEEEEeCCCCcCcCEEEEEEE
Confidence            346778999999999998 8999999999999998853321   122222232211   112344467899999999999


Q ss_pred             eecccccccC
Q psy15128        282 KNIRNQQQHG  291 (292)
Q Consensus       282 ~n~~g~~~~~  291 (292)
                      .|..|.+..+
T Consensus        92 ~N~~G~~~s~  101 (117)
T 2v9t_A           92 RNYLGEAVSH  101 (117)
T ss_dssp             EETTEEEECC
T ss_pred             EeCccceEee
Confidence            9999998643

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.46  E-value=1.9e-14  Score=93.18  Aligned_cols=78  Identities=24%  Similarity=0.479  Sum_probs=62.2

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +....+.+|+.+.|.|.+ .|.|.+.+.|+++|..+..  ..++.+....     ....|.|..+...|+|.|+|.|.|.
T Consensus        21 p~~~~v~~G~~v~L~C~~-~g~p~p~v~W~k~g~~l~~--~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~   92 (106)
T 1nct_A           21 PRSMTVYEGESARFSCDT-DGEPVPTVTWLRKGQVLST--SARHQVTTTK-----YKSTFEISSVQASDEGNYSVVVENS   92 (106)
T ss_dssp             CCCEEESSSSCEECCEEE-ECSSCCBCCBCSSSSCCTT--CSSEEEEECS-----SEEEEEECCCCSSCCSEEEECCBCS
T ss_pred             CCCEEEeCCCcEEEEEEE-EEcCCCEEEEEECCEECCC--CCCEEEEECC-----CEEEEEECcCCchhCEEEEEEEEeC
Confidence            457789999999999998 8999999999999988853  3333332221     1236889999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      .|..+.
T Consensus        93 ~G~~~~   98 (106)
T 1nct_A           93 EGKQEA   98 (106)
T ss_dssp             SCBCCE
T ss_pred             CCeEEE
Confidence            998654

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.46  E-value=2.3e-13  Score=85.53  Aligned_cols=68  Identities=22%  Similarity=0.367  Sum_probs=57.2

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+.....                ..|.|..+...|+|.|+|.|.|.
T Consensus        10 p~~~~v~~G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~----------------~~L~i~~v~~~d~G~Y~C~a~n~   72 (91)
T 3bfo_A           10 PTSQKLMPGSTLVLQCVA-VGSPIPHYQWFKNELPLTHETK----------------KLYMVPYVDLEHQGTYWCHVYND   72 (91)
T ss_dssp             CCCEEECTTSCEEEECEE-ECSSCCEEEEEETTEECTTCCS----------------SEEEESSCCGGGCEEEEEEEECS
T ss_pred             CCccEecCCCcEEEEEEe-ccCCCCEEEEEcCCeeCCcCCC----------------CeEEECCCCHHhCEEEEEEEEcC
Confidence            346678999999999998 8999999999999998753221                25788899999999999999999


Q ss_pred             ccccc
Q psy15128        285 RNQQQ  289 (292)
Q Consensus       285 ~g~~~  289 (292)
                      .|...
T Consensus        73 ~g~~~   77 (91)
T 3bfo_A           73 RDSQD   77 (91)
T ss_dssp             SCEEE
T ss_pred             CCCEE
Confidence            99754

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.46  E-value=3e-13  Score=101.19  Aligned_cols=125  Identities=16%  Similarity=0.214  Sum_probs=79.9

Q ss_pred             cccCCcCCCeeEEEEEEeccc------------ccccccEEEEEe----CCCcEEeCCCccEEecCCcEEEEEEEeee-C
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVG------------ERETKPALLTVH----APPSFVVRPQDQKVGLNGIASFQCVAEGS-P   64 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~------------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~   64 (292)
                      |.+++.+|+|.|.|.+.+..+            ......+.|.|.    .+|.+...+....+..|+.++|.|.+.+. |
T Consensus        90 I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~~~p  169 (239)
T 3tv3_H           90 LNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  169 (239)
T ss_dssp             ECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEEEEBS
T ss_pred             ECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEeeEeC
Confidence            789999999999999986532            112233567775    24555544444445679999999999884 4


Q ss_pred             CC-eeEEEECCeEEeeccCC--CcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128         65 LP-SVFWTQEGSQVLMFPGN--AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  127 (292)
Q Consensus        65 ~~-~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~  127 (292)
                      .+ .+.|++++..+......  ......+...+.|.|.....+| |.|+|.+.|..+.......+.
T Consensus       170 ~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~  234 (239)
T 3tv3_H          170 EPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVE  234 (239)
T ss_dssp             SCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECC
T ss_pred             CCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEec
Confidence            33 58899987532111100  0111122334578899988888 999999999876655555443

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.45  E-value=1.8e-13  Score=109.31  Aligned_cols=143  Identities=13%  Similarity=0.110  Sum_probs=89.8

Q ss_pred             CCCCce-ecCCCeEEEEeEeccC-CCC---ceEEEeCCeeCCCCCc--cE-----EEcCCCcEEEEeeecCCCCCC----
Q psy15128        142 GPSNQT-LPLHSVAFLPCQAVGS-PPP---HIRWYKNGNSLPPEDT--RI-----NVSSSGSLQIDVLRDDFRAEP----  205 (292)
Q Consensus       142 ~~~~~~-~~~g~~v~l~C~~~~~-p~~---~~~W~~~~~~l~~~~~--~~-----~~~~~~~l~i~~~~~~d~g~~----  205 (292)
                      .+.... +.+|+.++|.|.+.+. |.|   .+.|++++..+.....  ..     .......|.|..+..+|+|.|    
T Consensus       173 ~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~  252 (376)
T 2aty_A          173 PPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRV  252 (376)
T ss_pred             CcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEE
Confidence            333334 7789999999999887 323   5999999866532110  00     011122577777777777721    


Q ss_pred             ----------------------cceEE-------eCCCceEEEeeCCCC-CC-CCeEEEeEcCeEeccCCCceEEecCCC
Q psy15128        206 ----------------------KDTRV-------ASGETALLECGPPKG-QP-EPTLHWKKNGQFIDLESSKRVSILGDP  254 (292)
Q Consensus       206 ----------------------~~~~~-------~~g~~~~l~C~~~~~-~p-~~~~~W~~~g~~~~~~~~~~~~~~~~~  254 (292)
                                            +.+.+       ..|+.++|.|.+ .+ +| .+.|.|+++|+++............++
T Consensus       253 ~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~-~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dg  331 (376)
T 2aty_A          253 NSAAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMI-TDFFPEDITVEWQWNGQPAENYKNTQPIMNTNE  331 (376)
T ss_pred             ecCCCCCceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEE-EEeECCCcEEEEEECCEECCCeEeCCceECCCC
Confidence                                  11111       247889999999 55 44 458999999998743222233334444


Q ss_pred             ccccccccccccccccccccceeEEEEeecccc
Q psy15128        255 WFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQ  287 (292)
Q Consensus       255 ~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~  287 (292)
                      .+.  ....|.+......|.|.|+|.|+|..-.
T Consensus       332 ty~--~~s~L~i~~~~~~~~~~YtC~v~h~~l~  362 (376)
T 2aty_A          332 SYF--VYSKLNVQKSNWEAGNTFTCSVLHEGLH  362 (376)
T ss_pred             CEE--EEEEEEEcHHHhCCCCcEEEEEEeCCCC
Confidence            443  2234666666667799999999998754

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.45  E-value=5.3e-13  Score=88.14  Aligned_cols=96  Identities=29%  Similarity=0.487  Sum_probs=67.7

Q ss_pred             eCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEc-----cCCCCCCeE
Q psy15128         34 HAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQ-----GVQKEDAGF  108 (292)
Q Consensus        34 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~-----~~~~~d~g~  108 (292)
                      ..+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+...............++.+.+.     +++.+|+|.
T Consensus         7 ~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~   86 (117)
T 2v9t_A            7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV   86 (117)
T ss_dssp             CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEE
T ss_pred             cCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEE
Confidence            346777777888889999999999999999999999999998764322111112222233444443     557899999


Q ss_pred             EEEEEEeCCcCeeE-EEEEEEE
Q psy15128        109 FVCSALSVAGSTTV-RAFLQVT  129 (292)
Q Consensus       109 Y~C~~~~~~~~~~~-~~~l~v~  129 (292)
                      |+|.+.|..|.... .+.+.+.
T Consensus        87 Y~C~a~N~~G~~~s~~~~l~~~  108 (117)
T 2v9t_A           87 YVCVARNYLGEAVSHDASLEVA  108 (117)
T ss_dssp             EEEEEEETTEEEECCCEEEEEC
T ss_pred             EEEEEEeCccceEeeeEEEEhh
Confidence            99999999886543 3444443

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.44  E-value=5e-13  Score=100.40  Aligned_cols=125  Identities=14%  Similarity=0.180  Sum_probs=77.8

Q ss_pred             cccCCcCCCeeEEEEEEecc---------------------cccccccEEEEEe----CCCcEEeCCCccEEecCCcEEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMV---------------------GERETKPALLTVH----APPSFVVRPQDQKVGLNGIASF   56 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~---------------------~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l   56 (292)
                      |.+++.+|+|.|.|.+.+..                     .......+.|.|.    .+|.+...+....+..|+.++|
T Consensus        82 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L  161 (248)
T 3u2s_H           82 MNSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAAL  161 (248)
T ss_dssp             ECSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEE
T ss_pred             ECCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEE
Confidence            78999999999999998742                     1122233677776    3444544444444567999999


Q ss_pred             EEEEeee-C-CCeeEEEECCeEEeeccCC--CcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128         57 QCVAEGS-P-LPSVFWTQEGSQVLMFPGN--AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ  127 (292)
Q Consensus        57 ~C~~~~~-~-~~~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~  127 (292)
                      .|.+.+. | ...+.|++++..+......  ......+...+.|.|.....+| |.|+|.+.|..+.......+.
T Consensus       162 ~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~  235 (248)
T 3u2s_H          162 GCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVE  235 (248)
T ss_dssp             EEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECC
T ss_pred             EEEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEc
Confidence            9999884 4 3479999987532111100  0111122334578899888888 999999999877665554443

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=1.4e-13  Score=87.95  Aligned_cols=73  Identities=14%  Similarity=0.238  Sum_probs=58.2

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +....+.+|+.+.|.|.+ .+.| +.+.|++++..+..  ..++.+..         ..|.|..+...|+|.|+|.|.|.
T Consensus        10 p~~~~v~~G~~v~L~C~~-~g~p-p~i~W~k~g~~~~~--~~~~~~~~---------~~L~i~~v~~~D~G~Y~C~a~n~   76 (99)
T 2cr3_A           10 VESFLVHPGDLLQLRCRL-RDDV-QSINWLRDGVQLAE--SNRTRITG---------EEVEVQDSVPADSGLYACVTSSP   76 (99)
T ss_dssp             EEECCBCTTSCEEEECCC-CSSC-CEEEEEESSSBCCC--CSSEEECS---------SEEEETTCCTTTCEEEEEEEEET
T ss_pred             CcCeEEeCCCcEEEEEEe-cCCC-CeEEEEECCEECCC--CCcEEEEC---------CEEEEccCCHHHCEEEEEEEEeC
Confidence            345678899999999998 7776 69999999988753  23444332         26889999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      .|..+.
T Consensus        77 ~g~~~~   82 (99)
T 2cr3_A           77 SGSDTT   82 (99)
T ss_dssp             TEEEEE
T ss_pred             CceEEE
Confidence            998653

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.44  E-value=8.8e-14  Score=89.16  Aligned_cols=77  Identities=19%  Similarity=0.338  Sum_probs=59.8

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCc-eEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK-RVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      ....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+...... ......       ....|.|..+...|+|.|+|.|.|.
T Consensus        16 ~~~~v~~G~~v~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~N~   87 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPA-GGNPMPTMRWLKNGKEFKQEHRIGGYKVRN-------QHWSLIMESVVPSDKGNYTCVVENE   87 (100)
T ss_dssp             CEEEECTTCCEEEECCE-EEESCCEEEEEETTEECCGGGSTTCCEEEG-------GGTEEEECSCCGGGCEEEEEEEEET
T ss_pred             cEEEecCCCEEEEEEEc-cccCCCEEEEEECCEEcccccccccEEEec-------CeEEEEEccCCcCCCEEEEEEEEeC
Confidence            46678899999999998 88999999999999988532211 111111       1236889999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      .|..+.
T Consensus        88 ~g~~~~   93 (100)
T 3caf_A           88 YGSINH   93 (100)
T ss_dssp             TEEEEE
T ss_pred             CCEEEE
Confidence            998754

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.44  E-value=1.3e-12  Score=84.91  Aligned_cols=95  Identities=21%  Similarity=0.346  Sum_probs=68.0

Q ss_pred             eCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccC---CCcceeEEe----eecEEEEccCCCCCC
Q psy15128         34 HAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPG---NAYGHLHVT----QEGTLRIQGVQKEDA  106 (292)
Q Consensus        34 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~~~----~~~~l~i~~~~~~d~  106 (292)
                      ..+|.+...+....+.+|++++|.|.+.+.|.+.+.|++++........   ....+....    ....|.|.+++.+|+
T Consensus         4 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~   83 (108)
T 3m45_A            4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDE   83 (108)
T ss_dssp             ----CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGC
T ss_pred             ccCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHC
Confidence            4456666777888999999999999999988889999998762221111   011222222    355899999999999


Q ss_pred             eEEEEEEEeCCcCeeEEEEEEEE
Q psy15128        107 GFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus       107 g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      |.|+|.+.+ .+.....+.|.|.
T Consensus        84 G~Y~C~~~n-~~~~~~~~~L~V~  105 (108)
T 3m45_A           84 GQYTCSLFT-MPVKTSKAYLTVL  105 (108)
T ss_dssp             EEEEEEECS-SSCEEEEEEEEEE
T ss_pred             eEEEEEEEc-CCCcEEEEEEEEE
Confidence            999999999 6766767777665

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.44  E-value=2.8e-11  Score=89.90  Aligned_cols=132  Identities=17%  Similarity=0.298  Sum_probs=80.5

Q ss_pred             CccEEecCCcEEEEEEEeee--CCCeeEEEECC--e--EEe-eccC---------CCcceeEEeeec-----EEEEccCC
Q psy15128         44 QDQKVGLNGIASFQCVAEGS--PLPSVFWTQEG--S--QVL-MFPG---------NAYGHLHVTQEG-----TLRIQGVQ  102 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~--~--~~~-~~~~---------~~~~~~~~~~~~-----~l~i~~~~  102 (292)
                      ....+.+|++++|.|.+.+.  +...+.|+|..  .  ... ....         ....++....+.     .|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (230)
T 3n9g_H            8 GAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLR   87 (230)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCC
Confidence            35678899999999999752  34579999842  1  111 1110         112344333222     59999999


Q ss_pred             CCCCeEEEEEEEeCC-----cCe---eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-C-CCceEEEe
Q psy15128        103 KEDAGFFVCSALSVA-----GST---TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-P-PPHIRWYK  172 (292)
Q Consensus       103 ~~d~g~Y~C~~~~~~-----~~~---~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p-~~~~~W~~  172 (292)
                      .+|+|.|.|.+.+..     +..   .....|.|.... ..+|.+...+....+..|+.++|.|.+.+. | .+.+.|  
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~-~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W--  164 (230)
T 3n9g_H           88 SEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSAS-TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--  164 (230)
T ss_dssp             GGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSC-CBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE--
T ss_pred             hhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecC-CCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE--
Confidence            999999999998653     111   122345553221 233444433333445689999999999775 4 345899  


Q ss_pred             CCeeCC
Q psy15128        173 NGNSLP  178 (292)
Q Consensus       173 ~~~~l~  178 (292)
                      ++..+.
T Consensus       165 ~~~~~~  170 (230)
T 3n9g_H          165 NSGALT  170 (230)
T ss_dssp             GGGTBC
T ss_pred             CCcccC
Confidence            655543

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.44  E-value=2.1e-12  Score=84.59  Aligned_cols=90  Identities=28%  Similarity=0.446  Sum_probs=69.6

Q ss_pred             EEEEEeC-CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeec---EEEEccCCCC
Q psy15128         29 ALLTVHA-PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKE  104 (292)
Q Consensus        29 ~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~  104 (292)
                      +.|.|.. +|.+...+....+.+|+.+.|.|.+.+.  +.+.|+|++..+..     ..+.....++   .|.|.++..+
T Consensus        11 ~~l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~-----~~~~~~~~~~~~~~L~I~~v~~~   83 (113)
T 2edh_A           11 AMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRD-----GDRHSLRQDGARCELQIRGLVAE   83 (113)
T ss_dssp             CCCCCCCSCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCC-----SSSEEEEEETTEEEEEECSCCST
T ss_pred             EEEEEEcCCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCC-----CCcEEEEECCCEEEEEECCCChh
Confidence            7788874 4577788888899999999999999764  68999999886531     1233333344   7999999999


Q ss_pred             CCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128        105 DAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus       105 d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      |+|.|+|.+    +.....+.|.|.
T Consensus        84 D~G~Y~C~a----~~~~~~~~l~V~  104 (113)
T 2edh_A           84 DAGEYLCMC----GKERTSAMLTVR  104 (113)
T ss_dssp             TCEEEEEEE----TTEEEEEEEEEC
T ss_pred             hCEEEEEEe----CCCCEEEEEEEe
Confidence            999999999    556666667665

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.44  E-value=6.9e-13  Score=85.89  Aligned_cols=87  Identities=18%  Similarity=0.245  Sum_probs=66.0

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeee---cEEEEccCCCCCCeEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE---GTLRIQGVQKEDAGFFVC  111 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~Y~C  111 (292)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+ +.|++++..+..  .   .+.....+   ..|.|.+++.+|+|.|+|
T Consensus         7 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~--~---~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   80 (106)
T 2dlt_A            7 GQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRP--S---KRITISHVGRFHKLVIDDVRPEDEGDYTF   80 (106)
T ss_dssp             CCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCC--C---SSCEEEEETTEEEEEESSCCTTTCSCEEE
T ss_pred             CCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcC--C---CCEEEEEeCCEEEEEECCCCcCCCEEEEE
Confidence            35677778888999999999999999988776 999999986632  1   12222222   489999999999999999


Q ss_pred             EEEeCCcCeeEEEEEEEE
Q psy15128        112 SALSVAGSTTVRAFLQVT  129 (292)
Q Consensus       112 ~~~~~~~~~~~~~~l~v~  129 (292)
                      .+.|.  .....+.|.|.
T Consensus        81 ~a~n~--~~~~~~~l~V~   96 (106)
T 2dlt_A           81 VPDGY--ALSLSAKLNFL   96 (106)
T ss_dssp             EEETS--CCCCCBCEEEE
T ss_pred             EEccC--CceEEEEEEEE
Confidence            99987  33344555554

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.43  E-value=8.7e-13  Score=84.78  Aligned_cols=79  Identities=15%  Similarity=0.217  Sum_probs=60.2

Q ss_pred             ecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCc-ceeEE----eeecEEEEccCCCCCCeEEEEEEEeCCcCeeEE
Q psy15128         49 GLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAY-GHLHV----TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR  123 (292)
Q Consensus        49 ~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-~~~~~----~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~  123 (292)
                      ..++.+.|.|.+.|.|.|.+.|++++..+...  ... .....    ...+.|.|.+++.+|+|.|+|.|.|..|.....
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~--~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   91 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNES--KYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ   91 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCC--SSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCC--CcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEE
Confidence            35778999999999999999999999876422  110 11111    123459999999999999999999999988877


Q ss_pred             EEEEEE
Q psy15128        124 AFLQVT  129 (292)
Q Consensus       124 ~~l~v~  129 (292)
                      +.|.|.
T Consensus        92 ~~l~V~   97 (103)
T 1wwb_X           92 ISAHFM   97 (103)
T ss_dssp             EEECCS
T ss_pred             EEEEEC
Confidence            777664

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.43  E-value=5.3e-13  Score=84.57  Aligned_cols=72  Identities=19%  Similarity=0.338  Sum_probs=57.8

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +....+.+|+.+.|.|.+ .+  .+.+.|+++|..+.  ...++....         ..|.|..+...|+|.|+|.|.|.
T Consensus         8 p~~~~v~~G~~~~l~C~~-~~--~p~v~W~k~g~~~~--~~~~~~~~~---------~~L~i~~~~~~D~G~Y~C~a~n~   73 (95)
T 4hwu_A            8 PEAYVVAPGESLELQCML-KD--AAVISWTKDGVHLG--PNNRTVLIG---------EYLQIKGATPRDSGLYACTAART   73 (95)
T ss_dssp             CEEEEECTTSCEEEECCC-CT--TCEEEEEETTEEEC--CCSSEEEET---------TEEEECSCCGGGCEEEEEEEECS
T ss_pred             CCcEEECCCCEEEEEEEe-CC--CCEEEEEECCEECC--CCceEEEeC---------CEEEECcCCcccCEEEEEEEccC
Confidence            456788999999999998 55  47999999999885  333444332         26889999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      .|..+.
T Consensus        74 ~g~~~~   79 (95)
T 4hwu_A           74 VDSETW   79 (95)
T ss_dssp             SCEEEE
T ss_pred             CCcEEE
Confidence            997654

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.43  E-value=1.1e-12  Score=83.69  Aligned_cols=79  Identities=29%  Similarity=0.420  Sum_probs=61.9

Q ss_pred             CCccEEecCCcEEEEEEEe-eeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCee
Q psy15128         43 PQDQKVGLNGIASFQCVAE-GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT  121 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~  121 (292)
                      +....+.+|+.++|.|.+. +.|.+.+.|++++.....       ......++.|.|.+++.+|+|.|+|.+.|..|...
T Consensus        17 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~-------~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~   89 (98)
T 1gl4_B           17 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP-------SRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQ   89 (98)
T ss_dssp             CCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCC-------TTEEEETTEEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred             CCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCC-------ceeecCCCEEEEeCCChhhCEEEEEEecCCCCccc
Confidence            3556788999999999998 578899999997543211       11233466899999999999999999999988777


Q ss_pred             EEEEEEE
Q psy15128        122 VRAFLQV  128 (292)
Q Consensus       122 ~~~~l~v  128 (292)
                      ....|.|
T Consensus        90 ~~~~l~V   96 (98)
T 1gl4_B           90 GTATLHV   96 (98)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEE
Confidence            6666665

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.42  E-value=8.8e-13  Score=84.89  Aligned_cols=85  Identities=18%  Similarity=0.238  Sum_probs=63.0

Q ss_pred             cEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEee---ecEEEEccCCCCCCeEEEEEEE
Q psy15128         38 SFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ---EGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        38 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      .+...+....+.+|+.++|.|.+.+ |.+.+.|+|++..+......   +.....   ...|.|.+++.+|+|.|+|.+.
T Consensus         9 ~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~---~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   84 (103)
T 1x44_A            9 MVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKS---RYRIRVEGKKHILIIEGATKADAAEYSVMTT   84 (103)
T ss_dssp             CCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTC---SEEEEEETTEEEEEEEEECTTTCSEEEEEET
T ss_pred             eeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCce---EEEEEEcCCEEEEEECCCCcccCEEEEEEEC
Confidence            3556677788999999999999977 66899999999876422111   222222   2589999999999999999997


Q ss_pred             eCCcCeeEEEEEEEEe
Q psy15128        115 SVAGSTTVRAFLQVTS  130 (292)
Q Consensus       115 ~~~~~~~~~~~l~v~~  130 (292)
                      |    ....+.|.|..
T Consensus        85 n----~~~~~~l~V~~   96 (103)
T 1x44_A           85 G----GQSSAKLSVDL   96 (103)
T ss_dssp             T----EEEEEEEEEEC
T ss_pred             C----CcEEEEEEEeC
Confidence            6    35556666653

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.42  E-value=7.3e-13  Score=88.16  Aligned_cols=86  Identities=19%  Similarity=0.242  Sum_probs=62.3

Q ss_pred             ccEEecCCcEEEEEEEeee--CCCeeEEEECCeEEeec--cCCCccee----EEeeecEEEEccCCCCCCeEEEEEEEeC
Q psy15128         45 DQKVGLNGIASFQCVAEGS--PLPSVFWTQEGSQVLMF--PGNAYGHL----HVTQEGTLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~--~~~~~~~~----~~~~~~~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                      ...+.+|+.+.|.|.+.+.  |.+.+.|++++..+...  ........    .....+.|.|.+++.+|+|.|+|.+.|.
T Consensus        17 ~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~   96 (122)
T 3s35_X           17 GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSG   96 (122)
T ss_dssp             CEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECS
T ss_pred             CEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccC
Confidence            3478899999999999984  44689999987643210  00000000    1123558999999999999999999999


Q ss_pred             CcCeeEEEEEEEEe
Q psy15128        117 AGSTTVRAFLQVTS  130 (292)
Q Consensus       117 ~~~~~~~~~l~v~~  130 (292)
                      .|.....+.|.|..
T Consensus        97 ~g~~~~~~~l~V~~  110 (122)
T 3s35_X           97 LMTKKNSTFVRVHE  110 (122)
T ss_dssp             SCEEEEEEEEEEEE
T ss_pred             CCceEEEEEEEEec
Confidence            88888777777764

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.42  E-value=4e-13  Score=93.25  Aligned_cols=78  Identities=19%  Similarity=0.277  Sum_probs=61.2

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      ....+..|+.+.|.|.+ .+.|.+.+.|+++|..+.......+....++      ...|.|..+...|+|.|+|.|.|..
T Consensus        49 ~~~~v~~G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~N~~  121 (154)
T 1fhg_A           49 LDMEVVEGSAARFDCKV-EGYPDPEVMWFKDDNPVKESRHFQIDYDEEG------NCSLTISEVCGDDDAKYTCKAVNSL  121 (154)
T ss_dssp             CCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCSSSEEEEECTTC------EEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CcEEEeCCCeEEEEEEE-EEecCCEEEEEECCEECCCCCcEEEEECCCC------eEEEEECCCChhcCEEEEEEEEECC
Confidence            45788999999999998 8999999999999998863322222221221      2368899999999999999999999


Q ss_pred             ccccc
Q psy15128        286 NQQQH  290 (292)
Q Consensus       286 g~~~~  290 (292)
                      |....
T Consensus       122 G~~~~  126 (154)
T 1fhg_A          122 GEATC  126 (154)
T ss_dssp             EEEEE
T ss_pred             CeEEE
Confidence            98754

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=2e-13  Score=86.72  Aligned_cols=83  Identities=18%  Similarity=0.438  Sum_probs=65.4

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      +|.+...+....+.+|+.++|.|.+.+.|.+.+.|+|++..+..           .....|.|.+++.+|+|.|+|.+.|
T Consensus        10 ~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~-----------~~~~~L~i~~v~~~d~G~Y~C~a~n   78 (96)
T 2ens_A           10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPL-----------PPSPVLILPEIGPQDQGTYSCVATH   78 (96)
T ss_dssp             SCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSS-----------CCCSEEEEESCCTTTCEEEECEECC
T ss_pred             CCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcC-----------CCCCEEEECCCCcccCEEEEEEEEe
Confidence            45566677778899999999999999988899999998876521           1246899999999999999999999


Q ss_pred             CCcCeeEEEEEEEE
Q psy15128        116 VAGSTTVRAFLQVT  129 (292)
Q Consensus       116 ~~~~~~~~~~l~v~  129 (292)
                      ..+.......+.+.
T Consensus        79 ~~~~~~~s~~~~v~   92 (96)
T 2ens_A           79 SSHGPQESRAVSIS   92 (96)
T ss_dssp             SSCCCEECCCEEEE
T ss_pred             CCCCcEEEEEEEEE
Confidence            66654444444444

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.42  E-value=7.7e-13  Score=82.60  Aligned_cols=66  Identities=18%  Similarity=0.224  Sum_probs=48.7

Q ss_pred             EEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         47 KVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        47 ~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      .+.+|+.+.|.|.+.+ |.+.+.|+|+|..+..  +.............|.|.+++.+|+|.|+|.|.|
T Consensus        17 ~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~--~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   82 (91)
T 2lvc_A           17 HAITSECVMLACEVDR-EDAPVRWYKDGQEVEE--SDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGD   82 (91)
T ss_dssp             ECCTTCCEEEEEECSC-TTSCCEEEETTSCCCC--CSSCEEEEETTEEEEEESSCCGGGCSEEEEECSS
T ss_pred             EEECCCcEEEEEEECC-CCcEEEEEECCEEeee--eeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcc
Confidence            3467999999999865 7889999999987642  2222111112234799999999999999999854

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.42  E-value=6.1e-13  Score=101.91  Aligned_cols=119  Identities=21%  Similarity=0.321  Sum_probs=77.6

Q ss_pred             cccCCcCCCeeEEEEEEeccc-----ccccccEEEEEeC------CCcEEeC-CCccEEecCCcEEEEEEEeee-CC-Ce
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVG-----ERETKPALLTVHA------PPSFVVR-PQDQKVGLNGIASFQCVAEGS-PL-PS   67 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~-----~~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~~~-~~-~~   67 (292)
                      |.+++.+|+|.|+|.+.+..+     ......+.|.|..      +|.+... +....+.+|+.++|.|.+.+. |. +.
T Consensus       104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~  183 (279)
T 2wbj_D          104 VTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE  183 (279)
T ss_dssp             ESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEE
T ss_pred             EccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcE
Confidence            789999999999999998421     1112236777764      4544433 333344578999999999986 43 69


Q ss_pred             eEEEECCeEEeeccCC---------CcceeEEeeecEEEEccCCCCC-CeEEEEEEEeCCcCe
Q psy15128         68 VFWTQEGSQVLMFPGN---------AYGHLHVTQEGTLRIQGVQKED-AGFFVCSALSVAGST  120 (292)
Q Consensus        68 v~W~~~~~~~~~~~~~---------~~~~~~~~~~~~l~i~~~~~~d-~g~Y~C~~~~~~~~~  120 (292)
                      +.|++++..+......         ......+.....|.|.+....| .|.|+|.+.|.....
T Consensus       184 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~  246 (279)
T 2wbj_D          184 LSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE  246 (279)
T ss_dssp             EEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCT
T ss_pred             EEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCC
Confidence            9999998765311000         0011122334468888887764 678999999876543

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.42  E-value=4.8e-13  Score=100.00  Aligned_cols=118  Identities=19%  Similarity=0.255  Sum_probs=74.1

Q ss_pred             cccCCcCCCeeEEEEEEeccc----ccccccEEEEEeC------CCcEEe-CCCccEEecCCcEEEEEEEeee-CCC-ee
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVG----ERETKPALLTVHA------PPSFVV-RPQDQKVGLNGIASFQCVAEGS-PLP-SV   68 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~----~~~~~~~~l~v~~------~p~~~~-~~~~~~~~~g~~~~l~C~~~~~-~~~-~v   68 (292)
                      |.+++.+|+|.|+|.+.+..+    ......+.|.|..      +|.+.. .+....+.+|+.++|.|.+.+. |.+ .+
T Consensus        76 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v  155 (238)
T 1bec_A           76 LELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVEL  155 (238)
T ss_dssp             ESSCCGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEE
T ss_pred             EecCCcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEE
Confidence            789999999999999998632    1122236788865      455543 3444455679999999999986 654 89


Q ss_pred             EEEECCeEEeeccCCC-c----ceeEEeeecEEEEccCCCCC-CeEEEEEEEeCCcC
Q psy15128         69 FWTQEGSQVLMFPGNA-Y----GHLHVTQEGTLRIQGVQKED-AGFFVCSALSVAGS  119 (292)
Q Consensus        69 ~W~~~~~~~~~~~~~~-~----~~~~~~~~~~l~i~~~~~~d-~g~Y~C~~~~~~~~  119 (292)
                      .|++++..+....... .    ....+.....|.|......| .|.|+|.+.|....
T Consensus       156 ~W~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~  212 (238)
T 1bec_A          156 SWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLS  212 (238)
T ss_dssp             EEEETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCCC
T ss_pred             EEEECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCCC
Confidence            9999998763211000 0    00011112234554444444 67899999987443

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.41  E-value=4.3e-13  Score=87.14  Aligned_cols=86  Identities=9%  Similarity=0.063  Sum_probs=59.0

Q ss_pred             CCcceEEeCCCceEEEeeCCCCCCC---CeEEEeEcCeEec-cCCCceEEecCCC-ccccccccccccccccccccceeE
Q psy15128        204 EPKDTRVASGETALLECGPPKGQPE---PTLHWKKNGQFID-LESSKRVSILGDP-WFDSRRSRSIFGSVLGALSDDQWK  278 (292)
Q Consensus       204 ~~~~~~~~~g~~~~l~C~~~~~~p~---~~~~W~~~g~~~~-~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~  278 (292)
                      .+....+.+|+.++|.|.+ .+.|.   +.+.|+|++.... .....++.+.... .........|.|..+...|+|.|+
T Consensus        10 ~p~~~~v~~G~~v~L~C~~-~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   88 (108)
T 3cx2_A           10 RPQDGEVTVGGSITFSARV-AGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYR   88 (108)
T ss_dssp             CCCCEEEETTCCEEEEEEE-ECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEE
T ss_pred             CCCcEEEeCCCCEEEEEEE-CCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccCEEEE
Confidence            3567789999999999998 78888   9999999873221 1112223221100 000011346899999999999999


Q ss_pred             EEEeeccccccc
Q psy15128        279 LIAKNIRNQQQH  290 (292)
Q Consensus       279 C~a~n~~g~~~~  290 (292)
                      |.|.|..|.++.
T Consensus        89 C~a~N~~G~~~~  100 (108)
T 3cx2_A           89 CEVSTKDKFDCS  100 (108)
T ss_dssp             EEEECSSCEEEE
T ss_pred             EEEecCCCceEE
Confidence            999999998764

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.41  E-value=6.1e-12  Score=109.26  Aligned_cols=129  Identities=11%  Similarity=0.145  Sum_probs=94.9

Q ss_pred             CCeEEEEeEeccCCCCceEEEeCCeeCCCCC-ccEEEcC----CCcEEEEeeecCCCC---------------------C
Q psy15128        151 HSVAFLPCQAVGSPPPHIRWYKNGNSLPPED-TRINVSS----SGSLQIDVLRDDFRA---------------------E  204 (292)
Q Consensus       151 g~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~-~~~~~~~----~~~l~i~~~~~~d~g---------------------~  204 (292)
                      ...+.|.|.+.|.|.|.+.|.++|..+.... ..+.+..    +..+.+..+...+.|                     .
T Consensus        91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p~~~~  170 (731)
T 2v5y_A           91 PGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLR  170 (731)
T ss_dssp             SEEEEEEEEETTCCCCSEEEEECCCCCSSCEEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSCEECC
T ss_pred             cceEEEEEecCCCCccceeEEEeCCcCCceeEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeeccccccccccc
Confidence            4578999999999999999999998765422 2233332    224777778777777                     2


Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEE-Ee--EcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEE
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLH-WK--KNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIA  281 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~-W~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a  281 (292)
                      +....+.+|+.++|.|.+ .|.|.+.+. |+  ++|+.+...  ....+...     .....|.|..+...|.|.|+|.|
T Consensus       171 ~~~~~v~~G~~v~l~C~~-~g~P~p~i~~W~~~~~g~~l~~~--~~~~~~~~-----~~~~~l~I~~~~~~d~g~Y~c~A  242 (731)
T 2v5y_A          171 IQNVEVNAGQFATFQCSA-IGRTVAGDRLWLQGIDVRDAPLK--EIKVTSSR-----RFIASFNVVNTTKRDAGKYRCMI  242 (731)
T ss_dssp             CCCEEEETTSCEEEEEEE-ESCCCTTCEEEEEESSSCCEEEE--EEEECCSS-----EEEEEEEECSCCTTTCEEEEEEE
T ss_pred             ccceEEeCCCcEEEEEEe-CCCCCCceeEEEecCCCcccccc--ceEEeccc-----cceEEEEEcccccccCeEEEEEE
Confidence            356788999999999998 899999887 87  678776421  11111111     11236889999999999999999


Q ss_pred             eecccc
Q psy15128        282 KNIRNQ  287 (292)
Q Consensus       282 ~n~~g~  287 (292)
                      .|..|.
T Consensus       243 ~n~~G~  248 (731)
T 2v5y_A          243 RTEGGV  248 (731)
T ss_dssp             EETTEE
T ss_pred             ECCCCC
Confidence            999997

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.41  E-value=3.6e-11  Score=94.63  Aligned_cols=128  Identities=20%  Similarity=0.241  Sum_probs=85.1

Q ss_pred             CCCccEEecCCcEEEEEEEeeeC--------------CCeeEEEEC--Ce--EEeeccCC--------Cccee-------
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGSP--------------LPSVFWTQE--GS--QVLMFPGN--------AYGHL-------   88 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~~--------------~~~v~W~~~--~~--~~~~~~~~--------~~~~~-------   88 (292)
                      .+..+.+.+|++++|.|.+...+              ...+.||+.  ++  .+......        ..++.       
T Consensus       164 q~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~  243 (401)
T 3f8u_B          164 HTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDD  243 (401)
T ss_dssp             SCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESC
T ss_pred             CCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeecc
Confidence            45567899999999999886432              246899974  22  22222111        11111       


Q ss_pred             -----EEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCce-ecCCC-eEEEEeEec
Q psy15128         89 -----HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQT-LPLHS-VAFLPCQAV  161 (292)
Q Consensus        89 -----~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~-~~~g~-~v~l~C~~~  161 (292)
                           ....+..|+|.+++.+|.|.|+|.+.+..+.....+.+.|..     +|.+.+.+.... +..|+ .++|.|.+.
T Consensus       244 ~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~-----pP~V~v~p~~~~~~~~G~~~vtL~C~a~  318 (401)
T 3f8u_B          244 DEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYK-----PPKVSLMPATLARAAPGEAPPELLCLVS  318 (401)
T ss_dssp             CCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEB-----CCEEEEESSSCCCCCTTCCCCCEEEEEE
T ss_pred             cccccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeecc-----CCeEeeccCcceeecCCCccEEEEEEec
Confidence                 112456899999999999999999998766555555666553     455555444433 45676 799999998


Q ss_pred             cC-CC--CceEEE-eCC
Q psy15128        162 GS-PP--PHIRWY-KNG  174 (292)
Q Consensus       162 ~~-p~--~~~~W~-~~~  174 (292)
                      +. |.  +.+.|. +++
T Consensus       319 GfyP~~~~~VtW~~rdg  335 (401)
T 3f8u_B          319 HFYPSGGLEVEWELRGG  335 (401)
T ss_dssp             EEBSSTTCEEEEEEESS
T ss_pred             CCcCCCCcEEEEEecCC
Confidence            76 55  689995 765

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=1.5e-13  Score=89.40  Aligned_cols=86  Identities=16%  Similarity=0.186  Sum_probs=59.8

Q ss_pred             CCcceEEeCCCceEEEeeCCCC---CCCCeEEEeEcCe-EeccCCCceEEecCC-CccccccccccccccccccccceeE
Q psy15128        204 EPKDTRVASGETALLECGPPKG---QPEPTLHWKKNGQ-FIDLESSKRVSILGD-PWFDSRRSRSIFGSVLGALSDDQWK  278 (292)
Q Consensus       204 ~~~~~~~~~g~~~~l~C~~~~~---~p~~~~~W~~~g~-~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~~~g~y~  278 (292)
                      .|....+.+|++++|.|.+ .+   .|.|.|.|+|++. .+....+.++.+... ..........|.|..+...|+|.|+
T Consensus        18 ~P~~v~V~eG~~v~L~C~v-~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   96 (118)
T 2edn_A           18 KPDSVSVETGKDAVVVAKV-NGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYR   96 (118)
T ss_dssp             CCCCCEEETTSCEECCEEE-ETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEE
T ss_pred             CCCCeEEeCCCCEEEEEEE-eccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEE
Confidence            4678889999999999998 55   4789999999752 222112233333211 0000011247999999999999999


Q ss_pred             EEEeeccccccc
Q psy15128        279 LIAKNIRNQQQH  290 (292)
Q Consensus       279 C~a~n~~g~~~~  290 (292)
                      |+|+|..|.++.
T Consensus        97 Cevsn~~g~~s~  108 (118)
T 2edn_A           97 LEVKAKDTCDSC  108 (118)
T ss_dssp             EEEECSSCEEEE
T ss_pred             EEEEEcCCcEEE
Confidence            999999998754

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.41  E-value=2.2e-12  Score=109.10  Aligned_cols=119  Identities=18%  Similarity=0.222  Sum_probs=81.7

Q ss_pred             CcccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcE-EeCCCccEEecCCcE-EEEEEEee-eCCCeeEEEECCeEE
Q psy15128          1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSF-VVRPQDQKVGLNGIA-SFQCVAEG-SPLPSVFWTQEGSQV   77 (292)
Q Consensus         1 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~~-~l~C~~~~-~~~~~v~W~~~~~~~   77 (292)
                      .|.+++.+|+|.|+|.+.+..+......+.|.|..+|.. .+.+....+..++.. .|.|.+.+ .|.+.+.|++++..+
T Consensus       435 ~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l  514 (581)
T 3o3u_N          435 FLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPL  514 (581)
T ss_dssp             EESSCCGGGCEEEEEEEECTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEEC
T ss_pred             EEeccccccCeEEEEEEEcCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCCeEEEEECCEEC
Confidence            378999999999999999988776344488999765432 223333345566555 66999988 599999999999876


Q ss_pred             eeccCCCcc---------eeEEeeecEEEEccCC-CCCCeEEEEEEEeCCcC
Q psy15128         78 LMFPGNAYG---------HLHVTQEGTLRIQGVQ-KEDAGFFVCSALSVAGS  119 (292)
Q Consensus        78 ~~~~~~~~~---------~~~~~~~~~l~i~~~~-~~d~g~Y~C~~~~~~~~  119 (292)
                      .........         .......+.|.|.+++ .++.|.|+|.++|....
T Consensus       515 ~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~  566 (581)
T 3o3u_N          515 VPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR  566 (581)
T ss_dssp             CTTSTTEEEEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred             CCCCCeEEEEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence            422111100         0011223479999998 55588999999987543

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.40  E-value=1.4e-12  Score=86.13  Aligned_cols=94  Identities=21%  Similarity=0.277  Sum_probs=65.9

Q ss_pred             EEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEE-----eeecEEEEccCCCC
Q psy15128         30 LLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV-----TQEGTLRIQGVQKE  104 (292)
Q Consensus        30 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~  104 (292)
                      .|.|..+|.+.......   ..+...|.|.+.|.|.+.+.|++++..+....   ......     ...+.|.|.++..+
T Consensus         2 ~L~V~~pP~i~~~~~~~---~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~   75 (118)
T 1wwc_A            2 ALTVYYPPRVVSLEEPE---LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESK---IIHVEYYQEGEISEGCLLFNKPTHY   75 (118)
T ss_dssp             --CCCCCCCCCCCCCCC---CCCEEEEEEEEECSSCCEEEEEETTEECCCSS---SEEEEEEECSSEEEEEEEEESCCGG
T ss_pred             EEEEecCCceeccCCCe---eccceEEEEEeeeeCCCeEEEEECCEECCCCC---ceeEEEeccCccccEEEEECCCChh
Confidence            46677777755442221   23667899999999999999999998764211   111111     13558999999999


Q ss_pred             CCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128        105 DAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus       105 d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      |+|.|+|.|.|..|.....+.+.+.
T Consensus        76 d~G~Y~C~a~N~~G~~~~~~~l~v~  100 (118)
T 1wwc_A           76 NNGNYTLIAKNPLGTANQTINGHFL  100 (118)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEECCS
T ss_pred             cCEEEEEEEECCCCeEeeEEEEEEc
Confidence            9999999999999887776666543

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.40  E-value=8e-13  Score=86.48  Aligned_cols=97  Identities=24%  Similarity=0.382  Sum_probs=67.5

Q ss_pred             EEeCCCcEEeCCCccEEecCCcEEEEEEEeee--CCCeeEEEECCeEEeeccCCCccee------EEeeecEEEEccCCC
Q psy15128         32 TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGS--PLPSVFWTQEGSQVLMFPGNAYGHL------HVTQEGTLRIQGVQK  103 (292)
Q Consensus        32 ~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~------~~~~~~~l~i~~~~~  103 (292)
                      ....+|.+...+....+.+|+.++|.|.+.+.  +.+.+.|++++..+.........+.      .....+.|.|.+++.
T Consensus         6 ~~~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   85 (112)
T 3so5_A            6 DDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEF   85 (112)
T ss_dssp             --CCSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCG
T ss_pred             CCCCCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEecccc
Confidence            33457788888888899999999999999865  3579999999876531110000000      111246899999999


Q ss_pred             CCCeEEEEEEEeCCcCe-eEEEEEEE
Q psy15128        104 EDAGFFVCSALSVAGST-TVRAFLQV  128 (292)
Q Consensus       104 ~d~g~Y~C~~~~~~~~~-~~~~~l~v  128 (292)
                      +|+|.|+|.+.|..|.. ...+.|.|
T Consensus        86 ~D~G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           86 TSEGXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ccCCeEEEEEEeCCCcEEEeEEEEEe
Confidence            99999999999987762 34444443

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.40  E-value=1.1e-12  Score=98.99  Aligned_cols=120  Identities=20%  Similarity=0.282  Sum_probs=77.2

Q ss_pred             cccCCcCCCeeEEEEEEeccc--ccccccEEEEEeC------CCcEEeC-CCccEEecCCcEEEEEEEeee-CC-CeeEE
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVG--ERETKPALLTVHA------PPSFVVR-PQDQKVGLNGIASFQCVAEGS-PL-PSVFW   70 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~--~~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~~~-~~-~~v~W   70 (292)
                      |.+++.+|+|.|+|.+.+...  ......+.|.|..      +|.+... +....+.+|+.++|.|.+.+. |. +.+.|
T Consensus        80 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W  159 (252)
T 1oga_E           80 VTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW  159 (252)
T ss_dssp             ECSCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             ECcCChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEE
Confidence            789999999999999987521  1112225677753      4555443 333345578999999999985 65 48999


Q ss_pred             EECCeEEeeccCCC---------cceeEEeeecEEEEccCCCC-CCeEEEEEEEeCCcCee
Q psy15128         71 TQEGSQVLMFPGNA---------YGHLHVTQEGTLRIQGVQKE-DAGFFVCSALSVAGSTT  121 (292)
Q Consensus        71 ~~~~~~~~~~~~~~---------~~~~~~~~~~~l~i~~~~~~-d~g~Y~C~~~~~~~~~~  121 (292)
                      ++++..+.......         .....+...+.|.|...... +.|.|+|.+.|......
T Consensus       160 ~~~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~  220 (252)
T 1oga_E          160 WVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  220 (252)
T ss_dssp             EETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             EECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCC
Confidence            99988663211000         01112223346888777654 67899999998765443

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=2.2e-12  Score=83.04  Aligned_cols=85  Identities=22%  Similarity=0.346  Sum_probs=64.5

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeee---cEEEEccCCCCCCeEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE---GTLRIQGVQKEDAGFFVC  111 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~Y~C  111 (292)
                      .+|.+...+....+.+|+.+.|.|.+.+ |.+.+.|++++..+..     ..+.....+   ..|.|.+++.+|+|.|+|
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~-----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   80 (103)
T 2edf_A            7 GPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRK-----SQKYDVVCEGTMAMLVIRGASLKDAGEYTC   80 (103)
T ss_dssp             CCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCC-----SSSEEEEEETTEEEEEESSCCTTTCSEEEE
T ss_pred             CCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccC-----CCCEEEEECCCEEEEEECCCCcccCEEEEE
Confidence            3567777778889999999999999987 7779999999876631     112222222   379999999999999999


Q ss_pred             EEEeCCcCeeEEEEEEEE
Q psy15128        112 SALSVAGSTTVRAFLQVT  129 (292)
Q Consensus       112 ~~~~~~~~~~~~~~l~v~  129 (292)
                      .+.|    ....+.|.|.
T Consensus        81 ~a~n----~~~~~~l~V~   94 (103)
T 2edf_A           81 EVEA----SKSTASLHVE   94 (103)
T ss_dssp             ECSS----CEEEEEEEEC
T ss_pred             EEcc----CCcEEEEEEe
Confidence            9987    3455566654

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.39  E-value=1.1e-12  Score=86.21  Aligned_cols=78  Identities=17%  Similarity=0.190  Sum_probs=59.8

Q ss_pred             cCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEE-------eeecEEEEccCCCCCCeEEEEEEEeCCcCeeE
Q psy15128         50 LNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV-------TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV  122 (292)
Q Consensus        50 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~  122 (292)
                      .+..+.|.|.+.|.|.|.|+|+|+|..+....  .......       ...+.|.|.+++..|+|.|+|.|.|..|....
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~   91 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETS--FIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA   91 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCS--SEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCC--ceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEE
Confidence            56789999999999999999999998764211  1100100       12457999999999999999999999998777


Q ss_pred             EEEEEEE
Q psy15128        123 RAFLQVT  129 (292)
Q Consensus       123 ~~~l~v~  129 (292)
                      .+.+.+.
T Consensus        92 t~~l~v~   98 (126)
T 1he7_A           92 SIMAAFM   98 (126)
T ss_dssp             EEEECCC
T ss_pred             EEEEEEE
Confidence            7766654

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.39  E-value=4.4e-12  Score=80.24  Aligned_cols=86  Identities=27%  Similarity=0.393  Sum_probs=62.2

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeC
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                      +.+...+....+.+|+.+.|.|.+ +.|.+.+.|++++..+..  ..............|.|.+++.+|+|.|+|.+   
T Consensus         9 ~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a---   82 (95)
T 2k1m_A            9 SAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISA--SNKYGLATEGTRHTLTVREVGPADQGSYAVIA---   82 (95)
T ss_dssp             CCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECS--STTCEEEEETTEEEEEESSCCTTCCSEEEEEE---
T ss_pred             CeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCC--CCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE---
Confidence            445556677889999999999999 778889999999987632  11111111112247999999999999999999   


Q ss_pred             CcCeeEEEEEEEE
Q psy15128        117 AGSTTVRAFLQVT  129 (292)
Q Consensus       117 ~~~~~~~~~l~v~  129 (292)
                       +.....+.|.|.
T Consensus        83 -g~~~~~~~l~V~   94 (95)
T 2k1m_A           83 -GSSKVKFDLKVI   94 (95)
T ss_dssp             -TTEEEEEEEEEE
T ss_pred             -CCceEEEEEEEe
Confidence             455555666553

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=6e-13  Score=87.53  Aligned_cols=96  Identities=18%  Similarity=0.189  Sum_probs=70.9

Q ss_pred             EEEEEeCCC-cEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCccee-EEeeecEEEEccCCCCCC
Q psy15128         29 ALLTVHAPP-SFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHL-HVTQEGTLRIQGVQKEDA  106 (292)
Q Consensus        29 ~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~  106 (292)
                      +.|.|..+| .+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+....  ..... .......|.|.+++.+|+
T Consensus         5 a~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~--~~~~~~~~~~~~~L~I~~v~~~D~   82 (115)
T 2cr6_A            5 SSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANE--LNEIDAQPGGYHVLTLRQLALKDS   82 (115)
T ss_dssp             CCCCCCSSCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSS--SCCBCCBTTTBCCBEECSCCTTTC
T ss_pred             EEEEEcCCCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCC--cEEEEEcCCCEEEEEEcCCChhhC
Confidence            556676655 56677788899999999999999998989999999998764221  11111 112234799999999999


Q ss_pred             eEEEEEEEeCCcCeeEEEEEEEEe
Q psy15128        107 GFFVCSALSVAGSTTVRAFLQVTS  130 (292)
Q Consensus       107 g~Y~C~~~~~~~~~~~~~~l~v~~  130 (292)
                      |.|+|.+    +.....+.|.|..
T Consensus        83 G~Y~C~~----g~~~~~~~L~V~~  102 (115)
T 2cr6_A           83 GTIYFEA----GDQRASAALRVTE  102 (115)
T ss_dssp             EEEEEEE----TTEECCEEEEEEC
T ss_pred             EEEEEEE----CCeeEEEEEEEEC
Confidence            9999994    5556667777763

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.39  E-value=2.1e-12  Score=86.11  Aligned_cols=88  Identities=14%  Similarity=0.214  Sum_probs=63.8

Q ss_pred             CCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeecc---CCCcceeEEe----eecEEEEccCCCCCCeEEEEEEE
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFP---GNAYGHLHVT----QEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~---~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      .+....+.+|++++|.|.+.+.|.+.+.|++.+..+....   .....+....    ....|.|.+++.+|+|.|+|.+.
T Consensus         7 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   86 (124)
T 3rbg_A            7 HTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHY   86 (124)
T ss_dssp             SEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEE
Confidence            3445678899999999999998889999998665432210   0111222221    24589999999999999999999


Q ss_pred             eCCcCeeEEEEEEEEe
Q psy15128        115 SVAGSTTVRAFLQVTS  130 (292)
Q Consensus       115 ~~~~~~~~~~~l~v~~  130 (292)
                      +. +.....+.|.|..
T Consensus        87 n~-g~~~~~~~l~V~~  101 (124)
T 3rbg_A           87 SD-SVSTKEVKVIVLA  101 (124)
T ss_dssp             SS-SEEEEEEEEEEEC
T ss_pred             cC-CCCcEEEEEEEEe
Confidence            98 7667777777654

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.39  E-value=8.1e-12  Score=92.53  Aligned_cols=131  Identities=18%  Similarity=0.248  Sum_probs=78.4

Q ss_pred             CccEEecCCcEEEEEEEeee--CCCeeEEEECC--e---EEeec---------cCCCcceeEEeee-----cEEEEccCC
Q psy15128         44 QDQKVGLNGIASFQCVAEGS--PLPSVFWTQEG--S---QVLMF---------PGNAYGHLHVTQE-----GTLRIQGVQ  102 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~--~---~~~~~---------~~~~~~~~~~~~~-----~~l~i~~~~  102 (292)
                      ....+.+|++++|.|.+.+.  +...+.|+|..  .   .+...         ......++....+     ..|+|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (226)
T 3mlr_H            8 GGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQ   87 (226)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCC
T ss_pred             CCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCC
Confidence            35678899999999998653  34579999842  1   11100         1112234443322     359999999


Q ss_pred             CCCCeEEEEEEEeCCc-------Ce--eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-C-CCceEEE
Q psy15128        103 KEDAGFFVCSALSVAG-------ST--TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-P-PPHIRWY  171 (292)
Q Consensus       103 ~~d~g~Y~C~~~~~~~-------~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p-~~~~~W~  171 (292)
                      .+|+|.|.|.+.+..+       ..  .....+.|... ...+|.+...+....+..|+.+.|.|.+.+. | .+.+.| 
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~-~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W-  165 (226)
T 3mlr_H           88 ASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSG-TTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW-  165 (226)
T ss_dssp             GGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCC-CCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE-
T ss_pred             cccCEEEEEeEccCCCcccccchhhhhCCccEEeeccC-CCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE-
Confidence            9999999999976421       00  11223444321 1223444432233335689999999999775 4 356899 


Q ss_pred             eCCeeC
Q psy15128        172 KNGNSL  177 (292)
Q Consensus       172 ~~~~~l  177 (292)
                       ++..+
T Consensus       166 -~~~~~  170 (226)
T 3mlr_H          166 -NSGAL  170 (226)
T ss_dssp             -GGGTC
T ss_pred             -CCccc
Confidence             44433

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.39  E-value=4.2e-13  Score=88.35  Aligned_cols=86  Identities=12%  Similarity=0.070  Sum_probs=59.3

Q ss_pred             CCcceEEeCCCceEEEeeCCCC---CCCCeEEEeEcCe-EeccCCCceEEecCCC-ccccccccccccccccccccceeE
Q psy15128        204 EPKDTRVASGETALLECGPPKG---QPEPTLHWKKNGQ-FIDLESSKRVSILGDP-WFDSRRSRSIFGSVLGALSDDQWK  278 (292)
Q Consensus       204 ~~~~~~~~~g~~~~l~C~~~~~---~p~~~~~W~~~g~-~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~  278 (292)
                      .+....+.+|++++|.|.+ .+   .|.|.|.|+|++. ++......++.+.... .........|.|..+...|+|+|+
T Consensus        13 ~P~~v~V~eG~~v~L~C~v-~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~   91 (126)
T 2dav_A           13 KPQGGTVKVGEDITFIAKV-KAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYR   91 (126)
T ss_dssp             CCCCCEEETTCCEEEEEEE-ECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEE
T ss_pred             cCCCeEEeCCCCEEEEEEE-eccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEEE
Confidence            4677889999999999997 45   4899999999752 1111112333332110 000011246999999999999999


Q ss_pred             EEEeeccccccc
Q psy15128        279 LIAKNIRNQQQH  290 (292)
Q Consensus       279 C~a~n~~g~~~~  290 (292)
                      |+|.|..|.++.
T Consensus        92 Cevsn~~g~~~~  103 (126)
T 2dav_A           92 CEVTYKDKFDSC  103 (126)
T ss_dssp             EEEECSSCEEEE
T ss_pred             EEEEeCCCcEEE
Confidence            999999988754

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.38  E-value=3.2e-12  Score=94.99  Aligned_cols=124  Identities=16%  Similarity=0.259  Sum_probs=79.3

Q ss_pred             cccCCcCCCeeEEEEEEeccc-------ccccccEEEEEe----CCCcEEeCCCccEEecCCcEEEEEEEeee-C-CCee
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVG-------ERETKPALLTVH----APPSFVVRPQDQKVGLNGIASFQCVAEGS-P-LPSV   68 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~-------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~-~~~v   68 (292)
                      |.+++.+|+|.|.|.+.+..+       ......+.|.|.    .+|.+...+....+..|+.++|.|.+.+. | ...+
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v  162 (230)
T 3n9g_H           83 LSSLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV  162 (230)
T ss_dssp             ECSCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEE
T ss_pred             ECCCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEE
Confidence            789999999999999987531       122233677775    24444433334445689999999999885 4 3468


Q ss_pred             EEEECCeEEee----ccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128         69 FWTQEGSQVLM----FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV  128 (292)
Q Consensus        69 ~W~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v  128 (292)
                      .|  ++..+..    ..........+...+.|.|.....+| |.|+|.+.+..+.......+.+
T Consensus       163 ~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v  223 (230)
T 3n9g_H          163 SW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  223 (230)
T ss_dssp             EE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred             EE--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccC
Confidence            99  4433210    00000011122334579999999999 9999999998776655555443

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.38  E-value=8.6e-13  Score=99.58  Aligned_cols=118  Identities=19%  Similarity=0.215  Sum_probs=76.2

Q ss_pred             cccCCcCCCeeEEEEEEeccc-----ccccccEEEEEeC------CCcEEeC-CCccEEecCCcEEEEEEEee-eCCC-e
Q psy15128          2 ITEVKKSDEGKYQCYVQNMVG-----ERETKPALLTVHA------PPSFVVR-PQDQKVGLNGIASFQCVAEG-SPLP-S   67 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~~~-----~~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~~-~~~~-~   67 (292)
                      |.+++.+|+|.|+|.+.+..+     ......+.|.|..      +|.+... +....+..|+.++|.|.+.+ .|.+ .
T Consensus        78 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~  157 (253)
T 3to4_D           78 LQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE  157 (253)
T ss_dssp             EEEESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEE
T ss_pred             EccCChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEE
Confidence            789999999999999986543     1122225777753      4444332 22223345789999999998 5666 8


Q ss_pred             eEEEECCeEEeeccCCCc---------ceeEEeeecEEEEccCCCCC-CeEEEEEEEeCCcC
Q psy15128         68 VFWTQEGSQVLMFPGNAY---------GHLHVTQEGTLRIQGVQKED-AGFFVCSALSVAGS  119 (292)
Q Consensus        68 v~W~~~~~~~~~~~~~~~---------~~~~~~~~~~l~i~~~~~~d-~g~Y~C~~~~~~~~  119 (292)
                      +.|++++..+........         ....+...+.|.|.....+| .|.|+|.+.+....
T Consensus       158 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l~  219 (253)
T 3to4_D          158 LSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  219 (253)
T ss_dssp             EEEEETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             EEEEECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCCC
Confidence            999999887632110000         11122334578888888777 77999999986543

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=4.4e-13  Score=85.99  Aligned_cols=75  Identities=17%  Similarity=0.223  Sum_probs=57.4

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCc--eEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK--RVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN  283 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n  283 (292)
                      ....+.+|+.+.|.|.+ .+.| +.+.|+++|+.+......  ++.+..++     ....|.|..+..+|+|.|+|.|.|
T Consensus        16 ~~~~v~~G~~v~l~C~~-~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~n   88 (101)
T 2edk_A           16 EDQQVFVGDRVEMAVEV-SEEG-AQVMWMKNGVELTREDSFKARYRFKKDG-----KRHILIFSDVVQEDRGRYQVITNG   88 (101)
T ss_dssp             CCEEEESSCCCBCCEEE-SCSS-CCCEEEESSCBCCCSCCSSCCCEEEECS-----SEEEEECSSCCGGGCSBEEEECSS
T ss_pred             CceEEcCCCCEEEEEEE-eCCC-CEEEEEECCEECCCCCCcceeEEEEECC-----CEEEEEECCCChhhCEEEEEEEcC
Confidence            46788999999999998 7777 899999999988644322  33333332     123688999999999999999999


Q ss_pred             cccc
Q psy15128        284 IRNQ  287 (292)
Q Consensus       284 ~~g~  287 (292)
                      ....
T Consensus        89 ~~~~   92 (101)
T 2edk_A           89 GQCE   92 (101)
T ss_dssp             CEEC
T ss_pred             CcEE
Confidence            5443

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=99.38  E-value=1.3e-12  Score=78.66  Aligned_cols=64  Identities=16%  Similarity=0.202  Sum_probs=51.4

Q ss_pred             CCCCCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccc-cccccceeEE
Q psy15128        201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVL-GALSDDQWKL  279 (292)
Q Consensus       201 d~g~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~~~g~y~C  279 (292)
                      |.+.++...+..|++++|+|.+ .+.|+  |+|+|+|.+|...        .        ...|.|..+ ..+|+|.|+|
T Consensus         2 ~~~~p~~~v~~~G~~v~L~C~~-~g~P~--i~W~kdg~~l~~~--------~--------~~~L~I~~v~~~~DsG~Y~C   62 (82)
T 3r08_E            2 DAENIEYKVSISGTSVELTCPL-DSDEN--LKWEKNGQELPQK--------H--------DKHLVLQDFSEVEDSGYYVC   62 (82)
T ss_dssp             CCCCCCCEEEEETTEEEEECSS-CCCSS--CEEEETTEECTTC--------C--------SSCCBCCSCCTTTTCSCEEE
T ss_pred             CCCCCceeEEEcCCeEEEEEEC-CCCCc--EEEEECCEECcCC--------C--------CCEEEECccCccCcCEEEEE
Confidence            4556677788899999999998 78874  9999999988522        1        125888885 7799999999


Q ss_pred             EEee
Q psy15128        280 IAKN  283 (292)
Q Consensus       280 ~a~n  283 (292)
                      .|.+
T Consensus        63 ~A~t   66 (82)
T 3r08_E           63 YTPA   66 (82)
T ss_dssp             ECSS
T ss_pred             EEcc
Confidence            9976

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.38  E-value=2.9e-12  Score=87.09  Aligned_cols=88  Identities=26%  Similarity=0.450  Sum_probs=65.2

Q ss_pred             EeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeec-----cCCCcceeEE------eeecEEEEccC
Q psy15128         33 VHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMF-----PGNAYGHLHV------TQEGTLRIQGV  101 (292)
Q Consensus        33 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~-----~~~~~~~~~~------~~~~~l~i~~~  101 (292)
                      ...+|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+...     .+....+...      ...+.|.|.++
T Consensus        18 ~~~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v   97 (137)
T 3qr2_A           18 GSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTL   97 (137)
T ss_dssp             ---CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSC
T ss_pred             CCCCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCC
Confidence            346888999999999999999999999999999999999976533110     0000111111      13568999999


Q ss_pred             CCCCCeEEEEEEEeCCcCe
Q psy15128        102 QKEDAGFFVCSALSVAGST  120 (292)
Q Consensus       102 ~~~d~g~Y~C~~~~~~~~~  120 (292)
                      +.+|+|.|+|.+.|..|..
T Consensus        98 ~~~D~G~Y~C~a~N~~G~~  116 (137)
T 3qr2_A           98 VEEDTGTYECRASNDPDRN  116 (137)
T ss_dssp             CGGGCEEEEEEEECCTTSS
T ss_pred             CcccCEEEEEEEEecCCcc
Confidence            9999999999999988765

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=2e-12  Score=83.38  Aligned_cols=87  Identities=18%  Similarity=0.267  Sum_probs=62.4

Q ss_pred             CCcEEeCCCc---cEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEE
Q psy15128         36 PPSFVVRPQD---QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS  112 (292)
Q Consensus        36 ~p~~~~~~~~---~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~  112 (292)
                      +|.+...+..   ..+.+|+.++|.|.+.+.|.+ +.|++++..+...  .............|.|.+++.+|+|.|+|.
T Consensus         7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~   83 (104)
T 2e6p_A            7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEES--ELLVVKMDGRKHRLILPEAKVQDSGEFECR   83 (104)
T ss_dssp             SSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCB--TTBEEEEETTEEEEEESSCCTTTCEEEEEE
T ss_pred             CCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCC--CCEEEEeCCCEEEEEECCCChhhCEEEEEE
Confidence            4555556655   678999999999999998888 9999999876321  111111111234799999999999999999


Q ss_pred             EEeCCcCeeEEEEEEEE
Q psy15128        113 ALSVAGSTTVRAFLQVT  129 (292)
Q Consensus       113 ~~~~~~~~~~~~~l~v~  129 (292)
                      +.|..+    .+.|.|.
T Consensus        84 a~n~~~----~~~l~V~   96 (104)
T 2e6p_A           84 TEGVSA----FFGVTVQ   96 (104)
T ss_dssp             CSSCCC----CEEEEEE
T ss_pred             ECCceE----EEEEEEc
Confidence            987633    4455554

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=5.2e-13  Score=85.65  Aligned_cols=89  Identities=19%  Similarity=0.199  Sum_probs=63.8

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCC--CcceeEEeeecEEEEccCCCCCCeEEEEEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGN--AYGHLHVTQEGTLRIQGVQKEDAGFFVCSA  113 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~  113 (292)
                      +|.+...+....+.+|+.+.|.|.+.+.| +.+.|++++..+......  .+..........|.|.++..+|+|.|+|.+
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   86 (101)
T 2edk_A            8 PVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVIT   86 (101)
T ss_dssp             CCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEEC
T ss_pred             CCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEEE
Confidence            56677777788899999999999999888 899999999876422211  111111112247999999999999999998


Q ss_pred             EeCCcCeeEEEEEEEE
Q psy15128        114 LSVAGSTTVRAFLQVT  129 (292)
Q Consensus       114 ~~~~~~~~~~~~l~v~  129 (292)
                      .|    ....+.|.|.
T Consensus        87 ~n----~~~~~~l~V~   98 (101)
T 2edk_A           87 NG----GQCEAELIVE   98 (101)
T ss_dssp             SS----CEECCBEEEE
T ss_pred             cC----CcEEEEEEEe
Confidence            76    3344555554

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.38  E-value=1.5e-11  Score=92.89  Aligned_cols=131  Identities=20%  Similarity=0.319  Sum_probs=76.9

Q ss_pred             CccEEecCCcEEEEEEEeee--CCCeeEEEECC--e---EEeec---------cCCCcceeEEeee-----cEEEEccCC
Q psy15128         44 QDQKVGLNGIASFQCVAEGS--PLPSVFWTQEG--S---QVLMF---------PGNAYGHLHVTQE-----GTLRIQGVQ  102 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~--~---~~~~~---------~~~~~~~~~~~~~-----~~l~i~~~~  102 (292)
                      ....+.+|++++|.|.+.+.  ....+.|+|..  .   .+...         ......+.....+     ..|+|.+++
T Consensus        31 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  110 (256)
T 3sob_H           31 GGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLR  110 (256)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCC
Confidence            45678899999999999753  34579999842  1   11110         1112234443322     259999999


Q ss_pred             CCCCeEEEEEEEeCCc---------C--eeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-C-CCceE
Q psy15128        103 KEDAGFFVCSALSVAG---------S--TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-P-PPHIR  169 (292)
Q Consensus       103 ~~d~g~Y~C~~~~~~~---------~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p-~~~~~  169 (292)
                      .+|+|.|.|.+.+..+         .  ......+.|... ...+|.+...+....+.+|+.++|.|.+.+. | ++.+.
T Consensus       111 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~-~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v~  189 (256)
T 3sob_H          111 AEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSA-STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS  189 (256)
T ss_dssp             GGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSS-CCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEEE
T ss_pred             cccCEEEEEEEecCCCccccccccceeEECCCEEEEEecC-CCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEEE
Confidence            9999999999986421         1  112234555322 2233444433333346789999999999774 4 34689


Q ss_pred             EEeCCeeC
Q psy15128        170 WYKNGNSL  177 (292)
Q Consensus       170 W~~~~~~l  177 (292)
                      |  ++..+
T Consensus       190 W--~~~~~  195 (256)
T 3sob_H          190 W--NSGAL  195 (256)
T ss_dssp             E--GGGTB
T ss_pred             E--CCccc
Confidence            9  55544

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.37  E-value=5.9e-11  Score=87.81  Aligned_cols=149  Identities=16%  Similarity=0.193  Sum_probs=89.0

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeeeC--CCeeEEEECC--e--EEeecc-----CCCcceeEEee-----ecEEEEccCC
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGSP--LPSVFWTQEG--S--QVLMFP-----GNAYGHLHVTQ-----EGTLRIQGVQ  102 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~--~~~~~~-----~~~~~~~~~~~-----~~~l~i~~~~  102 (292)
                      +...+..+.+.+|++++|.|.+.+.+  ...+.|+|..  .  ......     .....++....     ...|.|.+++
T Consensus         4 v~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   83 (229)
T 1hxm_A            4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS   83 (229)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             cEeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCC
Confidence            34456677899999999999997543  3579999852  1  111111     11123444432     2379999999


Q ss_pred             CCCCeEEEEEEEeCCc------C--eeEEEEEEEEeec-CCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC-ceEEE
Q psy15128        103 KEDAGFFVCSALSVAG------S--TTVRAFLQVTSVE-DTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP-HIRWY  171 (292)
Q Consensus       103 ~~d~g~Y~C~~~~~~~------~--~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~~~W~  171 (292)
                      .+|+|.|.|.+.+...      .  ......|.|.... ...+|.+.+       .. ..++|.|.+.+. |.+ .+.|+
T Consensus        84 ~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~~-------~~-~~~~L~C~~~g~~P~~i~v~W~  155 (229)
T 1hxm_A           84 ERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVFV-------MK-NGTNVACLVKEFYPKDIRINLV  155 (229)
T ss_dssp             GGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEEE-------EE-ETTEEEEEEESCBSSCCEEEEE
T ss_pred             HhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCCcEEE-------cC-CCCeEEEEEEEEeCCCEEEEEe
Confidence            9999999999986521      1  1122355554211 111233222       11 124899999876 544 79999


Q ss_pred             eCCeeCCCCCccEEEcCCCcEEEEe
Q psy15128        172 KNGNSLPPEDTRINVSSSGSLQIDV  196 (292)
Q Consensus       172 ~~~~~l~~~~~~~~~~~~~~l~i~~  196 (292)
                      ++ .++...........++++.+..
T Consensus       156 ~~-~~~~~~~~~~~~~~dg~y~~~~  179 (229)
T 1hxm_A          156 SS-KKITEFDPAIVISPSGKYNAVK  179 (229)
T ss_dssp             CS-SEEEECCCEEEECTTSSEEEEE
T ss_pred             cC-CEEecCccceEECCCCcEEEEE
Confidence            99 7665433333445667777763

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.37  E-value=6.7e-12  Score=80.67  Aligned_cols=85  Identities=18%  Similarity=0.228  Sum_probs=61.4

Q ss_pred             CCCcEEeCCCc-cEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeec---EEEEccCCCCCCeEEE
Q psy15128         35 APPSFVVRPQD-QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFV  110 (292)
Q Consensus        35 ~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~g~Y~  110 (292)
                      .+|.+...+.. ..+.+|+.+.|.|.+ +.|.+.+.|++++..+...    ..+.....++   .|.|.+++.+|+|.|+
T Consensus        14 ~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   88 (104)
T 1pd6_A           14 KSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMS----GSKYIFESIGAKRTLTISQCSLADDAAYQ   88 (104)
T ss_dssp             TTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCC----SSSSEEEEETTEEEEEECSCSSSSCEEEE
T ss_pred             CCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCC----CCeEEEEecCCEEEEEECCCCcccCEEEE
Confidence            34556555555 779999999999999 6788899999999876421    0122333333   8999999999999999


Q ss_pred             EEEEeCCcCeeEEEEEEE
Q psy15128        111 CSALSVAGSTTVRAFLQV  128 (292)
Q Consensus       111 C~~~~~~~~~~~~~~l~v  128 (292)
                      |.+    +.....+.|.|
T Consensus        89 C~a----~~~~~~~~l~V  102 (104)
T 1pd6_A           89 CVV----GGEKCSTELFV  102 (104)
T ss_dssp             EEE----TTEEECCEEEE
T ss_pred             EEE----CCCcEEEEEEE
Confidence            999    33344445544

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=2.7e-12  Score=82.62  Aligned_cols=89  Identities=22%  Similarity=0.239  Sum_probs=63.9

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCC-CeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPL-PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      ++.+...+....+.+|+.++|.|.+.+.|. +.+.|+|++..+..  ..............|.|.+++.+|+|.|+|.+.
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~--~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   85 (104)
T 2eny_A            8 HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGS--SSRFQATRQGRKYILVVREAAPSDAGEVVFSVR   85 (104)
T ss_dssp             CCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSB--CSSCEEEEETTEEEEEECSCCTTTCSCEEEEET
T ss_pred             CCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCC--CCCEEEEEcCCEEEEEECCCCHHHCEEEEEEEC
Confidence            345666677889999999999999988764 47999999987632  111111111123479999999999999999883


Q ss_pred             eCCcCeeEEEEEEEEe
Q psy15128        115 SVAGSTTVRAFLQVTS  130 (292)
Q Consensus       115 ~~~~~~~~~~~l~v~~  130 (292)
                          .....+.|.|..
T Consensus        86 ----~~~~~a~L~V~~   97 (104)
T 2eny_A           86 ----GLTSKASLIVRE   97 (104)
T ss_dssp             ----TEEEEECEEEEC
T ss_pred             ----CeeEEEEEEEeC
Confidence                445667777764

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.37  E-value=1.1e-12  Score=83.59  Aligned_cols=73  Identities=15%  Similarity=0.122  Sum_probs=56.1

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      ....+.+|+.+.|.|.+..+.|.+.+.|++++....  .. ....         ....|.|..+...|+|.|+|.|.|..
T Consensus        18 ~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~--~~-~~~~---------~~~~L~i~~v~~~D~G~Y~C~a~n~~   85 (98)
T 1gl4_B           18 RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL--PS-RAMD---------FNGILTIRNVQPSDAGTYVCTGSNMF   85 (98)
T ss_dssp             CEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCC--CT-TEEE---------ETTEEEECSCCGGGCEEEEEEEECSS
T ss_pred             CCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCC--Cc-eeec---------CCCEEEEeCCChhhCEEEEEEecCCC
Confidence            566889999999999983378999999999754332  11 1111         11268899999999999999999999


Q ss_pred             ccccc
Q psy15128        286 NQQQH  290 (292)
Q Consensus       286 g~~~~  290 (292)
                      |..+.
T Consensus        86 g~~~~   90 (98)
T 1gl4_B           86 AMDQG   90 (98)
T ss_dssp             CEEEE
T ss_pred             Ccccc
Confidence            98754

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=9.5e-13  Score=84.75  Aligned_cols=76  Identities=14%  Similarity=0.215  Sum_probs=57.4

Q ss_pred             CCcceEEeCCCceEEEeeCCCCCCC-CeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128        204 EPKDTRVASGETALLECGPPKGQPE-PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK  282 (292)
Q Consensus       204 ~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~  282 (292)
                      .+.+..+.+|+.++|.|.+ .+.|. +.+.|+|+|+++..+.  ++.+..++     ....|.|..+..+|+|.|+|.|.
T Consensus        14 ~~~~~~v~~G~~v~l~C~v-~~~~~~~~v~W~k~g~~i~~~~--r~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~   85 (104)
T 2eny_A           14 RLKTMEVLEGESCSFECVL-SHESASDPAMWTVGGKTVGSSS--RFQATRQG-----RKYILVVREAAPSDAGEVVFSVR   85 (104)
T ss_dssp             CCCCEEEESSCCEEEEEEC-SSCCCSSCBCCBSSSSBCSBCS--SCEEEEET-----TEEEEEECSCCTTTCSCEEEEET
T ss_pred             cCCCcEEcCCCcEEEEEEE-cCCCCCceeEEEECCEECCCCC--CEEEEEcC-----CEEEEEECCCCHHHCEEEEEEEC
Confidence            3467789999999999998 66664 5899999999886433  33333222     12368999999999999999998


Q ss_pred             ecccc
Q psy15128        283 NIRNQ  287 (292)
Q Consensus       283 n~~g~  287 (292)
                      |...+
T Consensus        86 ~~~~~   90 (104)
T 2eny_A           86 GLTSK   90 (104)
T ss_dssp             TEEEE
T ss_pred             CeeEE
Confidence            86544

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.37  E-value=1e-12  Score=86.81  Aligned_cols=73  Identities=23%  Similarity=0.294  Sum_probs=55.4

Q ss_pred             CceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128        214 ETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       214 ~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      +...|.|.+ .|.|.+.+.|+++|+.+......++.....+.   .....|.|..+...|+|.|+|.|+|..|.++.
T Consensus        21 ~~~~l~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~   93 (118)
T 1wwc_A           21 LEHCIEFVV-RGNPPPTLHWLHNGQPLRESKIIHVEYYQEGE---ISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQ   93 (118)
T ss_dssp             CEEEEEEEE-ECSSCCEEEEEETTEECCCSSSEEEEEEECSS---EEEEEEEEESCCGGGCEEEEEEEEETTEEEEE
T ss_pred             cceEEEEEe-eeeCCCeEEEEECCEECCCCCceeEEEeccCc---cccEEEEECCCChhcCEEEEEEEECCCCeEee
Confidence            567899998 89999999999999998644333333322211   12236889999999999999999999998764

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.37  E-value=9.5e-12  Score=91.10  Aligned_cols=130  Identities=18%  Similarity=0.242  Sum_probs=83.3

Q ss_pred             EEeCCCCceecCCCeEEEEeEec-cCC---CCceEEEeCCeeCCCCCccEEE-----cCCCcEEEEeeecCCCC------
Q psy15128        139 VQVGPSNQTLPLHSVAFLPCQAV-GSP---PPHIRWYKNGNSLPPEDTRINV-----SSSGSLQIDVLRDDFRA------  203 (292)
Q Consensus       139 ~~~~~~~~~~~~g~~v~l~C~~~-~~p---~~~~~W~~~~~~l~~~~~~~~~-----~~~~~l~i~~~~~~d~g------  203 (292)
                      +.+.|....+..|+.++|.|.+. +.|   +..+.|+|++.++......+.+     ...|.+++.-.......      
T Consensus         5 Vs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGaT~tLti~s~t~sdSG~YqCvVTDa~Gcs~tSs~V   84 (304)
T 3shs_A            5 VSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEV   84 (304)
T ss_dssp             EEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCCSSEEEESSCCGGGCEEEEEEEEETTTCCEEECCC
T ss_pred             EEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCCcceEEeeeccccCCeEEEEEEEECCCCeeeeeeE
Confidence            44556777789999999999984 546   4479999999887653332222     12233333211100000      


Q ss_pred             -------------CCcceEEeCCCceEEEeeC--CCCCC-----CCeEEEeEcCeEeccCCCceEEecCCCccccccccc
Q psy15128        204 -------------EPKDTRVASGETALLECGP--PKGQP-----EPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRS  263 (292)
Q Consensus       204 -------------~~~~~~~~~g~~~~l~C~~--~~~~p-----~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (292)
                                   .+....+..|..+.|.+.+  ..|.|     ...++|++++..+..   ..               .
T Consensus        85 tVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Isg---Aq---------------~  146 (304)
T 3shs_A           85 FLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT---TQ---------------D  146 (304)
T ss_dssp             EEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEES---SS---------------E
T ss_pred             EEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccC---cc---------------c
Confidence                         1233344567888998876  56666     469999999987731   10               2


Q ss_pred             cccccccccccceeEEEEeeccc
Q psy15128        264 IFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       264 l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      |.+......++|.|+|.++|..|
T Consensus       147 lT~sS~TateaG~YtV~VTn~~~  169 (304)
T 3shs_A          147 ITIQEFTADKNGVYTVKVWGESE  169 (304)
T ss_dssp             EEECSCCGGGCEEEEEEEESSSG
T ss_pred             cceeeEEecCCeEEEEEEEcCCC
Confidence            34455667799999999999977

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.36  E-value=1.5e-12  Score=84.29  Aligned_cols=72  Identities=17%  Similarity=0.266  Sum_probs=56.0

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +....+.+|+.+.|.|.+ .+.|.+ +.|+++|+.+....  ++.+..++     ....|.|..+..+|+|.|+|.|.|.
T Consensus        15 ~~~~~v~~G~~v~l~C~~-~~~~~~-v~W~k~g~~~~~~~--~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n~   85 (106)
T 2dlt_A           15 IADLTVKAAEQAVFKCEV-SDEKVT-GKWYKNGVEVRPSK--RITISHVG-----RFHKLVIDDVRPEDEGDYTFVPDGY   85 (106)
T ss_dssp             CCCEEEESSCCEECCCEE-SCSSCE-EEEEESSCBCCCCS--SCEEEEET-----TEEEEEESSCCTTTCSCEEEEEETS
T ss_pred             CCCeEEeCCCeEEEEEEE-cCCCcc-eEEEcCCEECcCCC--CEEEEEeC-----CEEEEEECCCCcCCCEEEEEEEccC
Confidence            356789999999999998 677777 99999999886333  33332222     1236889999999999999999998


Q ss_pred             c
Q psy15128        285 R  285 (292)
Q Consensus       285 ~  285 (292)
                      .
T Consensus        86 ~   86 (106)
T 2dlt_A           86 A   86 (106)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.36  E-value=1.4e-12  Score=83.90  Aligned_cols=73  Identities=19%  Similarity=0.257  Sum_probs=56.1

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +....+.+|+.++|.|.+ .+ |.+.+.|+++|+.+......++.+..++     ....|.|..+...|+|.|+|.|.|.
T Consensus        14 ~~~~~v~~G~~v~l~C~~-~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~n~   86 (103)
T 1x44_A           14 LEDTTAYCGERVELECEV-SE-DDANVKWFKNGEEIIPGPKSRYRIRVEG-----KKHILIIEGATKADAAEYSVMTTGG   86 (103)
T ss_dssp             CCCEEEETTEEEEEEEEC-SS-SSCCCEEEETTEECCCSTTCSEEEEEET-----TEEEEEEEEECTTTCSEEEEEETTE
T ss_pred             CCCEEEECCCCEEEEEEe-cC-CCCeEEEEECCEECCCCCceEEEEEEcC-----CEEEEEECCCCcccCEEEEEEECCC
Confidence            456788999999999998 66 6689999999999864432233333222     1236889999999999999999994

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=1.7e-12  Score=82.87  Aligned_cols=80  Identities=20%  Similarity=0.351  Sum_probs=60.7

Q ss_pred             CCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeE
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV  122 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~  122 (292)
                      +....+.+|+.++|.|.+.+.| +.+.|+|++..+..     ..+.... ...|.|.+++.+|+|.|+|.+.|..+....
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~-----~~~~~~~-~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~   82 (99)
T 2cr3_A           10 VESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAE-----SNRTRIT-GEEVEVQDSVPADSGLYACVTSSPSGSDTT   82 (99)
T ss_dssp             EEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCC-----CSSEEEC-SSEEEETTCCTTTCEEEEEEEEETTEEEEE
T ss_pred             CcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCC-----CCcEEEE-CCEEEEccCCHHHCEEEEEEEEeCCceEEE
Confidence            3455678899999999998876 69999999876531     1122222 568999999999999999999998887655


Q ss_pred             EEEEEEE
Q psy15128        123 RAFLQVT  129 (292)
Q Consensus       123 ~~~l~v~  129 (292)
                      .+.|.|.
T Consensus        83 ~~~l~V~   89 (99)
T 2cr3_A           83 YFSVNVS   89 (99)
T ss_dssp             EEEECBC
T ss_pred             EEEEEEe
Confidence            5555443

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=8.1e-12  Score=80.33  Aligned_cols=85  Identities=27%  Similarity=0.459  Sum_probs=64.5

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeec---EEEEccCCCCCCeEEEEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCS  112 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~g~Y~C~  112 (292)
                      +|.+...+....+.+|+.++|.|.+ +.|.+.+.|++++..+..     ..+.....++   .|.|.+++.+|+|.|+|.
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~-----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (103)
T 2dku_A            8 ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRA-----SGKHQPSQEGLTLRLTISALEKADSDTYTCD   81 (103)
T ss_dssp             CCCCSSCCCCEEEETTSEEEEEEEC-SSCCSCCEEEESSCBCCS-----SSSEEEEEETTEEEEEEESCCTTTCSEEEEE
T ss_pred             CCEeEecCCcEEEeCCCcEEEEEEe-CCCCCeEEEEeCCEECCC-----CCeEEEEeCCCEEEEEECCCCcccCEEEEEE
Confidence            5666667778899999999999995 778889999999976531     1233333333   899999999999999998


Q ss_pred             EEeCCcCeeEEEEEEEEe
Q psy15128        113 ALSVAGSTTVRAFLQVTS  130 (292)
Q Consensus       113 ~~~~~~~~~~~~~l~v~~  130 (292)
                          .+.....+.|.|..
T Consensus        82 ----~g~~~~~~~l~V~~   95 (103)
T 2dku_A           82 ----IGQAQSRAQLLVQG   95 (103)
T ss_dssp             ----CSSCBCCEEEEEEC
T ss_pred             ----eCCceEEEEEEEeC
Confidence                35555566677654

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.35  E-value=2.9e-12  Score=95.24  Aligned_cols=117  Identities=17%  Similarity=0.254  Sum_probs=73.8

Q ss_pred             cccCCcCCCeeEEEEEEec---ccccccccEEEEEeC---------CCcEEe-CCCccEEecCCcEEEEEEEeee-CC-C
Q psy15128          2 ITEVKKSDEGKYQCYVQNM---VGERETKPALLTVHA---------PPSFVV-RPQDQKVGLNGIASFQCVAEGS-PL-P   66 (292)
Q Consensus         2 i~~v~~~D~G~Y~C~~~~~---~~~~~~~~~~l~v~~---------~p~~~~-~~~~~~~~~g~~~~l~C~~~~~-~~-~   66 (292)
                      |.+++.+|+|.|.|.+.+.   ........+.|.|..         +|...+ .+....+..|+.++|.|.+.+. |. +
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~  162 (230)
T 1ypz_F           83 IYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVI  162 (230)
T ss_dssp             ECSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCC
T ss_pred             ECcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCe
Confidence            7899999999999999874   111222336788862         233222 2333344568899999999886 65 5


Q ss_pred             eeEEEE-CCeEEeecc-CCC-cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         67 SVFWTQ-EGSQVLMFP-GNA-YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        67 ~v~W~~-~~~~~~~~~-~~~-~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      .+.|++ ++..+.... ... .........+.|.|.+... + |.|+|.+.|.....
T Consensus       163 ~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~  217 (230)
T 1ypz_F          163 RVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKG  217 (230)
T ss_dssp             EEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTT
T ss_pred             EEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCC
Confidence            899999 665442110 000 0001122234688888776 4 99999999876643

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=9.9e-12  Score=81.38  Aligned_cols=87  Identities=23%  Similarity=0.320  Sum_probs=62.4

Q ss_pred             EeCCCcEEeCCCc---cEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEee---ecEEEEccCCCCCC
Q psy15128         33 VHAPPSFVVRPQD---QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ---EGTLRIQGVQKEDA  106 (292)
Q Consensus        33 v~~~p~~~~~~~~---~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~  106 (292)
                      |..+|.+...+..   ..+.+|+.+.|.|.+. .|.+.+.|+|++..+...     .+.....   ...|.|.+++.+|+
T Consensus         7 v~~pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~-----~~~~~~~~~~~~~L~I~~v~~~D~   80 (113)
T 2cpc_A            7 GTDVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVES-----PALLLQKEDTVRRLVLPAVQLEDS   80 (113)
T ss_dssp             CCSCSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEETTEECCCB-----TTBEEEECSSEEEEEESSCCTTTC
T ss_pred             cccCCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEECCEECccC-----CCEEEEECCCEEEEEECCCCcccC
Confidence            3445555554444   5678899999999995 788899999999876321     1222222   25899999999999


Q ss_pred             eEEEEEEEeCCcCeeEEEEEEEE
Q psy15128        107 GFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus       107 g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      |.|+|.+.|    ....+.|.|.
T Consensus        81 G~Y~C~a~n----~~~~~~l~V~   99 (113)
T 2cpc_A           81 GEYLCEIDD----ESASFTVTVT   99 (113)
T ss_dssp             EEEEEESSS----CEEEEEEEEE
T ss_pred             EEEEEEEec----CcEEEEEEEe
Confidence            999999977    3445566665

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.34  E-value=1e-11  Score=79.35  Aligned_cols=84  Identities=19%  Similarity=0.218  Sum_probs=63.2

Q ss_pred             CCcEEeCCCc-cEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEee---ecEEEEccCCCCCCeEEEE
Q psy15128         36 PPSFVVRPQD-QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ---EGTLRIQGVQKEDAGFFVC  111 (292)
Q Consensus        36 ~p~~~~~~~~-~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y~C  111 (292)
                      +|.+...+.. ..+.+|+.+.|.|.+. .|.+.+.|++++..+...     .+.....   ...|.|.+++.+|+|.|+|
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~-----~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C   80 (100)
T 2yuv_A            7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPS-----TKYIFEHKGCQRILFINNCQMTDDSEYYV   80 (100)
T ss_dssp             SCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCB-----TTEEEEEETTEEEEEEEEECTTTCCEEEE
T ss_pred             CCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCC-----CCEEEEecCCEEEEEEcCCCcCcCEEEEE
Confidence            5677766665 5788999999999998 688899999999766321     1222222   2379999999999999999


Q ss_pred             EEEeCCcCeeEEEEEEEE
Q psy15128        112 SALSVAGSTTVRAFLQVT  129 (292)
Q Consensus       112 ~~~~~~~~~~~~~~l~v~  129 (292)
                      .+    +.....+.|.|.
T Consensus        81 ~a----g~~~~~~~l~V~   94 (100)
T 2yuv_A           81 TA----GDEKCSTELFVR   94 (100)
T ss_dssp             EE----TTEEEEEEEEEC
T ss_pred             EE----CCceEEEEEEEe
Confidence            99    555666666665

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.34  E-value=1e-10  Score=101.65  Aligned_cols=141  Identities=16%  Similarity=0.171  Sum_probs=91.7

Q ss_pred             CCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCC-CeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128         51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKED-AGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus        51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      .+.+.|.|.+.|.|.+.+.|.++|..+.     .      .....+.|..+...+ .+.|.|.+.+..|..... .+.+.
T Consensus        91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~-----~------~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~-~v~~~  158 (731)
T 2v5y_A           91 PGLLNVYVKVNNGPLGNPIWNISGDPTR-----T------WNRAELAISTFWPNFYQVIFEVITSGHQGYLAID-EVKVL  158 (731)
T ss_dssp             SEEEEEEEEETTCCCCSEEEEECCCCCS-----S------CEEEEEEECCCTTSCEEEEEEEEECSSCCEEEEC-CBEEE
T ss_pred             cceEEEEEecCCCCccceeEEEeCCcCC-----c------eeEEEEEEeecCCCceEEEEEEEecCCceEEEEe-eEEee
Confidence            3578999999999999999999987541     0      112345555543333 478888776665543322 22222


Q ss_pred             eecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceE-EE--eCCeeCCCCCccEEEcC---CCcEEEEeeecCCCC
Q psy15128        130 SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR-WY--KNGNSLPPEDTRINVSS---SGSLQIDVLRDDFRA  203 (292)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~-W~--~~~~~l~~~~~~~~~~~---~~~l~i~~~~~~d~g  203 (292)
                      ......+|.+. .+....+..|+.++|.|.+.+.|.|.+. |+  ++|..+.... ...+..   .+.|.|.++...|.|
T Consensus       159 ~~~~~~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~-~~~~~~~~~~~~l~I~~~~~~d~g  236 (731)
T 2v5y_A          159 GHPCTRTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKE-IKVTSSRRFIASFNVVNTTKRDAG  236 (731)
T ss_dssp             SSCCSSSCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEE-EEECCSSEEEEEEEECSCCTTTCE
T ss_pred             ecccccccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccc-eEEeccccceEEEEEcccccccCe
Confidence            21122344444 5567788999999999999999999987 88  6777664321 111111   247899999999988


Q ss_pred             CC
Q psy15128        204 EP  205 (292)
Q Consensus       204 ~~  205 (292)
                      .|
T Consensus       237 ~Y  238 (731)
T 2v5y_A          237 KY  238 (731)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.34  E-value=1.4e-13  Score=91.63  Aligned_cols=82  Identities=13%  Similarity=0.164  Sum_probs=60.3

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCe-EEEeEcCeEeccCCCceEEecCCCcccccccccccccccccccc-ceeEEEEeec
Q psy15128        207 DTRVASGETALLECGPPKGQPEPT-LHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSD-DQWKLIAKNI  284 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~-g~y~C~a~n~  284 (292)
                      ...+.+|+.+.|.|.+ .+.|.|. +.|+++++.+......++.+..... .......|.|..+..+|. |.|+|.|.|.
T Consensus        22 ~~~~~~G~~v~l~C~~-~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~   99 (122)
T 2cry_A           22 TQHALHGEKGQIKCFI-RSTPPPDRIAWSWKENVLESGTSGRYTVETIST-EEGVISTLTISNIVRADFQTIYNCTAWNS   99 (122)
T ss_dssp             CCCCCTTSCCCCCEEE-CCSSCCSEEEEESSSCEECSEEETTEEEEEEEE-TTEEEEEEECTTCCHHHHHSCEEEEEECS
T ss_pred             eEEEecCCCEEEEEEE-eecCCCcEeEEEECCEEccCCCCCCEEEEEecC-CCceEEEEEEcCCChhhCCceEEEEEECC
Confidence            4467889999999998 8999886 9999999988632233333321100 001133689999999998 9999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      .|.+..
T Consensus       100 ~G~~~~  105 (122)
T 2cry_A          100 FGSDTE  105 (122)
T ss_dssp             SCEEEE
T ss_pred             CCeEEE
Confidence            998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	292
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	2e-14
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	3e-14
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	2e-04
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	0.001
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	1e-13
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	1e-04
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	3e-04
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-13
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	6e-05
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	5e-13
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	4e-04
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	7e-13
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	0.003
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	2e-12
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	2e-05
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	0.002
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	3e-12
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	7e-12
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	0.004
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	2e-11
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	3e-07
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-11
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-05
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	5e-04
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	4e-11
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-10
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	0.001
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	0.002
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	6e-10
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	7e-10
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	8e-10
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	1e-05
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	0.003
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	8e-10
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	0.002
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	0.004
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	1e-09
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	3e-04
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	2e-09
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	3e-04
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	6e-09
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	8e-09
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	1e-08
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	2e-08
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	6e-04
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	3e-08
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	0.002
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	0.003
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	3e-08
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	9e-08
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	8e-04
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	2e-07
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	0.003
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	2e-07
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	0.003
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	3e-07
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	5e-07
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	1e-04
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	5e-07
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	9e-07
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-06
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	0.002
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	1e-06
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	3e-06
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	3e-06
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	0.002
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	9e-06
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	1e-05
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	1e-05
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	0.002
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	2e-05
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	1e-04
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	3e-05
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	4e-05
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	4e-05
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	1e-04
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	3e-04
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	2e-04
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	2e-04
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	0.002
d1f2qa1	82	b.1.1.4 (A:4-85) IgE high affinity receptor alpha	3e-04
d1dr9a1	105	b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (	9e-04
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	0.001
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	0.004
d1l6za1	107	b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C	0.001
d2fcba1	85	b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD3	0.003
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	0.003
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	0.004

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 65.7 bits (159), Expect = 2e-14
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 37  PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTL 96
           P F+V+P   +VG    A+F C    S  P V W ++  +  +     Y   +   +  L
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRE--LKQSVKYMKRYNGNDYGL 59

Query: 97  RIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
            I  V+ +D G +   A +  G+     FL VT       P
Sbjct: 60  TINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT---RHSEP 97

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (158), Expect = 3e-14
 Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 2/99 (2%)

Query: 37  PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTL 96
           P  +  P+DQKV             G+   +  W +   Q+           +      L
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQE--SEHMKVENSENGSKL 58

Query: 97  RIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTP 135
            I   ++E  G +     +  GS   +  L V    D P
Sbjct: 59  TILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPP 97

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 2e-04
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 1  MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
           I   ++   G Y   V+N +G R+ +   LTV   P 
Sbjct: 59 TILAARQEHCGCYTLLVENKLGSRQAQ-VNLTVVDKPD 95

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.001
 Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED 181
           P I+Q  P +Q +       L  +  G+ P    W K    +   +
Sbjct: 1   PQIIQ-FPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESE 45

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 63.2 bits (153), Expect = 1e-13
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 35  APPSFVVRPQDQKVGLNG-IASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE 93
           + P +  +P+   V   G   +  C   G P P+V W+              G      +
Sbjct: 1   SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWS-------HNAKPLSGGRATVTD 53

Query: 94  GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
             L I+GV+  D G++ C A +  G       +QV
Sbjct: 54  SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 38.2 bits (88), Expect = 1e-04
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 1  MITEVKKSDEGKYQCYVQNMVGERETKPALLTVH 34
          +I  VK  D+G Y C   N  G++  +  L+ V+
Sbjct: 57 VIKGVKNGDKGYYGCRATNEHGDKYFE-TLVQVN 89

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 37.0 bits (85), Expect = 3e-04
 Identities = 9/40 (22%), Positives = 15/40 (37%)

Query: 134 TPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKN 173
           + P   Q       +       +PC+  G P P++ W  N
Sbjct: 1   SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHN 40

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.4 bits (153), Expect = 1e-13
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 2/97 (2%)

Query: 34  HAPPSFVVRPQ--DQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
           + PP+   R    +    L    +  C A+G P P++ WT++G  +     +   H+   
Sbjct: 1   NVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSD 60

Query: 92  QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
               L I+ V K D   +VC A + AG       L+V
Sbjct: 61  DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 97

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.1 bits (90), Expect = 6e-05
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 136 PPIVQVGPS--NQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP 179
           PP VQ   S  N T  L     L C A G P P + W K+G  +  
Sbjct: 3   PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIEN 48

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 5e-13
 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 1/95 (1%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
            P    R Q Q VG    A F+    G P P   W +     +      Y +        
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYK-NGVKIERSDRIYWYWPEDNVCE 62

Query: 96  LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS 130
           L I+ V  ED+   +  A+++AG T+  AFL V +
Sbjct: 63  LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 97

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 4e-04
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 130 SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSS 188
           S+E   P I +    +QT+   S A    + VG P P   WYKNG  +   D       
Sbjct: 1   SME--APKIFE-RIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWP 56

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 61.4 bits (148), Expect = 7e-13
 Identities = 29/107 (27%), Positives = 41/107 (38%), Gaps = 6/107 (5%)

Query: 25  ETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNA 84
           E KP     H  P F     D +V     A F C  EG P P V W ++ + V     + 
Sbjct: 2   EEKP-----HVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESR-HF 55

Query: 85  YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSV 131
                     +L I  V  +D   + C A++  G  T  A L V ++
Sbjct: 56  QIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM 102

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 34.5 bits (78), Expect = 0.003
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA 35
            I+EV   D+ KY C   N +GE     A L V  
Sbjct: 68  TISEVCGDDDAKYTCKAVNSLGEATCT-AELLVET 101

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 60.2 bits (145), Expect = 2e-12
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 9/98 (9%)

Query: 34  HAPPSFVVR-PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
              PS   + P D       + + +C A G+P+P + W             +     ++ 
Sbjct: 2   QYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKW--------RKLDGSQTSKWLSS 53

Query: 93  EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS 130
           E  L IQ V  ED G + C A ++ G  T +  + + +
Sbjct: 54  EPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA 91

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.2 bits (93), Expect = 2e-05
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKN 173
            P I    P++       +  L C A G+P P I+W K 
Sbjct: 4   APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKL 42

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 34.8 bits (79), Expect = 0.002
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 3  TEVKKSDEGKYQCYVQNMVGERETKPALLTVHA 35
            V   DEG Y+C  +N+ G    +   + +HA
Sbjct: 60 QNVDFEDEGTYECEAENIKGRDTYQ-GRIIIHA 91

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 59.1 bits (142), Expect = 3e-12
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 6/94 (6%)

Query: 37  PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTL 96
           P ++    D +  +     + CVA G P P+V W +           A  +      G L
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLR------DGQPLASQNRIEVSGGEL 55

Query: 97  RIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS 130
           R   +  ED+G + C A +  G+    A L V +
Sbjct: 56  RFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 7e-12
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 2/90 (2%)

Query: 39  FVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRI 98
            + +P+   V     A F C  +G P+P+V W ++G  +     +           T  I
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKS--TFEI 59

Query: 99  QGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
             VQ  D G +     +  G       L +
Sbjct: 60  SSVQASDEGNYSVVVENSEGKQEAEFTLTI 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 33.7 bits (76), Expect = 0.004
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 1  MITEVKKSDEGKYQCYVQNMVGERETKPALLTV 33
           I+ V+ SDEG Y   V+N  G++E +   LT+
Sbjct: 58 EISSVQASDEGNYSVVVENSEGKQEAE-FTLTI 89

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 2e-11
 Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 11/108 (10%)

Query: 32  TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWT-----------QEGSQVLMF 80
           + H P      P +    + G   F C       P + W             +G   L  
Sbjct: 1   SRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKV 60

Query: 81  PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
              A  +    +   L I+ V  EDAG + C A +  G +   A+L V
Sbjct: 61  LKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 3e-07
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 136 PPIVQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE 180
            PI+Q G P+N +  +       C+      PHI+W K+      +
Sbjct: 4   RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSK 49

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 2e-11
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 5/96 (5%)

Query: 37  PSFV----VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
           P +     +  +   V       F+C A G+P+P++ W +   +         G+    Q
Sbjct: 2   PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRIGGYKVRNQ 60

Query: 93  EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
             +L ++ V   D G + C   +  GS      L V
Sbjct: 61  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 2e-05
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 134 TPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED 181
           T    ++       +P  +     C A G+P P +RW KNG     E 
Sbjct: 5   TNTEKME--KRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEH 50

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 5e-04
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 202 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID 241
           + E +   V +  T    C P  G P PT+ W KNG+   
Sbjct: 9   KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGKEFK 47

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 4e-11
 Identities = 23/113 (20%), Positives = 36/113 (31%), Gaps = 7/113 (6%)

Query: 31  LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV 90
           LTV+ PP  +   Q Q          +C    +P P          VL    +    +  
Sbjct: 2   LTVNGPP-IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVET 60

Query: 91  TQEG-----TLRIQGVQKE-DAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
                    TL I  + +      + C+A +  GS T    L+    E + P 
Sbjct: 61  ISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPS 113

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.5 bits (130), Expect = 2e-10
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 37  PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTL 96
             F   P  Q+      A   C    S  P++ W  +G  V++     +  L        
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL--- 58

Query: 97  RIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
           +I+G++K D G + C    +A        +QV 
Sbjct: 59  QIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 91

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.3 bits (80), Expect = 0.001
 Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 238
           F+  P       GE A++ C        PT+ WK  G+
Sbjct: 4   FKNAPTPQEFKEGEDAVIVC-DVVSSLPPTIIWKHKGR 40

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 11/33 (33%), Positives = 13/33 (39%)

Query: 143 PSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGN 175
           P+ Q       A + C  V S PP I W   G 
Sbjct: 8   PTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGR 40

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 53.1 bits (126), Expect = 6e-10
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 3/95 (3%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
            P    +P +     N     +C+ EG+     +  ++  +   +    +       EG+
Sbjct: 2   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGK--SYNWQEHNAALRKDEGS 59

Query: 96  LRIQGVQKEDAGFFVCSALSVAGSTTVR-AFLQVT 129
           L     Q  D G + C A + AG  + R    + T
Sbjct: 60  LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKT 94

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 7e-10
 Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 10/110 (9%)

Query: 39  FVVRPQDQKVGLNGIASFQCVAEGSPL---PSVFWTQEGSQVL-------MFPGNAYGHL 88
           F+ +PQ   V +    +F    +   L   P++ W +     L       +     +   
Sbjct: 3   FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 62

Query: 89  HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPI 138
                  ++I   +   AG + C         +    L+V     T P I
Sbjct: 63  SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNI 112

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 8e-10
 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 1/88 (1%)

Query: 43  PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ 102
           P    V         C  EG   P + W ++G+ V                G L ++ V+
Sbjct: 3   PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 62

Query: 103 KEDAGFFVCSALSVAGS-TTVRAFLQVT 129
           + DAG + C       +  +   +L V 
Sbjct: 63  RSDAGRYWCQVEDGGETEISQPVWLTVE 90

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-05
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 2  ITEVKKSDEGKYQCYVQNMVGERETKPALLTV 33
          +  V++SD G+Y C V++      ++P  LTV
Sbjct: 58 LKSVERSDAGRYWCQVEDGGETEISQPVWLTV 89

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (77), Expect = 0.003
 Identities = 9/31 (29%), Positives = 12/31 (38%)

Query: 143 PSNQTLPLHSVAFLPCQAVGSPPPHIRWYKN 173
           P   T+       L C   G   P I+W K+
Sbjct: 3   PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKD 33

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 8e-10
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 6/103 (5%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQC-VAEGSPLPSVFWTQEGSQVLMFPG-----NAYGHLH 89
           PPS           +   A   C   +GSP     W ++G  +   P      +   ++ 
Sbjct: 2   PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 61

Query: 90  VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVE 132
               G L    +   D G + C A +  G+      +++ +VE
Sbjct: 62  NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE 104

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 10/56 (17%), Positives = 18/56 (32%)

Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGS 191
           PP         +  + + A L C      PP    +     + P + +   + S S
Sbjct: 2   PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNS 57

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (77), Expect = 0.004
 Identities = 13/79 (16%), Positives = 25/79 (31%)

Query: 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSI 264
              +    G  A+L C    G P     W K+G  +        +     +  +  +  +
Sbjct: 9   NIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGEL 68

Query: 265 FGSVLGALSDDQWKLIAKN 283
               L A    ++   A+N
Sbjct: 69  VFDPLSASDTGEYSCEARN 87

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 1e-09
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 3/95 (3%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG- 94
            P F+ R Q+ +V     A+FQC A G  +       +G  V   P          +   
Sbjct: 2   TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA 60

Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTVR-AFLQV 128
           +  +    K DAG + C   +  G      A L V
Sbjct: 61  SFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 3e-04
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 2  ITEVKKSDEGKYQCYVQNMVGERETKPALLTV 33
          +    K D GKY+C ++   G   +  A L V
Sbjct: 64 VVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.2 bits (124), Expect = 2e-09
 Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 7/96 (7%)

Query: 36  PPSFVVRPQDQKV---GLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
            P F  +P              +  C A  +P  +  W   G+++ M P +      +  
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDS---RYRLVA 60

Query: 93  EGTLRIQGVQKEDAGFFVCSALSVAGS-TTVRAFLQ 127
              +    V+ +DAG + C A +  G+  +  A L+
Sbjct: 61  GDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR 96

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.2 bits (85), Expect = 3e-04
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 136 PPIVQVGPSNQTLPLHSV---AFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSL 192
            P+ +  P++   P  S      L C+A  +PP   RW  NG  L           +G L
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63

Query: 193 QI 194
            I
Sbjct: 64  VI 65

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 6e-09
 Identities = 24/104 (23%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPL---PSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
              FV+RPQD +V + G  +F     G+ L   P V W +     L      +  LH + 
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 93  -------EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
                     L I   Q    G + C   +          L V 
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH 107

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 8e-09
 Identities = 20/109 (18%), Positives = 33/109 (30%), Gaps = 8/109 (7%)

Query: 32  TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVL--MFPGNAYGHLH 89
           TV+ PP  V   + +          + V  G+P P++ W   G  +         Y    
Sbjct: 1   TVYYPPRVVSLEEPELRLE---HCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG 57

Query: 90  VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPI 138
              EG L        + G +   A +  G+               P P+
Sbjct: 58  EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL---KEPFPV 103

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 1e-08
 Identities = 16/109 (14%), Positives = 30/109 (27%), Gaps = 10/109 (9%)

Query: 33  VHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFP---GNAYGHLH 89
           VH  P+                      +G+P P++ W   G+ +          +   H
Sbjct: 1   VHFAPTITFLESPTSDHH---WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57

Query: 90  VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPI 138
               G L++      + G +   A +  G    +            P I
Sbjct: 58  TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG----WPGI 102

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.2 bits (116), Expect = 2e-08
 Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 7/104 (6%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQC-VAEGSPLPSVFWTQEGSQVL------MFPGNAYGHL 88
           PPS         V +   A   C   +GSP     W ++G  +L                
Sbjct: 2   PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 61

Query: 89  HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVE 132
              + G L    V   D+G + C A +  G+        + +VE
Sbjct: 62  IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 105

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (83), Expect = 6e-04
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPPEDTRINVSSSGS 191
           PP         ++ + + A L C    GSPP    W+K+G S+   D +   +   S
Sbjct: 2   PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNS 58

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.0 bits (113), Expect = 3e-08
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 9/95 (9%)

Query: 36  PPS-FVVRPQDQKVGLNGIASFQCVAE-GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE 93
           P    V   + Q V      +F C A+  SP  ++ WT+  +  L           +   
Sbjct: 1   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP-------SRAMDFN 53

Query: 94  GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
           G L I+ VQ  DAG +VC+  ++       A L V
Sbjct: 54  GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 88

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.6 bits (78), Expect = 0.002
 Identities = 8/41 (19%), Positives = 10/41 (24%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID 241
              E +   V  G      C      P  TL W +      
Sbjct: 5   TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL 45

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.2 bits (77), Expect = 0.003
 Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 4/61 (6%)

Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQ 193
           P  +      +Q++   +     C A   SP   + W +  N   P          G L 
Sbjct: 1   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFN---GILT 57

Query: 194 I 194
           I
Sbjct: 58  I 58

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 3e-08
 Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 6/99 (6%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG-----SQVLMFPGNAYGHLHV 90
           PP        + +     A   C +E  P  + +   +        ++    + +     
Sbjct: 2   PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 61

Query: 91  TQEGTLRIQGVQKED-AGFFVCSALSVAGSTTVRAFLQV 128
                L I+ +  E   G + C+  S  GS      L+V
Sbjct: 62  QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 9e-08
 Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 13/99 (13%)

Query: 46  QKVGLNGIASFQC------VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQ 99
           QK+ + G     C        E + LP + W ++       P           +  L + 
Sbjct: 9   QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCK-----PLLLDNIHFSGVKDRLIVM 63

Query: 100 GVQKEDAGFFVCSALSVAGST--TVRAFLQVTSVEDTPP 136
            V ++  G + C A          +   ++  ++E+  P
Sbjct: 64  NVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKP 102

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 8e-04
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 7/65 (10%)

Query: 146 QTLPLHSVAFLPCQAV------GSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRD 199
           Q LP+     L C  +       +  P ++WYK+   L  ++          L +  + +
Sbjct: 9   QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHF-SGVKDRLIVMNVAE 67

Query: 200 DFRAE 204
             R  
Sbjct: 68  KHRGN 72

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 2e-07
 Identities = 17/103 (16%), Positives = 28/103 (27%), Gaps = 8/103 (7%)

Query: 43  PQDQKVGLNGIASFQC---VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLH-----VTQEG 94
           P   ++         C     +G P PS+ W   GS +          L        + G
Sbjct: 4   PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63

Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
            LR+      + G +   A +  G  +               P
Sbjct: 64  CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNP 106

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 0.003
 Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 2/44 (4%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQ 44
            + +    + G Y     N  G+      +      P F   P+
Sbjct: 66  RLNQPTHVNNGNYTLLAANPFGQASAS-IMAAFMDNP-FEFNPE 107

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 46.1 bits (108), Expect = 2e-07
 Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 3/94 (3%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
            P +V   +D       +    C+   +P+    + + G  V   P +     + T    
Sbjct: 5   VPQYV--SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 62

Query: 96  LRIQGVQKEDAGFFVCSALSVAGS-TTVRAFLQV 128
           L  +    ED G + C   +  G        L V
Sbjct: 63  LLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 96

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 34.1 bits (77), Expect = 0.003
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 4/74 (5%)

Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP----EDTRINVSSSG 190
             P+ Q    +       V  + C    +P  +  ++KNG  +        TR N +S  
Sbjct: 2   GEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGK 61

Query: 191 SLQIDVLRDDFRAE 204
            L       +    
Sbjct: 62  RLLFKTTLPEDEGV 75

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 3e-07
 Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 5/102 (4%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSP-LPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
              ++ R  +  +        +C  +     P V W +      +   +        +  
Sbjct: 3   VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNI 62

Query: 95  TL---RIQGVQKEDAGFFVCSALSVAGSTTVRAF-LQVTSVE 132
           +      + V   D G + CSA   +      +  L VT V+
Sbjct: 63  SFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTDVK 104

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 5e-07
 Identities = 14/110 (12%), Positives = 32/110 (29%), Gaps = 9/110 (8%)

Query: 36  PPSFV-VRPQDQKVGLNGIASFQCVAEGS---PLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
           PP  V +  Q   V +    + +C           ++F  +    +              
Sbjct: 1   PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQE 60

Query: 92  QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQV 141
              T      +++    F C A+    S     F +      + P ++++
Sbjct: 61  ATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKH-----SAPKMLEI 105

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 1e-04
 Identities = 6/53 (11%), Positives = 15/53 (28%), Gaps = 3/53 (5%)

Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGS---PPPHIRWYKNGNSLPPEDTRI 184
           PP  V +      + +     + C+           +  ++   +L  E    
Sbjct: 1   PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGK 53

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.0 bits (105), Expect = 5e-07
 Identities = 12/93 (12%), Positives = 28/93 (30%), Gaps = 2/93 (2%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
            P  +   +  K+      + +    G+P P+  WT   S               +   +
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSG--AALAPELLVDAKSSTTS 59

Query: 96  LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
           +     ++ D+G +     +  G       + V
Sbjct: 60  IFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 9e-07
 Identities = 13/98 (13%), Positives = 23/98 (23%), Gaps = 5/98 (5%)

Query: 31  LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV 90
           L     P+  V             +  C        +                ++     
Sbjct: 1   LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLR----KPAAGSHPSRWA 56

Query: 91  TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
                L ++ VQ  D+G + C         TV   + V
Sbjct: 57  GMGRRLLLRSVQLHDSGNYSCYRAGRPAG-TVHLLVDV 93

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 1e-06
 Identities = 20/125 (16%), Positives = 33/125 (26%), Gaps = 32/125 (25%)

Query: 36  PPSFVV-----RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVL------------ 78
           PP   +      P    V             G P P+V W +  +Q              
Sbjct: 4   PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 63

Query: 79  ------------MFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSALSVAGSTTVR 123
                              G + V          ++G +KED G +  +  +  G   V 
Sbjct: 64  DTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVN 123

Query: 124 AFLQV 128
             ++V
Sbjct: 124 LTVKV 128

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVH 34
            +   +K DEG Y   V+N VGE +     + V 
Sbjct: 97  TVEGAEKEDEGVYTVTVKNPVGEDQVN-LTVKVI 129

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 1e-06
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 1/84 (1%)

Query: 39  FVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRI 98
              + +D           +C        +V W + G +++  P + Y      ++  L I
Sbjct: 3   VTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILII 61

Query: 99  QGVQKEDAGFFVCSALSVAGSTTV 122
           +G  K DA  +         S  +
Sbjct: 62  EGATKADAAEYSVMTTGGQSSAKL 85

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 3e-06
 Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 3/88 (3%)

Query: 36  PPSFVVRPQD-QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
             +F  + +   +V                   V W + G ++    G+ Y    +  + 
Sbjct: 5   STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEI-QMSGSKYIFESIGAKR 62

Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTV 122
           TL I      D   + C       ST +
Sbjct: 63  TLTISQCSLADDAAYQCVVGGEKCSTEL 90

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 3e-06
 Identities = 13/107 (12%), Positives = 27/107 (25%), Gaps = 9/107 (8%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
           P    + P      +    + +C  EG  P   +       +  +        +    E 
Sbjct: 4   PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP---AVGEPAEV 60

Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQV 141
           T  +   +      F C          +  F   ++     P  +Q 
Sbjct: 61  TTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSA-----PYQLQT 102

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.002
 Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 3/58 (5%)

Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPP---PHIRWYKNGNSLPPEDTRINVSSS 189
            P  V++ P     P+     L CQ  G  P     +   +    L  E      +  
Sbjct: 3   TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEV 60

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 9e-06
 Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 11/94 (11%)

Query: 43  PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLM--------FPGNAYGHLHVTQEG 94
            Q     + G  +F       PL  V W ++  +V          F          T  G
Sbjct: 2   SQQIYGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60

Query: 95  TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
           +L I  +   D   +   + ++  +  ++ FL V
Sbjct: 61  SLTIYNLTSSDEDEYEMESPNITDT--MKFFLYV 92

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.6 bits (96), Expect = 1e-05
 Identities = 14/98 (14%), Positives = 26/98 (26%)

Query: 32  TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
           +V+   S V  P+++ + L    S               T             Y      
Sbjct: 3   SVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF 62

Query: 92  QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
               +    V ++D G + C      G       + +T
Sbjct: 63  SSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (96), Expect = 1e-05
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 1   MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQ 44
            I  V+ SDEG Y C+ ++   + E     L V  P  ++   +
Sbjct: 84  RIQNVRFSDEGGYTCFFRDHSYQEEAA-VELKVEDPFYWINPGR 126

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 17/77 (22%), Positives = 24/77 (31%), Gaps = 8/77 (10%)

Query: 70  WTQEGSQVLMFPGNAYGHLHVTQEG--TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 127
             Q+  Q   + G          EG   LRIQ V+  D G + C     +        L+
Sbjct: 55  KDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELK 114

Query: 128 VTSVEDTPPPIVQVGPS 144
           V        P   + P 
Sbjct: 115 VED------PFYWINPG 125

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 2e-05
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 135 PPPIVQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWYKN 173
            P + +   P N T P +S     CQA G+P P ++  K+
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKD 41

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 1e-04
 Identities = 19/97 (19%), Positives = 28/97 (28%), Gaps = 17/97 (17%)

Query: 36  PPSFVVR--PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE 93
            P    R  P +     N   +  C A G+PLP +                         
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCL---------------KDGTFPL 46

Query: 94  GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS 130
                  V ++  G ++C A S  G  T    + V S
Sbjct: 47  PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 83

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 3e-05
 Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 5/80 (6%)

Query: 55  SFQCVAEGSPLPSVFWTQEGSQVLMFPGNA-----YGHLHVTQEGTLRIQGVQKEDAGFF 109
           +         +  V W +  + V  F          G   +   G L+I+ + ++D+G +
Sbjct: 16  NIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTY 75

Query: 110 VCSALSVAGSTTVRAFLQVT 129
             +  S  G+  +   L + 
Sbjct: 76  NVTVYSTNGTRILNKALDLR 95

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 4e-05
 Identities = 15/104 (14%), Positives = 24/104 (23%), Gaps = 11/104 (10%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ--- 92
           P       +  +V L       C   G      +W   GS +           +  +   
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 93  -------EGTLRIQGVQKEDAGF-FVCSALSVAGSTTVRAFLQV 128
                     L I  ++       F C A +  G       L  
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 4e-05
 Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 8/93 (8%)

Query: 40  VVRP-QDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRI 98
           V +P    +V +   A F+      P     W  +     +        +   ++  L +
Sbjct: 4   VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLK--GQPLTASPDCEIIEDGKKHILIL 60

Query: 99  QGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSV 131
              Q    G         A +    A L+V  +
Sbjct: 61  HNCQLGMTGEVSF----QAANAKSAANLKVKEL 89

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 1e-04
 Identities = 13/105 (12%), Positives = 32/105 (30%), Gaps = 11/105 (10%)

Query: 32  TVHAPPSFVVRPQDQKVGLNGIASFQC-VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV 90
                   +V   ++      I    C +       ++ W ++ S+              
Sbjct: 4   KEREEKIILVSSANE------IDVRPCPLNPNEHKGTITWYKDDSK--TPVSTEQASRIH 55

Query: 91  TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTP 135
             +  L     + ED+G + C   + +    ++   +   VE+ P
Sbjct: 56  QHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKF--VENEP 98

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 3e-04
 Identities = 9/82 (10%), Positives = 24/82 (29%), Gaps = 7/82 (8%)

Query: 202 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRS 261
           R E      ++ E  +  C     + + T+ W K+     + + +   I           
Sbjct: 6   REEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE------ 59

Query: 262 RSIFGSVLGALSDDQWKLIAKN 283
             ++           +  + +N
Sbjct: 60  -KLWFVPAKVEDSGHYYCVVRN 80

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 2e-04
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 12/105 (11%)

Query: 31  LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLM------FPGNA 84
           +TVH+    V  P++  V         C   G   P V W  +                +
Sbjct: 5   VTVHSSEPEVRIPENNPV------KLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITAS 58

Query: 85  YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
           Y          +  + V +ED G + C      G++     +++ 
Sbjct: 59  YEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 2e-04
 Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 3/94 (3%)

Query: 36  PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
            P+  V+  +  V +      +C  EG  L    W     +       + G   +     
Sbjct: 2   VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLT-- 59

Query: 96  LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
                    +     C A +  G   V   + V+
Sbjct: 60  -LANVTSDLNRKNVTCWAENDVGRAEVSVQVNVS 92

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (79), Expect = 0.002
 Identities = 10/59 (16%), Positives = 17/59 (28%)

Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI 194
            P ++V   N ++ +     L CQ  G       W            +     S  L +
Sbjct: 2   VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 60

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 3e-04
 Identities = 16/94 (17%), Positives = 26/94 (27%), Gaps = 13/94 (13%)

Query: 37  PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTL 96
           P   + P   ++      +  C        S         +                 +L
Sbjct: 2   PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE-----------TNSSL 50

Query: 97  RIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS 130
            I   + ED+G + C    V  S  V   L+V S
Sbjct: 51  NIVNAKFEDSGEYKCQHQQVNESEPVY--LEVFS 82

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 9e-04
 Identities = 9/63 (14%), Positives = 18/63 (28%)

Query: 69  FWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
                G   +           +T   ++ I  ++  D G + C  L        R  L  
Sbjct: 40  LTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAE 99

Query: 129 TSV 131
            ++
Sbjct: 100 VTL 102

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.001
 Identities = 12/58 (20%), Positives = 16/58 (27%)

Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDS 258
           F  EPKD  V       L C         T+ W +    I   +     +       S
Sbjct: 4   FTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQS 61

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (76), Expect = 0.004
 Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 13/94 (13%)

Query: 37  PSFVVRPQDQKVGLNGIASFQCVAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
           P F V P+D  V  N      C A G     ++ W +  +++     +            
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVL-------- 53

Query: 96  LRIQGVQKEDAGFFVCSALSVAGSTTVR-AFLQV 128
                     +  F C A ++ G  + R A + +
Sbjct: 54  ---NVTGVTQSTMFSCEAHNLKGLASSRTATVHL 84

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 15/105 (14%), Positives = 26/105 (24%), Gaps = 12/105 (11%)

Query: 25  ETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNA 84
           E    LL VH  P  +        G       +                 S +       
Sbjct: 13  EDNNVLLLVHNLPLAL-GAFAWYKGNTTAIDKEIARF----------VPNSNMNFTGQAY 61

Query: 85  YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
            G   +   G+L  Q +  +D G +             +A ++  
Sbjct: 62  SGREIIYSNGSLLFQMITMKDMGVYTLDMTD-ENYRRTQATVRFH 105

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 34.2 bits (77), Expect = 0.003
 Identities = 20/98 (20%), Positives = 26/98 (26%), Gaps = 15/98 (15%)

Query: 35  APPSFVV--RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
           APP  V+   PQ   V      +  C    SP                      +L  T 
Sbjct: 1   APPKAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNG-----------NLIPTH 49

Query: 93  EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS 130
                       D+G + C     + S  V   L V S
Sbjct: 50  TQPSYRFKANNNDSGEYTCQTGQTSLSDPVH--LTVLS 85

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.2 bits (77), Expect = 0.003
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 1  MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
           I  +K+ D G+YQC + N V  R +    L +   PS
Sbjct: 59 RIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPS 96

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 33.7 bits (76), Expect = 0.004
 Identities = 11/36 (30%), Positives = 14/36 (38%)

Query: 1  MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAP 36
           I +   S  G Y C          +KP  +TV AP
Sbjct: 52 SIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAP 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	292
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.71
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.69
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.68
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.67
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.67
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.67
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.66
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.66
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.66
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.66
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.66
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.66
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.65
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.65
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.64
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.64
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.64
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.63
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.62
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.61
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.61
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.61
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.61
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.6
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.6
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.6
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.59
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.59
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.59
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.59
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.58
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.58
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.57
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.57
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.57
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.56
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.56
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.56
d2avga1	110	Cardiac myosin binding protein C, different domain	99.56
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.56
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.56
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.56
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.56
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.55
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.55
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.55
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.55
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.55
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.54
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.54
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.54
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.53
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.53
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.52
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.52
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.51
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.51
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.51
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.51
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.51
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.51
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.51
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.5
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.5
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.5
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.49
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.49
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.49
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.49
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.48
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.48
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.48
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.48
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.47
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.47
d2avga1	110	Cardiac myosin binding protein C, different domain	99.46
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.46
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.46
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.46
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.44
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.44
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.44
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.44
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.44
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.44
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.43
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.43
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.41
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.41
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.41
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.41
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.4
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.4
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.39
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.39
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.38
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.38
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.37
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.37
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.37
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.37
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.37
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.35
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.35
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.35
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.34
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.34
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.33
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.32
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.32
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.27
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.26
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.25
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.22
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.18
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.11
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.08
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.06
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.95
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.9
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.78
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.76
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.75
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.75
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.75
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.72
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.69
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.68
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.66
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.65
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.64
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.61
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.61
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.61
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.6
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.6
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.59
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.57
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.57
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.56
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.55
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.54
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.53
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.52
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.52
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.52
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.51
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.51
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.5
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.5
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.5
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.5
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.47
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.47
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.47
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.47
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.46
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.46
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.45
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.45
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.44
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.44
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.44
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.44
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.43
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.43
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.43
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.42
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.42
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.42
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.41
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.41
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.4
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.4
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.39
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.39
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.39
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.38
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.38
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.37
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.37
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.37
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.37
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.37
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.36
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.35
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.35
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.34
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.34
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.34
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.33
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.32
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.32
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.32
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.31
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.31
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.31
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	98.3
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.3
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.29
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.28
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.28
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.28
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.28
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.28
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.27
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.26
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.26
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.26
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.26
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.26
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.26
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.26
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.25
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.25
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.25
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.25
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.25
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.24
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.24
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.23
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.23
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.23
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.23
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.23
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.23
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	98.22
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.22
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.22
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.22
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.22
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	98.22
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.22
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.22
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.22
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.21
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.21
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.2
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.2
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.2
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.2
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.19
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.19
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.19
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.18
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.18
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.17
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.17
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.16
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.16
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.16
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	98.16
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.16
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.16
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.15
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.15
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.15
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	98.15
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.14
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.14
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.13
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.13
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.13
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.13
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.13
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	98.12
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.12
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	98.12
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.11
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.11
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	98.11
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	98.11
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.11
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.1
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.1
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.09
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.09
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.09
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.09
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.09
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	98.08
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.07
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.07
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.07
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.07
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	98.07
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.06
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.06
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.06
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.05
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.05
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	98.05
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	98.05
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.05
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	98.04
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.04
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.03
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.03
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.03
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.01
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.01
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.0
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.0
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.0
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.99
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.99
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.98
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.98
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.97
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.96
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.96
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.96
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.95
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.95
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.95
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.95
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.95
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.94
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.94
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.94
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.94
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.94
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.94
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.94
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.93
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.93
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.92
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.92
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.92
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.92
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.92
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.92
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.92
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.92
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.91
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.91
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.91
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.91
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.91
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.9
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.9
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.9
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.89
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.89
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.89
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.89
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.89
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.88
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.88
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.88
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.87
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.87
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.87
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.87
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.87
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.87
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.86
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.86
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.85
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.85
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.85
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.85
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.85
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.84
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.84
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.84
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.84
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.84
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.84
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.84
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.84
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.83
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.83
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.82
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.81
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.81
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.81
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.81
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.81
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.8
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.8
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.8
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.8
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.79
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.79
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.79
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.79
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.79
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.78
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.78
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.78
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.78
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.78
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.78
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.78
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.77
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.77
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.77
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.77
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.77
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.76
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.76
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.76
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.76
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.76
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.76
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.75
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.75
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.75
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.74
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.74
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.74
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.73
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.73
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.73
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.72
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.72
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.71
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.7
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	97.7
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.7
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.69
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.68
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.68
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	97.68
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.68
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.68
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.68
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.67
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.67
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.67
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.67
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.66
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.65
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.65
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.64
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.63
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.63
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.62
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.62
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.62
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.62
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.62
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.62
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.62
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.61
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.61
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.59
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.59
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.58
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.58
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.57
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.57
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.57
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.56
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.55
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.53
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.52
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.52
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.52
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.52
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.52
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.52
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.51
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.51
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.48
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.48
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.47
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.46
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.46
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.46
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.45
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.45
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.45
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.43
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.43
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.41
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.4
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.4
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	97.4
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.4
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.39
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.39
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.39
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.38
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.38
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.38
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.37
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.36
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.35
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.35
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.35
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.34
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.34
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.33
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.32
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.31
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.3

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.71  E-value=1.2e-16  Score=98.15  Aligned_cols=87  Identities=26%  Similarity=0.510  Sum_probs=72.9

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeC
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                      |.+...+.+..+..|+++.|.|.+.|.|.|.+.|++++..+..     ..+.. ...+.|.|.++..+|.|.|+|.+.|.
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~-----~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~   75 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLAS-----QNRIE-VSGGELRFSKLVLEDSGMYQCVAENK   75 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCC-----CSSEE-EETTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccc-----cceee-eeeeeEEEEeecccCCEEEEEEEEeC
Confidence            6677888889999999999999999999999999999987631     12222 23568999999999999999999999


Q ss_pred             CcCeeEEEEEEEE
Q psy15128        117 AGSTTVRAFLQVT  129 (292)
Q Consensus       117 ~~~~~~~~~l~v~  129 (292)
                      .|.......|.|.
T Consensus        76 ~G~~~~~~~l~V~   88 (89)
T d1cs6a4          76 HGTVYASAELTVQ   88 (89)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEE
Confidence            9987777777764

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.69  E-value=2e-17  Score=101.65  Aligned_cols=74  Identities=23%  Similarity=0.391  Sum_probs=62.6

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +.+..+..|+.+.|.|.+ .|.|.|.+.|++||.+|.  .+.++.+...         .|.|..+..+|+|.|+|.|.|.
T Consensus         8 ~~~~~v~~G~~~~l~C~~-~g~P~p~v~W~k~g~~i~--~~~~~~~~~~---------~L~i~~v~~~D~G~Y~C~a~N~   75 (89)
T d1cs6a4           8 ITDTEADIGSDLRWSCVA-SGKPRPAVRWLRDGQPLA--SQNRIEVSGG---------ELRFSKLVLEDSGMYQCVAENK   75 (89)
T ss_dssp             CCCEEEETTCCEEEECEE-EEESCCEEEEEETTEECC--CCSSEEEETT---------EEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEECCCCcEEEEEEE-EEEcCCEEEEEEeecccc--ccceeeeeee---------eEEEEeecccCCEEEEEEEEeC
Confidence            457789999999999998 899999999999999986  3445544332         5889999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      .|+++.
T Consensus        76 ~G~~~~   81 (89)
T d1cs6a4          76 HGTVYA   81 (89)
T ss_dssp             TEEEEE
T ss_pred             CCEEEE
Confidence            998764

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.68  E-value=1.6e-16  Score=99.58  Aligned_cols=92  Identities=27%  Similarity=0.412  Sum_probs=74.2

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeC
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                      |.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+...  .............|.|.++..+|+|.|+|.|.|.
T Consensus         2 P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   79 (97)
T d1koaa1           2 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS--VKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNS   79 (97)
T ss_dssp             CEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSB--TTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEET
T ss_pred             CEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeecccee--eEEEEEecCCeeEEEeCCCceecCEEEEEEEEEC
Confidence            77888888899999999999999999999999999999876422  2222122223447999999999999999999999


Q ss_pred             CcCeeEEEEEEEEe
Q psy15128        117 AGSTTVRAFLQVTS  130 (292)
Q Consensus       117 ~~~~~~~~~l~v~~  130 (292)
                      .|.....+.|.|..
T Consensus        80 ~G~~~~~~~l~V~~   93 (97)
T d1koaa1          80 YGTKEEIVFLNVTR   93 (97)
T ss_dssp             TEEEEEEECCEEEC
T ss_pred             CCEEEEEEEEEEee
Confidence            99888777777753

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=2.4e-16  Score=99.42  Aligned_cols=94  Identities=27%  Similarity=0.456  Sum_probs=70.5

Q ss_pred             CCcEEeCCCcc--EEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEE
Q psy15128         36 PPSFVVRPQDQ--KVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA  113 (292)
Q Consensus        36 ~p~~~~~~~~~--~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~  113 (292)
                      ||.+...+...  .+..|+++.|.|.+.|.|.|.+.|++++..+................+.|.|.+++.+|+|.|+|.+
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA   82 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEE
Confidence            45555444433  4467999999999999999999999999877533322222222334568999999999999999999


Q ss_pred             EeCCcCeeEEEEEEEE
Q psy15128        114 LSVAGSTTVRAFLQVT  129 (292)
Q Consensus       114 ~~~~~~~~~~~~l~v~  129 (292)
                      .|..|.....+.|.|.
T Consensus        83 ~N~~G~~~~~~~l~V~   98 (100)
T d1qz1a3          83 ENKAGEQDASIHLKVF   98 (100)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EECCCEEEEEEEEEEE
Confidence            9999988877777765

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.4e-16  Score=98.75  Aligned_cols=92  Identities=18%  Similarity=0.233  Sum_probs=72.4

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeC
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                      |.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+..  ..............|.|.++..+|+|.|+|.+.|.
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   78 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQE--SEHMKVENSENGSKLTILAARQEHCGCYTLLVENK   78 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCC--SSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECS
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeecc--CCcEEEEEecceeEEEEeeCCcccCEEEEEEEEEC
Confidence            4455667788899999999999999999999999999987632  12221122223347999999999999999999999


Q ss_pred             CcCeeEEEEEEEEe
Q psy15128        117 AGSTTVRAFLQVTS  130 (292)
Q Consensus       117 ~~~~~~~~~l~v~~  130 (292)
                      .|.....+.|.|.+
T Consensus        79 ~G~~~~~~~l~V~~   92 (101)
T d2cqva1          79 LGSRQAQVNLTVVD   92 (101)
T ss_dssp             SCEEECCEEEEEEC
T ss_pred             CCEEEEEEEEEEEe
Confidence            99888888887765

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.4e-17  Score=99.93  Aligned_cols=80  Identities=14%  Similarity=0.257  Sum_probs=63.7

Q ss_pred             CCCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128        203 AEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK  282 (292)
Q Consensus       203 g~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~  282 (292)
                      |.|.+..+.+|+.+.|.|.+ .+.|.+.+.|+++|..+.......+......     ....|.|..+..+|+|.|+|.|+
T Consensus         1 g~P~~~~v~~G~~~~l~C~v-~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~   74 (91)
T d1rhfa1           1 GAPVKLTVSQGQPVKLNCSV-EGMEEPDIQWVKDGAVVQNLDQLYIPVSEQH-----WIGFLSLKSVERSDAGRYWCQVE   74 (91)
T ss_dssp             CCCEEEEEETTCCEEEEEEE-ESCSSCCEEEEETTEECCSSEEEEEEEETTE-----EEEEEEESSCCGGGCEEEEEEES
T ss_pred             CcCeeEEEcCCCeEEEEEEE-EecCCceEEEEEeecccccceeeeeeecccC-----ceeeEEECCCCcccCEEEEEEEE
Confidence            35778899999999999998 8999999999999999863332233332221     22358899999999999999999


Q ss_pred             eccccc
Q psy15128        283 NIRNQQ  288 (292)
Q Consensus       283 n~~g~~  288 (292)
                      |..|..
T Consensus        75 N~~G~~   80 (91)
T d1rhfa1          75 DGGETE   80 (91)
T ss_dssp             SCTTCE
T ss_pred             ECCCCE
Confidence            999975

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.67  E-value=5.5e-16  Score=97.27  Aligned_cols=92  Identities=28%  Similarity=0.399  Sum_probs=73.7

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEE-eeecEEEEccCCCCCCeEEEEEEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV-TQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      +|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..  ......... .....|.|.++..+|.|.|+|.+.
T Consensus         4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   81 (98)
T d1g1ca_           4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIER--SDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAI   81 (98)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCC--CSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEee--eeeeEEEeccceEEEEEeccCccccCEEEEEEEE
Confidence            56777888889999999999999999999999999999987742  111111111 123479999999999999999999


Q ss_pred             eCCcCeeEEEEEEEE
Q psy15128        115 SVAGSTTVRAFLQVT  129 (292)
Q Consensus       115 ~~~~~~~~~~~l~v~  129 (292)
                      |..|.....+.|.|.
T Consensus        82 N~~G~~~~~~~L~V~   96 (98)
T d1g1ca_          82 NIAGETSSHAFLLVQ   96 (98)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             ECCcEEEEEEEEEEE
Confidence            999988888888775

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.66  E-value=7.3e-16  Score=94.64  Aligned_cols=86  Identities=24%  Similarity=0.525  Sum_probs=68.5

Q ss_pred             CCcEEeCCCc-cEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         36 PPSFVVRPQD-QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        36 ~p~~~~~~~~-~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      +|.+...+.. ..+.+|+++.|.|.+.|.|.|.+.|++++..+.      ..+.. ..+..|.|.++...|+|.|+|.+.
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~------~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~   74 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLS------GGRAT-VTDSGLVIKGVKNGDKGYYGCRAT   74 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECC------SSSEE-EETTEEEESSCCSTTCEEEEEEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCc------cccEE-EeeeeEEECCCChhhCEEEEEEEE
Confidence            4566666544 567889999999999999999999999998762      11222 235579999999999999999999


Q ss_pred             eCCcCeeEEEEEEE
Q psy15128        115 SVAGSTTVRAFLQV  128 (292)
Q Consensus       115 ~~~~~~~~~~~l~v  128 (292)
                      |..|.....+.|.|
T Consensus        75 N~~G~~~~~~~l~V   88 (89)
T d1biha4          75 NEHGDKYFETLVQV   88 (89)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEEE
Confidence            99998777766655

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.66  E-value=3.5e-17  Score=101.29  Aligned_cols=78  Identities=23%  Similarity=0.476  Sum_probs=63.9

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      |.+..+.+|+.+.|.|.+ .|.|.|.+.|+++|.++......++.....       ...|.|..+...|+|.|+|.|+|.
T Consensus         6 P~~~~v~~G~~~~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~-------~~~L~i~~v~~~D~G~Y~C~a~N~   77 (91)
T d1tnna_           6 PRSMTVYEGESARFSCDT-DGEPVPTVTWLRKGQVLSTSARHQVTTTKY-------KSTFEISSVQASDEGNYSVVVENS   77 (91)
T ss_dssp             CCCEECSSSSCCCEEEEC-CCSSCCCCEEESSSSTTCSSSSCEEEECSS-------EEEEECSSCCSCCCEEEEEECBCS
T ss_pred             CcCEEEeCCCcEEEEEEE-EEEeCCeEEEEEeecccccccceeeeeecc-------eeEEeecCCCHHHCEEEEEEEEEC
Confidence            567889999999999998 899999999999999886444333333222       236889999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      .|+++.
T Consensus        78 ~G~~~~   83 (91)
T d1tnna_          78 EGKQEA   83 (91)
T ss_dssp             SCBCCE
T ss_pred             CCEEEE
Confidence            998764

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.66  E-value=2e-16  Score=98.24  Aligned_cols=91  Identities=13%  Similarity=0.157  Sum_probs=72.8

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      +|.+...+....+.+|+++.|.|.+.|.|.|.+.|++++..+..  ..............|.|.++..+|+|.|+|.|.|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N   79 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAAL--APELLVDAKSSTTSIFFPSAKRADSGNYKLKVKN   79 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBC--STTSEEEEETTEEEEECTTBCGGGCEEEEEEEEE
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeecee--eeeeeecccccceeeccccccccccEEEEEEEEE
Confidence            56777777888999999999999999999999999999876632  2222222333345899999999999999999999


Q ss_pred             CCcCeeEEEEEEE
Q psy15128        116 VAGSTTVRAFLQV  128 (292)
Q Consensus       116 ~~~~~~~~~~l~v  128 (292)
                      ..|.......|.|
T Consensus        80 ~~G~~~~~~~l~V   92 (93)
T d1wiua_          80 ELGEDEAIFEVIV   92 (93)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEE
Confidence            9998877776655

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.66  E-value=5.6e-17  Score=99.71  Aligned_cols=71  Identities=15%  Similarity=0.282  Sum_probs=60.0

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      ...+.+|+.+.|.|.+ .|.|+|.+.|+++|++|.   ..+..+..+         .|.|..+...|+|.|+|.|.|..|
T Consensus        12 ~~~v~~G~~~~l~C~~-~g~P~p~v~W~~~~~~i~---~~~~~~~~~---------~L~i~~v~~~d~G~Y~C~a~N~~G   78 (89)
T d1biha4          12 VIVVKQGQDVTIPCKV-TGLPAPNVVWSHNAKPLS---GGRATVTDS---------GLVIKGVKNGDKGYYGCRATNEHG   78 (89)
T ss_dssp             EEEECTTSCEEEECEE-EEESCCCCEEEETTEECC---SSSEEEETT---------EEEESSCCSTTCEEEEEEEEETTE
T ss_pred             CEEEeCCCeEEEEEEE-EEeCCCEEEEEeCCccCc---cccEEEeee---------eEEECCCChhhCEEEEEEEEECCC
Confidence            4577899999999998 899999999999999984   334444333         488999999999999999999999


Q ss_pred             cccc
Q psy15128        287 QQQH  290 (292)
Q Consensus       287 ~~~~  290 (292)
                      ++..
T Consensus        79 ~~~~   82 (89)
T d1biha4          79 DKYF   82 (89)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8764

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.66  E-value=1.1e-16  Score=100.35  Aligned_cols=78  Identities=17%  Similarity=0.249  Sum_probs=63.0

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +.+..+.+|+.+.|.|.+ .|.|.+.+.|+++|+.|..  +.++.+..++     ....|.|..+...|+|.|+|+|+|.
T Consensus         8 p~~~~v~~G~~~~l~C~~-~g~P~p~v~W~~~~~~l~~--~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~   79 (97)
T d1koaa1           8 PYGTEVGEGQSANFYCRV-IASSPPVVTWHKDDRELKQ--SVKYMKRYNG-----NDYGLTINRVKGDDKGEYTVRAKNS   79 (97)
T ss_dssp             CCCCEEETTSCEEEEEEE-ECSSCCEEEEEETTEECCS--BTTBBCCCST-----TEEEEEESCCCSGGGSCEEEEEEET
T ss_pred             CCCEEEeCCCcEEEEEEE-EEcCCCEEEEEEeeeccce--eeEEEEEecC-----CeeEEEeCCCceecCEEEEEEEEEC
Confidence            456788999999999998 8999999999999999863  3344333332     2235889999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      .|.++.
T Consensus        80 ~G~~~~   85 (97)
T d1koaa1          80 YGTKEE   85 (97)
T ss_dssp             TEEEEE
T ss_pred             CCEEEE
Confidence            998764

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.66  E-value=1.4e-16  Score=100.88  Aligned_cols=79  Identities=19%  Similarity=0.262  Sum_probs=64.0

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +.+..+.+|+.+.|.|.+ .|.|.|.+.|++||++|..+....+.....+      ...|.|..+...|+|.|+|.|+|.
T Consensus        15 ~~~~~v~~G~~~~l~C~~-~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~------~~~L~I~~~~~~D~G~Y~C~a~N~   87 (102)
T d1fhga_          15 ILDMEVVEGSAARFDCKV-EGYPDPEVMWFKDDNPVKESRHFQIDYDEEG------NCSLTISEVCGDDDAKYTCKAVNS   87 (102)
T ss_dssp             CCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCSSSEEEEECTTC------EEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCcEEEecCCcEEEEEEE-EeccCCeEEEEeeeccccceeeEeEEEecCc------eeeeEecCCCHHhCEEEEEEEEEC
Confidence            457788999999999998 8999999999999999974433333333332      235889999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      +|+++.
T Consensus        88 ~G~~~~   93 (102)
T d1fhga_          88 LGEATC   93 (102)
T ss_dssp             TEEEEE
T ss_pred             CcEEEE
Confidence            998764

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.65  E-value=1.6e-15  Score=95.83  Aligned_cols=91  Identities=27%  Similarity=0.435  Sum_probs=73.3

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEE--eeecEEEEccCCCCCCeEEEEEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV--TQEGTLRIQGVQKEDAGFFVCSA  113 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~C~~  113 (292)
                      +|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+...  ... ....  .....|.|.+++.+|.|.|+|.+
T Consensus         8 ~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~--~~~-~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   84 (102)
T d1fhga_           8 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKES--RHF-QIDYDEEGNCSLTISEVCGDDDAKYTCKA   84 (102)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCS--SSE-EEEECTTCEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccce--eeE-eEEEecCceeeeEecCCCHHhCEEEEEEE
Confidence            467777888899999999999999999999999999999877421  111 1111  12347999999999999999999


Q ss_pred             EeCCcCeeEEEEEEEE
Q psy15128        114 LSVAGSTTVRAFLQVT  129 (292)
Q Consensus       114 ~~~~~~~~~~~~l~v~  129 (292)
                      .|..|.....+.|.|.
T Consensus        85 ~N~~G~~~~~~~L~V~  100 (102)
T d1fhga_          85 VNSLGEATCTAELLVE  100 (102)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EECCcEEEEEEEEEEE
Confidence            9999988888777764

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.65  E-value=4.5e-16  Score=96.14  Aligned_cols=86  Identities=26%  Similarity=0.481  Sum_probs=68.4

Q ss_pred             CCcEEeC-CCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         36 PPSFVVR-PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        36 ~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      +|.+... +....+.+|+.++|.|.+.|.|.|.+.|++++....        ......++.|.|.+++.+|+|.|+|.+.
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~--------~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   75 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQT--------SKWLSSEPLLHIQNVDFEDEGTYECEAE   75 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCS--------CCCSBSSSEEEECSCCGGGCEEEEEEEE
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccc--------eEeeeeeeEEEeCCCCccCCEEEEEEEE
Confidence            4555543 577889999999999999999999999999765431        1112345689999999999999999999


Q ss_pred             eCCcCeeEEEEEEEE
Q psy15128        115 SVAGSTTVRAFLQVT  129 (292)
Q Consensus       115 ~~~~~~~~~~~l~v~  129 (292)
                      |..|.....+.|.|.
T Consensus        76 N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          76 NIKGRDTYQGRIIIH   90 (91)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEEEE
Confidence            999988777777664

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.64  E-value=2.1e-16  Score=99.22  Aligned_cols=79  Identities=19%  Similarity=0.202  Sum_probs=63.0

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +.+..+.+|+.+.|.|.+ .|.|.|.+.|+++|.+|..+.........++      ...|.|..+...|+|.|+|.|.|.
T Consensus        11 ~~~~~v~~g~~v~l~c~v-~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~------~~~L~I~~~~~~D~G~Y~c~a~N~   83 (98)
T d1g1ca_          11 IQSQTVGQGSDAHFRVRV-VGKPDPECEWYKNGVKIERSDRIYWYWPEDN------VCELVIRDVTGEDSASIMVKAINI   83 (98)
T ss_dssp             CCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEEEETT------EEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCcEEEcCCCcEEEEEEE-EEecCCeEEEEeCceEEeeeeeeEEEeccce------EEEEEeccCccccCEEEEEEEEEC
Confidence            356788999999999998 8999999999999999964333333222222      225889999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      .|.++.
T Consensus        84 ~G~~~~   89 (98)
T d1g1ca_          84 AGETSS   89 (98)
T ss_dssp             TEEEEE
T ss_pred             CcEEEE
Confidence            998764

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.64  E-value=1.5e-16  Score=98.82  Aligned_cols=78  Identities=23%  Similarity=0.296  Sum_probs=63.8

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +.+..+.+|+.+.|.|.+ .|.|.|.+.|+++|+.+..+....+.....       ...|.|..+...|+|.|+|.|+|.
T Consensus         9 ~~~~~v~~G~~~~l~c~~-~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~-------~~~L~I~~~~~~D~G~Y~c~a~N~   80 (93)
T d1wiua_           9 SRKIKIKAGFTHNLEVDF-IGAPDPTATWTVGDSGAALAPELLVDAKSS-------TTSIFFPSAKRADSGNYKLKVKNE   80 (93)
T ss_dssp             CCEEEECSSBCCEEEEEE-ECCSSCEEEEECSSSSCBCSTTSEEEEETT-------EEEEECTTBCGGGCEEEEEEEEET
T ss_pred             CCcEEEeCCCeEEEEEEE-EEecCCeEEEEeeeeeceeeeeeeeccccc-------ceeeccccccccccEEEEEEEEEC
Confidence            457789999999999998 899999999999999886444433333222       236889999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      .|+++.
T Consensus        81 ~G~~~~   86 (93)
T d1wiua_          81 LGEDEA   86 (93)
T ss_dssp             TEEEEE
T ss_pred             CCEEEE
Confidence            999864

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3e-16  Score=99.02  Aligned_cols=79  Identities=19%  Similarity=0.176  Sum_probs=64.0

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +....+.+|+.+.|.|.+ .|.|.+.+.|+++|+.|......++....+       ...|.|..+..+|+|.|+|.|+|.
T Consensus         7 p~~~~v~~G~~~~l~C~v-~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~-------~~~L~I~~~~~~D~G~Y~C~a~N~   78 (101)
T d2cqva1           7 PEDQKVRAGESVELFGKV-TGTQPITCTWMKFRKQIQESEHMKVENSEN-------GSKLTILAARQEHCGCYTLLVENK   78 (101)
T ss_dssp             CCSEEEETTCCEEEEEEE-ESSSSCEEEEEESSSBCCCSSSEEEEECSS-------EEEEEETTCCTTTCEEEEEEEECS
T ss_pred             CCcEEEeCCCcEEEEEEE-EecCCCEEEEEeCceeeccCCcEEEEEecc-------eeEEEEeeCCcccCEEEEEEEEEC
Confidence            457789999999999998 899999999999999986443333333222       236889999999999999999999


Q ss_pred             ccccccC
Q psy15128        285 RNQQQHG  291 (292)
Q Consensus       285 ~g~~~~~  291 (292)
                      .|+++.+
T Consensus        79 ~G~~~~~   85 (101)
T d2cqva1          79 LGSRQAQ   85 (101)
T ss_dssp             SCEEECC
T ss_pred             CCEEEEE
Confidence            9998754

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.7e-16  Score=101.09  Aligned_cols=85  Identities=15%  Similarity=0.271  Sum_probs=65.3

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      ...+.+|+.++|.|.+..|.|.+.+.|+++|+.+.......................|.|..+..+|+|.|+|.|+|.+|
T Consensus        11 ~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   90 (104)
T d1nbqa2          11 PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYG   90 (104)
T ss_dssp             BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSS
T ss_pred             CCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCC
Confidence            34678999999999985689999999999999886444444333333333333445688999999999999999999999


Q ss_pred             ccccC
Q psy15128        287 QQQHG  291 (292)
Q Consensus       287 ~~~~~  291 (292)
                      ++..+
T Consensus        91 ~~~~s   95 (104)
T d1nbqa2          91 TPMTS   95 (104)
T ss_dssp             CCEEC
T ss_pred             ceEEE
Confidence            88643

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.63  E-value=1.9e-15  Score=94.51  Aligned_cols=87  Identities=17%  Similarity=0.233  Sum_probs=65.9

Q ss_pred             CCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCee
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT  121 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~  121 (292)
                      .+....+.+|+++.|.|.+.|.|.+.+.|++++..+..................|.|.+++.+|+|.|+|.|.|..|...
T Consensus         9 ~~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   88 (97)
T d1biha3           9 VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ   88 (97)
T ss_dssp             ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCE
T ss_pred             CCCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEE
Confidence            35678889999999999999999999999999987743322211111122345899999999999999999999988754


Q ss_pred             -EEEEEEE
Q psy15128        122 -VRAFLQV  128 (292)
Q Consensus       122 -~~~~l~v  128 (292)
                       ..+.|.|
T Consensus        89 s~s~~L~V   96 (97)
T d1biha3          89 KHSLKLTV   96 (97)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence             3556655

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.62  E-value=4.1e-16  Score=97.56  Aligned_cols=78  Identities=14%  Similarity=0.185  Sum_probs=62.9

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      .+..+.+|+++.|.|.+ .|.|.+.+.|+++|+.+......++......     ....|.|..+..+|+|.|+|.|.|..
T Consensus        11 ~~~~~~~G~~v~l~C~~-~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~   84 (97)
T d1biha3          11 KDMMAKAGDVTMIYCMY-GSNPMGYPNYFKNGKDVNGNPEDRITRHNRT-----SGKRLLFKTTLPEDEGVYTCEVDNGV   84 (97)
T ss_dssp             CSEEEETTSCEEEEEEE-ECSSCCCCEEEETTEECCCCTTSSEESCSSS-----TTSEEEESSCCGGGCEEEEEEECCSS
T ss_pred             CCEEEecCCeEEEEEEE-EEecCCEEEEEEeeeeccccceeeeeeeeec-----CCCEEEEEeccccccEEEEEEEEECC
Confidence            46788999999999998 8999999999999999965544444432221     22368999999999999999999999


Q ss_pred             cccc
Q psy15128        286 NQQQ  289 (292)
Q Consensus       286 g~~~  289 (292)
                      |+..
T Consensus        85 G~~~   88 (97)
T d1biha3          85 GKPQ   88 (97)
T ss_dssp             SSCE
T ss_pred             CcEE
Confidence            9753

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=2.5e-15  Score=92.88  Aligned_cols=90  Identities=23%  Similarity=0.354  Sum_probs=70.6

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeC
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                      +.+...|....+.+|+.+.|.|.+.|.|.|.+.|++++..+.....   .......++.|.|.+++..|+|.|+|.+.|.
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~---~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~   78 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD---VRFIVLSNNYLQIRGIKKTDEGTYRCEGRIL   78 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCC---TTEEECTTSCEEETTCCGGGCEEEEEEEEEG
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccc---eeeeeeeeeeEEECCCCHHhCEEEEEEEEEC
Confidence            3456677888999999999999999999999999999987643222   1233334567999999999999999999998


Q ss_pred             CcCeeEEEEEEEE
Q psy15128        117 AGSTTVRAFLQVT  129 (292)
Q Consensus       117 ~~~~~~~~~l~v~  129 (292)
                      .+.......+.|.
T Consensus        79 ~~~~~~~~~i~Vi   91 (92)
T d1epfa2          79 ARGEINFKDIQVI   91 (92)
T ss_dssp             GGTEEEEEEEEEE
T ss_pred             cCCEEEEEEEEEE
Confidence            7776666655553

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.61  E-value=2.4e-16  Score=97.45  Aligned_cols=87  Identities=22%  Similarity=0.394  Sum_probs=68.9

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      +..|.+..+.+|+++.|.|.+.|.|.|.+.|++++..+.  ...............|.|.+++.+|+|.|+|.+.|..|.
T Consensus         3 i~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~--~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~   80 (91)
T d1tnna_           3 LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLS--TSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGK   80 (91)
T ss_dssp             SBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTC--SSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCB
T ss_pred             EeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccc--cccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCE
Confidence            345667889999999999999999999999999987653  222222233334568999999999999999999999998


Q ss_pred             eeEEEEEEE
Q psy15128        120 TTVRAFLQV  128 (292)
Q Consensus       120 ~~~~~~l~v  128 (292)
                      ....+.|.|
T Consensus        81 ~~~~~~l~V   89 (91)
T d1tnna_          81 QEAEFTLTI   89 (91)
T ss_dssp             CCEEEEEEC
T ss_pred             EEEEEEEEE
Confidence            877777665

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.61  E-value=2.4e-16  Score=98.61  Aligned_cols=77  Identities=19%  Similarity=0.302  Sum_probs=59.8

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      ...+..|+.+.|.|.+ .|.|.|.+.|++||+++...........      ......|.|..+...|+|.|+|.|+|..|
T Consensus        14 ~~~v~~G~~v~l~C~~-~g~P~p~i~W~kng~~l~~~~~~~~~~~------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   86 (97)
T d3dara1          14 LHAVPAANTVKFRCPA-GGNPMPTMRWLKNGKEFKQEHRIGGYKV------RNQHWSLIMESVVPSDKGNYTCVVENEYG   86 (97)
T ss_dssp             EEEECTTCCEEEECCE-EEESCCEEEEEETTEECCGGGSTTCCEE------EGGGTEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             cEEECCCCcEEEEEEE-eEECCCEEEEEECCEeccccCceeeEEE------cCCcEEEEECCCCcccCEEEEEEEEECCC
Confidence            4567899999999998 8999999999999999853222111111      11223689999999999999999999999


Q ss_pred             cccc
Q psy15128        287 QQQH  290 (292)
Q Consensus       287 ~~~~  290 (292)
                      +++.
T Consensus        87 ~~~~   90 (97)
T d3dara1          87 SINH   90 (97)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8764

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=8.3e-16  Score=95.08  Aligned_cols=76  Identities=17%  Similarity=0.329  Sum_probs=63.8

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      |....+.+|+.+.|.|.+ .|.|.|.+.|+++++.+......++....++        .|.|..+...|+|.|+|.|.|.
T Consensus         8 P~~~~v~~G~~~~l~C~v-~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~--------~L~I~~~~~~D~G~Y~C~a~n~   78 (92)
T d1epfa2           8 PTPQEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILKKDVRFIVLSNN--------YLQIRGIKKTDEGTYRCEGRIL   78 (92)
T ss_dssp             CSSEECCTTSCEEECCEE-ECSSCCEEEEEETTEEGGGGCCTTEEECTTS--------CEEETTCCGGGCEEEEEEEEEG
T ss_pred             CCCEEEeCCCcEEEEEEE-eecCCCeEEEEEcCcccccccceeeeeeeee--------eEEECCCCHHhCEEEEEEEEEC
Confidence            567889999999999998 8999999999999999876555555554442        5889999999999999999998


Q ss_pred             ccccc
Q psy15128        285 RNQQQ  289 (292)
Q Consensus       285 ~g~~~  289 (292)
                      .|.+.
T Consensus        79 ~~~~~   83 (92)
T d1epfa2          79 ARGEI   83 (92)
T ss_dssp             GGTEE
T ss_pred             cCCEE
Confidence            87653

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.60  E-value=6.1e-16  Score=98.18  Aligned_cols=78  Identities=13%  Similarity=0.197  Sum_probs=62.3

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      ....+.+|+.+.|.|.+..+.|.+.+.|+++|.++......+......       ...|.|..+..+|+|.|+|.|+|..
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~-------~~~L~I~~v~~~D~G~Y~C~a~N~~   84 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQT-------TGNLYIAKTEASDLGNYSCFATSHI   84 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTT-------TCCEEESSCCGGGCEEEEEEEEEEE
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecC-------CCEEeecccccccCcEEEEEEEECC
Confidence            457899999999999976789999999999998775444444333222       2258899999999999999999999


Q ss_pred             ccccc
Q psy15128        286 NQQQH  290 (292)
Q Consensus       286 g~~~~  290 (292)
                      |+.+.
T Consensus        85 g~~~~   89 (105)
T d1cs6a2          85 DFITK   89 (105)
T ss_dssp             TTEEE
T ss_pred             CCEEE
Confidence            98764

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.60  E-value=9.7e-16  Score=95.41  Aligned_cols=76  Identities=16%  Similarity=0.262  Sum_probs=60.2

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN  283 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n  283 (292)
                      +.+..+.+|+.+.|.|.+ .|.|.+ .+.|+++|+.+............+        ..|.|..+..+|+|.|+|+|+|
T Consensus         9 p~~~~v~~g~~~~l~C~~-~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~--------~~L~i~~v~~~D~G~Y~C~a~N   79 (94)
T d1biha1           9 PAEVLFRENNPTVLECII-EGNDQGVKYSWKKDGKSYNWQEHNAALRKDE--------GSLVFLRPQASDEGHYQCFAET   79 (94)
T ss_dssp             CSEEEEETTSCEEECCCE-ESCCSSCEEEEEESSSBCCTTTTTEEECTTS--------CCEEESSCCGGGCEEEEEEEEE
T ss_pred             CCcEEEeCCCeEEEEEEe-cCCCCeeEEEEEeeeeeeeeecceeeecccc--------eEEEEeccChhcCeEEEEEEEe
Confidence            567889999999999998 777765 799999999986433333322222        2588999999999999999999


Q ss_pred             cccccc
Q psy15128        284 IRNQQQ  289 (292)
Q Consensus       284 ~~g~~~  289 (292)
                      .+|++.
T Consensus        80 ~~G~~~   85 (94)
T d1biha1          80 PAGVAS   85 (94)
T ss_dssp             TTEEEE
T ss_pred             CCCEEE
Confidence            999864

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.60  E-value=5.4e-15  Score=92.34  Aligned_cols=82  Identities=24%  Similarity=0.381  Sum_probs=65.0

Q ss_pred             cEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEE
Q psy15128         46 QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF  125 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~  125 (292)
                      ..+.+|+.+.|.|.+.|.|.|.+.|++++..+..... ............|.|.++..+|+|.|+|.+.|..|.....+.
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   93 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR-IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH   93 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGS-TTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCc-eeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEE
Confidence            4577899999999999999999999999988753221 112222334568999999999999999999999998777777


Q ss_pred             EEE
Q psy15128        126 LQV  128 (292)
Q Consensus       126 l~v  128 (292)
                      |.|
T Consensus        94 l~V   96 (97)
T d3dara1          94 LDV   96 (97)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            665

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.8e-15  Score=97.20  Aligned_cols=83  Identities=18%  Similarity=0.264  Sum_probs=60.1

Q ss_pred             EEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCc-cccccccccccccccccccceeEEEEeecccc
Q psy15128        209 RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPW-FDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQ  287 (292)
Q Consensus       209 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~  287 (292)
                      .+.+|+.+.|.|.+..+.|.+.|.|+++|..+............... ........|.|..+..+|+|.|+|.|+|.+|+
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   92 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT   92 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSC
T ss_pred             EEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCc
Confidence            57899999999998668999999999999988543332222222211 11223346889999999999999999999998


Q ss_pred             cccC
Q psy15128        288 QQHG  291 (292)
Q Consensus       288 ~~~~  291 (292)
                      +.++
T Consensus        93 ~~~s   96 (110)
T d1f97a2          93 AMRS   96 (110)
T ss_dssp             CEEC
T ss_pred             EEEE
Confidence            7643

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=9.9e-16  Score=94.35  Aligned_cols=75  Identities=13%  Similarity=0.113  Sum_probs=59.6

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +....+.+|+++.|.|.+..+.|.+.+.|++++..+...   +.....         ..|.|..+...|+|.|+|.|+|.
T Consensus         9 p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~---~~~~~~---------~~L~i~~v~~~d~G~Y~C~a~N~   76 (89)
T d1gl4b_           9 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS---RAMDFN---------GILTIRNVQPSDAGTYVCTGSNM   76 (89)
T ss_dssp             CCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCT---TEEEET---------TEEEECSCCGGGCEEEEEEEECS
T ss_pred             CCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecc---ccEeec---------eEEEEecCCcccCEEEEEEEEEC
Confidence            356788999999999998557888999999998876422   222211         25889999999999999999999


Q ss_pred             ccccccC
Q psy15128        285 RNQQQHG  291 (292)
Q Consensus       285 ~g~~~~~  291 (292)
                      .|.++.+
T Consensus        77 ~G~~~~~   83 (89)
T d1gl4b_          77 FAMDQGT   83 (89)
T ss_dssp             SCEEEEE
T ss_pred             CCEEEEE
Confidence            9987643

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.3e-15  Score=90.05  Aligned_cols=74  Identities=15%  Similarity=0.201  Sum_probs=62.8

Q ss_pred             ccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEE
Q psy15128         45 DQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  124 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~  124 (292)
                      ...+.+|++++|.|.+.|.|.|.+.|++++..+.            .....|.|.++..+|+|.|+|.|.|..|.....+
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~------------~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~   75 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI------------QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKI   75 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEE------------EESSEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeecccce------------eeeeeeeeeecccccccEEEEEEEeCCCEEEEEE
Confidence            4568899999999999999999999999876542            3356799999999999999999999998877777


Q ss_pred             EEEEEe
Q psy15128        125 FLQVTS  130 (292)
Q Consensus       125 ~l~v~~  130 (292)
                      .|.|..
T Consensus        76 ~v~V~~   81 (84)
T d2nxyb2          76 DIVVLA   81 (84)
T ss_dssp             EECEEC
T ss_pred             EEEEEe
Confidence            776653

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6.2e-15  Score=89.25  Aligned_cols=81  Identities=22%  Similarity=0.400  Sum_probs=63.0

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeeeCCC-eeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      |.+...|....+.+|+.+.|.|.+.|.|.| .|.|+|++..+..           ...+.+.|.....+|+|.|+|.|.|
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~-----------~~~~~~~l~~~~~~d~G~Y~C~A~N   70 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGG-----------PAPSPSVLNVTGVTQSTMFSCEAHN   70 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSC-----------SEESSEEEEECCCSSCEEEEEEEEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCC-----------CCCcceEEecCCccccEEEEEEEEc
Confidence            677888888999999999999999999987 8999999987631           1123455666777899999999999


Q ss_pred             CCcCe-eEEEEEEE
Q psy15128        116 VAGST-TVRAFLQV  128 (292)
Q Consensus       116 ~~~~~-~~~~~l~v  128 (292)
                      ..|.. +..+.|.|
T Consensus        71 ~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          71 LKGLASSRTATVHL   84 (85)
T ss_dssp             TTEEEECCCEEEEE
T ss_pred             CCCcEEEEEEEEEE
Confidence            98853 23454443

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=5e-16  Score=97.91  Aligned_cols=75  Identities=24%  Similarity=0.413  Sum_probs=58.5

Q ss_pred             eEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCc--eEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        208 TRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK--RVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      .++..|+.+.|.|.+ .|.|.|.+.|+++|+++......  ......       ....|.|..+..+|+|.|+|.|+|..
T Consensus        15 ~t~~~G~~v~l~C~~-~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~N~~   86 (100)
T d1qz1a3          15 ATANLGQSVTLVCDA-DGFPEPTMSWTKDGEPIENEEEDDEKHIFSD-------DSSELTIRNVDKNDEAEYVCIAENKA   86 (100)
T ss_dssp             EETTSCCCEEEEEEE-EEESCCEEEEEETTEECCCC--CCSSEEECT-------TSCEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEcCCCCEEEEEEE-EEecCCEEEEEeCCcccccccccceeEEeec-------CceEEEeCCCCcccCEEEEEEEEECC
Confidence            455689999999998 89999999999999988533222  111111       22368899999999999999999999


Q ss_pred             ccccc
Q psy15128        286 NQQQH  290 (292)
Q Consensus       286 g~~~~  290 (292)
                      |+++.
T Consensus        87 G~~~~   91 (100)
T d1qz1a3          87 GEQDA   91 (100)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            98764

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.1e-15  Score=93.24  Aligned_cols=87  Identities=21%  Similarity=0.343  Sum_probs=63.4

Q ss_pred             CCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe-e
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST-T  121 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~-~  121 (292)
                      |....+.+|+.+.|.|.+.+.|.+.+.|+|++..+..................|.|.+++.+|+|.|+|.+.|..|.. +
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S   82 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS   82 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEE
Confidence            456788999999999999999999999999998763211100000011123479999999999999999999988864 3


Q ss_pred             EEEEEEEE
Q psy15128        122 VRAFLQVT  129 (292)
Q Consensus       122 ~~~~l~v~  129 (292)
                      ..+.|.|.
T Consensus        83 ~~~~l~V~   90 (91)
T d1rhfa1          83 QPVWLTVE   90 (91)
T ss_dssp             CCEEEEEE
T ss_pred             EEEEEEEE
Confidence            45666553

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.3e-15  Score=95.75  Aligned_cols=84  Identities=19%  Similarity=0.253  Sum_probs=61.7

Q ss_pred             cceEEeCCCceEEEe---eCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128        206 KDTRVASGETALLEC---GPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK  282 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C---~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~  282 (292)
                      ....+..|..+.+.|   .+ .|.|.|.+.|++||++|.......................|.|..+...|+|.|+|+|+
T Consensus         5 ~~~~~~~g~~~~~~ci~~~v-~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~   83 (107)
T d1he7a_           5 ASVQLHTAVEMHHWCIPFSV-DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA   83 (107)
T ss_dssp             CCCCCCCCCCCCEEEEEEEE-CCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEE
T ss_pred             CEeEECCCeEEEEEEEEEEE-EEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEE
Confidence            344555566666555   88 89999999999999999755544444444333222233468899999999999999999


Q ss_pred             eccccccc
Q psy15128        283 NIRNQQQH  290 (292)
Q Consensus       283 n~~g~~~~  290 (292)
                      |..|+++.
T Consensus        84 N~~G~~~~   91 (107)
T d1he7a_          84 NPFGQASA   91 (107)
T ss_dssp             ETTEEEEE
T ss_pred             eCCCEEEE
Confidence            99998764

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.8e-15  Score=91.71  Aligned_cols=66  Identities=12%  Similarity=0.150  Sum_probs=54.8

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      ...+.+|++++|.|.+ .|.|+|.+.|++++..+..                 ....|.|..+..+|+|.|+|.|+|..|
T Consensus         8 ~~~v~~G~~~~L~C~~-~g~p~P~i~W~~~~~~~~~-----------------~~~~l~i~~v~~~DsG~Y~C~a~N~~g   69 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLES-PPGSSPSVQCRSPRGKNIQ-----------------GGKTLSVSQLELQDSGTWTCTVLQNQK   69 (84)
T ss_dssp             SSCEETTCCEEEEEEC-CTTCCCEEEEECTTCCEEE-----------------ESSEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CeEEECCCeEEEEEEe-EcCCchheEEEeeccccee-----------------eeeeeeeeecccccccEEEEEEEeCCC
Confidence            4568899999999998 8999999999997654421                 112477889999999999999999999


Q ss_pred             cccc
Q psy15128        287 QQQH  290 (292)
Q Consensus       287 ~~~~  290 (292)
                      +...
T Consensus        70 ~~~~   73 (84)
T d2nxyb2          70 KVEF   73 (84)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8765

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.6e-14  Score=88.88  Aligned_cols=79  Identities=14%  Similarity=0.188  Sum_probs=62.9

Q ss_pred             cEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEE
Q psy15128         46 QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF  125 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~  125 (292)
                      ..+.+|+.+.|.|.+.|.|.|.+.|++++....     ..........+.|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus        11 ~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~-----~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~   85 (90)
T d1vcaa2          11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL-----NGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQ   85 (90)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCC-----SSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEE
T ss_pred             EEEECCCEEEEEEeccCCCCceEEEEecCccce-----eeeeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEE
Confidence            345689999999999999999999999876542     111222334568999999999999999999999998887777


Q ss_pred             EEEE
Q psy15128        126 LQVT  129 (292)
Q Consensus       126 l~v~  129 (292)
                      |.|.
T Consensus        86 v~V~   89 (90)
T d1vcaa2          86 VEIY   89 (90)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7664

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.5e-15  Score=93.58  Aligned_cols=75  Identities=16%  Similarity=0.285  Sum_probs=59.2

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      .....+.+|+++.|.|.+ .+ |+|.+.|+++|+++... ..+..+..+        ..|.|..+..+|+|.|+|.|.|.
T Consensus         4 ~~~~~~~~G~~~~l~C~~-~g-~~~~v~W~~~g~~l~~~-~~~~~~~~~--------~~L~I~~v~~~DsG~Y~C~A~n~   72 (92)
T d1olza1           4 YRQHFFKHGGTAELKCSQ-KS-NLARVFWKFQNGVLKAE-SPKYGLMGR--------KNLLIFNLSEGDSGVYQCLSEER   72 (92)
T ss_dssp             EEEEEEETTSCEEECCCC-SC-TTCEEEEEESSSBCCCC-SSSBCCTTT--------TCEEECSCCGGGCEEEEEEEEEE
T ss_pred             hhheeEeCCCEEEEEEEe-ec-cCCceeeecCcccceee-eeeeeccee--------eEEEECCCCHHHCcEEEEEEEEc
Confidence            356788999999999998 66 66799999999988643 233333332        25899999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      +|..+.
T Consensus        73 ~g~~~~   78 (92)
T d1olza1          73 VKNKTV   78 (92)
T ss_dssp             CSSSEE
T ss_pred             CCCEEE
Confidence            997653

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.6e-15  Score=89.85  Aligned_cols=68  Identities=25%  Similarity=0.391  Sum_probs=54.0

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN  283 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n  283 (292)
                      +.+..+.+|+.+.|.|.+ .|.|.| .|.|+|||.++......                .+.+......|+|.|+|.|+|
T Consensus         8 P~~~~v~~G~~~~l~C~~-~g~P~P~~i~W~k~g~~i~~~~~~----------------~~~l~~~~~~d~G~Y~C~A~N   70 (85)
T d1rhfa2           8 PKDLAVPPNAPFQLSCEA-VGPPEPVTIVWWRGTTKIGGPAPS----------------PSVLNVTGVTQSTMFSCEAHN   70 (85)
T ss_dssp             CCCEEECTTCCEEEEEEE-ECSSSCCEEEEEETTEECSCSEES----------------SEEEEECCCSSCEEEEEEEEE
T ss_pred             CCcEEEcCCCEEEEEEEE-ecCCcceEEEEEECCEECCCCCCc----------------ceEEecCCccccEEEEEEEEc
Confidence            457789999999999999 899887 89999999988522111                234555667799999999999


Q ss_pred             cccccc
Q psy15128        284 IRNQQQ  289 (292)
Q Consensus       284 ~~g~~~  289 (292)
                      .+|.+.
T Consensus        71 ~~G~~~   76 (85)
T d1rhfa2          71 LKGLAS   76 (85)
T ss_dssp             TTEEEE
T ss_pred             CCCcEE
Confidence            999653

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=4.4e-15  Score=92.88  Aligned_cols=80  Identities=16%  Similarity=0.318  Sum_probs=58.6

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCC-CeEEEeE-cCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128        205 PKDTRVASGETALLECGPPKGQPE-PTLHWKK-NGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK  282 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~  282 (292)
                      |....+..|+++.|.|.+ .|.|+ +.|.|++ +|..+.. ...++......    .....|.|..+...|+|.|+|.|+
T Consensus         7 P~~~~v~~G~~~~l~C~v-~g~p~~~~v~W~~~~g~~~~~-~~~~~~~~~~~----~~~~~L~I~~~~~~D~G~Y~C~a~   80 (97)
T d1epfa1           7 PSQGEISVGESKFFLCQV-AGDAKDKDISWFSPNGEKLSP-NQQRISVVWND----DDSSTLTIYNANIDDAGIYKCVVT   80 (97)
T ss_dssp             SSSEEEETTCCEEEEEEE-CCCSCCCEEEEECTTSCEECC-BSSSEEEEEEE----TTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCEEEccCCcEEEEEEE-EeccCCCEEEEEEeeeeeeee-ccccEEEEeec----CcceEEEcccCchhhceEEEEEEE
Confidence            456788999999999998 77774 7999999 5565542 23333322111    122368999999999999999999


Q ss_pred             eccccccc
Q psy15128        283 NIRNQQQH  290 (292)
Q Consensus       283 n~~g~~~~  290 (292)
                      |..|+++.
T Consensus        81 N~~G~~~~   88 (97)
T d1epfa1          81 AEDGTQSE   88 (97)
T ss_dssp             ETTTEEEE
T ss_pred             eCCCcEEE
Confidence            99997653

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.9e-14  Score=90.21  Aligned_cols=93  Identities=25%  Similarity=0.241  Sum_probs=70.0

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeeeC---CCeeEEEECCeEEeeccCCCcceeE-------EeeecEEEEccCCCCCC
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGSP---LPSVFWTQEGSQVLMFPGNAYGHLH-------VTQEGTLRIQGVQKEDA  106 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~  106 (292)
                      +.++..|....+..|++++|.|.+.|.|   .|.+.|++++...............       ......|.|.+++.+|+
T Consensus         5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   84 (110)
T d2avga1           5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT   84 (110)
T ss_dssp             CSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCC
T ss_pred             CEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHC
Confidence            4677788889999999999999999987   5689999987533211111110000       01234799999999999


Q ss_pred             eEEEEEEEeCCcCeeEEEEEEEE
Q psy15128        107 GFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus       107 g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      |.|+|.+.|..|.......|.|.
T Consensus        85 G~Y~C~a~N~~G~~~~~~~L~V~  107 (110)
T d2avga1          85 GGYRCEVSTKDKFDCSNFNLTVH  107 (110)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cEEEEEEEECCCeEEEEEEEEEE
Confidence            99999999999999888888876

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=3.2e-14  Score=88.84  Aligned_cols=89  Identities=16%  Similarity=0.319  Sum_probs=61.3

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCC-CeeEEEECCeEEeeccCCCccee-EEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPL-PSVFWTQEGSQVLMFPGNAYGHL-HVTQEGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      .+.|....+..|+++.|.|.+.+.|. +.+.|++++.............. .....+.|.|.+++.+|+|.|+|.+.|..
T Consensus         4 ~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   83 (97)
T d1epfa1           4 DIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAED   83 (97)
T ss_dssp             EEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCC
Confidence            34556778899999999999998874 69999995433222211111111 11223579999999999999999999988


Q ss_pred             cCe-eEEEEEEE
Q psy15128        118 GST-TVRAFLQV  128 (292)
Q Consensus       118 ~~~-~~~~~l~v  128 (292)
                      |.. ...+.|.|
T Consensus        84 G~~~~~tv~l~V   95 (97)
T d1epfa1          84 GTQSEATVNVKI   95 (97)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CcEEEEEEEEEE
Confidence            754 23444444

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.3e-14  Score=89.16  Aligned_cols=80  Identities=29%  Similarity=0.406  Sum_probs=63.9

Q ss_pred             CCCccEEecCCcEEEEEEEe-eeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         42 RPQDQKVGLNGIASFQCVAE-GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      .+....+.+|+++.|.|.+. +.|.+.+.|++++..+...       .....++.|.|.+++.+|+|.|+|.+.|..|..
T Consensus         8 ~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~-------~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~   80 (89)
T d1gl4b_           8 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS-------RAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMD   80 (89)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCT-------TEEEETTEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             CCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecc-------ccEeeceEEEEecCCcccCEEEEEEEEECCCEE
Confidence            35567788999999999997 4678899999988765311       123346789999999999999999999999987


Q ss_pred             eEEEEEEE
Q psy15128        121 TVRAFLQV  128 (292)
Q Consensus       121 ~~~~~l~v  128 (292)
                      ...+.|.|
T Consensus        81 ~~~~~l~V   88 (89)
T d1gl4b_          81 QGTATLHV   88 (89)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            77766655

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.4e-14  Score=88.63  Aligned_cols=78  Identities=18%  Similarity=0.155  Sum_probs=61.1

Q ss_pred             CccEEecCCcEEEEEEEe-eeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeE
Q psy15128         44 QDQKVGLNGIASFQCVAE-GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV  122 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~  122 (292)
                      ....+.+|+++.|.|.+. +.|.+.+.|++.+..+.       ........+.|.|.+++.+|+|.|+|.|.|..+....
T Consensus        11 ~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~-------~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~   83 (90)
T d1gsma1          11 PVVAVALGASRQLTCRLACADRGASVQWRGLDTSLG-------AVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQH   83 (90)
T ss_dssp             SEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTC-------CEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeee-------eeeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEE
Confidence            346678999999999885 67889999998765431       1222334568999999999999999999998887777


Q ss_pred             EEEEEE
Q psy15128        123 RAFLQV  128 (292)
Q Consensus       123 ~~~l~v  128 (292)
                      ++.|.|
T Consensus        84 s~~l~V   89 (90)
T d1gsma1          84 TVQLLV   89 (90)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            777665

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=8.3e-16  Score=95.17  Aligned_cols=89  Identities=17%  Similarity=0.164  Sum_probs=70.1

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCe-EEEEEEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAG-FFVCSAL  114 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~C~~~  114 (292)
                      .|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....    ..........|.|.+++.+|.| .|+|.|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~----~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~   77 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATV----MKSGGLPSLGLTLANVTSDLNRKNVTCWAE   77 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEE----CCCCCSSEEEEEEESCCSTTTTCCEEECCE
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeee----eeeeeccceeEEEccccccccceEEEEEEE
Confidence            5777777888889999999999999999999999999986553211    1112233458999999999999 6999999


Q ss_pred             eCCcCeeEEEEEEE
Q psy15128        115 SVAGSTTVRAFLQV  128 (292)
Q Consensus       115 ~~~~~~~~~~~l~v  128 (292)
                      |..|.....+.|.|
T Consensus        78 N~~G~~~~s~~l~V   91 (92)
T d2ifga1          78 NDVGRAEVSVQVNV   91 (92)
T ss_dssp             ETTEECCEEECCCC
T ss_pred             cCCCEEEEEEEEEE
Confidence            99998777665543

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.9e-15  Score=90.84  Aligned_cols=74  Identities=12%  Similarity=0.179  Sum_probs=58.2

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      ...+.+|+.+.|.|.+ .|.|+|.+.|++++..+.  .+.....        .....|.|..+..+|+|.|+|+|.|..|
T Consensus        10 ~~~~~~G~~v~l~C~~-~g~p~p~i~W~~~~~~~~--~~~~~~~--------~~~~~L~I~~v~~~d~G~Y~C~a~N~~g   78 (90)
T d1vcaa2          10 RYLAQIGDSVSLTCST-TGCESPFFSWRTQIDSPL--NGKVTNE--------GTTSTLTMNPVSFGNEHSYLCTATCESR   78 (90)
T ss_dssp             EEEEETTSCEEEEEEE-ESCSSCEEEEEETTCCCC--SSEEEEE--------TTEEEEEESSCCGGGCSEEEEEEEETTE
T ss_pred             cEEEECCCEEEEEEec-cCCCCceEEEEecCccce--eeeeeee--------cCCcEEEEecccccccceEEEEEEeCCC
Confidence            4566899999999999 899999999999876553  2221111        1223699999999999999999999999


Q ss_pred             ccccC
Q psy15128        287 QQQHG  291 (292)
Q Consensus       287 ~~~~~  291 (292)
                      +.+++
T Consensus        79 ~~~~~   83 (90)
T d1vcaa2          79 KLEKG   83 (90)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98754

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.3e-14  Score=92.31  Aligned_cols=92  Identities=16%  Similarity=0.172  Sum_probs=67.3

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeeeC---CCeeEEEECCeEEeeccCCCcceeE-------EeeecEEEEccCCCCCCeE
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGSP---LPSVFWTQEGSQVLMFPGNAYGHLH-------VTQEGTLRIQGVQKEDAGF  108 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~g~  108 (292)
                      |+..|....+.+|++++|.|.+.|.|   .|.+.|+|++...............       ......|.|.+++.+|+|.
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN   82 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeE
Confidence            34567788999999999999999987   5799999986432211111110000       0112369999999999999


Q ss_pred             EEEEEEeCCcCeeEEEEEEEEe
Q psy15128        109 FVCSALSVAGSTTVRAFLQVTS  130 (292)
Q Consensus       109 Y~C~~~~~~~~~~~~~~l~v~~  130 (292)
                      |+|.|.|..|.....+.|.|..
T Consensus        83 Y~C~a~N~~G~~~~~~~L~V~~  104 (113)
T d2dava1          83 YRCEVTYKDKFDSCSFDLEVHE  104 (113)
T ss_dssp             EEEEEECSSCEEEECCEEEEEC
T ss_pred             EEEEEEeCCCEEEEEEEEEEEc
Confidence            9999999999888888888764

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.55  E-value=2.5e-15  Score=93.97  Aligned_cols=74  Identities=22%  Similarity=0.431  Sum_probs=58.2

Q ss_pred             cceEEeCC---CceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128        206 KDTRVASG---ETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK  282 (292)
Q Consensus       206 ~~~~~~~g---~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~  282 (292)
                      .+..+..|   +.++|.|.+ .|.|.|.+.|++||+.+......++.....        ..|.|..+..+|+|.|+|+|+
T Consensus        12 ~~~~~~~g~~~~~v~l~C~~-~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~--------~~l~i~~~~~~d~G~Y~C~a~   82 (97)
T d1cs6a1          12 AHTLFPEGSAEEKVTLTCRA-RANPPATYRWKMNGTELKMGPDSRYRLVAG--------DLVISNPVKAKDAGSYQCVAT   82 (97)
T ss_dssp             CCEEEETTCSCCEEEECCEE-EEESCCEEEEEETTEECCCSTTSSEEEETT--------EEEEESCCHHHHCEEEEEEEE
T ss_pred             CCEEEECccCCCeEEEEEEE-EEeCCCEEEEEEeeeeccCCCCceEEeeee--------eEEEEecccccCCEEEEEEEE
Confidence            44455554   789999998 899999999999999997555544444322        246677889999999999999


Q ss_pred             eccccc
Q psy15128        283 NIRNQQ  288 (292)
Q Consensus       283 n~~g~~  288 (292)
                      |.+|+.
T Consensus        83 N~~G~~   88 (97)
T d1cs6a1          83 NARGTV   88 (97)
T ss_dssp             ETTEEE
T ss_pred             ECCCEE
Confidence            999986

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.6e-14  Score=90.09  Aligned_cols=94  Identities=19%  Similarity=0.291  Sum_probs=69.5

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCC-eeEEEECCeEEeeccC-CCcceeEEe---eecEEEEccCC-CCCCeE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPG-NAYGHLHVT---QEGTLRIQGVQ-KEDAGF  108 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~-~~~~~~~~~---~~~~l~i~~~~-~~d~g~  108 (292)
                      .||.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++........ ....+....   ....|.|.++. .+|+|.
T Consensus         1 GPP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~   80 (101)
T d3b5ha1           1 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ   80 (101)
T ss_dssp             CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEE
T ss_pred             CCceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEE
Confidence            47888888888889999999999999998877 7999997533221111 111222222   23479999998 579999


Q ss_pred             EEEEEEeCCcCeeEEEEEEE
Q psy15128        109 FVCSALSVAGSTTVRAFLQV  128 (292)
Q Consensus       109 Y~C~~~~~~~~~~~~~~l~v  128 (292)
                      |+|.|.|..|.....+.|.|
T Consensus        81 Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          81 YRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             EEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEEEE
Confidence            99999999998877777665

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.55  E-value=2.1e-15  Score=93.09  Aligned_cols=72  Identities=21%  Similarity=0.351  Sum_probs=57.5

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +....+.+|+.+.|.|.+ .|.|.|.+.|++++..+..    .. .        .....|.|..+...|+|.|+|.|+|.
T Consensus        12 p~~~~~~~G~~v~l~C~~-~g~P~p~i~W~k~~~~~~~----~~-~--------~~~~~L~I~~v~~~D~G~Y~C~a~N~   77 (91)
T d1cs6a3          12 PADTYALTGQMVTLECFA-FGNPVPQIKWRKLDGSQTS----KW-L--------SSEPLLHIQNVDFEDEGTYECEAENI   77 (91)
T ss_dssp             CSEEEEETTCCEEEECEE-EEESCCEEEEEECCSCCSC----CC-S--------BSSSEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCcEEEecCCcEEEEEEE-EEccCCEEEEEecccccce----Ee-e--------eeeeEEEeCCCCccCCEEEEEEEEEC
Confidence            357788999999999998 8999999999997654321    11 1        11236889999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      .|+++.
T Consensus        78 ~G~~~~   83 (91)
T d1cs6a3          78 KGRDTY   83 (91)
T ss_dssp             TEEEEE
T ss_pred             CCEEEE
Confidence            998764

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.54  E-value=2.5e-14  Score=91.68  Aligned_cols=93  Identities=24%  Similarity=0.315  Sum_probs=66.0

Q ss_pred             CCcEEeC-CCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeecc---CCCc--------ceeEEeeecEEEEccCCC
Q psy15128         36 PPSFVVR-PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFP---GNAY--------GHLHVTQEGTLRIQGVQK  103 (292)
Q Consensus        36 ~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~---~~~~--------~~~~~~~~~~l~i~~~~~  103 (292)
                      +|.+... |.+..+.+|+++.|.|.+.|.|.|.+.|++++.......   +...        ..........|.|.++..
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   83 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF   83 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence            4555443 678899999999999999999999999998754321110   0000        000111235799999999


Q ss_pred             CCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128        104 EDAGFFVCSALSVAGSTTVRAFLQV  128 (292)
Q Consensus       104 ~d~g~Y~C~~~~~~~~~~~~~~l~v  128 (292)
                      +|.|.|+|.|.|..|.....+.|.|
T Consensus        84 ~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          84 EDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             HHCeEEEEEEEECCCEEEEEEEEEE
Confidence            9999999999999998888877765

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.4e-15  Score=90.92  Aligned_cols=78  Identities=18%  Similarity=0.241  Sum_probs=62.5

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +.+..+.+|+.+.|.|.+ . .|.+.+.|+++|+++..+...++.+..++.     ...|.|..+..+|+|.|+|.|.|.
T Consensus         7 l~~~~v~~G~~v~l~C~v-~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~n~   79 (90)
T d1x44a1           7 LEDTTAYCGERVELECEV-S-EDDANVKWFKNGEEIIPGPKSRYRIRVEGK-----KHILIIEGATKADAAEYSVMTTGG   79 (90)
T ss_dssp             CCCEEEETTEEEEEEEEC-S-SSSCCCEEEETTEECCCSTTCSEEEEEETT-----EEEEEEEEECTTTCSEEEEEETTE
T ss_pred             CCCEEEeCCCcEEEEEEE-C-CCCceEEEEEeecccCCCCCccEEEEEeCC-----ccEEEECccccccCEEEEEEEecc
Confidence            467889999999999997 4 477899999999998755555555544432     236899999999999999999998


Q ss_pred             ccccc
Q psy15128        285 RNQQQ  289 (292)
Q Consensus       285 ~g~~~  289 (292)
                      .+++.
T Consensus        80 ~~~a~   84 (90)
T d1x44a1          80 QSSAK   84 (90)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            77654

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.9e-15  Score=91.06  Aligned_cols=68  Identities=16%  Similarity=0.148  Sum_probs=55.9

Q ss_pred             CCCCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEE
Q psy15128        202 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIA  281 (292)
Q Consensus       202 ~g~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a  281 (292)
                      .+.+...++.+|+.+.|.|.+ .|.|.|.+.|+++|..+..                    .+.+..++..|+|.|.|+|
T Consensus         8 ~~~p~~~~~~~G~~~~l~C~a-~G~P~P~v~W~k~g~~~~~--------------------~~~~~~v~~~d~G~Y~C~A   66 (84)
T d2oz4a3           8 RDCPGNWTWPENSQQTPMCQA-WGNPLPELKCLKDGTFPLP--------------------IGESVTVTRDLEGTYLCRA   66 (84)
T ss_dssp             GGSCSEEEEETTCEECCCCCC-EEESCCEEEEEETTTEECC--------------------TTSCEECCGGGCEEEEEEE
T ss_pred             cCCCccEEEeCCCEEEEEEEE-eEcCccEEEEEEeecccee--------------------eeeeeccccCCCCEEEEEE
Confidence            334567889999999999998 9999999999999877631                    1234456788999999999


Q ss_pred             eeccccccc
Q psy15128        282 KNIRNQQQH  290 (292)
Q Consensus       282 ~n~~g~~~~  290 (292)
                      +|.+|++++
T Consensus        67 ~N~~G~~~~   75 (84)
T d2oz4a3          67 RSTQGEVTR   75 (84)
T ss_dssp             EETTEEEEE
T ss_pred             EcCCCEEEE
Confidence            999998764

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.53  E-value=7.3e-15  Score=89.68  Aligned_cols=69  Identities=13%  Similarity=0.128  Sum_probs=54.8

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      +...+.+|+.++|.|.+..+.|.+.+.|+|+|+.+....               ....|.|..+..+|+|.|+|.|.|..
T Consensus         8 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~---------------~~~~l~i~~v~~~dsG~Y~C~a~n~~   72 (88)
T d2fcba2           8 PHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSR---------------SDPNFSIPQANHSHSGDYHCTGNIGY   72 (88)
T ss_dssp             SCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEES---------------SCCEEEETTCCGGGCEEEEEEEEETT
T ss_pred             CCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccccc---------------cccccccCccCHHHCCeEEEEEEeCC
Confidence            345688999999999985566778999999998874211               11257788999999999999999999


Q ss_pred             cccc
Q psy15128        286 NQQQ  289 (292)
Q Consensus       286 g~~~  289 (292)
                      |...
T Consensus        73 g~~~   76 (88)
T d2fcba2          73 TLYS   76 (88)
T ss_dssp             EEEE
T ss_pred             CCEE
Confidence            8753

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=5.3e-14  Score=88.83  Aligned_cols=94  Identities=17%  Similarity=0.245  Sum_probs=68.2

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeec--c----CCCcceeEEeeecEEEEccCCCCCCeEEE
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMF--P----GNAYGHLHVTQEGTLRIQGVQKEDAGFFV  110 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~--~----~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~  110 (292)
                      |.+...+....+.+|+++.|.|.+.+.|.+.+.|++.+......  .    ...........++.|.|.+++.+|+|.|+
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~   81 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYT   81 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEE
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEE
Confidence            34444556678899999999999999999999999865332211  0    01111112223568999999999999999


Q ss_pred             EEEEeCCcCeeEEEEEEEEe
Q psy15128        111 CSALSVAGSTTVRAFLQVTS  130 (292)
Q Consensus       111 C~~~~~~~~~~~~~~l~v~~  130 (292)
                      |.+.|..|.......+.+.+
T Consensus        82 C~a~n~~g~~~~~~~v~v~V  101 (102)
T d1f97a1          82 CMVSEEGGQNYGEVSIHLTV  101 (102)
T ss_dssp             EEEEETTSSSEEEEEEEEEE
T ss_pred             EEEEECCCCEEEEEEEEEEE
Confidence            99999999888777776653

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.52  E-value=3.5e-14  Score=86.73  Aligned_cols=69  Identities=7%  Similarity=-0.044  Sum_probs=54.8

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      +...+.+|+.++|.|.+..+.|.+.+.|++||+.+....               ....|.|..+..+|+|.|.|.|.|..
T Consensus        10 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~---------------~~~~l~I~~v~~~dsG~Y~C~a~n~~   74 (89)
T d1fnla2          10 PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH---------------HNSDFHIPKATLKDSGSYFCRGLVGS   74 (89)
T ss_dssp             SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEE---------------ECCCEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccceec---------------cccccEECccceeccceEEEEEEeCC
Confidence            345688999999999985567777999999998874210               11257788999999999999999999


Q ss_pred             cccc
Q psy15128        286 NQQQ  289 (292)
Q Consensus       286 g~~~  289 (292)
                      |...
T Consensus        75 ~~~~   78 (89)
T d1fnla2          75 KNVS   78 (89)
T ss_dssp             EEEE
T ss_pred             CCeE
Confidence            8653

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.6e-14  Score=91.49  Aligned_cols=81  Identities=14%  Similarity=0.113  Sum_probs=58.7

Q ss_pred             CcceEEeCCCceEEEeeCCCCCC-CCeEEEeEcCeEeccC-CCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128        205 PKDTRVASGETALLECGPPKGQP-EPTLHWKKNGQFIDLE-SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK  282 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~  282 (292)
                      +....+..|+.+.|.|.+ .|.| .|.+.|+|+++.+... .........+..   .....|.|..+..+|+|.|+|.|.
T Consensus        10 ~~~~~v~~G~~v~L~C~v-~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~A~   85 (104)
T d2aw2a1          10 QSEHSILAGDPFELECPV-KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKN---ISFFILHFEPVLPNDNGSYRCSAN   85 (104)
T ss_dssp             TEEEEEETTSCEEEEEEE-ECSSSCCEEEEEEECSSCEEECCSSCEEEEECSS---CEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCeEEEeCCCeEEEEEEE-EeeCCCCEEEEEecCcccccccceeeeeEEecCC---ceEEEEEEccccHHHCCeEEEEEE
Confidence            456789999999999999 7777 5899999988765322 222222222211   112358899999999999999999


Q ss_pred             ecccccc
Q psy15128        283 NIRNQQQ  289 (292)
Q Consensus       283 n~~g~~~  289 (292)
                      |..|...
T Consensus        86 N~~G~~~   92 (104)
T d2aw2a1          86 FQSNLIE   92 (104)
T ss_dssp             ETTEEEE
T ss_pred             cCCCeEE
Confidence            9999753

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.51  E-value=9e-15  Score=93.77  Aligned_cols=88  Identities=11%  Similarity=0.179  Sum_probs=59.7

Q ss_pred             CCCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEecc----CCCceEEecCCCc--cccccccccccccccccccce
Q psy15128        203 AEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDL----ESSKRVSILGDPW--FDSRRSRSIFGSVLGALSDDQ  276 (292)
Q Consensus       203 g~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~----~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~~~g~  276 (292)
                      |.|.+.++.+|+++.|.|.+ .|.|.|.|.|++++.....    .............  ........|.|..+...|+|.
T Consensus        10 ~~P~~~tv~~G~~v~l~C~v-~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   88 (109)
T d2fdbp2          10 GLPANASTVVGGDVEFVCKV-YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGE   88 (109)
T ss_dssp             TCSCCEEECTTCCEEEEEEE-ECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEE
T ss_pred             CCCCCEEEecCCcEEEEEEE-EEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeE
Confidence            35678899999999999999 8999999999997654311    1111111111110  111223468899999999999


Q ss_pred             eEEEEeecccccccC
Q psy15128        277 WKLIAKNIRNQQQHG  291 (292)
Q Consensus       277 y~C~a~n~~g~~~~~  291 (292)
                      |+|+|+|..|.+..+
T Consensus        89 Y~C~a~N~~G~~~~~  103 (109)
T d2fdbp2          89 YTCLAGNSIGISFHS  103 (109)
T ss_dssp             EEEEEECSSCEEEEE
T ss_pred             EEEEEEECCCEEEEE
Confidence            999999999988653

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=9.5e-15  Score=89.46  Aligned_cols=74  Identities=12%  Similarity=0.077  Sum_probs=57.4

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      ....+.+|+++.|.|.+..+.|.+.|+|++.+.++.   .  .....       ....|.|..+..+|+|.|+|+|+|..
T Consensus        11 ~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~---~--~~~~~-------~~~~L~i~~v~~~D~G~Y~C~Asn~~   78 (90)
T d1gsma1          11 PVVAVALGASRQLTCRLACADRGASVQWRGLDTSLG---A--VQSDT-------GRSVLTVRNASLSAAGTRVCVGSCGG   78 (90)
T ss_dssp             SEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTC---C--EEEES-------SEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeee---e--eeccC-------ceeeEEcCccChhhCCcEEEEEEeCC
Confidence            356788999999999875689999999998776541   1  11111       12369999999999999999999999


Q ss_pred             cccccC
Q psy15128        286 NQQQHG  291 (292)
Q Consensus       286 g~~~~~  291 (292)
                      |+.+++
T Consensus        79 g~~~~s   84 (90)
T d1gsma1          79 RTFQHT   84 (90)
T ss_dssp             EEEEEE
T ss_pred             CcEEEE
Confidence            987654

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=8.4e-15  Score=92.40  Aligned_cols=77  Identities=19%  Similarity=0.263  Sum_probs=57.7

Q ss_pred             CCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        212 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      .++...|.|.+ .|.|.|.+.|+++|++|..+....+......  .......|.|..++..|+|.|+|.|+|.+|+++++
T Consensus        15 ~~~~~~i~~~v-~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~   91 (103)
T d1wwbx_          15 SDHHWCIPFTV-KGNPKPALQWFYNGAILNESKYICTKIHVTN--HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ   91 (103)
T ss_dssp             CCCEEEEEEEE-ECSSCCEEEEEETTEEECCCSSEEEEEEEEC--SSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             cceeEEEEEEE-EEeCCCEEEEEECCEEeeeeeeeeeeecccc--cccceEEEEECCCCHHhCceEEEEEeccCCEEEEE
Confidence            46667899998 8999999999999999964333333322111  11122358999999999999999999999998753

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.51  E-value=2.5e-14  Score=88.85  Aligned_cols=82  Identities=22%  Similarity=0.337  Sum_probs=65.2

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCC-eeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      .|.+...|....+.+|+.+.|.|.+.|.|.+ .+.|++++..+...   ..........+.|.|.++..+|+|.|+|.|.
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~---~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   78 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQ---EHNAALRKDEGSLVFLRPQASDEGHYQCFAE   78 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTT---TTTEEECTTSCCEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeee---cceeeecccceEEEEeccChhcCeEEEEEEE
Confidence            4677777888899999999999999998865 79999999876321   1222223345689999999999999999999


Q ss_pred             eCCcCe
Q psy15128        115 SVAGST  120 (292)
Q Consensus       115 ~~~~~~  120 (292)
                      |..|..
T Consensus        79 N~~G~~   84 (94)
T d1biha1          79 TPAGVA   84 (94)
T ss_dssp             ETTEEE
T ss_pred             eCCCEE
Confidence            998854

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1e-15  Score=94.78  Aligned_cols=75  Identities=15%  Similarity=0.089  Sum_probs=58.3

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccc-eeEEEEeec
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDD-QWKLIAKNI  284 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~a~n~  284 (292)
                      .+..+.+|+.+.|.|.+ .|.|.|.+.|++++.++...  ....       .......|.|..+..+|.| .|+|.|+|.
T Consensus        10 ~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~~~~~~~~--~~~~-------~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~   79 (92)
T d2ifga1          10 PNASVDVGDDVLLRCQV-EGRGLEQAGWILTELEQSAT--VMKS-------GGLPSLGLTLANVTSDLNRKNVTCWAEND   79 (92)
T ss_dssp             CSSCCBTTCCEEEEEEE-ECSSCCCCCEEESCCCSSEE--ECCC-------CCSSEEEEEEESCCSTTTTCCEEECCEET
T ss_pred             CCEEEeCCCEEEEeeec-cCCCCcEEEEEECCceeeee--eeee-------eeccceeEEEccccccccceEEEEEEEcC
Confidence            45678899999999998 89999999999998776321  1111       1112236889999999999 699999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      +|+++.
T Consensus        80 ~G~~~~   85 (92)
T d2ifga1          80 VGRAEV   85 (92)
T ss_dssp             TEECCE
T ss_pred             CCEEEE
Confidence            999864

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.4e-14  Score=89.40  Aligned_cols=91  Identities=16%  Similarity=0.188  Sum_probs=64.7

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeeeC-CCeeEEEECCeEEeeccCCCcceeEEe---eecEEEEccCCCCCCeEEEEEEE
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGSP-LPSVFWTQEGSQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      ++..+....+.+|+++.|.|.+.+.| .|.+.|+|++..+..............   ....|.|.+++.+|+|.|+|.|.
T Consensus         6 fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~   85 (104)
T d2aw2a1           6 YIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSAN   85 (104)
T ss_dssp             CCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             EEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEE
Confidence            33455667899999999999999988 589999998865543322222111111   12369999999999999999999


Q ss_pred             eCCcCee-EEEEEEEE
Q psy15128        115 SVAGSTT-VRAFLQVT  129 (292)
Q Consensus       115 ~~~~~~~-~~~~l~v~  129 (292)
                      |..|... ....|.|.
T Consensus        86 N~~G~~~s~~~~l~V~  101 (104)
T d2aw2a1          86 FQSNLIESHSTTLYVT  101 (104)
T ss_dssp             ETTEEEECCCEEEEEE
T ss_pred             cCCCeEEEEEEEEEEE
Confidence            9888643 35566654

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.51  E-value=1.3e-13  Score=84.20  Aligned_cols=77  Identities=13%  Similarity=0.224  Sum_probs=57.7

Q ss_pred             CCCccEEecCCcEEEEEEEee-eCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         42 RPQDQKVGLNGIASFQCVAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      .+....+.+|+.++|.|.+.+ .|.+.+.|+|++..+..          ......|.|.+++.+|+|.|+|.+.|..+..
T Consensus         8 q~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~----------~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~   77 (89)
T d1fnla2           8 QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY----------FHHNSDFHIPKATLKDSGSYFCRGLVGSKNV   77 (89)
T ss_dssp             ECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE----------EEECCCEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             ECCCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccce----------eccccccEECccceeccceEEEEEEeCCCCe
Confidence            344556889999999999864 46668999999987631          2235579999999999999999999876643


Q ss_pred             e-EEEEEEE
Q psy15128        121 T-VRAFLQV  128 (292)
Q Consensus       121 ~-~~~~l~v  128 (292)
                      . ..+.|.|
T Consensus        78 ~S~~v~itV   86 (89)
T d1fnla2          78 SSETVNITI   86 (89)
T ss_dssp             ECCCEEEEE
T ss_pred             EEeeEEEEE
Confidence            2 2344444

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=4.4e-14  Score=88.01  Aligned_cols=72  Identities=14%  Similarity=0.210  Sum_probs=56.7

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      +..+.+|++++|.|.+ .+ +++.+.|+++|+.+...  .+.......       ..|.|..+..+|+|.|+|.|.|..|
T Consensus        12 ~~~v~~g~~v~l~C~~-~~-~~~~v~W~~~~~~l~~~--~~~~~~~~~-------~~L~I~~v~~~d~G~Y~C~a~N~~g   80 (96)
T d1l6za2          12 NTTVKELDSVTLTCLS-ND-IGANIQWLFNSQSLQLT--ERMTLSQNN-------SILRIDPIKREDAGEYQCEISNPVS   80 (96)
T ss_dssp             CSEECTTSCEEEEECC-CC-SSCEEEEEETTEECCCC--TTEEEETTT-------TEEEECSCCGGGCEEEEEEEESSSC
T ss_pred             ceEEeCCCeEEEEEcc-CC-CCCCEEEEEeeeecccc--cceeccCCc-------eEEEEeccchhhceEEEEEEEeCCC
Confidence            4568899999999997 55 55799999999998633  333333321       2688999999999999999999999


Q ss_pred             ccc
Q psy15128        287 QQQ  289 (292)
Q Consensus       287 ~~~  289 (292)
                      ...
T Consensus        81 ~~~   83 (96)
T d1l6za2          81 VRR   83 (96)
T ss_dssp             CEE
T ss_pred             CeE
Confidence            764

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.5e-14  Score=90.24  Aligned_cols=89  Identities=15%  Similarity=0.279  Sum_probs=65.7

Q ss_pred             eCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeecc------CCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFP------GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~------~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      ..+..+.+.+|+++.|.|.+.+.|.|.+.|++++..+....      ...........++.|.|.+++.+|+|.|+|.+.
T Consensus         9 ~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   88 (105)
T d1nbqa1           9 SSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVS   88 (105)
T ss_dssp             CSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEE
T ss_pred             CCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEE
Confidence            34456778899999999999999999999999765432111      011111112234689999999999999999999


Q ss_pred             eCCcCeeEEEEEEEE
Q psy15128        115 SVAGSTTVRAFLQVT  129 (292)
Q Consensus       115 ~~~~~~~~~~~l~v~  129 (292)
                      |..|.....+.+.+.
T Consensus        89 n~~G~~~~~~~v~v~  103 (105)
T d1nbqa1          89 EEGGNSYGEVKVKLI  103 (105)
T ss_dssp             ETTSSCEECCEEECC
T ss_pred             ECCCCEEEEEEEEEE
Confidence            999988777666654

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.1e-14  Score=91.02  Aligned_cols=74  Identities=23%  Similarity=0.300  Sum_probs=55.7

Q ss_pred             CceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128        214 ETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG  291 (292)
Q Consensus       214 ~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~  291 (292)
                      ....|.|.+ .|.|.|.+.|++||++|............+...   ....|.|..++..|+|.|+|.|+|..|+++.+
T Consensus        18 ~~~~i~~~v-~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~   91 (105)
T d1wwca_          18 LEHCIEFVV-RGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEI---SEGCLLFNKPTHYNNGNYTLIAKNPLGTANQT   91 (105)
T ss_dssp             CEEEEEEEE-ECSSCCEEEEEETTEECCCSSSEEEEEEECSSE---EEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             EEEEEEEEE-EEeCCCeEEEEeCccccCCCcceeeeEEeeccc---ceEEEEEeecccccceEEEEEEEcCCCEEEEE
Confidence            345578898 899999999999999996444433333333221   12358899999999999999999999998753

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=7e-14  Score=89.58  Aligned_cols=86  Identities=20%  Similarity=0.313  Sum_probs=61.4

Q ss_pred             ccEEecCCcEEEEEEEe-eeCCCeeEEEECCeEEeeccCCCc------ceeEEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         45 DQKVGLNGIASFQCVAE-GSPLPSVFWTQEGSQVLMFPGNAY------GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      ...+.+|+++.|.|.+. +.|.+.+.|++++..+........      ........+.|.|.+++.+|+|.|+|.|.|..
T Consensus        11 ~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~   90 (110)
T d1f97a2          11 PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY   90 (110)
T ss_dssp             CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSS
T ss_pred             CCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECC
Confidence            45688999999999985 789999999999876643221111      11111223479999999999999999999999


Q ss_pred             cCeeEEEEEEEEe
Q psy15128        118 GSTTVRAFLQVTS  130 (292)
Q Consensus       118 ~~~~~~~~l~v~~  130 (292)
                      |....+..+.+.+
T Consensus        91 G~~~~s~~v~l~V  103 (110)
T d1f97a2          91 GTAMRSEAAHMDA  103 (110)
T ss_dssp             SCCEECCCEEEEE
T ss_pred             CcEEEEEEEEEEE
Confidence            8876655554443

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.49  E-value=4.5e-14  Score=88.16  Aligned_cols=82  Identities=21%  Similarity=0.397  Sum_probs=63.7

Q ss_pred             CCcEEeCCCccEEecC---CcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEE
Q psy15128         36 PPSFVVRPQDQKVGLN---GIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS  112 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g---~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~  112 (292)
                      +|.+...|....+.+|   ++++|.|.+.|.|.+.+.|++++..+.....   ..........|.|..+..+|.|.|+|.
T Consensus         4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~---~~~~~~~~~~l~i~~~~~~d~G~Y~C~   80 (97)
T d1cs6a1           4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPD---SRYRLVAGDLVISNPVKAKDAGSYQCV   80 (97)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTT---SSEEEETTEEEEESCCHHHHCEEEEEE
T ss_pred             CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCC---ceEEeeeeeEEEEecccccCCEEEEEE
Confidence            4667777777776665   7899999999999999999999987743221   223333445788888999999999999


Q ss_pred             EEeCCcCe
Q psy15128        113 ALSVAGST  120 (292)
Q Consensus       113 ~~~~~~~~  120 (292)
                      |.|..|..
T Consensus        81 a~N~~G~~   88 (97)
T d1cs6a1          81 ATNARGTV   88 (97)
T ss_dssp             EEETTEEE
T ss_pred             EEECCCEE
Confidence            99998864

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.7e-14  Score=87.86  Aligned_cols=73  Identities=10%  Similarity=0.054  Sum_probs=55.6

Q ss_pred             CcceEEeCCCceEEEeeCCCCCC-CCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128        205 PKDTRVASGETALLECGPPKGQP-EPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN  283 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n  283 (292)
                      +....+.+|+.+.|.|.+ .+.| ++.|+|+|+|.++..  ..+.....+        ..|.|..+..+|+|.|+|.|.|
T Consensus        13 ~~~v~~~~G~~v~L~C~~-~g~~~~~~i~W~k~~~~l~~--~~~~~~~~~--------~~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T d1n26a1          13 RGVLTSLPGDSVTLTCPG-VEPEDNATVHWVLRKPAAGS--HPSRWAGMG--------RRLLLRSVQLHDSGNYSCYRAG   81 (93)
T ss_dssp             TTEEEECTTCCEEEECTT-SCTTCCSEEEEEEECSSSSC--CCEEEEEES--------SEEEECSCCGGGCEEEEEESSS
T ss_pred             CCCEEEeCCCcEEEEEEe-ecCCCCceEEEEEccccccc--eeeEEecCC--------CEEEECCCChhcCEEEEEEECC
Confidence            346788899999999998 5554 569999999988852  233322222        2699999999999999999999


Q ss_pred             ccccc
Q psy15128        284 IRNQQ  288 (292)
Q Consensus       284 ~~g~~  288 (292)
                      ..+..
T Consensus        82 ~~~~t   86 (93)
T d1n26a1          82 RPAGT   86 (93)
T ss_dssp             SCSCE
T ss_pred             ccccE
Confidence            86543

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.49  E-value=1.4e-13  Score=83.82  Aligned_cols=78  Identities=13%  Similarity=0.169  Sum_probs=58.3

Q ss_pred             CCCccEEecCCcEEEEEEEee-eCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         42 RPQDQKVGLNGIASFQCVAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      .+....+.+|+.++|.|.+.+ .|.+.+.|+|++..+..          ......|.|.+++.+|+|.|+|.+.|..+..
T Consensus         6 q~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~----------~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~   75 (88)
T d2fcba2           6 QTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKF----------SRSDPNFSIPQANHSHSGDYHCTGNIGYTLY   75 (88)
T ss_dssp             ECSCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEE----------ESSCCEEEETTCCGGGCEEEEEEEEETTEEE
T ss_pred             eCCCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccc----------cccccccccCccCHHHCCeEEEEEEeCCCCE
Confidence            334456889999999999865 46668999999987632          1224579999999999999999999987653


Q ss_pred             e-EEEEEEEE
Q psy15128        121 T-VRAFLQVT  129 (292)
Q Consensus       121 ~-~~~~l~v~  129 (292)
                      . ..+.|.|.
T Consensus        76 ~S~~v~l~V~   85 (88)
T d2fcba2          76 SSKPVTITVQ   85 (88)
T ss_dssp             ECCCEEEEEC
T ss_pred             EeeeEEEEEe
Confidence            2 33455543

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.2e-14  Score=87.58  Aligned_cols=75  Identities=19%  Similarity=0.227  Sum_probs=57.0

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      ...+.+|+.+.|.|.+ .+ |++.+.|++||+.|..+.........+      ....|.|..+...|+|.|+|.|.|..+
T Consensus        15 ~~~v~~G~~v~l~c~v-~~-p~~~v~W~k~g~~i~~~~~~~~~~~~~------~~~~L~I~~~~~~D~G~Y~c~a~n~~~   86 (94)
T d1pd6a_          15 AYQVSKGHKIRLTVEL-AD-HDAEVKWLKNGQEIQMSGSKYIFESIG------AKRTLTISQCSLADDAAYQCVVGGEKC   86 (94)
T ss_dssp             EEEEETTSCEEEEEEC-SS-SSSCCEEEESSSEECCCSSSSEEEEET------TEEEEEECSCSSSSCEEEEEEETTEEE
T ss_pred             CEEECcCCeEEEEEEE-CC-CCceEEEEEcCccceeeeeeEeeeccC------CeEEeecCCCCceecEEEEEEEeeEEE
Confidence            4578899999999997 54 788999999999996433222222222      123689999999999999999999877


Q ss_pred             ccc
Q psy15128        287 QQQ  289 (292)
Q Consensus       287 ~~~  289 (292)
                      +..
T Consensus        87 s~~   89 (94)
T d1pd6a_          87 STE   89 (94)
T ss_dssp             CCE
T ss_pred             EEE
Confidence            653

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.6e-14  Score=89.92  Aligned_cols=83  Identities=20%  Similarity=0.144  Sum_probs=61.4

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEe---c-C-CCccccccccccccccccccccc-eeEEE
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSI---L-G-DPWFDSRRSRSIFGSVLGALSDD-QWKLI  280 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~---~-~-~~~~~~~~~~~l~i~~~~~~~~g-~y~C~  280 (292)
                      ...+..|+.+.|.|.+ .+.|.+.+.|+++|..+..........   . . ...........|.|..++.+|.| .|+|.
T Consensus        11 ~i~v~~G~~v~l~C~v-~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~   89 (107)
T d1iray3          11 TMEVDLGSQIQLICNV-TGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCF   89 (107)
T ss_dssp             EEECCTTCCEEEEEEE-EECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEE
T ss_pred             EEEEeCCCEEEEEEEe-ccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEE
Confidence            3457789999999999 899999999999999886444332211   1 1 11111122346999999999999 59999


Q ss_pred             Eeeccccccc
Q psy15128        281 AKNIRNQQQH  290 (292)
Q Consensus       281 a~n~~g~~~~  290 (292)
                      |+|..|.++.
T Consensus        90 A~N~~G~~~~   99 (107)
T d1iray3          90 AKNTHGIDAA   99 (107)
T ss_dssp             EECSSCEEEE
T ss_pred             EEeCCCeEEE
Confidence            9999999864

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.8e-14  Score=95.57  Aligned_cols=85  Identities=15%  Similarity=0.190  Sum_probs=60.6

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecC-------------------CCcc---cccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILG-------------------DPWF---DSRRSR  262 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~-------------------~~~~---~~~~~~  262 (292)
                      +..+.+.+|+.++|.|.+ .|.|.|.+.|++++..+............                   ...+   ......
T Consensus        16 ~~~v~v~~G~~v~L~C~v-~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   94 (130)
T d1gxea_          16 PDTIVVVAGNKLRLDVPI-SGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRS   94 (130)
T ss_dssp             CCEEEESSSSCCCCEEEC-CSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEE
T ss_pred             CCCEEEEcCCeEEEEEEE-EEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEE
Confidence            357789999999999998 89999999999988766321111100000                   0000   011223


Q ss_pred             ccccccccccccceeEEEEeeccccccc
Q psy15128        263 SIFGSVLGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       263 ~l~i~~~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      .|.|..+..+|+|.|+|.|+|.+|+++.
T Consensus        95 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~  122 (130)
T d1gxea_          95 IFTVEGAEKEDEGVYTVTVKNPVGEDQV  122 (130)
T ss_dssp             EEECSCCCTTTCEEEEEEEECSSCEEEE
T ss_pred             EEEECcCChhcCEEEEEEEEECCCEEEE
Confidence            6999999999999999999999999864

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.3e-14  Score=87.29  Aligned_cols=72  Identities=25%  Similarity=0.323  Sum_probs=58.8

Q ss_pred             CCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeE
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV  122 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~  122 (292)
                      +....+.+|+.+.|.|.+.|.|.|.+.|+|++..+..               .+.+.+++.+|+|.|+|.|.|..|....
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~---------------~~~~~~v~~~d~G~Y~C~A~N~~G~~~~   75 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP---------------IGESVTVTRDLEGTYLCRARSTQGEVTR   75 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECC---------------TTSCEECCGGGCEEEEEEEEETTEEEEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeecccee---------------eeeeeccccCCCCEEEEEEEcCCCEEEE
Confidence            4567788999999999999999999999999876531               1124467889999999999999998777


Q ss_pred             EEEEEEE
Q psy15128        123 RAFLQVT  129 (292)
Q Consensus       123 ~~~l~v~  129 (292)
                      .+.|.|.
T Consensus        76 ~~~l~V~   82 (84)
T d2oz4a3          76 EVTVNVL   82 (84)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            7777664

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.47  E-value=9.7e-15  Score=89.39  Aligned_cols=76  Identities=20%  Similarity=0.180  Sum_probs=60.3

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +.+..+.+|+++.|.|.+ . .|.+.+.|++||+++..+  .++.+..++.     ...|.|..+...|+|.|+|.|.|.
T Consensus         8 l~d~~v~~G~~~~~~c~v-s-~p~~~v~W~k~g~~i~~~--~~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~c~a~n~   78 (89)
T d1tiua_           8 LYGVEVFVGETAHFEIEL-S-EPDVHGQWKLKGQPLTAS--PDCEIIEDGK-----KHILILHNCQLGMTGEVSFQAANA   78 (89)
T ss_dssp             CCCEEEETTSCCCEEEBC-S-SSSCCCBCCSSSCCCCSS--SSCEEEECSS-----CEEEECCSCCSCCCSEECCBCSSC
T ss_pred             CcCEEEeCCCcEEEEEEE-C-CCCcEEEEEEeeeecccc--eeEEEEeece-----eEEEEEcCCChhcCEEEEEEECce
Confidence            467899999999999996 4 688899999999999644  3333333332     236999999999999999999998


Q ss_pred             ccccc
Q psy15128        285 RNQQQ  289 (292)
Q Consensus       285 ~g~~~  289 (292)
                      .+++.
T Consensus        79 ~~sa~   83 (89)
T d1tiua_          79 KSAAN   83 (89)
T ss_dssp             BCCEE
T ss_pred             EEEEE
Confidence            77654

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=6.1e-14  Score=92.93  Aligned_cols=88  Identities=20%  Similarity=0.378  Sum_probs=64.6

Q ss_pred             CCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccC------------------------CCcceeE---Eeeec
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPG------------------------NAYGHLH---VTQEG   94 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~------------------------~~~~~~~---~~~~~   94 (292)
                      .+..+.+.+|+.++|.|.+.|.|.+.+.|++++..+.....                        ....+..   .....
T Consensus        15 ~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   94 (130)
T d1gxea_          15 IPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRS   94 (130)
T ss_dssp             CCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEE
T ss_pred             CCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEE
Confidence            34567888999999999999999999999997654321100                        0001111   11234


Q ss_pred             EEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128         95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus        95 ~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      .|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus        95 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          95 IFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             EEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            79999999999999999999999988777777663

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.6e-14  Score=91.57  Aligned_cols=85  Identities=9%  Similarity=0.066  Sum_probs=60.9

Q ss_pred             CcceEEeCCCceEEEeeCCCCCC---CCeEEEeEcCeEec-cCCCceEEecCCC-ccccccccccccccccccccceeEE
Q psy15128        205 PKDTRVASGETALLECGPPKGQP---EPTLHWKKNGQFID-LESSKRVSILGDP-WFDSRRSRSIFGSVLGALSDDQWKL  279 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~g~~~~-~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~C  279 (292)
                      |.+..+.+|++++|.|.+ .|.|   .|.+.|++++.... .....++...... .........|.|..++..|+|.|+|
T Consensus        11 P~~~~v~~G~~v~l~C~v-~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   89 (110)
T d2avga1          11 PQDGEVTVGGSITFSARV-AGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRC   89 (110)
T ss_dssp             CCCEEEETTSEEEEEEEE-ECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEE
T ss_pred             CCeEEEECCCCEEEEEee-cCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEE
Confidence            567889999999999998 7877   57899999875432 2223333322111 0111223468999999999999999


Q ss_pred             EEeeccccccc
Q psy15128        280 IAKNIRNQQQH  290 (292)
Q Consensus       280 ~a~n~~g~~~~  290 (292)
                      .|+|..|.++.
T Consensus        90 ~a~N~~G~~~~  100 (110)
T d2avga1          90 EVSTKDKFDCS  100 (110)
T ss_dssp             EEEETTEEEEE
T ss_pred             EEEECCCeEEE
Confidence            99999999864

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.9e-14  Score=91.29  Aligned_cols=94  Identities=19%  Similarity=0.328  Sum_probs=67.5

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEE-eeeCCCeeEEEECCeEEeeccCCCc-----ceeEEeeecEEEEccCCCCCCeEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVA-EGSPLPSVFWTQEGSQVLMFPGNAY-----GHLHVTQEGTLRIQGVQKEDAGFF  109 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~-----~~~~~~~~~~l~i~~~~~~d~g~Y  109 (292)
                      ||.+........+.+|+.++|.|.+ .|.|.+.+.|++++..+........     ........+.|.|.+++.+|.|.|
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y   81 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY   81 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCE
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEE
Confidence            4554445556678899999999987 4789999999999887643221111     001111235799999999999999


Q ss_pred             EEEEEeCCcCeeEEEEEEEE
Q psy15128        110 VCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus       110 ~C~~~~~~~~~~~~~~l~v~  129 (292)
                      +|.+.|..|....+..+.+.
T Consensus        82 ~C~a~N~~G~~~~s~~v~v~  101 (104)
T d1nbqa2          82 SCEARNGYGTPMTSNAVRME  101 (104)
T ss_dssp             EEEEECSSSCCEECCCBCCE
T ss_pred             EEEEEECCCceEEEEEEEEE
Confidence            99999999987766655544

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=9.9e-14  Score=86.82  Aligned_cols=72  Identities=15%  Similarity=0.184  Sum_probs=57.5

Q ss_pred             ceEEeCCCceEEEe------eCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEE
Q psy15128        207 DTRVASGETALLEC------GPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLI  280 (292)
Q Consensus       207 ~~~~~~g~~~~l~C------~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~  280 (292)
                      ...+..|....|.|      .+ .+.|.|.+.|++||++|.. .+.+....+.         .|.|..+..+|+|.|+|.
T Consensus         8 ~q~~~~g~~~~l~Cp~~~~~~~-~~~p~P~i~W~kdg~~l~~-~~~~~~~~~~---------~L~I~~v~~~D~G~Y~C~   76 (103)
T d1iray2           8 KQKLPVAGDGGLVCPYMEFFKN-ENNELPKLQWYKDCKPLLL-DNIHFSGVKD---------RLIVMNVAEKHRGNYTCH   76 (103)
T ss_dssp             EEEEESSSCEEEECTTGGGGCB-TTTBCCCCEEEETTEECCC-CSSSEEEETT---------EEEESSCCGGGCEEEEEE
T ss_pred             EEEEecCCCEEEEcCCcccccc-CCCCCCEEEEEECCccccC-CCcEEEecCC---------EEEEcccccccCcEEEEE
Confidence            35688999999999      44 7899999999999999963 3333333332         588999999999999999


Q ss_pred             Eeecccccc
Q psy15128        281 AKNIRNQQQ  289 (292)
Q Consensus       281 a~n~~g~~~  289 (292)
                      |.|..|...
T Consensus        77 a~n~~~g~~   85 (103)
T d1iray2          77 ASYTYLGKQ   85 (103)
T ss_dssp             EEEEETTEE
T ss_pred             EEECcCCEE
Confidence            999887543

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1e-13  Score=87.33  Aligned_cols=79  Identities=18%  Similarity=0.230  Sum_probs=56.7

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCC-eEEEeEcCeEe----ccCCCceEEecCCCcccccccccccccccc-ccccceeEE
Q psy15128        206 KDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFI----DLESSKRVSILGDPWFDSRRSRSIFGSVLG-ALSDDQWKL  279 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C  279 (292)
                      ....+.+|+.+.|.|.+ .+.|++ .+.|++++...    ......++.+....     ....|.|..+. ..|+|.|+|
T Consensus        10 ~~~~v~~G~~v~l~C~v-~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~~D~G~Y~C   83 (101)
T d3b5ha1          10 SSEHINEGETAMLVCKS-ESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ-----GRSELHIENLNMEADPGQYRC   83 (101)
T ss_dssp             SEEEECTTSCEEEEEEC-CCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEET-----TEEEEEECSCCTTTSSEEEEE
T ss_pred             CcEEECcCCeEEEEEEE-EecCCeeEEEEEeccceeeeecccCCCceEEEEeCC-----CEEEEEEeccccccCCEEEEE
Confidence            45678899999999998 788877 79999965322    22223333332221     22368888887 579999999


Q ss_pred             EEeeccccccc
Q psy15128        280 IAKNIRNQQQH  290 (292)
Q Consensus       280 ~a~n~~g~~~~  290 (292)
                      .|+|..|+++.
T Consensus        84 ~A~N~~G~~~~   94 (101)
T d3b5ha1          84 NGTSSKGSDQA   94 (101)
T ss_dssp             EEEETTEEEEE
T ss_pred             EEEECCCEEEE
Confidence            99999999864

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.3e-13  Score=84.72  Aligned_cols=80  Identities=18%  Similarity=0.283  Sum_probs=61.7

Q ss_pred             ccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEE
Q psy15128         45 DQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA  124 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~  124 (292)
                      ...+.+|+++.|.|.+.+ |.+.+.|++++..+...    ..+.....++.|.|.+++.+|+|.|+|.|.|..+......
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~----~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~   80 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAE----SPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQ   80 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCC----SSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEE
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceee----eeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEE
Confidence            356789999999999988 66799999998876422    2233344566899999999999999999999888766555


Q ss_pred             EEEEE
Q psy15128        125 FLQVT  129 (292)
Q Consensus       125 ~l~v~  129 (292)
                      .+.+.
T Consensus        81 ~l~~~   85 (92)
T d1olza1          81 VVAKH   85 (92)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            54443

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.9e-14  Score=90.66  Aligned_cols=84  Identities=11%  Similarity=0.080  Sum_probs=59.0

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCC-CccccccccccccccccccccceeEEEEeec
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD-PWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +...+.+|+++.|.|.+ .+.|.|.+.|++++..+............. ..........|.|..+..+|+|.|+|.|+|.
T Consensus        12 ~~v~v~~g~~v~L~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   90 (105)
T d1nbqa1          12 PEVRIPENNPVKLSCAY-SGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEE   90 (105)
T ss_dssp             SBCCEETTCCCEEECEE-ESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEET
T ss_pred             CeEEEeCCCeEEEEEEe-CCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEEC
Confidence            56778999999999998 899999999999765543111111111111 1111111236899999999999999999999


Q ss_pred             cccccc
Q psy15128        285 RNQQQH  290 (292)
Q Consensus       285 ~g~~~~  290 (292)
                      .|.+..
T Consensus        91 ~G~~~~   96 (105)
T d1nbqa1          91 GGNSYG   96 (105)
T ss_dssp             TSSCEE
T ss_pred             CCCEEE
Confidence            998754

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1e-13  Score=84.69  Aligned_cols=68  Identities=12%  Similarity=0.075  Sum_probs=54.1

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      +...+.+|+.++|.|.+..+.|+..+.|+|||+.+....               ....|.|..++.+|+|.|+|.|.|..
T Consensus         8 p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~---------------~~~~l~i~~~~~~dsG~Y~C~a~n~~   72 (89)
T d1f2qa2           8 SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY---------------ENHNISITNATVEDSGTYYCTGKVWQ   72 (89)
T ss_dssp             SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC---------------CSSEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc---------------ccceEEEeeeeeecCcEEEEEEEeCC
Confidence            345688999999999985555677999999999874211               11257788999999999999999988


Q ss_pred             ccc
Q psy15128        286 NQQ  288 (292)
Q Consensus       286 g~~  288 (292)
                      |..
T Consensus        73 ~~~   75 (89)
T d1f2qa2          73 LDY   75 (89)
T ss_dssp             EEE
T ss_pred             CCe
Confidence            865

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.4e-13  Score=82.66  Aligned_cols=83  Identities=19%  Similarity=0.251  Sum_probs=60.2

Q ss_pred             CCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCee
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT  121 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~  121 (292)
                      .+.+..+.+|+.+.|.|.+. .|.+.+.|++++..+..................|.|.++..+|+|.|+|.+.|    ..
T Consensus         6 ~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~   80 (90)
T d1x44a1           6 QLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----GQ   80 (90)
T ss_dssp             CCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----EE
T ss_pred             CCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec----ce
Confidence            45678899999999999984 58889999999987643322222122222334899999999999999999855    34


Q ss_pred             EEEEEEEE
Q psy15128        122 VRAFLQVT  129 (292)
Q Consensus       122 ~~~~l~v~  129 (292)
                      ..+.|.|.
T Consensus        81 ~~a~l~V~   88 (90)
T d1x44a1          81 SSAKLSVD   88 (90)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            55666654

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=9.8e-14  Score=89.30  Aligned_cols=87  Identities=11%  Similarity=0.072  Sum_probs=60.9

Q ss_pred             CCcceEEeCCCceEEEeeCCCCCC---CCeEEEeEcCeEe-ccCCCceEEecCCCc-cccccccccccccccccccceeE
Q psy15128        204 EPKDTRVASGETALLECGPPKGQP---EPTLHWKKNGQFI-DLESSKRVSILGDPW-FDSRRSRSIFGSVLGALSDDQWK  278 (292)
Q Consensus       204 ~~~~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~g~~~-~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~~~g~y~  278 (292)
                      .|.+..+.+|+.++|.|.+ .|.|   .|.+.|+|++... ......++....... ........|.|..+...|+|.|+
T Consensus         6 ~P~~~~v~~G~~v~l~C~v-~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   84 (113)
T d2dava1           6 KPQGGTVKVGEDITFIAKV-KAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYR   84 (113)
T ss_dssp             CCCCCEEETTCCEEEEEEE-ECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEE
T ss_pred             CCceEEEeCCCEEEEEEEE-ccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEE
Confidence            3567899999999999998 7877   5799999987533 222222222211100 01112235889999999999999


Q ss_pred             EEEeecccccccC
Q psy15128        279 LIAKNIRNQQQHG  291 (292)
Q Consensus       279 C~a~n~~g~~~~~  291 (292)
                      |.|+|..|.++.+
T Consensus        85 C~a~N~~G~~~~~   97 (113)
T d2dava1          85 CEVTYKDKFDSCS   97 (113)
T ss_dssp             EEEECSSCEEEEC
T ss_pred             EEEEeCCCEEEEE
Confidence            9999999988654

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=7.6e-14  Score=85.79  Aligned_cols=78  Identities=14%  Similarity=0.125  Sum_probs=60.8

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCC-CeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPL-PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA  113 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~  113 (292)
                      .+|.+...+....+.+|+.+.|.|.+.+.|. +.|.|+|++..+.     ...+.....+..|.|.+++.+|+|.|+|.+
T Consensus         5 ~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~-----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   79 (93)
T d1n26a1           5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAG-----SHPSRWAGMGRRLLLRSVQLHDSGNYSCYR   79 (93)
T ss_dssp             CCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSS-----CCCEEEEEESSEEEECSCCGGGCEEEEEES
T ss_pred             CCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEcccccc-----ceeeEEecCCCEEEECCCChhcCEEEEEEE
Confidence            3566667777788899999999999988664 5899999987652     122333445678999999999999999998


Q ss_pred             EeCC
Q psy15128        114 LSVA  117 (292)
Q Consensus       114 ~~~~  117 (292)
                      .|..
T Consensus        80 ~n~~   83 (93)
T d1n26a1          80 AGRP   83 (93)
T ss_dssp             SSSC
T ss_pred             CCcc
Confidence            7654

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.1e-14  Score=88.62  Aligned_cols=78  Identities=10%  Similarity=0.121  Sum_probs=60.3

Q ss_pred             CCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCC--CceEEecCCCccccccccccccccccccccceeEEEE
Q psy15128        204 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES--SKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIA  281 (292)
Q Consensus       204 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a  281 (292)
                      .+....+.+|+.+.|.|.+..+.|.+.|.|+++|..+....  ..++....         ..|.|..+...|+|.|+|.|
T Consensus         8 ~~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~---------~~L~I~~v~~~D~G~Y~C~a   78 (101)
T d1iray1           8 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK---------EKLWFVPAKVEDSGHYYCVV   78 (101)
T ss_dssp             CCCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEET---------TEEEETTCCGGGCEEEEEEE
T ss_pred             CCcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccC---------CEEEeccceecCCEEEEEEE
Confidence            34567788999999999985678999999999986654222  22233222         26999999999999999999


Q ss_pred             eeccccccc
Q psy15128        282 KNIRNQQQH  290 (292)
Q Consensus       282 ~n~~g~~~~  290 (292)
                      .|..|..+.
T Consensus        79 ~N~~g~~~~   87 (101)
T d1iray1          79 RNSSYCLRI   87 (101)
T ss_dssp             EETTEEEEE
T ss_pred             ECCCCeEEE
Confidence            999998764

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.9e-13  Score=85.10  Aligned_cols=91  Identities=23%  Similarity=0.234  Sum_probs=60.6

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEE-CCeEEeeccCCCccee-EEeeecEEEEccCCCCCCeEEEEEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQ-EGSQVLMFPGNAYGHL-HVTQEGTLRIQGVQKEDAGFFVCSA  113 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~C~~  113 (292)
                      .|.+. .+.+..+.+|++++|.|.+.|.|.|.+.|++ ....... ........ .....+.|.|.++..+|+|.|+|.+
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   79 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDA-PLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMI   79 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCC-CEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeee-cCCceeEEEeecCceEEEECCCCHHHCeEEEEEE
Confidence            46665 5778899999999999999998877655433 2211110 00000000 0112347999999999999999999


Q ss_pred             EeCCcCeeEE-EEEEE
Q psy15128        114 LSVAGSTTVR-AFLQV  128 (292)
Q Consensus       114 ~~~~~~~~~~-~~l~v  128 (292)
                      .|..|..... +.|.|
T Consensus        80 ~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          80 RTEGGVGISNYAELVV   95 (96)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EeCCCeEEEEEEEEEE
Confidence            9998875443 56654

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.4e-13  Score=85.35  Aligned_cols=92  Identities=18%  Similarity=0.206  Sum_probs=62.6

Q ss_pred             EeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeE----EeeecEEEEccCCCCCCeE
Q psy15128         33 VHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLH----VTQEGTLRIQGVQKEDAGF  108 (292)
Q Consensus        33 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~g~  108 (292)
                      |..||.+......   ..+....|.|.+.|.|.|.+.|++++..+....  ......    ....+.|.|.+++.+|+|.
T Consensus         2 V~~PP~i~~~~~~---~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   76 (105)
T d1wwca_           2 VYYPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESK--IIHVEYYQEGEISEGCLLFNKPTHYNNGN   76 (105)
T ss_dssp             CCCCCCCCCCCCC---CCCCEEEEEEEEECSSCCEEEEEETTEECCCSS--SEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred             EEcCCeeEEeCCC---EEEEEEEEEEEEEEeCCCeEEEEeCccccCCCc--ceeeeEEeecccceEEEEEeecccccceE
Confidence            4556665432211   233445688899999999999999998763221  111111    1123469999999999999


Q ss_pred             EEEEEEeCCcCeeEEEEEEEE
Q psy15128        109 FVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus       109 Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      |+|.|.|..|....++.|.|.
T Consensus        77 Y~C~a~N~~G~~~~~~~v~V~   97 (105)
T d1wwca_          77 YTLIAKNPLGTANQTINGHFL   97 (105)
T ss_dssp             EEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEEEcCCCEEEEEEEEEEE
Confidence            999999999988777766654

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6e-13  Score=83.70  Aligned_cols=79  Identities=14%  Similarity=0.191  Sum_probs=59.3

Q ss_pred             cCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeE----EeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEE
Q psy15128         50 LNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLH----VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF  125 (292)
Q Consensus        50 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~  125 (292)
                      .++...|.|.+.|.|.|.+.|++++..+..... ......    ....+.|.|.+++.+|.|.|+|.|.|..|.....+.
T Consensus        15 ~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   93 (103)
T d1wwbx_          15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKY-ICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEECCCSS-EEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             cceeEEEEEEEEEeCCCEEEEEECCEEeeeeee-eeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEE
Confidence            567778999999999999999999988742111 000111    112347999999999999999999999998877777


Q ss_pred             EEEE
Q psy15128        126 LQVT  129 (292)
Q Consensus       126 l~v~  129 (292)
                      |.|.
T Consensus        94 v~V~   97 (103)
T d1wwbx_          94 AHFM   97 (103)
T ss_dssp             ECCS
T ss_pred             EEEE
Confidence            6654

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.1e-13  Score=86.18  Aligned_cols=77  Identities=8%  Similarity=-0.020  Sum_probs=52.7

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeE---cCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEE
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKK---NGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIA  281 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a  281 (292)
                      +.+..+.+|+++.|.|.+ .|.|.|.+.|++   ++..+.  ...........     ....|.|..+..+|+|.|+|+|
T Consensus         8 ~~~~~v~~G~~v~l~C~~-~g~p~p~~~~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a   79 (96)
T d2c9aa1           8 IQNVEVNAGQFATFQCSA-IGRTVAGDRLWLQGIDVRDAP--LKEIKVTSSRR-----FIASFNVVNTTKRDAGKYRCMI   79 (96)
T ss_dssp             CCCEEECSSSCEEEEEEE-ESCCCSSCEEEEEETTBCCCC--EEEEEEEETTE-----EEEEEEECSCCGGGCSEEEEEE
T ss_pred             cCCEEEeCCCEEEEEEEE-eecCCCcEEEEEeeeeeeeec--CCceeEEEeec-----CceEEEECCCCHHHCeEEEEEE
Confidence            357789999999999998 888877544332   222221  11112222221     1225899999999999999999


Q ss_pred             eecccccc
Q psy15128        282 KNIRNQQQ  289 (292)
Q Consensus       282 ~n~~g~~~  289 (292)
                      .|..|++.
T Consensus        80 ~N~~G~~~   87 (96)
T d2c9aa1          80 RTEGGVGI   87 (96)
T ss_dssp             EETTEEEE
T ss_pred             EeCCCeEE
Confidence            99999863

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.41  E-value=9.2e-13  Score=79.43  Aligned_cols=71  Identities=18%  Similarity=0.249  Sum_probs=56.8

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCe-eEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPS-VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      +|.+.+.|....+.+|++++|.|.+.+.|.+. +.|++++..+.            .....|.|.+++.+|+|.|+|.+.
T Consensus         5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~------------~~~~~l~i~~~~~~d~G~Y~C~a~   72 (84)
T d1fnla1           5 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS------------SQASSYFIDAATVNDSGEYRCQTN   72 (84)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEE------------SSCSEEEESSCCGGGCEEEEEECS
T ss_pred             CCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeee------------ecceeeEecCCcccCCEEEEEEcc
Confidence            46667778788899999999999999887764 66778776552            124579999999999999999987


Q ss_pred             eCCc
Q psy15128        115 SVAG  118 (292)
Q Consensus       115 ~~~~  118 (292)
                      +...
T Consensus        73 ~s~~   76 (84)
T d1fnla1          73 LSTL   76 (84)
T ss_dssp             SSCC
T ss_pred             CCCc
Confidence            6543

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.5e-12  Score=82.79  Aligned_cols=90  Identities=19%  Similarity=0.184  Sum_probs=63.2

Q ss_pred             CcEEeCCC-ccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcce----------eEEeeecEEEEccCCCCC
Q psy15128         37 PSFVVRPQ-DQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGH----------LHVTQEGTLRIQGVQKED  105 (292)
Q Consensus        37 p~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~----------~~~~~~~~l~i~~~~~~d  105 (292)
                      |.+..... ...+..|+++.|.|.+.+.|.+.+.|++++..+..........          ......+.|.|.+++.+|
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF   81 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence            44443332 3456789999999999999999999999987664222111100          011123479999999999


Q ss_pred             Ce-EEEEEEEeCCcCeeEEEEE
Q psy15128        106 AG-FFVCSALSVAGSTTVRAFL  126 (292)
Q Consensus       106 ~g-~Y~C~~~~~~~~~~~~~~l  126 (292)
                      .| .|+|.|.|..|.....+.|
T Consensus        82 ~g~~Y~C~A~N~~G~~~~~i~L  103 (107)
T d1iray3          82 YKHPFTCFAKNTHGIDAAYIQL  103 (107)
T ss_dssp             GSSCEEEEEECSSCEEEEEEEE
T ss_pred             CCcEEEEEEEeCCCeEEEEEEE
Confidence            99 5999999999977666554

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.40  E-value=2.6e-13  Score=85.75  Aligned_cols=78  Identities=19%  Similarity=0.174  Sum_probs=60.6

Q ss_pred             CccEEecCCcEEEEEEE-eeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeE
Q psy15128         44 QDQKVGLNGIASFQCVA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV  122 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~  122 (292)
                      ..+.+.+|+.+.|.|.+ .+.|.+.+.|++++..+....  ...+.....++.|.|.+++.+|+|.|+|.+.|..+....
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~   89 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPA--DGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITK   89 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCC--CSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEE
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccc--cceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEE
Confidence            45689999999999987 678999999999987653222  222333344668999999999999999999998776554


Q ss_pred             E
Q psy15128        123 R  123 (292)
Q Consensus       123 ~  123 (292)
                      .
T Consensus        90 ~   90 (105)
T d1cs6a2          90 S   90 (105)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=8.8e-13  Score=80.42  Aligned_cols=78  Identities=13%  Similarity=0.164  Sum_probs=57.6

Q ss_pred             CCCccEEecCCcEEEEEEEeee-CCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      .+....+.+|+.++|.|.+.+. +...+.|+|++..+..          ......|.|.+++.+|+|.|.|.+.|..+..
T Consensus         6 q~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~----------~~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~   75 (89)
T d1f2qa2           6 QASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKY----------WYENHNISITNATVEDSGTYYCTGKVWQLDY   75 (89)
T ss_dssp             EESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCS----------CCCSSEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             eCCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccc----------ccccceEEEeeeeeecCcEEEEEEEeCCCCe
Confidence            3445568899999999999765 4558999999986631          1124579999999999999999999876543


Q ss_pred             -eEEEEEEEE
Q psy15128        121 -TVRAFLQVT  129 (292)
Q Consensus       121 -~~~~~l~v~  129 (292)
                       +..+.|.|.
T Consensus        76 ~S~~v~i~V~   85 (89)
T d1f2qa2          76 ESEPLNITVI   85 (89)
T ss_dssp             ECCCEEEEEE
T ss_pred             EeeeEEEEEE
Confidence             233455554

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=9.9e-13  Score=81.73  Aligned_cols=82  Identities=15%  Similarity=0.247  Sum_probs=61.1

Q ss_pred             CCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCee-
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT-  121 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~-  121 (292)
                      ..+..+.+|++++|.|.+.+ +.+.+.|++++..+....    ........+.|.|.+++.+|.|.|+|.|.|..+... 
T Consensus        10 ~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~----~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S   84 (96)
T d1l6za2          10 VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTE----RMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRS   84 (96)
T ss_dssp             CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCT----TEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEEC
T ss_pred             cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeeccccc----ceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEE
Confidence            45667899999999999866 557999999998764211    111223345899999999999999999999877654 


Q ss_pred             EEEEEEEE
Q psy15128        122 VRAFLQVT  129 (292)
Q Consensus       122 ~~~~l~v~  129 (292)
                      ..+.|.|.
T Consensus        85 ~~~~L~V~   92 (96)
T d1l6za2          85 NSIKLDII   92 (96)
T ss_dssp             CCCEEEEC
T ss_pred             EeEEEEEE
Confidence            34556654

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=9.8e-13  Score=82.18  Aligned_cols=87  Identities=11%  Similarity=0.148  Sum_probs=66.1

Q ss_pred             CCCccEEecCCcEEEEEEEe-eeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         42 RPQDQKVGLNGIASFQCVAE-GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      .+......+|+.+.|.|.+. +.|.+.|.|+|++..+..... ...+ ....++.|.|.+++.+|+|.|+|.+.|..|..
T Consensus         8 ~~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~-~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~   85 (101)
T d1iray1           8 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTE-QASR-IHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCL   85 (101)
T ss_dssp             CCCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCC-TTSS-EEEETTEEEETTCCGGGCEEEEEEEEETTEEE
T ss_pred             CCcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccc-cceE-EeccCCEEEeccceecCCEEEEEEEECCCCeE
Confidence            34456677899999999885 568889999998865532221 1122 22346689999999999999999999999888


Q ss_pred             eEEEEEEEEe
Q psy15128        121 TVRAFLQVTS  130 (292)
Q Consensus       121 ~~~~~l~v~~  130 (292)
                      ...+.|.|..
T Consensus        86 ~~~~~L~V~~   95 (101)
T d1iray1          86 RIKISAKFVE   95 (101)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEEe
Confidence            8888777753

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.3e-14  Score=91.99  Aligned_cols=98  Identities=22%  Similarity=0.318  Sum_probs=70.9

Q ss_pred             EEEeCCCcEEeCCCccEEecCCcEEEEEEEeee-CCCeeEEEECCeEEeeccCCCcceeEE-e---eecEEEEccCCCCC
Q psy15128         31 LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHV-T---QEGTLRIQGVQKED  105 (292)
Q Consensus        31 l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~-~---~~~~l~i~~~~~~d  105 (292)
                      |.|..||.+.. +....+.+|+.+.|.|.+.+. |.+.+.|++++..+............. .   ....|.|.++...|
T Consensus         2 L~V~~Pp~i~~-~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D   80 (115)
T d2crya1           2 LTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRAD   80 (115)
T ss_dssp             CCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHH
T ss_pred             eEEecCCEEec-CCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhc
Confidence            56677887654 456678899999999999885 556799999988764322221111111 1   12369999999998


Q ss_pred             -CeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128        106 -AGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus       106 -~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                       +|.|+|.|.|..|.....+.|.|.
T Consensus        81 ~~G~Y~C~A~N~~G~~~~~~~L~V~  105 (115)
T d2crya1          81 FQTIYNCTAWNSFGSDTEIIRLKEQ  105 (115)
T ss_dssp             HHSCEEEEEECSSCEEEEEECCCCS
T ss_pred             CCeEEEEEEEECCCeEEEEEEEEEE
Confidence             699999999999988877777665

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=5e-13  Score=80.20  Aligned_cols=72  Identities=21%  Similarity=0.298  Sum_probs=55.1

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCC-eeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      .|.+.+.|....+.+|+.++|.|.+.+.|.+ .+.|++++..+.            .....|.|.+++.+|+|.|.|.+.
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~------------~~~~~l~i~~v~~~d~G~Y~C~a~   68 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE------------ETNSSLNIVNAKFEDSGEYKCQHQ   68 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECS------------CCSSEEEECSCCGGGCEEEEEECT
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeee------------cccceeEECCCChhhCCcEEEEec
Confidence            3667777878889999999999999888766 466788876552            124579999999999999999998


Q ss_pred             eCCcC
Q psy15128        115 SVAGS  119 (292)
Q Consensus       115 ~~~~~  119 (292)
                      +....
T Consensus        69 ~s~~S   73 (82)
T d1f2qa1          69 QVNES   73 (82)
T ss_dssp             TSSCC
T ss_pred             CCCCc
Confidence            75443

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.8e-12  Score=79.16  Aligned_cols=87  Identities=16%  Similarity=0.190  Sum_probs=59.8

Q ss_pred             CCcEEeCCC-ccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         36 PPSFVVRPQ-DQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        36 ~p~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      +|.+..... ...+.+|+.+.|.|.+. .|.+.+.|++++..+.... .............|.|.++..+|+|.|+|.+.
T Consensus         5 ~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   82 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSG-SKYIFESIGAKRTLTISQCSLADDAAYQCVVG   82 (94)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCS-SSSEEEEETTEEEEEECSCSSSSCEEEEEEET
T ss_pred             CCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeee-eeEeeeccCCeEEeecCCCCceecEEEEEEEe
Confidence            344444433 45788999999999985 4888999999998874221 11222222234479999999999999999985


Q ss_pred             eCCcCeeEEEEEEE
Q psy15128        115 SVAGSTTVRAFLQV  128 (292)
Q Consensus       115 ~~~~~~~~~~~l~v  128 (292)
                      |    ....+.|.|
T Consensus        83 n----~~~s~~l~V   92 (94)
T d1pd6a_          83 G----EKCSTELFV   92 (94)
T ss_dssp             T----EEECCEEEE
T ss_pred             e----EEEEEEEEE
Confidence            5    344445544

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.9e-12  Score=80.84  Aligned_cols=73  Identities=19%  Similarity=0.322  Sum_probs=56.9

Q ss_pred             cEEecCCcEEEEE------EEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         46 QKVGLNGIASFQC------VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        46 ~~~~~g~~~~l~C------~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      ..+..|+...|.|      .+.+.|.|.+.|++++..+..     ........++.|.|.++..+|+|.|+|.|.|..+.
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~-----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g   83 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL-----DNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLG   83 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCC-----CSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccC-----CCcEEEecCCEEEEcccccccCcEEEEEEEECcCC
Confidence            4577899999999      456778899999999988742     12223344678999999999999999999987765


Q ss_pred             eeEE
Q psy15128        120 TTVR  123 (292)
Q Consensus       120 ~~~~  123 (292)
                      ...+
T Consensus        84 ~~~~   87 (103)
T d1iray2          84 KQYP   87 (103)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5443

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.37  E-value=5.5e-14  Score=89.59  Aligned_cols=76  Identities=20%  Similarity=0.348  Sum_probs=56.6

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCC-----CceEEecCCCccccccccccccccccccccc---eeE
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES-----SKRVSILGDPWFDSRRSRSIFGSVLGALSDD---QWK  278 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g---~y~  278 (292)
                      ..++.+|+.+.|.|.+..|.|.|.+.|++++..+....     ..++....+        ..|.|..++..|+|   .|.
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~--------~~L~i~~v~~~D~gd~g~Y~   82 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPD--------GNLYFTIVTKEDVSDIYKYV   82 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTT--------SCEEEEEECGGGCCSSEEEE
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccc--------cccEEeeeEeeccCCceEEE
Confidence            34567899999999975799999999999876653111     112222222        35889999999888   699


Q ss_pred             EEEeeccccccc
Q psy15128        279 LIAKNIRNQQQH  290 (292)
Q Consensus       279 C~a~n~~g~~~~  290 (292)
                      |.|+|.+|++..
T Consensus        83 C~A~N~~g~~~~   94 (111)
T d1biha2          83 CTAKNAAVDEEV   94 (111)
T ss_dssp             EEEECTTCSSCE
T ss_pred             EEEEeCCCCceE
Confidence            999999998753

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.5e-14  Score=91.83  Aligned_cols=83  Identities=12%  Similarity=0.113  Sum_probs=59.5

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccc-cceeEEEEeecc
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALS-DDQWKLIAKNIR  285 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~C~a~n~~  285 (292)
                      ...+.+|+.+.|.|.+....|++.+.|++++..+......++.+....... .....|.|..+...| +|.|+|+|+|..
T Consensus        15 ~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~-~~~s~L~I~~v~~~D~~G~Y~C~A~N~~   93 (115)
T d2crya1          15 TQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE-GVISTLTISNIVRADFQTIYNCTAWNSF   93 (115)
T ss_dssp             CCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETT-EEEEEEECTTCCHHHHHSCEEEEEECSS
T ss_pred             CEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeecccc-CcEEEEEEeccchhcCCeEEEEEEEECC
Confidence            345678999999999843356678999999998864433333332221111 122368999999999 699999999999


Q ss_pred             ccccc
Q psy15128        286 NQQQH  290 (292)
Q Consensus       286 g~~~~  290 (292)
                      |++++
T Consensus        94 G~~~~   98 (115)
T d2crya1          94 GSDTE   98 (115)
T ss_dssp             CEEEE
T ss_pred             CeEEE
Confidence            99865

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.6e-12  Score=81.48  Aligned_cols=89  Identities=15%  Similarity=0.193  Sum_probs=67.3

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEee-eCCC--eeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEG-SPLP--SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC  111 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C  111 (292)
                      .|+.+.+.+.+..+.+|+.++|.|.+.| .|.+  .+.|++++..+.......     ....+.|.|..+..+|.|.|+|
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~-----~~~~s~l~i~~~~~dd~g~ytC   77 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVG-----EPAEVTTTVLVRRDHHGAQFSC   77 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT-----TTEEEEEEEECCSSCSSCEEEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccccc-----ccceEEEEEeeehhHCCCEEEE
Confidence            4667777777888999999999999987 4555  578999998875332211     1234579999999999999999


Q ss_pred             EEEeCCcCeeEEEEEEE
Q psy15128        112 SALSVAGSTTVRAFLQV  128 (292)
Q Consensus       112 ~~~~~~~~~~~~~~l~v  128 (292)
                      .|.|..+.......+.+
T Consensus        78 ~A~n~~g~~~~~~~~~~   94 (103)
T d1iama1          78 RTELDLRPQGLELFENT   94 (103)
T ss_dssp             EEEEECGGGTSCEEEEE
T ss_pred             EEEeCCCCccCeEeeeE
Confidence            99998887655555544

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.5e-13  Score=84.61  Aligned_cols=74  Identities=14%  Similarity=0.079  Sum_probs=55.2

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCC--eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128        206 KDTRVASGETALLECGPPKGQPEP--TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN  283 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n  283 (292)
                      ....+.+|+.++|+|.+..+.|.+  .+.|+++++.+.....          ........|.|.....+|.|.|+|.|+|
T Consensus        12 ~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~----------~~~~~~s~l~i~~~~~dd~g~ytC~A~n   81 (103)
T d1iama1          12 LPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA----------VGEPAEVTTTVLVRRDHHGAQFSCRTEL   81 (103)
T ss_dssp             CCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC----------CTTTEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred             CCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc----------ccccceEEEEEeeehhHCCCEEEEEEEe
Confidence            345678999999999995567766  5889999998842110          0111233578888899999999999999


Q ss_pred             cccccc
Q psy15128        284 IRNQQQ  289 (292)
Q Consensus       284 ~~g~~~  289 (292)
                      .+|...
T Consensus        82 ~~g~~~   87 (103)
T d1iama1          82 DLRPQG   87 (103)
T ss_dssp             ECGGGT
T ss_pred             CCCCcc
Confidence            999865

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.35  E-value=9.8e-13  Score=79.55  Aligned_cols=71  Identities=20%  Similarity=0.289  Sum_probs=56.5

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeeeCCC-eeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      |.+.+.|....+.+|+.++|.|.+.+.+.+ .+.|++++..+.            .....|.|.+++.+|+|.|+|.+.|
T Consensus         5 p~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~------------~~~~~l~i~~v~~~dsG~Y~C~a~n   72 (85)
T d2fcba1           5 AVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIP------------THTQPSYRFKANNNDSGEYTCQTGQ   72 (85)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECT------------TCCSSEEEEECCGGGCEEEEEECTT
T ss_pred             CEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccc------------ccccceEEeeccccCCcEEEEECCC
Confidence            446667777889999999999999887655 688999987652            1234689999999999999999987


Q ss_pred             CCcC
Q psy15128        116 VAGS  119 (292)
Q Consensus       116 ~~~~  119 (292)
                      ..+.
T Consensus        73 s~~S   76 (85)
T d2fcba1          73 TSLS   76 (85)
T ss_dssp             SBCC
T ss_pred             Cccc
Confidence            5443

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=5.3e-13  Score=84.10  Aligned_cols=82  Identities=16%  Similarity=0.159  Sum_probs=56.4

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEecc--CCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDL--ESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN  283 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n  283 (292)
                      +...+.+|+++.|.|.+ .+.|.|.+.|++++..+..  ............. .......|.|..+..+|+|.|+|.|+|
T Consensus         9 ~~v~v~~G~~v~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~tL~I~~v~~~D~G~Y~C~a~n   86 (102)
T d1f97a1           9 SDVQVPENESIKLTCTY-SGFSSPRVEWKFVQGSTTALVCYNSQITAPYADR-VTFSSSGITFSSVTRKDNGEYTCMVSE   86 (102)
T ss_dssp             SEEEEETTCCEEEECEE-ESCSSEEEEEEEEETTEEEEEEETTEECGGGTTT-EEEETTEEEESCCCGGGCEEEEEEEEE
T ss_pred             CcEEEeCCCEEEEEEEc-CCCCCCeEEEEeccccceeeeccccccccceeeE-EEecCCEEEEeECCccCCEEEEEEEEE
Confidence            56788999999999998 7899999999985432210  0111111110100 011223689999999999999999999


Q ss_pred             cccccc
Q psy15128        284 IRNQQQ  289 (292)
Q Consensus       284 ~~g~~~  289 (292)
                      ..|...
T Consensus        87 ~~g~~~   92 (102)
T d1f97a1          87 EGGQNY   92 (102)
T ss_dssp             TTSSSE
T ss_pred             CCCCEE
Confidence            999865

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=9.8e-13  Score=83.33  Aligned_cols=85  Identities=15%  Similarity=0.165  Sum_probs=58.5

Q ss_pred             ccEEecCCcEE---EEEEEeeeCCCeeEEEECCeEEeeccCCCcc-----eeEEeeecEEEEccCCCCCCeEEEEEEEeC
Q psy15128         45 DQKVGLNGIAS---FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYG-----HLHVTQEGTLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        45 ~~~~~~g~~~~---l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~-----~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                      .+.+..|....   |.|.+.|.|.|.+.|++++..+.........     .........|.|.++..+|.|.|+|.|.|.
T Consensus         6 ~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~   85 (107)
T d1he7a_           6 SVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP   85 (107)
T ss_dssp             CCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEET
T ss_pred             EeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeC
Confidence            44454555555   4558899999999999999876421110000     000112346999999999999999999999


Q ss_pred             CcCeeEEEEEEEE
Q psy15128        117 AGSTTVRAFLQVT  129 (292)
Q Consensus       117 ~~~~~~~~~l~v~  129 (292)
                      .|.....+.|.+.
T Consensus        86 ~G~~~~~i~v~v~   98 (107)
T d1he7a_          86 FGQASASIMAAFM   98 (107)
T ss_dssp             TEEEEEEEEECCC
T ss_pred             CCEEEEEEEEEEE
Confidence            9988777776664

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=5.4e-13  Score=84.30  Aligned_cols=77  Identities=16%  Similarity=0.169  Sum_probs=52.8

Q ss_pred             ceEEeCCCceEEEeeCCCCCC--CCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        207 DTRVASGETALLECGPPKGQP--EPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      ...+.+|+.++|+|.+..+.|  .+.|+|+++|++|.........  ..   .......|.+.....+|.|.|+|.|+|.
T Consensus        11 p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~--~~---~~~~~s~l~~~~~~~d~g~~ytC~A~n~   85 (106)
T d1zxqa1          11 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAA--PA---PQEATATFNSTADREDGHRNFSCLAVLD   85 (106)
T ss_dssp             SSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSST--TC---TTCEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             CCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEe--ec---ccceeEEEEEeeehhcCCcEEEEEEEec
Confidence            346789999999999965565  4489999999998522211111  11   1112234666677778888999999999


Q ss_pred             cccc
Q psy15128        285 RNQQ  288 (292)
Q Consensus       285 ~g~~  288 (292)
                      +|..
T Consensus        86 ~~~~   89 (106)
T d1zxqa1          86 LMSR   89 (106)
T ss_dssp             CGGG
T ss_pred             CCCC
Confidence            9865

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.7e-12  Score=81.90  Aligned_cols=87  Identities=11%  Similarity=0.060  Sum_probs=59.9

Q ss_pred             eCCCccEEecCCcEEEEEEEee-e--CCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEG-S--PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~-~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      +.+.+..+.+|+.++|.|.+.| .  |.+.+.|++++..+..................|.+.....+|.|.|+|+|.|..
T Consensus         7 i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~   86 (106)
T d1zxqa1           7 LTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDL   86 (106)
T ss_dssp             EEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEEC
T ss_pred             ecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecC
Confidence            4455667889999999999986 3  344799999998875433222222212233468888888888999999999987


Q ss_pred             cCeeEEEEEE
Q psy15128        118 GSTTVRAFLQ  127 (292)
Q Consensus       118 ~~~~~~~~l~  127 (292)
                      +.......+.
T Consensus        87 ~~~~~~~~~~   96 (106)
T d1zxqa1          87 MSRGGNIFHK   96 (106)
T ss_dssp             GGGTCCEEEE
T ss_pred             CCCCCeeEec
Confidence            6554444333

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.32  E-value=1.6e-12  Score=78.55  Aligned_cols=66  Identities=14%  Similarity=0.276  Sum_probs=52.6

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        206 KDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      +...+.+|+.++|.|.+ .+.|.+ .+.|++||+.+...                 ...|.|..+..+|+|.|+|.|.|.
T Consensus        12 ~~~~v~~G~~v~L~C~~-~~~~~~~~~~w~~~g~~~~~~-----------------~~~l~i~~v~~~dsG~Y~C~a~ns   73 (85)
T d2fcba1          12 QWINVLQEDSVTLTCRG-THSPESDSIQWFHNGNLIPTH-----------------TQPSYRFKANNNDSGEYTCQTGQT   73 (85)
T ss_dssp             CCSEEETTCEEEEEEEC-SSCCCTTCCEEEETTEECTTC-----------------CSSEEEEECCGGGCEEEEEECTTS
T ss_pred             CCeEEcCCCeEEEEEEE-eeccceeEEEeeccccccccc-----------------ccceEEeeccccCCcEEEEECCCC
Confidence            45678999999999998 666655 79999999887421                 124778889999999999999998


Q ss_pred             ccccc
Q psy15128        285 RNQQQ  289 (292)
Q Consensus       285 ~g~~~  289 (292)
                      .+++.
T Consensus        74 ~~S~~   78 (85)
T d2fcba1          74 SLSDP   78 (85)
T ss_dssp             BCCCC
T ss_pred             ccccc
Confidence            77653

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.27  E-value=4.7e-12  Score=76.23  Aligned_cols=66  Identities=15%  Similarity=0.213  Sum_probs=51.6

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        206 KDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      ....+.+|+.++|.|.+ .+.|.+ .+.|+++|..+...                 ...|.|..++..|+|.|+|.|.|.
T Consensus        13 ~~~~v~~G~~vtL~C~~-~~~~~~~~~~~~~~~~~~~~~-----------------~~~l~i~~~~~~d~G~Y~C~a~~s   74 (84)
T d1fnla1          13 QWYSVLEKDSVTLKCQG-AYSPEDNSTQWFHNESLISSQ-----------------ASSYFIDAATVNDSGEYRCQTNLS   74 (84)
T ss_dssp             CCSEEETTCCEEEEEEC-CCBTTBCCCEEEETTEEEESS-----------------CSEEEESSCCGGGCEEEEEECSSS
T ss_pred             CCcEEeCCCeEEEEEEe-ccCCCCeEEEEeeeceeeeec-----------------ceeeEecCCcccCCEEEEEEccCC
Confidence            45678999999999998 777766 56778888776411                 125778899999999999999987


Q ss_pred             ccccc
Q psy15128        285 RNQQQ  289 (292)
Q Consensus       285 ~g~~~  289 (292)
                      .+++.
T Consensus        75 ~~S~~   79 (84)
T d1fnla1          75 TLSDP   79 (84)
T ss_dssp             CCCCC
T ss_pred             Ccccc
Confidence            76543

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4.2e-12  Score=76.05  Aligned_cols=67  Identities=18%  Similarity=0.264  Sum_probs=50.1

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN  283 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n  283 (292)
                      |+...+.+|+.++|.|.+ .+.|.+ .+.|+++|..+...                 ...|.|..+..+|+|.|.|.|.|
T Consensus         8 P~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~~~~~~~~~~-----------------~~~l~i~~v~~~d~G~Y~C~a~~   69 (82)
T d1f2qa1           8 PPWNRIFKGENVTLTCNG-NNFFEVSSTKWFHNGSLSEET-----------------NSSLNIVNAKFEDSGEYKCQHQQ   69 (82)
T ss_dssp             SSCSEEETTCCEEEECCT-TCC----CCEEEETTEECSCC-----------------SSEEEECSCCGGGCEEEEEECTT
T ss_pred             CCCeEEeCCCeEEEEEEE-eeeeeecceeeeeeeeeeecc-----------------cceeEECCCChhhCCcEEEEecC
Confidence            345678999999999998 677766 56678888776411                 12477889999999999999999


Q ss_pred             cccccc
Q psy15128        284 IRNQQQ  289 (292)
Q Consensus       284 ~~g~~~  289 (292)
                      ..+++.
T Consensus        70 s~~S~~   75 (82)
T d1f2qa1          70 VNESEP   75 (82)
T ss_dssp             SSCCCC
T ss_pred             CCCccc
Confidence            776553

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.25  E-value=8.1e-13  Score=80.63  Aligned_cols=82  Identities=16%  Similarity=0.105  Sum_probs=59.4

Q ss_pred             eCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      ..+.+..+.+|+++.|.|.+ +.|.+.+.|++++..+.  .+..+..........|.|.+++.+|+|.|+|.+.|..   
T Consensus         6 ~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~---   79 (89)
T d1tiua_           6 KPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLT--ASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAK---   79 (89)
T ss_dssp             BCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCC--SSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCB---
T ss_pred             cCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecc--cceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceE---
Confidence            34567889999999999998 46888999999998763  2222222222234479999999999999999986543   


Q ss_pred             eEEEEEEEE
Q psy15128        121 TVRAFLQVT  129 (292)
Q Consensus       121 ~~~~~l~v~  129 (292)
                       .++.|.|.
T Consensus        80 -~sa~l~V~   87 (89)
T d1tiua_          80 -SAANLKVK   87 (89)
T ss_dssp             -CCEEEEEE
T ss_pred             -EEEEEEEE
Confidence             34555554

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.22  E-value=5.8e-12  Score=80.03  Aligned_cols=80  Identities=21%  Similarity=0.217  Sum_probs=59.6

Q ss_pred             EEecCCcEEEEEEE-eeeCCCeeEEEECCeEEeeccCC--CcceeEEeeecEEEEccCCCCCCe---EEEEEEEeCCcCe
Q psy15128         47 KVGLNGIASFQCVA-EGSPLPSVFWTQEGSQVLMFPGN--AYGHLHVTQEGTLRIQGVQKEDAG---FFVCSALSVAGST  120 (292)
Q Consensus        47 ~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g---~Y~C~~~~~~~~~  120 (292)
                      .+.+|+.+.|.|.+ .|.|.|.+.|+|++..+......  ...+.....++.|.|.+++..|+|   .|+|.|.|..+..
T Consensus        13 t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~   92 (111)
T d1biha2          13 TPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDE   92 (111)
T ss_dssp             CCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSS
T ss_pred             cccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCCc
Confidence            45689999999986 89999999999987654322211  122344455678999999998776   7999999998877


Q ss_pred             eEEEEE
Q psy15128        121 TVRAFL  126 (292)
Q Consensus       121 ~~~~~l  126 (292)
                      .....+
T Consensus        93 ~~~~~~   98 (111)
T d1biha2          93 EVVLVE   98 (111)
T ss_dssp             CEEEEE
T ss_pred             eEEEEE
Confidence            655433

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.6e-11  Score=75.68  Aligned_cols=81  Identities=12%  Similarity=0.128  Sum_probs=56.8

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCC---CccccccccccccccccccccceeEEEEee
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD---PWFDSRRSRSIFGSVLGALSDDQWKLIAKN  283 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n  283 (292)
                      .+....|++|+|.|.+  ..|.+.+.|++++..+.............   .........+|.|..++.+|+|.|+|.|.|
T Consensus         4 ~v~~~~G~sVtl~c~~--~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n   81 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPS--NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (93)
T ss_dssp             EEEEETTCCEEECCCC--SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             EEEEEECCCEEEEecC--CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEEC
Confidence            4577899999999985  46888999999988764222222222111   001112334799999999999999999999


Q ss_pred             cccccc
Q psy15128        284 IRNQQQ  289 (292)
Q Consensus       284 ~~g~~~  289 (292)
                      ..|+.+
T Consensus        82 ~~~t~~   87 (93)
T d1ccza1          82 ITDTMK   87 (93)
T ss_dssp             CCSCEE
T ss_pred             CCcEEE
Confidence            888764

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=3.5e-10  Score=69.89  Aligned_cols=85  Identities=16%  Similarity=0.294  Sum_probs=59.3

Q ss_pred             ccEEecCCcEEEEEEEee-e-CCCeeEEEECCeEEeeccCCC-----cceeEEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         45 DQKVGLNGIASFQCVAEG-S-PLPSVFWTQEGSQVLMFPGNA-----YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~-~-~~~~v~W~~~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      .+....|++++|.|.... . ....|.|++++..+.......     ..+.....+++|.|.+++.+|+|.|+|.+.+..
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~   83 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTN   83 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETT
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCC
Confidence            345678999999996422 2 234799999887664322211     223344456789999999999999999999988


Q ss_pred             cCeeEEEEEEEE
Q psy15128        118 GSTTVRAFLQVT  129 (292)
Q Consensus       118 ~~~~~~~~l~v~  129 (292)
                      |.......+.+.
T Consensus        84 g~~~~~~~~~L~   95 (98)
T d1hnga1          84 GTRILNKALDLR   95 (98)
T ss_dssp             CCEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            877555444443

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.1e-10  Score=71.82  Aligned_cols=74  Identities=16%  Similarity=0.298  Sum_probs=52.6

Q ss_pred             ccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCC-------CcceeEE-eeecEEEEccCCCCCCeEEEEEEEeC
Q psy15128         45 DQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGN-------AYGHLHV-TQEGTLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-------~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                      .+....|++++|.|... .|.+.+.|++++..+......       ...+... ..++.|+|.+++++|+|.|+|.+.+.
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~   82 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence            35678899999999864 577899999988766422211       1111121 22457999999999999999999776


Q ss_pred             CcC
Q psy15128        117 AGS  119 (292)
Q Consensus       117 ~~~  119 (292)
                      .+.
T Consensus        83 ~~t   85 (93)
T d1ccza1          83 TDT   85 (93)
T ss_dssp             CSC
T ss_pred             CcE
Confidence            543

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.06  E-value=1.8e-10  Score=71.22  Aligned_cols=82  Identities=10%  Similarity=0.054  Sum_probs=55.8

Q ss_pred             ceEEeCCCceEEEeeCCCC-CCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        207 DTRVASGETALLECGPPKG-QPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      .+....|++|+|.|..... .....|.|++++..+..-.........+.........+|.|..++.+|+|.|+|.+.|..
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~   83 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTN   83 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETT
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCC
Confidence            4566789999999963222 233479999998776321111112222333333344579999999999999999999999


Q ss_pred             ccc
Q psy15128        286 NQQ  288 (292)
Q Consensus       286 g~~  288 (292)
                      |..
T Consensus        84 g~~   86 (98)
T d1hnga1          84 GTR   86 (98)
T ss_dssp             CCE
T ss_pred             CCE
Confidence            976

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=4.5e-10  Score=70.53  Aligned_cols=73  Identities=14%  Similarity=0.153  Sum_probs=51.3

Q ss_pred             cEEecCCcEEEEEEEeeeCCCeeEEEECCeE-----Eeec---------cCCCcceeEEeeecEEEEccCCCCCCeEEEE
Q psy15128         46 QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQ-----VLMF---------PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC  111 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~-----~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C  111 (292)
                      ..+.+|+++.|.|.........+.|+|....     +...         ...-.+|..+..+++|.|.+++.+|+|.|+|
T Consensus         9 ~~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c   88 (107)
T d1l6za1           9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTL   88 (107)
T ss_dssp             SSCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEE
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEE
Confidence            3467999999999743333558999985421     1111         1112356667778899999999999999999


Q ss_pred             EEEeCCc
Q psy15128        112 SALSVAG  118 (292)
Q Consensus       112 ~~~~~~~  118 (292)
                      .+.+..+
T Consensus        89 ~v~~~~~   95 (107)
T d1l6za1          89 DMTDENY   95 (107)
T ss_dssp             EEEETTE
T ss_pred             EEEECCC
Confidence            9976543

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.90  E-value=1.2e-08  Score=66.37  Aligned_cols=85  Identities=18%  Similarity=0.202  Sum_probs=55.2

Q ss_pred             ccEEecCCcEEEEEEEeee---CCCeeEEEECCeEEe--ec-c--------CCC-cceeEEe------eecEEEEccCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGS---PLPSVFWTQEGSQVL--MF-P--------GNA-YGHLHVT------QEGTLRIQGVQK  103 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~---~~~~v~W~~~~~~~~--~~-~--------~~~-~~~~~~~------~~~~l~i~~~~~  103 (292)
                      .+.+.+|++++|.|.+...   ....+.|++.+....  .. .        ... ..+..+.      .+..|.|.+++.
T Consensus        11 ~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   90 (126)
T d1pkoa_          11 PIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF   90 (126)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEch
Confidence            4778899999999988542   233689998643211  00 0        011 1122211      134899999999


Q ss_pred             CCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128        104 EDAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus       104 ~d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      +|+|.|+|.+.+..+.....+.|.|.
T Consensus        91 ~D~G~Y~C~v~~~~~~~~~~v~L~V~  116 (126)
T d1pkoa_          91 SDEGGYTCFFRDHSYQEEAAVELKVE  116 (126)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             hHCeEEEEEEEECCCEEEEEEEEEEe
Confidence            99999999999876666666666664

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.78  E-value=8.4e-08  Score=61.45  Aligned_cols=79  Identities=15%  Similarity=0.260  Sum_probs=49.2

Q ss_pred             EeCCCccEEecCCcEEEEEEEeee----CCCeeEEEECC--e----EEee---------ccCCCcceeEEee-----ecE
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGS----PLPSVFWTQEG--S----QVLM---------FPGNAYGHLHVTQ-----EGT   95 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~----~~~~v~W~~~~--~----~~~~---------~~~~~~~~~~~~~-----~~~   95 (292)
                      +..+..+.+..|++++|.|.+...    ....+.|++..  .    .+..         ....-.++..+..     +..
T Consensus         3 v~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   82 (119)
T d1neua_           3 VYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGS   82 (119)
T ss_dssp             EECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCC
T ss_pred             EcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEE
Confidence            345667788999999999987532    23378998731  1    1100         0111112333321     247


Q ss_pred             EEEccCCCCCCeEEEEEEEeCCc
Q psy15128         96 LRIQGVQKEDAGFFVCSALSVAG  118 (292)
Q Consensus        96 l~i~~~~~~d~g~Y~C~~~~~~~  118 (292)
                      |.|.+++.+|+|.|.|.+.+..+
T Consensus        83 L~I~~v~~~DsG~Y~C~v~~~~~  105 (119)
T d1neua_          83 IVIHNLDYSDNGTFTCDVKNPPD  105 (119)
T ss_dssp             EEECSCCGGGCEEEEEEEEC---
T ss_pred             EEECCCChHHCEEEEEEEEECCC
Confidence            99999999999999999987543

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=3.1e-08  Score=64.09  Aligned_cols=85  Identities=18%  Similarity=0.318  Sum_probs=54.2

Q ss_pred             ccEEecCCcEEEEEEEeeeCC----CeeEEEECCeE-------Ee--------e-ccCCCcceeEEee------ecEEEE
Q psy15128         45 DQKVGLNGIASFQCVAEGSPL----PSVFWTQEGSQ-------VL--------M-FPGNAYGHLHVTQ------EGTLRI   98 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~----~~v~W~~~~~~-------~~--------~-~~~~~~~~~~~~~------~~~l~i   98 (292)
                      .+.+.+|++++|.|.+...+.    ..+.|++....       +.        . ......++..+..      ...|+|
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I   92 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINV   92 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEE
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEE
Confidence            356789999999999865432    25889873110       00        0 0011122333221      237999


Q ss_pred             ccCCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128         99 QGVQKEDAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus        99 ~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      .+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus        93 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          93 TNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            9999999999999999877666655666553

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=3.9e-09  Score=66.52  Aligned_cols=77  Identities=9%  Similarity=-0.007  Sum_probs=48.2

Q ss_pred             EEeCCCceEEEeeCCCCCCCC--eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccc-eeEEEEeecc
Q psy15128        209 RVASGETALLECGPPKGQPEP--TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDD-QWKLIAKNIR  285 (292)
Q Consensus       209 ~~~~g~~~~l~C~~~~~~p~~--~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~a~n~~  285 (292)
                      .+.+|+.++|+|.+..++|.+  .|.|+++++.+....... .....+.+  .....|.+. +..+|.| .|+|.|+|.+
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~-~~~~~~~~--~~~s~l~~~-~~~~D~g~~ltC~a~~~~   87 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLE-DADRKSLE--TKSLEVTFT-PVIEDIGKVLVCRAKLHI   87 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCS-CCSSCCCE--EEEEEEEEC-CCGGGTTCEEEEEEEECS
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeecccccc-ccccCCcc--eeeEEEEcc-CChHHCCcEEEEEEEcCc
Confidence            367999999999997778865  689999998874211111 11111111  112234444 4455655 8999999998


Q ss_pred             cccc
Q psy15128        286 NQQQ  289 (292)
Q Consensus       286 g~~~  289 (292)
                      +...
T Consensus        88 ~~~~   91 (109)
T d1vcaa1          88 DEMD   91 (109)
T ss_dssp             CCCT
T ss_pred             CCcc
Confidence            7653

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.7e-08  Score=61.36  Aligned_cols=83  Identities=13%  Similarity=0.075  Sum_probs=54.0

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      +|.+...|.. .+..|++|+|.|... .+...+.|++++......... ...........+.|.+++..|+|.|.|...+
T Consensus         7 kPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~-~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~   83 (99)
T d1ucta1           7 MPFISAKSSP-VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGR-RLKFWNETDPEFVIDHMDANKAGRYQCQYRI   83 (99)
T ss_dssp             CCCEEESSCS-EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSE-ECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCEEEecCCC-ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccc-cccCCCCceEEEEecCCCHHHCceEEEEEEC
Confidence            4667777654 588999999999764 355688999876432211100 0001112234789999999999999999887


Q ss_pred             CCcCee
Q psy15128        116 VAGSTT  121 (292)
Q Consensus       116 ~~~~~~  121 (292)
                      ......
T Consensus        84 ~~~~S~   89 (99)
T d1ucta1          84 GHYRFR   89 (99)
T ss_dssp             TTTEEE
T ss_pred             CCcccC
Confidence            654333

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=8.2e-08  Score=58.42  Aligned_cols=78  Identities=14%  Similarity=0.051  Sum_probs=53.5

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      +|.+...|.. .+..|++|+|.|... .....+.|+|++...........   .......+.|.+++..|+|.|.|..++
T Consensus         4 KPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~---~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (95)
T d1olla1           4 KPFIWAEPHF-MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPP---ERINKVKFYIPDMNSRMAGQYSCIYRV   78 (95)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCSSC---TTCCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEeeCCC-cccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEccC---CCccEEEEEEeeeecCCCceEEEEeCC
Confidence            4666666644 478999999999864 34557899998865432211110   011234799999999999999999876


Q ss_pred             CCc
Q psy15128        116 VAG  118 (292)
Q Consensus       116 ~~~  118 (292)
                      ...
T Consensus        79 ~~~   81 (95)
T d1olla1          79 GEL   81 (95)
T ss_dssp             TTE
T ss_pred             CCC
Confidence            544

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1e-08  Score=63.18  Aligned_cols=78  Identities=14%  Similarity=0.152  Sum_probs=48.7

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCe--EeccCCCceEEecCCCcc---------ccccccccccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQ--FIDLESSKRVSILGDPWF---------DSRRSRSIFGSVLGALSDD  275 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~--~~~~~~~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~~~g  275 (292)
                      .+...+|++|+|.|.. .......+.|++...  .+...... .........         ......+|.|..++.+|+|
T Consensus         3 ~V~~~~G~svtL~C~~-s~~~~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG   80 (97)
T d2nxyb1           3 VVLGKKGDTVELTCTA-SQKKSIQFHWKNSNQIKILGNQGSF-LTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSD   80 (97)
T ss_dssp             EEEEETTSCEEECCBC-SSSSCCCEEEEETTCCEEEEEETTE-EEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCE
T ss_pred             EEEEEcCCcEEEEEEE-ecCCCceEEEEEeCCceeeeeccee-eeecCceeccceEEEeccCCCCEEEEEECCCChHHCE
Confidence            3466899999999996 566667899998532  22111100 111111000         0112346999999999999


Q ss_pred             eeEEEEeeccc
Q psy15128        276 QWKLIAKNIRN  286 (292)
Q Consensus       276 ~y~C~a~n~~g  286 (292)
                      .|.|.+.|...
T Consensus        81 ~Y~C~v~~~~~   91 (97)
T d2nxyb1          81 TYICEVEDQKE   91 (97)
T ss_dssp             EEEEEETTEEE
T ss_pred             EEEEEEecCCe
Confidence            99999988654

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.69  E-value=5.7e-08  Score=60.49  Aligned_cols=75  Identities=16%  Similarity=0.301  Sum_probs=49.3

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC---e-EEeecc-----CCCcceeEEe---eecEEEEccCCCCCCe
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG---S-QVLMFP-----GNAYGHLHVT---QEGTLRIQGVQKEDAG  107 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~---~-~~~~~~-----~~~~~~~~~~---~~~~l~i~~~~~~d~g  107 (292)
                      ...|..+.+.+|++++|.|.........+.||+..   . ......     .....+....   ....|+|.++.++|+|
T Consensus         4 tQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA   83 (106)
T d1a0ql1           4 TQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIA   83 (106)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCS
T ss_pred             ECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCE
Confidence            44566677889999999998866555579999831   1 111110     1112222222   2237999999999999


Q ss_pred             EEEEEEE
Q psy15128        108 FFVCSAL  114 (292)
Q Consensus       108 ~Y~C~~~  114 (292)
                      .|.|.+.
T Consensus        84 ~YyCa~~   90 (106)
T d1a0ql1          84 TYYCLQY   90 (106)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEEe
Confidence            9999864

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.68  E-value=1.4e-07  Score=60.37  Aligned_cols=79  Identities=20%  Similarity=0.395  Sum_probs=53.1

Q ss_pred             CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEEC--CeE------EeeccC----------CC-cceeEEe----ee
Q psy15128         37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE--GSQ------VLMFPG----------NA-YGHLHVT----QE   93 (292)
Q Consensus        37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~--~~~------~~~~~~----------~~-~~~~~~~----~~   93 (292)
                      |.+...|....+.+|++++|.|.+.+.....+.|+|.  +..      +.....          .. ..+....    ..
T Consensus         2 ~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~   81 (122)
T d1nezg_           2 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNK   81 (122)
T ss_dssp             CEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTE
T ss_pred             CceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCE
Confidence            5667778888899999999999987766678999982  111      111110          00 1111111    11


Q ss_pred             cEEEEccCCCCCCeEEEEEEEe
Q psy15128         94 GTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        94 ~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      ..|+|.+++.+|+|.|.|.+..
T Consensus        82 ~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          82 YVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEE
T ss_pred             eEEEEcccccCCCEEEEeeEeC
Confidence            3699999999999999998753

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.66  E-value=6.9e-08  Score=62.57  Aligned_cols=83  Identities=12%  Similarity=0.172  Sum_probs=51.4

Q ss_pred             cceEEeCCCceEEEeeCCC--CCCCCeEEEeEcCeE--ec-c------------CCCceEEecCCCcccccccccccccc
Q psy15128        206 KDTRVASGETALLECGPPK--GQPEPTLHWKKNGQF--ID-L------------ESSKRVSILGDPWFDSRRSRSIFGSV  268 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~--~~p~~~~~W~~~g~~--~~-~------------~~~~~~~~~~~~~~~~~~~~~l~i~~  268 (292)
                      ..+.+..|++++|.|.+..  ......+.|++.+..  +. .            .-..+..+.....  .....+|.|..
T Consensus        10 ~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~sL~I~~   87 (126)
T d1pkoa_          10 HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESI--GEGKVALRIQN   87 (126)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTG--GGTEEEEEESS
T ss_pred             CCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccc--cCCeEEEEEEE
Confidence            4578899999999998521  223346899986421  10 0            0011111111111  11234799999


Q ss_pred             ccccccceeEEEEeeccccccc
Q psy15128        269 LGALSDDQWKLIAKNIRNQQQH  290 (292)
Q Consensus       269 ~~~~~~g~y~C~a~n~~g~~~~  290 (292)
                      ++..|+|.|+|.+.+..|..+.
T Consensus        88 v~~~D~G~Y~C~v~~~~~~~~~  109 (126)
T d1pkoa_          88 VRFSDEGGYTCFFRDHSYQEEA  109 (126)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEE
T ss_pred             EchhHCeEEEEEEEECCCEEEE
Confidence            9999999999999998877653

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.65  E-value=6.1e-08  Score=60.32  Aligned_cols=75  Identities=15%  Similarity=0.275  Sum_probs=48.6

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEEC--CeEEe--e-----ccCCCcceeEEe---eecEEEEccCCCCCCe
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE--GSQVL--M-----FPGNAYGHLHVT---QEGTLRIQGVQKEDAG  107 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~--~~~~~--~-----~~~~~~~~~~~~---~~~~l~i~~~~~~d~g  107 (292)
                      ...|..+.+.+|++++|.|.........+.|||.  +....  .     .......++...   ....|+|.+++.+|+|
T Consensus         5 tQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa   84 (106)
T d1i8ka_           5 TQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVG   84 (106)
T ss_dssp             EEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCE
Confidence            3456667788999999999876555557999973  21111  1     011112222222   2237999999999999


Q ss_pred             EEEEEEE
Q psy15128        108 FFVCSAL  114 (292)
Q Consensus       108 ~Y~C~~~  114 (292)
                      .|.|.+.
T Consensus        85 ~YyCa~~   91 (106)
T d1i8ka_          85 DYYCLQS   91 (106)
T ss_dssp             EEEEEEC
T ss_pred             EEeEecC
Confidence            9999764

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=4.2e-08  Score=60.29  Aligned_cols=70  Identities=13%  Similarity=0.222  Sum_probs=46.4

Q ss_pred             cEEecCCcEEEEEEEeeeCCCeeEEEECCeEEee---------ccCCCcceeEEe------eecEEEEccCCCCCCeEEE
Q psy15128         46 QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLM---------FPGNAYGHLHVT------QEGTLRIQGVQKEDAGFFV  110 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~---------~~~~~~~~~~~~------~~~~l~i~~~~~~d~g~Y~  110 (292)
                      +...+|++++|.|.........+.|++.......         .......+....      .+..|+|.+++.+|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            3456899999999887666668999986432211         111111222111      1236999999999999999


Q ss_pred             EEEEe
Q psy15128        111 CSALS  115 (292)
Q Consensus       111 C~~~~  115 (292)
                      |.+.+
T Consensus        84 C~v~~   88 (97)
T d2nxyb1          84 CEVED   88 (97)
T ss_dssp             EEETT
T ss_pred             EEEec
Confidence            99854

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.5e-07  Score=59.91  Aligned_cols=88  Identities=16%  Similarity=0.256  Sum_probs=52.7

Q ss_pred             CCCccEEecCCcEEEEEEEeee---CCCeeEEEECCeEE----e-ecc----CCCcceeEEeee-----cEEEEccCCCC
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGS---PLPSVFWTQEGSQV----L-MFP----GNAYGHLHVTQE-----GTLRIQGVQKE  104 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~---~~~~v~W~~~~~~~----~-~~~----~~~~~~~~~~~~-----~~l~i~~~~~~  104 (292)
                      .|..+.+.+|++++|.|.....   ....+.|+|.....    . ...    .....+......     ..|+|.+++.+
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            5667788899999999987532   23357898843111    1 111    111122222222     27999999999


Q ss_pred             CCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128        105 DAGFFVCSALSVAGSTTVRAFLQVT  129 (292)
Q Consensus       105 d~g~Y~C~~~~~~~~~~~~~~l~v~  129 (292)
                      |+|.|.|.+..........+.|.|.
T Consensus        85 DsG~Y~C~v~~~~~~~~~~v~L~V~  109 (116)
T d1xeda_          85 DSGRYKCGLGINSRGLSFDVSLEVL  109 (116)
T ss_dssp             GCEEEEEEESCGGGCCEEEEEEEEE
T ss_pred             CCEEEEEEEEcCCCCceEeEEEEEE
Confidence            9999999986543333444455554

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.61  E-value=9e-08  Score=59.49  Aligned_cols=75  Identities=17%  Similarity=0.314  Sum_probs=48.9

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEEC--CeEE--eecc-----CCCcceeEEe---eecEEEEccCCCCCCe
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE--GSQV--LMFP-----GNAYGHLHVT---QEGTLRIQGVQKEDAG  107 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~--~~~~--~~~~-----~~~~~~~~~~---~~~~l~i~~~~~~d~g  107 (292)
                      ...|..+.+.+|++++|.|.........+.|||.  +...  ....     .....+....   .+..|.|.+++++|+|
T Consensus         5 tQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   84 (107)
T d1c5cl1           5 TQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFA   84 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             EccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCe
Confidence            3445667788999999999887665667999983  2211  1111     1111122211   2347999999999999


Q ss_pred             EEEEEEE
Q psy15128        108 FFVCSAL  114 (292)
Q Consensus       108 ~Y~C~~~  114 (292)
                      .|.|.+.
T Consensus        85 ~YyCa~~   91 (107)
T d1c5cl1          85 DYYCLQY   91 (107)
T ss_dssp             EEEEEEC
T ss_pred             EEEEecC
Confidence            9999764

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.61  E-value=6.1e-08  Score=61.31  Aligned_cols=79  Identities=18%  Similarity=0.318  Sum_probs=50.7

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--eE--E-eec-cCCC---cceeEEe-----eecEEEEccCCCC
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--SQ--V-LMF-PGNA---YGHLHVT-----QEGTLRIQGVQKE  104 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~~--~-~~~-~~~~---~~~~~~~-----~~~~l~i~~~~~~  104 (292)
                      +...|..+.+.+|+.++|.|...+.....+.|||..  ..  . ... ....   ..+....     ....|.|.+++.+
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   82 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG   82 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCC
Confidence            344566778899999999999876555578899832  11  1 111 1000   0111111     1237999999999


Q ss_pred             CCeEEEEEEEeCC
Q psy15128        105 DAGFFVCSALSVA  117 (292)
Q Consensus       105 d~g~Y~C~~~~~~  117 (292)
                      |+|.|.|.+....
T Consensus        83 Dsg~YyCa~~~~~   95 (113)
T d2bnqd1          83 DSATYLCAVRPTS   95 (113)
T ss_dssp             GCEEEEEEEEESS
T ss_pred             CCcEEeEeEecCC
Confidence            9999999987543

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.60  E-value=5.7e-08  Score=61.55  Aligned_cols=78  Identities=18%  Similarity=0.317  Sum_probs=51.4

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC-----eEEeeccC-CC---cceeEEe-----eecEEEEccCCCC
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG-----SQVLMFPG-NA---YGHLHVT-----QEGTLRIQGVQKE  104 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~-----~~~~~~~~-~~---~~~~~~~-----~~~~l~i~~~~~~  104 (292)
                      +...|..+.+.+|++++|.|.....+...+.||+..     ..+..... ..   ..+....     ....|.|.+++.+
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~   82 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLS   82 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGG
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChh
Confidence            344566778899999999999877666689999832     11111110 00   1111111     1236999999999


Q ss_pred             CCeEEEEEEEeC
Q psy15128        105 DAGFFVCSALSV  116 (292)
Q Consensus       105 d~g~Y~C~~~~~  116 (292)
                      |+|.|.|.+...
T Consensus        83 Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          83 DSASYICVVSDR   94 (114)
T ss_dssp             GCSEEEEEEECS
T ss_pred             hCcccceeeecC
Confidence            999999998764

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.60  E-value=1.6e-07  Score=58.62  Aligned_cols=76  Identities=17%  Similarity=0.253  Sum_probs=49.8

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--e---EEeec----cCCCcceeEEe---eecEEEEccCCCCCC
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--S---QVLMF----PGNAYGHLHVT---QEGTLRIQGVQKEDA  106 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~---~~~~~----~~~~~~~~~~~---~~~~l~i~~~~~~d~  106 (292)
                      +...|..+.+.+|++++|.|.........+.||+..  .   .+...    ......+....   ....|.|.+++.+|+
T Consensus         4 ~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DS   83 (107)
T d1kcvl1           4 MTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDD   83 (107)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCC
Confidence            345566778899999999999876555579999831  1   11100    01111222222   233799999999999


Q ss_pred             eEEEEEEE
Q psy15128        107 GFFVCSAL  114 (292)
Q Consensus       107 g~Y~C~~~  114 (292)
                      |.|.|.+.
T Consensus        84 a~YyCa~~   91 (107)
T d1kcvl1          84 ADYYCGQS   91 (107)
T ss_dssp             EEEEEEEC
T ss_pred             ceEEEEec
Confidence            99999764

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=5.9e-08  Score=60.59  Aligned_cols=79  Identities=11%  Similarity=0.061  Sum_probs=49.2

Q ss_pred             EEeCCCceEEEeeCCCCCCCCeEEEeEcCeEec------cCCCceEEecC---CCccccccccccccccccccccceeEE
Q psy15128        209 RVASGETALLECGPPKGQPEPTLHWKKNGQFID------LESSKRVSILG---DPWFDSRRSRSIFGSVLGALSDDQWKL  279 (292)
Q Consensus       209 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~------~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~~~g~y~C  279 (292)
                      .+.+|++|.|.|+. .......+.|+|+.....      ...........   .+........+|.|..++.+|+|.|.|
T Consensus        10 ~v~~G~~V~L~c~~-~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c   88 (107)
T d1l6za1          10 QVAEDNNVLLLVHN-LPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTL   88 (107)
T ss_dssp             SCCTTCCEEEEEES-CCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEE
T ss_pred             cccCCCCEEEEecC-CCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEE
Confidence            35699999999985 333456899998543211      00111111111   112222233479999999999999999


Q ss_pred             EEeeccccc
Q psy15128        280 IAKNIRNQQ  288 (292)
Q Consensus       280 ~a~n~~g~~  288 (292)
                      .+.+..+..
T Consensus        89 ~v~~~~~~~   97 (107)
T d1l6za1          89 DMTDENYRR   97 (107)
T ss_dssp             EEEETTEEE
T ss_pred             EEEECCCCE
Confidence            998886544

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.57  E-value=1.7e-07  Score=58.48  Aligned_cols=75  Identities=23%  Similarity=0.338  Sum_probs=48.8

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--eE--Eeec-----cCCCcceeEEe---eecEEEEccCCCCCCe
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--SQ--VLMF-----PGNAYGHLHVT---QEGTLRIQGVQKEDAG  107 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~~--~~~~-----~~~~~~~~~~~---~~~~l~i~~~~~~d~g  107 (292)
                      ...|..+.+.+|++++|.|.........+.|||..  ..  +...     ......++...   ....|.|.+++++|+|
T Consensus         5 tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa   84 (107)
T d1j1pl_           5 TQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFG   84 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             ECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCE
Confidence            34566677889999999998865555579999842  11  1110     01111222222   2237999999999999


Q ss_pred             EEEEEEE
Q psy15128        108 FFVCSAL  114 (292)
Q Consensus       108 ~Y~C~~~  114 (292)
                      .|.|...
T Consensus        85 ~YyCa~~   91 (107)
T d1j1pl_          85 MYFCQQA   91 (107)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEcC
Confidence            9999764

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.57  E-value=1e-07  Score=59.34  Aligned_cols=74  Identities=19%  Similarity=0.335  Sum_probs=48.9

Q ss_pred             eCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--e--EEee-----ccCCCcceeEEee---ecEEEEccCCCCCCeE
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--S--QVLM-----FPGNAYGHLHVTQ---EGTLRIQGVQKEDAGF  108 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~--~~~~-----~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~  108 (292)
                      ..|..+.+.+|++++|.|...+.....+.|||..  .  ....     .......++....   ...|.|.+++++|+|.
T Consensus         6 QsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~   85 (107)
T d1ospl1           6 QSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVAT   85 (107)
T ss_dssp             CCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSE
T ss_pred             eeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCc
Confidence            4466677889999999998876555579999832  1  1110     0111122222222   2479999999999999


Q ss_pred             EEEEEE
Q psy15128        109 FVCSAL  114 (292)
Q Consensus       109 Y~C~~~  114 (292)
                      |.|.+.
T Consensus        86 YyCa~~   91 (107)
T d1ospl1          86 YFCQQY   91 (107)
T ss_dssp             EEEEEC
T ss_pred             EEEeec
Confidence            999764

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2.9e-07  Score=58.11  Aligned_cols=77  Identities=23%  Similarity=0.437  Sum_probs=50.4

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeeeC-CCeeEEEECC----e-EE-eec---------cCCCcceeEEee---ecEEEEc
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGSP-LPSVFWTQEG----S-QV-LMF---------PGNAYGHLHVTQ---EGTLRIQ   99 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~v~W~~~~----~-~~-~~~---------~~~~~~~~~~~~---~~~l~i~   99 (292)
                      +...|....+.+|++++|.|.+.+.. ...+.|+|..    . .+ ...         ......+.....   ...|.|.
T Consensus         3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~   82 (114)
T d1akjd_           3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLS   82 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEES
T ss_pred             eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEc
Confidence            45667778889999999999986543 4468999832    1 11 110         111112222222   2379999


Q ss_pred             cCCCCCCeEEEEEEEe
Q psy15128        100 GVQKEDAGFFVCSALS  115 (292)
Q Consensus       100 ~~~~~d~g~Y~C~~~~  115 (292)
                      +++++|+|.|.|.+..
T Consensus        83 ~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          83 DFRRENEGYYFCSALS   98 (114)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             cCCCCCCEEEeEeEcC
Confidence            9999999999999764

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.55  E-value=2.2e-07  Score=58.82  Aligned_cols=77  Identities=14%  Similarity=0.229  Sum_probs=50.1

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--e--EEeecc--C---CCcceeEEe-----eecEEEEccCCCCC
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--S--QVLMFP--G---NAYGHLHVT-----QEGTLRIQGVQKED  105 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~--~~~~~~--~---~~~~~~~~~-----~~~~l~i~~~~~~d  105 (292)
                      ...+..+.+.+|++++|.|.........+.|||..  .  ......  .   ....+....     ....|.|.+++++|
T Consensus         5 ~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (115)
T d1lp9e1           5 TQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSD   84 (115)
T ss_dssp             EECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGG
T ss_pred             EcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeecccccccc
Confidence            34455677889999999999876666689999842  1  111110  0   001112221     12269999999999


Q ss_pred             CeEEEEEEEeC
Q psy15128        106 AGFFVCSALSV  116 (292)
Q Consensus       106 ~g~Y~C~~~~~  116 (292)
                      +|.|.|.+...
T Consensus        85 sg~YyCa~~~~   95 (115)
T d1lp9e1          85 SALYYCALFLA   95 (115)
T ss_dssp             CEEEEEEEEEC
T ss_pred             CccceEEEEcC
Confidence            99999987643

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.54  E-value=5.9e-07  Score=56.86  Aligned_cols=79  Identities=20%  Similarity=0.286  Sum_probs=50.4

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeee-CCCeeEEEEC--Ce--EEee-ccC-------CCcceeEEeee-----cEEEEcc
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGS-PLPSVFWTQE--GS--QVLM-FPG-------NAYGHLHVTQE-----GTLRIQG  100 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~v~W~~~--~~--~~~~-~~~-------~~~~~~~~~~~-----~~l~i~~  100 (292)
                      +...|....+.+|++++|.|..... ....+.|||.  +.  .... ...       ....++....+     ..|+|.+
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP   82 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence            3445667788999999999988653 4557899972  21  1111 100       11123322211     2699999


Q ss_pred             CCCCCCeEEEEEEEeCC
Q psy15128        101 VQKEDAGFFVCSALSVA  117 (292)
Q Consensus       101 ~~~~d~g~Y~C~~~~~~  117 (292)
                      ++.+|+|.|.|.+....
T Consensus        83 ~~~~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          83 VRTEDSATYYCAFTLPP   99 (116)
T ss_dssp             CCGGGCEEEEEEEECTT
T ss_pred             ccccccccceeeEecCC
Confidence            99999999999876543

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.53  E-value=2.6e-07  Score=57.50  Aligned_cols=76  Identities=18%  Similarity=0.266  Sum_probs=48.5

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--e---EEeecc----CCCcceeEEee---ecEEEEccCCCCCCe
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--S---QVLMFP----GNAYGHLHVTQ---EGTLRIQGVQKEDAG  107 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~---~~~~~~----~~~~~~~~~~~---~~~l~i~~~~~~d~g  107 (292)
                      ...|....+.+|++++|.|.........+.||+..  .   .+....    ...........   ...|+|.+++++|+|
T Consensus         5 tQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa   84 (108)
T d1jhll_           5 TQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFA   84 (108)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCS
T ss_pred             EccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccce
Confidence            34456677889999999999876555579999832  1   111100    11111122222   237999999999999


Q ss_pred             EEEEEEEe
Q psy15128        108 FFVCSALS  115 (292)
Q Consensus       108 ~Y~C~~~~  115 (292)
                      .|.|...+
T Consensus        85 ~YyCA~~~   92 (108)
T d1jhll_          85 MYICQQHN   92 (108)
T ss_dssp             EEEEEECS
T ss_pred             EEEEeeCC
Confidence            99997543

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.52  E-value=4.4e-07  Score=57.11  Aligned_cols=75  Identities=23%  Similarity=0.333  Sum_probs=48.9

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeee--CCCeeEEEEC--CeEE-eeccCCCcceeEEee-----ecEEEEccCCCCCCeE
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGS--PLPSVFWTQE--GSQV-LMFPGNAYGHLHVTQ-----EGTLRIQGVQKEDAGF  108 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~--~~~~-~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~  108 (292)
                      +...|..+.+.+|++++|.|...+.  ....+.|||.  +... .+..  ...+.....     ...|+|.+++.+|+|.
T Consensus         3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~--~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~   80 (113)
T d1vesa_           3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSIS--IGGRYVETVNKGSKSFSLRISDLRVEDSGT   80 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECC--CBTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeee--ecccccceeECCCCceeeeecccccCCcce
Confidence            3455667788899999999998753  3446899973  2111 1111  111221111     1279999999999999


Q ss_pred             EEEEEEe
Q psy15128        109 FVCSALS  115 (292)
Q Consensus       109 Y~C~~~~  115 (292)
                      |.|.+..
T Consensus        81 YyCa~~~   87 (113)
T d1vesa_          81 YKCQAFY   87 (113)
T ss_dssp             EEEEEEE
T ss_pred             Eeeeeec
Confidence            9999854

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.52  E-value=2.5e-07  Score=57.56  Aligned_cols=76  Identities=20%  Similarity=0.369  Sum_probs=50.0

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--e--EEeec-----cCCCcceeEEe---eecEEEEccCCCCCC
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--S--QVLMF-----PGNAYGHLHVT---QEGTLRIQGVQKEDA  106 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~--~~~~~-----~~~~~~~~~~~---~~~~l~i~~~~~~d~  106 (292)
                      +...|....+.+|++++|.|.........+.|||..  .  .....     ......+....   ....|+|.+++++|+
T Consensus         4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   83 (107)
T d1tjgl1           4 LTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDF   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcC
Confidence            445566778889999999999876555689999832  1  11111     01111222222   123799999999999


Q ss_pred             eEEEEEEE
Q psy15128        107 GFFVCSAL  114 (292)
Q Consensus       107 g~Y~C~~~  114 (292)
                      |.|.|...
T Consensus        84 A~YyCa~~   91 (107)
T d1tjgl1          84 ATYYCQQL   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             ceEEEEEC
Confidence            99999654

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.52  E-value=1.8e-07  Score=58.28  Aligned_cols=75  Identities=16%  Similarity=0.281  Sum_probs=48.4

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--eE-E-eecc-----C---CCcceeEEeeecEEEEccCCCCCCe
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--SQ-V-LMFP-----G---NAYGHLHVTQEGTLRIQGVQKEDAG  107 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~~-~-~~~~-----~---~~~~~~~~~~~~~l~i~~~~~~d~g  107 (292)
                      ...|..+.+.+|++++|.|.........+.||+..  .. . ....     .   .............|.|.+++++|+|
T Consensus         5 tQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa   84 (107)
T d3cx5k1           5 TQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIA   84 (107)
T ss_dssp             EEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCS
T ss_pred             ECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCC
Confidence            34566677889999999998766555579999842  11 1 1100     0   1111111122348999999999999


Q ss_pred             EEEEEEE
Q psy15128        108 FFVCSAL  114 (292)
Q Consensus       108 ~Y~C~~~  114 (292)
                      .|.|...
T Consensus        85 ~YyCa~~   91 (107)
T d3cx5k1          85 TYFCQHH   91 (107)
T ss_dssp             EEEEEEC
T ss_pred             cEEeeeC
Confidence            9999753

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.51  E-value=7.2e-07  Score=56.64  Aligned_cols=78  Identities=22%  Similarity=0.430  Sum_probs=50.8

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEEC--CeEEe--e----------ccCCCcceeEEee----ecEEEEcc
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE--GSQVL--M----------FPGNAYGHLHVTQ----EGTLRIQG  100 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~--~~~~~--~----------~~~~~~~~~~~~~----~~~l~i~~  100 (292)
                      +...|....+.+|++++|.|...+.....+.|||.  ++...  .          ..+....+.....    ...|.|.+
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~   83 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTS   83 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECS
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccc
Confidence            33455567788999999999987665668999983  22111  0          1111122222221    23699999


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy15128        101 VQKEDAGFFVCSALSV  116 (292)
Q Consensus       101 ~~~~d~g~Y~C~~~~~  116 (292)
                      ++++|+|.|.|.+...
T Consensus        84 ~~~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          84 AHPEDSGFYVCSALAG   99 (118)
T ss_dssp             CCGGGCEEEEEEEECS
T ss_pred             cccccCceEEEEEecC
Confidence            9999999999987643

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.51  E-value=3e-07  Score=57.35  Aligned_cols=75  Identities=15%  Similarity=0.253  Sum_probs=48.9

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--e---EEeec----cCCCcceeEEe---eecEEEEccCCCCCCe
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--S---QVLMF----PGNAYGHLHVT---QEGTLRIQGVQKEDAG  107 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~---~~~~~----~~~~~~~~~~~---~~~~l~i~~~~~~d~g  107 (292)
                      ...|..+.+.+|++++|.|.........+.||+..  +   .+...    ......++...   ....|.|.+++++|+|
T Consensus         5 tQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa   84 (109)
T d1mqkl_           5 TQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFG   84 (109)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             ECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCe
Confidence            34566777889999999998865555579999832  1   11100    11111222222   1237999999999999


Q ss_pred             EEEEEEE
Q psy15128        108 FFVCSAL  114 (292)
Q Consensus       108 ~Y~C~~~  114 (292)
                      .|.|.+.
T Consensus        85 ~YyCA~~   91 (109)
T d1mqkl_          85 SYYCQHH   91 (109)
T ss_dssp             EEEEEEC
T ss_pred             eEEEeee
Confidence            9999865

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.50  E-value=2.7e-07  Score=57.41  Aligned_cols=75  Identities=20%  Similarity=0.247  Sum_probs=48.2

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--e---EEee----ccCCCcceeEEe---eecEEEEccCCCCCCe
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--S---QVLM----FPGNAYGHLHVT---QEGTLRIQGVQKEDAG  107 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~---~~~~----~~~~~~~~~~~~---~~~~l~i~~~~~~d~g  107 (292)
                      +..|....+.+|++++|.|.........+.|||..  .   .+..    .......++...   ....|.|.+++++|+|
T Consensus         5 tQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA   84 (107)
T d1mexl1           5 TQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLA   84 (107)
T ss_dssp             ECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             EcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecce
Confidence            34455677889999999998765555579999832  1   1111    011111222222   2247999999999999


Q ss_pred             EEEEEEE
Q psy15128        108 FFVCSAL  114 (292)
Q Consensus       108 ~Y~C~~~  114 (292)
                      .|.|.+.
T Consensus        85 ~YyCa~~   91 (107)
T d1mexl1          85 EYFCQQY   91 (107)
T ss_dssp             EEEEEEC
T ss_pred             eEEEeEC
Confidence            9999754

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.50  E-value=3.2e-07  Score=57.07  Aligned_cols=72  Identities=18%  Similarity=0.315  Sum_probs=47.1

Q ss_pred             CCccEEecCCcEEEEEEEeeeCCCeeEEEECC-----eEEeec----cCCCcceeEEee---ecEEEEccCCCCCCeEEE
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG-----SQVLMF----PGNAYGHLHVTQ---EGTLRIQGVQKEDAGFFV  110 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~-----~~~~~~----~~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y~  110 (292)
                      |....+.+|++++|.|...+.....+.|||..     ..+...    ......++....   ...|.|.+++++|+|.|.
T Consensus         7 p~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy   86 (106)
T d1lk3l1           7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (106)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcc
Confidence            34567889999999999876555679999842     111110    111122222222   237999999999999999


Q ss_pred             EEEE
Q psy15128        111 CSAL  114 (292)
Q Consensus       111 C~~~  114 (292)
                      |...
T Consensus        87 Ca~~   90 (106)
T d1lk3l1          87 CQQS   90 (106)
T ss_dssp             EEEC
T ss_pred             cccc
Confidence            9654

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.50  E-value=2.8e-07  Score=57.25  Aligned_cols=75  Identities=19%  Similarity=0.262  Sum_probs=49.3

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC-----eEEeec----cCCCcceeEEe---eecEEEEccCCCCCCe
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG-----SQVLMF----PGNAYGHLHVT---QEGTLRIQGVQKEDAG  107 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~-----~~~~~~----~~~~~~~~~~~---~~~~l~i~~~~~~d~g  107 (292)
                      ...|..+.+.+|++++|.|...+.....+.||+..     ..+...    ......++...   ....|.|.+++++|+|
T Consensus         4 tQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa   83 (106)
T d1op3k1           4 TQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFA   83 (106)
T ss_dssp             EEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCS
T ss_pred             eCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCC
Confidence            34566778889999999998876555578999842     111110    11111222222   2236999999999999


Q ss_pred             EEEEEEE
Q psy15128        108 FFVCSAL  114 (292)
Q Consensus       108 ~Y~C~~~  114 (292)
                      .|.|.+.
T Consensus        84 ~YyCa~~   90 (106)
T d1op3k1          84 TYHCQHY   90 (106)
T ss_dssp             EEEEEEE
T ss_pred             cEeeeeC
Confidence            9999765

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=5.5e-08  Score=59.18  Aligned_cols=73  Identities=14%  Similarity=0.225  Sum_probs=47.4

Q ss_pred             CCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccc
Q psy15128        212 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  289 (292)
                      .++.++|.|.+..++|.+.+.|++||+.+............++.|....  .|.+   ...+...|+|.+++..-+..
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S--~L~v---~~~~~~~~tC~V~h~~l~~~   87 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSS--KLDF---NMTTNHSFMCLIKYGHLRVN   87 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEE--EEEE---ETTSCEEEEEEEEETTCCEE
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEE--EEEc---cCCccceEEEEEEecCCCCc
Confidence            4677899999966689999999999998853322222222344444332  2333   23456699999998765443

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=2.5e-07  Score=56.87  Aligned_cols=71  Identities=6%  Similarity=-0.032  Sum_probs=46.2

Q ss_pred             eEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        208 TRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      ..|..|+.|+|.|.+  ..+...+.|+++|........... ....     .....+.|..+...|+|.|+|...+..+
T Consensus        16 ~~V~~G~~VTL~C~~--~~~~~~f~l~k~g~~~~~~~~~~~-~~~~-----~~~a~F~l~~vt~~~~G~Y~C~y~~~~~   86 (99)
T d1ucta1          16 PVIPLDGSVKIQCQA--IREAYLTQLMIIKNSTYREIGRRL-KFWN-----ETDPEFVIDHMDANKAGRYQCQYRIGHY   86 (99)
T ss_dssp             SEEETTCCEEEEECC--CTTCSEEEEEEEETTEEEECSEEC-C---------CCCEEEECSCCGGGCEEEEEEEEETTT
T ss_pred             CceeCCCeEEEEEcC--CCCCcEEEEEECCCcCceeccccc-cCCC-----CceEEEEecCCCHHHCceEEEEEECCCc
Confidence            457899999999985  356679999997642210010000 0000     1122477889999999999999988655

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=3.5e-06  Score=52.58  Aligned_cols=73  Identities=10%  Similarity=0.019  Sum_probs=48.9

Q ss_pred             EEecCCcEEEEEEEee-eCCC--eeEEEECCeEEeeccCCC--cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         47 KVGLNGIASFQCVAEG-SPLP--SVFWTQEGSQVLMFPGNA--YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        47 ~~~~g~~~~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      .+.+|+.++|.|.+.+ .|.+  .+.|++++..+.......  .........+.|.+.....++...|+|+|.+..+.
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE   89 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCC
Confidence            3779999999999876 5644  588999988764322211  11112233456778766666677899999977544

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.47  E-value=1.7e-07  Score=59.37  Aligned_cols=75  Identities=17%  Similarity=0.285  Sum_probs=47.6

Q ss_pred             eCCCccEEecCCcEEEEEEEeeeCCCeeEEEEC--Ce---EEeec-cCCC------cceeEEe---eecEEEEccCCCCC
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE--GS---QVLMF-PGNA------YGHLHVT---QEGTLRIQGVQKED  105 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~--~~---~~~~~-~~~~------~~~~~~~---~~~~l~i~~~~~~d  105 (292)
                      ..+..+.+.+|++++|.|.........+.|||.  +.   .+... ....      ..+....   ....|+|.+++.+|
T Consensus         5 Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (115)
T d1i9ea_           5 QPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSD   84 (115)
T ss_dssp             CCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGG
T ss_pred             cCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccc
Confidence            344567889999999999987655667889972  21   11111 1100      0011111   12369999999999


Q ss_pred             CeEEEEEEEe
Q psy15128        106 AGFFVCSALS  115 (292)
Q Consensus       106 ~g~Y~C~~~~  115 (292)
                      +|.|.|.+..
T Consensus        85 sg~YyCa~~~   94 (115)
T d1i9ea_          85 SAVYFCAVSG   94 (115)
T ss_dssp             CEEEEEEEEE
T ss_pred             cceecccccC
Confidence            9999998753

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.47  E-value=1.7e-07  Score=58.92  Aligned_cols=75  Identities=21%  Similarity=0.306  Sum_probs=47.2

Q ss_pred             eCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--e--E-EeeccCCC----cceeEEe-----eecEEEEccCCCCCC
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--S--Q-VLMFPGNA----YGHLHVT-----QEGTLRIQGVQKEDA  106 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~--~-~~~~~~~~----~~~~~~~-----~~~~l~i~~~~~~d~  106 (292)
                      ..|....+.+|++++|.|.........+.||+..  .  . +.......    ..+....     ....|.|.++..+|+
T Consensus         4 Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (110)
T d1u3ha1           4 QSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDS   83 (110)
T ss_dssp             CSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSC
T ss_pred             ecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCc
Confidence            3456677889999999998865444468999841  1  1 11100000    0111111     122699999999999


Q ss_pred             eEEEEEEEe
Q psy15128        107 GFFVCSALS  115 (292)
Q Consensus       107 g~Y~C~~~~  115 (292)
                      |.|.|.+..
T Consensus        84 a~YyCa~~~   92 (110)
T d1u3ha1          84 ATYFCAASA   92 (110)
T ss_dssp             SEEEECCEE
T ss_pred             eeEeeeecC
Confidence            999998753

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=1.3e-06  Score=54.99  Aligned_cols=78  Identities=18%  Similarity=0.338  Sum_probs=50.5

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeee-CCCeeEEEEC--Ce-E--Eeecc-----CCCcceeEEee-----ecEEEEccCC
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGS-PLPSVFWTQE--GS-Q--VLMFP-----GNAYGHLHVTQ-----EGTLRIQGVQ  102 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~v~W~~~--~~-~--~~~~~-----~~~~~~~~~~~-----~~~l~i~~~~  102 (292)
                      ++..|..+.+.+|++++|.|.+.+. ....+.|||.  +. .  +....     .....++....     ...|.|.+++
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence            3456777889999999999998653 3446889983  21 1  11110     11122222221     1369999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy15128        103 KEDAGFFVCSALSV  116 (292)
Q Consensus       103 ~~d~g~Y~C~~~~~  116 (292)
                      ++|+|.|.|.+...
T Consensus        82 ~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          82 RNDSGIYLCGAISL   95 (114)
T ss_dssp             GGGCEEEEEEEECS
T ss_pred             cCCCeEEEEEEEeC
Confidence            99999999987643

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=7.3e-07  Score=54.09  Aligned_cols=70  Identities=7%  Similarity=0.030  Sum_probs=47.5

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      ...+..|+.|+|.|..  ..+...|.|+++|........        ..........+.|..+...|+|.|+|...+..+
T Consensus        12 ~~~V~~G~~VTL~C~~--~~~~~~f~L~k~g~~~~~~~~--------~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~   81 (95)
T d1olla1          12 HFMVPKEKQVTICCQG--NYGAVEYQLHFEGSLFAVDRP--------KPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL   81 (95)
T ss_dssp             CSEEETTCCEEEEEEC--CTTCCEEEEEETTEEEEEECC--------SSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCcccCCCcEEEEEec--CCCccEEEEEECCCCcceeEE--------ccCCCccEEEEEEeeeecCCCceEEEEeCCCCC
Confidence            3357799999999985  445678999998865421100        000001112578899999999999999887654

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.45  E-value=5.4e-07  Score=56.04  Aligned_cols=75  Identities=17%  Similarity=0.295  Sum_probs=48.9

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC-----eEEeec----cCCCcceeEEe---eecEEEEccCCCCCCe
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG-----SQVLMF----PGNAYGHLHVT---QEGTLRIQGVQKEDAG  107 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~-----~~~~~~----~~~~~~~~~~~---~~~~l~i~~~~~~d~g  107 (292)
                      ...|....+.+|++++|.|.........+.||+..     ..+...    ......++...   ....|.|.+++++|+|
T Consensus         5 tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa   84 (107)
T d1d5il1           5 TQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMG   84 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCE
Confidence            34456677889999999998866555678899742     111110    01112223222   2247999999999999


Q ss_pred             EEEEEEE
Q psy15128        108 FFVCSAL  114 (292)
Q Consensus       108 ~Y~C~~~  114 (292)
                      .|.|...
T Consensus        85 ~YyCa~~   91 (107)
T d1d5il1          85 IYYCLQY   91 (107)
T ss_dssp             EEEEEEC
T ss_pred             EEEeeec
Confidence            9999764

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.45  E-value=7.7e-07  Score=56.26  Aligned_cols=77  Identities=16%  Similarity=0.279  Sum_probs=49.5

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--e--EEee-ccC-CC----cceeEE--ee---ecEEEEccCCCC
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--S--QVLM-FPG-NA----YGHLHV--TQ---EGTLRIQGVQKE  104 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~--~~~~-~~~-~~----~~~~~~--~~---~~~l~i~~~~~~  104 (292)
                      ...+..+.+.+|+.++|.|.........+.|||..  +  .+.. ... ..    ..+...  ..   ...|+|.+++++
T Consensus         4 tQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1j8hd1           4 TQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMS   83 (115)
T ss_dssp             ECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGG
T ss_pred             EcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeecccccc
Confidence            34456778899999999999876555679999832  1  1111 110 00    011111  11   126999999999


Q ss_pred             CCeEEEEEEEeC
Q psy15128        105 DAGFFVCSALSV  116 (292)
Q Consensus       105 d~g~Y~C~~~~~  116 (292)
                      |+|.|.|.+...
T Consensus        84 Dsa~YyCa~~~~   95 (115)
T d1j8hd1          84 DAAEYFCAVSES   95 (115)
T ss_dssp             GCEEEEEEEESS
T ss_pred             CCccceeeecCC
Confidence            999999998653

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.44  E-value=5.4e-07  Score=56.34  Aligned_cols=74  Identities=16%  Similarity=0.351  Sum_probs=48.2

Q ss_pred             eCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--e--EEeec-----cCCCcceeEEee---ecEEEEccCCCCCCeE
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--S--QVLMF-----PGNAYGHLHVTQ---EGTLRIQGVQKEDAGF  108 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~--~~~~~-----~~~~~~~~~~~~---~~~l~i~~~~~~d~g~  108 (292)
                      ..|..+.+.+|++++|.|...+.....+.||+..  +  .+...     ......++....   ...|+|.+++++|+|.
T Consensus         8 QsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~   87 (109)
T d1bwwa_           8 QSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIAT   87 (109)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCce
Confidence            4455677889999999999876555578899832  1  11110     011112222222   2369999999999999


Q ss_pred             EEEEEE
Q psy15128        109 FVCSAL  114 (292)
Q Consensus       109 Y~C~~~  114 (292)
                      |.|.+.
T Consensus        88 YyCA~~   93 (109)
T d1bwwa_          88 YYCQQY   93 (109)
T ss_dssp             EEEEEC
T ss_pred             EEEeec
Confidence            999764

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.44  E-value=6.7e-07  Score=56.02  Aligned_cols=72  Identities=21%  Similarity=0.315  Sum_probs=47.4

Q ss_pred             eCCCccEEecCCcEEEEEEEeee--CCCeeEEEECC--e--EEeeccCCCcceeEEe-----eecEEEEccCCCCCCeEE
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGS--PLPSVFWTQEG--S--QVLMFPGNAYGHLHVT-----QEGTLRIQGVQKEDAGFF  109 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~--~--~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y  109 (292)
                      ..|..+.+.+|++++|.|...+.  ....+.|||..  .  ......   .++....     ....|+|.+++++|+|.|
T Consensus         4 Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~---~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   80 (112)
T d1sq2n_           4 QTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISK---GGRYVETVNSGSKSFSLRINDLTVEDGGTY   80 (112)
T ss_dssp             EECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCC---BTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             ecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeecc---CCcEeeEEecCCceeeeEecCCcCccCEEE
Confidence            44566778889999999988643  34579999831  1  111111   1112111     123799999999999999


Q ss_pred             EEEEEe
Q psy15128        110 VCSALS  115 (292)
Q Consensus       110 ~C~~~~  115 (292)
                      .|.+..
T Consensus        81 yCA~~~   86 (112)
T d1sq2n_          81 RCGLGV   86 (112)
T ss_dssp             EEEECB
T ss_pred             eEEEec
Confidence            998754

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.44  E-value=7e-07  Score=56.50  Aligned_cols=74  Identities=22%  Similarity=0.411  Sum_probs=47.9

Q ss_pred             eCCCccEEecCCcEEEEEEEeee-CCCeeEEEEC-----CeEEee---cc---------CCCcceeEEe-----eecEEE
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGS-PLPSVFWTQE-----GSQVLM---FP---------GNAYGHLHVT-----QEGTLR   97 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~-~~~~v~W~~~-----~~~~~~---~~---------~~~~~~~~~~-----~~~~l~   97 (292)
                      ..|....+.+|++++|.|.+.+. ....+.||+.     .+.+..   ..         +....+....     ....|+
T Consensus         3 Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   82 (115)
T d2atpb1           3 QTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLS   82 (115)
T ss_dssp             EECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEE
T ss_pred             eeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEe
Confidence            34566778899999999998763 4457899974     222210   00         0011122111     123799


Q ss_pred             EccCCCCCCeEEEEEEE
Q psy15128         98 IQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        98 i~~~~~~d~g~Y~C~~~  114 (292)
                      |.+++.+|+|.|.|.+.
T Consensus        83 I~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          83 IMNVKPEDSDFYFCATV   99 (115)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             ecccCCCCCcEEEEeEc
Confidence            99999999999999875

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.44  E-value=6.4e-07  Score=55.65  Aligned_cols=73  Identities=12%  Similarity=0.129  Sum_probs=47.9

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--CeE---e-------ccCCCceEEecCCCcccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQF---I-------DLESSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~---~-------~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                      |..+.+.+|++|+|.|.. .+.....+.|++.  |+.   +       ......++.....     .....|.|..+..+
T Consensus         8 P~~ltv~~G~svtl~C~~-s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~-----~~~~~L~I~~~~~~   81 (107)
T d1ospl1           8 SSSFSVSLGDRVTITCKA-SEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDS-----GKDYTLSITSLQTE   81 (107)
T ss_dssp             CSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECS-----SSSEEEEESSCCGG
T ss_pred             CCEEEECCCCCEEEEEec-CCCcccccEEEEcCCCccceeEEeeccccCCccccccceecC-----CCeEEeEEcccccc
Confidence            456789999999999986 4444457999982  221   1       1111222222221     22347999999999


Q ss_pred             ccceeEEEEee
Q psy15128        273 SDDQWKLIAKN  283 (292)
Q Consensus       273 ~~g~y~C~a~n  283 (292)
                      |+|.|.|.+..
T Consensus        82 Dsa~YyCa~~~   92 (107)
T d1ospl1          82 DVATYFCQQYW   92 (107)
T ss_dssp             GCSEEEEEECS
T ss_pred             cCCcEEEeecc
Confidence            99999998753

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.43  E-value=9.6e-07  Score=55.65  Aligned_cols=80  Identities=14%  Similarity=0.142  Sum_probs=48.5

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--Ce-E--e-ccCCCceEEecCCCcccc-----ccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQ-F--I-DLESSKRVSILGDPWFDS-----RRSRSIFGSVLGALS  273 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~-~--~-~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~~  273 (292)
                      |..+.+.+|+.|+|.|..........+.|++-  |+ +  + ....+.. ....++.+..     .....|.|..+..+|
T Consensus         6 P~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~-~~~~~~rf~~~~~~~~~~~~L~I~~~~~~D   84 (114)
T d3bp5a1           6 PAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLS-QPVQDARFQIIQLPNRHDFHMNILDTRRND   84 (114)
T ss_dssp             SSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEE-EESSCTTEEEEECTTSSEEEEEESSCCGGG
T ss_pred             CCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccc-cccccCcceEEEeCCCCEEEEEECccCcCC
Confidence            45678999999999998744444457899982  22 1  1 1001111 1111111111     122358999999999


Q ss_pred             cceeEEEEeecc
Q psy15128        274 DDQWKLIAKNIR  285 (292)
Q Consensus       274 ~g~y~C~a~n~~  285 (292)
                      +|.|.|.+....
T Consensus        85 sg~YyCa~~~~~   96 (114)
T d3bp5a1          85 SGIYLCGAISLH   96 (114)
T ss_dssp             CEEEEEEEECSS
T ss_pred             CeEEEEEEEeCC
Confidence            999999887544

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.43  E-value=9.9e-07  Score=55.22  Aligned_cols=76  Identities=9%  Similarity=0.271  Sum_probs=48.0

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEEC--Ce-E--Eeecc-------CCCcceeE----EeeecEEEEccCC
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE--GS-Q--VLMFP-------GNAYGHLH----VTQEGTLRIQGVQ  102 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~--~~-~--~~~~~-------~~~~~~~~----~~~~~~l~i~~~~  102 (292)
                      +...|....+.+|++++|.|...+ ....+.|||.  +. .  +....       .....+..    ......|+|.++.
T Consensus         4 V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (110)
T d2aq2a1           4 VTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESAT   82 (110)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCC
T ss_pred             EEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCC
Confidence            445566777889999999998754 3457999983  21 1  11000       00001111    1123479999999


Q ss_pred             CCCCeEEEEEEEe
Q psy15128        103 KEDAGFFVCSALS  115 (292)
Q Consensus       103 ~~d~g~Y~C~~~~  115 (292)
                      .+|+|.|.|....
T Consensus        83 ~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          83 PSQTSVYFCASGG   95 (110)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             HhhCEEEEEeeCC
Confidence            9999999998653

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.43  E-value=9.6e-07  Score=55.70  Aligned_cols=77  Identities=17%  Similarity=0.283  Sum_probs=49.6

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--Ce---Ee-ccCCCc------eEEecCCCcccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQ---FI-DLESSK------RVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~---~~-~~~~~~------~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                      |..+.+.+|++++|.|.. ...+...+.|++-  |.   .| ......      ++....+   .......|.|..++.+
T Consensus         7 P~~~~~~~G~~vtL~C~~-~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~sL~i~~~~~~   82 (114)
T d2cdea1           7 PQSLIILEGKNCTLQCNY-TVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLD---ADTKQSSLHITASQLS   82 (114)
T ss_dssp             CSEEEEETTCCCEEEEEE-CCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBC---SSSSEEEEEECSCCGG
T ss_pred             CCEEEEeCCCCEEEEEEE-cCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeec---CcccccccEEcccChh
Confidence            457789999999999997 5556678999982  11   11 100111      1111111   1123346999999999


Q ss_pred             ccceeEEEEeecc
Q psy15128        273 SDDQWKLIAKNIR  285 (292)
Q Consensus       273 ~~g~y~C~a~n~~  285 (292)
                      |+|.|.|.+.+..
T Consensus        83 Dsg~Y~Ca~~~~~   95 (114)
T d2cdea1          83 DSASYICVVSDRG   95 (114)
T ss_dssp             GCSEEEEEEECSC
T ss_pred             hCcccceeeecCC
Confidence            9999999998753

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=9.7e-07  Score=54.86  Aligned_cols=74  Identities=16%  Similarity=0.312  Sum_probs=48.6

Q ss_pred             cEEecCCcEEEEEEEeeeC----CCeeEEEECCeEEeeccCCC-------cceeEEe--eecEEEEccCCCCCCeEEEEE
Q psy15128         46 QKVGLNGIASFQCVAEGSP----LPSVFWTQEGSQVLMFPGNA-------YGHLHVT--QEGTLRIQGVQKEDAGFFVCS  112 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~-------~~~~~~~--~~~~l~i~~~~~~d~g~Y~C~  112 (292)
                      +....|++++|.|.+....    ...+.|.+++..+.......       ..+....  .+.+|.|.+++.+|+|.|.|.
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~   83 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV   83 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEE
Confidence            4577899999999875322    23578888776543221111       1222222  234899999999999999999


Q ss_pred             EEeCCcC
Q psy15128        113 ALSVAGS  119 (292)
Q Consensus       113 ~~~~~~~  119 (292)
                      +.+..+.
T Consensus        84 V~~~~~~   90 (105)
T d1dr9a1          84 VLKYEKD   90 (105)
T ss_dssp             EEECCTT
T ss_pred             EEeCCCC
Confidence            9865443

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.42  E-value=1.2e-06  Score=54.83  Aligned_cols=75  Identities=19%  Similarity=0.196  Sum_probs=48.0

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--CeE---ecc-------CCCceEEecCCCcccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQF---IDL-------ESSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~---~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                      |+.+.+.+|++++|.|..........+.|++.  |+.   |..       ....+.....+     .....|.|..+..+
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~L~I~~~~~~   79 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITED-----RKSSTLILPHATLR   79 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTT-----CSEEEEEESSCCGG
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeeccc-----CCeeeehhcccccC
Confidence            46788999999999998633344456899982  221   110       11111222111     23346999999999


Q ss_pred             ccceeEEEEeec
Q psy15128        273 SDDQWKLIAKNI  284 (292)
Q Consensus       273 ~~g~y~C~a~n~  284 (292)
                      |+|.|.|.+...
T Consensus        80 Dsa~YyCa~~~~   91 (110)
T d2esvd1          80 DTAVYYCIVVRS   91 (110)
T ss_dssp             GCEEEEEEEEES
T ss_pred             CceEEEEEEeCC
Confidence            999999988643

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.4e-07  Score=57.78  Aligned_cols=71  Identities=17%  Similarity=0.187  Sum_probs=46.9

Q ss_pred             eCCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        211 ASGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       211 ~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      ..|+.++|.|.|.+.+|.. .++|.+||+++............++.|....  .|   .+...+.+.|+|.+....-
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s--~l---~v~~~~~~~ytC~V~H~sl   88 (100)
T d1k5nb_          17 ENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLY--YT---EFTPTEKDEYACRVNHVTL   88 (100)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEE--EE---EECCCSSCCEEEEEECTTC
T ss_pred             cCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEE--Ee---EECCCCCCEEEEEEEeCCC
Confidence            4578889999995445544 8999999999854333344555555544221  22   3334566799999987654

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=3.8e-07  Score=57.57  Aligned_cols=79  Identities=20%  Similarity=0.182  Sum_probs=46.7

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--Ce---Ee---ccCCCceEEecC--CCccc---cccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQ---FI---DLESSKRVSILG--DPWFD---SRRSRSIFGSVLGA  271 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~---~~---~~~~~~~~~~~~--~~~~~---~~~~~~l~i~~~~~  271 (292)
                      |...++.+|++|+|.|.+........+.|++-  |.   ++   ............  ...+.   ......|.|..+..
T Consensus         7 P~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l~~   86 (114)
T d1akjd_           7 PLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRR   86 (114)
T ss_dssp             CCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSCCG
T ss_pred             CCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccCCC
Confidence            45667889999999998744444557899982  11   11   101111000000  00010   01223699999999


Q ss_pred             cccceeEEEEee
Q psy15128        272 LSDDQWKLIAKN  283 (292)
Q Consensus       272 ~~~g~y~C~a~n  283 (292)
                      +|+|.|.|.+..
T Consensus        87 ~Dsg~YyCa~~~   98 (114)
T d1akjd_          87 ENEGYYFCSALS   98 (114)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCCEEEeEeEcC
Confidence            999999999864

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.6e-06  Score=54.18  Aligned_cols=73  Identities=12%  Similarity=0.161  Sum_probs=45.3

Q ss_pred             CccEEecCCcEEEEEEEeeeC--CCeeEEEECC--eE---EeeccC----CCcceeEEee-----ecEEEEccCCCCCCe
Q psy15128         44 QDQKVGLNGIASFQCVAEGSP--LPSVFWTQEG--SQ---VLMFPG----NAYGHLHVTQ-----EGTLRIQGVQKEDAG  107 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~---~~~~~~----~~~~~~~~~~-----~~~l~i~~~~~~d~g  107 (292)
                      ..+...+|++++|.|......  ...+.|+|..  ..   +.....    ....+.....     ...|.|.+++.+|+|
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG   83 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSG   83 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCE
Confidence            345678999999999875432  2357798732  11   111111    1112222221     227999999999999


Q ss_pred             EEEEEEEeC
Q psy15128        108 FFVCSALSV  116 (292)
Q Consensus       108 ~Y~C~~~~~  116 (292)
                      .|.|.+...
T Consensus        84 ~Y~C~v~~~   92 (108)
T d1hkfa_          84 HYWCRIYRP   92 (108)
T ss_dssp             EEEEEEECT
T ss_pred             EEEEEEecC
Confidence            999998754

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=4.9e-07  Score=55.31  Aligned_cols=81  Identities=12%  Similarity=0.100  Sum_probs=46.1

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeee-CC-CeeEEEECCeEEeeccCCC---cceeEEeeecEEEEccCCCCCCeEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGS-PL-PSVFWTQEGSQVLMFPGNA---YGHLHVTQEGTLRIQGVQKEDAGFF  109 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~Y  109 (292)
                      .+|.+.+.+.. ....|+.++|.|.+.|+ |. ..+.|.++|..+.......   .....+...+.|.+   ..++.+.|
T Consensus         4 ~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v---~~~~~~~y   79 (100)
T d1k5nb_           4 RTPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEF---TPTEKDEY   79 (100)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEE---CCCSSCCE
T ss_pred             CCCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEE---CCCCCCEE
Confidence            34554443211 23568889999999996 43 3789999998762111000   00011111223444   44567789


Q ss_pred             EEEEEeCCcC
Q psy15128        110 VCSALSVAGS  119 (292)
Q Consensus       110 ~C~~~~~~~~  119 (292)
                      +|.+.+....
T Consensus        80 tC~V~H~sl~   89 (100)
T d1k5nb_          80 ACRVNHVTLS   89 (100)
T ss_dssp             EEEEECTTCS
T ss_pred             EEEEEeCCCC
Confidence            9999986544

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.40  E-value=5.9e-07  Score=56.74  Aligned_cols=77  Identities=14%  Similarity=0.235  Sum_probs=48.0

Q ss_pred             EeCCCccEEecCCcEEEEEEEeee-CCCeeEEEEC--CeE---EeeccCC-Cc----ceeEE--ee---ecEEEEccCCC
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGS-PLPSVFWTQE--GSQ---VLMFPGN-AY----GHLHV--TQ---EGTLRIQGVQK  103 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~-~~~~v~W~~~--~~~---~~~~~~~-~~----~~~~~--~~---~~~l~i~~~~~  103 (292)
                      ...+..+.+.+|++++|.|..... ....+.|||.  +..   +...... ..    .+...  ..   ...|.|.+++.
T Consensus         4 tQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   83 (114)
T d2ak4d1           4 TQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQV   83 (114)
T ss_dssp             ECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             EecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccccc
Confidence            345667788999999999987543 3446789983  221   1111111 10    11111  11   22799999999


Q ss_pred             CCCeEEEEEEEeC
Q psy15128        104 EDAGFFVCSALSV  116 (292)
Q Consensus       104 ~d~g~Y~C~~~~~  116 (292)
                      +|+|.|.|.+...
T Consensus        84 ~Dsg~YyCa~~~~   96 (114)
T d2ak4d1          84 VDSAVYFCALSGF   96 (114)
T ss_dssp             GGCEEEEEEEECS
T ss_pred             ccCCCceEeCCCC
Confidence            9999999987654

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.39  E-value=1.6e-06  Score=54.42  Aligned_cols=76  Identities=18%  Similarity=0.317  Sum_probs=48.4

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEEC--Ce--EEee-ccCCC----cceeEEe-----eecEEEEccCCCCC
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE--GS--QVLM-FPGNA----YGHLHVT-----QEGTLRIQGVQKED  105 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~--~~--~~~~-~~~~~----~~~~~~~-----~~~~l~i~~~~~~d  105 (292)
                      ...|..+.+.+|++++|.|...+.....+.||+.  ++  .... .....    ..+....     ....|.|.++.++|
T Consensus         4 ~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (111)
T d1bd2d1           4 KQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGD   83 (111)
T ss_dssp             ECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             EccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccc
Confidence            3445567788999999999887655567889983  21  1111 00000    0111111     12379999999999


Q ss_pred             CeEEEEEEEe
Q psy15128        106 AGFFVCSALS  115 (292)
Q Consensus       106 ~g~Y~C~~~~  115 (292)
                      +|.|.|.+..
T Consensus        84 sa~YyCa~~~   93 (111)
T d1bd2d1          84 SAVYFCAAME   93 (111)
T ss_dssp             CEEEEEEEES
T ss_pred             cEEEEeeccC
Confidence            9999998763

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.39  E-value=4.2e-07  Score=57.57  Aligned_cols=82  Identities=17%  Similarity=0.203  Sum_probs=49.4

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeE--cCe-E--eccCCCceEEe--cCCCcccc-----cccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKK--NGQ-F--IDLESSKRVSI--LGDPWFDS-----RRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~--~g~-~--~~~~~~~~~~~--~~~~~~~~-----~~~~~l~i~~~~~~  272 (292)
                      ++.+.+.+|++++|.|..........+.|++  .|+ +  |..........  ...+.+..     .....|.|..++.+
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~   86 (116)
T d1tvda_           7 SPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTE   86 (116)
T ss_dssp             SCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGG
T ss_pred             CCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCcccc
Confidence            4677899999999999863444556899987  222 1  11111111111  01111111     12236889999999


Q ss_pred             ccceeEEEEeeccc
Q psy15128        273 SDDQWKLIAKNIRN  286 (292)
Q Consensus       273 ~~g~y~C~a~n~~g  286 (292)
                      |+|.|.|.+....+
T Consensus        87 Dsg~YyCa~~~~~~  100 (116)
T d1tvda_          87 DSATYYCAFTLPPP  100 (116)
T ss_dssp             GCEEEEEEEECTTT
T ss_pred             ccccceeeEecCCC
Confidence            99999998876543

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.39  E-value=3.3e-07  Score=56.72  Aligned_cols=72  Identities=24%  Similarity=0.404  Sum_probs=45.8

Q ss_pred             CccEEecCCcEEEEEEEeeeCCCeeEEEECC--e--EEeecc-----CCCcceeEEe---eecEEEEccCCCCCCeEEEE
Q psy15128         44 QDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--S--QVLMFP-----GNAYGHLHVT---QEGTLRIQGVQKEDAGFFVC  111 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~--~~~~~~-----~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C  111 (292)
                      ..+.+.+|++++|.|.........+.|||..  .  .+....     .....+....   ....|.|.+++++|+|.|.|
T Consensus         6 ~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   85 (103)
T d8faba1           6 PSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYC   85 (103)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEe
Confidence            3566788999999998765555578999832  1  111100     0111111111   12379999999999999999


Q ss_pred             EEEe
Q psy15128        112 SALS  115 (292)
Q Consensus       112 ~~~~  115 (292)
                      .+..
T Consensus        86 A~~~   89 (103)
T d8faba1          86 QAWD   89 (103)
T ss_dssp             EEEE
T ss_pred             eecC
Confidence            7653

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.38  E-value=1.1e-06  Score=54.30  Aligned_cols=74  Identities=15%  Similarity=0.320  Sum_probs=46.3

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--e--EEeecc-----CCCcceeEEe---eecEEEEccCCCCCCe
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--S--QVLMFP-----GNAYGHLHVT---QEGTLRIQGVQKEDAG  107 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~--~~~~~~-----~~~~~~~~~~---~~~~l~i~~~~~~d~g  107 (292)
                      ...|..+.+.+|++++|.|.... ....+.||+..  .  ......     .....++...   ....|.|.++..+|+|
T Consensus         4 tQsP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa   82 (104)
T d1yqvl1           4 TQSPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAA   82 (104)
T ss_dssp             EEESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eCcCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCC
Confidence            34566677889999999998643 34468999842  1  111100     0111112211   2237999999999999


Q ss_pred             EEEEEEE
Q psy15128        108 FFVCSAL  114 (292)
Q Consensus       108 ~Y~C~~~  114 (292)
                      .|.|...
T Consensus        83 ~YyCa~~   89 (104)
T d1yqvl1          83 TYYCQQW   89 (104)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEec
Confidence            9999753

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.38  E-value=6.6e-07  Score=56.37  Aligned_cols=81  Identities=17%  Similarity=0.243  Sum_probs=50.0

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--CeE---e-ccCCCceEEecCCCc---cccccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQF---I-DLESSKRVSILGDPW---FDSRRSRSIFGSVLGALSDD  275 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~---~-~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~~~g  275 (292)
                      |..+.+.+|++++|.|.+ .+.....+.|++-  |+.   + .............-.   ........|.|..+..+|+|
T Consensus         7 P~~v~v~~G~sv~L~C~~-s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg   85 (113)
T d2bnqd1           7 PAALSVPEGENLVLNCSF-TDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSA   85 (113)
T ss_dssp             SSEEEEETTCCEEEEEEE-SCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCE
T ss_pred             CCEEEEcCCCCEEEEEEE-ecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCc
Confidence            567788999999999997 5555567999982  221   1 001111111111100   01123347999999999999


Q ss_pred             eeEEEEeeccc
Q psy15128        276 QWKLIAKNIRN  286 (292)
Q Consensus       276 ~y~C~a~n~~g  286 (292)
                      .|.|.+....|
T Consensus        86 ~YyCa~~~~~~   96 (113)
T d2bnqd1          86 TYLCAVRPTSG   96 (113)
T ss_dssp             EEEEEEEESSS
T ss_pred             EEeEeEecCCC
Confidence            99999975543

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.37  E-value=7.3e-07  Score=55.27  Aligned_cols=73  Identities=21%  Similarity=0.166  Sum_probs=47.3

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeE--cCeEe---c-------cCCCceEEecCCCcccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKK--NGQFI---D-------LESSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~--~g~~~---~-------~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                      |..+.+.+|++++|.|.. .......+.|++  .|+..   .       .....+.....     ......|.|..+..+
T Consensus         8 P~s~~~~~G~svtl~C~~-s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~l~~~   81 (107)
T d1c5cl1           8 PSSLSASLGERVSLTCRT-SQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSR-----SGSDYSLTISSLESE   81 (107)
T ss_dssp             CSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCCGG
T ss_pred             CCEEEECCCCCEEEEEEe-CCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecc-----cCCEEEEEEhhhccc
Confidence            456778999999999997 555556799998  23221   0       01111111111     112347999999999


Q ss_pred             ccceeEEEEee
Q psy15128        273 SDDQWKLIAKN  283 (292)
Q Consensus       273 ~~g~y~C~a~n  283 (292)
                      |+|.|.|.+.+
T Consensus        82 Dsa~YyCa~~~   92 (107)
T d1c5cl1          82 DFADYYCLQYA   92 (107)
T ss_dssp             GCSEEEEEECS
T ss_pred             CCeEEEEecCc
Confidence            99999998754

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=9.1e-07  Score=53.62  Aligned_cols=75  Identities=15%  Similarity=0.184  Sum_probs=51.7

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      .+|.+...|. ..+..|++++|.|.........+.|+|++......      .........+.|.+++.+|+|.|+|...
T Consensus         4 PkP~Lsa~P~-~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~------~~~~~~~a~F~l~~v~~~~~G~Y~C~y~   76 (96)
T d1ucta2           4 GKPFLSADRG-LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ------HQSGEHPANFSLGPVDLNVSGIYRCYGW   76 (96)
T ss_dssp             CCCEEEESSC-SEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS------EEECSSSEEEECCSCCGGGCEEEEEEEE
T ss_pred             CCCEEEEeCC-CccCCCCeEEEEEeCCCCCceEEEEEECCcccceE------EcCCCcccEEEEeccccccCcEEEEEEE
Confidence            3566666764 46899999999997633344478899988532110      1111123578999999999999999876


Q ss_pred             eC
Q psy15128        115 SV  116 (292)
Q Consensus       115 ~~  116 (292)
                      ..
T Consensus        77 ~~   78 (96)
T d1ucta2          77 YN   78 (96)
T ss_dssp             CT
T ss_pred             cC
Confidence            43

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.37  E-value=5.6e-07  Score=56.86  Aligned_cols=83  Identities=14%  Similarity=0.108  Sum_probs=49.1

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeE--cCeE---ec-c-CCCceEEecCCCccc---ccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKK--NGQF---ID-L-ESSKRVSILGDPWFD---SRRSRSIFGSVLGALSD  274 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~--~g~~---~~-~-~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~~~  274 (292)
                      +..+.+.+|++|+|.|..........+.|++  .|..   |. . ...............   ......|.|..+..+|+
T Consensus         7 ~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   86 (114)
T d2ak4d1           7 QTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDS   86 (114)
T ss_dssp             CCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGC
T ss_pred             CCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccC
Confidence            4567899999999999853344445688988  2221   10 0 011111111100010   02234689999999999


Q ss_pred             ceeEEEEeecccc
Q psy15128        275 DQWKLIAKNIRNQ  287 (292)
Q Consensus       275 g~y~C~a~n~~g~  287 (292)
                      |.|.|.+....+.
T Consensus        87 g~YyCa~~~~~~~   99 (114)
T d2ak4d1          87 AVYFCALSGFYNT   99 (114)
T ss_dssp             EEEEEEEECSBTT
T ss_pred             CCceEeCCCCCCC
Confidence            9999988776553

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.37  E-value=2.2e-06  Score=52.24  Aligned_cols=80  Identities=15%  Similarity=0.229  Sum_probs=47.2

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeee-C-CCeeEEEECCeEEeec--cCC--CcceeEEeeecEEEEccCCCCCCeEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGS-P-LPSVFWTQEGSQVLMF--PGN--AYGHLHVTQEGTLRIQGVQKEDAGFF  109 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~--~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y  109 (292)
                      +|.+.+.+.. .+..|+..+|.|.+.|+ | ...+.|+++|..+...  ...  ......+...+.|.+.   .++.+.|
T Consensus         3 pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~---~~~~~~y   78 (100)
T d1muja1           3 APQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFI---PSDDDIY   78 (100)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEEC---CCTTCCE
T ss_pred             CCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEc---CCCCCEE
Confidence            4555544322 34568889999999996 3 3479999998765311  000  0111122223345554   3456789


Q ss_pred             EEEEEeCCcC
Q psy15128        110 VCSALSVAGS  119 (292)
Q Consensus       110 ~C~~~~~~~~  119 (292)
                      +|++.+....
T Consensus        79 tC~V~H~sl~   88 (100)
T d1muja1          79 DCKVEHWGLE   88 (100)
T ss_dssp             EEEEECTTSS
T ss_pred             EEEEEECCCC
Confidence            9999987543

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.6e-07  Score=60.54  Aligned_cols=80  Identities=20%  Similarity=0.160  Sum_probs=48.7

Q ss_pred             ceEEeCCCceEEEeeCCCCCC----CCeEEEeEcCeE--------eccCC-----------CceEEecCCCccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQP----EPTLHWKKNGQF--------IDLES-----------SKRVSILGDPWFDSRRSRS  263 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p----~~~~~W~~~g~~--------~~~~~-----------~~~~~~~~~~~~~~~~~~~  263 (292)
                      .+.+.+|++++|.|.. ...+    ...+.|++....        +....           ..+..+..+..  ......
T Consensus        13 ~v~~~~G~~v~L~C~~-~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~~s   89 (124)
T d1eaja_          13 MIEKAKGETAYLPCKF-TLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDL--KSGDAS   89 (124)
T ss_dssp             EEEEETTSCEEECCBE-ECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCG--GGTBCC
T ss_pred             eEEEECCCcEEEeEEE-ecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCC--CCCEEE
Confidence            4677899999999996 3322    236889873111        00000           01111111100  012246


Q ss_pred             cccccccccccceeEEEEeecccccc
Q psy15128        264 IFGSVLGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       264 l~i~~~~~~~~g~y~C~a~n~~g~~~  289 (292)
                      |.|..++..|+|.|.|.+.|..|..+
T Consensus        90 L~I~~v~~~D~G~Y~C~v~~~~~~~~  115 (124)
T d1eaja_          90 INVTNLQLSDIGTYQCKVKKAPGVAN  115 (124)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEEcccEEccCEEEEEEEEECCCeEE
Confidence            89999999999999999999887654

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.36  E-value=5.7e-07  Score=55.79  Aligned_cols=73  Identities=15%  Similarity=0.166  Sum_probs=46.3

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--CeEe---c-------cCCCceEEecCCCcccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQFI---D-------LESSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~~---~-------~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                      |....+.+|++++|.|.. .......+.|++.  |+..   .       .....++....     ......|.|..+..+
T Consensus         8 P~slsv~~G~svtl~C~~-s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~-----~~~~~~L~I~~~~~~   81 (106)
T d1i8ka_           8 PASLSVATGEKVTIRCMT-STDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSG-----TGTDFVFTIENTLSE   81 (106)
T ss_dssp             CSEEECCTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCCGG
T ss_pred             CCEEEECCCCCEEEEEEe-CCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeC-----CCCeeeecccCCccc
Confidence            456778999999999986 4444457999972  3211   0       01111111110     112346999999999


Q ss_pred             ccceeEEEEee
Q psy15128        273 SDDQWKLIAKN  283 (292)
Q Consensus       273 ~~g~y~C~a~n  283 (292)
                      |+|.|.|.+.+
T Consensus        82 Dsa~YyCa~~~   92 (106)
T d1i8ka_          82 DVGDYYCLQSF   92 (106)
T ss_dssp             GCEEEEEEECS
T ss_pred             cCEEEeEecCc
Confidence            99999998654

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.35  E-value=1.2e-06  Score=55.84  Aligned_cols=79  Identities=22%  Similarity=0.331  Sum_probs=46.7

Q ss_pred             CcceEEeCCCceEEEeeCCCC---CCCCeEEEeEc--Ce----Ee-ccCCCc-----------eEEecCCCccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKG---QPEPTLHWKKN--GQ----FI-DLESSK-----------RVSILGDPWFDSRRSRS  263 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~---~p~~~~~W~~~--g~----~~-~~~~~~-----------~~~~~~~~~~~~~~~~~  263 (292)
                      +....+..|++++|.|.....   .....+.|++.  +.    .+ ....+.           |+.+..+.   .....+
T Consensus         6 p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~s   82 (119)
T d1neua_           6 DREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDP---SWKDGS   82 (119)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBG---GGTBCC
T ss_pred             CCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEEC---CCCEEE
Confidence            456788999999999984222   23348999872  11    11 000111           11111110   112246


Q ss_pred             cccccccccccceeEEEEeeccc
Q psy15128        264 IFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       264 l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      |.|..++..|+|.|.|.+.+..+
T Consensus        83 L~I~~v~~~DsG~Y~C~v~~~~~  105 (119)
T d1neua_          83 IVIHNLDYSDNGTFTCDVKNPPD  105 (119)
T ss_dssp             EEECSCCGGGCEEEEEEEEC---
T ss_pred             EEECCCChHHCEEEEEEEEECCC
Confidence            99999999999999999998654

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.35  E-value=5.8e-07  Score=56.11  Aligned_cols=74  Identities=19%  Similarity=0.288  Sum_probs=46.8

Q ss_pred             eCCCccEEecCCcEEEEEEEeee-CCCeeEEEECC--e---EEeecc----CCCcceeEEe---eecEEEEccCCCCCCe
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGS-PLPSVFWTQEG--S---QVLMFP----GNAYGHLHVT---QEGTLRIQGVQKEDAG  107 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~-~~~~v~W~~~~--~---~~~~~~----~~~~~~~~~~---~~~~l~i~~~~~~d~g  107 (292)
                      ..|....+.+|++++|.|..... ....+.|||..  .   .+....    .....+....   ....|.|.+++++|+|
T Consensus         6 Q~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa   85 (108)
T d2fx7l1           6 QSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFA   85 (108)
T ss_dssp             CSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             eeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccE
Confidence            44566778899999999987543 34468899842  1   111000    0111122211   1236999999999999


Q ss_pred             EEEEEEE
Q psy15128        108 FFVCSAL  114 (292)
Q Consensus       108 ~Y~C~~~  114 (292)
                      .|.|.+.
T Consensus        86 ~YyCa~~   92 (108)
T d2fx7l1          86 VYYCQQY   92 (108)
T ss_dssp             EEEEEEC
T ss_pred             EEeeecC
Confidence            9999764

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.34  E-value=1.1e-06  Score=55.25  Aligned_cols=76  Identities=21%  Similarity=0.362  Sum_probs=47.6

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEEC--Ce-EEeec--cCCCc--ce--eE----EeeecEEEEccCCCCCC
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE--GS-QVLMF--PGNAY--GH--LH----VTQEGTLRIQGVQKEDA  106 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~--~~-~~~~~--~~~~~--~~--~~----~~~~~~l~i~~~~~~d~  106 (292)
                      ...|..+.+.+|++++|.|.... ....+.|||.  +. ...+.  .....  ..  ..    ......|.|.+++++|+
T Consensus         5 ~Q~P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (113)
T d1h5ba_           5 EQSPSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDS   83 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGC
T ss_pred             EECCCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHC
Confidence            34566777889999999998764 3447899983  21 11110  00000  00  00    01123699999999999


Q ss_pred             eEEEEEEEeC
Q psy15128        107 GFFVCSALSV  116 (292)
Q Consensus       107 g~Y~C~~~~~  116 (292)
                      |.|.|.+...
T Consensus        84 a~YyCa~~~~   93 (113)
T d1h5ba_          84 GTYFCAAEAS   93 (113)
T ss_dssp             EEEEEEEECS
T ss_pred             EEEEEEecCC
Confidence            9999987654

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.34  E-value=1.4e-06  Score=54.95  Aligned_cols=75  Identities=17%  Similarity=0.352  Sum_probs=47.0

Q ss_pred             eCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--e--EEe-eccCCC----cceeEE--e---eecEEEEccCCCCCC
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--S--QVL-MFPGNA----YGHLHV--T---QEGTLRIQGVQKEDA  106 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~--~~~-~~~~~~----~~~~~~--~---~~~~l~i~~~~~~d~  106 (292)
                      ..|....+.+|++++|.|...+. ...+.||+..  .  .+. ......    ..+...  .   ....|+|.+++.+|+
T Consensus         5 Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (115)
T d1ogad1           5 QSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDT   83 (115)
T ss_dssp             EECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGC
T ss_pred             eCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccce
Confidence            44566778899999999987643 3479999832  1  111 001000    011111  1   123799999999999


Q ss_pred             eEEEEEEEeC
Q psy15128        107 GFFVCSALSV  116 (292)
Q Consensus       107 g~Y~C~~~~~  116 (292)
                      |.|.|.+...
T Consensus        84 a~YyCa~~~~   93 (115)
T d1ogad1          84 GLYLCAGAGS   93 (115)
T ss_dssp             EEEEEEEECT
T ss_pred             eeEcccccCC
Confidence            9999987643

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.34  E-value=1e-06  Score=54.69  Aligned_cols=73  Identities=16%  Similarity=0.170  Sum_probs=46.7

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--C-eE-e-cc-------CCCceEEecCCCcccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--G-QF-I-DL-------ESSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g-~~-~-~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                      |..+.+.+|++|+|.|.. .......+.|++-  | .+ + ..       ....+......     .....|.|..+.++
T Consensus         7 P~~l~~~~G~svtl~C~~-s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s-----~~~~~L~I~~~~~~   80 (106)
T d1a0ql1           7 PSSLSASLGGKVTITCKA-SQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGS-----GRDYSFSISNLEPE   80 (106)
T ss_dssp             CSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEECSCCGG
T ss_pred             CCEEEECCCCCEEEEEEc-CCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecC-----CCEeeeEehhhccc
Confidence            456788999999999986 4555557999982  2 11 1 00       01111111111     23346999999999


Q ss_pred             ccceeEEEEee
Q psy15128        273 SDDQWKLIAKN  283 (292)
Q Consensus       273 ~~g~y~C~a~n  283 (292)
                      |+|.|.|.+.+
T Consensus        81 DsA~YyCa~~~   91 (106)
T d1a0ql1          81 DIATYYCLQYY   91 (106)
T ss_dssp             GCSEEEEEECS
T ss_pred             CCEeEEEEEeC
Confidence            99999998754

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=3.9e-07  Score=55.81  Aligned_cols=69  Identities=19%  Similarity=0.176  Sum_probs=44.9

Q ss_pred             CCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        212 SGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      .|+.++|.|.+.+.+|.. .++|.+||+.+............++.|...  ..|   .+...+.+.|+|.++...
T Consensus        17 ~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~--s~l---~v~~~~~~~ytC~V~H~s   86 (99)
T d1lk2b_          17 NGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYIL--AHT---EFTPTETDTYACRVKHDS   86 (99)
T ss_dssp             TTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEE--EEE---EECCCSSCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEE--EEe---EecCcCCCEEEEEEEeCC
Confidence            577899999995445544 899999999886433333444555544322  122   233456679999998754

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=3.1e-07  Score=57.20  Aligned_cols=80  Identities=18%  Similarity=0.246  Sum_probs=48.7

Q ss_pred             ceEEeCCCceEEEeeCCCCCC---CCeEEEeEcCeEeccCCCceEEecC--CCc--cccccccccccccccccccceeEE
Q psy15128        207 DTRVASGETALLECGPPKGQP---EPTLHWKKNGQFIDLESSKRVSILG--DPW--FDSRRSRSIFGSVLGALSDDQWKL  279 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~g~~~~~~~~~~~~~~~--~~~--~~~~~~~~l~i~~~~~~~~g~y~C  279 (292)
                      .+++..|+.++|.|.......   ...+.|.+++..+............  .+.  .......+|.|..++.+|+|.|.|
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C   82 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEE
Confidence            467889999999998632221   2368898887665211111111111  000  011123469999999999999999


Q ss_pred             EEeeccc
Q psy15128        280 IAKNIRN  286 (292)
Q Consensus       280 ~a~n~~g  286 (292)
                      .+.+..+
T Consensus        83 ~V~~~~~   89 (105)
T d1dr9a1          83 VVLKYEK   89 (105)
T ss_dssp             EEEECCT
T ss_pred             EEEeCCC
Confidence            9976544

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.32  E-value=1.2e-06  Score=54.86  Aligned_cols=78  Identities=13%  Similarity=0.119  Sum_probs=48.7

Q ss_pred             CcceEEeCCCceEEEeeCCCC-CCCCeEEEeEc--Ce---EeccCCCceEEecCCCccccccccccccccccccccceeE
Q psy15128        205 PKDTRVASGETALLECGPPKG-QPEPTLHWKKN--GQ---FIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWK  278 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~--g~---~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~  278 (292)
                      |..+.+..|++++|.|..... .....+.|++.  |+   .+. ....++....+.   ......|.|..++.+|+|.|.
T Consensus         6 P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~-~~~gr~~~~~~~---~~~~~~L~I~~l~~~Dsa~Yy   81 (112)
T d1sq2n_           6 PRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESI-SKGGRYVETVNS---GSKSFSLRINDLTVEDGGTYR   81 (112)
T ss_dssp             CSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEEC-CCBTTEEEEEET---TTTEEEEEECSCCGGGCEEEE
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeee-ccCCcEeeEEec---CCceeeeEecCCcCccCEEEe
Confidence            456778899999999986322 34568999982  21   111 122222211111   112346899999999999999


Q ss_pred             EEEeeccc
Q psy15128        279 LIAKNIRN  286 (292)
Q Consensus       279 C~a~n~~g  286 (292)
                      |.+....+
T Consensus        82 CA~~~~~~   89 (112)
T d1sq2n_          82 CGLGVAGG   89 (112)
T ss_dssp             EEECBTTT
T ss_pred             EEEecCCC
Confidence            98876543

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=1.8e-06  Score=55.08  Aligned_cols=77  Identities=10%  Similarity=0.090  Sum_probs=47.4

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeE--cCeE------e-cc-CCCceEEecCCCcccc--------cccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKK--NGQF------I-DL-ESSKRVSILGDPWFDS--------RRSRSIFG  266 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~--~g~~------~-~~-~~~~~~~~~~~~~~~~--------~~~~~l~i  266 (292)
                      |....+.+|++++|.|.+ .+.....+.|++  .|+.      + .. ................        .....|.|
T Consensus         8 P~~~~~~~G~~vtL~C~~-~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I   86 (122)
T d1nezg_           8 PKKMDAELGQKVDLVCEV-LGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTL   86 (122)
T ss_dssp             SSCEEECTTCCEEEEEEE-ESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEE-cCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEEE
Confidence            456788999999999997 556666899988  2221      1 11 1111111111100000        11235999


Q ss_pred             ccccccccceeEEEEe
Q psy15128        267 SVLGALSDDQWKLIAK  282 (292)
Q Consensus       267 ~~~~~~~~g~y~C~a~  282 (292)
                      ..++.+|+|.|.|.+.
T Consensus        87 ~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          87 NKFSKENEGYYFCSVI  102 (122)
T ss_dssp             SSCCGGGCEEEEEEEE
T ss_pred             cccccCCCEEEEeeEe
Confidence            9999999999999875

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.31  E-value=1.1e-06  Score=55.22  Aligned_cols=77  Identities=17%  Similarity=0.157  Sum_probs=47.9

Q ss_pred             CcceEEeCCCceEEEeeCCCC-CCCCeEEEeEc--CeE--eccCCCceEEecCCCccccccccccccccccccccceeEE
Q psy15128        205 PKDTRVASGETALLECGPPKG-QPEPTLHWKKN--GQF--IDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKL  279 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~--g~~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C  279 (292)
                      |..+.+.+|++++|.|.+... .+...+.|++.  |..  .......+.....+.   ......|.|..+..+|+|.|.|
T Consensus         7 P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~l~~~Dsa~YyC   83 (113)
T d1vesa_           7 PRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNK---GSKSFSLRISDLRVEDSGTYKC   83 (113)
T ss_dssp             CSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEET---TTTEEEEEECSCCGGGCEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeEC---CCCceeeeecccccCCcceEee
Confidence            456788899999999986322 34457899972  221  111122222221111   1222368999999999999999


Q ss_pred             EEeec
Q psy15128        280 IAKNI  284 (292)
Q Consensus       280 ~a~n~  284 (292)
                      .+...
T Consensus        84 a~~~~   88 (113)
T d1vesa_          84 QAFYS   88 (113)
T ss_dssp             EEEEE
T ss_pred             eeecc
Confidence            98654

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.31  E-value=6.8e-07  Score=54.70  Aligned_cols=81  Identities=7%  Similarity=0.065  Sum_probs=45.4

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeee-CC-CeeEEEECCeEEeeccC---CCcceeEEeeecEEEEccCCCCCCeEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGS-PL-PSVFWTQEGSQVLMFPG---NAYGHLHVTQEGTLRIQGVQKEDAGFF  109 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~Y  109 (292)
                      .+|.+.+.+.. ....|+.++|.|.+.|+ |. ..++|.++|..+.....   .......+...+.|.+   ..++.+.|
T Consensus         3 ~~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v---~~~~~~~y   78 (99)
T d1lk2b_           3 KTPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEF---TPTETDTY   78 (99)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEE---CCCSSCCE
T ss_pred             CCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEe---cCcCCCEE
Confidence            34554443221 13457889999999996 33 37999999876521100   0000011122234444   34566789


Q ss_pred             EEEEEeCCcC
Q psy15128        110 VCSALSVAGS  119 (292)
Q Consensus       110 ~C~~~~~~~~  119 (292)
                      +|.+.+....
T Consensus        79 tC~V~H~sl~   88 (99)
T d1lk2b_          79 ACRVKHDSMA   88 (99)
T ss_dssp             EEEEECTTSS
T ss_pred             EEEEEeCCCC
Confidence            9999886543

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.31  E-value=1.2e-06  Score=54.36  Aligned_cols=73  Identities=16%  Similarity=0.222  Sum_probs=46.9

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--Ce---Eecc-------CCCceEEecCCCcccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQ---FIDL-------ESSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~---~~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                      |....+.+|++|+|.|.. .......+.|++.  |+   .|..       ....++....     ......|.|..+.++
T Consensus         8 P~sl~~~~G~svtL~C~~-s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~l~~~   81 (107)
T d1tjgl1           8 PSSLSASVGDRITITCRA-SQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSG-----SGTEFTLTISTLRPE   81 (107)
T ss_dssp             CSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCCGG
T ss_pred             CCEEEECCCCCEEEEEEE-CCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEec-----cCCEEEEEeccceeC
Confidence            466788999999999997 4444567889882  22   1211       1111111111     122346999999999


Q ss_pred             ccceeEEEEee
Q psy15128        273 SDDQWKLIAKN  283 (292)
Q Consensus       273 ~~g~y~C~a~n  283 (292)
                      |++.|.|.+.+
T Consensus        82 DsA~YyCa~~~   92 (107)
T d1tjgl1          82 DFATYYCQQLH   92 (107)
T ss_dssp             GCSEEEEEECS
T ss_pred             cCceEEEEECc
Confidence            99999997653

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=1.6e-06  Score=53.87  Aligned_cols=72  Identities=19%  Similarity=0.246  Sum_probs=47.0

Q ss_pred             cCCcEEEEEEEeee-CC-CeeEEEECCeEEeec-----cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCee
Q psy15128         50 LNGIASFQCVAEGS-PL-PSVFWTQEGSQVLMF-----PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT  121 (292)
Q Consensus        50 ~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~  121 (292)
                      .++.++|.|.+.++ |. ..|.|.++|..+...     .........+...+.|.|..-.......|+|.+.+......
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~~p   97 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP   97 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSC
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCCCC
Confidence            46789999999986 43 479999998765311     11111122334455788877766667789999998655443

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.30  E-value=6.5e-07  Score=56.67  Aligned_cols=73  Identities=15%  Similarity=0.249  Sum_probs=46.6

Q ss_pred             CCCccEEecCCcEEEEEEEeeeCCCeeEEEECC-----eEEeec----cCCCcceeEEe---eecEEEEccCCCCCCeEE
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG-----SQVLMF----PGNAYGHLHVT---QEGTLRIQGVQKEDAGFF  109 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~-----~~~~~~----~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y  109 (292)
                      .|..+.+.+|++++|.|...+.....+.|||..     ..+...    ......++...   ....|.|.+++++|+|.|
T Consensus         7 ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavY   86 (119)
T d1f3rb2           7 SPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATY   86 (119)
T ss_dssp             ETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEE
T ss_pred             cCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEE
Confidence            345566788999999998765544578999842     111100    01111222222   123799999999999999


Q ss_pred             EEEEE
Q psy15128        110 VCSAL  114 (292)
Q Consensus       110 ~C~~~  114 (292)
                      .|...
T Consensus        87 yCa~~   91 (119)
T d1f3rb2          87 FCYQY   91 (119)
T ss_dssp             EEEEE
T ss_pred             Eeecc
Confidence            99764

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.29  E-value=2.4e-06  Score=53.96  Aligned_cols=78  Identities=15%  Similarity=0.147  Sum_probs=47.0

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc-----CeEec----cCCCceEEecC---CCcc-----ccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN-----GQFID----LESSKRVSILG---DPWF-----DSRRSRSIFGS  267 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~-----g~~~~----~~~~~~~~~~~---~~~~-----~~~~~~~l~i~  267 (292)
                      |....+.+|++++|.|.+........+.|++-     ++.+.    ..........+   ...+     .......|.|.
T Consensus         5 P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   84 (115)
T d2atpb1           5 PSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIM   84 (115)
T ss_dssp             CSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEEC
T ss_pred             CCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeec
Confidence            45678899999999999743345567899873     22221    01111111100   0000     01223468899


Q ss_pred             cccccccceeEEEEe
Q psy15128        268 VLGALSDDQWKLIAK  282 (292)
Q Consensus       268 ~~~~~~~g~y~C~a~  282 (292)
                      .+..+|+|.|.|.+.
T Consensus        85 ~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          85 NVKPEDSDFYFCATV   99 (115)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCCCcEEEEeEc
Confidence            999999999999875

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.28  E-value=2.3e-06  Score=53.47  Aligned_cols=75  Identities=25%  Similarity=0.384  Sum_probs=47.0

Q ss_pred             EeCCCccEEecCCcEEEEEEEeee----CCCeeEEEECC--eEE--eecc-----CCCcceeEEee---ecEEEEccCCC
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGS----PLPSVFWTQEG--SQV--LMFP-----GNAYGHLHVTQ---EGTLRIQGVQK  103 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~----~~~~v~W~~~~--~~~--~~~~-----~~~~~~~~~~~---~~~l~i~~~~~  103 (292)
                      ...|..+.+.+|++++|.|.....    ....+.||+..  ...  ....     .....++....   ...|+|.++++
T Consensus         5 tQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~   84 (111)
T d2gsia1           5 TQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEE   84 (111)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             EeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccc
Confidence            345667788999999999987532    22348899842  111  1110     11112222222   23799999999


Q ss_pred             CCCeEEEEEEE
Q psy15128        104 EDAGFFVCSAL  114 (292)
Q Consensus       104 ~d~g~Y~C~~~  114 (292)
                      +|+|.|.|.+.
T Consensus        85 ~DsA~YyCa~~   95 (111)
T d2gsia1          85 EDAATYYCSHI   95 (111)
T ss_dssp             GGCEEEEEEEC
T ss_pred             cCCceEEEEEC
Confidence            99999999754

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=9e-07  Score=54.78  Aligned_cols=72  Identities=19%  Similarity=0.213  Sum_probs=47.0

Q ss_pred             EecCCcEEEEEEEeee-C-CCeeEEEECCeEEeecc-----CCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         48 VGLNGIASFQCVAEGS-P-LPSVFWTQEGSQVLMFP-----GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        48 ~~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      ...++.++|.|.+.++ | ...+.|.++|..+....     ........+...+.|.|..........|+|.+.+....
T Consensus        16 ~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~   94 (105)
T d1fp5a2          16 PGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS   94 (105)
T ss_dssp             SSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTST
T ss_pred             HhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCCC
Confidence            3456789999999985 4 34899999988653211     00111122334457888777667777899999986543

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.28  E-value=1.9e-06  Score=54.41  Aligned_cols=77  Identities=19%  Similarity=0.272  Sum_probs=48.5

Q ss_pred             EeCCCccEEecCCcEEEEEEEeee-CCCeeEEEECC--e-EEe-e--ccCC----CcceeEEee-----ecEEEEccCCC
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGS-PLPSVFWTQEG--S-QVL-M--FPGN----AYGHLHVTQ-----EGTLRIQGVQK  103 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~-~~~~v~W~~~~--~-~~~-~--~~~~----~~~~~~~~~-----~~~l~i~~~~~  103 (292)
                      ...+..+.+.+|++++|.|..... ....+.|||..  . ... .  ....    ...+.....     ...|.|.+++.
T Consensus         3 tQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1fo0a_           3 TQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI   82 (115)
T ss_dssp             ECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred             EccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCc
Confidence            344567789999999999987543 34468899832  1 111 1  1111    111222221     13699999999


Q ss_pred             CCCeEEEEEEEeC
Q psy15128        104 EDAGFFVCSALSV  116 (292)
Q Consensus       104 ~d~g~Y~C~~~~~  116 (292)
                      +|+|.|.|.+...
T Consensus        83 ~Dsa~YyCa~~~~   95 (115)
T d1fo0a_          83 EDSAVYFCAMRGD   95 (115)
T ss_dssp             GGCEEEEEEEECC
T ss_pred             cccccccceeecC
Confidence            9999999987643

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.28  E-value=2.6e-06  Score=53.23  Aligned_cols=73  Identities=18%  Similarity=0.318  Sum_probs=45.7

Q ss_pred             CCccEEecCCcEEEEEEEeee-CCCeeEEEEC--Ce--E-EeeccC----CCcceeEEe---eecEEEEccCCCCCCeEE
Q psy15128         43 PQDQKVGLNGIASFQCVAEGS-PLPSVFWTQE--GS--Q-VLMFPG----NAYGHLHVT---QEGTLRIQGVQKEDAGFF  109 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~-~~~~v~W~~~--~~--~-~~~~~~----~~~~~~~~~---~~~~l~i~~~~~~d~g~Y  109 (292)
                      |..+.+.+|++++|.|..... ....+.|||.  +.  . +.....    ....+....   ....|.|.+++.+|+|.|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY   84 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence            445778899999999987543 3446889983  21  1 111000    001111111   123699999999999999


Q ss_pred             EEEEEe
Q psy15128        110 VCSALS  115 (292)
Q Consensus       110 ~C~~~~  115 (292)
                      .|.+..
T Consensus        85 yCa~~~   90 (110)
T d2esvd1          85 YCIVVR   90 (110)
T ss_dssp             EEEEEE
T ss_pred             EEEEeC
Confidence            998764

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.28  E-value=9.3e-07  Score=54.97  Aligned_cols=72  Identities=18%  Similarity=0.284  Sum_probs=46.0

Q ss_pred             CccEEecCCcEEEEEEEeeeCCCeeEEEECC--e--EEeecc-----CCCcceeEEee---ecEEEEccCCCCCCeEEEE
Q psy15128         44 QDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--S--QVLMFP-----GNAYGHLHVTQ---EGTLRIQGVQKEDAGFFVC  111 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~--~~~~~~-----~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y~C  111 (292)
                      ..+.+.+|++++|.|.........+.|||..  .  ......     .....+.....   ...|.|.+++.+|+|.|.|
T Consensus         8 ~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyC   87 (109)
T d1w72l1           8 PSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYC   87 (109)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEE
Confidence            3467788999999998765444579999742  1  111111     01112222221   2379999999999999999


Q ss_pred             EEEe
Q psy15128        112 SALS  115 (292)
Q Consensus       112 ~~~~  115 (292)
                      .+..
T Consensus        88 A~~~   91 (109)
T d1w72l1          88 QVWD   91 (109)
T ss_dssp             EEEE
T ss_pred             EecC
Confidence            8764

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=2.4e-06  Score=52.01  Aligned_cols=79  Identities=16%  Similarity=0.265  Sum_probs=47.3

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      .|.+...|. ..+..|++|+|.|... .....+.++|++.....................+.|.+++..|+|.|+|....
T Consensus         4 kPsLsa~P~-~~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   81 (98)
T d1ugna2           4 KPTLSAQPS-PVVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYD   81 (98)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECS-SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEEC
T ss_pred             CCEEEeeCC-CccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEc
Confidence            456666664 4588999999999864 24457888887764321100000000111234689999999999999998764


Q ss_pred             C
Q psy15128        116 V  116 (292)
Q Consensus       116 ~  116 (292)
                      .
T Consensus        82 ~   82 (98)
T d1ugna2          82 S   82 (98)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.26  E-value=7.5e-06  Score=52.03  Aligned_cols=72  Identities=28%  Similarity=0.493  Sum_probs=46.7

Q ss_pred             CccEEecCCcEEEEEEEeeeC--CCeeEEEECC--e--E-Eee---------ccCCCcceeEEeee-----cEEEEccCC
Q psy15128         44 QDQKVGLNGIASFQCVAEGSP--LPSVFWTQEG--S--Q-VLM---------FPGNAYGHLHVTQE-----GTLRIQGVQ  102 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~--~-~~~---------~~~~~~~~~~~~~~-----~~l~i~~~~  102 (292)
                      ..+...+|++++|.|.+.|..  ...+.|||..  +  . +..         ..+....++....+     ..|.|.++.
T Consensus         9 ~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~   88 (123)
T d1hxmb1           9 ISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVE   88 (123)
T ss_dssp             SEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCC
T ss_pred             CeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccc
Confidence            345677899999999998743  4468999831  1  1 110         11112233433321     269999999


Q ss_pred             CCCCeEEEEEEEe
Q psy15128        103 KEDAGFFVCSALS  115 (292)
Q Consensus       103 ~~d~g~Y~C~~~~  115 (292)
                      ++|+|.|.|....
T Consensus        89 ~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          89 KQDIATYYCALWE  101 (123)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccCcEEEEeeeC
Confidence            9999999998653

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.26  E-value=1.6e-06  Score=53.88  Aligned_cols=73  Identities=16%  Similarity=0.156  Sum_probs=46.8

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--CeEe---c-------cCCCceEEecCCCcccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQFI---D-------LESSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~~---~-------~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                      |..+.+.+|++++|.|.. .......+.|++.  |+.+   .       .....++....+     .....|.|..+..+
T Consensus         8 p~~l~v~~G~~vtL~C~~-~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~-----~~~~~L~I~~~~~~   81 (107)
T d1j1pl_           8 PATLSVTPGNSVSLSCRA-SQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGS-----GTDFTLSINSVETE   81 (107)
T ss_dssp             CSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-----TTEEEEEESSCCGG
T ss_pred             CCeEEECCCCCEEEEEEe-cCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceeccc-----CCEEEEEEcccCcC
Confidence            456789999999999996 4444557999982  2211   0       001111211111     22347999999999


Q ss_pred             ccceeEEEEee
Q psy15128        273 SDDQWKLIAKN  283 (292)
Q Consensus       273 ~~g~y~C~a~n  283 (292)
                      |+|.|.|.+.+
T Consensus        82 Dsa~YyCa~~~   92 (107)
T d1j1pl_          82 DFGMYFCQQAN   92 (107)
T ss_dssp             GCEEEEEEECS
T ss_pred             CCEEEEEEcCC
Confidence            99999997654

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.26  E-value=1.9e-06  Score=54.30  Aligned_cols=74  Identities=15%  Similarity=0.280  Sum_probs=46.5

Q ss_pred             eCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--e--EEee-ccC-C------CcceeEE----eeecEEEEccCCCC
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--S--QVLM-FPG-N------AYGHLHV----TQEGTLRIQGVQKE  104 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~--~~~~-~~~-~------~~~~~~~----~~~~~l~i~~~~~~  104 (292)
                      ..|....+.+|++++|.|... .....+.|||..  +  .+.. ... .      .......    .....|.|.++..+
T Consensus         4 QsP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (114)
T d1ogae1           4 QSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKN   82 (114)
T ss_dssp             CSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSC
T ss_pred             EcCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcC
Confidence            345567788999999999875 344579999842  1  1111 000 0      0111111    11236999999999


Q ss_pred             CCeEEEEEEEe
Q psy15128        105 DAGFFVCSALS  115 (292)
Q Consensus       105 d~g~Y~C~~~~  115 (292)
                      |+|.|.|....
T Consensus        83 DSa~YyCa~~~   93 (114)
T d1ogae1          83 PTAFYLCASSS   93 (114)
T ss_dssp             CCEEEEEEEES
T ss_pred             CceeEEEeecc
Confidence            99999997654

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.26  E-value=1.7e-06  Score=53.78  Aligned_cols=73  Identities=21%  Similarity=0.279  Sum_probs=46.6

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--Ce---Eecc-------CCCceEEecCCCcccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQ---FIDL-------ESSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~---~~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                      |....+.+|++|+|.|.. .......+.|++.  |+   .+..       ....+.....     ......|.|..+..+
T Consensus         8 P~~l~v~~G~svtl~C~~-s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~l~~~   81 (107)
T d1kcvl1           8 PKSMGMSVGEAVTLNCKA-SENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSG-----SATDFTLTISSVQAD   81 (107)
T ss_dssp             CSEEEEETTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGG
T ss_pred             CCEEeECCCCCEEEEEEe-cCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeec-----cCCeeecEEHhheec
Confidence            456788999999999996 4444457999972  21   1110       0111111111     122346999999999


Q ss_pred             ccceeEEEEee
Q psy15128        273 SDDQWKLIAKN  283 (292)
Q Consensus       273 ~~g~y~C~a~n  283 (292)
                      |+|.|.|.+..
T Consensus        82 DSa~YyCa~~~   92 (107)
T d1kcvl1          82 DDADYYCGQSY   92 (107)
T ss_dssp             GCEEEEEEECS
T ss_pred             CCceEEEEecC
Confidence            99999998753

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.26  E-value=2.4e-06  Score=53.02  Aligned_cols=73  Identities=19%  Similarity=0.236  Sum_probs=45.8

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--Ce---Eecc-------CCCceEEecCCCcccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQ---FIDL-------ESSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~---~~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                      |..+.+.+|++++|.|.. .......+.|++-  |+   .+..       ....+......     .....|.|..+.++
T Consensus         8 P~~l~~~~G~svtL~C~~-s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~l~~~   81 (108)
T d1jhll_           8 PSYLVASPGETITINCRA-SKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGS-----GTDFTLTISSLEPE   81 (108)
T ss_dssp             CSEEEECTTSCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEES-----SSEEEEEECSCCTT
T ss_pred             CCeEEecCCCCEEEEEEc-cCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCC-----CCEEEeEeeeeEec
Confidence            456778999999999997 4444557999882  21   1110       00111111101     12246999999999


Q ss_pred             ccceeEEEEee
Q psy15128        273 SDDQWKLIAKN  283 (292)
Q Consensus       273 ~~g~y~C~a~n  283 (292)
                      |+|.|.|.+.+
T Consensus        82 Dsa~YyCA~~~   92 (108)
T d1jhll_          82 DFAMYICQQHN   92 (108)
T ss_dssp             CCSEEEEEECS
T ss_pred             cceEEEEeeCC
Confidence            99999997654

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.26  E-value=2.1e-06  Score=53.78  Aligned_cols=73  Identities=22%  Similarity=0.350  Sum_probs=45.6

Q ss_pred             eCCCccEEecCCcEEEEEEEeee-----CCCeeEEEECC--e--EEeecc-----CCCcceeEEee---ecEEEEccCCC
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGS-----PLPSVFWTQEG--S--QVLMFP-----GNAYGHLHVTQ---EGTLRIQGVQK  103 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~-----~~~~v~W~~~~--~--~~~~~~-----~~~~~~~~~~~---~~~l~i~~~~~  103 (292)
                      ..|..+.+.+|++++|.|...+.     ....+.||+..  .  ......     .....+.....   ...|.|.+++.
T Consensus         6 Q~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~   85 (112)
T d1mjul1           6 QAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEA   85 (112)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCG
T ss_pred             ecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccc
Confidence            34556678899999999987652     23468999742  1  111111     11112222222   23699999999


Q ss_pred             CCCeEEEEEE
Q psy15128        104 EDAGFFVCSA  113 (292)
Q Consensus       104 ~d~g~Y~C~~  113 (292)
                      +|+|.|.|..
T Consensus        86 ~DsAvYyCa~   95 (112)
T d1mjul1          86 EDVGVYYCLQ   95 (112)
T ss_dssp             GGCEEEEEEE
T ss_pred             cCCceEEEEe
Confidence            9999999954

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=6.7e-06  Score=49.42  Aligned_cols=66  Identities=11%  Similarity=0.119  Sum_probs=40.6

Q ss_pred             cCCcEEEEEEEeee-CC-CeeEEEECCeEEeeccCCCcceeE------EeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         50 LNGIASFQCVAEGS-PL-PSVFWTQEGSQVLMFPGNAYGHLH------VTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        50 ~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      .++.++|.|.+.|+ |. ..+.|.++|..+..... ......      +.....|.+   ...+.+.|+|.+.+....
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~-~~~~~~~~~~~t~~~~s~l~v---~~~~~~~ytC~V~H~sl~   87 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEF-EPKDVLPNGDGTYQGWITLAV---PPGEEQRYTCQVEHPGLD   87 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGS-CCCEEEECTTSCEEEEEEEEE---CTTCGGGEEEEEECTTSS
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcc-cccceEeCCCceEEEEEEEEE---CCCCCCEEEEEEEeCCCC
Confidence            46678999999996 43 38999999987642211 111111      111223444   445567899999987543

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.25  E-value=2.5e-06  Score=53.49  Aligned_cols=75  Identities=20%  Similarity=0.343  Sum_probs=46.2

Q ss_pred             EeCCCccEEecCCcEEEEEEEeee---C---CCeeEEEECC--e--EEeec-----cCCCcceeEEee---ecEEEEccC
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGS---P---LPSVFWTQEG--S--QVLMF-----PGNAYGHLHVTQ---EGTLRIQGV  101 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~---~---~~~v~W~~~~--~--~~~~~-----~~~~~~~~~~~~---~~~l~i~~~  101 (292)
                      ...|..+.+.+|++++|.|.+.+.   .   ...+.|||..  .  .+...     ......+.....   ...|.|.++
T Consensus         5 tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l   84 (113)
T d1q9ra1           5 SQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSV   84 (113)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC
T ss_pred             EccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEeccc
Confidence            344667778899999999987532   1   1248899842  1  11110     011111222221   237999999


Q ss_pred             CCCCCeEEEEEEE
Q psy15128        102 QKEDAGFFVCSAL  114 (292)
Q Consensus       102 ~~~d~g~Y~C~~~  114 (292)
                      +++|+|.|.|...
T Consensus        85 ~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          85 QAEDLAVYYCKQS   97 (113)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             ccCCCeEEEeccc
Confidence            9999999999754

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.25  E-value=1.5e-06  Score=54.81  Aligned_cols=77  Identities=14%  Similarity=0.105  Sum_probs=46.7

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeE--cCe---Eec-c-CCCceEEecCCCccc---cccccccccccccccccc
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKK--NGQ---FID-L-ESSKRVSILGDPWFD---SRRSRSIFGSVLGALSDD  275 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~--~g~---~~~-~-~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~~~g  275 (292)
                      ..+.+.+|++++|.|.. .......+.|++  .|+   .+. . ...............   ......|.|..+..+|+|
T Consensus         8 ~~v~v~~G~svtl~C~~-~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg   86 (115)
T d1i9ea_           8 ARVTVSEGASLQLRCKY-SYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSA   86 (115)
T ss_dssp             SEEEEETTSCEEECCEE-ECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCE
T ss_pred             CeEEECCCCCEEEEEEE-cCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccc
Confidence            46789999999999986 444456788987  222   121 1 111111111111111   122346899999999999


Q ss_pred             eeEEEEee
Q psy15128        276 QWKLIAKN  283 (292)
Q Consensus       276 ~y~C~a~n  283 (292)
                      .|.|.+..
T Consensus        87 ~YyCa~~~   94 (115)
T d1i9ea_          87 VYFCAVSG   94 (115)
T ss_dssp             EEEEEEEE
T ss_pred             eecccccC
Confidence            99998763

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=8.4e-07  Score=53.50  Aligned_cols=69  Identities=17%  Similarity=0.289  Sum_probs=42.8

Q ss_pred             CCCceEEEeeCCCCCCCC-eEEEeEcCeEeccC--CCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        212 SGETALLECGPPKGQPEP-TLHWKKNGQFIDLE--SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      .++.++|.|.|.+.+|.. .++|++||+.+...  ........+++.+...  ..|   .+...+...|+|.+++..
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~--s~l---~v~~~~~~~ytC~V~H~s   85 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGW--ITL---AVPPGEEQRYTCQVEHPG   85 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEE--EEE---EECTTCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEE--EEE---EECCCCCCEEEEEEEeCC
Confidence            456789999995446644 99999999998532  2223333344333322  222   233445568999999864

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.25  E-value=6.7e-06  Score=50.96  Aligned_cols=73  Identities=21%  Similarity=0.410  Sum_probs=46.9

Q ss_pred             CCccEEecCCcEEEEEEEeeeCCCeeEEEEC--Ce--EEeecc-----CCCcceeEEee---ecEEEEccCCCCCCeEEE
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSPLPSVFWTQE--GS--QVLMFP-----GNAYGHLHVTQ---EGTLRIQGVQKEDAGFFV  110 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~--~~--~~~~~~-----~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y~  110 (292)
                      |....+.+|++++|.|.........+.|||.  +.  ......     .....++....   ...|.|.+++++|+|.|.
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Yy   85 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEE
Confidence            4456778899999999875444456899983  22  111111     11112222222   237999999999999999


Q ss_pred             EEEEe
Q psy15128        111 CSALS  115 (292)
Q Consensus       111 C~~~~  115 (292)
                      |.+..
T Consensus        86 CA~~~   90 (108)
T d1nfde1          86 CLSSY   90 (108)
T ss_dssp             EEEEE
T ss_pred             EEeec
Confidence            98754

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2e-06  Score=51.69  Aligned_cols=72  Identities=15%  Similarity=0.234  Sum_probs=50.2

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      .+|.+...|. ..+..|++|+|.|... .+...+.|+|+|.......      ........+.|.+++..|+|.|+|...
T Consensus         3 pkPsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~~~------~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2           3 DTPTLSVHPG-PEVISGEKVTFYCRLD-TATSMFLLLKEGRSSHVQR------GYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             CCCEEEEESC-SEEETTCEEEEEEECS-SSCSEEEEEEESSSCEEEE------EECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CCCEEEEeCC-CcccCCCcEEEEECCC-CCCCEEEEEECCCccceee------cCCCceeEEEecccChhcCceEEEEeE
Confidence            3566666664 4588899999999874 3455788999775332111      111224579999999999999999754

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.24  E-value=1.6e-06  Score=53.83  Aligned_cols=72  Identities=17%  Similarity=0.255  Sum_probs=46.0

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--C---eEecc-------CCCceEEecCCCcccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--G---QFIDL-------ESSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g---~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                      |+...+.+|++++|.|.. .......+.|++-  |   +.+..       ....++.....     .....|.|..+.++
T Consensus         7 p~s~~~~~G~svtL~C~~-s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~-----~~~~~L~I~~~~~~   80 (106)
T d1lk3l1           7 PPALTVSPGEKLTISCKA-SESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGS-----GTDFTLTIDPVEAD   80 (106)
T ss_dssp             CSEEEECTTSCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEESSCCGG
T ss_pred             CCeEEECCCCCEEEEEEe-CCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecC-----CCEEEeEECCcChh
Confidence            346788999999999997 4444557999972  2   11210       01111111111     22247999999999


Q ss_pred             ccceeEEEEe
Q psy15128        273 SDDQWKLIAK  282 (292)
Q Consensus       273 ~~g~y~C~a~  282 (292)
                      |+|.|.|.+.
T Consensus        81 Dsa~YyCa~~   90 (106)
T d1lk3l1          81 DTAIYFCQQS   90 (106)
T ss_dssp             GCEEEEEEEC
T ss_pred             hCCCcccccc
Confidence            9999999754

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.24  E-value=1.6e-06  Score=52.50  Aligned_cols=65  Identities=22%  Similarity=0.416  Sum_probs=41.6

Q ss_pred             CCcEEEEEEEeeeCCCeeEEEECC--e--E-EeeccC---CCcceeEEe-----eecEEEEccCCCCCCeEEEEEEEe
Q psy15128         51 NGIASFQCVAEGSPLPSVFWTQEG--S--Q-VLMFPG---NAYGHLHVT-----QEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        51 g~~~~l~C~~~~~~~~~v~W~~~~--~--~-~~~~~~---~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      |++++|.|.........+.|||..  .  . +.....   ....+....     ....|.|.+++++|+|.|.|.+..
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEec
Confidence            789999999877666689999832  1  1 111010   011112111     123699999999999999998764

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.23  E-value=2.2e-06  Score=53.04  Aligned_cols=73  Identities=19%  Similarity=0.202  Sum_probs=46.4

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--C---eEecc-------CCCceEEecCCCcccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--G---QFIDL-------ESSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g---~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                      |....+.+|++++|.|.. .......+.|++.  |   +.|..       ....++....     ......|.|..+.++
T Consensus         7 P~sl~~~~G~svtL~C~~-~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~-----~~~~~~L~I~~~~~~   80 (106)
T d1op3k1           7 PSTLSASVGDTITITCRA-SQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSG-----SGTEFTLTISGLQFD   80 (106)
T ss_dssp             CSEEEECTTCEEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEEESCCGG
T ss_pred             CCeEEECCCCCEEEEEEe-CCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeec-----cCCEEEEEEcccccc
Confidence            456788999999999987 4444557899983  2   12210       1111111111     122236899999999


Q ss_pred             ccceeEEEEee
Q psy15128        273 SDDQWKLIAKN  283 (292)
Q Consensus       273 ~~g~y~C~a~n  283 (292)
                      |+|.|.|.+..
T Consensus        81 Dsa~YyCa~~~   91 (106)
T d1op3k1          81 DFATYHCQHYA   91 (106)
T ss_dssp             GCSEEEEEEEC
T ss_pred             CCCcEeeeeCC
Confidence            99999998653

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=5.5e-06  Score=51.79  Aligned_cols=72  Identities=21%  Similarity=0.356  Sum_probs=43.0

Q ss_pred             cEEecCCcEEEEEEEeeeC---CCeeE--EEECCeEE-eec-c---------CCCcceeEE-eeecEEEEccCCCCCCeE
Q psy15128         46 QKVGLNGIASFQCVAEGSP---LPSVF--WTQEGSQV-LMF-P---------GNAYGHLHV-TQEGTLRIQGVQKEDAGF  108 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~---~~~v~--W~~~~~~~-~~~-~---------~~~~~~~~~-~~~~~l~i~~~~~~d~g~  108 (292)
                      +.+..|++++|.|.+...+   ...+.  |.++.... ... .         ..-..+... ..+..|+|.+++.+|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            4577899999999885422   12233  44433221 110 1         011122222 234589999999999999


Q ss_pred             EEEEEEeCC
Q psy15128        109 FVCSALSVA  117 (292)
Q Consensus       109 Y~C~~~~~~  117 (292)
                      |.|.+....
T Consensus        84 Y~C~V~~~~   92 (110)
T d1ncna_          84 YQCIIHHKK   92 (110)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecC
Confidence            999997543

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.23  E-value=5.7e-07  Score=54.91  Aligned_cols=70  Identities=14%  Similarity=0.133  Sum_probs=43.9

Q ss_pred             eCCCceEEEeeCCCCCCC-CeEEEeEcCeEeccCCC-ceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        211 ASGETALLECGPPKGQPE-PTLHWKKNGQFIDLESS-KRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       211 ~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      ..|+.++|.|.|.+.+|. ..+.|++||+++..... .......++.|....  .|   .+...+.+.|+|.++...
T Consensus        15 ~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s--~l---~v~~~~~~~ytC~V~H~s   86 (100)
T d1muja1          15 LLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLS--YL---TFIPSDDDIYDCKVEHWG   86 (100)
T ss_dssp             CTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEE--EE---EECCCTTCCEEEEEECTT
T ss_pred             ccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEE--Ee---EEcCCCCCEEEEEEEECC
Confidence            457888999999554554 59999999988853211 112334444444321  22   233456679999999764

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2e-06  Score=54.93  Aligned_cols=74  Identities=15%  Similarity=0.191  Sum_probs=46.0

Q ss_pred             CCccEEecCCcEEEEEEEeeeC-------CCeeEEEECCeEEe-----ecc-------CCCcceeEEee-----ecEEEE
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSP-------LPSVFWTQEGSQVL-----MFP-------GNAYGHLHVTQ-----EGTLRI   98 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~-------~~~v~W~~~~~~~~-----~~~-------~~~~~~~~~~~-----~~~l~i   98 (292)
                      +..+.+.+|++++|.|.+....       ...+.|++....-.     ...       ....++..+..     +..|+|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            4467788999999999885211       12477988532111     000       01112333322     337999


Q ss_pred             ccCCCCCCeEEEEEEEeC
Q psy15128         99 QGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        99 ~~~~~~d~g~Y~C~~~~~  116 (292)
                      .+++.+|+|.|.|.+...
T Consensus        88 ~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             CCCChHHCEEEEEEEEeC
Confidence            999999999999999753

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.23  E-value=2e-06  Score=54.21  Aligned_cols=76  Identities=12%  Similarity=0.073  Sum_probs=47.6

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--Ce---Eecc-------CCCceEEecCCCcccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQ---FIDL-------ESSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~---~~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                      +..+.+.+|+.++|.|.. .......+.|++.  |+   .|..       ....++....+   .......|.|..++.+
T Consensus         8 ~~~v~v~~G~~vtL~C~~-~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~~~~~   83 (115)
T d1lp9e1           8 EGLVTLTEGLPVMLNCTY-QSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLH---KSSSSFHLQKSSAQLS   83 (115)
T ss_dssp             CSEEEEETTSCEEECEEE-ECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCB---GGGTBCCEEESSCCGG
T ss_pred             CCeEEECCCCCEEEEEEE-eCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeecc---CCCCeEEeeccccccc
Confidence            346788999999999997 4555568999983  21   1100       00111111111   0122345889999999


Q ss_pred             ccceeEEEEeec
Q psy15128        273 SDDQWKLIAKNI  284 (292)
Q Consensus       273 ~~g~y~C~a~n~  284 (292)
                      |+|.|.|.+...
T Consensus        84 Dsg~YyCa~~~~   95 (115)
T d1lp9e1          84 DSALYYCALFLA   95 (115)
T ss_dssp             GCEEEEEEEEEC
T ss_pred             cCccceEEEEcC
Confidence            999999987654

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.23  E-value=3e-06  Score=52.20  Aligned_cols=73  Identities=21%  Similarity=0.296  Sum_probs=45.9

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--CeE---eccC-------CCceEEecCCCcccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQF---IDLE-------SSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~---~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                      |+.+.+.+|++|+|.|.. .......+.|++-  |+.   +...       ...+.....     ......|.|..+..+
T Consensus         5 p~sl~~~~G~svtl~C~~-~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~l~~~   78 (103)
T d8faba1           5 PPSVSVSPGQTARITCSA-NALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSST-----SGTTVTLTISGVQAE   78 (103)
T ss_dssp             CSEEEECTTSCEEEEEEC-TTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-----ETTEEEEEETTCCGG
T ss_pred             CCeEEECCCCCEEEEEEe-CCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECC-----CCCccCceEcCcchh
Confidence            356788999999999997 4444457899982  211   1000       000111100     122246889999999


Q ss_pred             ccceeEEEEee
Q psy15128        273 SDDQWKLIAKN  283 (292)
Q Consensus       273 ~~g~y~C~a~n  283 (292)
                      |+|.|.|.+.+
T Consensus        79 Dsa~YyCA~~~   89 (103)
T d8faba1          79 DEADYYCQAWD   89 (103)
T ss_dssp             GCEEEEEEEEE
T ss_pred             HCceEEeeecC
Confidence            99999998764

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.5e-06  Score=52.42  Aligned_cols=69  Identities=14%  Similarity=0.168  Sum_probs=45.0

Q ss_pred             cCCcEEEEEEEeee-CC-CeeEEEECCeEEeecc----CCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128         50 LNGIASFQCVAEGS-PL-PSVFWTQEGSQVLMFP----GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG  118 (292)
Q Consensus        50 ~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~  118 (292)
                      .++.++|.|.+.++ |. ..|.|.++|..+....    ........+...+.|.|..........|+|.+.+...
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGH   93 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCc
Confidence            45678999999986 33 3799999987653110    0011112233445678877776777889999988643

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.22  E-value=2.1e-06  Score=54.15  Aligned_cols=79  Identities=15%  Similarity=0.171  Sum_probs=48.2

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--Ce---Eec-cCCCceEEecCCCc-cc---ccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQ---FID-LESSKRVSILGDPW-FD---SRRSRSIFGSVLGALSD  274 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~---~~~-~~~~~~~~~~~~~~-~~---~~~~~~l~i~~~~~~~~  274 (292)
                      +..+.+.+|+.|+|.|.. .......+.|++-  |+   .|. .............. ..   ......|.|..+..+|+
T Consensus         7 p~~v~~~~G~~vtl~C~~-s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   85 (115)
T d1j8hd1           7 GSHVSVSEGALVLLRCNY-SSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDA   85 (115)
T ss_dssp             CSEEEEETTSCEEECCEE-ECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGC
T ss_pred             CCeEEEcCCCCEEEEEEe-CCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCC
Confidence            356788999999999996 4444567999982  22   121 11111111111111 10   12233689999999999


Q ss_pred             ceeEEEEeec
Q psy15128        275 DQWKLIAKNI  284 (292)
Q Consensus       275 g~y~C~a~n~  284 (292)
                      |.|.|.+...
T Consensus        86 a~YyCa~~~~   95 (115)
T d1j8hd1          86 AEYFCAVSES   95 (115)
T ss_dssp             EEEEEEEESS
T ss_pred             ccceeeecCC
Confidence            9999999754

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.22  E-value=2.6e-06  Score=53.27  Aligned_cols=74  Identities=20%  Similarity=0.348  Sum_probs=46.2

Q ss_pred             EeCCCccEEecCCcEEEEEEEeee-----CCCeeEEEECC--e--EEeec-----cCCCcceeEEe---eecEEEEccCC
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGS-----PLPSVFWTQEG--S--QVLMF-----PGNAYGHLHVT---QEGTLRIQGVQ  102 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~-----~~~~v~W~~~~--~--~~~~~-----~~~~~~~~~~~---~~~~l~i~~~~  102 (292)
                      +..|..+.+.+|++++|.|...+.     ....+.||+..  .  .....     ......++...   .+..|.|.+++
T Consensus         5 TQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~   84 (112)
T d1ncwl1           5 TQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVE   84 (112)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccc
Confidence            345667788999999999986532     22358899842  1  11110     01111222221   22379999999


Q ss_pred             CCCCeEEEEEE
Q psy15128        103 KEDAGFFVCSA  113 (292)
Q Consensus       103 ~~d~g~Y~C~~  113 (292)
                      ++|+|.|.|..
T Consensus        85 ~eDsAvYYC~~   95 (112)
T d1ncwl1          85 AEDLGVYYCWQ   95 (112)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cCcCEeEEEEc
Confidence            99999999964

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.22  E-value=5.9e-06  Score=51.65  Aligned_cols=73  Identities=18%  Similarity=0.401  Sum_probs=46.3

Q ss_pred             eCCCccEEecCCcEEEEEEEeeeCCCeeEEEEC--Ce--E-Ee--------eccCCCcceeEEee----ecEEEEccCCC
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE--GS--Q-VL--------MFPGNAYGHLHVTQ----EGTLRIQGVQK  103 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~--~~--~-~~--------~~~~~~~~~~~~~~----~~~l~i~~~~~  103 (292)
                      ..|....+.+|++++|.|.... ....+.|||.  +.  . +.        ........+.....    ...|+|.++..
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~   82 (111)
T d2esve1           4 QFPSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAEL   82 (111)
T ss_dssp             EECSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCG
T ss_pred             ECCCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCccc
Confidence            3455677889999999997543 3457899973  21  1 11        01111122222221    23799999999


Q ss_pred             CCCeEEEEEEE
Q psy15128        104 EDAGFFVCSAL  114 (292)
Q Consensus       104 ~d~g~Y~C~~~  114 (292)
                      +|+|.|.|.+.
T Consensus        83 ~Dsa~YyCa~~   93 (111)
T d2esve1          83 EDSGVYFCASS   93 (111)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCCceEEEeee
Confidence            99999999865

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.22  E-value=1.8e-06  Score=53.74  Aligned_cols=74  Identities=22%  Similarity=0.260  Sum_probs=45.9

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--Ce---Eecc-------CCCceEEecCCCcccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQ---FIDL-------ESSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~---~~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                      |....+.+|++++|.|..........+.|++.  |+   .|-.       ....++....     ......|.|..+..+
T Consensus         8 P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~-----~~~~~~L~I~~~~~~   82 (108)
T d2fx7l1           8 PGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSG-----SGTDFTLTISRLEPE   82 (108)
T ss_dssp             SSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-----ETTEEEEEESSCCGG
T ss_pred             CCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeec-----CCCEEEEEehHheec
Confidence            45677899999999998633333457889983  22   1210       0111111110     122346899999999


Q ss_pred             ccceeEEEEee
Q psy15128        273 SDDQWKLIAKN  283 (292)
Q Consensus       273 ~~g~y~C~a~n  283 (292)
                      |+|.|.|.+.+
T Consensus        83 Dsa~YyCa~~~   93 (108)
T d2fx7l1          83 DFAVYYCQQYG   93 (108)
T ss_dssp             GCSEEEEEECS
T ss_pred             ccEEEeeecCC
Confidence            99999998753

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=3.5e-07  Score=56.63  Aligned_cols=75  Identities=17%  Similarity=0.176  Sum_probs=46.6

Q ss_pred             CCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccc
Q psy15128        213 GETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  289 (292)
                      +..++|.|.|.+.+|.. .|+|.++|+.+............++.|..  ...|.+..-.......|+|.|++......
T Consensus        21 ~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~--~S~L~v~~~~w~~~~~ytC~V~H~~~t~~   96 (104)
T d1o0va1          21 PPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELAST--QSELTLSQKHWLSDRTYTCQVTYQGHTFE   96 (104)
T ss_dssp             CSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEE--EEEEEEEHHHHHTTCCEEEEEEETTEEEE
T ss_pred             CCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEE--EEEEEECHHHcCCCCEEEEEEEECCEeEE
Confidence            45688999995546655 79999999988533332333333443332  22444544333445689999999865544

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.22  E-value=2.8e-06  Score=53.27  Aligned_cols=73  Identities=21%  Similarity=0.365  Sum_probs=46.3

Q ss_pred             CCccEEecCCcEEEEEEEeee---CCCeeEEEECC--e--EEeecc-----CCCcceeEE---eeecEEEEccCCCCCCe
Q psy15128         43 PQDQKVGLNGIASFQCVAEGS---PLPSVFWTQEG--S--QVLMFP-----GNAYGHLHV---TQEGTLRIQGVQKEDAG  107 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~---~~~~v~W~~~~--~--~~~~~~-----~~~~~~~~~---~~~~~l~i~~~~~~d~g  107 (292)
                      |..+.+.+|++++|.|...+.   ....+.|||..  .  ......     .....+...   .....|.|.+++++|+|
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   86 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA   86 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence            456778899999999987653   22358899832  1  111110     011111111   12347999999999999


Q ss_pred             EEEEEEEe
Q psy15128        108 FFVCSALS  115 (292)
Q Consensus       108 ~Y~C~~~~  115 (292)
                      .|.|.+..
T Consensus        87 ~YyCa~~~   94 (112)
T d1lgva1          87 DYYCSSYD   94 (112)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEeeec
Confidence            99998764

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.22  E-value=3.1e-06  Score=53.29  Aligned_cols=78  Identities=15%  Similarity=0.216  Sum_probs=47.1

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--CeE---e-ccCCCceEEecCCCc---cccccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQF---I-DLESSKRVSILGDPW---FDSRRSRSIFGSVLGALSDD  275 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~---~-~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~~~g  275 (292)
                      |....+.+|++++|.|.. .+. ...+.|++-  |+.   + ...............   ........|.|..+..+|+|
T Consensus         7 P~~~~~~~G~svtl~C~~-s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   84 (115)
T d1ogad1           7 PQFLSIQEGENLTVYCNS-SSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTG   84 (115)
T ss_dssp             CSEEEEETTCCEEEEEEC-SSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCE
T ss_pred             CCeEEECCCCCEEEEEEE-CCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCcccee
Confidence            456788999999999997 432 347899982  221   1 111111111111100   11133457899999999999


Q ss_pred             eeEEEEeec
Q psy15128        276 QWKLIAKNI  284 (292)
Q Consensus       276 ~y~C~a~n~  284 (292)
                      .|.|.+...
T Consensus        85 ~YyCa~~~~   93 (115)
T d1ogad1          85 LYLCAGAGS   93 (115)
T ss_dssp             EEEEEEECT
T ss_pred             eEcccccCC
Confidence            999988644

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.22  E-value=2.9e-06  Score=53.20  Aligned_cols=75  Identities=16%  Similarity=0.189  Sum_probs=47.1

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--CeEec----------cCCCceEEecCCCcccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQFID----------LESSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                      |..+.+.+|++|+|.|..........+.|++-  |+.+.          .....+.....+     .....|.|..+..+
T Consensus         5 P~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~~~~~   79 (112)
T d1kgcd1           5 PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAED-----RKSSTLILHRATLR   79 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTT-----SSEEEEEESSCCGG
T ss_pred             CCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeeccc-----CCeeEEEEeecccc
Confidence            45678899999999998633333446899982  22111          011112222222     22346889999999


Q ss_pred             ccceeEEEEeec
Q psy15128        273 SDDQWKLIAKNI  284 (292)
Q Consensus       273 ~~g~y~C~a~n~  284 (292)
                      |+|.|.|.+.-.
T Consensus        80 Dsa~YyCa~~~~   91 (112)
T d1kgcd1          80 DAAVYYCILPLA   91 (112)
T ss_dssp             GCEEEEEECCCC
T ss_pred             cceeEeeeEecC
Confidence            999999987543

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.21  E-value=4.2e-06  Score=52.23  Aligned_cols=76  Identities=17%  Similarity=0.301  Sum_probs=48.3

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--e--EEee-ccCCC----cceeEEe-----eecEEEEccCCCCC
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--S--QVLM-FPGNA----YGHLHVT-----QEGTLRIQGVQKED  105 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~--~~~~-~~~~~----~~~~~~~-----~~~~l~i~~~~~~d  105 (292)
                      ...+..+.+.+|+.++|.|.........+.|||..  +  .+.. .....    ..++...     ....|.|.++.++|
T Consensus         4 tQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~D   83 (110)
T d1ac6a_           4 TQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESD   83 (110)
T ss_dssp             EECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGG
T ss_pred             EeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCC
Confidence            44566678899999999998766545579999832  1  1111 11100    0111111     12369999999999


Q ss_pred             CeEEEEEEEe
Q psy15128        106 AGFFVCSALS  115 (292)
Q Consensus       106 ~g~Y~C~~~~  115 (292)
                      +|.|.|.+..
T Consensus        84 sa~YyCA~~~   93 (110)
T d1ac6a_          84 SAVYYCALSG   93 (110)
T ss_dssp             CEEEEEEEEE
T ss_pred             CcccceeecC
Confidence            9999998754

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.21  E-value=2.1e-06  Score=53.66  Aligned_cols=74  Identities=24%  Similarity=0.394  Sum_probs=45.9

Q ss_pred             eCCCccEEecCCcEEEEEEEeee----CCCeeEEEEC--Ce--EEeeccC-----CCcceeEEe---eecEEEEccCCCC
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGS----PLPSVFWTQE--GS--QVLMFPG-----NAYGHLHVT---QEGTLRIQGVQKE  104 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~----~~~~v~W~~~--~~--~~~~~~~-----~~~~~~~~~---~~~~l~i~~~~~~  104 (292)
                      ..|..+.+.+|++++|.|.....    ....+.|||.  +.  .......     ....+....   ....|.|.+++.+
T Consensus         6 QsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   85 (111)
T d1j05a_           6 QSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEAD   85 (111)
T ss_dssp             EECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGG
T ss_pred             ccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccc
Confidence            34556677889999999987432    2335999984  21  1111110     111122222   2237999999999


Q ss_pred             CCeEEEEEEE
Q psy15128        105 DAGFFVCSAL  114 (292)
Q Consensus       105 d~g~Y~C~~~  114 (292)
                      |+|.|.|.+.
T Consensus        86 Dsa~YyCa~~   95 (111)
T d1j05a_          86 DVATYYCQQT   95 (111)
T ss_dssp             GCEEEEEEEC
T ss_pred             cCccEEEeec
Confidence            9999999764

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.20  E-value=3e-06  Score=53.12  Aligned_cols=75  Identities=23%  Similarity=0.330  Sum_probs=47.1

Q ss_pred             EeCCCccEEecCCcEEEEEEEeee-----CCCeeEEEECC--e--EEeec-----cCCCcceeEEe---eecEEEEccCC
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGS-----PLPSVFWTQEG--S--QVLMF-----PGNAYGHLHVT---QEGTLRIQGVQ  102 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~-----~~~~v~W~~~~--~--~~~~~-----~~~~~~~~~~~---~~~~l~i~~~~  102 (292)
                      ...|....+.+|++++|.|...+.     ....+.||+..  .  .....     ......++...   ....|+|.++.
T Consensus         6 tQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~   85 (113)
T d1n4xl_           6 TQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVE   85 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCC
T ss_pred             eCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCC
Confidence            344666778899999999987542     22468999842  1  11110     11111222222   22379999999


Q ss_pred             CCCCeEEEEEEE
Q psy15128        103 KEDAGFFVCSAL  114 (292)
Q Consensus       103 ~~d~g~Y~C~~~  114 (292)
                      .+|+|.|.|...
T Consensus        86 ~~DsavYyCa~~   97 (113)
T d1n4xl_          86 AEDLGIYYCFQG   97 (113)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cccCEEEEEEEC
Confidence            999999999643

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.20  E-value=2.7e-06  Score=52.88  Aligned_cols=72  Identities=21%  Similarity=0.213  Sum_probs=46.1

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--Ce---Eec-------cCCCceEEecCCCcccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQ---FID-------LESSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~---~~~-------~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                      |..+.+.+|++++|.|.. .......+.|++.  |+   .|.       .....++....     ......|.|..+..+
T Consensus         8 P~~l~~~~G~svtL~C~~-s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~-----~~~~~~L~I~~~~~~   81 (109)
T d1mqkl_           8 PVSLSASVGETVTITCRA-SENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSG-----SGTQFSLKINSLLPE   81 (109)
T ss_dssp             CSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGG
T ss_pred             CCEEEECCCCCEEEEEEe-CCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEec-----cCCEEEEEEcccccc
Confidence            456778899999999996 4444556999982  22   111       00111111111     122346899999999


Q ss_pred             ccceeEEEEe
Q psy15128        273 SDDQWKLIAK  282 (292)
Q Consensus       273 ~~g~y~C~a~  282 (292)
                      |+|.|.|.+.
T Consensus        82 DSa~YyCA~~   91 (109)
T d1mqkl_          82 DFGSYYCQHH   91 (109)
T ss_dssp             GCEEEEEEEC
T ss_pred             CCeeEEEeee
Confidence            9999999876

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.20  E-value=5.1e-06  Score=52.56  Aligned_cols=80  Identities=14%  Similarity=0.061  Sum_probs=48.3

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeE--cCeEec----c-CCCceEEec--CCCcccc----ccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKK--NGQFID----L-ESSKRVSIL--GDPWFDS----RRSRSIFGSVLGA  271 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~--~g~~~~----~-~~~~~~~~~--~~~~~~~----~~~~~l~i~~~~~  271 (292)
                      |....+.+|++++|+|.. .+.....+.|++  .|+.+.    . .........  ....+..    .....|.|..+..
T Consensus         8 P~~~~~~~G~~v~L~C~~-~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~   86 (118)
T d2ij0c1           8 PSMVIVKSGTSVKIECRS-LDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHP   86 (118)
T ss_dssp             CSEEEECTTCCEEEEEEE-CSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCG
T ss_pred             CCeEEEcCCCCEEEEEEE-cCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccccccc
Confidence            345678999999999996 555556899998  232211    0 011111100  0111111    1123589999999


Q ss_pred             cccceeEEEEeecc
Q psy15128        272 LSDDQWKLIAKNIR  285 (292)
Q Consensus       272 ~~~g~y~C~a~n~~  285 (292)
                      +|+|.|.|.+.-..
T Consensus        87 ~Dsa~YyCa~~~~~  100 (118)
T d2ij0c1          87 EDSGFYVCSALAGS  100 (118)
T ss_dssp             GGCEEEEEEEECSS
T ss_pred             ccCceEEEEEecCC
Confidence            99999999986543

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.20  E-value=3.4e-06  Score=52.47  Aligned_cols=71  Identities=15%  Similarity=0.229  Sum_probs=44.9

Q ss_pred             ccEEecCCcEEEEEEEeeeC---CCeeEEEEC---CeEEee-cc-----CCCcceeEEe---eecEEEEccCCCCCCeEE
Q psy15128         45 DQKVGLNGIASFQCVAEGSP---LPSVFWTQE---GSQVLM-FP-----GNAYGHLHVT---QEGTLRIQGVQKEDAGFF  109 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~---~~~v~W~~~---~~~~~~-~~-----~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y  109 (292)
                      ...+.+|++++|.|...+..   ...+.|||.   .....+ ..     .....++...   ....|.|.+++.+|+|.|
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Y   88 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY   88 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeE
Confidence            56788999999999986432   224889983   222111 11     1111222222   233799999999999999


Q ss_pred             EEEEEe
Q psy15128        110 VCSALS  115 (292)
Q Consensus       110 ~C~~~~  115 (292)
                      .|....
T Consensus        89 yCa~~~   94 (110)
T d1oaql_          89 FCALWY   94 (110)
T ss_dssp             EEEEEE
T ss_pred             EEEccc
Confidence            998653

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=3.8e-06  Score=50.70  Aligned_cols=68  Identities=15%  Similarity=0.148  Sum_probs=40.3

Q ss_pred             cCCcEEEEEEEeee-CC-CeeEEEECCeEEeeccC---CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         50 LNGIASFQCVAEGS-PL-PSVFWTQEGSQVLMFPG---NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        50 ~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      .|+.++|.|.+.|+ |. ..|.|.+++..+.....   .......+...+.|.+   ...+...|+|.+.+.....
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~---~~~~~~~ytC~V~H~sl~~   86 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAV---PPQDTAPYSCHVQHSSLAQ   86 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEE---CTTCCSCEEEEEEETTCSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEe---CCCCCCEEEEEEEECCCCC
Confidence            47889999999996 43 37999999876521000   0000111122223444   4455668999999875543

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.19  E-value=2.4e-06  Score=53.47  Aligned_cols=74  Identities=20%  Similarity=0.315  Sum_probs=47.0

Q ss_pred             CCccEEecCCcEEEEEEEeee--CCCeeEEEECC-----eEEeec----cCCCcceeEEee---ecEEEEccCCCCCCeE
Q psy15128         43 PQDQKVGLNGIASFQCVAEGS--PLPSVFWTQEG-----SQVLMF----PGNAYGHLHVTQ---EGTLRIQGVQKEDAGF  108 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~-----~~~~~~----~~~~~~~~~~~~---~~~l~i~~~~~~d~g~  108 (292)
                      |..+.+.+|++++|.|...+.  ....+.||+..     ..+...    ......+.....   ...|.|.+++++|+|.
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~   86 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcc
Confidence            345778899999999987653  23469999741     111111    011112222222   2479999999999999


Q ss_pred             EEEEEEeC
Q psy15128        109 FVCSALSV  116 (292)
Q Consensus       109 Y~C~~~~~  116 (292)
                      |.|.+...
T Consensus        87 YyCA~~~~   94 (111)
T d1rzfl1          87 YYCGTWDS   94 (111)
T ss_dssp             EEEEEEET
T ss_pred             eEEeecCC
Confidence            99987643

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.19  E-value=2.5e-06  Score=53.91  Aligned_cols=81  Identities=14%  Similarity=0.132  Sum_probs=47.7

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--CeEe----ccCC-CceEEecCCCccc---ccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQFI----DLES-SKRVSILGDPWFD---SRRSRSIFGSVLGALSD  274 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~~----~~~~-~~~~~~~~~~~~~---~~~~~~l~i~~~~~~~~  274 (292)
                      +..+.+.+|++|+|.|..........+.|++.  |+.+    .... .........-...   ......|.|..+..+|+
T Consensus         6 p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   85 (115)
T d1fo0a_           6 QTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDS   85 (115)
T ss_dssp             CCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             CCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCcccc
Confidence            45678999999999998644444557899982  2211    0000 0000000000000   11234699999999999


Q ss_pred             ceeEEEEeecc
Q psy15128        275 DQWKLIAKNIR  285 (292)
Q Consensus       275 g~y~C~a~n~~  285 (292)
                      |.|.|.+....
T Consensus        86 a~YyCa~~~~~   96 (115)
T d1fo0a_          86 AVYFCAMRGDY   96 (115)
T ss_dssp             EEEEEEEECCC
T ss_pred             ccccceeecCC
Confidence            99999986543

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.18  E-value=3.1e-06  Score=52.43  Aligned_cols=73  Identities=12%  Similarity=0.124  Sum_probs=45.9

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--Ce---Eecc-------CCCceEEecCCCcccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQ---FIDL-------ESSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~---~~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                      |....+.+|++++|.|.. .......+.|++.  |+   .|..       ....++.....     .....|.|..+.++
T Consensus         8 p~~l~~~~G~svtl~C~~-s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~-----~~~~~L~I~~~~~~   81 (107)
T d1mexl1           8 QKFMSTSLGNRVSVTCKA-SQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGS-----GTDFTLTINNVQSE   81 (107)
T ss_dssp             CSEEEECTTSCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-----TTEEEEEESSCCGG
T ss_pred             CCeEEECCCCCEEEEEEe-CCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCC-----CCeeeeeechhhee
Confidence            456788999999999986 4444456899972  21   1110       00111111111     22346999999999


Q ss_pred             ccceeEEEEee
Q psy15128        273 SDDQWKLIAKN  283 (292)
Q Consensus       273 ~~g~y~C~a~n  283 (292)
                      |++.|.|.+..
T Consensus        82 DsA~YyCa~~~   92 (107)
T d1mexl1          82 DLAEYFCQQYN   92 (107)
T ss_dssp             GCSEEEEEECS
T ss_pred             cceeEEEeECC
Confidence            99999997653

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.18  E-value=8e-06  Score=51.13  Aligned_cols=74  Identities=20%  Similarity=0.338  Sum_probs=46.3

Q ss_pred             eCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--e---EEee--------ccCCCcceeEEe----eecEEEEccCCC
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--S---QVLM--------FPGNAYGHLHVT----QEGTLRIQGVQK  103 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~---~~~~--------~~~~~~~~~~~~----~~~~l~i~~~~~  103 (292)
                      ..|....+.+|++++|.|.... ....+.|||..  +   -+..        .......+....    ....|+|.++++
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (112)
T d1kgce1           4 QSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQ   82 (112)
T ss_dssp             EECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCG
T ss_pred             ECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCc
Confidence            3455667889999999998643 34578999831  1   1100        111111222111    123799999999


Q ss_pred             CCCeEEEEEEEe
Q psy15128        104 EDAGFFVCSALS  115 (292)
Q Consensus       104 ~d~g~Y~C~~~~  115 (292)
                      +|+|.|.|.+..
T Consensus        83 ~Dsa~YyCa~~~   94 (112)
T d1kgce1          83 EDSAVYLCASSL   94 (112)
T ss_dssp             GGCEEEEEEEES
T ss_pred             CCCEEEEEeeeC
Confidence            999999998753

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.17  E-value=1.9e-06  Score=53.49  Aligned_cols=76  Identities=16%  Similarity=0.145  Sum_probs=45.8

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--CeE---eccCCCceEEecCCCccc---cccccccccccccccccce
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQF---IDLESSKRVSILGDPWFD---SRRSRSIFGSVLGALSDDQ  276 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~---~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~~~g~  276 (292)
                      |..+.+.+|++|+|.|.. .......+.|++-  |+.   |..... .........+.   ......|.|..+..+|+|.
T Consensus         8 P~s~~~~~G~~vtl~C~~-s~~~~~~~~WYrq~~g~~~~~l~~~~~-~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   85 (107)
T d3cx5k1           8 PVSLAASLGDRVTISCRA-SQDINNFLNWYQQKPDGTIKLLIYYTS-RLHAGVPSRFSGSGSGTDYSLTISNLEPEDIAT   85 (107)
T ss_dssp             STTCCBCSSSCCEEEEEE-SSCCTTCEEEEEECTTSCEEEEEETTT-EECTTCCTTCCCEEETTEEEEECSCCCSCCCSE
T ss_pred             CCEEEECCCCCEEEEEEc-CCCcCCCeEEEEcCCCCcceEEEEeec-ccCCCcCCCEEEEccCCEEEEEEeEeeecCCCc
Confidence            345678899999999986 5555567999982  221   100000 00000000111   1223479999999999999


Q ss_pred             eEEEEe
Q psy15128        277 WKLIAK  282 (292)
Q Consensus       277 y~C~a~  282 (292)
                      |.|.+.
T Consensus        86 YyCa~~   91 (107)
T d3cx5k1          86 YFCQHH   91 (107)
T ss_dssp             EEEEEC
T ss_pred             EEeeeC
Confidence            999764

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.17  E-value=7e-06  Score=51.39  Aligned_cols=74  Identities=14%  Similarity=0.252  Sum_probs=46.4

Q ss_pred             CCCccEEecCCcEEEEEEEeeeC-CCeeEEEEC--CeEEe--ecc-C----CCcceeEEee---ecEEEEccCCCCCCeE
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGSP-LPSVFWTQE--GSQVL--MFP-G----NAYGHLHVTQ---EGTLRIQGVQKEDAGF  108 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~~-~~~v~W~~~--~~~~~--~~~-~----~~~~~~~~~~---~~~l~i~~~~~~d~g~  108 (292)
                      .|..+.+.+|++++|.|...+.. ...+.|||.  +....  ... .    ....+.....   ...|.|.++.++|+|.
T Consensus         4 qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~   83 (112)
T d1kgcd1           4 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAV   83 (112)
T ss_dssp             CCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             CCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeeccccccee
Confidence            35567788999999999886543 345899983  21111  100 0    1111121111   2369999999999999


Q ss_pred             EEEEEEe
Q psy15128        109 FVCSALS  115 (292)
Q Consensus       109 Y~C~~~~  115 (292)
                      |.|.+..
T Consensus        84 YyCa~~~   90 (112)
T d1kgcd1          84 YYCILPL   90 (112)
T ss_dssp             EEEECCC
T ss_pred             EeeeEec
Confidence            9997653

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.16  E-value=8.8e-06  Score=51.03  Aligned_cols=75  Identities=12%  Similarity=0.256  Sum_probs=46.7

Q ss_pred             EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEEC--CeEE--e-eccCC-------CcceeEEe----eecEEEEccCCC
Q psy15128         40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE--GSQV--L-MFPGN-------AYGHLHVT----QEGTLRIQGVQK  103 (292)
Q Consensus        40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~--~~~~--~-~~~~~-------~~~~~~~~----~~~~l~i~~~~~  103 (292)
                      ...|....+.+|++++|.|... .....+.|||.  +...  . .....       ...+....    ....|.|.++..
T Consensus         4 ~QsP~~~~~~~G~~v~l~C~~~-~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   82 (113)
T d1j8he1           4 TQSSRYLVKRTGEKVFLECVQD-MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAST   82 (113)
T ss_dssp             EESCSEEEEETTCCEEECEEES-SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCG
T ss_pred             EccCCEEEECCCCCEEEEEEEc-CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCcc
Confidence            3456667788999999999864 23457889983  2111  1 10000       01111111    123799999999


Q ss_pred             CCCeEEEEEEEe
Q psy15128        104 EDAGFFVCSALS  115 (292)
Q Consensus       104 ~d~g~Y~C~~~~  115 (292)
                      +|+|.|.|.+..
T Consensus        83 ~Dsa~YyCa~~~   94 (113)
T d1j8he1          83 NQTSMYLCASSS   94 (113)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             CCcccEEeeEcc
Confidence            999999998764

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.6e-06  Score=52.47  Aligned_cols=70  Identities=17%  Similarity=0.222  Sum_probs=44.4

Q ss_pred             CCCceEEEeeCCCCCCC-CeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        212 SGETALLECGPPKGQPE-PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      .|+.++|.|.|.+.+|. ..++|.+||+.+............++.+...     ....+...+...|+|.+....-
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~-----s~l~~~~~~~~~ytC~V~H~sl   84 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSW-----VVVAVPPQDTAPYSCHVQHSSL   84 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEE-----EEEEECTTCCSCEEEEEEETTC
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEE-----EEeEeCCCCCCEEEEEEEECCC
Confidence            47789999999554665 4999999999875332333333444444322     1222344556689999987643

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.16  E-value=2.1e-06  Score=53.73  Aligned_cols=78  Identities=18%  Similarity=0.153  Sum_probs=46.7

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--CeE---ec-cCCCceEEecCCCc---cccccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQF---ID-LESSKRVSILGDPW---FDSRRSRSIFGSVLGALSDD  275 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~---~~-~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~~~g  275 (292)
                      |....+.+|++++|.|.. .......+.|++-  |+.   +. ..............   ........|.|..+..+|+|
T Consensus         6 P~~~~~~~G~~vtl~C~~-~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   84 (110)
T d1u3ha1           6 PQSLTVWEGETAILNCSY-ENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSA   84 (110)
T ss_dssp             CSSEEEETTSCEEEEEEE-CCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCS
T ss_pred             CCEEEEcCCCCEEEEEEe-cCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCce
Confidence            456788999999999986 4444457899983  221   10 00001000000000   01122346999999999999


Q ss_pred             eeEEEEee
Q psy15128        276 QWKLIAKN  283 (292)
Q Consensus       276 ~y~C~a~n  283 (292)
                      .|.|.+.-
T Consensus        85 ~YyCa~~~   92 (110)
T d1u3ha1          85 TYFCAASA   92 (110)
T ss_dssp             EEEECCEE
T ss_pred             eEeeeecC
Confidence            99998863

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=98.16  E-value=1.4e-06  Score=52.83  Aligned_cols=69  Identities=12%  Similarity=-0.025  Sum_probs=45.8

Q ss_pred             CCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        213 GETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      ++.++|.|.|.+.+|.. .++|++|+..+............++.|....  .|.+   ...+...|+|.+....-
T Consensus        16 ~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S--~L~v---~~~~~~~ytC~V~H~sL   85 (96)
T d2h26a1          16 PGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRA--TLDV---ADGEAAGLSCRVKHSSL   85 (96)
T ss_dssp             TTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEE--EEEE---EGGGCTTEEEEEEEGGG
T ss_pred             CCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEE--EEEE---eCccCCEEEEEEEeCCC
Confidence            45789999995557766 9999999988753333334455555554332  2223   34566689999998764

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=3.9e-07  Score=56.48  Aligned_cols=75  Identities=13%  Similarity=0.034  Sum_probs=45.6

Q ss_pred             CCCceEEEeeCCCCCCC-CeEEEeEcCeEeccCCCc--eEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128        212 SGETALLECGPPKGQPE-PTLHWKKNGQFIDLESSK--RVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      .++.++|.|.+.+.+|. ..|.|.+||+.+......  ......++.|..  ...|.+..-.......|+|.|+......
T Consensus        18 ~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~--~S~L~v~~~~W~~g~~ytC~V~H~~l~~   95 (105)
T d1fp5a2          18 SRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFV--FSRLEVTRAEWEQKDEFICRAVHEAASP   95 (105)
T ss_dssp             SSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEE--EEEEEECHHHHTTGGGEEEEEECTTSTT
T ss_pred             cCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEE--EEEEEECHHHcCCCCEEEEEEEECCCCC
Confidence            35678999999554664 599999999987532111  122233444332  2245554444444558999999865543

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.16  E-value=3.3e-06  Score=52.39  Aligned_cols=73  Identities=19%  Similarity=0.227  Sum_probs=46.5

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--Ce---Eecc-------CCCceEEecCCCcccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQ---FIDL-------ESSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~---~~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                      |....+.+|++|+|.|.. .......+.|++.  |.   .+..       ....++....     ......|.|..+..+
T Consensus         8 P~sl~~~~G~svtl~C~~-s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~-----~~~~~~L~I~~~~~~   81 (107)
T d1d5il1           8 PSSMYASLGERVTITCKA-SQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSG-----SGQDYSLTISSLEYE   81 (107)
T ss_dssp             CSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCCGG
T ss_pred             CCEEEECCCCCEEEEEEc-CCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecc-----cCCEEEccccccCCc
Confidence            456778999999999987 4444557889872  21   1110       0111111111     123347999999999


Q ss_pred             ccceeEEEEee
Q psy15128        273 SDDQWKLIAKN  283 (292)
Q Consensus       273 ~~g~y~C~a~n  283 (292)
                      |+|.|.|.+..
T Consensus        82 Dsa~YyCa~~~   92 (107)
T d1d5il1          82 DMGIYYCLQYD   92 (107)
T ss_dssp             GCEEEEEEECS
T ss_pred             CCEEEEeeecc
Confidence            99999997654

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=7.2e-06  Score=51.81  Aligned_cols=72  Identities=22%  Similarity=0.338  Sum_probs=43.4

Q ss_pred             CCccEEecCCcEEEEEEEeeeCCC---eeEEEEC--CeEE--e-e-ccC--------CCcceeEE-eeecEEEEccCCCC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSPLP---SVFWTQE--GSQV--L-M-FPG--------NAYGHLHV-TQEGTLRIQGVQKE  104 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~~~---~v~W~~~--~~~~--~-~-~~~--------~~~~~~~~-~~~~~l~i~~~~~~  104 (292)
                      |..+.+.+|+.++|.|........   .+.|+|.  ++..  . . ...        ........ .....|.|.+++.+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence            334556779999999998643222   4789983  2211  1 0 000        00111111 12237999999999


Q ss_pred             CCeEEEEEEE
Q psy15128        105 DAGFFVCSAL  114 (292)
Q Consensus       105 d~g~Y~C~~~  114 (292)
                      |+|.|.|.+.
T Consensus        86 Dsa~YyCa~~   95 (117)
T d1dqta_          86 DTGLYLCKVE   95 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             cCEeEEEEEe
Confidence            9999999875

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.5e-06  Score=55.09  Aligned_cols=77  Identities=13%  Similarity=0.156  Sum_probs=45.2

Q ss_pred             CcceEEeCCCceEEEeeCCCCC--CCCeEEEeEcC--eE---eccC-------CCceEEecCCCcccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQ--PEPTLHWKKNG--QF---IDLE-------SSKRVSILGDPWFDSRRSRSIFGSVLG  270 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~--p~~~~~W~~~g--~~---~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~  270 (292)
                      |..+.+.+|++|+|.|....+.  ....+.|++..  ..   +...       ...+..+..+.   ......|.|..++
T Consensus         6 P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~sL~I~~l~   82 (116)
T d1xeda_           6 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFP---ENGTFVVNIAQLS   82 (116)
T ss_dssp             CSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEET---TTTEEEEEECSCC
T ss_pred             CCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeC---CCCEEEEEEhhhC
Confidence            5678889999999999862222  12357898732  11   1000       01111111110   1222368999999


Q ss_pred             ccccceeEEEEeec
Q psy15128        271 ALSDDQWKLIAKNI  284 (292)
Q Consensus       271 ~~~~g~y~C~a~n~  284 (292)
                      .+|+|.|.|.+...
T Consensus        83 ~~DsG~Y~C~v~~~   96 (116)
T d1xeda_          83 QDDSGRYKCGLGIN   96 (116)
T ss_dssp             GGGCEEEEEEESCG
T ss_pred             cCCCEEEEEEEEcC
Confidence            99999999988643

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.15  E-value=2.6e-06  Score=53.40  Aligned_cols=71  Identities=18%  Similarity=0.391  Sum_probs=46.2

Q ss_pred             ccEEecCCcEEEEEEEeee--CCCeeEEEECC--e--EEeecc-----CCCcceeEEee---ecEEEEccCCCCCCeEEE
Q psy15128         45 DQKVGLNGIASFQCVAEGS--PLPSVFWTQEG--S--QVLMFP-----GNAYGHLHVTQ---EGTLRIQGVQKEDAGFFV  110 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~--~--~~~~~~-----~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y~  110 (292)
                      .+.+.+|++++|.|...+.  ....+.||+..  .  .+....     .....+.....   ...|.|.+++.+|++.|.
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Yy   88 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYY   88 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEE
Confidence            5677889999999988654  34578999842  1  111110     11112222222   347999999999999999


Q ss_pred             EEEEe
Q psy15128        111 CSALS  115 (292)
Q Consensus       111 C~~~~  115 (292)
                      |....
T Consensus        89 CA~~~   93 (114)
T d2rhea_          89 CAAWN   93 (114)
T ss_dssp             EEEEE
T ss_pred             EeecC
Confidence            98764

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.15  E-value=2.5e-06  Score=52.30  Aligned_cols=70  Identities=16%  Similarity=0.155  Sum_probs=46.4

Q ss_pred             eCCCceEEEeeCCCCCCC-CeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        211 ASGETALLECGPPKGQPE-PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       211 ~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      ..|+..+|.|.+.+.+|. ..+.|.+||..+............++.|....  .|.   +...+...|+|.++...
T Consensus        16 e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S--~L~---v~~~~~~~ytC~V~H~~   86 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFS--YLN---FTPEPSDIFSCIVTHEP   86 (103)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEE--EEE---ECCCTTCCEEEEEEETT
T ss_pred             hcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEE--EEE---EecCCCCEEEEEEEeCC
Confidence            457888999999444664 49999999998754444445555565555332  222   23445558999999864

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.14  E-value=1.1e-05  Score=50.64  Aligned_cols=74  Identities=19%  Similarity=0.364  Sum_probs=46.6

Q ss_pred             eCCCccEEecCCcEEEEEEEeeeCCCeeEEEEC--CeEEe-ec---------cCCCcceeEEee----ecEEEEccCCCC
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE--GSQVL-MF---------PGNAYGHLHVTQ----EGTLRIQGVQKE  104 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~--~~~~~-~~---------~~~~~~~~~~~~----~~~l~i~~~~~~  104 (292)
                      ..|....+.+|++++|.|...+ ....+.|||.  ++... +.         ......+.....    ...|+|.++.++
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (113)
T d2ntsp1           4 QTPRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELG   82 (113)
T ss_dssp             EECSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGG
T ss_pred             eCCCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcc
Confidence            3455677889999999998644 3357899982  22111 00         011111111111    237999999999


Q ss_pred             CCeEEEEEEEe
Q psy15128        105 DAGFFVCSALS  115 (292)
Q Consensus       105 d~g~Y~C~~~~  115 (292)
                      |+|.|.|.+..
T Consensus        83 Dsa~YyCA~~~   93 (113)
T d2ntsp1          83 DSALYLCASSL   93 (113)
T ss_dssp             GCEEEEEEEES
T ss_pred             cceeeeeeeeC
Confidence            99999998764

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.14  E-value=4.3e-06  Score=52.07  Aligned_cols=73  Identities=18%  Similarity=0.229  Sum_probs=46.2

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--C---eEeccC-------CCceEEecCCCcccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--G---QFIDLE-------SSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g---~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                      |..+.+.+|++++|.|.. .+.....+.|++.  |   +.|...       ...++....     ......|.|..+..+
T Consensus        10 P~~l~~~~G~svtL~C~~-s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~-----~~~~~~L~I~~l~~~   83 (109)
T d1bwwa_          10 PSSLSASVGDRVTITCQA-SQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSG-----SGTDYTFTISSLQPE   83 (109)
T ss_dssp             CSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGG
T ss_pred             CCEEEECCCCCEEEEEEe-cCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeC-----CCCEeEEEEeeceeC
Confidence            456778999999999997 5544557889982  2   112100       011111110     022236899999999


Q ss_pred             ccceeEEEEee
Q psy15128        273 SDDQWKLIAKN  283 (292)
Q Consensus       273 ~~g~y~C~a~n  283 (292)
                      |+|.|.|.+..
T Consensus        84 Dsa~YyCA~~~   94 (109)
T d1bwwa_          84 DIATYYCQQYQ   94 (109)
T ss_dssp             GCEEEEEEECS
T ss_pred             cCceEEEeecC
Confidence            99999998754

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.13  E-value=2.3e-06  Score=51.94  Aligned_cols=72  Identities=24%  Similarity=0.339  Sum_probs=45.7

Q ss_pred             eCCCceEEEeeCCCCCC-CCeEEEeEcCeEeccCC-CceEEecCCCccccccccccccccccccccceeEEEEeecccc
Q psy15128        211 ASGETALLECGPPKGQP-EPTLHWKKNGQFIDLES-SKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQ  287 (292)
Q Consensus       211 ~~g~~~~l~C~~~~~~p-~~~~~W~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~  287 (292)
                      ..++.++|.|.|.+.+| ...++|.+||+.+.... ........++.|....  .|.   +...+...|+|.++.....
T Consensus        15 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s--~L~---v~~~~~~~ytC~V~H~sl~   88 (98)
T d1hdmb1          15 NTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLS--HLA---LTPSYGDTYTCVVEHIGAP   88 (98)
T ss_dssp             SSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEE--EEE---ECCCTTCCEEEEEECTTSS
T ss_pred             cCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEE--EeE---cCCCCCCEEEEEEEeCCCC
Confidence            34678899999944455 44999999999885332 2233444555554332  222   2344556899999987544

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.13  E-value=2e-05  Score=47.65  Aligned_cols=70  Identities=13%  Similarity=0.271  Sum_probs=42.3

Q ss_pred             EecCCcEEEEEEEeee-C-CCeeEEEECCeEEeeccCCC----cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         48 VGLNGIASFQCVAEGS-P-LPSVFWTQEGSQVLMFPGNA----YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        48 ~~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      ...++.++|.|.+.|+ | ...+.|.++|..+.......    .....+...+.|.+.   .++...|+|.+.+.....
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~---~~~~~~ytC~V~H~sl~~   89 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALT---PSYGDTYTCVVEHIGAPE   89 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEEC---CCTTCCEEEEEECTTSSS
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcC---CCCCCEEEEEEEeCCCCC
Confidence            3456789999999996 3 44799999998663211000    011112222345553   445568999999875543

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=2e-05  Score=44.61  Aligned_cols=74  Identities=12%  Similarity=0.187  Sum_probs=47.7

Q ss_pred             ccEEecCCcEEEEEEEee-eCCCeeEEEECCeEE-eeccCCCcceeEEeee-----cEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         45 DQKVGLNGIASFQCVAEG-SPLPSVFWTQEGSQV-LMFPGNAYGHLHVTQE-----GTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~-~~~~~~~~~~~~~~~~-----~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      ...+..|+.+.|.|.+.- ...|.++|-|-++.. ...............+     -.|.+.++-++|.|.|+|.+.-..
T Consensus        12 ~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s   91 (104)
T d1xaua_          12 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS   91 (104)
T ss_dssp             EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             eeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCCh
Confidence            456889999999999975 357899998844321 1111111111111111     168899999999999999987543


Q ss_pred             c
Q psy15128        118 G  118 (292)
Q Consensus       118 ~  118 (292)
                      +
T Consensus        92 ~   92 (104)
T d1xaua_          92 Q   92 (104)
T ss_dssp             E
T ss_pred             h
Confidence            3

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=3.3e-06  Score=51.07  Aligned_cols=69  Identities=14%  Similarity=0.216  Sum_probs=43.6

Q ss_pred             cCCcEEEEEEEee-eCCCeeEEEECCeEEeeccC---CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCee
Q psy15128         50 LNGIASFQCVAEG-SPLPSVFWTQEGSQVLMFPG---NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT  121 (292)
Q Consensus        50 ~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~  121 (292)
                      .++.++|.|.+.| +|.+.|.|++++..+.....   .......+...+.|.+.   ..+...|+|.+.+......
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~~   87 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRVN   87 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCEE
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCCc
Confidence            4677899999988 58889999999876531110   00011122333456665   3456789999998765544

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.13  E-value=4.9e-06  Score=51.96  Aligned_cols=74  Identities=22%  Similarity=0.258  Sum_probs=45.8

Q ss_pred             CcceEEeCCCceEEEeeCCCCCC---CCeEEEeEc--CeE---ecc-------CCCceEEecCCCccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQP---EPTLHWKKN--GQF---IDL-------ESSKRVSILGDPWFDSRRSRSIFGSVL  269 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~--g~~---~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~  269 (292)
                      |..+.+.+|++|+|.|.+..+.+   ...+.|++.  |+.   |..       ....+.....+     .....|.|..+
T Consensus         8 P~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~-----~~~~~L~I~~~   82 (111)
T d1j05a_           8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGS-----RTDFTLIIDPV   82 (111)
T ss_dssp             CSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECS-----SSEEEEEESSC
T ss_pred             CCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecC-----CCEEEEEEccc
Confidence            45677889999999997633222   234899982  321   110       11112222111     23347999999


Q ss_pred             cccccceeEEEEee
Q psy15128        270 GALSDDQWKLIAKN  283 (292)
Q Consensus       270 ~~~~~g~y~C~a~n  283 (292)
                      ..+|+|.|.|.+.+
T Consensus        83 ~~~Dsa~YyCa~~~   96 (111)
T d1j05a_          83 EADDVATYYCQQTN   96 (111)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             ccccCccEEEeecC
Confidence            99999999998764

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.12  E-value=6.2e-06  Score=51.70  Aligned_cols=76  Identities=16%  Similarity=0.364  Sum_probs=47.4

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--e---EEee-c------cCCCcceeEE----eeecEEEEccCC
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--S---QVLM-F------PGNAYGHLHV----TQEGTLRIQGVQ  102 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~---~~~~-~------~~~~~~~~~~----~~~~~l~i~~~~  102 (292)
                      +...|....+.+|+.++|.|.... ....+.|||..  +   -+.. .      ......++..    .....|+|.+++
T Consensus         4 VtQ~P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (113)
T d1nfdb1           4 VVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALE   82 (113)
T ss_dssp             CEEECSEEEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCC
T ss_pred             EEEcCCEEEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccC
Confidence            344566677889999999998643 34579999842  1   1100 0      0011111111    112379999999


Q ss_pred             CCCCeEEEEEEEe
Q psy15128        103 KEDAGFFVCSALS  115 (292)
Q Consensus       103 ~~d~g~Y~C~~~~  115 (292)
                      .+|+|.|.|.+..
T Consensus        83 ~~Dsa~YyCa~~~   95 (113)
T d1nfdb1          83 LEDSAMYFCASSL   95 (113)
T ss_dssp             GGGCEEECEEEES
T ss_pred             cCCceeEEEEeec
Confidence            9999999998754

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.12  E-value=1.9e-05  Score=48.09  Aligned_cols=70  Identities=16%  Similarity=0.174  Sum_probs=42.8

Q ss_pred             EecCCcEEEEEEEeee-C-CCeeEEEECCeEEeec--cCC--CcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         48 VGLNGIASFQCVAEGS-P-LPSVFWTQEGSQVLMF--PGN--AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        48 ~~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~--~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      ...|+..+|.|.+.|+ | ...|.|.++|..+...  ...  ......+...+.|.+..   .+...|+|.+.+.....
T Consensus        16 ~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~sl~~   91 (101)
T d1fnga1          16 VNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLP---STDDFYDCEVDHWGLEE   91 (101)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECC---CTTCCEEEEEECTTCSS
T ss_pred             ccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcC---CCCCEEEEEEEECCCCC
Confidence            3457788999999996 4 3489999999876321  000  01111223344566654   34457999999875443

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.6e-06  Score=53.33  Aligned_cols=82  Identities=15%  Similarity=0.155  Sum_probs=48.7

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCC--CeeEEEECCeEEeecc----CCCcceeEEeeecEEEEccCCCCCCeEE
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPL--PSVFWTQEGSQVLMFP----GNAYGHLHVTQEGTLRIQGVQKEDAGFF  109 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~v~W~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~g~Y  109 (292)
                      +|.+.+.+.......++.++|.|.+.++.+  ..|.|.++|..+....    ........+...+.|.|..........|
T Consensus         5 ~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~y   84 (102)
T d1rzfl2           5 APSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSY   84 (102)
T ss_dssp             CCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCE
T ss_pred             CCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEE
Confidence            444444333332334677999999999633  3799999997653210    0001111233345677776665556679


Q ss_pred             EEEEEeCC
Q psy15128        110 VCSALSVA  117 (292)
Q Consensus       110 ~C~~~~~~  117 (292)
                      +|.+.+..
T Consensus        85 tC~V~H~~   92 (102)
T d1rzfl2          85 SCQVTHEG   92 (102)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEECC
Confidence            99999864

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=6.4e-06  Score=52.13  Aligned_cols=73  Identities=25%  Similarity=0.377  Sum_probs=43.9

Q ss_pred             CCccEEecCCcEEEEEEEeeeCCC---eeEEEECCe----EEe-e-c-cCC-------Ccc-eeEEeeecEEEEccCCCC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSPLP---SVFWTQEGS----QVL-M-F-PGN-------AYG-HLHVTQEGTLRIQGVQKE  104 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~~~---~v~W~~~~~----~~~-~-~-~~~-------~~~-~~~~~~~~~l~i~~~~~~  104 (292)
                      |..+.+.+|+.++|.|........   .+.|+|...    ++. . . ...       ... .........|.|.+++.+
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAM   85 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGG
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccC
Confidence            334556779999999998543322   588998431    111 0 0 000       000 001112337999999999


Q ss_pred             CCeEEEEEEEe
Q psy15128        105 DAGFFVCSALS  115 (292)
Q Consensus       105 d~g~Y~C~~~~  115 (292)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (118)
T d1i8lc_          86 DTGLYICKVEL   96 (118)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCEEEEEeEec
Confidence            99999998753

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.11  E-value=7.4e-06  Score=51.20  Aligned_cols=77  Identities=14%  Similarity=0.118  Sum_probs=46.9

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--CeE---ec-cCCCceEEecCCCc----ccccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQF---ID-LESSKRVSILGDPW----FDSRRSRSIFGSVLGALSD  274 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~---~~-~~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~~~  274 (292)
                      ++.+.+.+|++++|.|.. .......+.|++-  |+.   +. ......... ....    ........|.|..+..+|+
T Consensus         7 p~s~~~~~G~svtl~C~~-s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~I~~~~~~Ds   84 (111)
T d1bd2d1           7 SPSLSVQEGRISILNCDY-TNSMFDYFLWYKKYPAEGPTFLISISSIKDKNA-DGRFTVFLNKSAKHLSLHIVPSQPGDS   84 (111)
T ss_dssp             CSEEEEETTSCEEEEEEE-CCTTCCEEEEEEECTTSCCEEEEEEETTCSEEE-ETTEEEEEETTTTEEEEEESSCCGGGC
T ss_pred             CCEEEEcCCCCEEEEEEe-CCCCCCeEEEEEECCCCcceeeeeeeceecccc-CCcceEEEEccCCEEEEEECCCccccc
Confidence            456778999999999986 4545567889882  221   11 000000000 0111    0112345789999999999


Q ss_pred             ceeEEEEee
Q psy15128        275 DQWKLIAKN  283 (292)
Q Consensus       275 g~y~C~a~n  283 (292)
                      |.|.|.+..
T Consensus        85 a~YyCa~~~   93 (111)
T d1bd2d1          85 AVYFCAAME   93 (111)
T ss_dssp             EEEEEEEES
T ss_pred             EEEEeeccC
Confidence            999998763

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.11  E-value=6.9e-07  Score=55.27  Aligned_cols=75  Identities=16%  Similarity=0.071  Sum_probs=47.3

Q ss_pred             CCceEEEeeCCCCCCC-CeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccc
Q psy15128        213 GETALLECGPPKGQPE-PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ  289 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~  289 (292)
                      ++.+.|.|.|...+|. ..|.|.+||+.+............++.|.  ....|.+..-...+...|+|.|++......
T Consensus        20 ~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys--~~S~l~v~~~~w~~~~~ytC~V~H~~~~~~   95 (104)
T d1nfde2          20 TNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYM--TSSYLSLTADQWKSHNRVSCQVTHEGETVE   95 (104)
T ss_dssp             TTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEE--EEEBCCEEHHHHHTCSCEEEEEECTTTTCC
T ss_pred             CCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEE--EEEEEEEcHHHcCCCCEEEEEEEECCCcEE
Confidence            5678899999544664 49999999999863332222233343332  223455554555556689999998765544

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=8.1e-06  Score=50.60  Aligned_cols=72  Identities=17%  Similarity=0.223  Sum_probs=46.7

Q ss_pred             cCCcEEEEEEEeee-CC-CeeEEEECCeEEeec-----cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCee
Q psy15128         50 LNGIASFQCVAEGS-PL-PSVFWTQEGSQVLMF-----PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT  121 (292)
Q Consensus        50 ~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~  121 (292)
                      .++.++|.|.+.++ |. ..|.|.++|......     .........+...+.|.|..-.......|+|.+.+......
T Consensus        19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~~~p   97 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP   97 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred             cCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCCCCc
Confidence            46789999999986 43 479999998755311     01111112344456788877666666689999998654433

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.11  E-value=2e-06  Score=52.60  Aligned_cols=69  Identities=20%  Similarity=0.184  Sum_probs=42.6

Q ss_pred             CCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCC-ceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        212 SGETALLECGPPKGQPEP-TLHWKKNGQFIDLESS-KRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      .|+.++|.|.|...+|.. .+.|.+||+++..+.. ......+++.|....  .|.+   ...+...|+|.++...
T Consensus        18 ~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S--~L~v---~~~~~~~ytC~V~H~s   88 (101)
T d1fnga1          18 LGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFH--YLTF---LPSTDDFYDCEVDHWG   88 (101)
T ss_dssp             TTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEE--EEEE---CCCTTCCEEEEEECTT
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEE--EeEE---cCCCCCEEEEEEEECC
Confidence            467788999995556644 9999999998853211 122234444444322  2333   2344568999998764

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.10  E-value=3.3e-05  Score=48.76  Aligned_cols=77  Identities=17%  Similarity=0.295  Sum_probs=49.0

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeeeC--CCeeEEEEC--Ce--EEeecc-----CCCcceeEEee-----ecEEEEccCC
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGSP--LPSVFWTQE--GS--QVLMFP-----GNAYGHLHVTQ-----EGTLRIQGVQ  102 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~--~~~~~~-----~~~~~~~~~~~-----~~~l~i~~~~  102 (292)
                      ++..+..+.+.+|++++|.|...+..  ...+.|||.  ++  ......     .....++....     ...|.|.+++
T Consensus         4 vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~   83 (120)
T d1hxma1           4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS   83 (120)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             EeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccc
Confidence            34455667788999999999987543  346899983  21  111111     11112222221     2379999999


Q ss_pred             CCCCeEEEEEEEe
Q psy15128        103 KEDAGFFVCSALS  115 (292)
Q Consensus       103 ~~d~g~Y~C~~~~  115 (292)
                      ++|+|.|.|....
T Consensus        84 ~~Dsa~YyCA~~~   96 (120)
T d1hxma1          84 ERDEGSYYCACDT   96 (120)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ccCCceeecCccc
Confidence            9999999998654

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.10  E-value=8.9e-06  Score=49.08  Aligned_cols=78  Identities=17%  Similarity=0.238  Sum_probs=49.7

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      .|.+...| ...+..|++++|.|... .....+.++|++.......... ..........+.|.+++..|+|.|.|....
T Consensus         2 KPsLsa~P-~~~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~~-~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   78 (96)
T d1nkra1           2 KPSLLAHP-GPLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIG-EHHDGVSKANFSISRMTQDLAGTYRCYGSV   78 (96)
T ss_dssp             CCEEEEES-CSEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEEC-EEETTEEEEEEEESSCCGGGCEEEEEEEEB
T ss_pred             CCEEEeeC-CCccCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeeee-eecCCceEEEEEEcccCcccCeEEEEEEEc
Confidence            35555555 45688999999999874 3455788888764321100000 000011234799999999999999998764


Q ss_pred             C
Q psy15128        116 V  116 (292)
Q Consensus       116 ~  116 (292)
                      .
T Consensus        79 ~   79 (96)
T d1nkra1          79 T   79 (96)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.09  E-value=8.3e-06  Score=51.04  Aligned_cols=74  Identities=15%  Similarity=0.287  Sum_probs=46.0

Q ss_pred             eCCCccEEecCCcEEEEEEEeeeCCCeeEEEEC--CeEEe-e---------ccCCCcceeEEe----eecEEEEccCCCC
Q psy15128         41 VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE--GSQVL-M---------FPGNAYGHLHVT----QEGTLRIQGVQKE  104 (292)
Q Consensus        41 ~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~--~~~~~-~---------~~~~~~~~~~~~----~~~~l~i~~~~~~  104 (292)
                      ..|....+.+|++++|.|.... ....+.|||.  ++... +         ..+....+....    ....|.|.++.++
T Consensus         4 Q~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (112)
T d2bnub1           4 QTPKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPS   82 (112)
T ss_dssp             EECSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGG
T ss_pred             ECCCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHH
Confidence            3455567889999999998753 3457999983  21110 0         001111111111    1236999999999


Q ss_pred             CCeEEEEEEEe
Q psy15128        105 DAGFFVCSALS  115 (292)
Q Consensus       105 d~g~Y~C~~~~  115 (292)
                      |+|.|.|....
T Consensus        83 DsavYyCA~~~   93 (112)
T d2bnub1          83 QTSVYFCASSY   93 (112)
T ss_dssp             GCEEEEEEEEC
T ss_pred             HCEEEEEeecC
Confidence            99999998753

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.09  E-value=3.9e-06  Score=52.05  Aligned_cols=73  Identities=22%  Similarity=0.319  Sum_probs=46.0

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeEc--Ce---EeccCC-------CceEEecCCCccccccccccccccccccc
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKKN--GQ---FIDLES-------SKRVSILGDPWFDSRRSRSIFGSVLGALS  273 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~---~~~~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  273 (292)
                      +.+.+.+|++++|.|.. .......+.|++.  |+   .|....       ..+.....     ......|.|..+..+|
T Consensus         8 ~sl~~~~G~svtl~C~~-~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~l~~~D   81 (109)
T d1w72l1           8 PSVSVAPGQTARITCGG-NNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSN-----SGNMATLTISRVEAGD   81 (109)
T ss_dssp             SEEEECTTSCEEEEEEC-TTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-----ETTEEEEEESSCCGGG
T ss_pred             CeEEECCCCCEEEEEEc-CCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeec-----CCCccceEEeeeccCC
Confidence            46788999999999996 4444457999972  22   111000       11111111     1223368899999999


Q ss_pred             cceeEEEEeec
Q psy15128        274 DDQWKLIAKNI  284 (292)
Q Consensus       274 ~g~y~C~a~n~  284 (292)
                      ++.|.|.+...
T Consensus        82 savYyCA~~~~   92 (109)
T d1w72l1          82 EADYYCQVWDS   92 (109)
T ss_dssp             CEEEEEEEEET
T ss_pred             CEEEEEEecCC
Confidence            99999988643

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=2.5e-06  Score=53.66  Aligned_cols=70  Identities=14%  Similarity=0.227  Sum_probs=44.1

Q ss_pred             cEEecCCcEEEEEEEee--eCCCeeEEEECC--e--EEeec-cC-C------CcceeEEeee-----cEEEEccCCCCCC
Q psy15128         46 QKVGLNGIASFQCVAEG--SPLPSVFWTQEG--S--QVLMF-PG-N------AYGHLHVTQE-----GTLRIQGVQKEDA  106 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~--~~~~~v~W~~~~--~--~~~~~-~~-~------~~~~~~~~~~-----~~l~i~~~~~~d~  106 (292)
                      ..+.+|++++|.|.+.+  .....+.|+|..  .  .+... .. .      ..+++....+     ..|+|.+++.+|+
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Ds   88 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDS   88 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccC
Confidence            45678999999998764  244578899842  1  11111 11 0      1122322221     2699999999999


Q ss_pred             eEEEEEEEe
Q psy15128        107 GFFVCSALS  115 (292)
Q Consensus       107 g~Y~C~~~~  115 (292)
                      |.|.|.+..
T Consensus        89 g~Y~Cav~~   97 (113)
T d1smoa_          89 GLYQCVIYQ   97 (113)
T ss_dssp             EEEEEEECC
T ss_pred             ceEEEEEEC
Confidence            999998754

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.09  E-value=9.5e-06  Score=50.64  Aligned_cols=74  Identities=14%  Similarity=0.201  Sum_probs=46.0

Q ss_pred             CcceEEeCCCceEEEeeCCCCC-CCCeEEEeEc--Ce---Eecc-------CCCceEEecCCCccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQ-PEPTLHWKKN--GQ---FIDL-------ESSKRVSILGDPWFDSRRSRSIFGSVLGA  271 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~--g~---~~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  271 (292)
                      ++.+.+.+|++++|.|.+.... ....+.|++-  ++   .|..       ....++....+     .....|.|..++.
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~~~~   81 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKS-----GTSATLGITGLQT   81 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEE-----TTEEEEEESSCCG
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCC-----CCEeeeEEeeecc
Confidence            3467899999999999863322 2346999972  21   1110       11111111111     1224699999999


Q ss_pred             cccceeEEEEee
Q psy15128        272 LSDDQWKLIAKN  283 (292)
Q Consensus       272 ~~~g~y~C~a~n  283 (292)
                      +|+|.|.|.+..
T Consensus        82 ~Dsa~YyCA~~~   93 (111)
T d1rzfl1          82 GDEADYYCGTWD   93 (111)
T ss_dssp             GGCSEEEEEEEE
T ss_pred             ccCcceEEeecC
Confidence            999999998764

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.09  E-value=6.4e-06  Score=52.13  Aligned_cols=75  Identities=17%  Similarity=0.259  Sum_probs=46.7

Q ss_pred             CCCccEEecCCcEEEEEEEeee---C---CCeeEEEECCe---EEeeccC-------CCcceeEEe-----eecEEEEcc
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGS---P---LPSVFWTQEGS---QVLMFPG-------NAYGHLHVT-----QEGTLRIQG  100 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~---~---~~~v~W~~~~~---~~~~~~~-------~~~~~~~~~-----~~~~l~i~~  100 (292)
                      .|..+.+.+|+.|+|.|.+...   +   ...+.|++...   .......       ....+..+.     .+..|+|.+
T Consensus         6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   85 (118)
T d1qfoa_           6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD   85 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence            3556788999999999998531   1   12456776421   1111111       112222222     233699999


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy15128        101 VQKEDAGFFVCSALSV  116 (292)
Q Consensus       101 ~~~~d~g~Y~C~~~~~  116 (292)
                      ++.+|+|.|.|++...
T Consensus        86 v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          86 LKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             CCGGGCEEEEEEEECC
T ss_pred             CChhHCEEEEEEEEeC
Confidence            9999999999999754

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.08  E-value=2.7e-06  Score=51.78  Aligned_cols=70  Identities=16%  Similarity=0.149  Sum_probs=43.1

Q ss_pred             eCCCceEEEeeCCCCCCC-CeEEEeEcCeEeccCC-CceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        211 ASGETALLECGPPKGQPE-PTLHWKKNGQFIDLES-SKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       211 ~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      ..|+..+|.|.|.+.+|. ..++|.+||+++.... .......+++.|...  ..|.   +...+...|+|.++...
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~--s~l~---v~~~~~~~ytC~V~H~s   88 (99)
T d1uvqa1          17 TLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKI--SYLT---FLPSADEIYDCKVEHWG   88 (99)
T ss_dssp             CTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEE--EEEE---ECCCTTCCEEEEEECTT
T ss_pred             cCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEE--EEEE---EcCCCCCEEEEEEEeCC
Confidence            356778899999544554 4899999999885321 122333444444422  1222   23345568999998764

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.07  E-value=5.8e-06  Score=50.34  Aligned_cols=76  Identities=14%  Similarity=0.107  Sum_probs=48.7

Q ss_pred             CCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128         35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL  114 (292)
Q Consensus        35 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~  114 (292)
                      .+|.+...|. ..+..|++|+|.|... .+...+.|+|+|.......   ...........+.|..+...|+|.|+|...
T Consensus         5 pkPsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~---~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~   79 (99)
T d1nkra2           5 EKPSLSAQPG-PTVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRL---PAGPKVNGTFQADFPLGPATHGGTYRCFGS   79 (99)
T ss_dssp             CCCEEEEESC-SEECTTCEEEEEEEES-SCCSEEEEEETTCSSCEEE---ECEEEETTEEEEEEEEEECCSCEEEEEEEE
T ss_pred             CCCEEEEeCC-CcccCCCeEEEEECCC-CCccEEEEEECCCccccEE---EccccCCccEEEEEeccccccCEEEEEEee
Confidence            3566666664 4688999999999764 3455789999875331100   000111112346777788889999999875


Q ss_pred             e
Q psy15128        115 S  115 (292)
Q Consensus       115 ~  115 (292)
                      .
T Consensus        80 ~   80 (99)
T d1nkra2          80 F   80 (99)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.07  E-value=7.9e-06  Score=51.06  Aligned_cols=73  Identities=18%  Similarity=0.381  Sum_probs=46.2

Q ss_pred             CCccEEecCCcEEEEEEEeeeC--CCeeEEEECC--eEE--eec-----cCCCcceeEEee-----ecEEEEccCCCCCC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSP--LPSVFWTQEG--SQV--LMF-----PGNAYGHLHVTQ-----EGTLRIQGVQKEDA  106 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~--~~~-----~~~~~~~~~~~~-----~~~l~i~~~~~~d~  106 (292)
                      |..+.+.+|++++|.|...+..  ...+.|+|..  ...  ...     ......+.....     ...|.|.+++.+|+
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   86 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDE   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccC
Confidence            4456788999999999886532  3358999842  111  000     011112222221     23799999999999


Q ss_pred             eEEEEEEEe
Q psy15128        107 GFFVCSALS  115 (292)
Q Consensus       107 g~Y~C~~~~  115 (292)
                      |.|.|....
T Consensus        87 a~YyCA~~~   95 (111)
T d1cd0a_          87 ADYYCQSYD   95 (111)
T ss_dssp             EEEEEEEEE
T ss_pred             cEEEEeecc
Confidence            999997643

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.07  E-value=9.1e-06  Score=51.39  Aligned_cols=73  Identities=15%  Similarity=0.274  Sum_probs=46.1

Q ss_pred             CCCccEEecCCcEEEEEEEeee--CCCeeEEEECC-----eEEeec-cC-------CCcceeEEeee-----cEEEEccC
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGS--PLPSVFWTQEG-----SQVLMF-PG-------NAYGHLHVTQE-----GTLRIQGV  101 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~-----~~~~~~-~~-------~~~~~~~~~~~-----~~l~i~~~  101 (292)
                      .+..+...+|++++|.|.+.+.  ....+.|||..     .-+... ..       ....+.....+     ..|.|.++
T Consensus         7 ~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l   86 (120)
T d1ypzf1           7 PEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSL   86 (120)
T ss_dssp             SCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSC
T ss_pred             CCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccccc
Confidence            3345667789999999988653  23468999832     111111 11       11223333321     25999999


Q ss_pred             CCCCCeEEEEEEE
Q psy15128        102 QKEDAGFFVCSAL  114 (292)
Q Consensus       102 ~~~d~g~Y~C~~~  114 (292)
                      +.+|+|.|.|...
T Consensus        87 ~~~Dsa~YyCA~~   99 (120)
T d1ypzf1          87 EEEDEAIYYCSYG   99 (120)
T ss_dssp             CGGGCSEEEEEEC
T ss_pred             ccccceeEEEEEc
Confidence            9999999999764

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.07  E-value=2e-06  Score=52.35  Aligned_cols=70  Identities=19%  Similarity=0.123  Sum_probs=41.1

Q ss_pred             CCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCC-CceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        212 SGETALLECGPPKGQPEP-TLHWKKNGQFIDLES-SKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      .++..+|.|.|...+|.. .++|++||..+.... .......+++.|...     ....+...+...|+|.++...-
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~-----s~l~~~~~~~~~ytC~V~H~sl   88 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTL-----VMLETVPRSGEVYTCQVEHPSV   88 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEE-----EEEECCCCTTCEEEEEEECTTC
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEE-----EEeeEcCCCCCEEEEEEEECCC
Confidence            456678999995445654 999999999885321 111233444444322     1223345667799999987643

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.07  E-value=9.8e-07  Score=53.59  Aligned_cols=76  Identities=20%  Similarity=0.303  Sum_probs=47.1

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeE--cCeEec------cC----CCceEEecCCCcccccccccccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKK--NGQFID------LE----SSKRVSILGDPWFDSRRSRSIFGSVLGALSD  274 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~--~g~~~~------~~----~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~  274 (292)
                      .+.|.+|++|+|+|.. .. ....+.|++  .|+.+.      ..    ...++....+   .......|.|..+..+|+
T Consensus         2 slsV~eG~~vtL~C~~-~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~~~~~Ds   76 (96)
T d1ymmd1           2 ALSIQEGENATMNCSY-KT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLD---TSKKSSSLLITASRAADT   76 (96)
T ss_dssp             CCCCSSCCCCCBCCBC-SS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCB---GGGTBCCBCCSSCCSTTC
T ss_pred             CceECCCCCEEEEEEE-eC-CcccEEEEEECCCCCccccccccceecccccccceeecc---CcceecccCcCCCCcccC
Confidence            3568899999999986 33 345799998  232211      00    0011111100   112234689999999999


Q ss_pred             ceeEEEEeecccc
Q psy15128        275 DQWKLIAKNIRNQ  287 (292)
Q Consensus       275 g~y~C~a~n~~g~  287 (292)
                      |.|.|.+....|.
T Consensus        77 a~YyCA~~~~~g~   89 (96)
T d1ymmd1          77 ASYFCATDTTSGT   89 (96)
T ss_dssp             SCCEEEEEETTSC
T ss_pred             EEEeEeEecCCCC
Confidence            9999998776554

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.06  E-value=9e-06  Score=50.96  Aligned_cols=80  Identities=15%  Similarity=0.177  Sum_probs=47.2

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--Ce-Ee---ccCCCceEEecCCCccc--cccccccccccccccccce
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQ-FI---DLESSKRVSILGDPWFD--SRRSRSIFGSVLGALSDDQ  276 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~-~~---~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~~~g~  276 (292)
                      |..+.+.+|++++|.|.. .. ....+.|++-  |. +.   ...............+.  ......|.|..+..+|+|.
T Consensus         8 P~~~~v~~G~~vtl~C~~-~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   85 (113)
T d1h5ba_           8 PSALSLHEGTDSALRCNF-TT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGT   85 (113)
T ss_dssp             CSEEEEETTCCEEEEEEE-SS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEE
T ss_pred             CCEEEEcCCCCEEEEEEE-ec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEE
Confidence            456788999999999997 33 2347899982  22 11   11111110000000000  1122368899999999999


Q ss_pred             eEEEEeeccc
Q psy15128        277 WKLIAKNIRN  286 (292)
Q Consensus       277 y~C~a~n~~g  286 (292)
                      |.|.+....|
T Consensus        86 YyCa~~~~~~   95 (113)
T d1h5ba_          86 YFCAAEASSG   95 (113)
T ss_dssp             EEEEEECSSS
T ss_pred             EEEEecCCCC
Confidence            9999876544

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.06  E-value=1.4e-05  Score=48.49  Aligned_cols=69  Identities=16%  Similarity=0.181  Sum_probs=38.6

Q ss_pred             cCCcEEEEEEEeee-CC-CeeEEEECCeEEeeccCCCcceeEEeeec---EEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         50 LNGIASFQCVAEGS-PL-PSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        50 ~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      .++..+|.|.+.++ |. ..+.|.++|..+....  .........++   .+....+...+...|+|.+.+.....
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~--~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~sl~~   90 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGV--VSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTS   90 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEECCSSE--EECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTTCSS
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEECCEEcCCCC--EECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECCCCC
Confidence            35667899999996 33 3799999987653110  00001111111   22233455677789999999875543

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.06  E-value=5.7e-06  Score=52.21  Aligned_cols=78  Identities=14%  Similarity=0.173  Sum_probs=45.7

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--C---eEeccCCCceEEecCCCccc--ccccccccccccccccccee
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--G---QFIDLESSKRVSILGDPWFD--SRRSRSIFGSVLGALSDDQW  277 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g---~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y  277 (292)
                      |....+.+|++++|.|.. ...-...+.|++.  |   +.|.........-....+..  ......|.|..+..+|+|.|
T Consensus         8 P~sv~~~~G~svtl~C~~-s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavY   86 (119)
T d1f3rb2           8 PSLLSASVGDRVTLSCKG-SQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATY   86 (119)
T ss_dssp             TSEECCCTTCCEEEEEEC-SSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEE
T ss_pred             CCEEEECCCCCEEEEEEe-CCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEE
Confidence            345678899999999997 5544457899982  2   22211100000000001100  11223699999999999999


Q ss_pred             EEEEee
Q psy15128        278 KLIAKN  283 (292)
Q Consensus       278 ~C~a~n  283 (292)
                      .|.+.+
T Consensus        87 yCa~~~   92 (119)
T d1f3rb2          87 FCYQYN   92 (119)
T ss_dssp             EEEEES
T ss_pred             EeeccC
Confidence            997653

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.05  E-value=9.4e-06  Score=50.78  Aligned_cols=76  Identities=18%  Similarity=0.191  Sum_probs=46.8

Q ss_pred             CcceEEeCCCceEEEeeCCCCC--CCCeEEEeEc--CeE---ecc-------CCCceEEecCCCcccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQ--PEPTLHWKKN--GQF---IDL-------ESSKRVSILGDPWFDSRRSRSIFGSVLG  270 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~--p~~~~~W~~~--g~~---~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~  270 (292)
                      |..+.+.+|++|+|.|....+.  ....+.|++.  |+.   +..       ....++....     ......|.|..++
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~l~   81 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSK-----SGNSASLTISGLQ   81 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-----ETTEEEEEECSCC
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEEC-----CCCEeeEEeCcCc
Confidence            4567889999999999973332  2345899982  221   110       0111111111     1223468899999


Q ss_pred             ccccceeEEEEeecc
Q psy15128        271 ALSDDQWKLIAKNIR  285 (292)
Q Consensus       271 ~~~~g~y~C~a~n~~  285 (292)
                      .+|+|.|.|.+.+..
T Consensus        82 ~~Dsa~YyCa~~~~~   96 (112)
T d1lgva1          82 AEDEADYYCSSYDGS   96 (112)
T ss_dssp             GGGCEEEEEEEECSS
T ss_pred             cccCEEEEEeeecCC
Confidence            999999999886543

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.05  E-value=1.6e-05  Score=49.63  Aligned_cols=77  Identities=16%  Similarity=0.274  Sum_probs=45.6

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--CeE---ec-cCCCceEEecC--CCcccc----cccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQF---ID-LESSKRVSILG--DPWFDS----RRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~---~~-~~~~~~~~~~~--~~~~~~----~~~~~l~i~~~~~~  272 (292)
                      |....+.+|++++|.|....+  ...+.|++-  |+.   |. ..........+  .+.+..    .....|.|..+..+
T Consensus         6 P~~~~~~~G~svtl~C~~~~~--~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~   83 (111)
T d2esve1           6 PSHSVIEKGQTVTLRCDPISG--HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELE   83 (111)
T ss_dssp             CSEEEEETTCCEEEEEECCTT--CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGG
T ss_pred             CCEEEECCCCCEEEEEEECCC--CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccC
Confidence            456788999999999986333  357999982  221   10 11111111100  111111    12246999999999


Q ss_pred             ccceeEEEEee
Q psy15128        273 SDDQWKLIAKN  283 (292)
Q Consensus       273 ~~g~y~C~a~n  283 (292)
                      |+|.|.|.+..
T Consensus        84 Dsa~YyCa~~~   94 (111)
T d2esve1          84 DSGVYFCASSQ   94 (111)
T ss_dssp             GCEEEEEEEES
T ss_pred             CCceEEEeeeC
Confidence            99999998753

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.05  E-value=5.8e-05  Score=46.61  Aligned_cols=72  Identities=11%  Similarity=0.249  Sum_probs=46.5

Q ss_pred             ccEEecCCcEEEEEEEeee--CCCeeEEEEC--Ce---EEeecc-CCC------cceeEEeee-----cEEEEccCCCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGS--PLPSVFWTQE--GS---QVLMFP-GNA------YGHLHVTQE-----GTLRIQGVQKED  105 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~--~~---~~~~~~-~~~------~~~~~~~~~-----~~l~i~~~~~~d  105 (292)
                      ...+.+|++++|.|...+.  ....+.|+|.  ++   .+.... ...      .+++....+     -.|+|.+++.+|
T Consensus         4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eD   83 (110)
T d1u9ka_           4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTD   83 (110)
T ss_dssp             EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCC
Confidence            3467889999999998753  4456889984  22   111111 111      123333322     159999999999


Q ss_pred             CeEEEEEEEeC
Q psy15128        106 AGFFVCSALSV  116 (292)
Q Consensus       106 ~g~Y~C~~~~~  116 (292)
                      +|.|.|.+...
T Consensus        84 sa~YyCa~~~~   94 (110)
T d1u9ka_          84 SGLYRCVIYHP   94 (110)
T ss_dssp             CEEEEEEEECT
T ss_pred             CEEEEEEEeCC
Confidence            99999987544

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=3.1e-05  Score=47.63  Aligned_cols=76  Identities=9%  Similarity=0.118  Sum_probs=44.1

Q ss_pred             EEecCCcEEEEEEEeee-CC-CeeEEEECCeEEeecc---CCCcceeEEeeecEEEEccCCCC--CCeEEEEEEEeCCcC
Q psy15128         47 KVGLNGIASFQCVAEGS-PL-PSVFWTQEGSQVLMFP---GNAYGHLHVTQEGTLRIQGVQKE--DAGFFVCSALSVAGS  119 (292)
Q Consensus        47 ~~~~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~--d~g~Y~C~~~~~~~~  119 (292)
                      .....+.++|.|.+.|+ |. ..|.|.+++.......   ........+...+.|+|......  ....|+|.+.+..+.
T Consensus        17 ~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~   96 (105)
T d1dn0b2          17 SPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGN   96 (105)
T ss_dssp             ----CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred             ccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCC
Confidence            34456789999999996 43 4799999886543110   01001112233446777766654  235799999987655


Q ss_pred             eeE
Q psy15128        120 TTV  122 (292)
Q Consensus       120 ~~~  122 (292)
                      ...
T Consensus        97 ~~~   99 (105)
T d1dn0b2          97 KEK   99 (105)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=5.6e-06  Score=50.02  Aligned_cols=65  Identities=12%  Similarity=0.132  Sum_probs=44.4

Q ss_pred             eEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        208 TRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      ..+..|++|+|.|.. .......|.|+|+|....   ....  ...      ....+.+..+...|+|+|+|.-...
T Consensus        14 ~~V~~G~~VTL~C~~-~~~~~~~f~L~k~g~~~~---~~~~--~~~------~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2          14 LVLMPGENISLTCSS-AHIPFDRFSLAKEGELSL---PQHQ--SGE------HPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             SEECTTCCCEEEEEC-SSSCCSEEEEEETTCSSC---CSEE--ECS------SSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CccCCCCeEEEEEeC-CCCCceEEEEEECCcccc---eEEc--CCC------cccEEEEeccccccCcEEEEEEEcC
Confidence            468899999999984 334446899999986432   1111  111      1124778899999999999987543

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.04  E-value=2e-05  Score=49.21  Aligned_cols=76  Identities=18%  Similarity=0.319  Sum_probs=48.2

Q ss_pred             EEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEEC--CeEE--eecc---CCC------cceeEE--eeecEEEEccCCC
Q psy15128         39 FVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE--GSQV--LMFP---GNA------YGHLHV--TQEGTLRIQGVQK  103 (292)
Q Consensus        39 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~--~~~~--~~~~---~~~------~~~~~~--~~~~~l~i~~~~~  103 (292)
                      +...|....+.+|++++|.|...+.....+.|||.  ++..  ....   +..      ..+...  ..+..|.|..+..
T Consensus         4 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~   83 (112)
T d1fo0b_           4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANM   83 (112)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESC
T ss_pred             EEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCc
Confidence            34456666778899999999987655567999984  2211  1110   000      111111  1234688999999


Q ss_pred             CCCeEEEEEEE
Q psy15128        104 EDAGFFVCSAL  114 (292)
Q Consensus       104 ~d~g~Y~C~~~  114 (292)
                      +|++.|.|...
T Consensus        84 ~dsa~Y~Ca~~   94 (112)
T d1fo0b_          84 SQGRTLYCTCS   94 (112)
T ss_dssp             CSCEEEEEEEE
T ss_pred             cCCccEEEEEe
Confidence            99999999864

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.04  E-value=1.6e-05  Score=49.84  Aligned_cols=78  Identities=18%  Similarity=0.236  Sum_probs=46.7

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeE--cCeEec-----cCCCceEEecCCCcc-c---cccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKK--NGQFID-----LESSKRVSILGDPWF-D---SRRSRSIFGSVLGALS  273 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~--~g~~~~-----~~~~~~~~~~~~~~~-~---~~~~~~l~i~~~~~~~  273 (292)
                      |....+.+|++++|.|....+.  ..+.|++  .|+...     ..............+ .   ......|.|..+..+|
T Consensus         6 P~~~~~~~G~svtl~C~~~~~~--~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (113)
T d2ntsp1           6 PRYLIKTRGQQVTLSCSPISGH--RSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGD   83 (113)
T ss_dssp             CSEEEEETTCCEEEEEECSTTC--CEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGG
T ss_pred             CCeEEECCCCCEEEEEEECCCC--CEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCccc
Confidence            3457789999999999964433  4789998  232211     011111111111111 1   0123468999999999


Q ss_pred             cceeEEEEeec
Q psy15128        274 DDQWKLIAKNI  284 (292)
Q Consensus       274 ~g~y~C~a~n~  284 (292)
                      +|.|.|.+...
T Consensus        84 sa~YyCA~~~~   94 (113)
T d2ntsp1          84 SALYLCASSLA   94 (113)
T ss_dssp             CEEEEEEEESS
T ss_pred             ceeeeeeeeCC
Confidence            99999988643

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=7.9e-06  Score=50.82  Aligned_cols=76  Identities=13%  Similarity=0.122  Sum_probs=45.1

Q ss_pred             cceEEeCCCceEEEeeCCCCCC-CCeEEEeEc--CeE---e-ccC------CCceEEecCCCcccccccccccccccccc
Q psy15128        206 KDTRVASGETALLECGPPKGQP-EPTLHWKKN--GQF---I-DLE------SSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~--g~~---~-~~~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                      +.+.+.+|++++|.|....... ...+.|++.  +..   | ...      ...+..+..+   .......|.|..++.+
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~l~~~   80 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDD---PDAGFFTVTMTDLREE   80 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEE---TTTTEEEEEECSCCGG
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeee---CCCCEEEEEEhhhCCC
Confidence            4567889999999998632322 235779872  221   1 000      0111111111   0122346889999999


Q ss_pred             ccceeEEEEeec
Q psy15128        273 SDDQWKLIAKNI  284 (292)
Q Consensus       273 ~~g~y~C~a~n~  284 (292)
                      |+|.|.|.+...
T Consensus        81 DsG~Y~C~v~~~   92 (108)
T d1hkfa_          81 DSGHYWCRIYRP   92 (108)
T ss_dssp             GCEEEEEEEECT
T ss_pred             CCEEEEEEEecC
Confidence            999999987643

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.03  E-value=5.7e-06  Score=51.83  Aligned_cols=74  Identities=12%  Similarity=0.271  Sum_probs=46.1

Q ss_pred             CCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--e--EEee-c-cC------CCcceeEE----eeecEEEEccCCCCC
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--S--QVLM-F-PG------NAYGHLHV----TQEGTLRIQGVQKED  105 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~--~~~~-~-~~------~~~~~~~~----~~~~~l~i~~~~~~d  105 (292)
                      .|....+.+|++++|.|.... ....+.|||..  .  .+.. . ..      ........    .....|.|.++.++|
T Consensus         4 sP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   82 (112)
T d2cdeb1           4 TPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSH   82 (112)
T ss_dssp             ECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTT
T ss_pred             CCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccc
Confidence            455667889999999998743 34579999842  1  1110 0 00      01111111    112369999999999


Q ss_pred             CeEEEEEEEeC
Q psy15128        106 AGFFVCSALSV  116 (292)
Q Consensus       106 ~g~Y~C~~~~~  116 (292)
                      +|.|.|.+...
T Consensus        83 sa~YyCA~~~~   93 (112)
T d2cdeb1          83 TSQYLCASSEN   93 (112)
T ss_dssp             CSEEEEEEECS
T ss_pred             cccEEEEEecC
Confidence            99999987643

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=5.8e-06  Score=50.00  Aligned_cols=75  Identities=13%  Similarity=0.201  Sum_probs=49.8

Q ss_pred             CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      +|.+...|. ..+..|++|+|.|... .+...+.++|++........   ..........+.|.+++..|+|.|+|....
T Consensus         4 kP~Lsa~Ps-~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~---~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1           4 KPTLWAEPG-SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITR---IPQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHT---SCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEeECC-CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEE---ccCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            455656664 4578999999999863 34557888888753211000   000111245899999999999999998753

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.01  E-value=2.1e-05  Score=49.17  Aligned_cols=76  Identities=17%  Similarity=0.354  Sum_probs=44.7

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--Ce---Ee-ccCCCceEEec---CCCccc---ccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQ---FI-DLESSKRVSIL---GDPWFD---SRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~---~~-~~~~~~~~~~~---~~~~~~---~~~~~~l~i~~~~~~  272 (292)
                      |....+.+|++++|.|....+  ...+.|++-  |+   .+ ...........   .+.+..   ......|.|..+.++
T Consensus         6 P~~~~~~~G~svtl~C~~~~~--~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (112)
T d1kgce1           6 PRYKVAKRGQDVALRCDPISG--HVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQE   83 (112)
T ss_dssp             CSEEEEETTCCEEEEEECCTT--CCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGG
T ss_pred             CCeEEECCCCCEEEEEEECCC--CCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcC
Confidence            456678999999999986333  357999982  22   11 10011111000   000101   012246889999999


Q ss_pred             ccceeEEEEe
Q psy15128        273 SDDQWKLIAK  282 (292)
Q Consensus       273 ~~g~y~C~a~  282 (292)
                      |+|.|.|.+.
T Consensus        84 Dsa~YyCa~~   93 (112)
T d1kgce1          84 DSAVYLCASS   93 (112)
T ss_dssp             GCEEEEEEEE
T ss_pred             CCEEEEEeee
Confidence            9999999875

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.01  E-value=1.4e-05  Score=49.96  Aligned_cols=73  Identities=19%  Similarity=0.211  Sum_probs=45.6

Q ss_pred             cceEEeCCCceEEEeeCCCCC-CCCeEEEeEc--CeE---ecc-------CCCceEEecCCCcccccccccccccccccc
Q psy15128        206 KDTRVASGETALLECGPPKGQ-PEPTLHWKKN--GQF---IDL-------ESSKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~--g~~---~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                      +.+.+.+|++++|.|.+.... ....+.|++.  |+.   |..       ....++....     ......|.|..+..+
T Consensus         8 ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~v~~~   82 (114)
T d2rhea_           8 PSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASK-----SGTSASLAISGLESE   82 (114)
T ss_dssp             SEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEE-----ETTEEEEEESSCCGG
T ss_pred             CcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecC-----CCCeeeeEecccCcc
Confidence            457889999999999873322 3457889982  211   110       0111111111     122346899999999


Q ss_pred             ccceeEEEEee
Q psy15128        273 SDDQWKLIAKN  283 (292)
Q Consensus       273 ~~g~y~C~a~n  283 (292)
                      |++.|.|.+..
T Consensus        83 DsA~YyCA~~~   93 (114)
T d2rhea_          83 DEADYYCAAWN   93 (114)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCceEEEeecC
Confidence            99999998763

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.00  E-value=8.5e-06  Score=50.58  Aligned_cols=73  Identities=12%  Similarity=0.053  Sum_probs=45.3

Q ss_pred             cceEEeCCCceEEEeeCCCCCCC--CeEEEeE--cCeEe---cc-------CCCceEEecCCCccccccccccccccccc
Q psy15128        206 KDTRVASGETALLECGPPKGQPE--PTLHWKK--NGQFI---DL-------ESSKRVSILGDPWFDSRRSRSIFGSVLGA  271 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~--~g~~~---~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  271 (292)
                      +...+.+|++++|.|....+...  -.+.|++  .|+..   ..       ....++.....     .....|.|..+..
T Consensus         8 ~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~-----~~~~~L~I~~~~~   82 (110)
T d1oaql_           8 SALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLI-----GNKAALTITGAQT   82 (110)
T ss_dssp             SEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEE-----TTEEEEEEESCCG
T ss_pred             CCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeeccc-----ccceeeecCCCCc
Confidence            35678999999999987434332  2488998  22221   10       11112221111     2234688999999


Q ss_pred             cccceeEEEEee
Q psy15128        272 LSDDQWKLIAKN  283 (292)
Q Consensus       272 ~~~g~y~C~a~n  283 (292)
                      +|+|.|.|.+..
T Consensus        83 ~Dsa~YyCa~~~   94 (110)
T d1oaql_          83 EDEAIYFCALWY   94 (110)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             cccEeEEEEccc
Confidence            999999998764

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.00  E-value=1.8e-05  Score=49.64  Aligned_cols=78  Identities=12%  Similarity=0.155  Sum_probs=46.5

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--CeEe---c-cCCCceEEe--cCCCcc---ccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQFI---D-LESSKRVSI--LGDPWF---DSRRSRSIFGSVLGALS  273 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~~---~-~~~~~~~~~--~~~~~~---~~~~~~~l~i~~~~~~~  273 (292)
                      |....+.+|++|+|.|....  ....+.|++.  |+.+   . .........  ......   .......|.|..+..+|
T Consensus         6 P~~~~~~~G~svtl~C~~s~--~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (114)
T d1ogae1           6 PKYLFRKEGQNVTLSCEQNL--NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNP   83 (114)
T ss_dssp             CSEEEEETTCCEEECCEECS--CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCC
T ss_pred             CCeEEEcCCCCEEEEEEEec--CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCC
Confidence            45678899999999999733  3457999982  2211   0 001111000  011110   01223469999999999


Q ss_pred             cceeEEEEeec
Q psy15128        274 DDQWKLIAKNI  284 (292)
Q Consensus       274 ~g~y~C~a~n~  284 (292)
                      +|.|.|.+...
T Consensus        84 Sa~YyCa~~~~   94 (114)
T d1ogae1          84 TAFYLCASSSR   94 (114)
T ss_dssp             CEEEEEEEESS
T ss_pred             ceeEEEeeccC
Confidence            99999977643

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.3e-05  Score=51.06  Aligned_cols=76  Identities=14%  Similarity=0.218  Sum_probs=45.8

Q ss_pred             CcceEEeCCCceEEEeeCCC---C---CCCCeEEEeEcCeEe------cc-CC--------CceEEecCCCccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPK---G---QPEPTLHWKKNGQFI------DL-ES--------SKRVSILGDPWFDSRRSRS  263 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~---~---~p~~~~~W~~~g~~~------~~-~~--------~~~~~~~~~~~~~~~~~~~  263 (292)
                      +..+++.+|++|.|.|....   +   .....+.|++.+..-      .. ..        ..++.+..+.   ......
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~s   84 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDP---QTKNCT   84 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCG---GGTBCC
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeC---cCCEEE
Confidence            35678999999999998521   1   112357898853211      00 00        1122222211   123447


Q ss_pred             cccccccccccceeEEEEee
Q psy15128        264 IFGSVLGALSDDQWKLIAKN  283 (292)
Q Consensus       264 l~i~~~~~~~~g~y~C~a~n  283 (292)
                      |.|..++..|+|.|.|.+..
T Consensus        85 L~I~~v~~~DsG~Y~C~v~~  104 (121)
T d2g5ra1          85 LSIRDARMSDAGRYFFRMEK  104 (121)
T ss_dssp             EEECSCCGGGCEEEEEEEEE
T ss_pred             EEECCCChHHCEEEEEEEEe
Confidence            99999999999999999964

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.99  E-value=1.3e-05  Score=48.40  Aligned_cols=68  Identities=16%  Similarity=0.219  Sum_probs=41.6

Q ss_pred             CCceEEEeeCCCCCCCCeEEEeEc--Ce---Eec-cCCCceEEecCCCccc-----cccccccccccccccccceeEEEE
Q psy15128        213 GETALLECGPPKGQPEPTLHWKKN--GQ---FID-LESSKRVSILGDPWFD-----SRRSRSIFGSVLGALSDDQWKLIA  281 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~~~~W~~~--g~---~~~-~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~~~g~y~C~a  281 (292)
                      |+.|+|.|.. .......+.|++.  |+   .|. ......  .. ++.+.     ......|.|..+..+|+|.|.|.+
T Consensus         1 G~~vtl~C~~-~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~--~~-~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~   76 (94)
T d2gj6d1           1 GAIASLNCTY-SDRGSQSFFWYRQYSGKSPELIMSIYSNGD--KE-DGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAV   76 (94)
T ss_dssp             TSCEEEEEEE-CCTTCCEEEEEEECTTSCCEEEEEECSSEE--EE-ETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CccEEEEEEE-ccccCCcEEEEEECCCcccccceeeeeecc--CC-CCcEEEEecCCCCEEeEEeeccccCcCccceeeE
Confidence            7899999996 5556668999982  21   111 011110  00 11111     122346999999999999999988


Q ss_pred             eec
Q psy15128        282 KNI  284 (292)
Q Consensus       282 ~n~  284 (292)
                      ...
T Consensus        77 ~~~   79 (94)
T d2gj6d1          77 TTD   79 (94)
T ss_dssp             ESS
T ss_pred             ecC
Confidence            643

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.99  E-value=7.8e-06  Score=50.98  Aligned_cols=78  Identities=9%  Similarity=0.086  Sum_probs=46.1

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--CeE---eccCCCceEEecCCCcc----ccccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQF---IDLESSKRVSILGDPWF----DSRRSRSIFGSVLGALSDD  275 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~---~~~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~~~g  275 (292)
                      +..+.+.+|++|+|.|.. .......+.|++-  |+.   |..............+.    .......|.|..+..+|+|
T Consensus         7 p~~~~~~~G~~vtl~C~~-~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa   85 (110)
T d1ac6a_           7 EGQVALSEEDFLTIHCNY-SASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSA   85 (110)
T ss_dssp             CSEEEEETTEEEEECEEE-ECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCE
T ss_pred             CCeEEECCCCCEEEEEEe-cCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCc
Confidence            456788999999999985 3334457999982  221   11000000000111110    0122346888899999999


Q ss_pred             eeEEEEee
Q psy15128        276 QWKLIAKN  283 (292)
Q Consensus       276 ~y~C~a~n  283 (292)
                      .|.|.+..
T Consensus        86 ~YyCA~~~   93 (110)
T d1ac6a_          86 VYYCALSG   93 (110)
T ss_dssp             EEEEEEEE
T ss_pred             ccceeecC
Confidence            99998864

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.98  E-value=6.1e-05  Score=45.60  Aligned_cols=69  Identities=13%  Similarity=0.193  Sum_probs=41.7

Q ss_pred             EecCCcEEEEEEEeee-C-CCeeEEEECCeEEeec--cCCC--cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         48 VGLNGIASFQCVAEGS-P-LPSVFWTQEGSQVLMF--PGNA--YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        48 ~~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~--~~~~--~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      ...|+..+|.|.+.|+ | ...|.|.++|..+...  ....  .....+...+.|.+..   ++...|+|++.+....
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~---~~~~~ytC~V~H~sl~   90 (99)
T d1uvqa1          16 VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLP---SADEIYDCKVEHWGLD   90 (99)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECC---CTTCCEEEEEECTTSS
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcC---CCCCEEEEEEEeCCCC
Confidence            3457788999999997 3 3479999999876311  0000  1111122233455554   4456799999986543

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.98  E-value=1.5e-05  Score=49.58  Aligned_cols=74  Identities=18%  Similarity=0.236  Sum_probs=44.7

Q ss_pred             CcceEEeCCCceEEEeeCCCCCC---CCeEEEeEc--CeE---ecc-------CCCceEEecCCCccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQP---EPTLHWKKN--GQF---IDL-------ESSKRVSILGDPWFDSRRSRSIFGSVL  269 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~--g~~---~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~  269 (292)
                      |..+.+.+|++|+|.|.++.+..   ...+.|++.  |+.   +..       ....++.....     .....|.|..+
T Consensus         8 P~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~-----~~~~~L~I~~~   82 (111)
T d2gsia1           8 PASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGS-----GTDFTLNIHPV   82 (111)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEESSC
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecC-----CCchhcccccc
Confidence            45678899999999997533222   234889882  221   110       00111111111     12346899999


Q ss_pred             cccccceeEEEEee
Q psy15128        270 GALSDDQWKLIAKN  283 (292)
Q Consensus       270 ~~~~~g~y~C~a~n  283 (292)
                      ..+|++.|.|.+.+
T Consensus        83 ~~~DsA~YyCa~~~   96 (111)
T d2gsia1          83 EEEDAATYYCSHIR   96 (111)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             cccCCceEEEEECC
Confidence            99999999997653

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.97  E-value=8.7e-06  Score=50.86  Aligned_cols=75  Identities=17%  Similarity=0.201  Sum_probs=45.6

Q ss_pred             CcceEEeCCCceEEEeeCCCCCC--CCeEEEeEc--CeEec---c-------CCCceEEecCCCcccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQP--EPTLHWKKN--GQFID---L-------ESSKRVSILGDPWFDSRRSRSIFGSVLG  270 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--g~~~~---~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~  270 (292)
                      |..+.+.+|++++|.|.+ .+..  ...+.|++.  ++.+.   .       ....+.....+   .......|.|..+.
T Consensus         7 P~s~sv~~G~svtL~C~~-s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~l~   82 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTR-SSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSID---RSSNSASLTISGLK   82 (111)
T ss_dssp             CSEEEECTTSCEEEEEEE-SSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE---TTTTEEEEEECSCC
T ss_pred             CCeeEECCCCCEEEEEEE-CCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeec---CCCCccccccccCC
Confidence            346789999999999987 4432  235899882  22210   0       00111111110   01233478899999


Q ss_pred             ccccceeEEEEee
Q psy15128        271 ALSDDQWKLIAKN  283 (292)
Q Consensus       271 ~~~~g~y~C~a~n  283 (292)
                      .+|++.|.|.+.+
T Consensus        83 ~~Dsa~YyCA~~~   95 (111)
T d1cd0a_          83 TEDEADYYCQSYD   95 (111)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccCcEEEEeecc
Confidence            9999999998754

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.96  E-value=3.5e-05  Score=46.54  Aligned_cols=69  Identities=13%  Similarity=0.142  Sum_probs=38.2

Q ss_pred             ecCCcEEEEEEEeee-C-CCeeEEEECCeEEeecc--C--CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         49 GLNGIASFQCVAEGS-P-LPSVFWTQEGSQVLMFP--G--NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        49 ~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~--~--~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      ..++..+|.|.+.|+ | ...+.|.++|..+....  .  .......+...+.|.   +...+...|+|.+.+.....
T Consensus        14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~---v~~~~~~~ytC~V~H~sl~~   88 (97)
T d1uvqb1          14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLE---MTPQRGDVYTCHVEHPSLQS   88 (97)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEE---CCSCTTCCEEEEEECTTCSS
T ss_pred             cCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEec---cCCCCCCEEEEEEEeCCCCC
Confidence            346677999999996 3 34799999987653110  0  000111122222344   35566778999999875543

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.96  E-value=3.9e-07  Score=55.40  Aligned_cols=72  Identities=18%  Similarity=0.386  Sum_probs=44.8

Q ss_pred             cEEecCCcEEEEEEEeeeCCCeeEEEEC--CeEEe----ec---cCCCcceeEEee-----ecEEEEccCCCCCCeEEEE
Q psy15128         46 QKVGLNGIASFQCVAEGSPLPSVFWTQE--GSQVL----MF---PGNAYGHLHVTQ-----EGTLRIQGVQKEDAGFFVC  111 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~--~~~~~----~~---~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~Y~C  111 (292)
                      +.|.+|++++|.|.... ....+.|||.  ++...    ..   ......+.....     ...|.|.+++++|+|.|.|
T Consensus         3 lsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   81 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC   81 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEE
T ss_pred             ceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeE
Confidence            45778999999998754 3347999983  22110    00   011112222211     2369999999999999999


Q ss_pred             EEEeCCc
Q psy15128        112 SALSVAG  118 (292)
Q Consensus       112 ~~~~~~~  118 (292)
                      .+....+
T Consensus        82 A~~~~~g   88 (96)
T d1ymmd1          82 ATDTTSG   88 (96)
T ss_dssp             EEEETTS
T ss_pred             eEecCCC
Confidence            8765444

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.96  E-value=2.3e-05  Score=48.75  Aligned_cols=77  Identities=14%  Similarity=0.240  Sum_probs=46.1

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeE--cCe-E--e-cc-CCCceEEe-cCCCccc---cccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKK--NGQ-F--I-DL-ESSKRVSI-LGDPWFD---SRRSRSIFGSVLGALS  273 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~--~g~-~--~-~~-~~~~~~~~-~~~~~~~---~~~~~~l~i~~~~~~~  273 (292)
                      |....+.+|++++|.|....+  ...+.|++  .|+ +  + .. ..+..... ..+.+..   ......|.|..+..+|
T Consensus         8 P~~~~~~~G~~vtl~C~~s~~--~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   85 (110)
T d2aq2a1           8 PRNKVAVTGEKVTLSCQQTNN--HNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQ   85 (110)
T ss_dssp             CSEEEECTTCCEEEEEEESSC--CSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGG
T ss_pred             CCeEEEcCCCCEEEEEEECCC--cCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhh
Confidence            456778999999999986333  35799998  222 1  1 11 11111111 1111111   1223468899999999


Q ss_pred             cceeEEEEee
Q psy15128        274 DDQWKLIAKN  283 (292)
Q Consensus       274 ~g~y~C~a~n  283 (292)
                      +|.|.|.+..
T Consensus        86 sa~YyCa~~~   95 (110)
T d2aq2a1          86 TSVYFCASGG   95 (110)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEeeCC
Confidence            9999998764

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2.7e-06  Score=52.33  Aligned_cols=72  Identities=13%  Similarity=0.018  Sum_probs=43.9

Q ss_pred             CCceEEEeeCCCCCCC-CeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        213 GETALLECGPPKGQPE-PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      ++.++|.|.|.+.+|. ..|+|.+||+..............++.|...  ..|.+..-.......|+|.|+...-
T Consensus        19 ~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~--S~L~v~~~~w~~g~~ytC~V~H~~l   91 (102)
T d1l6xa2          19 KNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLY--SKLTVDKSRWQQGNVFSCSVMHEAL   91 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEE--EEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEE--EEEEECHHHcCCCCEEEEEEEeCCC
Confidence            5678999999544564 4999999999874322223333445544422  2344443333334489999998643

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=8.7e-06  Score=49.97  Aligned_cols=69  Identities=17%  Similarity=0.254  Sum_probs=44.0

Q ss_pred             cCCcEEEEEEEeee-CC-CeeEEEECCeEEeeccC---CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128         50 LNGIASFQCVAEGS-PL-PSVFWTQEGSQVLMFPG---NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG  118 (292)
Q Consensus        50 ~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~  118 (292)
                      .++.++|.|.+.++ |. ..+.|.+++........   .......+...+.|.|..-.......|+|.+.+...
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~l   91 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL   91 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCCC
Confidence            46789999999996 43 48999999876431110   001111233344677776665666689999998654

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.95  E-value=1.7e-05  Score=48.60  Aligned_cols=72  Identities=13%  Similarity=0.168  Sum_probs=41.2

Q ss_pred             ecCCcEEEEEEEeee-C-CCeeEEEECCeEEeeccC-CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCee
Q psy15128         49 GLNGIASFQCVAEGS-P-LPSVFWTQEGSQVLMFPG-NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT  121 (292)
Q Consensus        49 ~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~  121 (292)
                      ..++.++|.|.+.|+ | ...|.|.+++........ .......+...+.|.|...... .+.|+|.+.+......
T Consensus        18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~   92 (102)
T d1mjuh2          18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWP-SQSITCNVAHPASSTK   92 (102)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTT-TSCCEEEEEEGGGTEE
T ss_pred             cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehhHcC-CceEEEEEEECCCCEE
Confidence            357889999999996 3 337999776632211110 0011112333456888777764 4689999998765443

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.95  E-value=3.6e-05  Score=45.84  Aligned_cols=67  Identities=13%  Similarity=0.141  Sum_probs=39.8

Q ss_pred             CCcEEEEEEEeee-CC-CeeEEEECCeEEeeccCC--CcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         51 NGIASFQCVAEGS-PL-PSVFWTQEGSQVLMFPGN--AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        51 g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      ++.++|.|.+.|+ |. ..++|.++|..+......  ......+...+.|.+.   ..+...|+|++.+.....
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~---~~~~~~ytC~V~H~sL~~   85 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVK---RGDEHHYQCQVEHEGLAQ   85 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEE---TTCGGGEEEEEECTTSSS
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEEC---CCCCCEEEEEEEeCCCCC
Confidence            4578999999996 43 379999998764211000  0011112223345554   345568999999875543

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.95  E-value=2.1e-05  Score=49.08  Aligned_cols=72  Identities=19%  Similarity=0.206  Sum_probs=44.0

Q ss_pred             CcceEEeCCCceEEEeeCCCCC----CCCeEEEeEc--CeE---ecc-------CCCceEEecCCCcccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQ----PEPTLHWKKN--GQF---IDL-------ESSKRVSILGDPWFDSRRSRSIFGSV  268 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~----p~~~~~W~~~--g~~---~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~  268 (292)
                      |+.+.+.+|++|+|.|.+..+.    ....+.|++.  |+.   +..       ....++.....     .....|.|..
T Consensus         8 p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s-----~~~~~L~Is~   82 (112)
T d1mjul1           8 APSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGS-----GTAFTLRISR   82 (112)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEC-----SSEEEEEESS
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecC-----CCEEEEEECC
Confidence            4567889999999999863321    2346899872  221   110       01111111111     2234689999


Q ss_pred             ccccccceeEEEE
Q psy15128        269 LGALSDDQWKLIA  281 (292)
Q Consensus       269 ~~~~~~g~y~C~a  281 (292)
                      +..+|++.|.|..
T Consensus        83 ~~~~DsAvYyCa~   95 (112)
T d1mjul1          83 VEAEDVGVYYCLQ   95 (112)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             ccccCCceEEEEe
Confidence            9999999999954

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.4e-05  Score=49.86  Aligned_cols=78  Identities=14%  Similarity=0.111  Sum_probs=41.9

Q ss_pred             ceEEeCCCceEEEeeCCCCC--CCCe--EEEeEcCe-Eec-cCCCceEEecCCCccc-----cccccccccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQ--PEPT--LHWKKNGQ-FID-LESSKRVSILGDPWFD-----SRRSRSIFGSVLGALSDD  275 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~--p~~~--~~W~~~g~-~~~-~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~~~g  275 (292)
                      .+.+..|++++|.|......  +...  +.|.++.. .+. ...+..........+.     .....+|.|..++.+|+|
T Consensus         3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G   82 (110)
T d1ncna_           3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKG   82 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCE
T ss_pred             EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCE
Confidence            45778999999999863221  1122  34444332 211 0011100000001111     122346999999999999


Q ss_pred             eeEEEEeec
Q psy15128        276 QWKLIAKNI  284 (292)
Q Consensus       276 ~y~C~a~n~  284 (292)
                      .|.|.+...
T Consensus        83 ~Y~C~V~~~   91 (110)
T d1ncna_          83 LYQCIIHHK   91 (110)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEec
Confidence            999998644

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.94  E-value=9e-06  Score=50.90  Aligned_cols=73  Identities=18%  Similarity=0.226  Sum_probs=44.6

Q ss_pred             CcceEEeCCCceEEEeeCCCCC-----CCCeEEEeEc--CeE---ec-------cCCCceEEecCCCccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQ-----PEPTLHWKKN--GQF---ID-------LESSKRVSILGDPWFDSRRSRSIFGS  267 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~-----p~~~~~W~~~--g~~---~~-------~~~~~~~~~~~~~~~~~~~~~~l~i~  267 (292)
                      |....+.+|++++|.|.+....     ....+.|++.  |+.   +.       .....++....     ......|.|.
T Consensus         8 P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~-----s~~~~~L~I~   82 (113)
T d1q9ra1           8 PSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSG-----SGTDFTLTIT   82 (113)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEES
T ss_pred             CCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeC-----CCCeEeEEec
Confidence            4567889999999999763221     1235899982  221   11       01111111111     1223469999


Q ss_pred             cccccccceeEEEEe
Q psy15128        268 VLGALSDDQWKLIAK  282 (292)
Q Consensus       268 ~~~~~~~g~y~C~a~  282 (292)
                      .+..+|+|.|.|.+.
T Consensus        83 ~l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          83 SVQAEDLAVYYCKQS   97 (113)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ccccCCCeEEEeccc
Confidence            999999999999865

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=3.9e-06  Score=51.55  Aligned_cols=73  Identities=14%  Similarity=0.113  Sum_probs=44.5

Q ss_pred             CCceEEEeeCCCCCCC-CeEEEeEcCeEeccCCC-ceEEecCCCccccccccccccccccccccceeEEEEeecccc
Q psy15128        213 GETALLECGPPKGQPE-PTLHWKKNGQFIDLESS-KRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQ  287 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~  287 (292)
                      +..++|.|.+.+.+|. ..|.|.+||+.+..... .......++.|..  ...|.+..-.......|+|.|......
T Consensus        20 ~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~--~S~L~v~~~~w~~~~~ytC~V~H~~~~   94 (102)
T d1q0xl2          20 TAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMA--SSYLTLTARAWERHSSYSCQVTHEGHS   94 (102)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEE--EEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred             CCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEE--EEEEEECHHHhCCCCEEEEEEEECCcc
Confidence            5678999999555554 48999999998752211 1122334444432  224445444444566999999986543

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.94  E-value=3e-05  Score=48.40  Aligned_cols=77  Identities=9%  Similarity=0.097  Sum_probs=45.5

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeE--cCeEec-----cCCCceEEec-CCCccc---cccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKK--NGQFID-----LESSKRVSIL-GDPWFD---SRRSRSIFGSVLGALS  273 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~--~g~~~~-----~~~~~~~~~~-~~~~~~---~~~~~~l~i~~~~~~~  273 (292)
                      |....+.+|++++|.|....+  ...+.|++  .|+.+.     ........-. ......   ......|.|..+.++|
T Consensus         6 P~~~~~~~G~svtl~C~~s~~--~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (112)
T d2bnub1           6 PKFQVLKTGQSMTLQCAQDMN--HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQ   83 (112)
T ss_dssp             CSEEEEETTCCEEEEEEESSC--CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGG
T ss_pred             CCeEEECCCCCEEEEEEEECC--ccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHH
Confidence            345678999999999986433  35799998  232110     0111111100 011111   1122368999999999


Q ss_pred             cceeEEEEee
Q psy15128        274 DDQWKLIAKN  283 (292)
Q Consensus       274 ~g~y~C~a~n  283 (292)
                      +|.|.|.+..
T Consensus        84 savYyCA~~~   93 (112)
T d2bnub1          84 TSVYFCASSY   93 (112)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEeecC
Confidence            9999998753

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=6.6e-06  Score=51.13  Aligned_cols=83  Identities=20%  Similarity=0.319  Sum_probs=51.4

Q ss_pred             CCcEEe-CCCccEEecCCcEEEEEEEeee-CCC-eeEEEECCeEEeeccC--------CCcceeEEeeecEEEEccCCCC
Q psy15128         36 PPSFVV-RPQDQKVGLNGIASFQCVAEGS-PLP-SVFWTQEGSQVLMFPG--------NAYGHLHVTQEGTLRIQGVQKE  104 (292)
Q Consensus        36 ~p~~~~-~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~--------~~~~~~~~~~~~~l~i~~~~~~  104 (292)
                      +|.+.+ .+....+..++.++|.|.+.++ |.. .|.|+++|..+.....        .......+...+.|.|..-...
T Consensus         4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~   83 (108)
T d1ow0a2           4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWK   83 (108)
T ss_dssp             CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHH
T ss_pred             CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhC
Confidence            344443 2333345567889999999986 433 7999999887642110        0111222334456777766666


Q ss_pred             CCeEEEEEEEeCCc
Q psy15128        105 DAGFFVCSALSVAG  118 (292)
Q Consensus       105 d~g~Y~C~~~~~~~  118 (292)
                      ....|+|.+.+...
T Consensus        84 ~g~~ytC~V~H~sl   97 (108)
T d1ow0a2          84 KGDTFSCMVGHEAL   97 (108)
T ss_dssp             HTCCEEEEEECTTC
T ss_pred             CCCEEEEEEEeCCC
Confidence            66789999988653

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=2.6e-06  Score=52.61  Aligned_cols=76  Identities=11%  Similarity=0.138  Sum_probs=43.6

Q ss_pred             CCCceEEEeeCCCCCCC-CeEEEeEcCeEeccCCCceEEecCCCcccccccccccccccccc--ccceeEEEEeeccccc
Q psy15128        212 SGETALLECGPPKGQPE-PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGAL--SDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~--~~g~y~C~a~n~~g~~  288 (292)
                      ..+.+.|.|.|...+|. ..|+|.++|+.+............++.|...  ..|.+..-...  ....|+|.|....+..
T Consensus        20 ~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~--S~L~v~~~eW~~~~~~~ytC~V~H~~~~~   97 (105)
T d1dn0b2          20 DTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAAT--SQVLLPSKDVMAGTDEHVVCKVQHPNGNK   97 (105)
T ss_dssp             -CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEE--EEEEECTTCC---CCCEEEEEEECTTCCE
T ss_pred             CCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEE--EEEEEcHHHhccCCCCEEEEEEEECCCCE
Confidence            35778999999555664 4999999987764222111122233333322  23444433322  2347999999887765


Q ss_pred             c
Q psy15128        289 Q  289 (292)
Q Consensus       289 ~  289 (292)
                      .
T Consensus        98 ~   98 (105)
T d1dn0b2          98 E   98 (105)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.94  E-value=3.4e-05  Score=47.43  Aligned_cols=70  Identities=17%  Similarity=0.379  Sum_probs=46.2

Q ss_pred             ccEEecCCcEEEEEEEeeeCC--CeeEEEEC--CeEEe-----------eccCCCcceeEEeeec-----EEEEccCCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSPL--PSVFWTQE--GSQVL-----------MFPGNAYGHLHVTQEG-----TLRIQGVQKE  104 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~--~~v~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~-----~l~i~~~~~~  104 (292)
                      ...+.+|++++|.|.+.|+..  ..+.|+|.  |+.+.           .......+++....+.     .|.|.+++.+
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~e   88 (116)
T d1a2yb_           9 PGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTD   88 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeec
Confidence            345778999999999988643  35779874  22211           0111223445554432     5999999999


Q ss_pred             CCeEEEEEEE
Q psy15128        105 DAGFFVCSAL  114 (292)
Q Consensus       105 d~g~Y~C~~~  114 (292)
                      |++.|.|...
T Consensus        89 DTAvYYCAr~   98 (116)
T d1a2yb_          89 DTARYYCARE   98 (116)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEEEe
Confidence            9999999753

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.9e-05  Score=47.24  Aligned_cols=63  Identities=13%  Similarity=0.102  Sum_probs=43.9

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK  282 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~  282 (292)
                      ...+..|++|+|.|..  ..+...|.|+|+|....      ......     .....+.|..+...|+|.|+|...
T Consensus        12 ~~~V~~G~~VTL~C~~--~~~~~~f~L~Keg~~~~------~~~~~~-----~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2          12 GPEVISGEKVTFYCRL--DTATSMFLLLKEGRSSH------VQRGYG-----KVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             CSEEETTCEEEEEEEC--SSSCSEEEEEEESSSCE------EEEEEC-----SSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CCcccCCCcEEEEECC--CCCCCEEEEEECCCccc------eeecCC-----CceeEEEecccChhcCceEEEEeE
Confidence            3467899999999984  45567899999875331      111111     112257788999999999999754

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.93  E-value=3.6e-05  Score=47.30  Aligned_cols=70  Identities=21%  Similarity=0.469  Sum_probs=46.8

Q ss_pred             ccEEecCCcEEEEEEEeeeCC--CeeEEEEC--CeEEe-----------eccCCCcceeEEeeec-----EEEEccCCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSPL--PSVFWTQE--GSQVL-----------MFPGNAYGHLHVTQEG-----TLRIQGVQKE  104 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~--~~v~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~-----~l~i~~~~~~  104 (292)
                      ...+.+|++++|.|.+.|...  ..+.|+|.  |+.+.           .......+++....+.     .|.|.+++.+
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~e   88 (117)
T d1c5db1           9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE   88 (117)
T ss_dssp             CSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccC
Confidence            345778999999999988643  36889873  22211           0111223455555432     5999999999


Q ss_pred             CCeEEEEEEE
Q psy15128        105 DAGFFVCSAL  114 (292)
Q Consensus       105 d~g~Y~C~~~  114 (292)
                      |++.|.|...
T Consensus        89 DtAvYYCAr~   98 (117)
T d1c5db1          89 DTAIYFCTRE   98 (117)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEecc
Confidence            9999999643

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.92  E-value=2.2e-05  Score=49.05  Aligned_cols=80  Identities=13%  Similarity=0.157  Sum_probs=47.2

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--CeEe---c--cCCCceEEe-cCCCccc---cccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQFI---D--LESSKRVSI-LGDPWFD---SRRSRSIFGSVLGALS  273 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~~---~--~~~~~~~~~-~~~~~~~---~~~~~~l~i~~~~~~~  273 (292)
                      |....+.+|++++|.|....+.  ..+.|++-  |+.+   .  ........- .......   ......|.|..+..+|
T Consensus         5 P~~~~~~~G~svtL~C~~~~~~--~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   82 (112)
T d2cdeb1           5 PRYLVIGTGKKITLECSQTMGH--DKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSH   82 (112)
T ss_dssp             CSEEEEETTCCBCCEEEETTCC--SEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTT
T ss_pred             CCEEEECCCCCEEEEEEEeCCc--ccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccc
Confidence            4457889999999999964333  57899982  2211   0  011111110 0011110   1223468888999999


Q ss_pred             cceeEEEEeeccc
Q psy15128        274 DDQWKLIAKNIRN  286 (292)
Q Consensus       274 ~g~y~C~a~n~~g  286 (292)
                      +|.|.|.+....|
T Consensus        83 sa~YyCA~~~~~~   95 (112)
T d2cdeb1          83 TSQYLCASSENIG   95 (112)
T ss_dssp             CSEEEEEEECSSS
T ss_pred             cccEEEEEecCCC
Confidence            9999998876544

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.92  E-value=8.6e-06  Score=48.64  Aligned_cols=67  Identities=12%  Similarity=0.127  Sum_probs=42.5

Q ss_pred             CCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        213 GETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      +..++|.|.|.+.+|.. .++|.+||..+.. .........++.|....  .|.+   ...+...|+|.+....
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~-~~~~~~~~~dgty~~~S--~l~v---~~~~~~~ytC~V~H~s   82 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRNGLASGS-GNCSTGPNGDGSFHAWS--LLEV---KRGDEHHYQCQVEHEG   82 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCC-CEEEEEECSSSCEEEEE--EEEE---ETTCGGGEEEEEECTT
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEeCCc-cCccceecCCCCEeEEE--EEEE---CCCCCCEEEEEEEeCC
Confidence            45689999995446654 9999999998752 22333444555544332  2322   3345568999998764

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.92  E-value=7.4e-06  Score=50.75  Aligned_cols=77  Identities=17%  Similarity=0.236  Sum_probs=45.3

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--CeE---eccCCCceEEecCCCcc--cccccccccccccccccccee
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQF---IDLESSKRVSILGDPWF--DSRRSRSIFGSVLGALSDDQW  277 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~---~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~~~g~y  277 (292)
                      |+...+.+|++++|.|.. .......+.|++-  |+.   |......+-.-..+.+.  .......|.|..+..+|+|.|
T Consensus         6 P~s~~~~~G~svtl~C~~-~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Y   84 (108)
T d1nfde1           6 PSSASVTVGETVKITCSG-DQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAY   84 (108)
T ss_dssp             CSEEEEETTSCCCEEEEE-TTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEE
T ss_pred             CCeeEECCCCCEEEEEEC-CCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceE
Confidence            456788999999999986 4434446889882  321   11111100000000000  001234688999999999999


Q ss_pred             EEEEe
Q psy15128        278 KLIAK  282 (292)
Q Consensus       278 ~C~a~  282 (292)
                      .|.+.
T Consensus        85 yCA~~   89 (108)
T d1nfde1          85 YCLSS   89 (108)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            99875

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=1.9e-05  Score=49.86  Aligned_cols=77  Identities=14%  Similarity=0.173  Sum_probs=45.7

Q ss_pred             CcceEEeCCCceEEEeeCCC---C--CCCCeEEEeEcCe----Ee-cc--------CCCceEEecCCCcccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPK---G--QPEPTLHWKKNGQ----FI-DL--------ESSKRVSILGDPWFDSRRSRSIFG  266 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~---~--~p~~~~~W~~~g~----~~-~~--------~~~~~~~~~~~~~~~~~~~~~l~i  266 (292)
                      |..+.+.+|+.|.|.|....   .  .....+.|++.+.    .+ ..        ....+..+..+.   ......|.|
T Consensus         7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~sL~I   83 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNM---DHKVCNLLL   83 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCG---GGTBCCEEE
T ss_pred             CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeC---cCCEEEEEE
Confidence            46788999999999998521   1  1123456776321    11 00        111222222221   123346999


Q ss_pred             ccccccccceeEEEEeec
Q psy15128        267 SVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       267 ~~~~~~~~g~y~C~a~n~  284 (292)
                      ..++..|+|.|.|.+...
T Consensus        84 ~~v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          84 KDLKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             CSCCGGGCEEEEEEEECC
T ss_pred             CCCChhHCEEEEEEEEeC
Confidence            999999999999999654

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.92  E-value=3.3e-05  Score=47.43  Aligned_cols=70  Identities=16%  Similarity=0.365  Sum_probs=46.6

Q ss_pred             ccEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEe----e--------ccCCCcceeEEeeec-----EEEEccCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVL----M--------FPGNAYGHLHVTQEG-----TLRIQGVQK  103 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~----~--------~~~~~~~~~~~~~~~-----~l~i~~~~~  103 (292)
                      ...+.+|+++.|.|.+.|..  ...+.|+|.  ++.+.    +        ......+++.+..+.     .|.+.+++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~   88 (117)
T d1jpth1           9 GGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRA   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCC
Confidence            34577899999999998854  346888874  22111    0        111223555555432     599999999


Q ss_pred             CCCeEEEEEEE
Q psy15128        104 EDAGFFVCSAL  114 (292)
Q Consensus       104 ~d~g~Y~C~~~  114 (292)
                      +|++.|.|...
T Consensus        89 eDTAvYYCAr~   99 (117)
T d1jpth1          89 EDTAVYYCARD   99 (117)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCceEEEEeec
Confidence            99999999643

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.92  E-value=1.6e-05  Score=48.98  Aligned_cols=76  Identities=17%  Similarity=0.156  Sum_probs=43.7

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--Ce---EeccCCCceEEecCCCccc--ccccccccccccccccccee
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQ---FIDLESSKRVSILGDPWFD--SRRSRSIFGSVLGALSDDQW  277 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~---~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y  277 (292)
                      |..+.+.+|++++|.|....+  ...+.|++.  |+   .+.........-....+..  ......|.|..+..+|+|.|
T Consensus         7 P~~l~~~~G~~vtl~C~~s~~--~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (104)
T d1yqvl1           7 PAIMSASPGEKVTMTCSASSS--VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATY   84 (104)
T ss_dssp             SSEEEECTTCCEEEEEEESSC--CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCC--CCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeE
Confidence            456788999999999986332  345789983  11   1100000000000001000  12234699999999999999


Q ss_pred             EEEEe
Q psy15128        278 KLIAK  282 (292)
Q Consensus       278 ~C~a~  282 (292)
                      .|.+.
T Consensus        85 yCa~~   89 (104)
T d1yqvl1          85 YCQQW   89 (104)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            99764

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=2.1e-05  Score=48.03  Aligned_cols=72  Identities=13%  Similarity=0.159  Sum_probs=43.9

Q ss_pred             ecCCcEEEEEEEeee-C-CCeeEEEECCeEEeeccC-CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCee
Q psy15128         49 GLNGIASFQCVAEGS-P-LPSVFWTQEGSQVLMFPG-NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT  121 (292)
Q Consensus        49 ~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~  121 (292)
                      ..++.++|.|.+.++ | ...|.|.+++........ .......+...+.|.|..-... .+.|+|.+.+......
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~   92 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTWP-SASVTCLVAHPKSSTA   92 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTT-TSCCEEEEEEGGGTEE
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhcC-CCeEEEEEEeCCCCee
Confidence            357889999999995 4 347999887643211110 0001112233457888766654 5789999998765543

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=3.8e-06  Score=51.64  Aligned_cols=74  Identities=12%  Similarity=0.071  Sum_probs=44.3

Q ss_pred             CCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCC-ceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128        213 GETALLECGPPKGQPEP-TLHWKKNGQFIDLESS-KRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      ++.++|.|.+.+.+|.. .|.|.+||+.+..... .......++.|...  ..|.+..-.......|+|.+++.....
T Consensus        20 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~--S~L~v~~~~w~~~~~ytC~V~H~~~~~   95 (102)
T d1rzfl2          20 ANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAAS--SYLSLTPEQWKSHRSYSCQVTHEGSTV   95 (102)
T ss_dssp             TTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEE--EEEEECHHHHHHSSCEEEEEEETTEEE
T ss_pred             CCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEE--EEEEECHHHhCCCCEEEEEEEECCccE
Confidence            56789999994445543 8999999998853211 12223344443322  234444333334558999999875443

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.91  E-value=9.2e-06  Score=49.83  Aligned_cols=69  Identities=16%  Similarity=0.210  Sum_probs=43.8

Q ss_pred             cCCcEEEEEEEeee-CC-CeeEEEECCeEEeeccC---CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128         50 LNGIASFQCVAEGS-PL-PSVFWTQEGSQVLMFPG---NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG  118 (292)
Q Consensus        50 ~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~  118 (292)
                      .++.++|.|.+.|+ |. ..|.|.++|........   .......+...+.|.|..-.......|+|.+.+...
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~l   91 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL   91 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCCC
Confidence            46789999999995 43 47999999865321100   001111233345677776665666789999998653

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.91  E-value=5.2e-05  Score=46.91  Aligned_cols=70  Identities=17%  Similarity=0.378  Sum_probs=45.9

Q ss_pred             cEEecCCcEEEEEEEeeeCC--CeeEEEECC--eEEe----ecc-------CCCcceeEEeeec-----EEEEccCCCCC
Q psy15128         46 QKVGLNGIASFQCVAEGSPL--PSVFWTQEG--SQVL----MFP-------GNAYGHLHVTQEG-----TLRIQGVQKED  105 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~~--~~v~W~~~~--~~~~----~~~-------~~~~~~~~~~~~~-----~l~i~~~~~~d  105 (292)
                      ..+.+|++++|.|.+.|+..  ..+.|+|..  +.+.    ...       ....+++....+.     .|.|.+++.+|
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eD   88 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDD   88 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCC
Confidence            45778999999999988643  357798842  2111    000       1112345544332     59999999999


Q ss_pred             CeEEEEEEEe
Q psy15128        106 AGFFVCSALS  115 (292)
Q Consensus       106 ~g~Y~C~~~~  115 (292)
                      ++.|.|....
T Consensus        89 tA~YYCAr~~   98 (119)
T d1kxvc_          89 TAMYYCKPSL   98 (119)
T ss_dssp             CEEEEEEEEE
T ss_pred             cceEeeeecc
Confidence            9999997543

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=1.1e-05  Score=49.43  Aligned_cols=69  Identities=19%  Similarity=0.208  Sum_probs=43.9

Q ss_pred             cCCcEEEEEEEeee-C-CCeeEEEECCeEEeecc---CCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128         50 LNGIASFQCVAEGS-P-LPSVFWTQEGSQVLMFP---GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG  118 (292)
Q Consensus        50 ~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~  118 (292)
                      ..+.++|.|.+.++ | ...|.|.+++..+....   ........+...+.|.|..-.......|+|.+.+...
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~l   90 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL   90 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCC
Confidence            45678999999996 4 34799999987542111   0011112233445677776665667789999988643

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.91  E-value=2.9e-05  Score=48.46  Aligned_cols=74  Identities=20%  Similarity=0.219  Sum_probs=45.0

Q ss_pred             CcceEEeCCCceEEEeeCCCC----CCCCeEEEeEc--Ce---Eecc-------CCCceEEecCCCcccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKG----QPEPTLHWKKN--GQ---FIDL-------ESSKRVSILGDPWFDSRRSRSIFGSV  268 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~----~p~~~~~W~~~--g~---~~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~  268 (292)
                      |....+.+|++|+|.|.....    .....+.|++.  |+   .+..       ....++....     ......|.|..
T Consensus         9 P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~-----~~~~~~L~I~~   83 (113)
T d1n4xl_           9 PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG-----SGTDFTLKISR   83 (113)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----CSSEEEEEESS
T ss_pred             CCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeec-----cCCcccCccCC
Confidence            356788999999999986322    22346899882  21   1110       0111111111     12234799999


Q ss_pred             ccccccceeEEEEee
Q psy15128        269 LGALSDDQWKLIAKN  283 (292)
Q Consensus       269 ~~~~~~g~y~C~a~n  283 (292)
                      +..+|+|.|.|.+.+
T Consensus        84 ~~~~DsavYyCa~~~   98 (113)
T d1n4xl_          84 VEAEDLGIYYCFQGS   98 (113)
T ss_dssp             CCGGGCEEEEEEECS
T ss_pred             CCcccCEEEEEEECC
Confidence            999999999996543

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=1.3e-05  Score=47.60  Aligned_cols=69  Identities=17%  Similarity=0.182  Sum_probs=42.5

Q ss_pred             CCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCC-ceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        212 SGETALLECGPPKGQPEP-TLHWKKNGQFIDLESS-KRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      .++.++|.|.|.+.+|.. .++|.++|+.+..... .......++.+...  ..|.+   ...+...|+|.+....
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~--s~l~v---~~~~~~~ytC~V~H~~   84 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKW--ASVVV---PLGKEQYYTCHVYHQG   84 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEE--EEEEE---ESSTTTTCEEEEECSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEE--EEEEe---cCcCCCEEEEEEEECC
Confidence            456799999995445543 8899999998853221 12344455544433  22333   2334458999997654

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.90  E-value=3.4e-05  Score=47.46  Aligned_cols=69  Identities=19%  Similarity=0.348  Sum_probs=45.6

Q ss_pred             ccEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEe----ecc-C-------CCcceeEEeeec-----EEEEccCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVL----MFP-G-------NAYGHLHVTQEG-----TLRIQGVQK  103 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~----~~~-~-------~~~~~~~~~~~~-----~l~i~~~~~  103 (292)
                      ...+.+|++++|.|.+.|+.  ...+.|+|.  ++.+.    +.. .       ...+++....+.     .|.|.+++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~   88 (118)
T d1nlbh1           9 PELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKN   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeeccc
Confidence            34577899999999998853  346889873  22221    111 1       113455554432     589999999


Q ss_pred             CCCeEEEEEE
Q psy15128        104 EDAGFFVCSA  113 (292)
Q Consensus       104 ~d~g~Y~C~~  113 (292)
                      +|++.|.|..
T Consensus        89 eDtAvYYCAr   98 (118)
T d1nlbh1          89 EDTATYFCAR   98 (118)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEee
Confidence            9999999953

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.90  E-value=4.2e-05  Score=47.16  Aligned_cols=72  Identities=18%  Similarity=0.356  Sum_probs=47.1

Q ss_pred             CCccEEecCCcEEEEEEEeeeCC--CeeEEEEC--CeEEe----ec--c------CCCcceeEEeeec-----EEEEccC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSPL--PSVFWTQE--GSQVL----MF--P------GNAYGHLHVTQEG-----TLRIQGV  101 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~~--~~v~W~~~--~~~~~----~~--~------~~~~~~~~~~~~~-----~l~i~~~  101 (292)
                      +....+.+|++++|.|.+.|+..  ..+.|+|.  ++.+.    +.  .      ....+++....+.     .|.|.++
T Consensus         6 sg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL   85 (117)
T d1um5h1           6 SGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSL   85 (117)
T ss_dssp             CCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeeccccc
Confidence            33456778999999999988643  36889884  22221    11  1      1122445444332     5999999


Q ss_pred             CCCCCeEEEEEEE
Q psy15128        102 QKEDAGFFVCSAL  114 (292)
Q Consensus       102 ~~~d~g~Y~C~~~  114 (292)
                      +.+|++.|.|...
T Consensus        86 ~~eDtAvYYCAr~   98 (117)
T d1um5h1          86 TSEDSAVYYCARS   98 (117)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEeec
Confidence            9999999999643

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.90  E-value=3.7e-05  Score=47.05  Aligned_cols=69  Identities=16%  Similarity=0.477  Sum_probs=46.0

Q ss_pred             ccEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEe----ecc--------CCCcceeEEeeec-----EEEEccCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVL----MFP--------GNAYGHLHVTQEG-----TLRIQGVQK  103 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~----~~~--------~~~~~~~~~~~~~-----~l~i~~~~~  103 (292)
                      ...+.+|++++|.|.+.|+.  ...+.|+|.  |+.+.    +..        ....+++....+.     .|.|.+++.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~   88 (114)
T d1indh1           9 GDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRS   88 (114)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeecc
Confidence            34577899999999998854  336789884  22221    111        1113455555432     599999999


Q ss_pred             CCCeEEEEEE
Q psy15128        104 EDAGFFVCSA  113 (292)
Q Consensus       104 ~d~g~Y~C~~  113 (292)
                      +|++.|.|..
T Consensus        89 eDtAvYYCA~   98 (114)
T d1indh1          89 EDTALYFCAS   98 (114)
T ss_dssp             GGCEEEEEEC
T ss_pred             CcccEEEECC
Confidence            9999999964

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.89  E-value=4.5e-05  Score=47.23  Aligned_cols=68  Identities=13%  Similarity=0.363  Sum_probs=45.4

Q ss_pred             cEEecCCcEEEEEEEeeeCC--CeeEEEEC--CeEEe----e-------ccCCCcceeEEeeec-----EEEEccCCCCC
Q psy15128         46 QKVGLNGIASFQCVAEGSPL--PSVFWTQE--GSQVL----M-------FPGNAYGHLHVTQEG-----TLRIQGVQKED  105 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~~--~~v~W~~~--~~~~~----~-------~~~~~~~~~~~~~~~-----~l~i~~~~~~d  105 (292)
                      -.+.+|++++|.|.+.|+..  ..+.|+|.  ++.+.    +       ......+++....+.     .|.|.+++.+|
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eD   89 (120)
T d1dn0b1          10 GLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAAD   89 (120)
T ss_dssp             CEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccccc
Confidence            45778999999999988643  35789884  22111    0       111223455555432     59999999999


Q ss_pred             CeEEEEEE
Q psy15128        106 AGFFVCSA  113 (292)
Q Consensus       106 ~g~Y~C~~  113 (292)
                      ++.|.|..
T Consensus        90 tA~YYCAr   97 (120)
T d1dn0b1          90 TAVYYCAR   97 (120)
T ss_dssp             CEEEEEEE
T ss_pred             ccEEEEEe
Confidence            99999943

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=3.4e-06  Score=53.03  Aligned_cols=72  Identities=10%  Similarity=0.118  Sum_probs=42.7

Q ss_pred             eEEeCCCceEEEeeCCCC--CCCCeEEEeEc--CeE---eccCCCc----------eEEecCCCcccccccccccccccc
Q psy15128        208 TRVASGETALLECGPPKG--QPEPTLHWKKN--GQF---IDLESSK----------RVSILGDPWFDSRRSRSIFGSVLG  270 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~--~p~~~~~W~~~--g~~---~~~~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~  270 (292)
                      ..+.+|++++|.|.. .+  .....+.|++.  +..   +......          ++.+..+.   ......|.|..+.
T Consensus         9 ~~v~eG~svtl~C~~-~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~Lti~~l~   84 (113)
T d1smoa_           9 YELKEGQTLDVKCDY-TLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYH---DHGLLRVRMVNLQ   84 (113)
T ss_dssp             EECCTTCCEEEEEEC-CHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEET---TTTEEEEEECSCC
T ss_pred             EEEccCCCEEEEEEe-CCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEEC---CCCEEEEEEccCC
Confidence            456789999999986 43  23446889983  211   1100000          11111110   1122358899999


Q ss_pred             ccccceeEEEEee
Q psy15128        271 ALSDDQWKLIAKN  283 (292)
Q Consensus       271 ~~~~g~y~C~a~n  283 (292)
                      .+|+|.|.|.+..
T Consensus        85 ~~Dsg~Y~Cav~~   97 (113)
T d1smoa_          85 VEDSGLYQCVIYQ   97 (113)
T ss_dssp             GGGCEEEEEEECC
T ss_pred             cccCceEEEEEEC
Confidence            9999999998754

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.89  E-value=3.7e-06  Score=51.70  Aligned_cols=71  Identities=11%  Similarity=-0.010  Sum_probs=44.7

Q ss_pred             CCceEEEeeCCCCCCC-CeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        213 GETALLECGPPKGQPE-PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      ...+.|.|.|.+.+|. ..|+|.++|+++............++.+..  ...|.+..-.......|+|.|....
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~--~S~L~v~~~~w~~~~~ytC~V~H~~   90 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFL--YSKLNVKKETWQQGNTFTCSVLHEG   90 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEE--EEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEE--EEEEEECHHHhCCCCEEEEEEEeCC
Confidence            4578899999555665 489999999887432222333444454432  2345555444445558999998853

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.89  E-value=3.6e-06  Score=51.74  Aligned_cols=72  Identities=11%  Similarity=0.056  Sum_probs=43.5

Q ss_pred             CCCceEEEeeCCCCCCC-CeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        212 SGETALLECGPPKGQPE-PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      .++.++|.|.|.+.+|. ..|+|.+||+..............++.|..  ...|.+..-.......|+|.++...
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~--~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFM--YSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEE--EEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEE--EEEEEECHHHcCCCCEEEEEEEeCC
Confidence            36778999999444564 499999999876422222223344444432  2344444333344558999998754

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.89  E-value=2.2e-05  Score=48.89  Aligned_cols=78  Identities=21%  Similarity=0.189  Sum_probs=43.9

Q ss_pred             CcceEEeCCCceEEEeeCCCC----CCCCeEEEeEc--CeE---eccCCCceEEecCCCcc--ccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKG----QPEPTLHWKKN--GQF---IDLESSKRVSILGDPWF--DSRRSRSIFGSVLGALS  273 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~----~p~~~~~W~~~--g~~---~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~~  273 (292)
                      |..+.+.+|++|+|.|.+...    .....+.|++.  |+.   |.........-..+.+.  .......|.|..+..+|
T Consensus         8 P~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eD   87 (112)
T d1ncwl1           8 PKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAED   87 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCc
Confidence            456788999999999985221    22346889873  221   11000000000001110  01222369999999999


Q ss_pred             cceeEEEEe
Q psy15128        274 DDQWKLIAK  282 (292)
Q Consensus       274 ~g~y~C~a~  282 (292)
                      ++.|.|...
T Consensus        88 sAvYYC~~~   96 (112)
T d1ncwl1          88 LGVYYCWQG   96 (112)
T ss_dssp             CEEEEEEEC
T ss_pred             CEeEEEEcC
Confidence            999999553

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.88  E-value=4.5e-05  Score=46.93  Aligned_cols=71  Identities=14%  Similarity=0.355  Sum_probs=46.8

Q ss_pred             ccEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEe----ecc--------CCCcceeEEeeec-----EEEEccCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVL----MFP--------GNAYGHLHVTQEG-----TLRIQGVQK  103 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~----~~~--------~~~~~~~~~~~~~-----~l~i~~~~~  103 (292)
                      ...+.+|++++|.|.+.|+.  ...+.|+|.  ++.+.    +..        ....+++....+.     .|.|.+++.
T Consensus         9 ~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~   88 (117)
T d1iqdb1           9 AEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRS   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCc
Confidence            34567899999999998853  335789883  22221    011        1123444444332     599999999


Q ss_pred             CCCeEEEEEEEe
Q psy15128        104 EDAGFFVCSALS  115 (292)
Q Consensus       104 ~d~g~Y~C~~~~  115 (292)
                      +|++.|.|....
T Consensus        89 eDtAvYYCA~~~  100 (117)
T d1iqdb1          89 DDTAVYYCAVPD  100 (117)
T ss_dssp             GGCEEEEEEECS
T ss_pred             CcceEEEEeEcC
Confidence            999999998643

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.88  E-value=5e-06  Score=51.57  Aligned_cols=73  Identities=11%  Similarity=0.035  Sum_probs=42.9

Q ss_pred             CCCceEEEeeCCCCCCC-CeEEEeEcCeEeccCCCce--EEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        212 SGETALLECGPPKGQPE-PTLHWKKNGQFIDLESSKR--VSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      .+..++|.|.|.+.+|. ..|+|.+||+.+.......  .....++.|...  ..|.+..-.......|+|.|+....
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~--S~L~v~~~~W~~g~~ytC~V~H~~~   94 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMS--STLTLTKDEYERHNSYTCEATHKTS   94 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEE--EEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEE--EEEEECHHHhCCCCEEEEEEEECCC
Confidence            35678999999555665 4899999999885221111  111233333322  2344443333345589999987553

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.88  E-value=1.7e-05  Score=48.54  Aligned_cols=70  Identities=14%  Similarity=0.155  Sum_probs=44.1

Q ss_pred             cCCcEEEEEEEeeeCC--CeeEEEECCeEEeeccC---CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         50 LNGIASFQCVAEGSPL--PSVFWTQEGSQVLMFPG---NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        50 ~g~~~~l~C~~~~~~~--~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      ..+.++|.|.+.++.+  ..+.|.+++........   .......+...+.|.|..........|+|.+.+....
T Consensus        18 ~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~~~   92 (102)
T d1i1ca2          18 TQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE   92 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             cCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCCCC
Confidence            3567899999998632  47999999875421110   0011112233446777776666677899999886443

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.87  E-value=3.6e-05  Score=47.44  Aligned_cols=68  Identities=18%  Similarity=0.398  Sum_probs=44.3

Q ss_pred             cEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEe----eccC--------CCcceeEEeee-----cEEEEccCCCC
Q psy15128         46 QKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVL----MFPG--------NAYGHLHVTQE-----GTLRIQGVQKE  104 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~----~~~~--------~~~~~~~~~~~-----~~l~i~~~~~~  104 (292)
                      ..+.+|++++|.|.+.|..  ...+.|+|.  ++.+.    ....        ...+++....+     ..|.|.+++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~e   89 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFE   89 (115)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcC
Confidence            3467799999999998753  346889873  32221    1111        11234444432     25999999999


Q ss_pred             CCeEEEEEE
Q psy15128        105 DAGFFVCSA  113 (292)
Q Consensus       105 d~g~Y~C~~  113 (292)
                      |++.|.|..
T Consensus        90 DtAvYYCAr   98 (115)
T d1f3dh1          90 DSAVYYCAN   98 (115)
T ss_dssp             GCEEEEEEE
T ss_pred             CcEEEEEec
Confidence            999999964

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.87  E-value=4.4e-05  Score=47.58  Aligned_cols=69  Identities=16%  Similarity=0.332  Sum_probs=43.9

Q ss_pred             cEEecCCcEEEEEEEeeeC----CCeeEEEEC--CeEEe----ec-c------CCCcceeEEeee-----cEEEEccCCC
Q psy15128         46 QKVGLNGIASFQCVAEGSP----LPSVFWTQE--GSQVL----MF-P------GNAYGHLHVTQE-----GTLRIQGVQK  103 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~----~~~v~W~~~--~~~~~----~~-~------~~~~~~~~~~~~-----~~l~i~~~~~  103 (292)
                      ..+.+|++++|.|.+.|+.    ...+.|+|.  ++.+.    .. .      ....+++....+     ..|.|.+++.
T Consensus        10 ~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~   89 (120)
T d2agjh1          10 TLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDP   89 (120)
T ss_dssp             SBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCG
T ss_pred             eeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeee
Confidence            3467799999999987753    235789984  22111    00 0      011234444332     2699999999


Q ss_pred             CCCeEEEEEEE
Q psy15128        104 EDAGFFVCSAL  114 (292)
Q Consensus       104 ~d~g~Y~C~~~  114 (292)
                      +|++.|.|...
T Consensus        90 eDsAvYyCAr~  100 (120)
T d2agjh1          90 VDTATYYCART  100 (120)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEeeEec
Confidence            99999999643

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.87  E-value=5e-05  Score=46.68  Aligned_cols=69  Identities=16%  Similarity=0.319  Sum_probs=45.7

Q ss_pred             ccEEecCCcEEEEEEEeeeCC--CeeEEEEC--CeEEe------ec------cCCCcceeEEeeec-----EEEEccCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSPL--PSVFWTQE--GSQVL------MF------PGNAYGHLHVTQEG-----TLRIQGVQK  103 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~--~~v~W~~~--~~~~~------~~------~~~~~~~~~~~~~~-----~l~i~~~~~  103 (292)
                      ...+.+|+++.|.|.+.|+..  ..+.|+|.  ++.+.      ..      .....+++.+..+.     .|.|.+++.
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~   88 (117)
T d1jnhb1           9 AELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTS   88 (117)
T ss_dssp             CEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCC
Confidence            344567999999999998643  35789873  22111      01      11223455555432     599999999


Q ss_pred             CCCeEEEEEE
Q psy15128        104 EDAGFFVCSA  113 (292)
Q Consensus       104 ~d~g~Y~C~~  113 (292)
                      +|++.|.|..
T Consensus        89 eDTAvYYCAr   98 (117)
T d1jnhb1          89 EDSAVYSCSR   98 (117)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEee
Confidence            9999999964

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.87  E-value=5e-05  Score=46.31  Aligned_cols=68  Identities=15%  Similarity=0.192  Sum_probs=42.0

Q ss_pred             EecCCcEEEEEEEeeeCC--CeeEEEECCeEEeeccCCCcceeE------EeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         48 VGLNGIASFQCVAEGSPL--PSVFWTQEGSQVLMFPGNAYGHLH------VTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        48 ~~~g~~~~l~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      +..|+..+|.|.+.|+.+  ..|.|.+++..+.   +.......      +...+.|.+.   .++...|+|.+.+....
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~---~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~~l~   88 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVE---GFGPTFVSAVDGLSFQAFSYLNFT---PEPSDIFSCIVTHEPDR   88 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECS---SCCCEEEEEETTTEEEEEEEEEEC---CCTTCCEEEEEEETTTT
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecC---CcEeceEEeCCCCcEEEEEEEEEe---cCCCCEEEEEEEeCCCC
Confidence            345788899999999633  3799999987642   11111111      2222345554   34455799999987554


Q ss_pred             ee
Q psy15128        120 TT  121 (292)
Q Consensus       120 ~~  121 (292)
                      ..
T Consensus        89 ~p   90 (103)
T d1hdma1          89 YT   90 (103)
T ss_dssp             EE
T ss_pred             CC
Confidence            44

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.87  E-value=2.9e-05  Score=48.98  Aligned_cols=77  Identities=13%  Similarity=0.124  Sum_probs=44.7

Q ss_pred             cceEEeCCCceEEEeeCCCCC--CCCeEEEeEc--Ce---Eec-c-CCCceE-EecCCCcccc-----cccccccccccc
Q psy15128        206 KDTRVASGETALLECGPPKGQ--PEPTLHWKKN--GQ---FID-L-ESSKRV-SILGDPWFDS-----RRSRSIFGSVLG  270 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~--p~~~~~W~~~--g~---~~~-~-~~~~~~-~~~~~~~~~~-----~~~~~l~i~~~~  270 (292)
                      ..+...+|++++|.|.+ .+.  ....+.|++-  |+   .|- . ..+... .-...+.+..     .....|.|..+.
T Consensus         9 ~sv~~~~G~svtL~C~~-~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~   87 (120)
T d1ypzf1           9 ISISRPRDETAQISCKV-FIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLE   87 (120)
T ss_dssp             SEEEEETTSCEEEEEEE-CCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCC
T ss_pred             CEEEecCCCcEEEEEEE-ecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccc
Confidence            35677799999999986 332  2346899982  21   121 0 111111 1111111111     122358999999


Q ss_pred             ccccceeEEEEee
Q psy15128        271 ALSDDQWKLIAKN  283 (292)
Q Consensus       271 ~~~~g~y~C~a~n  283 (292)
                      .+|+|.|.|.+.-
T Consensus        88 ~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          88 EEDEAIYYCSYGE  100 (120)
T ss_dssp             GGGCSEEEEEECC
T ss_pred             cccceeEEEEEcC
Confidence            9999999997753

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.87  E-value=7.5e-05  Score=46.01  Aligned_cols=71  Identities=13%  Similarity=0.334  Sum_probs=46.0

Q ss_pred             CccEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEe----ecc--------CCCcceeEEeeec-----EEEEccCC
Q psy15128         44 QDQKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVL----MFP--------GNAYGHLHVTQEG-----TLRIQGVQ  102 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~----~~~--------~~~~~~~~~~~~~-----~l~i~~~~  102 (292)
                      ....+.+|+++.|.|.+.|+.  ...+.|+|.  |+.+.    ...        ....++..+..+.     .|.|.+++
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~   87 (118)
T d1ct8b1           8 GAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLT   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccC
Confidence            345577899999999998854  336788873  22221    011        1112344444332     58999999


Q ss_pred             CCCCeEEEEEEE
Q psy15128        103 KEDAGFFVCSAL  114 (292)
Q Consensus       103 ~~d~g~Y~C~~~  114 (292)
                      .+|++.|.|...
T Consensus        88 ~eDtAvYYCAr~   99 (118)
T d1ct8b1          88 TEDSAIYYCARY   99 (118)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEeee
Confidence            999999999653

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.86  E-value=6.2e-05  Score=46.37  Aligned_cols=71  Identities=14%  Similarity=0.337  Sum_probs=45.5

Q ss_pred             CCccEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEe----ecc--------CCCcceeEEeee-----cEEEEccC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVL----MFP--------GNAYGHLHVTQE-----GTLRIQGV  101 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~----~~~--------~~~~~~~~~~~~-----~~l~i~~~  101 (292)
                      +....+.+|++++|.|.+.|+.  ...+.|+|.  ++.+.    ...        ....++.....+     ..|.|.++
T Consensus         7 sg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L   86 (117)
T d1mfah1           7 SGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSL   86 (117)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeeccc
Confidence            3345567899999999998753  335778873  33221    010        111234444433     25999999


Q ss_pred             CCCCCeEEEEEE
Q psy15128        102 QKEDAGFFVCSA  113 (292)
Q Consensus       102 ~~~d~g~Y~C~~  113 (292)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYYCAr   98 (117)
T d1mfah1          87 TSEDSAVYYCTR   98 (117)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCcceEEEEec
Confidence            999999999964

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.86  E-value=8.5e-06  Score=49.35  Aligned_cols=70  Identities=16%  Similarity=0.102  Sum_probs=40.9

Q ss_pred             CCCceEEEeeCCCCCCC-CeEEEeEcCeEeccCCC-ceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        212 SGETALLECGPPKGQPE-PTLHWKKNGQFIDLESS-KRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      .++..+|.|.+.+.+|. ..+.|.+||+++..... ......+++.|....  .|.   +...+...|+|.++...-
T Consensus        15 ~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s--~l~---v~~~~~~~ytC~V~H~sl   86 (97)
T d1uvqb1          15 LNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILV--MLE---MTPQRGDVYTCHVEHPSL   86 (97)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEE--EEE---CCSCTTCCEEEEEECTTC
T ss_pred             CCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEE--Eec---cCCCCCCEEEEEEEeCCC
Confidence            46677899999555664 49999999988753211 123334444444322  222   345556699999987644

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=1.9e-05  Score=44.11  Aligned_cols=58  Identities=12%  Similarity=0.150  Sum_probs=37.1

Q ss_pred             eCCCceEEEeeCCCCCC-CCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128        211 ASGETALLECGPPKGQP-EPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK  282 (292)
Q Consensus       211 ~~g~~~~l~C~~~~~~p-~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~  282 (292)
                      ..|..+.|+|....... ...-.|.|+|+.|..........            ...+.  ..+++|+|.|+-.
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~~~t------------ey~V~--~~D~SGeY~CVFl   68 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKT------------EFKVD--SDDQWGEYSCVFL   68 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCSEE------------EEEEC--GGGCCEEEEEEEE
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCCCce------------EEEEe--cCCCCceEEEEEc
Confidence            56888999999744333 23678999999996332221111            11222  3678999999965

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=4.6e-06  Score=51.11  Aligned_cols=71  Identities=14%  Similarity=0.056  Sum_probs=42.7

Q ss_pred             CCceEEEeeCCCCCCC-CeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        213 GETALLECGPPKGQPE-PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      .+.++|.|.|.+.+|. ..|.|.+||+++............++.|...  ..|.+..-.......|+|.+....
T Consensus        18 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~--S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          18 KDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVY--SKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEE--EEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEE--EEEEECHHHhCCCCEEEEEEEECC
Confidence            4568999999444563 4899999999874222222334445444322  234444333344558999998753

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.85  E-value=3.4e-05  Score=48.69  Aligned_cols=75  Identities=17%  Similarity=0.240  Sum_probs=46.1

Q ss_pred             cceEEeCCCceEEEeeCCCCCC--CCeEEEeEc--Ce---EeccCCC-------ceEEecCCCccccccccccccccccc
Q psy15128        206 KDTRVASGETALLECGPPKGQP--EPTLHWKKN--GQ---FIDLESS-------KRVSILGDPWFDSRRSRSIFGSVLGA  271 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--g~---~~~~~~~-------~~~~~~~~~~~~~~~~~~l~i~~~~~  271 (292)
                      +...+.+|++++|+|.+ .+..  ...+.|++.  |+   .|.....       .++....+   .......|.|..+..
T Consensus         9 ~sv~v~~G~~vtL~C~~-s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~---~~~~~~~L~i~~~~~   84 (120)
T d1hxma1           9 QTVPVSIGVPATLRCSM-KGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDID---IAKNLAVLKILAPSE   84 (120)
T ss_dssp             SEEEEETTCCEEEEEEE-CSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEE---GGGTEEEEEESSCCG
T ss_pred             CCEEECCCCCEEEEEEE-eccCccCCcCeEEEccccccceeeeccccceeecccccceeecc---ccccceecccccccc
Confidence            46678999999999997 4432  346999982  22   1111111       11111110   112335789999999


Q ss_pred             cccceeEEEEeec
Q psy15128        272 LSDDQWKLIAKNI  284 (292)
Q Consensus       272 ~~~g~y~C~a~n~  284 (292)
                      +|+|.|.|.....
T Consensus        85 ~Dsa~YyCA~~~~   97 (120)
T d1hxma1          85 RDEGSYYCACDTL   97 (120)
T ss_dssp             GGCEEEEEEEECC
T ss_pred             cCCceeecCcccC
Confidence            9999999987543

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.85  E-value=4.4e-05  Score=47.42  Aligned_cols=70  Identities=14%  Similarity=0.292  Sum_probs=45.6

Q ss_pred             ccEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEee----ccC--------CCcceeEEeeec-----EEEEccCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVLM----FPG--------NAYGHLHVTQEG-----TLRIQGVQK  103 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~~----~~~--------~~~~~~~~~~~~-----~l~i~~~~~  103 (292)
                      ...+.+|++++|.|.+.|..  ...+.|+|.  |+.+..    ...        ...+++....+.     .|.|.+++.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~   88 (120)
T d1pg7x1           9 PELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTS   88 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCC
Confidence            34567899999999998753  335789883  222211    111        112344444322     599999999


Q ss_pred             CCCeEEEEEEE
Q psy15128        104 EDAGFFVCSAL  114 (292)
Q Consensus       104 ~d~g~Y~C~~~  114 (292)
                      +|++.|.|...
T Consensus        89 eDtA~YYCAr~   99 (120)
T d1pg7x1          89 NDSAVYYCARE   99 (120)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEeeec
Confidence            99999999754

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.85  E-value=2.3e-06  Score=52.82  Aligned_cols=70  Identities=13%  Similarity=0.166  Sum_probs=43.1

Q ss_pred             cCCcEEEEEEEeee-CC-CeeEEEECCeEEeeccCC---CcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         50 LNGIASFQCVAEGS-PL-PSVFWTQEGSQVLMFPGN---AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        50 ~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      .+..++|.|.+.++ |. ..|.|.+++..+......   ......+...+.|.|......+...|+|.+.+....
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~   93 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET   93 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCCc
Confidence            46678999999995 43 379999999877421110   001111222334555555555667899999986543

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.84  E-value=3.1e-05  Score=48.36  Aligned_cols=79  Identities=16%  Similarity=0.219  Sum_probs=47.0

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--CeE---e-c-cCCCceEEecCCCcccc----ccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQF---I-D-LESSKRVSILGDPWFDS----RRSRSIFGSVLGALS  273 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~---~-~-~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~~  273 (292)
                      |....+.+|+.++|.|....+  ...+.|++-  |+.   | . ........-.....+..    .....|.|..+..+|
T Consensus         8 P~~~~~~~G~~v~l~C~~~~~--~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   85 (113)
T d1nfdb1           8 PRHIIKEKGGRSVLTCIPISG--HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELED   85 (113)
T ss_dssp             CSEEEEETTCCCEEEEECCTT--CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGG
T ss_pred             CCEEEEeCCCCEEEEEEeCCC--CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCC
Confidence            456788999999999996333  347999983  221   1 0 01111111000111111    223468899999999


Q ss_pred             cceeEEEEeecc
Q psy15128        274 DDQWKLIAKNIR  285 (292)
Q Consensus       274 ~g~y~C~a~n~~  285 (292)
                      +|.|.|.+....
T Consensus        86 sa~YyCa~~~~~   97 (113)
T d1nfdb1          86 SAMYFCASSLRW   97 (113)
T ss_dssp             CEEECEEEESSS
T ss_pred             ceeEEEEeecCC
Confidence            999999876443

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.84  E-value=4.8e-05  Score=46.87  Aligned_cols=70  Identities=14%  Similarity=0.351  Sum_probs=45.4

Q ss_pred             CccEEecCCcEEEEEEEeeeCC--CeeEEEEC--CeEEe----ec--cC------CCcceeEEeeec-----EEEEccCC
Q psy15128         44 QDQKVGLNGIASFQCVAEGSPL--PSVFWTQE--GSQVL----MF--PG------NAYGHLHVTQEG-----TLRIQGVQ  102 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~~~--~~v~W~~~--~~~~~----~~--~~------~~~~~~~~~~~~-----~l~i~~~~  102 (292)
                      ....+.+|+++.|.|.+.|+..  ..+.|+|.  ++.+.    +.  .+      ...+++.+..+.     .|.|.+++
T Consensus         8 g~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~   87 (118)
T d2jelh1           8 GPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLT   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccc
Confidence            3445778999999999988643  35889873  22211    11  11      112444444332     59999999


Q ss_pred             CCCCeEEEEEE
Q psy15128        103 KEDAGFFVCSA  113 (292)
Q Consensus       103 ~~d~g~Y~C~~  113 (292)
                      .+|++.|.|..
T Consensus        88 ~eDTAvYYCAr   98 (118)
T d2jelh1          88 SEDSAIYYCAR   98 (118)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cCcceeeeEEE
Confidence            99999999953

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.84  E-value=7.3e-05  Score=45.97  Aligned_cols=71  Identities=18%  Similarity=0.308  Sum_probs=45.9

Q ss_pred             ccEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEe----ecc-------CCCcceeEEeee-----cEEEEccCCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVL----MFP-------GNAYGHLHVTQE-----GTLRIQGVQKE  104 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~----~~~-------~~~~~~~~~~~~-----~~l~i~~~~~~  104 (292)
                      ...+.+|++++|.|.+.|+.  ...+.|+|.  ++.+.    ...       ....+++....+     ..|.|.+++.+
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~e   88 (116)
T d7fabh1           9 PGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAA   88 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccc
Confidence            44577899999999998864  336889873  22111    000       111234444432     25999999999


Q ss_pred             CCeEEEEEEEe
Q psy15128        105 DAGFFVCSALS  115 (292)
Q Consensus       105 d~g~Y~C~~~~  115 (292)
                      |++.|.|....
T Consensus        89 DtAvYyCAr~~   99 (116)
T d7fabh1          89 DTAVYYCARNL   99 (116)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceEEEeeeec
Confidence            99999997543

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=4e-06  Score=52.16  Aligned_cols=73  Identities=15%  Similarity=0.122  Sum_probs=43.4

Q ss_pred             eCCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCce--EEe---cCCCccccccccccccccccccccceeEEEEeec
Q psy15128        211 ASGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKR--VSI---LGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       211 ~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~--~~~---~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      ..++.++|.|.|...+|.. .|.|++||+++.......  ...   .+++.|.  ....|.+..-.......|+|.|.+.
T Consensus        18 ~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys--~~S~L~v~~~~w~~g~~ytC~V~H~   95 (108)
T d1ow0a2          18 ALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFA--VTSILRVAAEDWKKGDTFSCMVGHE   95 (108)
T ss_dssp             TSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEE--EEEEEEEEHHHHHHTCCEEEEEECT
T ss_pred             ccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEE--EEEEEEEcHHHhCCCCEEEEEEEeC
Confidence            3577899999995556654 899999999885321111  111   1233332  2223444433334456999999875


Q ss_pred             c
Q psy15128        285 R  285 (292)
Q Consensus       285 ~  285 (292)
                      .
T Consensus        96 s   96 (108)
T d1ow0a2          96 A   96 (108)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.84  E-value=1.2e-05  Score=50.73  Aligned_cols=73  Identities=8%  Similarity=0.029  Sum_probs=46.4

Q ss_pred             eCCCceEEEeeCCCCCC---CCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        211 ASGETALLECGPPKGQP---EPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       211 ~~g~~~~l~C~~~~~~p---~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      ..++.+.|.|.|.+.+|   ...++|+++|..+............++.|...  ..|.+..-.......|+|.|++..
T Consensus        30 ~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~--S~L~v~~~eW~~g~~ytC~V~H~~  105 (119)
T d1igtb3          30 MISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVV--SALPIQHQDWMSGKEFKCKVNNKD  105 (119)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEE--EEEECCHHHHHTTCEEEEEEECTT
T ss_pred             ccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEE--EEEEEeHHHhCCCCeEEEEEEECC
Confidence            35788999999843345   35789999999886444444444555554422  344444443444558999999754

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.84  E-value=9.4e-05  Score=41.81  Aligned_cols=78  Identities=13%  Similarity=0.118  Sum_probs=49.6

Q ss_pred             cceEEeCCCceEEEeeCCCCCCCCeEEEeE-cCe---EeccCCCceEEecCCCccccccccccccccccccccceeEEEE
Q psy15128        206 KDTRVASGETALLECGPPKGQPEPTLHWKK-NGQ---FIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIA  281 (292)
Q Consensus       206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~g~---~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a  281 (292)
                      ....+..|+...|+|.+.--.-.|.++|-| +|.   ++.........-.+++....   ..|....+-..|.|.|+|.|
T Consensus        11 S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~---FvLhF~pvl~sDnGsYrCSa   87 (104)
T d1xaua_          11 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPV---FVLHFKPIHLSDNGSYSCST   87 (104)
T ss_dssp             EEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCE---EEEEETTCCGGGCEEEEEEE
T ss_pred             ceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeE---EEEEeeeeeecCCCceEEec
Confidence            345788999999999985556678999988 342   33222222222223322111   14556678899999999999


Q ss_pred             eeccc
Q psy15128        282 KNIRN  286 (292)
Q Consensus       282 ~n~~g  286 (292)
                      .-..|
T Consensus        88 nf~s~   92 (104)
T d1xaua_          88 NFNSQ   92 (104)
T ss_dssp             EETTE
T ss_pred             CCChh
Confidence            75444

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.84  E-value=8.1e-05  Score=46.76  Aligned_cols=69  Identities=17%  Similarity=0.414  Sum_probs=45.1

Q ss_pred             cEEecCCcEEEEEEEeeeC--CCeeEEEECC--eEEee-----------------ccCCCcceeEEeee-----cEEEEc
Q psy15128         46 QKVGLNGIASFQCVAEGSP--LPSVFWTQEG--SQVLM-----------------FPGNAYGHLHVTQE-----GTLRIQ   99 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~~~-----------------~~~~~~~~~~~~~~-----~~l~i~   99 (292)
                      ..+.+|++++|.|.+.|+.  ...+.|+|..  +.+..                 ......+++....+     ..|.|.
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~   89 (127)
T d1i3ua_          10 GLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMN   89 (127)
T ss_dssp             EECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEEC
T ss_pred             ceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeee
Confidence            3466799999999998753  3367898742  11100                 01112234444432     259999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy15128        100 GVQKEDAGFFVCSAL  114 (292)
Q Consensus       100 ~~~~~d~g~Y~C~~~  114 (292)
                      +++.+|++.|.|...
T Consensus        90 ~l~~eDtAvYYCAr~  104 (127)
T d1i3ua_          90 SLKPEDTAVYYCAAK  104 (127)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             cccccceeEEEEEEE
Confidence            999999999999864

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.84  E-value=5.2e-05  Score=46.41  Aligned_cols=72  Identities=17%  Similarity=0.460  Sum_probs=46.6

Q ss_pred             CCCccEEecCCcEEEEEEEeeeCC--CeeEEEEC--CeEEe----eccC--------CCcceeEEeeec-----EEEEcc
Q psy15128         42 RPQDQKVGLNGIASFQCVAEGSPL--PSVFWTQE--GSQVL----MFPG--------NAYGHLHVTQEG-----TLRIQG  100 (292)
Q Consensus        42 ~~~~~~~~~g~~~~l~C~~~~~~~--~~v~W~~~--~~~~~----~~~~--------~~~~~~~~~~~~-----~l~i~~  100 (292)
                      ++....+.+|+++.|.|.+.|+..  ..+.|+|.  |+.+.    +...        ...+++.+..+.     .|.+.+
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~s   85 (116)
T d1mjuh1           6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS   85 (116)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccc
Confidence            344456778999999999988543  35789873  22221    1111        112344444332     589999


Q ss_pred             CCCCCCeEEEEEE
Q psy15128        101 VQKEDAGFFVCSA  113 (292)
Q Consensus       101 ~~~~d~g~Y~C~~  113 (292)
                      ++.+|++.|.|..
T Consensus        86 L~~eDtAvYYCAr   98 (116)
T d1mjuh1          86 LTSDDSAVYYCAN   98 (116)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCCceEEEEcc
Confidence            9999999999964

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.83  E-value=3.4e-05  Score=47.77  Aligned_cols=73  Identities=15%  Similarity=0.115  Sum_probs=42.7

Q ss_pred             eEEeCCCceEEEeeCCCCCCCC--eEEEeEc--CeEe------ccCCCceEEecCCCcccc-----cccccccccccccc
Q psy15128        208 TRVASGETALLECGPPKGQPEP--TLHWKKN--GQFI------DLESSKRVSILGDPWFDS-----RRSRSIFGSVLGAL  272 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~--g~~~------~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~  272 (292)
                      ..+++|++++|+|.+ .|+...  .+.|++.  |+-+      .......+...-.+.+..     +....|.|..++.+
T Consensus        10 ~~vkPG~sl~LsC~~-SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~e   88 (120)
T d1dn0b1          10 GLLKPSETLSLTCAV-YGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA   88 (120)
T ss_dssp             CEECTTSCEEEEEEE-ESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEE-ccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccc
Confidence            457899999999998 665433  5778872  3322      111111111111111211     22335888899999


Q ss_pred             ccceeEEEE
Q psy15128        273 SDDQWKLIA  281 (292)
Q Consensus       273 ~~g~y~C~a  281 (292)
                      |.+.|.|..
T Consensus        89 DtA~YYCAr   97 (120)
T d1dn0b1          89 DTAVYYCAR   97 (120)
T ss_dssp             GCEEEEEEE
T ss_pred             cccEEEEEe
Confidence            999999943

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.83  E-value=6.9e-05  Score=46.44  Aligned_cols=72  Identities=15%  Similarity=0.380  Sum_probs=47.5

Q ss_pred             CCccEEecCCcEEEEEEEeeeCC--CeeEEEEC--CeEEe----ec--cC------CCcceeEEeeec-----EEEEccC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSPL--PSVFWTQE--GSQVL----MF--PG------NAYGHLHVTQEG-----TLRIQGV  101 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~~--~~v~W~~~--~~~~~----~~--~~------~~~~~~~~~~~~-----~l~i~~~  101 (292)
                      +....+.+|++++|.|.+.|+..  ..+.|+|.  ++.+.    +.  .+      ...+++.+..+.     .|.|.++
T Consensus         8 sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L   87 (122)
T d1vgeh1           8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSL   87 (122)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeeccccc
Confidence            34456788999999999988643  35889883  22221    11  11      113455554432     5999999


Q ss_pred             CCCCCeEEEEEEE
Q psy15128        102 QKEDAGFFVCSAL  114 (292)
Q Consensus       102 ~~~d~g~Y~C~~~  114 (292)
                      +.+|++.|.|...
T Consensus        88 ~~eDtA~YYCAr~  100 (122)
T d1vgeh1          88 RPEDTAVYYCARD  100 (122)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEeec
Confidence            9999999999754

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.82  E-value=9.6e-05  Score=45.53  Aligned_cols=71  Identities=18%  Similarity=0.409  Sum_probs=46.9

Q ss_pred             ccEEecCCcEEEEEEEeeeCC--CeeEEEEC--CeEEe----ec--------cCCCcceeEEeeec-----EEEEccCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSPL--PSVFWTQE--GSQVL----MF--------PGNAYGHLHVTQEG-----TLRIQGVQK  103 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~--~~v~W~~~--~~~~~----~~--------~~~~~~~~~~~~~~-----~l~i~~~~~  103 (292)
                      ...+.+|+++.|.|.+.|+..  ..+.|+|.  |+.+.    +.        .....+++.+..+.     .|.|.+++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (118)
T d2fbjh1           9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCC
Confidence            345778999999999988643  35789873  22221    01        11223455554432     599999999


Q ss_pred             CCCeEEEEEEEe
Q psy15128        104 EDAGFFVCSALS  115 (292)
Q Consensus       104 ~d~g~Y~C~~~~  115 (292)
                      +|++.|.|....
T Consensus        89 eDtAvYYCAr~~  100 (118)
T d2fbjh1          89 EDTALYYCARLH  100 (118)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CcceEEEeeEec
Confidence            999999997644

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.81  E-value=8.5e-06  Score=50.08  Aligned_cols=72  Identities=10%  Similarity=0.030  Sum_probs=43.3

Q ss_pred             CCCceEEEeeCCCCCCC---CeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        212 SGETALLECGPPKGQPE---PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~---~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      .+..++|.|.+....|.   ..++|.++|..+............++.|..  ...|.+..-.....-.|+|.|++..
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~--~S~L~v~~~~W~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRS--VSELPIVERDWLNGKTFKCKVNSGA   89 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEE--EEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEE--EEEEEECHHHhcCCCEEEEEEEeCC
Confidence            56778999999443553   588999999887533323333344444332  2234444333333447999999754

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.81  E-value=9.8e-05  Score=45.61  Aligned_cols=70  Identities=17%  Similarity=0.363  Sum_probs=46.2

Q ss_pred             ccEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEe----e--cc------CCCcceeEEeeec-----EEEEccCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVL----M--FP------GNAYGHLHVTQEG-----TLRIQGVQK  103 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~----~--~~------~~~~~~~~~~~~~-----~l~i~~~~~  103 (292)
                      ...+.+|+++.|.|.+.|+.  ...+.|+|.  ++.+.    +  ..      ....+++.+..+.     .|.|.+++.
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~   88 (119)
T d1rz7h1           9 AEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRS   88 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCc
Confidence            34567899999999998854  336889874  22111    0  11      1123455554432     599999999


Q ss_pred             CCCeEEEEEEE
Q psy15128        104 EDAGFFVCSAL  114 (292)
Q Consensus       104 ~d~g~Y~C~~~  114 (292)
                      +|++.|.|...
T Consensus        89 eDTAvYYCAr~   99 (119)
T d1rz7h1          89 EDTAVYYCAAD   99 (119)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccceEEEEeec
Confidence            99999999653

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.81  E-value=4.4e-05  Score=46.28  Aligned_cols=69  Identities=17%  Similarity=0.425  Sum_probs=46.0

Q ss_pred             ccEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEe----ec----------cCCCcceeEEeee-----cEEEEccC
Q psy15128         45 DQKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVL----MF----------PGNAYGHLHVTQE-----GTLRIQGV  101 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~----~~----------~~~~~~~~~~~~~-----~~l~i~~~  101 (292)
                      ...+.+|++++|.|.+.|..  ...+.|+|.  ++.+.    +.          .....+++....+     ..|.|.++
T Consensus         9 ~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL   88 (109)
T d2ck0h1           9 GGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNL   88 (109)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCC
Confidence            44577899999999998753  336889873  22211    00          1112245555543     25999999


Q ss_pred             CCCCCeEEEEEE
Q psy15128        102 QKEDAGFFVCSA  113 (292)
Q Consensus       102 ~~~d~g~Y~C~~  113 (292)
                      +.+|++.|.|..
T Consensus        89 ~~eDTAvYYCAr  100 (109)
T d2ck0h1          89 KTEDTGIYYCVR  100 (109)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CHhHCEEEEEEE
Confidence            999999999974

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.81  E-value=1e-05  Score=50.10  Aligned_cols=74  Identities=15%  Similarity=0.161  Sum_probs=44.3

Q ss_pred             EeCCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccc-cceeEEEEeecccc
Q psy15128        210 VASGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALS-DDQWKLIAKNIRNQ  287 (292)
Q Consensus       210 ~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~C~a~n~~g~  287 (292)
                      ...+..++|.|.|.+.+|.. .|.|.+||..+............++.+...  ..|.+.   .++ ...|+|.++...+.
T Consensus        21 ~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~--S~L~v~---~~~w~~~ytC~V~H~s~~   95 (107)
T d1hxmb2          21 TKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKF--SWLTVP---EKSLDKEHRCIVRHENNK   95 (107)
T ss_dssp             GGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEE--EEEEEC---TGGGGSCEEEEEEETTSG
T ss_pred             HccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEE--EEEEEe---cccCCCeEEEEEEECCCC
Confidence            44577899999995556644 899999998775322222222334433322  234343   233 33799999986554


Q ss_pred             c
Q psy15128        288 Q  288 (292)
Q Consensus       288 ~  288 (292)
                      .
T Consensus        96 ~   96 (107)
T d1hxmb2          96 N   96 (107)
T ss_dssp             G
T ss_pred             C
Confidence            4

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=2.3e-05  Score=47.45  Aligned_cols=70  Identities=11%  Similarity=0.007  Sum_probs=41.1

Q ss_pred             eEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128        208 TRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI  284 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~  284 (292)
                      ..+..|++|+|.|..  ......|.++|+|.....   ........  ........+.|..+...|.|.|+|.-...
T Consensus        13 ~~v~~G~~VTL~C~~--~~~~~~f~L~k~g~~~~~---~~~~~~~~--~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   82 (98)
T d1ugna2          13 PVVNSGGNVTLQCDS--QVAFDGFILCKEGEDEHP---QCLNSQPH--ARGSSRAIFSVGPVSPSRRWWYRCYAYDS   82 (98)
T ss_dssp             SEEETTCCEEEEEEC--SSCCSEEEEEEC---------CEEEC--------CCEEEEEECCCCTTSCEEEEEEEECT
T ss_pred             CccCCCCcEEEEeCC--CCCCCEEEEEECCCcCCc---EeeeeEEc--CCCceEEEEEeeecccCCCeEEEEeeEcC
Confidence            457899999999984  455668888898764321   01100000  00011124778899999999999976543

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.80  E-value=9.1e-05  Score=44.69  Aligned_cols=66  Identities=12%  Similarity=0.274  Sum_probs=39.5

Q ss_pred             cCCcEEEEEEEeeeCC--CeeEEEECC--eEEe------ec------cCCCcceeEEeeec-----EEEEccCCCCCCeE
Q psy15128         50 LNGIASFQCVAEGSPL--PSVFWTQEG--SQVL------MF------PGNAYGHLHVTQEG-----TLRIQGVQKEDAGF  108 (292)
Q Consensus        50 ~g~~~~l~C~~~~~~~--~~v~W~~~~--~~~~------~~------~~~~~~~~~~~~~~-----~l~i~~~~~~d~g~  108 (292)
                      +|++++|.|.+.|+..  ..+.|+|..  +.+.      ..      .....+++....+.     .|.|.+++.+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            4899999999988643  368898742  2211      00      11223455444332     59999999999999


Q ss_pred             EEEEEEe
Q psy15128        109 FVCSALS  115 (292)
Q Consensus       109 Y~C~~~~  115 (292)
                      |.|....
T Consensus        81 YYCAr~~   87 (103)
T d1oari_          81 YYCARMW   87 (103)
T ss_dssp             EEEEEEE
T ss_pred             EEeEEEC
Confidence            9997544

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.80  E-value=5.7e-05  Score=46.66  Aligned_cols=69  Identities=16%  Similarity=0.362  Sum_probs=45.0

Q ss_pred             ccEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEe----eccC--------CCcceeEEeeec-----EEEEccCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVL----MFPG--------NAYGHLHVTQEG-----TLRIQGVQK  103 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~----~~~~--------~~~~~~~~~~~~-----~l~i~~~~~  103 (292)
                      ...+.+|++++|.|.+.|+.  ...+.|+|.  ++.+.    +...        ...+++....+.     .|.|.+++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (119)
T d1eapb1           9 TELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTS   88 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccC
Confidence            34567899999999998864  336889874  22221    1111        112344444322     599999999


Q ss_pred             CCCeEEEEEE
Q psy15128        104 EDAGFFVCSA  113 (292)
Q Consensus       104 ~d~g~Y~C~~  113 (292)
                      +|++.|.|..
T Consensus        89 eDTAvYYCAr   98 (119)
T d1eapb1          89 EDSAVYFCKR   98 (119)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEEE
Confidence            9999999964

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.80  E-value=8.4e-05  Score=46.47  Aligned_cols=71  Identities=15%  Similarity=0.420  Sum_probs=46.8

Q ss_pred             ccEEecCCcEEEEEEEeeeCCC--eeEEEEC--CeEEe------------eccCCCcceeEEeeec-----EEEEccCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSPLP--SVFWTQE--GSQVL------------MFPGNAYGHLHVTQEG-----TLRIQGVQK  103 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~~--~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~~-----~l~i~~~~~  103 (292)
                      ...+.+|++++|.|.+.|+...  .+.|+|.  ++.+.            .......+++.+..+.     .|.|.+++.
T Consensus         9 ~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~   88 (128)
T d2nxyd1           9 AEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRS   88 (128)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccc
Confidence            4457789999999999886433  4678773  21111            0111223555555432     589999999


Q ss_pred             CCCeEEEEEEEe
Q psy15128        104 EDAGFFVCSALS  115 (292)
Q Consensus       104 ~d~g~Y~C~~~~  115 (292)
                      +|++.|.|....
T Consensus        89 eDTA~YYCAr~~  100 (128)
T d2nxyd1          89 DDTAVYFCAGVY  100 (128)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             cCceEEEEeEEe
Confidence            999999998653

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.80  E-value=8.4e-05  Score=45.74  Aligned_cols=69  Identities=20%  Similarity=0.449  Sum_probs=46.1

Q ss_pred             cEEecCCcEEEEEEEeeeCC--CeeEEEEC--CeEEe-----------eccCCCcceeEEeeec-----EEEEccCCCCC
Q psy15128         46 QKVGLNGIASFQCVAEGSPL--PSVFWTQE--GSQVL-----------MFPGNAYGHLHVTQEG-----TLRIQGVQKED  105 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~~--~~v~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~-----~l~i~~~~~~d  105 (292)
                      ..+.+|++++|.|.+.|+..  ..+.|+|.  ++.+.           .......+++.+..+.     .|.|.+++.+|
T Consensus        10 ~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eD   89 (118)
T d1lo4h1          10 DLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSED   89 (118)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCc
Confidence            44678999999999988643  36789874  22211           0111223445554432     59999999999


Q ss_pred             CeEEEEEEE
Q psy15128        106 AGFFVCSAL  114 (292)
Q Consensus       106 ~g~Y~C~~~  114 (292)
                      ++.|.|...
T Consensus        90 tA~YyCAr~   98 (118)
T d1lo4h1          90 TAIYYCARG   98 (118)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEeccc
Confidence            999999754

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=7.4e-05  Score=44.25  Aligned_cols=66  Identities=11%  Similarity=0.181  Sum_probs=39.5

Q ss_pred             cCCcEEEEEEEeeeCC--CeeEEEECCeEEeeccC----CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128         50 LNGIASFQCVAEGSPL--PSVFWTQEGSQVLMFPG----NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG  118 (292)
Q Consensus        50 ~g~~~~l~C~~~~~~~--~~v~W~~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~  118 (292)
                      .++.++|.|.+.|+.+  ..|.|.++|..+.....    .......+...+.|.+..-   +...|+|.+.+...
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~---~~~~ytC~V~H~~L   85 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLG---KEQYYTCHVYHQGL   85 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEESS---TTTTCEEEEECSSC
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecCc---CCCEEEEEEEECCC
Confidence            4678999999999643  36899999987631110    0011112222335666543   34469999987643

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=1.1e-05  Score=49.78  Aligned_cols=76  Identities=12%  Similarity=0.058  Sum_probs=46.9

Q ss_pred             EeCCCceEEEeeCCCCCCC---CeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        210 VASGETALLECGPPKGQPE---PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       210 ~~~g~~~~l~C~~~~~~p~---~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      ...++.++|.|.+...+|.   ..+.|.++|..+............++.|.  ....|.|..-.......|+|.|++...
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys--~~S~L~v~~~~W~~g~~ytC~V~H~~l   92 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYR--VVSVLTVLHQDWLNGKEYKCKVSNKAL   92 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEE--EEEEEECCHHHHHTTCCEEEEEECTTS
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEE--EEEEEEEcHHHcCCCCEEEEEEEeCCC
Confidence            3457889999998444553   47889999998854332333334444443  223444544433445599999998654


Q ss_pred             c
Q psy15128        287 Q  287 (292)
Q Consensus       287 ~  287 (292)
                      .
T Consensus        93 ~   93 (105)
T d1l6xa1          93 P   93 (105)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.79  E-value=4.9e-05  Score=47.22  Aligned_cols=69  Identities=19%  Similarity=0.377  Sum_probs=44.7

Q ss_pred             cEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEe----ecc--------CCCcceeEEeee-----cEEEEccCCCC
Q psy15128         46 QKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVL----MFP--------GNAYGHLHVTQE-----GTLRIQGVQKE  104 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~----~~~--------~~~~~~~~~~~~-----~~l~i~~~~~~  104 (292)
                      ..+.+|++++|.|.+.|..  ...+.|+|.  ++.+.    ...        ....+++....+     ..|.|.+++.+
T Consensus        10 ~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~e   89 (119)
T d1qnzh_          10 ELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSD   89 (119)
T ss_dssp             CEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGG
T ss_pred             ceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCcc
Confidence            3567899999999998753  335889883  22211    111        112234444432     25999999999


Q ss_pred             CCeEEEEEEE
Q psy15128        105 DAGFFVCSAL  114 (292)
Q Consensus       105 d~g~Y~C~~~  114 (292)
                      |++.|.|...
T Consensus        90 DsAvYYCA~~   99 (119)
T d1qnzh_          90 DSAVYYCAIH   99 (119)
T ss_dssp             GCEEEEEEEC
T ss_pred             ceeEEEEEEe
Confidence            9999999653

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=1.7e-05  Score=48.71  Aligned_cols=68  Identities=12%  Similarity=0.215  Sum_probs=42.5

Q ss_pred             cCCcEEEEEEEeee-CCC-eeEEEECCeEEeeccCCC---cceeEEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         50 LNGIASFQCVAEGS-PLP-SVFWTQEGSQVLMFPGNA---YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        50 ~g~~~~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      .+..++|.|.+.++ |.. .|.|.++|..+.......   .....+...+.|.|..-.......|+|.+.+..
T Consensus        20 ~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (104)
T d1o0va1          20 FPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQG   92 (104)
T ss_dssp             CCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETT
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECC
Confidence            35578999999995 443 699999987753111000   000112233467777665556677999999874

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.79  E-value=6.8e-05  Score=46.76  Aligned_cols=69  Identities=23%  Similarity=0.480  Sum_probs=45.7

Q ss_pred             cEEecCCcEEEEEEEeeeC--CCeeEEEECC--eEEe----e-ccC-------CCcceeEEeeec-----EEEEccCCCC
Q psy15128         46 QKVGLNGIASFQCVAEGSP--LPSVFWTQEG--SQVL----M-FPG-------NAYGHLHVTQEG-----TLRIQGVQKE  104 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~~----~-~~~-------~~~~~~~~~~~~-----~l~i~~~~~~  104 (292)
                      -.+.+|++++|.|.+.|+.  ...+.|+|..  +.+.    + ..+       ...+++.+..+.     .|.|.+++.+
T Consensus         9 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~e   88 (124)
T d1zvya1           9 GSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSE   88 (124)
T ss_dssp             EECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCC
Confidence            3567899999999998864  3368898842  2111    1 111       113445554432     5999999999


Q ss_pred             CCeEEEEEEE
Q psy15128        105 DAGFFVCSAL  114 (292)
Q Consensus       105 d~g~Y~C~~~  114 (292)
                      |++.|.|...
T Consensus        89 DtAvYYCAr~   98 (124)
T d1zvya1          89 DTAIYTCGAT   98 (124)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEeec
Confidence            9999999754

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.78  E-value=0.00011  Score=46.13  Aligned_cols=70  Identities=19%  Similarity=0.457  Sum_probs=46.4

Q ss_pred             ccEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEe----ecc--------CCCcceeEEeeec-----EEEEccCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVL----MFP--------GNAYGHLHVTQEG-----TLRIQGVQK  103 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~----~~~--------~~~~~~~~~~~~~-----~l~i~~~~~  103 (292)
                      ...+.+|++++|.|.+.|+.  ...+.|+|.  |+.+.    +..        ....+++....+.     .|.|.+++.
T Consensus         9 ~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~   88 (135)
T d1ieha_           9 GGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKS   88 (135)
T ss_dssp             CCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCS
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCc
Confidence            34567899999999998864  335889873  22211    111        1123455555432     599999999


Q ss_pred             CCCeEEEEEEE
Q psy15128        104 EDAGFFVCSAL  114 (292)
Q Consensus       104 ~d~g~Y~C~~~  114 (292)
                      +|++.|+|...
T Consensus        89 eDTAvYYCAr~   99 (135)
T d1ieha_          89 EDTAVYYCAKY   99 (135)
T ss_dssp             SSCEEEEEEEB
T ss_pred             ccceeeEEEEe
Confidence            99999999754

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.78  E-value=1.9e-05  Score=50.57  Aligned_cols=83  Identities=22%  Similarity=0.378  Sum_probs=50.9

Q ss_pred             CCcEEe-CCCccEEecCCcEEEEEEEeee-C-CCeeEEEECCeEEeec----c-----CCCcceeEEeeecEEEEccCCC
Q psy15128         36 PPSFVV-RPQDQKVGLNGIASFQCVAEGS-P-LPSVFWTQEGSQVLMF----P-----GNAYGHLHVTQEGTLRIQGVQK  103 (292)
Q Consensus        36 ~p~~~~-~~~~~~~~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~----~-----~~~~~~~~~~~~~~l~i~~~~~  103 (292)
                      ||.+.+ .|....+..+..++|.|.+.++ | ...|.|+++|..+...    .     ........+...+.|.|.....
T Consensus         4 PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W   83 (127)
T d1ogae2           4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFW   83 (127)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHH
T ss_pred             CCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHh
Confidence            455444 3333344557789999999996 3 2379999998876311    0     0011122334456788877766


Q ss_pred             CCCe-EEEEEEEeCCc
Q psy15128        104 EDAG-FFVCSALSVAG  118 (292)
Q Consensus       104 ~d~g-~Y~C~~~~~~~  118 (292)
                      .+.| .|+|.+.+...
T Consensus        84 ~~~g~~ytC~V~H~~l   99 (127)
T d1ogae2          84 QNPRNHFRCQVQFYGL   99 (127)
T ss_dssp             TCTTCEEEEEEEECCB
T ss_pred             CCCCCEEEEEEEECCC
Confidence            6655 69999987543

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.78  E-value=9.4e-05  Score=44.61  Aligned_cols=70  Identities=17%  Similarity=0.199  Sum_probs=37.7

Q ss_pred             CCCceEEEeeCCCCCCCC--eEEEeE--cCeEe------ccCC---------CceEEecCCCcccccccccccccccccc
Q psy15128        212 SGETALLECGPPKGQPEP--TLHWKK--NGQFI------DLES---------SKRVSILGDPWFDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~~--~~~W~~--~g~~~------~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~  272 (292)
                      +|++++|+|.+ .|....  .+.|.+  .|+.+      ....         ..|+.+..+..   +....|.+..++.+
T Consensus         1 PG~sl~LsC~~-SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s---~~t~~L~~~sL~~e   76 (103)
T d1oari_           1 PGASVKLSCKA-SGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKP---SSTAYMQLSSLTSE   76 (103)
T ss_dssp             CCCCEEEEEEC-CSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC-------CEEEEEECCC---
T ss_pred             CCCCeEEEEEE-ECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEecccc---ccEEEeeeeecccc
Confidence            58999999998 665433  688987  23332      1111         11222222211   22346889999999


Q ss_pred             ccceeEEEEeecc
Q psy15128        273 SDDQWKLIAKNIR  285 (292)
Q Consensus       273 ~~g~y~C~a~n~~  285 (292)
                      |.+.|.|......
T Consensus        77 DTAvYYCAr~~~~   89 (103)
T d1oari_          77 DSAVYYCARMWYY   89 (103)
T ss_dssp             CCSEEEEEEEECS
T ss_pred             ccEEEEeEEECCC
Confidence            9999999865443

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.78  E-value=3.1e-05  Score=46.89  Aligned_cols=66  Identities=17%  Similarity=0.369  Sum_probs=42.5

Q ss_pred             EecCCcEEEEEEEeee--CCCeeEEEECC--eEEe-----------eccCCCcceeEEeeec-----EEEEccCCCCCCe
Q psy15128         48 VGLNGIASFQCVAEGS--PLPSVFWTQEG--SQVL-----------MFPGNAYGHLHVTQEG-----TLRIQGVQKEDAG  107 (292)
Q Consensus        48 ~~~g~~~~l~C~~~~~--~~~~v~W~~~~--~~~~-----------~~~~~~~~~~~~~~~~-----~l~i~~~~~~d~g  107 (292)
                      +.+|++++|.|.+.|+  ....+.|+|..  +.+.           .......+++....+.     .|.|.+++.+|++
T Consensus         5 vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDtA   84 (107)
T d1sjva_           5 VQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDTA   84 (107)
T ss_dssp             CCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGCS
T ss_pred             ecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccce
Confidence            5679999999999875  33467898742  2111           0111223455554432     5999999999999


Q ss_pred             EEEEEE
Q psy15128        108 FFVCSA  113 (292)
Q Consensus       108 ~Y~C~~  113 (292)
                      .|.|..
T Consensus        85 vYyCA~   90 (107)
T d1sjva_          85 VYYCYT   90 (107)
T ss_dssp             EEEEEE
T ss_pred             eeeEec
Confidence            999964

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.78  E-value=9.9e-05  Score=46.04  Aligned_cols=77  Identities=12%  Similarity=0.173  Sum_probs=45.1

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--CeEec----c-CCCceEEe-cCCCcccc---ccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQFID----L-ESSKRVSI-LGDPWFDS---RRSRSIFGSVLGALS  273 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~~~----~-~~~~~~~~-~~~~~~~~---~~~~~l~i~~~~~~~  273 (292)
                      |....+.+|++++|.|....+  ...+.|++-  |+.+.    . ........ ..+.....   .....|.|..+..+|
T Consensus         7 P~~~~~~~G~~v~l~C~~~~~--~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   84 (113)
T d1j8he1           7 SRYLVKRTGEKVFLECVQDMD--HENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQ   84 (113)
T ss_dssp             CSEEEEETTCCEEECEEESSC--CSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEEcCC--ccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCC
Confidence            456678899999999985333  357889982  22110    0 01111110 01111110   122368889999999


Q ss_pred             cceeEEEEee
Q psy15128        274 DDQWKLIAKN  283 (292)
Q Consensus       274 ~g~y~C~a~n  283 (292)
                      +|.|.|.+..
T Consensus        85 sa~YyCa~~~   94 (113)
T d1j8he1          85 TSMYLCASSS   94 (113)
T ss_dssp             CEEEEEEEEC
T ss_pred             cccEEeeEcc
Confidence            9999999864

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.78  E-value=7.4e-05  Score=46.37  Aligned_cols=71  Identities=15%  Similarity=0.393  Sum_probs=46.4

Q ss_pred             ccEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEe----ec-c-------CCCcceeEEeeec-----EEEEccCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVL----MF-P-------GNAYGHLHVTQEG-----TLRIQGVQK  103 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~----~~-~-------~~~~~~~~~~~~~-----~l~i~~~~~  103 (292)
                      ...+.+|++++|.|.+.|+.  ...+.|+|.  ++.+.    +. .       ....+++....+.     .|.|.+++.
T Consensus         9 ~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~   88 (123)
T d1mqkh_           9 GDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKS   88 (123)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeecc
Confidence            34567899999999998754  335789873  22211    11 1       1123445554432     599999999


Q ss_pred             CCCeEEEEEEEe
Q psy15128        104 EDAGFFVCSALS  115 (292)
Q Consensus       104 ~d~g~Y~C~~~~  115 (292)
                      +|++.|.|....
T Consensus        89 eDtAvYYCAr~~  100 (123)
T d1mqkh_          89 EDTAMYYCVRHE  100 (123)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CcccceeEEecC
Confidence            999999997543

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.78  E-value=3.7e-05  Score=46.26  Aligned_cols=69  Identities=16%  Similarity=0.121  Sum_probs=44.0

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN  283 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n  283 (292)
                      ...+..|++|+|.|..  ......|.++|+|.....  .........    ......+.|..+...|.|.|+|.-..
T Consensus        10 ~~~V~~G~~VTl~C~~--~~~~~~f~L~keg~~~~~--~~~~~~~~~----~~~~a~F~l~~v~~~~~G~Y~C~y~~   78 (96)
T d1nkra1          10 GPLVKSEETVILQCWS--DVMFEHFLLHREGMFNDT--LRLIGEHHD----GVSKANFSISRMTQDLAGTYRCYGSV   78 (96)
T ss_dssp             CSEEETTCCEEEEEEE--SSCCSEEEEEEESSSCEE--EEEECEEET----TEEEEEEEESSCCGGGCEEEEEEEEB
T ss_pred             CCccCCCCcEEEEECC--CCCCCEEEEEECCCcCCc--eeeeeeecC----CceEEEEEEcccCcccCeEEEEEEEc
Confidence            3467899999999984  455668999998753210  000000000    01122477889999999999997653

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.77  E-value=5.3e-05  Score=47.53  Aligned_cols=72  Identities=13%  Similarity=0.297  Sum_probs=46.8

Q ss_pred             CCccEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEe------ecc------CCCcceeEEeeec-----EEEEccC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVL------MFP------GNAYGHLHVTQEG-----TLRIQGV  101 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~------~~~------~~~~~~~~~~~~~-----~l~i~~~  101 (292)
                      +....+.+|+++.|.|.+.|+.  ...+.|+|.  ++.+.      ...      ....+++.+..+.     .|.|.++
T Consensus         6 sg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L   85 (130)
T d1rhhb1           6 SGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNL   85 (130)
T ss_dssp             CCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeecc
Confidence            3445577899999999998754  335788873  22221      011      1112344444432     5899999


Q ss_pred             CCCCCeEEEEEEE
Q psy15128        102 QKEDAGFFVCSAL  114 (292)
Q Consensus       102 ~~~d~g~Y~C~~~  114 (292)
                      +.+|++.|.|...
T Consensus        86 ~~eDtAvYyCAr~   98 (130)
T d1rhhb1          86 RSDDTAVYYCARD   98 (130)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCCcEEEEEEee
Confidence            9999999999754

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.77  E-value=1.5e-05  Score=48.46  Aligned_cols=67  Identities=12%  Similarity=0.094  Sum_probs=42.1

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128        207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN  283 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n  283 (292)
                      ...+..|++|+|.|..  ..+...|.|+|+|......  ........      ....+.+..+...|+|+|+|.-..
T Consensus        14 ~~~V~~G~~VTL~C~~--~~~~~~f~L~k~g~~~~~~--~~~~~~~~------~~~~f~~~~~~~~~~G~Y~C~y~~   80 (99)
T d1nkra2          14 GPTVLAGENVTLSCSS--RSSYDMYHLSREGEAHERR--LPAGPKVN------GTFQADFPLGPATHGGTYRCFGSF   80 (99)
T ss_dssp             CSEECTTCEEEEEEEE--SSCCSEEEEEETTCSSCEE--EECEEEET------TEEEEEEEEEECCSCEEEEEEEEE
T ss_pred             CCcccCCCeEEEEECC--CCCccEEEEEECCCccccE--EEccccCC------ccEEEEEeccccccCEEEEEEeec
Confidence            3467899999999984  4566789999988543100  00000001      011345667778899999997553

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=2.9e-05  Score=46.74  Aligned_cols=66  Identities=12%  Similarity=0.170  Sum_probs=38.7

Q ss_pred             cCCcEEEEEEEeeeCC--CeeEEEECCeEEeeccCC----CcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128         50 LNGIASFQCVAEGSPL--PSVFWTQEGSQVLMFPGN----AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG  118 (292)
Q Consensus        50 ~g~~~~l~C~~~~~~~--~~v~W~~~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~  118 (292)
                      .++.++|.|.+.|+.+  ..++|.++|..+......    ..+.........|.+.   ..+...|+|++.+...
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~---~~~~~~ytC~V~H~~L   85 (95)
T d1k5na1          14 SDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVP---SGEEQRYTCHVQHEGL   85 (95)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEE---TTCGGGEEEEEECTTC
T ss_pred             CCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEE---cCCCCEEEEEEEECcC
Confidence            3567999999999743  368999998765321100    0011111222244443   3445679999998654

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.77  E-value=9e-05  Score=46.20  Aligned_cols=70  Identities=14%  Similarity=0.365  Sum_probs=46.0

Q ss_pred             CccEEecCCcEEEEEEEeeeCCC--eeEEEEC--CeEEe----ec-cC-------CCcceeEEeeec-----EEEEccCC
Q psy15128         44 QDQKVGLNGIASFQCVAEGSPLP--SVFWTQE--GSQVL----MF-PG-------NAYGHLHVTQEG-----TLRIQGVQ  102 (292)
Q Consensus        44 ~~~~~~~g~~~~l~C~~~~~~~~--~v~W~~~--~~~~~----~~-~~-------~~~~~~~~~~~~-----~l~i~~~~  102 (292)
                      ....+.+|+++.|.|.+.|+...  .+.|+|.  ++.+.    +. .+       ...+++.+..+.     .|.|.+++
T Consensus         7 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~   86 (126)
T d1lmka1           7 GTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLT   86 (126)
T ss_dssp             CCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccC
Confidence            34457789999999999886433  5778873  22221    11 11       113455554332     69999999


Q ss_pred             CCCCeEEEEEE
Q psy15128        103 KEDAGFFVCSA  113 (292)
Q Consensus       103 ~~d~g~Y~C~~  113 (292)
                      .+|++.|.|..
T Consensus        87 ~eDTAvYYCAr   97 (126)
T d1lmka1          87 SEDSAVYYCAR   97 (126)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEEee
Confidence            99999999964

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.77  E-value=9.8e-05  Score=46.04  Aligned_cols=71  Identities=11%  Similarity=0.320  Sum_probs=46.6

Q ss_pred             CCccEEecCCcEEEEEEEeeeCC--CeeEEEEC--CeEEe----ec--------cCCCcceeEEeeec-----EEEEccC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSPL--PSVFWTQE--GSQVL----MF--------PGNAYGHLHVTQEG-----TLRIQGV  101 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~~--~~v~W~~~--~~~~~----~~--------~~~~~~~~~~~~~~-----~l~i~~~  101 (292)
                      +....+.+|++++|.|.+.|+..  ..+.|+|.  ++.+.    +.        .....+++.+..+.     .|.|.++
T Consensus         7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L   86 (127)
T d1n0xh1           7 SGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSL   86 (127)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEcc
Confidence            33455778999999999988543  35788873  22211    01        11123455555432     5999999


Q ss_pred             CCCCCeEEEEEE
Q psy15128        102 QKEDAGFFVCSA  113 (292)
Q Consensus       102 ~~~d~g~Y~C~~  113 (292)
                      +.+|++.|.|.-
T Consensus        87 ~~eDtAvYYCAR   98 (127)
T d1n0xh1          87 RSADTAVYYCAR   98 (127)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCCceEEEEEe
Confidence            999999999963

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=3e-05  Score=46.76  Aligned_cols=66  Identities=8%  Similarity=0.043  Sum_probs=43.7

Q ss_pred             eEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128        208 TRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN  283 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n  283 (292)
                      ..|..|++|+|.|..  ..+...|.++|+|.......        ...........+.|..+...|+|.|+|.-..
T Consensus        13 ~~V~~G~~VTL~C~~--~~~~~~f~L~keg~~~~~~~--------~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1          13 SVITQGSPVTLRCQG--GQETQEYRLYREKKTAPWIT--------RIPQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             SEEETTCCEEEEEEC--CTTCCCEEEEESSSCCHHHH--------TSCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CccCCCCcEEEEEeC--CCCCCEEEEEECCCCcccEE--------EccCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            457899999999984  45566888899875321000        0000011223577889999999999998753

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.76  E-value=7.6e-05  Score=46.43  Aligned_cols=70  Identities=17%  Similarity=0.396  Sum_probs=45.4

Q ss_pred             ccEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEe----eccC--------CCcceeEEeee-----cEEEEccCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVL----MFPG--------NAYGHLHVTQE-----GTLRIQGVQK  103 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~----~~~~--------~~~~~~~~~~~-----~~l~i~~~~~  103 (292)
                      ...+.+|++++|.|.+.|+.  ...+.|+|.  ++.+.    ....        ...+++....+     ..|.|.+++.
T Consensus         9 ~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~   88 (121)
T d1j05b_           9 AELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTS   88 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCc
Confidence            44577899999999998753  336889874  22111    1111        11234444432     2599999999


Q ss_pred             CCCeEEEEEEE
Q psy15128        104 EDAGFFVCSAL  114 (292)
Q Consensus       104 ~d~g~Y~C~~~  114 (292)
                      +|++.|.|...
T Consensus        89 eDtAvYYCAr~   99 (121)
T d1j05b_          89 EDTAVYYCAPF   99 (121)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEeEee
Confidence            99999999754

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=8.5e-05  Score=46.75  Aligned_cols=70  Identities=9%  Similarity=0.041  Sum_probs=39.9

Q ss_pred             cEEecCCcEEEEEEEeeeCCC--e-eEEEECCe---EEe-e-ccC-CC-----cc--eeEEee---ecEEEEccCCCCCC
Q psy15128         46 QKVGLNGIASFQCVAEGSPLP--S-VFWTQEGS---QVL-M-FPG-NA-----YG--HLHVTQ---EGTLRIQGVQKEDA  106 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~~~--~-v~W~~~~~---~~~-~-~~~-~~-----~~--~~~~~~---~~~l~i~~~~~~d~  106 (292)
                      ..+.+|+.++|.|...+....  . +.|++...   +.. . ... ..     ..  +.....   ...|+|.+++.+|+
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   89 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQT   89 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGC
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccC
Confidence            346679999999998654322  2 33555321   111 1 110 00     01  111111   22699999999999


Q ss_pred             eEEEEEEEe
Q psy15128        107 GFFVCSALS  115 (292)
Q Consensus       107 g~Y~C~~~~  115 (292)
                      |.|.|.+..
T Consensus        90 avYyCa~~~   98 (118)
T d1yjdc1          90 DIYFCKIEV   98 (118)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEec
Confidence            999998753

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.76  E-value=0.0001  Score=45.86  Aligned_cols=69  Identities=13%  Similarity=0.375  Sum_probs=45.8

Q ss_pred             ccEEecCCcEEEEEEEeeeCC--CeeEEEEC--CeEEe----ecc--------CCCcceeEEeeec-----EEEEccCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSPL--PSVFWTQE--GSQVL----MFP--------GNAYGHLHVTQEG-----TLRIQGVQK  103 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~--~~v~W~~~--~~~~~----~~~--------~~~~~~~~~~~~~-----~l~i~~~~~  103 (292)
                      ...+.+|+++.|.|.+.|+..  ..+.|+|.  ++.+.    +..        ....+++.+..+.     .|.|.+++.
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~   88 (124)
T d2b1hh1           9 AEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKP   88 (124)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeecccc
Confidence            445678999999999988543  35788873  22211    111        1123455555433     599999999


Q ss_pred             CCCeEEEEEE
Q psy15128        104 EDAGFFVCSA  113 (292)
Q Consensus       104 ~d~g~Y~C~~  113 (292)
                      +|++.|.|..
T Consensus        89 eDTA~YYCAR   98 (124)
T d2b1hh1          89 SDTALYYCAR   98 (124)
T ss_dssp             GGCEEEEEEE
T ss_pred             ccceEEEEee
Confidence            9999999954

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.76  E-value=1.3e-05  Score=48.38  Aligned_cols=66  Identities=17%  Similarity=0.195  Sum_probs=39.6

Q ss_pred             cCCcEEEEEEEeee-CCC-eeEEEECCeEEeeccCC---CcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128         50 LNGIASFQCVAEGS-PLP-SVFWTQEGSQVLMFPGN---AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG  118 (292)
Q Consensus        50 ~g~~~~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~  118 (292)
                      .++.++|.|.+.|+ |.. .+.|++++..+......   ......+...+.|.+..   ++...|+|.+.+...
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~sL   85 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVAD---GEAAGLSCRVKHSSL   85 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEG---GGCTTEEEEEEEGGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeC---ccCCEEEEEEEeCCC
Confidence            35679999999996 544 79999988654211100   01111222233566654   445579999998654

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.76  E-value=7.9e-05  Score=45.97  Aligned_cols=70  Identities=17%  Similarity=0.383  Sum_probs=45.9

Q ss_pred             ccEEecCCcEEEEEEEeeeCC--CeeEEEEC--CeEEe----ecc--------CCCcceeEEeeec-----EEEEccCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSPL--PSVFWTQE--GSQVL----MFP--------GNAYGHLHVTQEG-----TLRIQGVQK  103 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~--~~v~W~~~--~~~~~----~~~--------~~~~~~~~~~~~~-----~l~i~~~~~  103 (292)
                      ...+.+|+++.|.|.+.|+..  ..+.|+|.  ++.+.    +..        ....+++.+..+.     .|.|.+++.
T Consensus         9 ~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~   88 (120)
T d1ad9b1           9 AEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRS   88 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCC
Confidence            445778999999999988543  35788873  22221    011        1123444444332     589999999


Q ss_pred             CCCeEEEEEEE
Q psy15128        104 EDAGFFVCSAL  114 (292)
Q Consensus       104 ~d~g~Y~C~~~  114 (292)
                      +|++.|.|...
T Consensus        89 eDTAvYYCAr~   99 (120)
T d1ad9b1          89 EDTAFYFCARE   99 (120)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEEEc
Confidence            99999999653

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=1.4e-05  Score=48.24  Aligned_cols=68  Identities=16%  Similarity=0.263  Sum_probs=39.9

Q ss_pred             CCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCc-eEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        213 GETALLECGPPKGQPEP-TLHWKKNGQFIDLESSK-RVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      +..++|.|.|.+.+|.. .++|.+||+.+...... .....+++.+..  ...|.   +...+...|+|.++...
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~--~s~l~---v~~~~~~~ytC~V~H~~   84 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQK--WAAVV---VPSGEEQRYTCHVQHEG   84 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEE--EEEEE---EETTCGGGEEEEEECTT
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEE--EEEEE---EEcCCCCEEEEEEEECc
Confidence            56789999994445543 88999999988632211 122223333321  12222   23344558999998754

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=1.1e-05  Score=50.05  Aligned_cols=72  Identities=15%  Similarity=0.107  Sum_probs=41.8

Q ss_pred             CCceEEEeeCCCCCCC-CeEEEeEcCeEeccCCCceEEe--cCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        213 GETALLECGPPKGQPE-PTLHWKKNGQFIDLESSKRVSI--LGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      +..++|.|.|.+.+|. ..|+|.+||+.+..........  ..++.|.  ....|.+..-.......|+|.|.....
T Consensus        20 ~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys--~~S~L~v~~~~W~~~~~ytC~V~H~~~   94 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYS--LSSTLTLSKADYEKHKVYACEVTHQGL   94 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEE--EEEEEEEEHHHHTTCCEEEEEEECTTC
T ss_pred             CCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEE--EEEEEEECHHHhCCCCEEEEEEEECCC
Confidence            5678999999555665 4899999998774211111111  1233333  223444443333344489999998653

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.75  E-value=0.0001  Score=45.48  Aligned_cols=69  Identities=16%  Similarity=0.398  Sum_probs=45.8

Q ss_pred             cEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEee------c--------cCCCcceeEEeeec-----EEEEccCC
Q psy15128         46 QKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVLM------F--------PGNAYGHLHVTQEG-----TLRIQGVQ  102 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~~------~--------~~~~~~~~~~~~~~-----~l~i~~~~  102 (292)
                      ..+.+|++++|.|.+.|+.  ...+.|+|.  ++.+..      .        .....+++....+.     .|.|.+++
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~   89 (120)
T d1dlfh_          10 GLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLR   89 (120)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeecc
Confidence            3467899999999998763  346889873  332210      0        01112355554432     59999999


Q ss_pred             CCCCeEEEEEEE
Q psy15128        103 KEDAGFFVCSAL  114 (292)
Q Consensus       103 ~~d~g~Y~C~~~  114 (292)
                      .+|++.|.|...
T Consensus        90 ~eDtAvYYCA~~  101 (120)
T d1dlfh_          90 AEDTGIYYCTGI  101 (120)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCCceEEEeeEe
Confidence            999999999654

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.74  E-value=6.1e-05  Score=46.51  Aligned_cols=70  Identities=19%  Similarity=0.385  Sum_probs=45.6

Q ss_pred             ccEEecCCcEEEEEEEeeeCCC---eeEEEEC--CeEEe----ecc-------CCCcceeEEeeec-----EEEEccCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSPLP---SVFWTQE--GSQVL----MFP-------GNAYGHLHVTQEG-----TLRIQGVQK  103 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~~---~v~W~~~--~~~~~----~~~-------~~~~~~~~~~~~~-----~l~i~~~~~  103 (292)
                      ...+.+|++++|.|.+.|+...   .+.|+|.  ++.+.    ...       ....+++....+.     .|.|.+++.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~   88 (119)
T d1ncwh1           9 PGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTT   88 (119)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeecccccccc
Confidence            3457789999999999986542   3678873  33221    011       1112344444332     599999999


Q ss_pred             CCCeEEEEEEE
Q psy15128        104 EDAGFFVCSAL  114 (292)
Q Consensus       104 ~d~g~Y~C~~~  114 (292)
                      +|++.|.|...
T Consensus        89 eDTAvYYCAr~   99 (119)
T d1ncwh1          89 EDTATYYCAGL   99 (119)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCceEEEEeEe
Confidence            99999999644

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.74  E-value=7.6e-05  Score=46.52  Aligned_cols=70  Identities=19%  Similarity=0.362  Sum_probs=44.5

Q ss_pred             ccEEecCCcEEEEEEEeeeCC----CeeEEEEC--CeEEe----e-ccC------CCcceeEEeeec-----EEEEccCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSPL----PSVFWTQE--GSQVL----M-FPG------NAYGHLHVTQEG-----TLRIQGVQ  102 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~----~~v~W~~~--~~~~~----~-~~~------~~~~~~~~~~~~-----~l~i~~~~  102 (292)
                      ...+.+|++++|.|.+.|+..    ..+.|+|.  ++.+.    . ..+      ...+++....+.     .|.|.+++
T Consensus         9 ~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~   88 (123)
T d1r0ah1           9 PGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVE   88 (123)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecc
Confidence            345678999999999987532    24679873  22111    0 111      112444444332     59999999


Q ss_pred             CCCCeEEEEEEE
Q psy15128        103 KEDAGFFVCSAL  114 (292)
Q Consensus       103 ~~d~g~Y~C~~~  114 (292)
                      .+|++.|.|...
T Consensus        89 ~eDsAvYyCAr~  100 (123)
T d1r0ah1          89 TADTAIYYCAQS  100 (123)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceEEeeccc
Confidence            999999999743

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=3.4e-05  Score=44.01  Aligned_cols=62  Identities=15%  Similarity=0.246  Sum_probs=41.2

Q ss_pred             eCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccc-cccceeEEEEee
Q psy15128        211 ASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGA-LSDDQWKLIAKN  283 (292)
Q Consensus       211 ~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~~~g~y~C~a~n  283 (292)
                      ..|.+|.|+|.- .  +...+.|.+++..+....+........        ..|.+...+. +++|-|.|.+..
T Consensus         8 ISGTtV~LTCP~-~--~~~~i~W~~n~~~~~~~~~~~~~~~~~--------~~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_           8 ISGTTVILTCPQ-Y--PGSEILWQHNDKNIGGDEDDKNIGSDE--------DHLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             EETTEEEEECSS-C--TTSCEEEEETTEEESSSCSCTTEEEET--------TEEEETTCCHHHHCEEEEEEETT
T ss_pred             EeCCEEEEECCC-C--CCCceeeeeccccccCCCccccccccc--------ceEEecccCccccCceEEEEcCC
Confidence            458999999973 2  346799999998886433322111111        1355666666 689999999853

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.73  E-value=7e-05  Score=47.41  Aligned_cols=76  Identities=13%  Similarity=0.183  Sum_probs=44.7

Q ss_pred             ceEEeCCCceEEEeeCCCCC--CCCeEEEeEc--CeE---e-ccCCCceEEecC---CCcccc-----cccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQ--PEPTLHWKKN--GQF---I-DLESSKRVSILG---DPWFDS-----RRSRSIFGSVLG  270 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~--p~~~~~W~~~--g~~---~-~~~~~~~~~~~~---~~~~~~-----~~~~~l~i~~~~  270 (292)
                      .+...+|++++|+|.+ .+.  ....+.|++-  |+.   | ............   .+.+..     .....|.|..+.
T Consensus        10 s~t~~~g~t~~LsC~~-sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~   88 (123)
T d1hxmb1          10 SSTKTLSKTARLECVV-SGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVE   88 (123)
T ss_dssp             EEEEETTCCEEEEEEE-ESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCC
T ss_pred             eEEeCCCCCEEEEEEE-cCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccc
Confidence            4667889999999997 443  2346899982  221   1 111111111110   111111     122358899999


Q ss_pred             ccccceeEEEEee
Q psy15128        271 ALSDDQWKLIAKN  283 (292)
Q Consensus       271 ~~~~g~y~C~a~n  283 (292)
                      .+|++.|.|.+..
T Consensus        89 ~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          89 KQDIATYYCALWE  101 (123)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccCcEEEEeeeC
Confidence            9999999998754

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.73  E-value=6.7e-05  Score=46.42  Aligned_cols=73  Identities=15%  Similarity=0.214  Sum_probs=44.5

Q ss_pred             eEEeCCCceEEEeeCCCCCCC--CeEEEeEc--CeEe------ccCCC--------ceEEecCCCccccccccccccccc
Q psy15128        208 TRVASGETALLECGPPKGQPE--PTLHWKKN--GQFI------DLESS--------KRVSILGDPWFDSRRSRSIFGSVL  269 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~--g~~~------~~~~~--------~~~~~~~~~~~~~~~~~~l~i~~~  269 (292)
                      ..+++|++++|+|.+ .|...  -.+.|++.  |+-+      ..+..        .|+.+..+.   .+....|.|..+
T Consensus         9 ~~vkPg~sl~LsC~~-SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~---s~~~~~L~i~~L   84 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAA-SGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGN---AKNTAYLQMDSL   84 (119)
T ss_dssp             EEECTTCCEEEEEEE-ESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECS---STTEEEEEECSC
T ss_pred             ceECCCCCeEEEEEE-cCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEeccc---CCcceecccccC
Confidence            467899999999998 66443  36789873  3222      11111        122222111   122336888999


Q ss_pred             cccccceeEEEEeec
Q psy15128        270 GALSDDQWKLIAKNI  284 (292)
Q Consensus       270 ~~~~~g~y~C~a~n~  284 (292)
                      +.+|+..|.|.+...
T Consensus        85 ~~eDtA~YYCAr~~~   99 (119)
T d1kxvc_          85 KPDDTAMYYCKPSLR   99 (119)
T ss_dssp             CGGGCEEEEEEEEES
T ss_pred             CcCCcceEeeeeccc
Confidence            999999999976543

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=9.4e-06  Score=49.90  Aligned_cols=74  Identities=7%  Similarity=0.076  Sum_probs=45.1

Q ss_pred             EeCCCceEEEeeCCCCCCC---CeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128        210 VASGETALLECGPPKGQPE---PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR  285 (292)
Q Consensus       210 ~~~g~~~~l~C~~~~~~p~---~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~  285 (292)
                      +..+..++|.|.|...+|.   ..+.|.+++...............++.+..  ...|.+..-.......|+|.|.+..
T Consensus        13 l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~--~S~L~v~~~~w~~g~~~tC~V~H~~   89 (103)
T d1fp5a1          13 LFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTV--TSTLPVGTRDWIEGETYQCRVTHPH   89 (103)
T ss_dssp             HHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEE--EEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             HhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEE--EEEEEEcHHHhCCCCeEEEEEEECC
Confidence            4567889999999444564   377888888766433333334444444432  2344444333334559999999864

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.72  E-value=8.1e-05  Score=45.04  Aligned_cols=70  Identities=17%  Similarity=0.290  Sum_probs=41.4

Q ss_pred             EEeCCCceEEEeeCCCCCC--CCeEEEeEc--CeEe------ccCC--------CceEEecCCCcccccccccccccccc
Q psy15128        209 RVASGETALLECGPPKGQP--EPTLHWKKN--GQFI------DLES--------SKRVSILGDPWFDSRRSRSIFGSVLG  270 (292)
Q Consensus       209 ~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--g~~~------~~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~  270 (292)
                      .+++|++++|+|.+ .|..  .-.+.|.+.  |+-+      ....        ..|+.+..+.   .+....|.|..++
T Consensus         4 lvkPG~sl~LsC~~-SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~---s~n~~~L~i~~l~   79 (107)
T d1sjva_           4 LVQAGESLKLSCAA-SGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDN---AKKTVYLEMNSLE   79 (107)
T ss_dssp             CCCTTCCEEEEECC-CC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECT---TTCCEEEEECSCC
T ss_pred             EecCCCCcEEEEEE-CCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCC---ceeEEEEeecCCC
Confidence            46789999999998 6532  335788872  3222      1111        1122222211   1223468889999


Q ss_pred             ccccceeEEEEe
Q psy15128        271 ALSDDQWKLIAK  282 (292)
Q Consensus       271 ~~~~g~y~C~a~  282 (292)
                      .+|.+.|.|...
T Consensus        80 ~eDtAvYyCA~~   91 (107)
T d1sjva_          80 PEDTAVYYCYTH   91 (107)
T ss_dssp             GGGCSEEEEEEC
T ss_pred             cccceeeeEecc
Confidence            999999999653

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.72  E-value=3.8e-05  Score=47.25  Aligned_cols=72  Identities=15%  Similarity=0.169  Sum_probs=42.1

Q ss_pred             eEEeCCCceEEEeeCCCCCCC--CeEEEeEc--CeE------eccCCCc-eEEecCCCcccc-----ccccccccccccc
Q psy15128        208 TRVASGETALLECGPPKGQPE--PTLHWKKN--GQF------IDLESSK-RVSILGDPWFDS-----RRSRSIFGSVLGA  271 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~--g~~------~~~~~~~-~~~~~~~~~~~~-----~~~~~l~i~~~~~  271 (292)
                      ..+++|+++.|+|.+ .|...  -.+.|.+.  |+-      |....+. .+...-.+.+..     .....|.+..++.
T Consensus        10 ~~~kPG~sl~LsC~~-SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~   88 (118)
T d1nlbh1          10 ELKKPGETVKISCKA-SGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKN   88 (118)
T ss_dssp             EEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEE-cCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeeccc
Confidence            457899999999998 66442  36888872  332      2111111 111111111111     2233578889999


Q ss_pred             cccceeEEE
Q psy15128        272 LSDDQWKLI  280 (292)
Q Consensus       272 ~~~g~y~C~  280 (292)
                      +|.+.|+|.
T Consensus        89 eDtAvYYCA   97 (118)
T d1nlbh1          89 EDTATYFCA   97 (118)
T ss_dssp             GGCEEEEEE
T ss_pred             CcceEEEEe
Confidence            999999994

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.71  E-value=9.3e-05  Score=46.30  Aligned_cols=72  Identities=11%  Similarity=0.228  Sum_probs=46.0

Q ss_pred             CCccEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEe----ec-c-------CCCcceeEEeeec-----EEEEccC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVL----MF-P-------GNAYGHLHVTQEG-----TLRIQGV  101 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~----~~-~-------~~~~~~~~~~~~~-----~l~i~~~  101 (292)
                      +....+.+|++++|.|.+.|+.  ...+.|+|.  ++.+.    +. .       ....+++....+.     .|.|.++
T Consensus         7 sg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL   86 (125)
T d1rihh1           7 SGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSL   86 (125)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeecc
Confidence            3345577899999999998754  335888873  22221    00 0       0112344443332     5999999


Q ss_pred             CCCCCeEEEEEEE
Q psy15128        102 QKEDAGFFVCSAL  114 (292)
Q Consensus       102 ~~~d~g~Y~C~~~  114 (292)
                      +.+|++.|.|...
T Consensus        87 ~~eDtAvYYCAR~   99 (125)
T d1rihh1          87 TSEDSAVYYCARE   99 (125)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CcccceEEEEeee
Confidence            9999999999754

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.70  E-value=7e-05  Score=47.40  Aligned_cols=70  Identities=17%  Similarity=0.315  Sum_probs=44.9

Q ss_pred             ccEEecCCcEEEEEEEeeeCC----CeeEEEECC--eEEe----ec-cC------CCcceeEEeeec-----EEEEccCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSPL----PSVFWTQEG--SQVL----MF-PG------NAYGHLHVTQEG-----TLRIQGVQ  102 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~----~~v~W~~~~--~~~~----~~-~~------~~~~~~~~~~~~-----~l~i~~~~  102 (292)
                      ...+.+|++++|.|.+.|+..    ..+.|+|..  +.+.    .. .+      ...+++....+.     .|.|.+++
T Consensus         9 ~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~   88 (132)
T d1tjgh1           9 PPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVS   88 (132)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCC
Confidence            345778999999999987532    247898741  1110    00 11      112344443322     59999999


Q ss_pred             CCCCeEEEEEEE
Q psy15128        103 KEDAGFFVCSAL  114 (292)
Q Consensus       103 ~~d~g~Y~C~~~  114 (292)
                      .+|++.|.|...
T Consensus        89 ~eDtAvYYCAr~  100 (132)
T d1tjgh1          89 PVDTATYFCAHR  100 (132)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceEEEEEEe
Confidence            999999999754

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.70  E-value=4.3e-05  Score=44.84  Aligned_cols=67  Identities=4%  Similarity=-0.007  Sum_probs=42.5

Q ss_pred             CCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128        213 GETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      ...++|.|.|.+.+|.. .+.|.++|..+.  .........++.|..       ++.+.......|+|.+.......
T Consensus        13 ~~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~--~~~~~~~~~~gtys~-------~s~~~~~~~~~yTC~V~H~~~~~   80 (86)
T d1hxma2          13 KNGTNVACLVKEFYPKDIRINLVSSKKITE--FDPAIVISPSGKYNA-------VKLGKYEDSNSVTCSVQHDNKTV   80 (86)
T ss_dssp             EETTEEEEEEESCBSSCCEEEEECSSEEEE--CCCEEEECTTSSEEE-------EEEEEETTTTTCEEEEEETTEEE
T ss_pred             CCCCEEEEEEeeEECCCCEEEEEECCEEcc--CcEEeeeccCCcEEE-------EEEEecCCCCEEEEEEEECCcce
Confidence            35578999995555544 889999998875  223344455554432       22233345568999999875443

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.70  E-value=7.4e-05  Score=44.82  Aligned_cols=64  Identities=20%  Similarity=0.271  Sum_probs=38.3

Q ss_pred             CCcEEEEEEEeee-CC-CeeEEEECCeEEeeccCC-----CcceeEEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128         51 NGIASFQCVAEGS-PL-PSVFWTQEGSQVLMFPGN-----AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA  117 (292)
Q Consensus        51 g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~  117 (292)
                      ++.++|.|.+.++ |. ..+.|.+++..+......     ......+.....|.+..   .+...|+|.+.+..
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~---~~~~~ytC~V~H~~   85 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQ---GEEQRFTCYMEHSG   85 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEET---TCGGGEEEEEEETT
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEECC
Confidence            5678999999996 43 379999998766321100     00111222233455543   34457999998864

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.69  E-value=0.00011  Score=45.76  Aligned_cols=69  Identities=16%  Similarity=0.345  Sum_probs=46.2

Q ss_pred             cEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEe------ec------cCCCcceeEEeeec-----EEEEccCCCC
Q psy15128         46 QKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVL------MF------PGNAYGHLHVTQEG-----TLRIQGVQKE  104 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~------~~------~~~~~~~~~~~~~~-----~l~i~~~~~~  104 (292)
                      -.+.+|++++|.|.+.|..  ...+.|+|.  ++.+.      ..      .....+++.+..+.     .|.|.+++.+
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~e   89 (125)
T d1op3h1          10 GLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVE   89 (125)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCc
Confidence            4577899999999998753  336889873  22221      01      11223455555432     5899999999


Q ss_pred             CCeEEEEEEE
Q psy15128        105 DAGFFVCSAL  114 (292)
Q Consensus       105 d~g~Y~C~~~  114 (292)
                      |++.|.|...
T Consensus        90 DTAvYYCAr~   99 (125)
T d1op3h1          90 DTAIYYCARK   99 (125)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceeEeEeec
Confidence            9999999754

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.68  E-value=2.2e-05  Score=47.22  Aligned_cols=69  Identities=13%  Similarity=0.222  Sum_probs=40.6

Q ss_pred             CCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCc--eEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        213 GETALLECGPPKGQPEP-TLHWKKNGQFIDLESSK--RVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      +..++|.|.|.+.+|.. .++|.++|+.+......  ......++.|...  ..|.   +...+...|+|.++...-
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~--s~l~---v~~~~~~~ytC~V~H~~~   86 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTW--VATR---ICQGEEQRFTCYMEHSGN   86 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEE--EEEE---EETTCGGGEEEEEEETTE
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEE--EEEE---EcCCCCCEEEEEEEECCC
Confidence            35689999995445544 99999999988533222  1222333333322  1222   333444579999987543

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.68  E-value=0.00012  Score=45.77  Aligned_cols=69  Identities=16%  Similarity=0.358  Sum_probs=45.6

Q ss_pred             cEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEe------ecc------CCCcceeEEeeec-----EEEEccCCCC
Q psy15128         46 QKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVL------MFP------GNAYGHLHVTQEG-----TLRIQGVQKE  104 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~------~~~------~~~~~~~~~~~~~-----~l~i~~~~~~  104 (292)
                      ..+.+|+++.|.|.+.|+.  ...+.|+|.  ++.+.      ...      ....+++.+..+.     .|.|.+++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~e   89 (127)
T d2fx7h1          10 EVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPE   89 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCcc
Confidence            4466799999999998853  335789873  22221      011      1113455555432     5999999999


Q ss_pred             CCeEEEEEEE
Q psy15128        105 DAGFFVCSAL  114 (292)
Q Consensus       105 d~g~Y~C~~~  114 (292)
                      |++.|.|...
T Consensus        90 DTavYYCAR~   99 (127)
T d2fx7h1          90 DTAVYYCARE   99 (127)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeec
Confidence            9999999754

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=6.2e-05  Score=46.08  Aligned_cols=72  Identities=15%  Similarity=0.272  Sum_probs=43.0

Q ss_pred             cCCcEEEEEEEeee-CC-CeeEEEECCeEEe--eccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeE
Q psy15128         50 LNGIASFQCVAEGS-PL-PSVFWTQEGSQVL--MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV  122 (292)
Q Consensus        50 ~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~  122 (292)
                      .++.++|.|.+.++ |. ..|.|.+++....  ..+........+...+.|.|..-... ...|+|.+.+.......
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t~~~~~~~~gtys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~v   94 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLG-TQTYICNVNHKPSNTKV   94 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGG-TCCCEEEEEEGGGTEEE
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEECCCeECCCCCEEEEEEEEECccccC-CCeEEEEEEeCCCCEEE
Confidence            46789999999986 32 3799987764211  11111111122333456777766553 45799999987665443

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.68  E-value=4e-05  Score=46.95  Aligned_cols=71  Identities=14%  Similarity=0.060  Sum_probs=43.6

Q ss_pred             cCCcEEEEEEEeee-CC---CeeEEEECCeEEeeccCC---CcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         50 LNGIASFQCVAEGS-PL---PSVFWTQEGSQVLMFPGN---AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        50 ~g~~~~l~C~~~~~-~~---~~v~W~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      .+..++|.|.+.++ |.   ..+.|.+++..+......   ......+...+.|.|..........|+|.+.+.....
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~l~~   92 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA   92 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCCCCC
Confidence            46778999999885 43   478899988765321100   0111123334466666555555667999999865443

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.68  E-value=3.2e-05  Score=46.76  Aligned_cols=70  Identities=11%  Similarity=0.148  Sum_probs=40.8

Q ss_pred             CCceEEEeeCCCCCCCC-eEEEeEcCeEecc-----CCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        213 GETALLECGPPKGQPEP-TLHWKKNGQFIDL-----ESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       213 g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      ...++|.|.|.+.+|.. .|.|.+||+.+..     ..........++.|....  .|.   +...+...|+|.+.....
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s--~l~---v~~~~~~~ytC~V~H~s~   88 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHI--DVY---VDGGLEHVYSCRVKGIAT   88 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEE--EEE---ECTTCGGGEEEEEEEGGG
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEE--EEE---ECCCCCCEEEEEEEeCCC
Confidence            34789999995445544 8999999876531     111122334455544321  222   334455689999986544


Q ss_pred             c
Q psy15128        287 Q  287 (292)
Q Consensus       287 ~  287 (292)
                      .
T Consensus        89 ~   89 (98)
T d1u58a1          89 G   89 (98)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=6.9e-05  Score=47.19  Aligned_cols=80  Identities=13%  Similarity=0.080  Sum_probs=46.4

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCC--eEEEeEc--CeE---e--ccCCCceEEecCCCc---ccccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEP--TLHWKKN--GQF---I--DLESSKRVSILGDPW---FDSRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~--g~~---~--~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~  272 (292)
                      |..+.+.+|+.++|.|....+....  .+.|++.  |+.   +  ....+..........   ........|.|..+..+
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAM   85 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGG
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccC
Confidence            3456778999999999963333222  5889983  221   1  001111111111111   01122346999999999


Q ss_pred             ccceeEEEEeec
Q psy15128        273 SDDQWKLIAKNI  284 (292)
Q Consensus       273 ~~g~y~C~a~n~  284 (292)
                      |+|.|.|.+...
T Consensus        86 Dsa~YyCa~~~~   97 (118)
T d1i8lc_          86 DTGLYICKVELM   97 (118)
T ss_dssp             GCEEEEEEEEEE
T ss_pred             CCEEEEEeEecc
Confidence            999999988653

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.67  E-value=0.00016  Score=44.89  Aligned_cols=69  Identities=16%  Similarity=0.405  Sum_probs=45.5

Q ss_pred             cEEecCCcEEEEEEEeeeCC--CeeEEEEC--CeEEe----ec-c-------CCCcceeEEeeec-----EEEEccCCCC
Q psy15128         46 QKVGLNGIASFQCVAEGSPL--PSVFWTQE--GSQVL----MF-P-------GNAYGHLHVTQEG-----TLRIQGVQKE  104 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~~--~~v~W~~~--~~~~~----~~-~-------~~~~~~~~~~~~~-----~l~i~~~~~~  104 (292)
                      ..+.+|+++.|.|.+.|+..  ..+.|+|.  ++.+.    +. .       ....+++....+.     .|.|.+++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~e   89 (122)
T d1bz7b1          10 GLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSE   89 (122)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeeccc
Confidence            34678999999999988643  35789883  22221    11 1       1112455544332     5999999999


Q ss_pred             CCeEEEEEEE
Q psy15128        105 DAGFFVCSAL  114 (292)
Q Consensus       105 d~g~Y~C~~~  114 (292)
                      |++.|.|...
T Consensus        90 DTAvYYCAr~   99 (122)
T d1bz7b1          90 DTAIYYCTRG   99 (122)
T ss_dssp             GCEEEEEEEE
T ss_pred             CceEEEeecC
Confidence            9999999754

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.67  E-value=9.3e-05  Score=45.76  Aligned_cols=69  Identities=20%  Similarity=0.399  Sum_probs=45.0

Q ss_pred             ccEEecCCcEEEEEEEeeeC--CCeeEEEECC--eEEe----ec-cC-------CCcceeEEeee-----cEEEEccCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSP--LPSVFWTQEG--SQVL----MF-PG-------NAYGHLHVTQE-----GTLRIQGVQK  103 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~~----~~-~~-------~~~~~~~~~~~-----~~l~i~~~~~  103 (292)
                      ...+.+|++++|.|.+.|+.  ...+.|+|..  +.+.    +. .+       ...+++....+     ..|.|.+++.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~   88 (121)
T d2p49b1           9 GGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKP   88 (121)
T ss_dssp             CEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccc
Confidence            34567899999999998864  3357898842  2111    11 11       11234444432     2599999999


Q ss_pred             CCCeEEEEEE
Q psy15128        104 EDAGFFVCSA  113 (292)
Q Consensus       104 ~d~g~Y~C~~  113 (292)
                      +|++.|.|..
T Consensus        89 eDtAvYYCAr   98 (121)
T d2p49b1          89 EDTATYYCAA   98 (121)
T ss_dssp             GGCEEEEEEE
T ss_pred             cceeEEeeec
Confidence            9999999975

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.67  E-value=0.00014  Score=45.65  Aligned_cols=69  Identities=20%  Similarity=0.338  Sum_probs=43.9

Q ss_pred             cEEecCCcEEEEEEEeeeCC----CeeEEEEC--CeEEe----ecc-------CCCcceeEEeee-----cEEEEccCCC
Q psy15128         46 QKVGLNGIASFQCVAEGSPL----PSVFWTQE--GSQVL----MFP-------GNAYGHLHVTQE-----GTLRIQGVQK  103 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~~----~~v~W~~~--~~~~~----~~~-------~~~~~~~~~~~~-----~~l~i~~~~~  103 (292)
                      ..+.+|++++|.|.+.|...    ..+.|+|.  ++.+.    ...       ....+++....+     ..|.|.+++.
T Consensus        10 ~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~   89 (126)
T d1etzb1          10 GILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDT   89 (126)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccc
Confidence            35778999999999987532    24569863  21110    011       112334544443     2599999999


Q ss_pred             CCCeEEEEEEE
Q psy15128        104 EDAGFFVCSAL  114 (292)
Q Consensus       104 ~d~g~Y~C~~~  114 (292)
                      +|++.|.|...
T Consensus        90 eDtAvYyCAr~  100 (126)
T d1etzb1          90 SDTATYHCARR  100 (126)
T ss_dssp             GGCEEEEEEEE
T ss_pred             cccceEEEEEe
Confidence            99999999753

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.67  E-value=9.1e-05  Score=45.93  Aligned_cols=70  Identities=16%  Similarity=0.367  Sum_probs=46.3

Q ss_pred             ccEEecCCcEEEEEEEeeeCC--CeeEEEEC--CeEEe------ec--------cCCCcceeEEeeec-----EEEEccC
Q psy15128         45 DQKVGLNGIASFQCVAEGSPL--PSVFWTQE--GSQVL------MF--------PGNAYGHLHVTQEG-----TLRIQGV  101 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~--~~v~W~~~--~~~~~------~~--------~~~~~~~~~~~~~~-----~l~i~~~  101 (292)
                      ...+.+|++++|.|.+.|+..  ..+.|+|.  ++.+.      ..        .....+++.+..+.     .|.|.++
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL   88 (122)
T d1q9rb1           9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL   88 (122)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeee
Confidence            345778999999999988543  35889874  22111      00        11223455555432     5999999


Q ss_pred             CCCCCeEEEEEEE
Q psy15128        102 QKEDAGFFVCSAL  114 (292)
Q Consensus       102 ~~~d~g~Y~C~~~  114 (292)
                      +.+|++.|.|...
T Consensus        89 ~~eDTAvYYCar~  101 (122)
T d1q9rb1          89 RAEDSATYYCARD  101 (122)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             ccCcceEEEEEec
Confidence            9999999999764

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.66  E-value=0.00019  Score=44.88  Aligned_cols=70  Identities=17%  Similarity=0.382  Sum_probs=44.9

Q ss_pred             ccEEecCCcEEEEEEEeeeCC--CeeEEEEC--CeEEe----ec-c-------CCCcceeEEeeec-----EEEEccCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSPL--PSVFWTQE--GSQVL----MF-P-------GNAYGHLHVTQEG-----TLRIQGVQK  103 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~--~~v~W~~~--~~~~~----~~-~-------~~~~~~~~~~~~~-----~l~i~~~~~  103 (292)
                      ...+.+|+++.|.|.+.|+..  ..+.|+|.  ++.+.    +. .       ....+++....+.     .|.|.+++.
T Consensus         8 ~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~   87 (126)
T d1rjca1           8 GGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKP   87 (126)
T ss_dssp             CEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCc
Confidence            345678999999999988643  35789874  22211    11 1       1112344444332     499999999


Q ss_pred             CCCeEEEEEEE
Q psy15128        104 EDAGFFVCSAL  114 (292)
Q Consensus       104 ~d~g~Y~C~~~  114 (292)
                      +|++.|.|...
T Consensus        88 eDTAvYYCAr~   98 (126)
T d1rjca1          88 EDTAMYYCAAD   98 (126)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccCceeEEEee
Confidence            99999999754

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.65  E-value=8.1e-05  Score=46.67  Aligned_cols=70  Identities=17%  Similarity=0.401  Sum_probs=45.4

Q ss_pred             ccEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEe----ecc-C-------CCcceeEEeeec-----EEEEccCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVL----MFP-G-------NAYGHLHVTQEG-----TLRIQGVQK  103 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~----~~~-~-------~~~~~~~~~~~~-----~l~i~~~~~  103 (292)
                      ...+.+|++++|.|.+.|+.  ...+.|+|.  ++.+.    +.. +       ...+++.+..+.     .|.|.+++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~~   88 (130)
T d1rzga1           9 AEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLRS   88 (130)
T ss_dssp             CEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecCC
Confidence            44577899999999998753  336889873  22111    111 1       112444444332     489999999


Q ss_pred             CCCeEEEEEEE
Q psy15128        104 EDAGFFVCSAL  114 (292)
Q Consensus       104 ~d~g~Y~C~~~  114 (292)
                      +|++.|.|...
T Consensus        89 eDtA~YYCAr~   99 (130)
T d1rzga1          89 EDTAVFYCASP   99 (130)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CccEEEEEEEe
Confidence            99999999753

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.65  E-value=4.2e-05  Score=47.50  Aligned_cols=70  Identities=16%  Similarity=0.389  Sum_probs=45.4

Q ss_pred             ccEEecCCcEEEEEEEeeeCC--C--eeEEEEC--CeEEe----ecc-CC------CcceeEEeeec-----EEEEccCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSPL--P--SVFWTQE--GSQVL----MFP-GN------AYGHLHVTQEG-----TLRIQGVQ  102 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~--~--~v~W~~~--~~~~~----~~~-~~------~~~~~~~~~~~-----~l~i~~~~  102 (292)
                      ...+.+|++++|.|.+.|+..  .  .+.|+|.  ++.+.    ... +.      ..+++....+.     .|.|.+++
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~   88 (120)
T d1ai1h1           9 PAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVT   88 (120)
T ss_dssp             CSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCC
T ss_pred             CceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeee
Confidence            345778999999999988642  2  4679874  22221    111 11      12344444432     59999999


Q ss_pred             CCCCeEEEEEEE
Q psy15128        103 KEDAGFFVCSAL  114 (292)
Q Consensus       103 ~~d~g~Y~C~~~  114 (292)
                      .+|++.|.|...
T Consensus        89 ~eDtAvYYCAr~  100 (120)
T d1ai1h1          89 NEDTAMYYCSRE  100 (120)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             ccceeEEEEEec
Confidence            999999999743

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.64  E-value=0.00012  Score=45.31  Aligned_cols=69  Identities=16%  Similarity=0.417  Sum_probs=45.3

Q ss_pred             ccEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEe----ecc--------CCCcceeEEeeec-----EEEEccCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVL----MFP--------GNAYGHLHVTQEG-----TLRIQGVQK  103 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~----~~~--------~~~~~~~~~~~~~-----~l~i~~~~~  103 (292)
                      ...+.+|+++.|.|.+.|+.  ...+.|+|.  ++.+.    +..        ....+++.+..+.     .|.|.+++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~   88 (124)
T d1yedb1           9 PELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKS   88 (124)
T ss_dssp             CEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCG
T ss_pred             CceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCC
Confidence            44567899999999998854  335788873  22211    111        1113444454432     589999999


Q ss_pred             CCCeEEEEEE
Q psy15128        104 EDAGFFVCSA  113 (292)
Q Consensus       104 ~d~g~Y~C~~  113 (292)
                      +|++.|.|..
T Consensus        89 eDTAvYYCAR   98 (124)
T d1yedb1          89 EDSAVYFCTR   98 (124)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEecc
Confidence            9999999974

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.63  E-value=4.3e-05  Score=47.15  Aligned_cols=84  Identities=11%  Similarity=0.131  Sum_probs=47.7

Q ss_pred             CCcEEeC-CCccEEecCCcEEEEEEEeeeCCC--eeEEEECCeEEeeccC---CCcceeEEeeecEEEEccCCCCCCeEE
Q psy15128         36 PPSFVVR-PQDQKVGLNGIASFQCVAEGSPLP--SVFWTQEGSQVLMFPG---NAYGHLHVTQEGTLRIQGVQKEDAGFF  109 (292)
Q Consensus        36 ~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~--~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~Y  109 (292)
                      +|.+.+. |....+..+..++|.|.+.++.+.  .+.|.++|..+.....   .......+...+.|++......  ..|
T Consensus         8 ~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w~--~~y   85 (107)
T d1hxmb2           8 SPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSLD--KEH   85 (107)
T ss_dssp             SCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGGG--SCE
T ss_pred             CCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccCC--CeE
Confidence            4444443 333345567889999999996333  7999998875431100   0001111222345666654442  369


Q ss_pred             EEEEEeCCcCee
Q psy15128        110 VCSALSVAGSTT  121 (292)
Q Consensus       110 ~C~~~~~~~~~~  121 (292)
                      +|.+.+......
T Consensus        86 tC~V~H~s~~~~   97 (107)
T d1hxmb2          86 RCIVRHENNKNG   97 (107)
T ss_dssp             EEEEEETTSGGG
T ss_pred             EEEEEECCCCCC
Confidence            999998755443

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=5.7e-05  Score=46.47  Aligned_cols=73  Identities=11%  Similarity=0.078  Sum_probs=45.4

Q ss_pred             EecCCcEEEEEEEeee-CC---CeeEEEECCeEEeeccCCC---cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128         48 VGLNGIASFQCVAEGS-PL---PSVFWTQEGSQVLMFPGNA---YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST  120 (292)
Q Consensus        48 ~~~g~~~~l~C~~~~~-~~---~~v~W~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~  120 (292)
                      +..++.++|.|.+.++ |.   ..+.|.+++..+.......   .....+...+.|.|..........|+|.+.+.....
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~~   94 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA   94 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCCCC
Confidence            4567889999999985 43   3677999887653211100   111122334466666665555668999999876543

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.62  E-value=0.00011  Score=45.93  Aligned_cols=69  Identities=17%  Similarity=0.479  Sum_probs=45.5

Q ss_pred             cEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEe----ecc-C-------CCcceeEEeeec-----EEEEccCCCC
Q psy15128         46 QKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVL----MFP-G-------NAYGHLHVTQEG-----TLRIQGVQKE  104 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~----~~~-~-------~~~~~~~~~~~~-----~l~i~~~~~~  104 (292)
                      ..+.+|++++|.|.+.|+.  ...+.|+|.  ++.+.    +.. +       ...+++.+..+.     .|.|.+++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~e   89 (127)
T d2fb4h1          10 GVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPE   89 (127)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeec
Confidence            4467899999999998853  336789873  22221    111 1       112445554432     5999999999


Q ss_pred             CCeEEEEEEE
Q psy15128        105 DAGFFVCSAL  114 (292)
Q Consensus       105 d~g~Y~C~~~  114 (292)
                      |++.|.|...
T Consensus        90 DTA~YYCAr~   99 (127)
T d2fb4h1          90 DTGVYFCARD   99 (127)
T ss_dssp             GCEEEEEEEE
T ss_pred             ceeEEEEEEe
Confidence            9999999754

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=8e-05  Score=46.81  Aligned_cols=79  Identities=13%  Similarity=0.138  Sum_probs=46.4

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCC--eEEEeEc--CeEe-----ccCCCceEEecCCCccc---ccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEP--TLHWKKN--GQFI-----DLESSKRVSILGDPWFD---SRRSRSIFGSVLGAL  272 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~--g~~~-----~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~  272 (292)
                      |..+.+.+|+.++|.|+...+....  .+.|++.  |+..     ...........+.....   ......|.|..+..+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence            3456778999999999853332222  4789983  3221     11111111111111111   122347899999999


Q ss_pred             ccceeEEEEee
Q psy15128        273 SDDQWKLIAKN  283 (292)
Q Consensus       273 ~~g~y~C~a~n  283 (292)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (117)
T d1dqta_          86 DTGLYLCKVEL   96 (117)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCEeEEEEEec
Confidence            99999998864

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.62  E-value=7.5e-05  Score=46.51  Aligned_cols=70  Identities=17%  Similarity=0.302  Sum_probs=41.9

Q ss_pred             EEeCCCceEEEeeCCCCCC----CCeEEEeEc--CeEec------cCC--------CceEEecCCCcccccccccccccc
Q psy15128        209 RVASGETALLECGPPKGQP----EPTLHWKKN--GQFID------LES--------SKRVSILGDPWFDSRRSRSIFGSV  268 (292)
Q Consensus       209 ~~~~g~~~~l~C~~~~~~p----~~~~~W~~~--g~~~~------~~~--------~~~~~~~~~~~~~~~~~~~l~i~~  268 (292)
                      .+++|++++|+|.+ .|..    ...+.|++.  |+.+.      ...        ..|+.+..+.   ......|.|..
T Consensus        11 ~v~PG~sv~LsC~~-SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~---s~~~~~L~i~~   86 (120)
T d2agjh1          11 LVKPTQTLTLTCTF-SGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDA---SKKQVVLTLTN   86 (120)
T ss_dssp             BCCSSSEEEEEEEE-ESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCT---TTTEEEEEEES
T ss_pred             eECCCCCEEEEEEE-cccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceeccc---ccceeeeeEEe
Confidence            46789999999997 4432    246789972  33211      000        0122221111   12234688999


Q ss_pred             ccccccceeEEEEe
Q psy15128        269 LGALSDDQWKLIAK  282 (292)
Q Consensus       269 ~~~~~~g~y~C~a~  282 (292)
                      ++.+|++.|.|...
T Consensus        87 l~~eDsAvYyCAr~  100 (120)
T d2agjh1          87 LDPVDTATYYCART  100 (120)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             eeeccceEEeeEec
Confidence            99999999999744

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.62  E-value=0.00011  Score=45.62  Aligned_cols=69  Identities=17%  Similarity=0.399  Sum_probs=45.1

Q ss_pred             cEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEe----eccC--------CCcceeEEeeec-----EEEEccCCCC
Q psy15128         46 QKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVL----MFPG--------NAYGHLHVTQEG-----TLRIQGVQKE  104 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~----~~~~--------~~~~~~~~~~~~-----~l~i~~~~~~  104 (292)
                      ..+.+|++++|.|.+.|+.  ...+.|+|.  |+.+.    +...        ...+++....+.     .|.|.+++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~e   89 (121)
T d1ol0a_          10 GLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAE   89 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccc
Confidence            3467899999999998753  335789873  22211    0111        112344444432     5999999999


Q ss_pred             CCeEEEEEEE
Q psy15128        105 DAGFFVCSAL  114 (292)
Q Consensus       105 d~g~Y~C~~~  114 (292)
                      |++.|.|...
T Consensus        90 DtAvYYCAr~   99 (121)
T d1ol0a_          90 DTAVYYCARE   99 (121)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEEEe
Confidence            9999999653

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.62  E-value=0.00014  Score=44.59  Aligned_cols=71  Identities=21%  Similarity=0.240  Sum_probs=43.5

Q ss_pred             eEEeCCCceEEEeeCCCCCCC--CeEEEeE--cCeEe------ccCCC--------ceEEecCCCccccccccccccccc
Q psy15128        208 TRVASGETALLECGPPKGQPE--PTLHWKK--NGQFI------DLESS--------KRVSILGDPWFDSRRSRSIFGSVL  269 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~~p~--~~~~W~~--~g~~~------~~~~~--------~~~~~~~~~~~~~~~~~~l~i~~~  269 (292)
                      ..+++|++++|+|.+ .|...  -.+.|.+  .|+.+      .....        .|+.+..+.   .+....|.+..+
T Consensus        10 ~lvkPg~sl~LsC~~-SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~---s~n~~~L~~~sL   85 (117)
T d1c5db1          10 GLVQPSQTLSLTCTV-SGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDT---SKSQVFLKMNSL   85 (117)
T ss_dssp             SEECTTSCEEEEEEE-CSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEET---TTTEEEEEECSC
T ss_pred             ceECCCCCeEEEEEE-cCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEeccc---ccceeecccccc
Confidence            457899999999998 66443  3678877  23332      11111        122222111   122235888899


Q ss_pred             cccccceeEEEEe
Q psy15128        270 GALSDDQWKLIAK  282 (292)
Q Consensus       270 ~~~~~g~y~C~a~  282 (292)
                      ..+|.+.|.|...
T Consensus        86 ~~eDtAvYYCAr~   98 (117)
T d1c5db1          86 QTEDTAIYFCTRE   98 (117)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             ccCcceEEEEecc
Confidence            9999999999654

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=2.4e-05  Score=48.04  Aligned_cols=78  Identities=10%  Similarity=0.166  Sum_probs=45.3

Q ss_pred             CCccEEecCCcEEEEEEEeee-CC---CeeEEEECCeEEeeccC---CCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         43 PQDQKVGLNGIASFQCVAEGS-PL---PSVFWTQEGSQVLMFPG---NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~-~~---~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      |....+..++.++|.|.+.|+ |.   ..+.|++++........   .......+...+.|.|..-.......|+|.+.+
T Consensus         8 Ps~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H   87 (103)
T d1fp5a1           8 PSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTH   87 (103)
T ss_dssp             CCHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEEC
T ss_pred             cCHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEE
Confidence            334445568889999999985 43   25678887754321100   000111223344566665555556789999998


Q ss_pred             CCcCe
Q psy15128        116 VAGST  120 (292)
Q Consensus       116 ~~~~~  120 (292)
                      .....
T Consensus        88 ~~l~~   92 (103)
T d1fp5a1          88 PHLPR   92 (103)
T ss_dssp             SSCSS
T ss_pred             CCCCC
Confidence            65443

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.62  E-value=0.00014  Score=44.85  Aligned_cols=74  Identities=16%  Similarity=0.199  Sum_probs=45.5

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCC--eEEEeE--cCeEe------ccCCCc---------eEEecCCCccccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEP--TLHWKK--NGQFI------DLESSK---------RVSILGDPWFDSRRSRSIFGS  267 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~--~g~~~------~~~~~~---------~~~~~~~~~~~~~~~~~l~i~  267 (292)
                      ...+++|++++|+|.+ .|....  .+.|.+  .|+-+      ....+.         |+.+..+.   .+....|.+.
T Consensus         9 ~~~vkpg~sl~LsC~~-SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~---s~nt~~L~~~   84 (118)
T d2fbjh1           9 GGLVQPGGSLKLSCAA-SGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDN---AKNSLYLQMS   84 (118)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECS---SSCEEEEEEC
T ss_pred             CceECCCCCEEEEEEE-CCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecC---ccceeecccc
Confidence            3467899999999998 665433  577876  33322      111111         12222111   1223358888


Q ss_pred             cccccccceeEEEEeec
Q psy15128        268 VLGALSDDQWKLIAKNI  284 (292)
Q Consensus       268 ~~~~~~~g~y~C~a~n~  284 (292)
                      .++.+|.+.|.|.....
T Consensus        85 sL~~eDtAvYYCAr~~~  101 (118)
T d2fbjh1          85 KVRSEDTALYYCARLHY  101 (118)
T ss_dssp             SCCGGGCEEEEEEEEET
T ss_pred             ccCCCcceEEEeeEecC
Confidence            99999999999987554

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.61  E-value=7.8e-05  Score=46.01  Aligned_cols=74  Identities=14%  Similarity=0.122  Sum_probs=43.4

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCC--eEEEeEc--CeEe------ccCCCc-eEEecCCCccc-----ccccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEP--TLHWKKN--GQFI------DLESSK-RVSILGDPWFD-----SRRSRSIFGSVLG  270 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~--g~~~------~~~~~~-~~~~~~~~~~~-----~~~~~~l~i~~~~  270 (292)
                      ...+++|+++.|+|.+ .|+...  .+.|.+-  |+-+      ....+. .+...-.+.+.     .+....|.+..++
T Consensus         9 ~~~~kPg~sl~LsC~~-SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~   87 (119)
T d1eapb1           9 TELVKPGASVKISCKA-SGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLT   87 (119)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEE-ccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeeccc
Confidence            3467899999999998 665433  5788872  3322      111111 11111111111     1223357888999


Q ss_pred             ccccceeEEEE
Q psy15128        271 ALSDDQWKLIA  281 (292)
Q Consensus       271 ~~~~g~y~C~a  281 (292)
                      .+|.+.|.|..
T Consensus        88 ~eDTAvYYCAr   98 (119)
T d1eapb1          88 SEDSAVYFCKR   98 (119)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEEEE
Confidence            99999999954

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.61  E-value=0.00029  Score=43.98  Aligned_cols=74  Identities=18%  Similarity=0.289  Sum_probs=44.4

Q ss_pred             ceEEeCCCceEEEeeCCCCCCC--CeEEEeEc--CeEe------ccCCCc---------eEEecCCCccccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQPE--PTLHWKKN--GQFI------DLESSK---------RVSILGDPWFDSRRSRSIFGS  267 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~--g~~~------~~~~~~---------~~~~~~~~~~~~~~~~~l~i~  267 (292)
                      ...+++|+++.|+|.+ .|...  -.+.|.+.  |+-+      ....+.         |+.+..+   ..+....|.|+
T Consensus         8 ~~lvkPg~sl~LsC~~-SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D---~s~~~~~L~i~   83 (126)
T d1rjca1           8 GGSVQAGQSLRLSCAT-SGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLD---NAKNTLYLQMN   83 (126)
T ss_dssp             CEEECTTCCEEEEEEC-C-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEE---C--CEEEEEEC
T ss_pred             CceECCCCCeEEEEEE-CCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEec---CCceEEEEEEe
Confidence            3467899999999998 66433  36788872  3322      111111         2222111   11233458888


Q ss_pred             cccccccceeEEEEeec
Q psy15128        268 VLGALSDDQWKLIAKNI  284 (292)
Q Consensus       268 ~~~~~~~g~y~C~a~n~  284 (292)
                      .++.+|.+.|.|.....
T Consensus        84 ~l~~eDTAvYYCAr~~~  100 (126)
T d1rjca1          84 SLKPEDTAMYYCAADTS  100 (126)
T ss_dssp             SCCGGGCEEEEEEECCT
T ss_pred             ccCcccCceeEEEeecc
Confidence            99999999999986543

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.59  E-value=0.00012  Score=45.55  Aligned_cols=69  Identities=16%  Similarity=0.375  Sum_probs=45.5

Q ss_pred             cEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEe----ec-cC-------CCcceeEEeeec-----EEEEccCCCC
Q psy15128         46 QKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVL----MF-PG-------NAYGHLHVTQEG-----TLRIQGVQKE  104 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~----~~-~~-------~~~~~~~~~~~~-----~l~i~~~~~~  104 (292)
                      ..+.+|++++|.|.+.|+.  ...+.|+|.  ++.+.    +. .+       ...+++.+..+.     .|.|.+++.+
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~e   89 (126)
T d1dfbh1          10 GLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAE   89 (126)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccC
Confidence            4567899999999998854  335789873  22221    11 11       112444554432     5999999999


Q ss_pred             CCeEEEEEEE
Q psy15128        105 DAGFFVCSAL  114 (292)
Q Consensus       105 d~g~Y~C~~~  114 (292)
                      |++.|.|...
T Consensus        90 DtavYYCAr~   99 (126)
T d1dfbh1          90 DMALYYCVKG   99 (126)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEEec
Confidence            9999999653

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.59  E-value=0.00016  Score=45.44  Aligned_cols=70  Identities=19%  Similarity=0.436  Sum_probs=46.5

Q ss_pred             ccEEecCCcEEEEEEEeeeC--CCeeEEEEC--CeEEee--------------ccCCCcceeEEeeec-----EEEEccC
Q psy15128         45 DQKVGLNGIASFQCVAEGSP--LPSVFWTQE--GSQVLM--------------FPGNAYGHLHVTQEG-----TLRIQGV  101 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~~--------------~~~~~~~~~~~~~~~-----~l~i~~~  101 (292)
                      ...+.+|++++|.|.+.|..  ...+.|+|.  ++.+..              ......+++.+..+.     .|.|.++
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L   88 (131)
T d3c2ah1           9 GGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSL   88 (131)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceecc
Confidence            34577899999999998754  336788873  222210              011223455555432     5999999


Q ss_pred             CCCCCeEEEEEEE
Q psy15128        102 QKEDAGFFVCSAL  114 (292)
Q Consensus       102 ~~~d~g~Y~C~~~  114 (292)
                      +.+|++.|.|...
T Consensus        89 ~~eDTAvYYCAR~  101 (131)
T d3c2ah1          89 KTEDTAVYSCTTD  101 (131)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccCCceEEEEecc
Confidence            9999999999753

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.58  E-value=6.8e-05  Score=46.12  Aligned_cols=77  Identities=14%  Similarity=0.093  Sum_probs=45.7

Q ss_pred             ceEEeCCCceEEEeeCCCCCCC--CeEEEeE--cCeEe------ccCCCc-eEEecCCCcccc-----cccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQPE--PTLHWKK--NGQFI------DLESSK-RVSILGDPWFDS-----RRSRSIFGSVLG  270 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~--~g~~~------~~~~~~-~~~~~~~~~~~~-----~~~~~l~i~~~~  270 (292)
                      ...+++|+++.|+|.+ .|+..  -.+.|.+  .|+-+      ....+. .+...-.+.+..     .....|.|..++
T Consensus         9 ~~~~kPg~sv~LsC~~-SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~   87 (117)
T d1iqdb1           9 AEVKKPGASVKVSCKV-SGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLR   87 (117)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEE-cCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccC
Confidence            3467899999999998 66532  2578887  23322      111111 111111121111     223358899999


Q ss_pred             ccccceeEEEEeec
Q psy15128        271 ALSDDQWKLIAKNI  284 (292)
Q Consensus       271 ~~~~g~y~C~a~n~  284 (292)
                      .+|++.|.|.....
T Consensus        88 ~eDtAvYYCA~~~~  101 (117)
T d1iqdb1          88 SDDTAVYYCAVPDP  101 (117)
T ss_dssp             GGGCEEEEEEECSS
T ss_pred             cCcceEEEEeEcCC
Confidence            99999999987543

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.58  E-value=0.0001  Score=45.27  Aligned_cols=76  Identities=14%  Similarity=0.062  Sum_probs=44.3

Q ss_pred             ceEEeCCCceEEEeeCCCCCCC--CeEEEeE--cCeEe------ccCCCceEEecCCCccc-----cccccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQPE--PTLHWKK--NGQFI------DLESSKRVSILGDPWFD-----SRRSRSIFGSVLGA  271 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~--~g~~~------~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~  271 (292)
                      ...+++|++++|+|.+ .|...  -.+.|.+  .|+-+      .......+...-.+.+.     .+....|.|..++.
T Consensus         9 ~~lvkPg~sl~LsC~~-SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~   87 (116)
T d7fabh1           9 PGLVRPSQTLSLTCTV-SGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTA   87 (116)
T ss_dssp             CSEECTTSCEEEEEEE-ESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEE-eeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccc
Confidence            3467889999999998 66443  3688887  23322      11111111111111111     12234588889999


Q ss_pred             cccceeEEEEee
Q psy15128        272 LSDDQWKLIAKN  283 (292)
Q Consensus       272 ~~~g~y~C~a~n  283 (292)
                      +|.+.|.|....
T Consensus        88 eDtAvYyCAr~~   99 (116)
T d7fabh1          88 ADTAVYYCARNL   99 (116)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEEeeeec
Confidence            999999997643

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.57  E-value=6.5e-05  Score=46.42  Aligned_cols=70  Identities=16%  Similarity=0.479  Sum_probs=45.4

Q ss_pred             ccEEecCCcEEEEEEEeeeCCC--eeEEEEC--CeEEee------ccC--------CCcceeEEeeec-----EEEEccC
Q psy15128         45 DQKVGLNGIASFQCVAEGSPLP--SVFWTQE--GSQVLM------FPG--------NAYGHLHVTQEG-----TLRIQGV  101 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~~--~v~W~~~--~~~~~~------~~~--------~~~~~~~~~~~~-----~l~i~~~  101 (292)
                      ...+.+|+++.|.|.+.|+...  .+.|+|.  ++.+..      ...        ...+++.+..+.     .|.+.++
T Consensus         9 ~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~L   88 (121)
T d1nfdf1           9 GDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRL   88 (121)
T ss_dssp             CEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEESC
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceeccc
Confidence            4457789999999999886433  5789883  332211      011        112333333322     4999999


Q ss_pred             CCCCCeEEEEEEE
Q psy15128        102 QKEDAGFFVCSAL  114 (292)
Q Consensus       102 ~~~d~g~Y~C~~~  114 (292)
                      +.+|++.|.|...
T Consensus        89 ~~eDTAvYYCAr~  101 (121)
T d1nfdf1          89 RVDDTAIYYCTRA  101 (121)
T ss_dssp             CGGGCEECEEEEE
T ss_pred             CCCcceEEEEecc
Confidence            9999999999653

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.57  E-value=7.5e-05  Score=47.02  Aligned_cols=73  Identities=12%  Similarity=0.047  Sum_probs=44.7

Q ss_pred             ecCCcEEEEEEEeee-CC---CeeEEEECCeEEeeccCCCc---ceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCee
Q psy15128         49 GLNGIASFQCVAEGS-PL---PSVFWTQEGSQVLMFPGNAY---GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT  121 (292)
Q Consensus        49 ~~g~~~~l~C~~~~~-~~---~~v~W~~~~~~~~~~~~~~~---~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~  121 (292)
                      ..++.++|.|.+.++ |.   ..+.|.+++..+........   ....+...+.|.|..-.......|+|.+.+......
T Consensus        30 ~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~l~~p  109 (119)
T d1igtb3          30 MISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAP  109 (119)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSC
T ss_pred             ccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECCCCCC
Confidence            457889999999985 42   46889999976532111110   011122234566665555566789999998754433

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.57  E-value=0.00017  Score=44.23  Aligned_cols=75  Identities=16%  Similarity=0.158  Sum_probs=44.4

Q ss_pred             ceEEeCCCceEEEeeCCCCCCC--CeEEEeEc--CeEe------ccCCCc-eEEecCCCcccc-----cccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQPE--PTLHWKKN--GQFI------DLESSK-RVSILGDPWFDS-----RRSRSIFGSVLG  270 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~--g~~~------~~~~~~-~~~~~~~~~~~~-----~~~~~l~i~~~~  270 (292)
                      ...+++|+++.|+|.+ .|...  -.+.|.+.  |+-+      ....+. .+...-.+.+..     .....|.+..++
T Consensus         9 ~~~vkpg~sl~LsC~~-SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~   87 (117)
T d1jpth1           9 GGLVQPGGSLRLSCAA-SGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLR   87 (117)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEE-cCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccC
Confidence            4568899999999998 66543  36788772  3322      111111 111111111111     223357788999


Q ss_pred             ccccceeEEEEe
Q psy15128        271 ALSDDQWKLIAK  282 (292)
Q Consensus       271 ~~~~g~y~C~a~  282 (292)
                      .+|.+.|+|...
T Consensus        88 ~eDTAvYYCAr~   99 (117)
T d1jpth1          88 AEDTAVYYCARD   99 (117)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCCceEEEEeec
Confidence            999999999654

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.56  E-value=0.00011  Score=44.29  Aligned_cols=66  Identities=12%  Similarity=0.209  Sum_probs=38.5

Q ss_pred             CCcEEEEEEEeeeCCC--eeEEEECCeEEeec--cCCCc------ceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         51 NGIASFQCVAEGSPLP--SVFWTQEGSQVLMF--PGNAY------GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        51 g~~~~l~C~~~~~~~~--~v~W~~~~~~~~~~--~~~~~------~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      ...++|.|.+.|+.+.  .|.|.+++..+...  .+...      +...+...+.|.+..   .+...|+|.+.+....
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~---~~~~~ytC~V~H~s~~   89 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDG---GLEHVYSCRVKGIATG   89 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECT---TCGGGEEEEEEEGGGT
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECC---CCCCEEEEEEEeCCCC
Confidence            4578999999997433  78899987543211  11111      111222333555543   4456799999875443

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.55  E-value=0.00038  Score=43.71  Aligned_cols=71  Identities=17%  Similarity=0.426  Sum_probs=46.3

Q ss_pred             ccEEecCCcEEEEEEEeeeCCC--eeEEEEC--CeEEe----e--cc------CCCcceeEEeeec-----EEEEccCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGSPLP--SVFWTQE--GSQVL----M--FP------GNAYGHLHVTQEG-----TLRIQGVQK  103 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~~~~--~v~W~~~--~~~~~----~--~~------~~~~~~~~~~~~~-----~l~i~~~~~  103 (292)
                      ...+.+|+++.|.|.+.|+...  .+.|+|.  ++.+.    +  ..      ....+++.+..+.     .|.+.+++.
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~   87 (133)
T d1rzfh1           8 AEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRS   87 (133)
T ss_dssp             CEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCC
Confidence            3457789999999999886433  5778873  22221    0  01      1123455554432     589999999


Q ss_pred             CCCeEEEEEEEe
Q psy15128        104 EDAGFFVCSALS  115 (292)
Q Consensus       104 ~d~g~Y~C~~~~  115 (292)
                      +|++.|.|....
T Consensus        88 eDtA~YYCAr~~   99 (133)
T d1rzfh1          88 DDTAVYYCASNS   99 (133)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCCEEEEeeecc
Confidence            999999996543

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=0.00015  Score=41.93  Aligned_cols=53  Identities=21%  Similarity=0.323  Sum_probs=37.0

Q ss_pred             eCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccc-cccceeEEEEe
Q psy15128        211 ASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGA-LSDDQWKLIAK  282 (292)
Q Consensus       211 ~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~~~g~y~C~a~  282 (292)
                      ..|..|+|+|.. .+.  ..|.|.++++.++...+..+.                +..++. +++|-|.|...
T Consensus        12 ISGTtV~LTCP~-~~~--~~I~Wkkn~~~i~g~~~~~L~----------------L~~FSE~e~SGyY~C~~~   65 (100)
T d1jbja2          12 ISGTSVELTCPL-DSD--ENLKWEKNGQELPQKHDKHLV----------------LQDFSEVEDSGYYVCYTP   65 (100)
T ss_dssp             EETTEEEEECSS-CCC--TTCEEEETTEEECSCCCSEEE----------------EESCCTTTSCEEEEEECS
T ss_pred             EeCCEEEEECCC-CCC--CceEEeeccccCCCCCCcEEE----------------EccccccccCcceEEecC
Confidence            468999999996 432  479999999998644433333                333333 68999999644

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.52  E-value=0.00015  Score=45.02  Aligned_cols=77  Identities=16%  Similarity=0.191  Sum_probs=46.2

Q ss_pred             CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--CeEec----c-CCCce-EEecCCCcccc--cccccccccccccccc
Q psy15128        205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQFID----L-ESSKR-VSILGDPWFDS--RRSRSIFGSVLGALSD  274 (292)
Q Consensus       205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~~~----~-~~~~~-~~~~~~~~~~~--~~~~~l~i~~~~~~~~  274 (292)
                      |....+.+|++++|.|.. .......+.|++-  |+.+.    . ..+.. ........+..  .....|.|.....+|+
T Consensus         8 P~~~~~~~G~~vtL~C~~-~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~ds   86 (112)
T d1fo0b_           8 PRWRLVPRGQAVNLRCIL-KNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQG   86 (112)
T ss_dssp             CSEEECCTTCCEEEEEEE-SCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCSC
T ss_pred             CCeEEECCCCCEEEEEEE-ecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCccCC
Confidence            355678899999999986 4444467999983  32211    0 11111 11111112211  2224578888999999


Q ss_pred             ceeEEEEe
Q psy15128        275 DQWKLIAK  282 (292)
Q Consensus       275 g~y~C~a~  282 (292)
                      +.|.|.+.
T Consensus        87 a~Y~Ca~~   94 (112)
T d1fo0b_          87 RTLYCTCS   94 (112)
T ss_dssp             EEEEEEEE
T ss_pred             ccEEEEEe
Confidence            99999964

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.52  E-value=0.0002  Score=44.76  Aligned_cols=68  Identities=19%  Similarity=0.302  Sum_probs=44.7

Q ss_pred             cEEecCCcEEEEEEEeeeCC---CeeEEEEC--CeEEee-----c------cCCCcceeEEeee-----cEEEEccCCCC
Q psy15128         46 QKVGLNGIASFQCVAEGSPL---PSVFWTQE--GSQVLM-----F------PGNAYGHLHVTQE-----GTLRIQGVQKE  104 (292)
Q Consensus        46 ~~~~~g~~~~l~C~~~~~~~---~~v~W~~~--~~~~~~-----~------~~~~~~~~~~~~~-----~~l~i~~~~~~  104 (292)
                      ..+.+|+++.|.|.+.|+..   ..+.|+|.  |+.+..     .      .....+++....+     ..|.|.+++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~e   89 (127)
T d3cx5j1          10 GLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTE   89 (127)
T ss_dssp             SEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccccc
Confidence            44678999999999988643   35789873  333211     0      0111233433332     25999999999


Q ss_pred             CCeEEEEEE
Q psy15128        105 DAGFFVCSA  113 (292)
Q Consensus       105 d~g~Y~C~~  113 (292)
                      |++.|.|..
T Consensus        90 DtAvYyCAr   98 (127)
T d3cx5j1          90 DTATYYCAR   98 (127)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEeee
Confidence            999999974

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.52  E-value=0.00018  Score=44.53  Aligned_cols=76  Identities=14%  Similarity=0.123  Sum_probs=44.8

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCC--eEEEeE--cCeEe------ccCCC-ceEEecCCCcccc-----cccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEP--TLHWKK--NGQFI------DLESS-KRVSILGDPWFDS-----RRSRSIFGSVLG  270 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~--~g~~~------~~~~~-~~~~~~~~~~~~~-----~~~~~l~i~~~~  270 (292)
                      ...+++|++++|+|.+ .|...-  -+.|.+  .|+-+      ....+ ..+...-.+.+..     .....|.+..++
T Consensus        10 ~~~vkpg~sl~LsC~~-SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~   88 (122)
T d1vgeh1          10 AEVKKPGASVKVSCKA-SGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLR   88 (122)
T ss_dssp             CEEECTTCCEEEEEEE-CSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CcEECCCCCEEEEEEE-cCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccC
Confidence            4568999999999998 665433  578887  23222      11111 1111111111111     222357788999


Q ss_pred             ccccceeEEEEee
Q psy15128        271 ALSDDQWKLIAKN  283 (292)
Q Consensus       271 ~~~~g~y~C~a~n  283 (292)
                      .+|.+.|+|....
T Consensus        89 ~eDtA~YYCAr~~  101 (122)
T d1vgeh1          89 PEDTAVYYCARDP  101 (122)
T ss_dssp             GGGCEEEEEEEET
T ss_pred             CCcceEEEEeecC
Confidence            9999999997653

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.52  E-value=4.6e-05  Score=48.70  Aligned_cols=73  Identities=18%  Similarity=0.155  Sum_probs=42.5

Q ss_pred             CCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCce---EE---ecCCCccccccccccccccccccccc-eeEEEEee
Q psy15128        212 SGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKR---VS---ILGDPWFDSRRSRSIFGSVLGALSDD-QWKLIAKN  283 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~---~~---~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~a~n  283 (292)
                      .+..++|.|.+.+.+|.. .|.|++||+.+.......   ..   ...++.|.  ....|.+..-...+.| .|+|.++.
T Consensus        19 ~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys--~sS~L~v~~~~W~~~g~~ytC~V~H   96 (127)
T d1ogae2          19 HTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYS--LSSRLRVSATFWQNPRNHFRCQVQF   96 (127)
T ss_dssp             HHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEE--EEEEEEEEHHHHTCTTCEEEEEEEE
T ss_pred             cCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEE--EEEEEEECHHHhCCCCCEEEEEEEE
Confidence            357789999995546543 899999999884211100   00   11222222  2234445444445556 69999987


Q ss_pred             ccc
Q psy15128        284 IRN  286 (292)
Q Consensus       284 ~~g  286 (292)
                      ...
T Consensus        97 ~~l   99 (127)
T d1ogae2          97 YGL   99 (127)
T ss_dssp             CCB
T ss_pred             CCC
Confidence            644

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.52  E-value=0.0001  Score=45.91  Aligned_cols=76  Identities=12%  Similarity=0.142  Sum_probs=45.0

Q ss_pred             eEEeCCCceEEEeeCCCCCC--CCeEEEeEc--CeEe------ccCCCceE-EecCCCccc-----cccccccccccccc
Q psy15128        208 TRVASGETALLECGPPKGQP--EPTLHWKKN--GQFI------DLESSKRV-SILGDPWFD-----SRRSRSIFGSVLGA  271 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--g~~~------~~~~~~~~-~~~~~~~~~-----~~~~~~l~i~~~~~  271 (292)
                      ..+++|+++.|+|.+ .|..  .-.+.|.+.  |+-+      ..+.+... ...-.+.+.     .+....|.+..+..
T Consensus         9 ~lvkpg~sl~LsC~~-SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~   87 (124)
T d1zvya1           9 GSVQAGGSLRLSCAA-SGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKS   87 (124)
T ss_dssp             EECCTTCCEEEEEEE-ESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEE-cCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccC
Confidence            457899999999998 6544  336889872  3222      11111111 111111111     12334678889999


Q ss_pred             cccceeEEEEeec
Q psy15128        272 LSDDQWKLIAKNI  284 (292)
Q Consensus       272 ~~~g~y~C~a~n~  284 (292)
                      +|.+.|.|.+...
T Consensus        88 eDtAvYYCAr~~~  100 (124)
T d1zvya1          88 EDTAIYTCGATRK  100 (124)
T ss_dssp             GGCEEEEEEECSS
T ss_pred             CcceEEEEeeccc
Confidence            9999999987543

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.52  E-value=4e-05  Score=47.38  Aligned_cols=74  Identities=11%  Similarity=0.160  Sum_probs=45.4

Q ss_pred             ceEEeCCCceEEEeeCCCC--CCCCeEEEeEc--CeE---e-ccC-CCc--------eEEecCCCccccccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKG--QPEPTLHWKKN--GQF---I-DLE-SSK--------RVSILGDPWFDSRRSRSIFGSVL  269 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~--~p~~~~~W~~~--g~~---~-~~~-~~~--------~~~~~~~~~~~~~~~~~l~i~~~  269 (292)
                      ...+.+|++++|+|.. .+  ...-.+.|.+.  |+.   + ... ...        ++.+..+   .......|.|..+
T Consensus         4 ~~~~~eG~svtl~C~y-s~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d---~~~~~~~lti~~L   79 (110)
T d1u9ka_           4 RYDLVEGQTLTVKCPF-NIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHD---PSEAMLQVQMTDL   79 (110)
T ss_dssp             EEEECTTCCEEEEEEC-CHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEE---GGGTEEEEEECSC
T ss_pred             CCcCCCCCCEEEEEEE-CCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEE---CCCCEEEEEECcc
Confidence            4578999999999997 44  23446889983  321   1 111 111        1112111   1122345889999


Q ss_pred             cccccceeEEEEeec
Q psy15128        270 GALSDDQWKLIAKNI  284 (292)
Q Consensus       270 ~~~~~g~y~C~a~n~  284 (292)
                      +.+|+|.|.|.....
T Consensus        80 ~~eDsa~YyCa~~~~   94 (110)
T d1u9ka_          80 QVTDSGLYRCVIYHP   94 (110)
T ss_dssp             CGGGCEEEEEEEECT
T ss_pred             ccCCCEEEEEEEeCC
Confidence            999999999987543

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=0.00032  Score=42.68  Aligned_cols=70  Identities=14%  Similarity=0.190  Sum_probs=44.7

Q ss_pred             cCCcEEEEEEEeee-CCC--eeEEEECCeEEeeccC--CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128         50 LNGIASFQCVAEGS-PLP--SVFWTQEGSQVLMFPG--NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS  119 (292)
Q Consensus        50 ~g~~~~l~C~~~~~-~~~--~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~  119 (292)
                      .++.++|.|.+.++ |..  .+.|.+++........  .......+...+.|.|..........|+|.+.+....
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~~   92 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNP   92 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSC
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCCC
Confidence            46789999999996 443  5678887654332111  1111122334557888888777777899999886543

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.51  E-value=0.00023  Score=43.80  Aligned_cols=75  Identities=15%  Similarity=0.057  Sum_probs=44.4

Q ss_pred             ceEEeCCCceEEEeeCCCCCCC--CeEEEeEc--CeEe------ccCCCc-eEEecCCCccc-----ccccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQPE--PTLHWKKN--GQFI------DLESSK-RVSILGDPWFD-----SRRSRSIFGSVLG  270 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~--g~~~------~~~~~~-~~~~~~~~~~~-----~~~~~~l~i~~~~  270 (292)
                      ...+++|++++|+|.+ .|...  -.+.|.+.  |+-+      ....+. .+...-.+.+.     .+....|.|..++
T Consensus         8 ~~~~kPG~sl~LsC~~-SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~   86 (117)
T d1um5h1           8 PVLVKPGGSVKMSCKA-SEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLT   86 (117)
T ss_dssp             CEEECTTCCEEEEEEE-SSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEE-ccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccC
Confidence            4568899999999998 66543  36889872  3322      111111 11111111111     1222358888999


Q ss_pred             ccccceeEEEEe
Q psy15128        271 ALSDDQWKLIAK  282 (292)
Q Consensus       271 ~~~~g~y~C~a~  282 (292)
                      .+|.+.|.|...
T Consensus        87 ~eDtAvYYCAr~   98 (117)
T d1um5h1          87 SEDSAVYYCARS   98 (117)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEeec
Confidence            999999999654

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.48  E-value=0.00019  Score=43.48  Aligned_cols=71  Identities=15%  Similarity=0.213  Sum_probs=43.5

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCC--eEEEeE--cCeEec------cC---CC--------ceEEecCCCccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEP--TLHWKK--NGQFID------LE---SS--------KRVSILGDPWFDSRRSRSIF  265 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~--~g~~~~------~~---~~--------~~~~~~~~~~~~~~~~~~l~  265 (292)
                      ...+++|++++|+|.+ .|....  -+.|.+  .|+-++      ..   ..        .|+.+..+.   ......|.
T Consensus         9 ~~~vkPG~Sl~LsC~~-SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~---s~~t~~L~   84 (109)
T d2ck0h1           9 GGLVQPRGSLKLSCAA-SGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDD---SQSMLYLQ   84 (109)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEET---TTTEEEEE
T ss_pred             CCeECCCCCeEEEEEE-CCCcccccccccceeCCCcceecccccccccccccceeccccccCceecccc---ccceeEec
Confidence            4567899999999998 664433  678877  232221      00   00        122222111   12334688


Q ss_pred             cccccccccceeEEEE
Q psy15128        266 GSVLGALSDDQWKLIA  281 (292)
Q Consensus       266 i~~~~~~~~g~y~C~a  281 (292)
                      +..++.+|.+.|.|.-
T Consensus        85 i~sL~~eDTAvYYCAr  100 (109)
T d2ck0h1          85 MNNLKTEDTGIYYCVR  100 (109)
T ss_dssp             ECSCCGGGCEEEEEEE
T ss_pred             ccCCCHhHCEEEEEEE
Confidence            8899999999999974

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.0011  Score=36.94  Aligned_cols=58  Identities=16%  Similarity=0.258  Sum_probs=39.2

Q ss_pred             ecCCcEEEEEEEeeeCCC--eeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128         49 GLNGIASFQCVAEGSPLP--SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS  115 (292)
Q Consensus        49 ~~g~~~~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~  115 (292)
                      ..|..+.|.|.....+.+  --.|.|+|+.+......       .....++|..  .+++|.|.|.+..
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~-------~~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-------GQKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-------CSEEEEEECG--GGCCEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCC-------CCceEEEEec--CCCCceEEEEEcC
Confidence            457888999999765432  46699999988632111       1122456654  7899999999753

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.47  E-value=0.00018  Score=44.16  Aligned_cols=72  Identities=14%  Similarity=0.173  Sum_probs=43.3

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCC--eEEEeE--cCeEe------ccCCC---------ceEEecCCCccccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEP--TLHWKK--NGQFI------DLESS---------KRVSILGDPWFDSRRSRSIFGS  267 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~--~g~~~------~~~~~---------~~~~~~~~~~~~~~~~~~l~i~  267 (292)
                      ...+++|+++.|+|.+ .|....  .+.|.+  .|+-+      ....+         .|+.+..+.   ......|.+.
T Consensus         9 ~~~~kpg~sl~lsC~~-SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~---s~~t~yLq~~   84 (117)
T d1jnhb1           9 AELARPGASVKLSCRT-SGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADR---SSSIVYLQLN   84 (117)
T ss_dssp             CEECCTTCCEEEEEEE-ESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEET---TTTEEEEEEC
T ss_pred             CceECCCCCEEEEEEE-cCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccC---ccceeeeccc
Confidence            3456889999999998 664433  678887  23222      11111         122222111   1222357788


Q ss_pred             cccccccceeEEEEe
Q psy15128        268 VLGALSDDQWKLIAK  282 (292)
Q Consensus       268 ~~~~~~~g~y~C~a~  282 (292)
                      .++.+|.+.|.|...
T Consensus        85 ~L~~eDTAvYYCAr~   99 (117)
T d1jnhb1          85 SLTSEDSAVYSCSRG   99 (117)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEeec
Confidence            999999999999653

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.46  E-value=0.00015  Score=44.82  Aligned_cols=72  Identities=22%  Similarity=0.293  Sum_probs=44.1

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCC--eEEEeEc--CeEe------ccCCCc---------eEEecCCCccccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEP--TLHWKKN--GQFI------DLESSK---------RVSILGDPWFDSRRSRSIFGS  267 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~--g~~~------~~~~~~---------~~~~~~~~~~~~~~~~~l~i~  267 (292)
                      ...+++|+++.|+|.+ .|....  .+.|.+-  |+-+      ....+.         |+.+..+.   ......|.+.
T Consensus         9 ~~~~kpg~sl~LsC~~-SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~---s~nt~yLqm~   84 (119)
T d1rz7h1           9 AEVKKPGATVKISCKA-SGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADT---STDTGYLELS   84 (119)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEET---TTTEEEEEEC
T ss_pred             CceECCCCCEEEEEEE-cCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEeccc---CceEEEeeee
Confidence            3467899999999998 665433  6788772  3222      111111         22221111   1233357888


Q ss_pred             cccccccceeEEEEe
Q psy15128        268 VLGALSDDQWKLIAK  282 (292)
Q Consensus       268 ~~~~~~~g~y~C~a~  282 (292)
                      .++.+|.+.|+|...
T Consensus        85 sL~~eDTAvYYCAr~   99 (119)
T d1rz7h1          85 SLRSEDTAVYYCAAD   99 (119)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ccCcccceEEEEeec
Confidence            999999999999764

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.46  E-value=0.00022  Score=43.74  Aligned_cols=71  Identities=17%  Similarity=0.227  Sum_probs=43.2

Q ss_pred             eEEeCCCceEEEeeCCCCCCCC--eEEEeEc--CeEe------ccCCCc--------eEEecCCCccccccccccccccc
Q psy15128        208 TRVASGETALLECGPPKGQPEP--TLHWKKN--GQFI------DLESSK--------RVSILGDPWFDSRRSRSIFGSVL  269 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~--g~~~------~~~~~~--------~~~~~~~~~~~~~~~~~l~i~~~  269 (292)
                      ..+++|++++|+|.+ .|....  .+.|.+.  |+-+      ......        |+.+..+   ..+....|.+..+
T Consensus        10 ~~vkPg~sl~LsC~~-SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D---~s~n~~~L~~~~l   85 (116)
T d1a2yb_          10 GLVAPSQSLSITCTV-SGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKD---NSKSQVFLKMNSL   85 (116)
T ss_dssp             SEECTTSCEEEEEEE-ESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEE---GGGTEEEEEECSC
T ss_pred             ceECCCCCeEEEEEE-cccccCCCCCccceECCCcceeeeeecCccccceecccccccceEecc---CCCceEEcceeee
Confidence            457899999999998 654333  6778872  3322      111111        1122111   1122335888899


Q ss_pred             cccccceeEEEEe
Q psy15128        270 GALSDDQWKLIAK  282 (292)
Q Consensus       270 ~~~~~g~y~C~a~  282 (292)
                      +.+|.+.|+|...
T Consensus        86 ~~eDTAvYYCAr~   98 (116)
T d1a2yb_          86 HTDDTARYYCARE   98 (116)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             eeccceEEEEEEe
Confidence            9999999999754

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.46  E-value=0.00018  Score=43.95  Aligned_cols=73  Identities=14%  Similarity=0.111  Sum_probs=42.8

Q ss_pred             eEEeCCCceEEEeeCCCCCCCC--eEEEeE--cCeEe------ccCCCc-eEEecCCCcccc-----ccccccccccccc
Q psy15128        208 TRVASGETALLECGPPKGQPEP--TLHWKK--NGQFI------DLESSK-RVSILGDPWFDS-----RRSRSIFGSVLGA  271 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~~p~~--~~~W~~--~g~~~------~~~~~~-~~~~~~~~~~~~-----~~~~~l~i~~~~~  271 (292)
                      ..+++|++++|+|.+ .|....  .+.|.+  .|+-+      ....+. .+...-.+.+..     +....|.|..++.
T Consensus        10 ~~vkpG~sl~LsC~~-SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~   88 (114)
T d1indh1          10 DSVKPGGSLKLSCAA-SGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRS   88 (114)
T ss_dssp             CEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEE-CccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeecc
Confidence            467899999999998 665433  577887  23222      111111 111111111111     2223588899999


Q ss_pred             cccceeEEEE
Q psy15128        272 LSDDQWKLIA  281 (292)
Q Consensus       272 ~~~g~y~C~a  281 (292)
                      +|.+.|.|..
T Consensus        89 eDtAvYYCA~   98 (114)
T d1indh1          89 EDTALYFCAS   98 (114)
T ss_dssp             GGCEEEEEEC
T ss_pred             CcccEEEECC
Confidence            9999999964

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.45  E-value=0.00015  Score=45.16  Aligned_cols=77  Identities=18%  Similarity=0.195  Sum_probs=45.0

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCC--eEEEeE--cCeEe------ccCCCc-eEEecCCCcccc-----cccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEP--TLHWKK--NGQFI------DLESSK-RVSILGDPWFDS-----RRSRSIFGSVLG  270 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~--~g~~~------~~~~~~-~~~~~~~~~~~~-----~~~~~l~i~~~~  270 (292)
                      ...+++|++++|+|.+ .|...-  .+.|.+  .|+-+      ....+. .+...-.+.+..     .....|.+..++
T Consensus         9 ~~~vkPg~sl~LsC~~-SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~   87 (126)
T d1dfbh1           9 GGLVQPGRSLRLSCAA-SGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLR   87 (126)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEE-CCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeec
Confidence            3467899999999998 665433  678887  23322      111111 111111111111     222357888999


Q ss_pred             ccccceeEEEEeec
Q psy15128        271 ALSDDQWKLIAKNI  284 (292)
Q Consensus       271 ~~~~g~y~C~a~n~  284 (292)
                      .+|.+.|.|.....
T Consensus        88 ~eDtavYYCAr~~~  101 (126)
T d1dfbh1          88 AEDMALYYCVKGRD  101 (126)
T ss_dssp             GGGCEEEEEEEEEC
T ss_pred             cCcceEEEEEeccC
Confidence            99999999986543

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.45  E-value=0.00012  Score=44.97  Aligned_cols=74  Identities=14%  Similarity=0.148  Sum_probs=43.2

Q ss_pred             ceEEeCCCceEEEeeCCCCCC--CCeEEEeE--cCeEec------cCCCc-eEEecCCCcccc-----cccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQP--EPTLHWKK--NGQFID------LESSK-RVSILGDPWFDS-----RRSRSIFGSVLG  270 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~--~g~~~~------~~~~~-~~~~~~~~~~~~-----~~~~~l~i~~~~  270 (292)
                      ...+++|++++|+|.+ .|..  .-.+.|++  .|+.+.      ...+. .....-.+.+..     .....|.|..++
T Consensus         9 ~~~~kPG~sl~LsC~~-SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~   87 (115)
T d1f3dh1           9 PELVKPGASVKVSCKA-SGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLT   87 (115)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CcEECCCCCEEEEEEE-ccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecC
Confidence            3457899999999998 5543  33688887  243221      11111 111111111111     222358899999


Q ss_pred             ccccceeEEEE
Q psy15128        271 ALSDDQWKLIA  281 (292)
Q Consensus       271 ~~~~g~y~C~a  281 (292)
                      .+|.+.|.|..
T Consensus        88 ~eDtAvYYCAr   98 (115)
T d1f3dh1          88 FEDSAVYYCAN   98 (115)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cCCcEEEEEec
Confidence            99999999954

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.45  E-value=9.6e-05  Score=45.89  Aligned_cols=71  Identities=15%  Similarity=0.207  Sum_probs=42.3

Q ss_pred             eEEeCCCceEEEeeCCCCCC--CCeEEEeE--cCeEe------ccCCC---------ceEEecCCCcccccccccccccc
Q psy15128        208 TRVASGETALLECGPPKGQP--EPTLHWKK--NGQFI------DLESS---------KRVSILGDPWFDSRRSRSIFGSV  268 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~--~g~~~------~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~  268 (292)
                      ..+++|++++|+|.+ .|..  .-.+.|++  .|+.+      ....+         .|+.+..+.   ......|.|..
T Consensus        10 ~~~kpG~Sv~LsC~~-SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~---s~~~~~L~i~~   85 (119)
T d1qnzh_          10 ELVKPGASVKMSCKA-SGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEK---SSSTVYLEFSR   85 (119)
T ss_dssp             CEECTTEEEEEEEEE-ETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEET---TTTEEEEEEEE
T ss_pred             ceECCCCCEEEEEEE-eccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeeccc---ccceeeeeecc
Confidence            367889999999997 5432  23578987  23321      11111         112111110   12223588899


Q ss_pred             ccccccceeEEEEe
Q psy15128        269 LGALSDDQWKLIAK  282 (292)
Q Consensus       269 ~~~~~~g~y~C~a~  282 (292)
                      +..+|++.|.|...
T Consensus        86 L~~eDsAvYYCA~~   99 (119)
T d1qnzh_          86 LTSDDSAVYYCAIH   99 (119)
T ss_dssp             ECGGGCEEEEEEEC
T ss_pred             cCccceeEEEEEEe
Confidence            99999999999653

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.43  E-value=0.00026  Score=43.75  Aligned_cols=72  Identities=18%  Similarity=0.227  Sum_probs=43.6

Q ss_pred             ceEEeCCCceEEEeeCCCCCC--CCeEEEeEc--CeEe------ccCCCc---------eEEecCCCccccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQP--EPTLHWKKN--GQFI------DLESSK---------RVSILGDPWFDSRRSRSIFGS  267 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--g~~~------~~~~~~---------~~~~~~~~~~~~~~~~~l~i~  267 (292)
                      ...+++|++++|+|.+ .|+.  .-.+.|.+.  |+-+      ....+.         |+.+..+.   .+....|.+.
T Consensus         9 ~~lvkPg~sl~LsC~~-SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~---s~~t~yLq~~   84 (121)
T d2p49b1           9 GGLVQAGGSLRLSCAA-SGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDK---GKNTVYLQMD   84 (121)
T ss_dssp             CEEEETTCCEEEEEEE-ESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTT---STTEEEEEEC
T ss_pred             CceECCCCCeEEEEEE-cCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecC---CceEEEEEee
Confidence            3467899999999998 5543  336778872  3221      111111         22222221   1222357788


Q ss_pred             cccccccceeEEEEe
Q psy15128        268 VLGALSDDQWKLIAK  282 (292)
Q Consensus       268 ~~~~~~~g~y~C~a~  282 (292)
                      .++.+|.+.|.|...
T Consensus        85 ~L~~eDtAvYYCAr~   99 (121)
T d2p49b1          85 SLKPEDTATYYCAAG   99 (121)
T ss_dssp             SCCGGGCEEEEEEES
T ss_pred             eccccceeEEeeecc
Confidence            999999999999864

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00047  Score=40.93  Aligned_cols=69  Identities=12%  Similarity=0.109  Sum_probs=49.5

Q ss_pred             CCccEEecCCcEEEEEEEeeeCCCeeE-EEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeC
Q psy15128         43 PQDQKVGLNGIASFQCVAEGSPLPSVF-WTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV  116 (292)
Q Consensus        43 ~~~~~~~~g~~~~l~C~~~~~~~~~v~-W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~  116 (292)
                      +..+.+.+|+++.+.|.+.. |...++ |...+..+.    ........+....++|.++...+.|.|.|.+...
T Consensus        12 p~~V~v~eg~~~vIPC~vT~-P~~~VtL~~~~~~~~~----p~g~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~~~   81 (95)
T d1fltx_          12 PEIIHMTEGRELVIPCRVTS-PNITVTLKKFPLDTLI----PDGKRIIWDSRKGFIISNATYKEIGLLTCEATVN   81 (95)
T ss_dssp             CEEEEECTTSCEEECCCBSC-TTSCCEEEETTTEEEC----CCSSSEEEETTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEEeCCCCEEEEccCCC-CCceeEEEeccCCccC----CCCCEEEECCCCCEEEeCCCcccCeEEEEEEEEC
Confidence            34467888999999999974 555655 444555442    1123345566678999999999999999999765

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.41  E-value=0.00018  Score=44.27  Aligned_cols=74  Identities=14%  Similarity=0.092  Sum_probs=43.4

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCC--eEEEeE--cCeEe------ccCCCc-eEEecCCCccc-----ccccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEP--TLHWKK--NGQFI------DLESSK-RVSILGDPWFD-----SRRSRSIFGSVLG  270 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~--~g~~~------~~~~~~-~~~~~~~~~~~-----~~~~~~l~i~~~~  270 (292)
                      ...+++|+++.|+|.+ .|...-  .+.|.+  .|+-+      ....+. .+...-.+.+.     ......|.+..++
T Consensus         9 ~~~~kpg~sl~lsC~~-SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~   87 (118)
T d2jelh1           9 PELVRPGVSVKISCKG-SGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLT   87 (118)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEE-cCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccc
Confidence            4567899999999998 665433  678887  23322      111111 11111111111     1222357788999


Q ss_pred             ccccceeEEEE
Q psy15128        271 ALSDDQWKLIA  281 (292)
Q Consensus       271 ~~~~g~y~C~a  281 (292)
                      .+|.+.|+|..
T Consensus        88 ~eDTAvYYCAr   98 (118)
T d2jelh1          88 SEDSAIYYCAR   98 (118)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cCcceeeeEEE
Confidence            99999999943

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.40  E-value=0.00018  Score=44.67  Aligned_cols=75  Identities=13%  Similarity=0.144  Sum_probs=44.2

Q ss_pred             eEEeCCCceEEEeeCCCCCCCC--eEEEeE--cCeEe------ccCC-CceEEecCCCccc-----cccccccccccccc
Q psy15128        208 TRVASGETALLECGPPKGQPEP--TLHWKK--NGQFI------DLES-SKRVSILGDPWFD-----SRRSRSIFGSVLGA  271 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~~p~~--~~~W~~--~g~~~------~~~~-~~~~~~~~~~~~~-----~~~~~~l~i~~~~~  271 (292)
                      ..+++|++++|+|.+ .|...-  .+.|.+  .|+-+      .... ...+...-.+.+.     .+....|.+..++.
T Consensus        10 ~lvkPg~sl~LsC~~-SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~   88 (122)
T d1bz7b1          10 GLVQPGGSRKLSCAA-SGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRS   88 (122)
T ss_dssp             EEECTTCCEEEEEEE-ESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEE-cCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecc
Confidence            457899999999998 665433  578887  23222      1111 1111111112211     12334577889999


Q ss_pred             cccceeEEEEee
Q psy15128        272 LSDDQWKLIAKN  283 (292)
Q Consensus       272 ~~~g~y~C~a~n  283 (292)
                      +|.+.|.|...+
T Consensus        89 eDTAvYYCAr~~  100 (122)
T d1bz7b1          89 EDTAIYYCTRGG  100 (122)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             cCceEEEeecCC
Confidence            999999997643

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.40  E-value=0.00037  Score=43.70  Aligned_cols=74  Identities=9%  Similarity=0.127  Sum_probs=42.0

Q ss_pred             EEeCCCceEEEeeCCCCCC----CCeEEEeE--cCeEec-----cCCCce-EEecCCCcccc-----ccccccccccccc
Q psy15128        209 RVASGETALLECGPPKGQP----EPTLHWKK--NGQFID-----LESSKR-VSILGDPWFDS-----RRSRSIFGSVLGA  271 (292)
Q Consensus       209 ~~~~g~~~~l~C~~~~~~p----~~~~~W~~--~g~~~~-----~~~~~~-~~~~~~~~~~~-----~~~~~l~i~~~~~  271 (292)
                      .+++|++++|+|.+ .|..    ...+.|++  .|+.+.     ...+.. ....-.+.+..     .....|.|..++.
T Consensus        11 lvkPg~sv~LsC~~-SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~   89 (126)
T d1etzb1          11 ILQPSQTLSLTCSF-SGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDT   89 (126)
T ss_dssp             EECTTCCEEEEEEE-ESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEE-eCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccc
Confidence            57889999999997 5432    22567976  232221     011111 00000111111     2234688999999


Q ss_pred             cccceeEEEEee
Q psy15128        272 LSDDQWKLIAKN  283 (292)
Q Consensus       272 ~~~g~y~C~a~n  283 (292)
                      +|++.|.|....
T Consensus        90 eDtAvYyCAr~~  101 (126)
T d1etzb1          90 SDTATYHCARRT  101 (126)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             cccceEEEEEec
Confidence            999999998543

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.40  E-value=7.3e-05  Score=45.90  Aligned_cols=69  Identities=16%  Similarity=0.396  Sum_probs=44.8

Q ss_pred             ccEEecCCcEEEEEEEeee--CCCeeEEEEC--CeEEe----eccC--C------CcceeEEeeec-----EEEEccCCC
Q psy15128         45 DQKVGLNGIASFQCVAEGS--PLPSVFWTQE--GSQVL----MFPG--N------AYGHLHVTQEG-----TLRIQGVQK  103 (292)
Q Consensus        45 ~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~--~~~~~----~~~~--~------~~~~~~~~~~~-----~l~i~~~~~  103 (292)
                      ...+.+|++++|.|.+.|+  ....+.|+|.  ++.+.    +...  .      ..+++.+..+.     .|.|.+++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~~   88 (117)
T d1b2wh1           9 GGVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRP   88 (117)
T ss_dssp             CCEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccccC
Confidence            4457889999999999875  3446778873  22111    1111  1      02344444322     589999999


Q ss_pred             CCCeEEEEEE
Q psy15128        104 EDAGFFVCSA  113 (292)
Q Consensus       104 ~d~g~Y~C~~  113 (292)
                      +|++.|.|..
T Consensus        89 eDTAvYYCAr   98 (117)
T d1b2wh1          89 EDTAVYYCAR   98 (117)
T ss_dssp             GGCEEEECCE
T ss_pred             CcceEEEEcc
Confidence            9999999964

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.40  E-value=0.00019  Score=44.51  Aligned_cols=75  Identities=15%  Similarity=0.146  Sum_probs=43.8

Q ss_pred             ceEEeCCCceEEEeeCCCCCC--CCeEEEeE--cCeEec------cCCCc-eEEecCCCccc-----ccccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQP--EPTLHWKK--NGQFID------LESSK-RVSILGDPWFD-----SRRSRSIFGSVLG  270 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~--~g~~~~------~~~~~-~~~~~~~~~~~-----~~~~~~l~i~~~~  270 (292)
                      ...+++|++++|+|.+ .|..  .-.+.|++  .|+.+.      ...+. .+...-.+.+.     .+....|.|..++
T Consensus         9 ~~~vkpG~sl~LsC~~-SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~   87 (120)
T d1pg7x1           9 PELVKPGASVKISCKA-SGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLT   87 (120)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CcEECCCCCEEEEEEE-ccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccC
Confidence            3467899999999998 5543  23678987  243221      11111 11110011111     1222357888999


Q ss_pred             ccccceeEEEEe
Q psy15128        271 ALSDDQWKLIAK  282 (292)
Q Consensus       271 ~~~~g~y~C~a~  282 (292)
                      .+|.+.|.|...
T Consensus        88 ~eDtA~YYCAr~   99 (120)
T d1pg7x1          88 SNDSAVYYCARE   99 (120)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEeeec
Confidence            999999999865

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.39  E-value=0.00024  Score=44.35  Aligned_cols=74  Identities=16%  Similarity=0.139  Sum_probs=45.2

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCC--eEEEeE--cCeEe------ccCCC---------ceEEecCCCccccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEP--TLHWKK--NGQFI------DLESS---------KRVSILGDPWFDSRRSRSIFGS  267 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~--~g~~~------~~~~~---------~~~~~~~~~~~~~~~~~~l~i~  267 (292)
                      ...+++|+++.|+|.+ .|....  .+.|.+  .|+-+      ....+         .|+.+..+.   .+....|.+.
T Consensus         9 ~~~~kpg~sl~LsC~~-SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~---s~~t~yL~~~   84 (128)
T d2nxyd1           9 AEVKKPGSSVKVSCKA-SGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADK---STSTVYLELR   84 (128)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEET---TTTEEEEEEC
T ss_pred             CceECCCCCEEEEEEE-cCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecC---CCceEEeeee
Confidence            4467899999999998 665544  567876  23222      11111         122222111   1233457788


Q ss_pred             cccccccceeEEEEeec
Q psy15128        268 VLGALSDDQWKLIAKNI  284 (292)
Q Consensus       268 ~~~~~~~g~y~C~a~n~  284 (292)
                      .++.+|.+.|+|.....
T Consensus        85 sL~~eDTA~YYCAr~~~  101 (128)
T d2nxyd1          85 NLRSDDTAVYFCAGVYE  101 (128)
T ss_dssp             SCCGGGCEEEEEEEEEC
T ss_pred             eccccCceEEEEeEEec
Confidence            99999999999997543

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.39  E-value=0.00021  Score=43.94  Aligned_cols=71  Identities=17%  Similarity=0.198  Sum_probs=42.8

Q ss_pred             ceEEeCCCceEEEeeCCCCCC--CCeEEEeE--cCeEe------ccCCCc---------eEEecCCCccccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQP--EPTLHWKK--NGQFI------DLESSK---------RVSILGDPWFDSRRSRSIFGS  267 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~--~g~~~------~~~~~~---------~~~~~~~~~~~~~~~~~l~i~  267 (292)
                      ...+++|++++|+|.+ .|..  .-.+.|.+  .|+-+      ......         |+.+..+   .......|.|.
T Consensus         9 ~~~~kPG~sl~LsC~~-SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D---~s~~~~~L~i~   84 (117)
T d1mfah1           9 TVVARPGASVKMSCKA-SGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAV---TSTTTAYMELS   84 (117)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEE---TTTTEEEEEEC
T ss_pred             CceECCCCCEEEEEEE-cccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcc---cCccEeEeeec
Confidence            4567899999999998 5643  23577876  34322      111111         1111111   11222357888


Q ss_pred             cccccccceeEEEE
Q psy15128        268 VLGALSDDQWKLIA  281 (292)
Q Consensus       268 ~~~~~~~g~y~C~a  281 (292)
                      .++.+|.+.|.|..
T Consensus        85 ~L~~eDtAvYYCAr   98 (117)
T d1mfah1          85 SLTSEDSAVYYCTR   98 (117)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEec
Confidence            99999999999964

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.39  E-value=0.00025  Score=43.95  Aligned_cols=75  Identities=13%  Similarity=0.188  Sum_probs=43.7

Q ss_pred             eEEeCCCceEEEeeCCCCCCCC--eEEEeE--cCeEe------ccCCCc-eEEecCCCccc-----cccccccccccccc
Q psy15128        208 TRVASGETALLECGPPKGQPEP--TLHWKK--NGQFI------DLESSK-RVSILGDPWFD-----SRRSRSIFGSVLGA  271 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~~p~~--~~~W~~--~g~~~------~~~~~~-~~~~~~~~~~~-----~~~~~~l~i~~~~~  271 (292)
                      ..+++|++++|+|.+ .|...-  .+.|.+  .|+-+      ....+. .+...-.+.+.     ......|.|..++.
T Consensus        10 ~lvkPG~sl~LsC~~-SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~   88 (123)
T d1mqkh_          10 DLVQPGGSLKLSCAA-SGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKS   88 (123)
T ss_dssp             CEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEE-CcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeecc
Confidence            467899999999998 665433  578877  23322      111111 11111111111     12233588889999


Q ss_pred             cccceeEEEEee
Q psy15128        272 LSDDQWKLIAKN  283 (292)
Q Consensus       272 ~~~g~y~C~a~n  283 (292)
                      +|.+.|.|....
T Consensus        89 eDtAvYYCAr~~  100 (123)
T d1mqkh_          89 EDTAMYYCVRHE  100 (123)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CcccceeEEecC
Confidence            999999997653

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.38  E-value=0.00025  Score=43.71  Aligned_cols=75  Identities=8%  Similarity=0.070  Sum_probs=43.8

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCC---eEEEeE--cCeEe------ccCCCceEEecCCCcccc-----cccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEP---TLHWKK--NGQFI------DLESSKRVSILGDPWFDS-----RRSRSIFGSVLG  270 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~---~~~W~~--~g~~~------~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~  270 (292)
                      ...+++|+++.|+|.+ .|....   .+.|.+  .|+-+      .......+...-.+.+..     +....|.+..++
T Consensus         9 ~~~vkPg~sl~LsC~~-SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~   87 (119)
T d1ncwh1           9 PGLVKPSQSLSLTCTV-TGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVT   87 (119)
T ss_dssp             CSEECTTSCEEEEEEE-ESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CcEECCCCCEEEEEEE-ccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccc
Confidence            3467899999999998 665442   467876  34432      111111111111111111     222357788999


Q ss_pred             ccccceeEEEEe
Q psy15128        271 ALSDDQWKLIAK  282 (292)
Q Consensus       271 ~~~~g~y~C~a~  282 (292)
                      .+|...|+|...
T Consensus        88 ~eDTAvYYCAr~   99 (119)
T d1ncwh1          88 TEDTATYYCAGL   99 (119)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCCceEEEEeEe
Confidence            999999999643

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.38  E-value=0.00037  Score=42.89  Aligned_cols=75  Identities=17%  Similarity=0.111  Sum_probs=43.4

Q ss_pred             ceEEeCCCceEEEeeCCCCCC--CCeEEEeE--cCeEe------ccCCCc-eEEecCCCcc-----cccccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQP--EPTLHWKK--NGQFI------DLESSK-RVSILGDPWF-----DSRRSRSIFGSVLG  270 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~--~g~~~------~~~~~~-~~~~~~~~~~-----~~~~~~~l~i~~~~  270 (292)
                      ...+++|+++.|+|.+ .|..  .-.+.|.+  .|+-+      ....+. .+...-.+.+     .......|.|..++
T Consensus         9 ~~~~kPg~sl~LsC~~-SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~   87 (118)
T d1ct8b1           9 AVLVKPGASVKLSCKT-SGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLT   87 (118)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEE-ccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccC
Confidence            4567899999999998 5543  23678877  23322      111111 1111111111     11233467788999


Q ss_pred             ccccceeEEEEe
Q psy15128        271 ALSDDQWKLIAK  282 (292)
Q Consensus       271 ~~~~g~y~C~a~  282 (292)
                      .+|.+.|+|...
T Consensus        88 ~eDtAvYYCAr~   99 (118)
T d1ct8b1          88 TEDSAIYYCARY   99 (118)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEeee
Confidence            999999999653

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.38  E-value=0.00024  Score=44.06  Aligned_cols=76  Identities=13%  Similarity=0.085  Sum_probs=44.3

Q ss_pred             eEEeCCCceEEEeeCCCCCCC--CeEEEeE--cCeEe------ccCCCc-eEEecCCCcccc-----ccccccccccccc
Q psy15128        208 TRVASGETALLECGPPKGQPE--PTLHWKK--NGQFI------DLESSK-RVSILGDPWFDS-----RRSRSIFGSVLGA  271 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~~p~--~~~~W~~--~g~~~------~~~~~~-~~~~~~~~~~~~-----~~~~~l~i~~~~~  271 (292)
                      ..+++|+++.|+|.+ .|+..  --+.|.+  .|+-+      ....+. .+...-.+.+..     .....|.|..++.
T Consensus        10 ~~vkpg~sl~LsC~~-SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~   88 (121)
T d1ol0a_          10 GLVQPGGSLRLSCAA-SGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRA   88 (121)
T ss_dssp             EEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEE-cCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeeccc
Confidence            457899999999998 56432  2578887  23322      111111 111111111111     2223588889999


Q ss_pred             cccceeEEEEeec
Q psy15128        272 LSDDQWKLIAKNI  284 (292)
Q Consensus       272 ~~~g~y~C~a~n~  284 (292)
                      +|.+.|.|.....
T Consensus        89 eDtAvYYCAr~~~  101 (121)
T d1ol0a_          89 EDTAVYYCAREPR  101 (121)
T ss_dssp             GGCEEEEEEECCS
T ss_pred             ccceEEEEEEecC
Confidence            9999999976543

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=7.3e-05  Score=45.63  Aligned_cols=72  Identities=13%  Similarity=0.165  Sum_probs=42.4

Q ss_pred             CCCceEEEeeCCCCCCCC--eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128        212 SGETALLECGPPKGQPEP--TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN  286 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~~--~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g  286 (292)
                      .++.++|.|.|.+.+|+.  .+.|.++++.+.... .......++.|...  ..|.+..-.......|+|.|.....
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~-~~~~~~~~gtys~~--S~L~v~~~~W~~~~~ytC~V~H~s~   91 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVN-FPPALASGGRYTMS--NQLTLPAVECPEGESVKCSVQHDSN   91 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEE-CCCEECSSSCEEEE--EEEEECGGGSCTTCEEEEEEEETTS
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeE-eeeEecCCCCEEEE--EEEEEeHHHccCCCEEEEEEEECCC
Confidence            357799999994335543  678888887653211 22233444444322  3455554444445589999987544

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.36  E-value=0.00021  Score=43.66  Aligned_cols=74  Identities=18%  Similarity=0.082  Sum_probs=43.5

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCC--eEEEeE--cCeEe------ccCCCc-eEEecCCCcccc-----cccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEP--TLHWKK--NGQFI------DLESSK-RVSILGDPWFDS-----RRSRSIFGSVLG  270 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~--~g~~~------~~~~~~-~~~~~~~~~~~~-----~~~~~l~i~~~~  270 (292)
                      ...+++|+++.|+|.+ .|....  .+.|.+  .|+-+      ....+. .+...-.+.+..     .....|.+..++
T Consensus         9 ~~~~kPg~sl~LsC~~-SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~   87 (116)
T d1mjuh1           9 AELVKPGASVKLSCKA-SGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLT   87 (116)
T ss_dssp             EEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CcEECCCCCEEEEEEE-ccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccC
Confidence            5678899999999998 664433  677877  23322      111111 111111111111     222357788999


Q ss_pred             ccccceeEEEE
Q psy15128        271 ALSDDQWKLIA  281 (292)
Q Consensus       271 ~~~~g~y~C~a  281 (292)
                      .+|.+.|.|..
T Consensus        88 ~eDtAvYYCAr   98 (116)
T d1mjuh1          88 SDDSAVYYCAN   98 (116)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCCceEEEEcc
Confidence            99999999964

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.35  E-value=0.00042  Score=42.71  Aligned_cols=71  Identities=20%  Similarity=0.290  Sum_probs=43.0

Q ss_pred             eEEeCCCceEEEeeCCCCCC--CCeEEEeE--cCeEec------cC-CC----------ceEEecCCCcccccccccccc
Q psy15128        208 TRVASGETALLECGPPKGQP--EPTLHWKK--NGQFID------LE-SS----------KRVSILGDPWFDSRRSRSIFG  266 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~--~g~~~~------~~-~~----------~~~~~~~~~~~~~~~~~~l~i  266 (292)
                      ..+++|++++|+|.+ .|..  .-.+.|.+  .|+-++      .. .+          .|+.+..+   ..+....|.|
T Consensus        10 ~~vkpG~sl~LsC~~-SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D---~s~n~~~L~~   85 (120)
T d1dlfh_          10 GLVQPGGSMKLSCAT-SGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRD---DSKRRVYLQM   85 (120)
T ss_dssp             CEECTTCCEEEEEEE-ESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEE---TTTTEEEEEE
T ss_pred             ceECCCCCeEEEEEE-CCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecc---cccceeccce
Confidence            357889999999998 5543  33678887  343321      10 11          11222111   1122235788


Q ss_pred             ccccccccceeEEEEe
Q psy15128        267 SVLGALSDDQWKLIAK  282 (292)
Q Consensus       267 ~~~~~~~~g~y~C~a~  282 (292)
                      ..++.+|.+.|.|...
T Consensus        86 ~~L~~eDtAvYYCA~~  101 (120)
T d1dlfh_          86 NTLRAEDTGIYYCTGI  101 (120)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             eeccCCCceEEEeeEe
Confidence            8999999999999653

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.35  E-value=0.00025  Score=44.82  Aligned_cols=75  Identities=13%  Similarity=0.222  Sum_probs=43.1

Q ss_pred             eEEeCCCceEEEeeCCCCCC----CCeEEEeEc--CeEec-----cCCCc-eEEecCCCccc-----ccccccccccccc
Q psy15128        208 TRVASGETALLECGPPKGQP----EPTLHWKKN--GQFID-----LESSK-RVSILGDPWFD-----SRRSRSIFGSVLG  270 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~~p----~~~~~W~~~--g~~~~-----~~~~~-~~~~~~~~~~~-----~~~~~~l~i~~~~  270 (292)
                      ..+++|++++|+|.+ .|..    ...+.|++.  |+.++     ...+. .....-.+.+.     .+....|.|..++
T Consensus        10 ~~vkpg~Sl~LsC~~-SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~   88 (132)
T d1tjgh1          10 PLVKPTQTLTLTCSF-SGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVS   88 (132)
T ss_dssp             SEECTTCCEEEEEEE-ESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             eeECCCCCeEEEEEE-eCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCC
Confidence            357889999999997 5433    235889872  22221     01111 10000011111     1223458899999


Q ss_pred             ccccceeEEEEee
Q psy15128        271 ALSDDQWKLIAKN  283 (292)
Q Consensus       271 ~~~~g~y~C~a~n  283 (292)
                      .+|++.|.|....
T Consensus        89 ~eDtAvYYCAr~~  101 (132)
T d1tjgh1          89 PVDTATYFCAHRR  101 (132)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cccceEEEEEEec
Confidence            9999999997653

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.35  E-value=0.00036  Score=43.37  Aligned_cols=72  Identities=17%  Similarity=0.237  Sum_probs=43.7

Q ss_pred             eEEeCCCceEEEeeCCCCCC--CCeEEEeE--cCeEec------cCCC---------ceEEecCCCcccccccccccccc
Q psy15128        208 TRVASGETALLECGPPKGQP--EPTLHWKK--NGQFID------LESS---------KRVSILGDPWFDSRRSRSIFGSV  268 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~--~g~~~~------~~~~---------~~~~~~~~~~~~~~~~~~l~i~~  268 (292)
                      ..+++|++++|+|.+ .|..  .-.+.|.+  .|+-++      ....         .|+.+..+.   .+....|.|..
T Consensus        10 ~lvkpg~sl~LsC~~-SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~---s~~t~~Lqm~s   85 (125)
T d1op3h1          10 GLVKAGGSLILSCGV-SNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDD---LEDFVYLQMHK   85 (125)
T ss_dssp             EEEETTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEET---TTTEEEEEECS
T ss_pred             ceECCCCCeEEEEeE-CCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccC---ccceEeeeeec
Confidence            467899999999998 5543  23578887  232221      1111         122221111   12334678889


Q ss_pred             ccccccceeEEEEee
Q psy15128        269 LGALSDDQWKLIAKN  283 (292)
Q Consensus       269 ~~~~~~g~y~C~a~n  283 (292)
                      ++.+|.+.|.|....
T Consensus        86 L~~eDTAvYYCAr~~  100 (125)
T d1op3h1          86 MRVEDTAIYYCARKG  100 (125)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             cCCccceeEeEeecc
Confidence            999999999997643

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.34  E-value=0.00033  Score=43.55  Aligned_cols=74  Identities=9%  Similarity=0.065  Sum_probs=41.9

Q ss_pred             eEEeCCCceEEEeeCCCCCCC----CeEEEeE--cCeEe------ccCCCceEEecCCCcccc-----cccccccccccc
Q psy15128        208 TRVASGETALLECGPPKGQPE----PTLHWKK--NGQFI------DLESSKRVSILGDPWFDS-----RRSRSIFGSVLG  270 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~~p~----~~~~W~~--~g~~~------~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~  270 (292)
                      ..+++|++++|+|.+ .|...    -.+.|++  .|+.+      ......+....-.+.+..     +....|.|..++
T Consensus        10 ~~vkpg~sv~LsC~~-SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~   88 (123)
T d1r0ah1          10 GIVQPSQPFRLTCTF-SGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVE   88 (123)
T ss_dssp             SEECTTCCEEEEEEE-ESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEE-cCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecc
Confidence            357889999999997 54321    2467987  23222      111111111000111111     222358888999


Q ss_pred             ccccceeEEEEe
Q psy15128        271 ALSDDQWKLIAK  282 (292)
Q Consensus       271 ~~~~g~y~C~a~  282 (292)
                      .+|+..|.|...
T Consensus        89 ~eDsAvYyCAr~  100 (123)
T d1r0ah1          89 TADTAIYYCAQS  100 (123)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceEEeeccc
Confidence            999999999754

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00034  Score=39.83  Aligned_cols=62  Identities=15%  Similarity=0.293  Sum_probs=42.4

Q ss_pred             ecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCC-CCCeEEEEEEEe
Q psy15128         49 GLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQK-EDAGFFVCSALS  115 (292)
Q Consensus        49 ~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~Y~C~~~~  115 (292)
                      ..|.+|+|+|..  .....+.|.+++..+....   ...........|.+.+.+. +++|.|.|.+..
T Consensus         8 ISGTtV~LTCP~--~~~~~i~W~~n~~~~~~~~---~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_           8 ISGTTVILTCPQ--YPGSEILWQHNDKNIGGDE---DDKNIGSDEDHLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             EETTEEEEECSS--CTTSCEEEEETTEEESSSC---SCTTEEEETTEEEETTCCHHHHCEEEEEEETT
T ss_pred             EeCCEEEEECCC--CCCCceeeeeccccccCCC---cccccccccceEEecccCccccCceEEEEcCC
Confidence            458999999974  2446799999988763111   1111223345788888876 799999998853

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.33  E-value=0.00042  Score=43.36  Aligned_cols=73  Identities=12%  Similarity=0.161  Sum_probs=44.4

Q ss_pred             ceEEeCCCceEEEeeCCCCCC--CCeEEEeE--cCeEec------cCCC---------ceEEecCCCccccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQP--EPTLHWKK--NGQFID------LESS---------KRVSILGDPWFDSRRSRSIFGS  267 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~--~g~~~~------~~~~---------~~~~~~~~~~~~~~~~~~l~i~  267 (292)
                      ...+++|+++.|+|.+ .|..  .-.+.|.+  .|+-++      ...+         .|+.+..+.   ......|.+.
T Consensus         8 ~~~~kPg~sl~LsC~~-SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~---s~~tv~L~~~   83 (130)
T d1rhhb1           8 AEVKKPGSSVQVSCKA-SGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQ---ATSTAYMELT   83 (130)
T ss_dssp             CEEECTTCCEEEEEEE-TTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEET---TTTEEEEEEC
T ss_pred             CceECCCCCeEEEEEE-eCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccC---CccEEEEEee
Confidence            4467899999999998 6643  23678887  233221      1111         122222111   1222357788


Q ss_pred             cccccccceeEEEEee
Q psy15128        268 VLGALSDDQWKLIAKN  283 (292)
Q Consensus       268 ~~~~~~~g~y~C~a~n  283 (292)
                      .++.+|.+.|.|....
T Consensus        84 ~L~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          84 NLRSDDTAVYYCARDF   99 (130)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             ccCCCCcEEEEEEeec
Confidence            9999999999997654

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.32  E-value=0.00037  Score=43.66  Aligned_cols=75  Identities=11%  Similarity=0.127  Sum_probs=43.8

Q ss_pred             eEEeCCCceEEEeeCCCCCC--CCeEEEeE--cCeEe------ccCCC-ceEEecCCCcccc-----ccccccccccccc
Q psy15128        208 TRVASGETALLECGPPKGQP--EPTLHWKK--NGQFI------DLESS-KRVSILGDPWFDS-----RRSRSIFGSVLGA  271 (292)
Q Consensus       208 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~--~g~~~------~~~~~-~~~~~~~~~~~~~-----~~~~~l~i~~~~~  271 (292)
                      ..+++|+++.|+|.+ .|..  .-.+.|.+  .|+-+      ....+ ..+...-.+.+..     .....|.+..++.
T Consensus        10 ~lvkPG~Sl~LsC~~-SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~   88 (135)
T d1ieha_          10 GLVQPGGSLRVSCAA-SGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKS   88 (135)
T ss_dssp             CEECTTCEEEEEEEE-ESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCS
T ss_pred             ceECCCCCeEEEEEE-cCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCc
Confidence            467899999999998 5543  23588887  23222      11111 1111111111111     2233577889999


Q ss_pred             cccceeEEEEee
Q psy15128        272 LSDDQWKLIAKN  283 (292)
Q Consensus       272 ~~~g~y~C~a~n  283 (292)
                      +|.+.|+|....
T Consensus        89 eDTAvYYCAr~~  100 (135)
T d1ieha_          89 EDTAVYYCAKYS  100 (135)
T ss_dssp             SSCEEEEEEEBS
T ss_pred             ccceeeEEEEec
Confidence            999999997643

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.31  E-value=3.9e-05  Score=46.80  Aligned_cols=72  Identities=11%  Similarity=0.100  Sum_probs=42.6

Q ss_pred             CCCceEEEeeCCCCCCC-CeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128        212 SGETALLECGPPKGQPE-PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ  288 (292)
Q Consensus       212 ~g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~  288 (292)
                      .++.++|.|.+.+.+|. ..|.|.++|..........  ...++.+..  ...|.+..-.. +.|.|+|.+....+..
T Consensus        19 ~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~--~~~~g~~s~--~S~L~v~~~~w-~~~~ytC~V~H~~~~~   91 (101)
T d1kcvh2          19 AASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSA--VLQSGLYTL--SSNTTVASGTW-PSASVTCLVAHPKSST   91 (101)
T ss_dssp             TCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCC--EEETTEEEE--EEEEEEETTTT-TTSCCEEEEEEGGGTE
T ss_pred             CCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeee--ecCCCCEEE--EEEEEEchhhc-CCCeEEEEEEeCCCCe
Confidence            46789999999444554 4899998886532111111  122333332  23455543333 3678999999877654

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.30  E-value=0.00049  Score=43.21  Aligned_cols=78  Identities=12%  Similarity=0.106  Sum_probs=44.9

Q ss_pred             ceEEeCCCceEEEeeCCCCCCCC--eEEEeE--cCeEec------cCCCc-eEEecCCCcccc-----cccccccccccc
Q psy15128        207 DTRVASGETALLECGPPKGQPEP--TLHWKK--NGQFID------LESSK-RVSILGDPWFDS-----RRSRSIFGSVLG  270 (292)
Q Consensus       207 ~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~--~g~~~~------~~~~~-~~~~~~~~~~~~-----~~~~~l~i~~~~  270 (292)
                      ...+++|+++.|+|.+ .|...-  .+.|.+  .|+-++      ...+. .+...-.+.+..     +....|.+..++
T Consensus         8 ~~~vkPg~sl~LsC~~-SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~   86 (133)
T d1rzfh1           8 AEVNKPGSSVKVSCQA-SGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLR   86 (133)
T ss_dssp             CEEECTTCCEEEEEEE-SSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEE-cCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCC
Confidence            3468899999999998 664433  577877  232221      11111 111111111111     223457788999


Q ss_pred             ccccceeEEEEeecc
Q psy15128        271 ALSDDQWKLIAKNIR  285 (292)
Q Consensus       271 ~~~~g~y~C~a~n~~  285 (292)
                      .+|.+.|.|......
T Consensus        87 ~eDtA~YYCAr~~~~  101 (133)
T d1rzfh1          87 SDDTAVYYCASNSIA  101 (133)
T ss_dssp             GGGCEEEEEEEEECC
T ss_pred             CCCCEEEEeeeccCC
Confidence            999999999765433