Psyllid ID: psy15163

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MFLFIGHPNGAPTSATVRVTNLDDLVDDLSRASVNGGRQNINGSVNGLTHGSGNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccEEEEccEEccHHHHHHHcccccccccccccccccEEEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEccccccccccccHHHHHHHHHHHHHHHHccccccEcccccccccccccccccccccccccccccccccHHHccccccccccEEEEcccccccccccccEEEEEcHHHcccEEEEEEcccccccHcHHHHHccccHHHccccEcccccEEEcccccccccEEEHHccccccc
Coil and Loop (DISEMBL)
mflfighpngaptsatvRVTNLDDLVDDLsrasvnggrqningsvnglthgsgngvthgpcgnkltqprsgktckqcgqevrsgdlavyteklgdqvlwhpqcfvcstCDELLVDLMYFhykgnvyclrdyatmldiprchacdelifvneytlaenktfhvkhfccyecdkiitq
Flexible Loop (DISEMBL)
mflfighpngaptsatVRVTNLDDLVDDLSRASVNGGRQNINGSVNGLTHGSGNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ
Low Complexity Region (SEG)
MFLFIGHPNGAPTSATVRVTNLDDLVDDLSRASVNGGRQNINGSVNGLTHGSGNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ
Disordered region (IsUnstruct)
****************VRVTNLDDLV**************************************************CGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKII**
Disordered Region (DISOPRED)
*************************************************************************CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT*
Disordered Region (DISEMBL)
MFLFIGHPNGAPTSATVRVTNLDDLVDDLSRASVNGGRQNINGSVNGLTHGSGNGVTHGPCGNKLT*************EVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ
Disordered Region (DISPRO)
MFLFIGHPNGAPTSATVRVTNLDDLVDDLSRASVNGGRQNINGSVNG*****************LTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKII**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFLFIGHPNGAPTSATVRVTNLDDLVDDLSRASVNGGRQNINGSVNGLTHGSGNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
Q7Z3G6	844	Prickle-like protein 2 OS	yes	N/A	0.590	0.123	0.514	4e-31
Q80Y24	845	Prickle-like protein 2 OS	yes	N/A	0.590	0.123	0.495	5e-31
Q90Z06	835	Prickle-like protein 1-A	N/A	N/A	0.573	0.120	0.509	2e-30
Q90WV2	832	Prickle-like protein 1-B	N/A	N/A	0.568	0.120	0.504	5e-30
A0M8U6	421	Testin OS=Canis familiari	no	N/A	0.755	0.315	0.431	8e-30
Q07E27	421	Testin OS=Mustela putoriu	N/A	N/A	0.579	0.242	0.563	9e-30
Q2LAP6	419	Testin OS=Rattus norvegic	no	N/A	0.892	0.374	0.4	1e-29
Q2QLB2	421	Testin OS=Equus caballus	no	N/A	0.772	0.323	0.437	2e-29
Q96MT3	831	Prickle-like protein 1 OS	no	N/A	0.568	0.120	0.514	2e-29
Q07E51	421	Testin OS=Dasypus novemci	N/A	N/A	0.755	0.315	0.431	2e-29

>sp|Q7Z3G6|PRIC2_HUMAN Prickle-like protein 2 OS=Homo sapiens GN=PRICKLE2 PE=1 SV=2

 Score =  134 bits (336), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 76/105 (72%), Gaps = 1/105 (0%)

Query: 70  SGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLR 129
           +G  C+QCG ++  GD+AV+  + G  V WHP CFVC+ C+ELLVDL+YF+  G +YC R
Sbjct: 126 TGAICEQCGGQINGGDIAVFASRAGHGVCWHPPCFVCTVCNELLVDLIYFYQDGKIYCGR 185

Query: 130 DYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKII 174
            +A  L  PRC ACDE+IF +E T AE + +H+KHFCC+EC+ ++
Sbjct: 186 HHAECLK-PRCAACDEIIFADECTEAEGRHWHMKHFCCFECETVL 229

Homo sapiens (taxid: 9606)

>sp|Q80Y24|PRIC2_MOUSE Prickle-like protein 2 OS=Mus musculus GN=Prickle2 PE=1 SV=3

 Score =  133 bits (335), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 52/105 (49%), Positives = 77/105 (73%), Gaps = 1/105 (0%)

Query: 70  SGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLR 129
           +G  C+QCG +++ GD+AV+  + G  + WHP CFVC+ C+ELLVDL+YF+  G +YC R
Sbjct: 126 TGAICEQCGGQIKGGDIAVFASRAGHGICWHPPCFVCTVCNELLVDLIYFYQDGKIYCGR 185

Query: 130 DYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKII 174
            +A  L  PRC ACDE+IF +E T AE + +H++HFCC+EC+ ++
Sbjct: 186 HHAECLK-PRCAACDEIIFADECTEAEGRHWHMRHFCCFECETVL 229

Mus musculus (taxid: 10090)

>sp|Q90Z06|PRI1A_XENLA Prickle-like protein 1-A OS=Xenopus laevis GN=prickle1-a PE=1 SV=1

 Score =  132 bits (331), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/102 (50%), Positives = 77/102 (75%), Gaps = 1/102 (0%)

Query: 73  TCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 132
           TC++CG+++  G++A++  + G  V WHP CFVCSTC+ELLVDL+YF+  G ++C R +A
Sbjct: 125 TCEKCGEKINGGEVAIFVSRAGPGVCWHPSCFVCSTCNELLVDLIYFYQDGKIHCGRHHA 184

Query: 133 TMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKII 174
            +L  PRC ACDE+IF +E T AE + +H+ HFCCYEC+ ++
Sbjct: 185 ELLK-PRCSACDEIIFADECTEAEGRHWHMNHFCCYECETVL 225

Acts in a planar cell polarity (PCP) complex; polarization along the apical/basal axis of epithelial cells. Regulates the polarized assembly of fibronectrin on the surface of the mesoderm during gastrulation. Essential for gastrulation cell movements, cooperating with dvl2/dsh to activate jnk. Acts together with tes to control axial elongation.

Xenopus laevis (taxid: 8355)

>sp|Q90WV2|PRI1B_XENLA Prickle-like protein 1-B OS=Xenopus laevis GN=prickle1-b PE=2 SV=2

 Score =  130 bits (326), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 51/101 (50%), Positives = 76/101 (75%), Gaps = 1/101 (0%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYAT 133
           C++CG+++  G++A++  + G  V WHP CFVCSTC+ELLVDL+YF+  G ++C R +A 
Sbjct: 126 CEKCGEKINGGEIAIFVSRAGPGVCWHPSCFVCSTCNELLVDLIYFYQDGKIHCGRHHAE 185

Query: 134 MLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKII 174
           +L  PRC ACDE+IF +E T AE + +H+ HFCCYEC+ ++
Sbjct: 186 LLK-PRCSACDEIIFADECTEAEGRHWHMNHFCCYECETVL 225

Acts in a planar cell polarity (PCP) complex; polarization along the apical/basal axis of epithelial cells. Regulates the polarized assembly of fibronectrin on the surface of the mesoderm during gastrulation. Essential for gastrulation cell movements, cooperating with dvl2/dsh to activate jnk. Acts together with tes to control axial elongation.

Xenopus laevis (taxid: 8355)

>sp|A0M8U6|TES_CANFA Testin OS=Canis familiaris GN=TES PE=3 SV=1

 Score =  129 bits (325), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 85/146 (58%), Gaps = 13/146 (8%)

Query: 30  SRASVNGGRQNINGSVNGLTHGSGNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVY 89
           +R  + GG ++   +V  +   S                R+  +C  C Q ++ GD A+Y
Sbjct: 204 NRMYIPGGDRSTAAAVGAMEDKSAE------------HKRTQYSCYCCKQSMKEGDPAIY 251

Query: 90  TEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFV 149
            E+ G   LWHP CFVCSTC ELLVD++YF   G +YC R Y    + PRC  CDELIF 
Sbjct: 252 AERAGYDKLWHPACFVCSTCHELLVDMIYFWKNGKLYCGRHYCDS-EKPRCAGCDELIFS 310

Query: 150 NEYTLAENKTFHVKHFCCYECDKIIT 175
           NEYT AEN+ +H+KHFCC++CD I+ 
Sbjct: 311 NEYTQAENQNWHLKHFCCFDCDNILA 336

Scaffold protein that may play a role in cell adhesion, cell spreading and in the reorganization of the actin cytoskeleton. Plays a role in the regulation of cell proliferation. May act as a tumor suppressor.

Canis familiaris (taxid: 9615)

>sp|Q07E27|TES_MUSPF Testin OS=Mustela putorius furo GN=TES PE=3 SV=1

 Score =  129 bits (324), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 73/103 (70%), Gaps = 1/103 (0%)

Query: 73  TCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 132
           +C  C Q ++ GD A+Y E+ G   LWHP CFVCSTC ELLVD++YF  KG +YC R Y 
Sbjct: 235 SCYCCKQSMKEGDPAIYAERAGYDKLWHPACFVCSTCHELLVDMIYFWKKGKLYCGRHYC 294

Query: 133 TMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
              + PRC  CDELIF NEYT AEN+ +H+KHFCC++CD I+ 
Sbjct: 295 DS-EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDNILA 336

Scaffold protein that may play a role in cell adhesion, cell spreading and in the reorganization of the actin cytoskeleton. Plays a role in the regulation of cell proliferation. May act as a tumor suppressor.

Mustela putorius furo (taxid: 9669)

>sp|Q2LAP6|TES_RAT Testin OS=Rattus norvegicus GN=Tes PE=1 SV=1

 Score =  129 bits (323), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 92/165 (55%), Gaps = 8/165 (4%)

Query: 18  RVTNLDDLVDDLSRASVNGGRQNINGSVNG----LTHGSGNGVTHGPCGNKLTQPRSGKT 73
            V  ++  V      ++  G   +   +N     + + +G+  T    G+K     + KT
Sbjct: 171 EVKEMEQFVKKYKSEALGVGDVKLPSEMNAQGDKVHNPAGDRNTPAAVGSKDKSAEAKKT 230

Query: 74  ---CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRD 130
              C  C   +R GD A+Y E+ G   LWHP CF+CSTC ELLVD++YF   G +YC R 
Sbjct: 231 QYSCYCCKNTMREGDPAIYAERAGYDKLWHPACFICSTCGELLVDMIYFWKNGKLYCGRH 290

Query: 131 YATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
           Y    + PRC  CDELIF NEYT AEN+ +H+KHFCC++CD I+ 
Sbjct: 291 YCDS-EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDNILA 334

Scaffold protein that may play a role in cell adhesion, cell spreading and in the reorganization of the actin cytoskeleton. Plays a role in the regulation of cell proliferation. May act as a tumor suppressor.

Rattus norvegicus (taxid: 10116)

>sp|Q2QLB2|TES_HORSE Testin OS=Equus caballus GN=TES PE=3 SV=1

 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/151 (43%), Positives = 88/151 (58%), Gaps = 15/151 (9%)

Query: 26  VDDLSRASVNGGRQNINGSVNGLTHGSGNGVTHGPCGNKLTQ-PRSGKTCKQCGQEVRSG 84
             D +R  + GG ++   +V             G   NKL +  R+  +C  C   ++ G
Sbjct: 200 AQDPNRMCIPGGDRSTTAAV-------------GAKENKLAENKRTQYSCYCCNLSMKEG 246

Query: 85  DLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACD 144
           D A+Y E+ G   LWHP CFVCSTC ELLVD++YF   G +YC R Y    + PRC  CD
Sbjct: 247 DPAIYAERAGYDKLWHPACFVCSTCHELLVDMIYFWKNGKLYCGRHYCDS-EKPRCAGCD 305

Query: 145 ELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
           ELIF NEYT AEN+ +H+KHFCC++CD I+ 
Sbjct: 306 ELIFSNEYTQAENQNWHLKHFCCFDCDSILA 336

Scaffold protein that may play a role in cell adhesion, cell spreading and in the reorganization of the actin cytoskeleton. Plays a role in the regulation of cell proliferation. May act as a tumor suppressor.

Equus caballus (taxid: 9796)

>sp|Q96MT3|PRIC1_HUMAN Prickle-like protein 1 OS=Homo sapiens GN=PRICKLE1 PE=1 SV=2

 Score =  128 bits (321), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/101 (51%), Positives = 74/101 (73%), Gaps = 1/101 (0%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYAT 133
           C+QCG ++  G++AV+  + G  V WHP CFVC TC+ELLVDL+YF+  G ++C R +A 
Sbjct: 126 CEQCGLKINGGEVAVFASRAGPGVCWHPSCFVCFTCNELLVDLIYFYQDGKIHCGRHHAE 185

Query: 134 MLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKII 174
           +L  PRC ACDE+IF +E T AE + +H+KHFCC EC+ ++
Sbjct: 186 LLK-PRCSACDEIIFADECTEAEGRHWHMKHFCCLECETVL 225

Involved in the planar cell polarity pathway that controls convergent extension during gastrulation and neural tube closure. Convergent extension is a complex morphogenetic process during which cells elongate, move mediolaterally, and intercalate between neighboring cells, leading to convergence toward the mediolateral axis and extension along the anteroposterior axis. Necessary for nuclear localization of REST. May serve as nuclear receptor.

Homo sapiens (taxid: 9606)

>sp|Q07E51|TES_DASNO Testin OS=Dasypus novemcinctus GN=TES PE=3 SV=1

 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 85/146 (58%), Gaps = 13/146 (8%)

Query: 30  SRASVNGGRQNINGSVNGLTHGSGNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVY 89
           +R  + GG ++   +V  +   SG               R+  +C  C   ++ GD AVY
Sbjct: 204 NRICIPGGDRSTTAAVGAMEAKSGE------------HRRTQYSCYGCKLSMKEGDPAVY 251

Query: 90  TEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFV 149
            E+ G   LWHP CF+CSTC ELLVD++YF   G +YC R Y    + PRC  CDELIF 
Sbjct: 252 AERAGYNKLWHPACFICSTCCELLVDMIYFWKNGKLYCGRHYCDS-EKPRCAGCDELIFS 310

Query: 150 NEYTLAENKTFHVKHFCCYECDKIIT 175
           NEYT AEN+ +H+KHFCC++CD I+ 
Sbjct: 311 NEYTQAENQNWHLKHFCCFDCDNILA 336

Scaffold protein that may play a role in cell adhesion, cell spreading and in the reorganization of the actin cytoskeleton. Plays a role in the regulation of cell proliferation. May act as a tumor suppressor.

Dasypus novemcinctus (taxid: 9361)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
328724369	559	PREDICTED: testin-like [Acyrthosiphon pi	0.579	0.182	0.627	8e-35
383852121	799	PREDICTED: uncharacterized protein LOC10	0.562	0.123	0.63	9e-34
380026603	740	PREDICTED: testin-like [Apis florea]	0.613	0.145	0.577	1e-32
328789425	742	PREDICTED: testin-like [Apis mellifera]	0.613	0.145	0.568	2e-32
194755335	817	GF11783 [Drosophila ananassae] gi|190621	0.602	0.129	0.556	2e-32
195455875	807	GK23303 [Drosophila willistoni] gi|19417	0.636	0.138	0.526	5e-32
195488727	816	GE14189 [Drosophila yakuba] gi|194178537	0.630	0.136	0.530	1e-31
159884211	848	RE57334p [Drosophila melanogaster]	0.630	0.130	0.522	1e-31
170043587	817	testin [Culex quinquefasciatus] gi|16786	0.590	0.127	0.570	1e-31
372810480	851	FI18181p1 [Drosophila melanogaster]	0.630	0.130	0.522	2e-31

>gi|328724369|ref|XP_001949083.2| PREDICTED: testin-like [Acyrthosiphon pisum]

 Score =  151 bits (382), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 64/102 (62%), Positives = 81/102 (79%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYAT 133
           CKQC + V  G +AV  E+ G +V WHP CFVC+TC+ELLVDL+YF+Y  NVYC R YA 
Sbjct: 367 CKQCNKNVIPGQVAVMAERTGKEVFWHPPCFVCATCEELLVDLVYFYYSENVYCGRHYAE 426

Query: 134 MLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
           +L+IPRC+ACDELIF+ EYT+AE  T+HV+HFCC+ECDK + 
Sbjct: 427 ILNIPRCNACDELIFLKEYTIAEEHTYHVRHFCCFECDKPLA 468

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852121|ref|XP_003701577.1| PREDICTED: uncharacterized protein LOC100875736 [Megachile rotundata]

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 63/100 (63%), Positives = 78/100 (78%), Gaps = 1/100 (1%)

Query: 72  KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 131
           + C +C +E+  GD+AV TEK    V+WHP CFVCSTC+ELLVDL+YF+YK  +YC RD 
Sbjct: 608 QKCHKCEEEIHIGDVAVTTEK-AKNVVWHPGCFVCSTCNELLVDLVYFYYKNKLYCGRDL 666

Query: 132 ATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECD 171
           A +L IPRC ACDELIFV EYT+AE   +HVKHFCC++CD
Sbjct: 667 AALLGIPRCFACDELIFVREYTVAEGHNYHVKHFCCWDCD 706

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026603|ref|XP_003697037.1| PREDICTED: testin-like [Apis florea]

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 63/109 (57%), Positives = 82/109 (75%), Gaps = 1/109 (0%)

Query: 63  NKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYK 122
           ++LT     + C +C +E+  GD+A+ TEK  + V WHP CFVC+ C+ELLVDL+YF+YK
Sbjct: 539 DQLTINSKLQKCHKCKEEIHVGDVAIITEKAKNTV-WHPGCFVCNMCNELLVDLVYFYYK 597

Query: 123 GNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECD 171
             +YC RD AT+L IPRC ACDELIFV EYT+AE   +HVKHFCC++CD
Sbjct: 598 NKLYCGRDLATLLGIPRCFACDELIFVREYTVAEGHNYHVKHFCCWDCD 646

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328789425|ref|XP_003251271.1| PREDICTED: testin-like [Apis mellifera]

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/109 (56%), Positives = 80/109 (73%), Gaps = 1/109 (0%)

Query: 63  NKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYK 122
           ++LT     + C +C +E+  GD+AV TEK     +WHP CFVC+ C+ELLVDL+YF+YK
Sbjct: 540 DQLTINSKLQKCHKCKEEIHVGDVAVITEK-AKNAIWHPGCFVCNMCNELLVDLVYFYYK 598

Query: 123 GNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECD 171
             +YC RD A +L IPRC ACDELIFV EYT+AE   +HVKHFCC++CD
Sbjct: 599 NKLYCGRDLAILLGIPRCFACDELIFVREYTVAEGHNYHVKHFCCWDCD 647

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194755335|ref|XP_001959947.1| GF11783 [Drosophila ananassae] gi|190621245|gb|EDV36769.1| GF11783 [Drosophila ananassae]

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/106 (55%), Positives = 73/106 (68%)

Query: 67  QPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVY 126
           +P S   C  C Q +  G++AV  ++ G ++ WHP CF C TC ELL DL+YF ++G VY
Sbjct: 621 EPVSSILCCDCSQPIAFGEVAVKADRAGKEIAWHPNCFKCHTCRELLADLVYFFHQGQVY 680

Query: 127 CLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDK 172
           C RD A  L IPRC ACDELIF  EYT AE  TFH+KHFCCY+CD+
Sbjct: 681 CGRDLAIKLKIPRCRACDELIFTKEYTAAEGATFHIKHFCCYQCDE 726

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195455875|ref|XP_002074904.1| GK23303 [Drosophila willistoni] gi|194170989|gb|EDW85890.1| GK23303 [Drosophila willistoni]

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 59/112 (52%), Positives = 72/112 (64%)

Query: 60  PCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYF 119
           P    +  P +  +C+ C   +  G++AV  E+ G ++ WHP CF C TC ELL DL+YF
Sbjct: 604 PNSTSMPPPPAPVSCRDCSLPIHFGEVAVKAERAGKEIAWHPACFKCHTCRELLADLVYF 663

Query: 120 HYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECD 171
            + G VYC RD A  L IPRC ACDELIF  EYT AE  TFH+KHFCCY CD
Sbjct: 664 FHHGQVYCGRDLAIKLKIPRCKACDELIFTKEYTAAEGSTFHIKHFCCYHCD 715

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195488727|ref|XP_002092436.1| GE14189 [Drosophila yakuba] gi|194178537|gb|EDW92148.1| GE14189 [Drosophila yakuba]

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/113 (53%), Positives = 77/113 (68%), Gaps = 2/113 (1%)

Query: 62  GNKLTQPRSGKT--CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYF 119
           G++ T   S +T  C  C Q +  G++AV  ++ G ++ WHP CF C TC ELL DL+YF
Sbjct: 613 GDEATGKDSQRTILCADCSQPIAMGEVAVKADRAGKEIAWHPGCFKCITCRELLADLVYF 672

Query: 120 HYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDK 172
            ++G V+C RD A  L IPRC ACDELIF  EYT AE  TFH+KHFCCY+CD+
Sbjct: 673 FHQGQVFCGRDLAIRLKIPRCRACDELIFTKEYTAAEEATFHIKHFCCYQCDE 725

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|159884211|gb|ABX00784.1| RE57334p [Drosophila melanogaster]

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/113 (52%), Positives = 77/113 (68%), Gaps = 2/113 (1%)

Query: 62  GNKLTQPRSGKT--CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYF 119
           G++ +   S +T  C  C Q +  G++AV  ++ G ++ WHP CF C TC ELL DL+YF
Sbjct: 648 GDEASGKNSTRTILCADCNQPIAMGEVAVKADRAGKEIAWHPGCFKCITCRELLADLVYF 707

Query: 120 HYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDK 172
            ++G V+C RD A  L IPRC ACDELIF  EYT AE  TFH+KHFCCY+CD+
Sbjct: 708 FHQGQVFCGRDLAIRLKIPRCRACDELIFTKEYTAAEEATFHIKHFCCYQCDE 760

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170043587|ref|XP_001849464.1| testin [Culex quinquefasciatus] gi|167866870|gb|EDS30253.1| testin [Culex quinquefasciatus]

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/107 (57%), Positives = 68/107 (63%), Gaps = 3/107 (2%)

Query: 68  PRSGKTCKQCGQEVRSGDLAV---YTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGN 124
           P     C  C Q +  G++AV     EK G    WHPQCF C  C ELL DL+YF++ G 
Sbjct: 619 PPEPVVCSGCQQSINVGEVAVKAERAEKSGKSAAWHPQCFKCEDCKELLADLVYFYHGGK 678

Query: 125 VYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECD 171
           VYC RD A ML IPRC ACDELIF  EYT AE  TFH+KHFCCY CD
Sbjct: 679 VYCARDLANMLKIPRCSACDELIFTKEYTAAEGSTFHIKHFCCYHCD 725

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|372810480|gb|AEX98032.1| FI18181p1 [Drosophila melanogaster]

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/113 (52%), Positives = 77/113 (68%), Gaps = 2/113 (1%)

Query: 62  GNKLTQPRSGKT--CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYF 119
           G++ +   S +T  C  C Q +  G++AV  ++ G ++ WHP CF C TC ELL DL+YF
Sbjct: 648 GDEASGKNSTRTILCADCNQPIAMGEVAVKADRAGKEIAWHPGCFKCITCRELLADLVYF 707

Query: 120 HYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDK 172
            ++G V+C RD A  L IPRC ACDELIF  EYT AE  TFH+KHFCCY+CD+
Sbjct: 708 FHQGQVFCGRDLAIRLKIPRCRACDELIFTKEYTAAEEATFHIKHFCCYQCDE 760

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
UNIPROTKB|Q07E27	421	TES "Testin" [Mustela putorius	0.573	0.239	0.568	3.3e-31
UNIPROTKB|Q2QLB2	421	TES "Testin" [Equus caballus (	0.630	0.263	0.530	4.2e-31
FB|FBgn0034223	816	Tes "Testin ortholog" [Drosoph	0.630	0.136	0.522	4.8e-31
UNIPROTKB|A0M8U6	421	TES "Testin" [Canis lupus fami	0.596	0.249	0.547	6.9e-31
UNIPROTKB|E2RDJ9	412	TES "Testin" [Canis lupus fami	0.596	0.254	0.547	6.9e-31
UNIPROTKB|F1PFX9	421	TES "Testin" [Canis lupus fami	0.596	0.249	0.547	6.9e-31
RGD|1566346	419	Tes "testis derived transcript	0.755	0.317	0.459	6.9e-31
UNIPROTKB|Q2IBC3	421	TES "Testin" [Rhinolophus ferr	0.636	0.266	0.513	1.1e-30
UNIPROTKB|Q6DIR5	422	tes "Testin" [Xenopus (Siluran	0.772	0.322	0.461	2.3e-30
UNIPROTKB|Q07E40	421	TES "Testin" [Neofelis nebulos	0.653	0.273	0.504	3e-30

UNIPROTKB|Q07E27 TES "Testin" [Mustela putorius furo (taxid:9669)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 58/102 (56%), Positives = 73/102 (71%)

Query:    73 TCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 132
             +C  C Q ++ GD A+Y E+ G   LWHP CFVCSTC ELLVD++YF  KG +YC R Y 
Sbjct:   235 SCYCCKQSMKEGDPAIYAERAGYDKLWHPACFVCSTCHELLVDMIYFWKKGKLYCGRHYC 294

Query:   133 TMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKII 174
                + PRC  CDELIF NEYT AEN+ +H+KHFCC++CD I+
Sbjct:   295 DS-EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDNIL 335

GO:0005737 "cytoplasm" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

UNIPROTKB|Q2QLB2 TES "Testin" [Equus caballus (taxid:9796)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 60/113 (53%), Positives = 77/113 (68%)

Query:    63 NKLTQ-PRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHY 121
             NKL +  R+  +C  C   ++ GD A+Y E+ G   LWHP CFVCSTC ELLVD++YF  
Sbjct:   224 NKLAENKRTQYSCYCCNLSMKEGDPAIYAERAGYDKLWHPACFVCSTCHELLVDMIYFWK 283

Query:   122 KGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKII 174
              G +YC R Y    + PRC  CDELIF NEYT AEN+ +H+KHFCC++CD I+
Sbjct:   284 NGKLYCGRHYCDS-EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSIL 335

GO:0005737 "cytoplasm" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

FB|FBgn0034223 Tes "Testin ortholog" [Drosophila melanogaster (taxid:7227)]

 Score = 351 (128.6 bits), Expect = 4.8e-31, P = 4.8e-31
 Identities = 59/113 (52%), Positives = 77/113 (68%)

Query:    62 GNKLTQPRSGKT--CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYF 119
             G++ +   S +T  C  C Q +  G++AV  ++ G ++ WHP CF C TC ELL DL+YF
Sbjct:   613 GDEASGKNSTRTILCADCNQPIAMGEVAVKADRAGKEIAWHPGCFKCITCRELLADLVYF 672

Query:   120 HYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDK 172
              ++G V+C RD A  L IPRC ACDELIF  EYT AE  TFH+KHFCCY+CD+
Sbjct:   673 FHQGQVFCGRDLAIRLKIPRCRACDELIFTKEYTAAEEATFHIKHFCCYQCDE 725

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|A0M8U6 TES "Testin" [Canis lupus familiaris (taxid:9615)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 58/106 (54%), Positives = 74/106 (69%)

Query:    69 RSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCL 128
             R+  +C  C Q ++ GD A+Y E+ G   LWHP CFVCSTC ELLVD++YF   G +YC 
Sbjct:   231 RTQYSCYCCKQSMKEGDPAIYAERAGYDKLWHPACFVCSTCHELLVDMIYFWKNGKLYCG 290

Query:   129 RDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKII 174
             R Y    + PRC  CDELIF NEYT AEN+ +H+KHFCC++CD I+
Sbjct:   291 RHYCDS-EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDNIL 335

GO:0005737 "cytoplasm" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0005925 "focal adhesion" evidence=IEA

UNIPROTKB|E2RDJ9 TES "Testin" [Canis lupus familiaris (taxid:9615)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 58/106 (54%), Positives = 74/106 (69%)

Query:    69 RSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCL 128
             R+  +C  C Q ++ GD A+Y E+ G   LWHP CFVCSTC ELLVD++YF   G +YC 
Sbjct:   222 RTQYSCYCCKQSMKEGDPAIYAERAGYDKLWHPACFVCSTCHELLVDMIYFWKNGKLYCG 281

Query:   129 RDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKII 174
             R Y    + PRC  CDELIF NEYT AEN+ +H+KHFCC++CD I+
Sbjct:   282 RHYCDS-EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDNIL 326

GO:0043234 "protein complex" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1PFX9 TES "Testin" [Canis lupus familiaris (taxid:9615)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 58/106 (54%), Positives = 74/106 (69%)

Query:    69 RSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCL 128
             R+  +C  C Q ++ GD A+Y E+ G   LWHP CFVCSTC ELLVD++YF   G +YC 
Sbjct:   231 RTQYSCYCCKQSMKEGDPAIYAERAGYDKLWHPACFVCSTCHELLVDMIYFWKNGKLYCG 290

Query:   129 RDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKII 174
             R Y    + PRC  CDELIF NEYT AEN+ +H+KHFCC++CD I+
Sbjct:   291 RHYCDS-EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDNIL 335

GO:0043234 "protein complex" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1566346 Tes "testis derived transcript" [Rattus norvegicus (taxid:10116)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 63/137 (45%), Positives = 85/137 (62%)

Query:    41 INGSVNGLTHGSGNGVTHGPCGNKLTQPRSGKT---CKQCGQEVRSGDLAVYTEKLGDQV 97
             +N   + + + +G+  T    G+K     + KT   C  C   +R GD A+Y E+ G   
Sbjct:   198 MNAQGDKVHNPAGDRNTPAAVGSKDKSAEAKKTQYSCYCCKNTMREGDPAIYAERAGYDK 257

Query:    98 LWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAEN 157
             LWHP CF+CSTC ELLVD++YF   G +YC R Y    + PRC  CDELIF NEYT AEN
Sbjct:   258 LWHPACFICSTCGELLVDMIYFWKNGKLYCGRHYCDS-EKPRCAGCDELIFSNEYTQAEN 316

Query:   158 KTFHVKHFCCYECDKII 174
             + +H+KHFCC++CD I+
Sbjct:   317 QNWHLKHFCCFDCDNIL 333

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005886 "plasma membrane" evidence=ISO

GO:0005925 "focal adhesion" evidence=IEA

GO:0008270 "zinc ion binding" evidence=ISO;ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISO;ISS

GO:0030054 "cell junction" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

UNIPROTKB|Q2IBC3 TES "Testin" [Rhinolophus ferrumequinum (taxid:59479)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 58/113 (51%), Positives = 75/113 (66%)

Query:    62 GNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHY 121
             G      R+  +C  C   ++ GD A+Y E+ G   LWHP CFVCSTC+ELLVD++YF  
Sbjct:   224 GKSAEHRRTQYSCYCCKLSMKEGDPAIYAERAGYDKLWHPACFVCSTCEELLVDMIYFWK 283

Query:   122 KGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKII 174
              G +YC R Y    + PRC  CDELIF NEYT AEN+ +H+KHFCC++CD I+
Sbjct:   284 NGKLYCGRHYCDS-EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDNIL 335

GO:0005737 "cytoplasm" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

UNIPROTKB|Q6DIR5 tes "Testin" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 66/143 (46%), Positives = 85/143 (59%)

Query:    32 ASVNGGRQNINGSVNGLTHGSGNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTE 91
             A   G  ++ NGS++ LT   G   T         Q  S   C +C + +R GD AVY E
Sbjct:   200 AQACGAGRSTNGSLSTLTTVKG---TEDKVA---AQKESTYYCFRCKENMREGDPAVYAE 253

Query:    92 KLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNE 151
             + G   LWHP CFVC TC+ELLVD++YF   G +YC R Y    + PRC  CDELIF NE
Sbjct:   254 RAGYDKLWHPSCFVCFTCNELLVDMIYFWKNGKLYCGRHYCDS-EKPRCAGCDELIFSNE 312

Query:   152 YTLAENKTFHVKHFCCYECDKII 174
             YT AE   +H+KHFCC++CD ++
Sbjct:   313 YTQAEGLNWHLKHFCCFDCDCVL 335

GO:0001755 "neural crest cell migration" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISS

GO:0005938 "cell cortex" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

UNIPROTKB|Q07E40 TES "Testin" [Neofelis nebulosa (taxid:61452)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 59/117 (50%), Positives = 76/117 (64%)

Query:    59 GPCGNKLTQP-RSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLM 117
             G    K  +P R+  +C  C   ++ GD A+Y E+ G   LWHP CFVCS C ELLVD++
Sbjct:   220 GAMEGKSAEPKRTQYSCYCCKLSMKEGDPAIYAERAGYDKLWHPACFVCSACQELLVDMI 279

Query:   118 YFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKII 174
             YF   G +YC R Y    + PRC  CDELIF NEYT AEN+ +H+KHFCC++CD I+
Sbjct:   280 YFWKNGKLYCGRHYCDS-EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDNIL 335

GO:0005737 "cytoplasm" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7Z3G6	PRIC2_HUMAN	No assigned EC number	0.5142	0.5909	0.1232	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	176
cd09340	58	cd09340, LIM1_Testin_like, The first LIM domain of	2e-25
cd09415	59	cd09415, LIM1_Prickle, The first LIM domain of Pri	8e-23
cd09413	58	cd09413, LIM1_Testin, The first LIM domain of Test	4e-20
cd09841	59	cd09841, LIM1_Prickle_3, The first LIM domain of P	5e-20
cd09484	59	cd09484, LIM1_Prickle_2, The first LIM domain of P	1e-19
cd09483	59	cd09483, LIM1_Prickle_1, The first LIM domain of P	2e-18
cd09341	56	cd09341, LIM2_Testin_like, The second LIM domain o	3e-18
cd09414	58	cd09414, LIM1_LIMPETin, The first LIM domain of pr	3e-18
cd09416	56	cd09416, LIM2_Testin, The second LIM domain of Tes	5e-14
cd09418	56	cd09418, LIM2_Prickle, The second LIM domain of Pr	5e-12
cd09417	56	cd09417, LIM2_LIMPETin_like, The second LIM domain	1e-08
cd08368	53	cd08368, LIM, LIM is a small protein-protein inter	2e-07
pfam00412	58	pfam00412, LIM, LIM domain	5e-06
smart00132	54	smart00132, LIM, Zinc-binding domain present in Li	8e-06
cd09331	59	cd09331, LIM1_PINCH, The first LIM domain of prote	8e-06
cd09329	52	cd09329, LIM3_abLIM, The third LIM domain of actin	2e-05
cd08368	53	cd08368, LIM, LIM is a small protein-protein inter	3e-05
pfam00412	58	pfam00412, LIM, LIM domain	7e-05
smart00132	54	smart00132, LIM, Zinc-binding domain present in Li	4e-04
cd09336	53	cd09336, LIM1_Paxillin_like, The first LIM domain	4e-04
cd09338	53	cd09338, LIM3_Paxillin_like, The third LIM domain	4e-04
cd09361	52	cd09361, LIM1_Enigma_like, The first LIM domain of	8e-04
cd09409	53	cd09409, LIM3_Paxillin, The third LIM domain of pa	0.001
cd09363	54	cd09363, LIM3_Enigma_like, The third LIM domain of	0.001
cd09387	55	cd09387, LIM2_LMO4, The second LIM domain of LMO4	0.002
cd09452	52	cd09452, LIM1_Enigma, The first LIM domain of Enig	0.002
cd09364	53	cd09364, LIM1_LIMK, The first LIM domain of LIMK (	0.002
cd09405	54	cd09405, LIM1_Paxillin, The first LIM domain of pa	0.002
cd09421	59	cd09421, LIM3_LIMPETin, The third LIM domain of pr	0.002
cd09463	53	cd09463, LIM1_LIMK2, The first LIM domain of LIMK2	0.004
cd09410	53	cd09410, LIM3_Leupaxin, The third LIM domain of Le	0.004
cd09406	55	cd09406, LIM1_Leupaxin, The first LIM domain of Le	0.004

>gnl|CDD|188726 cd09340, LIM1_Testin_like, The first LIM domain of Testin-like family

 Score = 92.3 bits (230), Expect = 2e-25
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 131
           C++C + +  G++AV+ E+ G+   WHP CFVC TC+ELLVDL+YF++ G +YC R Y
Sbjct: 1   CEKCKEPINPGEVAVFAERAGEDACWHPGCFVCETCNELLVDLIYFYHDGKIYCGRHY 58

The first LIM domain of Testin_like family: This family includes testin, prickle, dyxin and LIMPETin. Structurally, testin and prickle proteins contain three LIM domains at C-terminal; LIMPETin has six LIM domains; and dyxin presents only two LIM domains. However, all members of the family contain a PET protein-protein interaction domain. Testin is a cytoskeleton associated focal adhesion protein that localizes along actin stress fibers, at cell-cell-contact areas, and at focal adhesion plaques. Testin interacts with a variety of cytoskeletal proteins, including zyxin, mena, VASP, talin, and actin and it is involved in cell motility and adhesion events. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). Dyxin involves in lung and heart development by interaction with GATA6 and blocking GATA6 activated target genes. LIMPETin might be the recombinant product of genes coding testin and four and half LIM proteins and its function is not well understood. As in other LIM domains, this domain family is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 58

>gnl|CDD|188799 cd09415, LIM1_Prickle, The first LIM domain of Prickle

 Score = 85.4 bits (212), Expect = 8e-23
 Identities = 33/59 (55%), Positives = 43/59 (72%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 132
           C+QCG+++  GD+AV+  + G    WHP CFVCSTC ELLVDL+YF+  G VYC R +A
Sbjct: 1   CEQCGEQISGGDIAVFASRAGPGACWHPACFVCSTCKELLVDLIYFYQDGKVYCGRHHA 59

The first LIM domain of Prickle: Prickle contains three C-terminal LIM domains and a N-terminal PET domain. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). PCP establishment requires the conserved Frizzled/Dishevelled PCP pathway. Prickle interacts with Dishevelled, thereby modulating Frizzled/Dishevelled activity and PCP signaling. Four forms of prickles have been identified: prickle 1-4. The best characterized is prickle 1 and prickle 2 which are differentially expressed. While prickle 1 is expressed in fetal heart and hematological malignancies, prickle 2 is found in fetal brain, adult cartilage, pancreatic islet, and some types of timorous cells. Mutations in prickle 1 have been linked to progressive myoclonus epilepsy. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 59

>gnl|CDD|188797 cd09413, LIM1_Testin, The first LIM domain of Testin

 Score = 78.7 bits (194), Expect = 4e-20
 Identities = 33/58 (56%), Positives = 39/58 (67%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 131
           C  C Q ++ GD AVY E+ G   LWHP CFVCSTC ELLVD++YF   G +YC R Y
Sbjct: 1   CYCCKQPMKEGDPAVYAERAGYDKLWHPACFVCSTCGELLVDMIYFWKNGKLYCGRHY 58

The first LIM domain of Testin: Testin contains three C-terminal LIM domains and a PET protein-protein interaction domain at the N-terminal. Testin is a cytoskeleton associated focal adhesion protein that localizes along actin stress fibers, at cell-cell-contact areas, and at focal adhesion plaques. Testin interacts with a variety of cytoskeletal proteins, including zyxin, mena, VASP, talin, and actin and it is involved in cell motility and adhesion events. Knockout mice experiments reveal that tumor repressor function of Testin. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 58

>gnl|CDD|188872 cd09841, LIM1_Prickle_3, The first LIM domain of Prickle 3

 Score = 78.4 bits (193), Expect = 5e-20
 Identities = 30/59 (50%), Positives = 43/59 (72%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 132
           C+QCG+++  GD+AV+  + G    WHPQCF C++C ELLVDL+YF+  G +YC R +A
Sbjct: 1   CQQCGRQICGGDIAVFASRAGLGACWHPQCFQCASCQELLVDLIYFYQDGKIYCGRHHA 59

The first LIM domain of Prickle 3/LIM domain only 6 (LM06): Prickle contains three C-terminal LIM domains and a N-terminal PET domain. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). PCP establishment requires the conserved Frizzled/Dishevelled PCP pathway. Prickle interacts with Dishevelled, thereby modulating Frizzled/Dishevelled activity and PCP signaling. Four forms of prickles have been identified: prickle 1-4. The best characterized is prickle 1 and prickle 2 which are differentially expressed. While prickle 1 is expressed in fetal heart and hematological malignancies, prickle 2 is found in fetal brain, adult cartilage, pancreatic islet, and some types of timorous cells. Mutations in prickle 1 have been linked to progressive myoclonus epilepsy. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 59

>gnl|CDD|188868 cd09484, LIM1_Prickle_2, The first LIM domain of Prickle 2

 Score = 77.3 bits (190), Expect = 1e-19
 Identities = 33/59 (55%), Positives = 44/59 (74%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 132
           C+QCG ++  GD+AV+  + G  V WHPQCFVCS C+ELLVDL+YF+  G +YC R +A
Sbjct: 1   CEQCGGQINGGDIAVFASRAGHGVCWHPQCFVCSVCNELLVDLIYFYQDGKIYCGRHHA 59

The first LIM domain of Prickle 2: Prickle contains three C-terminal LIM domains and a N-terminal PET domain. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). PCP establishment requires the conserved Frizzled/Dishevelled PCP pathway. Prickle interacts with Dishevelled, thereby modulating Frizzled/Dishevelled activity and PCP signaling. Four forms of prickles have been identified: prickle 1-4. The best characterized is prickle 1 and prickle 2 which are differentially expressed. While prickle 1 is expressed in fetal heart and hematological malignancies, prickle 2 is found in fetal brain, adult cartilage, pancreatic islet, and some types of timorous cells. Mutations in prickle 1 have been linked to progressive myoclonus epilepsy. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 59

>gnl|CDD|188867 cd09483, LIM1_Prickle_1, The first LIM domain of Prickle 1

 Score = 74.6 bits (183), Expect = 2e-18
 Identities = 30/59 (50%), Positives = 43/59 (72%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 132
           C+QCG ++  G++AV+  + G  V WHP CFVC TC+ELLVDL+YF+  G ++C R +A
Sbjct: 1   CEQCGIKINGGEVAVFASRAGPGVCWHPSCFVCFTCNELLVDLIYFYQDGKIHCGRHHA 59

The first LIM domain of Prickle 1. Prickle contains three C-terminal LIM domains and a N-terminal PET domain Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). PCP establishment requires the conserved Frizzled/Dishevelled PCP pathway. Prickle interacts with Dishevelled, thereby modulating Frizzled/Dishevelled activity and PCP signaling. Four forms of prickles have been identified: prickle 1-4. The best characterized is prickle 1 and prickle 2 which are differentially expressed. While prickle 1 is expressed in fetal heart and hematological malignancies, prickle 2 is found in mainly expressed in fetal brain, adult cartilage, pancreatic islet, and some types of timorous cells. In addition, Prickle 1 regulates cell movements during gastrulation and neuronal migration through interaction with the noncanonical Wnt11/Wnt5 pathway in zebrafish. Mutations in prickle 1 have been linked to progressive myoclonus epilepsy. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 59

>gnl|CDD|188727 cd09341, LIM2_Testin_like, The second LIM domain of Testin-like family

 Score = 73.8 bits (182), Expect = 3e-18
 Identities = 24/38 (63%), Positives = 30/38 (78%)

Query: 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
           PRC ACDELIF  EYT AE K +H+KHFCC++CD+ + 
Sbjct: 1   PRCAACDELIFSGEYTQAEGKNWHLKHFCCFQCDEPLG 38

The second LIM domain of Testin-like family: This family includes testin, prickle, dyxin and LIMPETin. Structurally, testin and prickle proteins contain three LIM domains at C-terminal; LIMPETin has six LIM domains; and dyxin presents only two LIM domains. However, all members of the family contain a PET protein-protein interaction domain. Testin is a cytoskeleton associated focal adhesion protein that localizes along actin stress fibers, at cell-cell-contact areas, and at focal adhesion plaques. Testin interacts with a variety of cytoskeletal proteins, including zyxin, mena, VASP, talin, and actin and it is involved in cell motility and adhesion events. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). Dyxin involves in lung and heart development by interaction with GATA6 and blocking GATA6 activated target genes. LIMPETin might be the recombinant product of genes coding testin and four and half LIM proteins and its function is not well understood. As in other LIM domains, this domain family is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 56

>gnl|CDD|188798 cd09414, LIM1_LIMPETin, The first LIM domain of protein LIMPETin

 Score = 74.0 bits (182), Expect = 3e-18
 Identities = 29/58 (50%), Positives = 38/58 (65%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 131
           C  C + ++ G+LAV   K G+ +LWHP CF CSTC+ELLVDL Y  +   +YC R Y
Sbjct: 1   CGGCSEPLKYGELAVTAPKFGESLLWHPACFRCSTCEELLVDLTYCVHDDQIYCERHY 58

The first LIM domain of protein LIMPETin: LIMPETin contains 6 LIM domains at the C-terminal and an N-terminal PET domain. Four of the six LIM domains are highly homologous to the four and half LIM domain protein family and two of them show sequence similarity to the LIM domains of the Testin family. Thus, LIMPETin may be the recombinant product of genes coding testin and FHL proteins. In Schistosoma mansoni, where LIMPETin was first identified, LIMPETin is down regulated in sexually mature adult Schistosoma females compared to sexually immature adult females and adult male. Its differential expression indicates that it is a transcription regulator. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 58

>gnl|CDD|188800 cd09416, LIM2_Testin, The second LIM domain of Testin

 Score = 63.0 bits (153), Expect = 5e-14
 Identities = 25/37 (67%), Positives = 31/37 (83%)

Query: 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKII 174
           PRC  CDELIF NEYT AEN+ +H+KHFCC++CD I+
Sbjct: 1   PRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDNIL 37

The second LIM domain of Testin: Testin contains three C-terminal LIM domains and a PET protein-protein interaction domain at the N-terminal. Testin is a cytoskeleton associated focal adhesion protein that localizes along actin stress fibers, at cell-cell-contact areas, and at focal adhesion plaques. Testin interacts with a variety of cytoskeletal proteins, including zyxin, mena, VASP, talin, and actin and it is involved in cell motility and adhesion events. Knockout mice experiments reveal that tumor repressor function of testin. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 56

>gnl|CDD|188802 cd09418, LIM2_Prickle, The second LIM domain of Prickle

 Score = 57.8 bits (140), Expect = 5e-12
 Identities = 21/34 (61%), Positives = 28/34 (82%)

Query: 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECD 171
           PRC ACDE+IF +E T AE + +H+KHFCC+EC+
Sbjct: 1   PRCSACDEIIFADECTEAEGRHWHMKHFCCFECE 34

The second LIM domain of Prickle: Prickle contains three C-terminal LIM domains and a N-terminal PET domain. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). PCP establishment requires the conserved Frizzled/Dishevelled PCP pathway. Prickle interacts with Dishevelled, thereby modulating Frizzled/Dishevelled activity and PCP signaling. Two forms of prickles have been identified; namely prickle 1 and prickle 2. Prickle 1 and prickle 2 are differentially expressed. While prickle 1 is expressed in fetal heart and hematological malignancies, prickle 2 is found in fetal brain, adult cartilage, pancreatic islet, and some types of timorous cells. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 56

>gnl|CDD|188801 cd09417, LIM2_LIMPETin_like, The second LIM domain of protein LIMPETin and related proteins

 Score = 49.1 bits (117), Expect = 1e-08
 Identities = 21/38 (55%), Positives = 26/38 (68%)

Query: 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
            R   CDELIF  EYT A NK +H  HFCC++CD+ +T
Sbjct: 1   DRSVQCDELIFSGEYTKAMNKDWHSGHFCCWQCDESLT 38

The second LIM domain of protein LIMPETin: LIMPETin contains 6 LIM domains at the C-terminal and an N-terminal PET domain. Four of the six LIM domains are highly homologous to the four and half LIM domain protein family and two of them show sequence similarity to the LIM domains of the testin family. Thus, LIMPETin may be the recombinant product of genes coding testin and FHL proteins. In Schistosoma mansoni, where LIMPETin was first identified, LIMPETin is down regulated in sexually mature adult Schistosoma females compared to sexually immature adult females and adult male. Its differential expression indicates that it is a transcription regulator. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 56

>gnl|CDD|188711 cd08368, LIM, LIM is a small protein-protein interaction domain, containing two zinc fingers

 Score = 45.8 bits (109), Expect = 2e-07
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 131
           C  CG+ +   +L     K      WHP+CF CS C + L    ++   G  YC + Y
Sbjct: 1   CAGCGKPIEGRELLRALGKK-----WHPECFKCSVCGKPLGGDSFYEKDGKPYCEKCY 53

LIM domains are identified in a diverse group of proteins with wide variety of biological functions, including gene expression regulation, cell fate determination, cytoskeleton organization, tumor formation and development. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. They perform their functions through interactions with other protein partners. LIM domains are 50-60 amino acids in size and share two characteristic highly conserved zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The consensus sequence of LIM domain has been defined as C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16, 21)-C-x(2,3)-[CHD] (where X denotes any amino acid). Length = 53

>gnl|CDD|215907 pfam00412, LIM, LIM domain

 Score = 41.9 bits (99), Expect = 5e-06
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYAT 133
           C  CG+ +          +   +V WHP+CF C+ C + L    +F   G +YC  DY  
Sbjct: 1   CAGCGKPIYD---RELVRRALGKV-WHPECFRCAVCGKPLGPGDFFEKDGKLYCKHDYFK 56

Query: 134 M 134
           +
Sbjct: 57  L 57

This family represents two copies of the LIM structural domain. Length = 58

>gnl|CDD|214528 smart00132, LIM, Zinc-binding domain present in Lin-11, Isl-1, Mec-3

 Score = 41.2 bits (97), Expect = 8e-06
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRD 130
           C  CG+ +   +  +         +WHP+CF C+TC + L    +F   G +YC   
Sbjct: 2   CAGCGKPIYGTERVL----RALGKVWHPECFKCATCGKPLSGDTFFEKDGKLYCKDC 54

Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways. Length = 54

>gnl|CDD|188717 cd09331, LIM1_PINCH, The first LIM domain of protein PINCH

 Score = 41.2 bits (97), Expect = 8e-06
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 98  LWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATM 134
           L+H QCFVC+ C +   D +++ ++G  YC  D+  +
Sbjct: 21  LYHEQCFVCAQCFQPFPDGLFYEFEGRKYCEHDFQVL 57

The first LIM domain of paxillin: Paxillin is an adaptor protein, which recruits key components of the signal-transduction machinery to specific sub-cellular locations to respond to environmental changes rapidly. The C-terminal region of paxillin contains four LIM domains which target paxillin to focal adhesions, presumably through a direct association with the cytoplasmic tail of beta-integrin. The N-terminal of paxillin is leucine-rich LD-motifs. Paxillin is found at the interface between the plasma membrane and the actin cytoskeleton. The binding partners of paxillin are diverse and include protein tyrosine kinases, such as Src and FAK, structural proteins, such as vinculin and actopaxin, and regulators of actin organization. Paxillin recruits these proteins to their function sites to control the dynamic changes in cell adhesion, cytoskeletal reorganization and gene expression. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 59

>gnl|CDD|188715 cd09329, LIM3_abLIM, The third LIM domain of actin binding LIM (abLIM) proteins

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 131
           C  CGQE+++G   +  +K      WH  CF C  C ++L    Y    G  YC RDY
Sbjct: 1   CAGCGQEIKNGQALLALDKQ-----WHVWCFKCKECGKVL-TGEYMGKDGKPYCERDY 52

The third LIM domain of actin binding LIM (abLIM) proteins: Three homologous members of the abLIM protein family have been identified; abLIM-1, abLIM-2 and abLIM-3. The N-terminal of abLIM consists of four tandem repeats of LIM domains and the C-terminal of acting binding LIM protein is a villin headpiece domain, which has strong actin binding activity. The abLIM-1, which is expressed in retina, brain, and muscle tissue, has been indicated to function as a tumor suppressor. AbLIM-2 and -3, mainly expressed in muscle and neuronal tissue, bind to F-actin strongly. They may serve as a scaffold for signaling modules of the actin cytoskeleton and thereby modulate transcription. It has shown that LIM domains of abLIMs interact with STARS (striated muscle activator of Rho signaling), which directly binds actin and stimulates serum-response factor (SRF)-dependent transcription. All LIM domains are 50-60 amino acids in size and share two characteristic highly conserved zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 52

>gnl|CDD|188711 cd08368, LIM, LIM is a small protein-protein interaction domain, containing two zinc fingers

 Score = 39.6 bits (93), Expect = 3e-05
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 140 CHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
           C  C + I   E   A  K +H + F C  C K + 
Sbjct: 1   CAGCGKPIEGRELLRALGKKWHPECFKCSVCGKPLG 36

LIM domains are identified in a diverse group of proteins with wide variety of biological functions, including gene expression regulation, cell fate determination, cytoskeleton organization, tumor formation and development. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. They perform their functions through interactions with other protein partners. LIM domains are 50-60 amino acids in size and share two characteristic highly conserved zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The consensus sequence of LIM domain has been defined as C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16, 21)-C-x(2,3)-[CHD] (where X denotes any amino acid). Length = 53

>gnl|CDD|215907 pfam00412, LIM, LIM domain

 Score = 38.5 bits (90), Expect = 7e-05
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 140 CHACDELIFVNEYTL-AENKTFHVKHFCCYECDKIIT 175
           C  C + I+  E    A  K +H + F C  C K + 
Sbjct: 1   CAGCGKPIYDRELVRRALGKVWHPECFRCAVCGKPLG 37

This family represents two copies of the LIM structural domain. Length = 58

>gnl|CDD|214528 smart00132, LIM, Zinc-binding domain present in Lin-11, Isl-1, Mec-3

 Score = 36.6 bits (85), Expect = 4e-04
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 139 RCHACDELIFVNEYTL-AENKTFHVKHFCCYECDKIIT 175
           +C  C + I+  E  L A  K +H + F C  C K ++
Sbjct: 1   KCAGCGKPIYGTERVLRALGKVWHPECFKCATCGKPLS 38

Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways. Length = 54

>gnl|CDD|188722 cd09336, LIM1_Paxillin_like, The first LIM domain of the paxillin like protein family

 Score = 36.5 bits (85), Expect = 4e-04
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 99  WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 131
           WHP+ FVC+ C   L    +F   G  YC +DY
Sbjct: 20  WHPEHFVCAECKTELGTKNFFERDGQPYCEKDY 52

The first LIM domain of the paxillin like protein family: This family consists of paxillin, leupaxin, Hic-5 (ARA55), and other related proteins. There are four LIM domains in the C-terminal of the proteins and leucine-rich LD-motifs in the N-terminal region. Members of this family are adaptor proteins to recruit key components of signal-transduction machinery to specific sub-cellular locations. Paxillin is found at the interface between the plasma membrane and the actin cytoskeleton. Paxillin serves as a platform for the recruitment of numerous regulatory and structural proteins that together control the dynamic changes in cell adhesion, cytoskeletal reorganization and gene expression that are necessary for cell migration and survival. Leupaxin is a cytoskeleton adaptor protein, which is preferentially expressed in hematopoietic cells. It associates with focal adhesion kinases PYK2 and pp125FAK and identified to be a component of the osteoclast pososomal signaling complex. Hic-5 controls cell proliferation, migration and senescence by functioning as coactivator for steroid receptors such as androgen receptor, glucocorticoid receptor and progesterone receptor. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 53

>gnl|CDD|188724 cd09338, LIM3_Paxillin_like, The third LIM domain of the paxillin like protein family

 Score = 36.5 bits (85), Expect = 4e-04
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 131
           C  C + +    L  Y   L  Q  WHP+CFVC  C +  ++  +F ++G  YC   Y
Sbjct: 1   CGGCNKPI----LENYISALNTQ--WHPECFVCRECHKPFINGSFFEHEGLPYCETHY 52

The third LIM domain of the paxillin like protein family: This family consists of paxillin, leupaxin, Hic-5 (ARA55), and other related proteins. There are four LIM domains in the C-terminal of the proteins and leucine-rich LD-motifs in the N-terminal region. Members of this family are adaptor proteins to recruit key components of signal-transduction machinery to specific sub-cellular locations. Paxillin is found at the interface between the plasma membrane and the actin cytoskeleton. Paxillin serves as a platform for the recruitment of numerous regulatory and structural proteins that together control the dynamic changes in cell adhesion, cytoskeletal reorganization and gene expression that are necessary for cell migration and survival. Leupaxin is a cytoskeleton adaptor protein, which is preferentially expressed in hematopoietic cells. It associates with focal adhesion kinases PYK2 and pp125FAK and identified to be a component of the osteoclast pososomal signaling complex. Hic-5 controls cell proliferation, migration and senescence by functioning as coactivator for steroid receptors such as androgen receptor, glucocorticoid receptor and progesterone receptor. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 53

>gnl|CDD|188747 cd09361, LIM1_Enigma_like, The first LIM domain of Enigma-like family

 Score = 35.8 bits (83), Expect = 8e-04
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 131
           C  C Q +R   L      +     WHP+ F CS C   L ++ +   KG++YC   Y
Sbjct: 1   CAHCNQVIRGPFL------VALGRSWHPEEFTCSHCHCSLAEIGFVEEKGSLYCELCY 52

The first LIM domain of Enigma-like family: The Enigma LIM domain family is comprised of three members: Enigma, ENH, and Cypher (mouse)/ZASP (human). These subfamily members contain a single PDZ domain at the N-terminus and three LIM domains at the C-terminus. Enigma was initially characterized in humans and is expressed in multiple tissues, such as skeletal muscle, heart, bone, and brain. The third LIM domain specifically interacts with the insulin receptor and the second LIM domain interacts with the receptor tyrosine kinase Ret and the adaptor protein APS. Thus Enigma is implicated in signal transduction processes, such as mitogenic activity, insulin related actin organization, and glucose metabolism. The second member, ENH protein, was first identified in rat brain. It has been shown that ENH interacts with protein kinase D1 (PKD1) via its LIM domains and forms a complex with PKD1 and the alpha1C subunit of cardiac L-type voltage-gated calcium channel in rat neonatal cardiomyocytes. The N-terminal PDZ domain interacts with alpha-actinin at the Z-line. ZASP/Cypher is required for maintenance of Z-line structure during muscle contraction, but not required for Z-line assembly. In heart, Cypher/ZASP plays a structural role through its interaction with cytoskeletal Z-line proteins. In addition, there is increasing evidence that Cypher/ZASP also performs signaling functions. Studies reveal that Cypher/ZASP interacts with and directs PKC to the Z-line, where PKC phosphorylates downstream signaling targets. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 52

>gnl|CDD|188793 cd09409, LIM3_Paxillin, The third LIM domain of paxillin

 Score = 35.6 bits (82), Expect = 0.001
 Identities = 15/34 (44%), Positives = 19/34 (55%)

Query: 98  LWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 131
           LWHP+CFVC  C    V+  +F + G  YC   Y
Sbjct: 19  LWHPECFVCRECFTPFVNGSFFEHDGQPYCEAHY 52

The third LIM domain of paxillin: Paxillin is an adaptor protein, which recruits key components of the signal-transduction machinery to specific sub-cellular locations to respond to environmental changes rapidly. The C-terminal region of paxillin contains four LIM domains which target paxillin to focal adhesions, presumably through a direct association with the cytoplasmic tail of beta-integrin. The N-terminal of paxillin is leucine-rich LD-motifs. Paxillin is found at the interface between the plasma membrane and the actin cytoskeleton. The binding partners of paxillin are diverse and include protein tyrosine kinases, such as Src and FAK, structural proteins, such as vinculin and actopaxin, and regulators of actin organization. Paxillin recruits these proteins to their function sites to control the dynamic changes in cell adhesion, cytoskeletal reorganization and gene expression. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 53

>gnl|CDD|188749 cd09363, LIM3_Enigma_like, The third LIM domain of Enigma-like family

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYC 127
           C  C   + +GD   + E LG    WH  CFVC+ C   L    ++  K    C
Sbjct: 1   CHGCDFPIEAGDR--FLEALGHT--WHDTCFVCAVCHVNLEGQTFYSKKDKPLC 50

The third LIM domain of Enigma-like family: The Enigma LIM domain family is comprised of three members: Enigma, ENH, and Cypher (mouse)/ZASP (human). These subfamily members contain a single PDZ domain at the N-terminus and three LIM domains at the C-terminus. Enigma was initially characterized in humans and is expressed in multiple tissues, such as skeletal muscle, heart, bone, and brain. The third LIM domain specifically interacts with the insulin receptor and the second LIM domain interacts with the receptor tyrosine kinase Ret and the adaptor protein APS. Thus Enigma is implicated in signal transduction processes, such as mitogenic activity, insulin related actin organization, and glucose metabolism. The second member, ENH protein, was first identified in rat brain. It has been shown that ENH interacts with protein kinase D1 (PKD1) via its LIM domains and forms a complex with PKD1 and the alpha1C subunit of cardiac L-type voltage-gated calcium channel in rat neonatal cardiomyocytes. The N-terminal PDZ domain interacts with alpha-actinin at the Z-line. ZASP/Cypher is required for maintenance of Z-line structure during muscle contraction, but not required for Z-line assembly. In heart, Cypher/ZASP plays a structural role through its interaction with cytoskeletal Z-line proteins. In addition, there is increasing evidence that Cypher/ZASP also performs signaling functions. Studies reveal that Cypher/ZASP interacts with and directs PKC to the Z-line, where PKC phosphorylates downstream signaling targets. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 54

>gnl|CDD|188773 cd09387, LIM2_LMO4, The second LIM domain of LMO4 (LIM domain only protein 4)

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHY-KGNVYCLRD 130
           C  CGQ + + +L +  +      ++H +CF CSTC   LV    FHY  G+++C  D
Sbjct: 1   CSACGQSIPASELVMRAQ----GNVYHLKCFTCSTCHNQLVPGDRFHYVNGSLFCEHD 54

The second LIM domain of LMO4 (LIM domain only protein 4): LMO4 is a nuclear protein that plays important roles in transcriptional regulation and development. LMO4 is involved in various functions in tumorigenesis and cellular differentiation. LMO4 proteins regulate gene expression by interacting with a wide variety of transcription factors and cofactors to form large transcription complexes. It can interact with Smad proteins, and associate with the promoter of the PAI-1 (plasminogen activator inhibitor-1) gene in a TGFbeta (transforming growth factor beta)-dependent manner. LMO4 can also form a complex with transcription regulator CREB (cAMP response element-binding protein) and interact with CLIM1 and CLIM2. In breast tissue, LMO4 interacts with multiple proteins, including the cofactor CtIP [CtBP (C-terminal binding protein)-interacting protein], the breast and ovarian tumor suppressor BRCA1 (breast-cancer susceptibility gene 1) and the LIM-domain-binding protein LDB1. Functionally, LMO4 is shown to repress BRCA1-mediated transcription activation, thus invoking a potential role for LMO4 as a negative regulator of BRCA1 in sporadic breast cancer. LMO4 also forms complex to both ERa (oestrogen receptor alpha), MTA1 (metastasis tumor antigen 1), and HDACs (histone deacetylases), implying that LMO4 is also a component of the MTA1 corepressor complex. Over-expressed LMO4 represses ERa transactivation functions in an HDAC-dependent manner, and contributes to the process of breast cancer progression by allowing the development of Era-negative phenotypes. All LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 55

>gnl|CDD|188836 cd09452, LIM1_Enigma, The first LIM domain of Enigma

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 131
           C QC + +R      Y   LG    +HP+ F CS C ++L +  +F  KG+++C + Y
Sbjct: 1   CAQCNKIIR----GRYLVALGRS--YHPEEFTCSQCKKVLDEGGFFEEKGSIFCPKCY 52

The first LIM domain of Enigma: Enigma was initially characterized in humans as a protein containing three LIM domains at the C-terminus and a PDZ domain at N-terminus. The third LIM domain specifically interacts with the insulin receptor and the second LIM domain interacts with the receptor tyrosine kinase Ret and the adaptor protein APS. Thus Enigma is implicated in signal transduction processes such as mitogenic activity, insulin related actin organization, and glucose metabolism. Enigma is expressed in multiple tissues, such as skeletal muscle, heart, bone and brain. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 52

>gnl|CDD|188750 cd09364, LIM1_LIMK, The first LIM domain of LIMK (LIM domain Kinase )

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 131
           C  C  ++       Y + L     WH  CF CS C + L +  YF   G +YC +DY
Sbjct: 1   CAGCRGKILDSQ---YVQALNQD--WHCDCFRCSVCSDSLSN-WYFEKDGKLYCRKDY 52

The first LIM domain of LIMK (LIM domain Kinase ): LIMK protein family is comprised of two members LIMK1 and LIMK2. LIMK contains two LIM domains, a PDZ domain and a kinase domain. LIMK is involved in the regulation of actin polymerization and microtubule disassembly. LIMK influences architecture of the actin cytoskeleton by regulating the activity of the cofilin family proteins cofilin1, cofilin2, and destrin. The mechanism of the activation is to phosphorylates cofilin on serine 3 and inactivates its actin-severing activity, and altering the rate of actin depolymerisation. LIMKs can function in both cytoplasm and nucleus and are expressed in all tissues. Both LIMK1 and LIMK2 can act in the nucleus to suppress Rac/Cdc42-dependent cyclin D1 expression. However, LIMK1 and LIMk2 have different cellular locations. While LIMK1 localizes mainly at focal adhesions, LIMK2 is found in cytoplasmic punctae, suggesting that they may have different cellular functions. The LIM domains of LIMK have been shown to play an important role in regulating kinase activity and likely also contribute to LIMK function by acting as sites of protein-to-protein interactions. All LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 53

>gnl|CDD|188789 cd09405, LIM1_Paxillin, The first LIM domain of paxillin

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 99  WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 131
           WHP+ FVC+ C E +    +F   G  YC +DY
Sbjct: 21  WHPEHFVCTHCQEEIGSRNFFERDGQPYCEKDY 53

The first LIM domain of paxillin: Paxillin is an adaptor protein, which recruits key components of the signal-transduction machinery to specific sub-cellular locations to respond to environmental changes rapidly. The C-terminal region of paxillin contains four LIM domains which target paxillin to focal adhesions, presumably through a direct association with the cytoplasmic tail of beta-integrin. The N-terminal of paxillin is leucine-rich LD-motifs. Paxillin is found at the interface between the plasma membrane and the actin cytoskeleton. The binding partners of paxillin are diverse and include protein tyrosine kinases, such as Src and FAK, structural proteins, such as vinculin and actopaxin, and regulators of actin organization. Paxillin recruits these proteins to their function sites to control the dynamic changes in cell adhesion, cytoskeletal reorganization and gene expression. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight cons erved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 54

>gnl|CDD|188805 cd09421, LIM3_LIMPETin, The third LIM domain of protein LIMPETin

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)

Query: 73  TCKQCGQEV--RSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRD 130
            C++C + +   S DL+ Y +K      WH  CF+CS C   LVD  +      +YC   
Sbjct: 4   QCEECSKIIGIDSKDLS-YKDKH-----WHEACFLCSKCKISLVDKPFGSKADRIYCGNC 57

Query: 131 Y 131
           Y
Sbjct: 58  Y 58

The third LIM domain of protein LIMPETin: LIMPETin contains 6 LIM domains at the C-terminal and an N-terminal PET domain. Four of the six LIM domains are highly homologous to the four and half LIM domain protein family and two of them show sequence similarity to the LIM domains of the testin family. Thus, LIMPETin may be the recombinant product of genes coding testin and FHL proteins. In Schistosoma mansoni, where LIMPETin was first identified, LIMPETin is down regulated in sexually mature adult Schistosoma females compared to sexually immature adult females and adult male. Its differential expression indicates that it is a transcription regulator. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 59

>gnl|CDD|188847 cd09463, LIM1_LIMK2, The first LIM domain of LIMK2 (LIM domain Kinase 2)

 Score = 34.1 bits (78), Expect = 0.004
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 99  WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 131
           WH  CF CS C +LL +  Y+   G +YC + Y
Sbjct: 21  WHNSCFQCSVCQDLLTN-WYYEKDGKLYCHKHY 52

The first LIM domain of LIMK2 (LIM domain Kinase 2): LIMK2 is a member of the LIMK protein family, which comprises LIMK1 and LIMK2. LIMK contains two LIM domains, a PDZ domain, and a kinase domain. LIMK is involved in the regulation of actin polymerization and microtubule disassembly. LIMK influences architecture of the actin cytoskeleton by regulating the activity of the cofilin family proteins cofilin1, cofilin2, and destrin. The mechanism of the activation is to phosphorylates cofilin on serine 3 and inactivates its actin-severing activity, altering the rate of actin depolymerization. LIMK activity is activated by phosphorylation of a threonine residue within the activation loop of the kinase by p21-activated kinases 1 and 4 and by Rho kinase. LIMKs can function in both cytoplasm and nucleus. Both LIMK1 and LIMK2 can act in the nucleus to suppress Rac/Cdc42-dependent cyclin D1 expression. LIMK2 is expressed in all tissues. While LIMK1 localizes mainly at focal adhesions, LIMK2 is found in cytoplasmic punctae, suggesting that they may have different cellular functions. The activity of LIM kinase 2 to regulate cofilin phosphorylation is inhibited by the direct binding of Par-3. LIMK2 activation promotes cell cycle progression. The phenotype of Limk2 knockout mice shows a defect in spermatogenesis. The LIM domains have been shown to play an important role in regulating kinase activity and likely also contribute to LIMK function by acting as sites of protein-to-protein interactions. All LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 53

>gnl|CDD|188794 cd09410, LIM3_Leupaxin, The third LIM domain of Leupaxin

 Score = 33.6 bits (77), Expect = 0.004
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYC 127
           C  CG+ V+   L+          +WHP+CFVCS C +   D  +F   G   C
Sbjct: 1   CSGCGRPVKENYLSAA------NGVWHPECFVCSDCLKPFTDGSFFELDGRPLC 48

The third LIM domain of Leupaxin: Leupaxin is a cytoskeleton adaptor protein, which is preferentially expressed in hematopoietic cells. Leupaxin belongs to the paxillin focal adhesion protein family. Same as other members of the family, it has four leucine-rich LD-motifs in the N-terminus and four LIM domains in the C-terminus. It may function in cell type-specific signaling by associating with interaction partners PYK2, FAK, PEP and p95PKL. When expressed in human leukocytic cells, leupaxin significantly suppressed integrin-mediated cell adhesion to fibronectin and the tyrosine phosphorylation of paxillin. These findings indicate that leupaxin may negatively regulate the functions of paxillin during integrin signaling. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 53

>gnl|CDD|188790 cd09406, LIM1_Leupaxin, The first LIM domain of Leupaxin

 Score = 33.7 bits (77), Expect = 0.004
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 99  WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 131
           WHP+ FVC  C + L    +F   G  YC  DY
Sbjct: 22  WHPEHFVCCQCGKELGSRPFFERNGQAYCEEDY 54

The first LIM domain of Leupaxin: Leupaxin is a cytoskeleton adaptor protein, which is preferentially expressed in hematopoietic cells. Leupaxin belongs to the paxillin focal adhesion protein family. Same as other members of the family, it has four leucine-rich LD-motifs in the N-terminus and four LIM domains in the C-terminus. It may function in cell type-specific signaling by associating with interaction partners PYK2, FAK, PEP and p95PKL. When expressed in human leukocytic cells, leupaxin significantly suppressed integrin-mediated cell adhesion to fibronectin and the tyrosine phosphorylation of paxillin. These findings indicate that leupaxin may negatively regulate the functions of paxillin during integrin signaling. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 55

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
KOG1701|consensus	468		99.86
KOG1701|consensus	468		99.85
KOG2272|consensus	332		99.84
KOG2272|consensus	332		99.81
KOG4577|consensus	383		99.76
KOG1044|consensus	670		99.76
KOG1703|consensus	479		99.69
KOG1703|consensus	479		99.58
PF00412	58	LIM: LIM domain; InterPro: IPR001781 Zinc finger (	99.56
KOG1044|consensus	670		99.23
KOG1700|consensus	200		99.21
smart00132	39	LIM Zinc-binding domain present in Lin-11, Isl-1,	98.97
PF00412	58	LIM: LIM domain; InterPro: IPR001781 Zinc finger (	98.92
KOG4577|consensus	383		98.68
smart00132	39	LIM Zinc-binding domain present in Lin-11, Isl-1,	98.66
KOG1700|consensus	200		97.98
KOG1702|consensus	264		97.58
KOG0490|consensus	235		97.49
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	91.34
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	90.93
PF08394	37	Arc_trans_TRASH: Archaeal TRASH domain; InterPro:	89.03
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	85.59
PF09943	101	DUF2175: Uncharacterized protein conserved in arch	85.54
PF09943	101	DUF2175: Uncharacterized protein conserved in arch	85.23
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	80.09

>KOG1701|consensus

Probab=99.86  E-value=1.8e-23  Score=167.31  Aligned_cols=112  Identities=25%  Similarity=0.643  Sum_probs=94.8

Q ss_pred             CCCCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceee-eCCcccCHhH
Q psy15163         52 SGNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFH-YKGNVYCLRD  130 (176)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~-~~g~~yC~~~  130 (176)
                      .+..+||+.||..     +..+|..|++.|.  ++|+.|.    |+.||+.||+|..|++.|.+..|.+ .++++||-.|
T Consensus       320 v~~k~~CE~cyq~-----tlekC~~Cg~~I~--d~iLrA~----GkayHp~CF~Cv~C~r~ldgipFtvd~~n~v~Cv~d  388 (468)
T KOG1701|consen  320 VDGKPYCEGCYQD-----TLEKCNKCGEPIM--DRILRAL----GKAYHPGCFTCVVCARCLDGIPFTVDSQNNVYCVPD  388 (468)
T ss_pred             cCCcccchHHHHH-----HHHHHhhhhhHHH--HHHHHhc----ccccCCCceEEEEeccccCCccccccCCCceeeehh
Confidence            3444666666553     2348999999997  4566775    8899999999999999999988876 7889999999


Q ss_pred             HhhCCCcccccccccccccCc------eEEeCCCccccCCeecccCCcccC
Q psy15163        131 YATMLDIPRCHACDELIFVNE------YTLAENKTFHVKHFCCYECDKIIT  175 (176)
Q Consensus       131 y~~~~~~~~C~~C~~~I~~~~------~~~a~~~~~H~~CF~C~~C~~~l~  175 (176)
                      |+++|+ |+|+.|+++|+..+      .|.++++.||.+||+|..|+..|+
T Consensus       389 fh~kfA-PrCs~C~~PI~P~~G~~etvRvvamdr~fHv~CY~CEDCg~~LS  438 (468)
T KOG1701|consen  389 FHKKFA-PRCSVCGNPILPRDGKDETVRVVAMDRDFHVNCYKCEDCGLLLS  438 (468)
T ss_pred             hhhhcC-cchhhccCCccCCCCCcceEEEEEccccccccceehhhcCcccc
Confidence            999999 99999999998642      256999999999999999999987

>KOG1701|consensus

Probab=99.85  E-value=1.4e-23  Score=167.94  Aligned_cols=97  Identities=31%  Similarity=0.658  Sum_probs=90.0

Q ss_pred             ccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccccccccccCce
Q psy15163         73 TCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEY  152 (176)
Q Consensus        73 ~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C~~~I~~~~~  152 (176)
                      +|.+|+|.|...+..+.|+    ++.||..||+|..|++.|.+..||..++++||+.||.+.+  .||..|+++|++ .|
T Consensus       276 iC~~C~K~V~g~~~ac~Am----~~~fHv~CFtC~~C~r~L~Gq~FY~v~~k~~CE~cyq~tl--ekC~~Cg~~I~d-~i  348 (468)
T KOG1701|consen  276 ICAFCHKTVSGQGLAVEAM----DQLFHVQCFTCRTCRRQLAGQSFYQVDGKPYCEGCYQDTL--EKCNKCGEPIMD-RI  348 (468)
T ss_pred             hhhhcCCcccCcchHHHHh----hhhhcccceehHhhhhhhccccccccCCcccchHHHHHHH--HHHhhhhhHHHH-HH
Confidence            8999999999888878887    8899999999999999999999999999999999998775  599999999965 58


Q ss_pred             EEeCCCccccCCeecccCCcccCC
Q psy15163        153 TLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       153 ~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      ++|+|+.||+.||+|..|.+.|++
T Consensus       349 LrA~GkayHp~CF~Cv~C~r~ldg  372 (468)
T KOG1701|consen  349 LRALGKAYHPGCFTCVVCARCLDG  372 (468)
T ss_pred             HHhcccccCCCceEEEEeccccCC
Confidence            889999999999999999998864

>KOG2272|consensus

Probab=99.84  E-value=1.5e-22  Score=152.43  Aligned_cols=115  Identities=26%  Similarity=0.614  Sum_probs=102.5

Q ss_pred             cCCCCCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHh
Q psy15163         50 HGSGNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLR  129 (176)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~  129 (176)
                      +.-.+..||.+|.++++-+    +|+.|+++|.  +.++.++    |+.||.++|+|+.|.+|+-+...|++.|..||+.
T Consensus       178 Revk~eLyClrChD~mgip----iCgaC~rpIe--ervi~am----gKhWHveHFvCa~CekPFlGHrHYEkkGlaYCe~  247 (332)
T KOG2272|consen  178 REVKGELYCLRCHDKMGIP----ICGACRRPIE--ERVIFAM----GKHWHVEHFVCAKCEKPFLGHRHYEKKGLAYCET  247 (332)
T ss_pred             hhhccceeccccccccCCc----ccccccCchH--HHHHHHh----ccccchhheeehhcCCcccchhhhhhcCchhHHH
Confidence            3345568999999998877    9999999997  4555665    8899999999999999998889999999999999


Q ss_pred             HHhhCCCcccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163        130 DYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       130 ~y~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      +|.++|+ ..|..|+..| ++++++|+++.|-++||.|+.|++.|.+
T Consensus       248 h~~qLfG-~~CF~C~~~i-~G~vv~al~KawCv~cf~Cs~Cdkkl~~  292 (332)
T KOG2272|consen  248 HYHQLFG-NLCFICNRVI-GGDVVSALNKAWCVECFSCSTCDKKLTQ  292 (332)
T ss_pred             HHHHHhh-hhheecCCcc-CccHHHHhhhhhcccccccccccccccc
Confidence            9999999 9999999999 5567789999999999999999998863

>KOG2272|consensus

Probab=99.81  E-value=5.4e-22  Score=149.35  Aligned_cols=101  Identities=29%  Similarity=0.733  Sum_probs=93.0

Q ss_pred             CCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCccccccccccccc
Q psy15163         70 SGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFV  149 (176)
Q Consensus        70 ~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C~~~I~~  149 (176)
                      ....|.+|...+.+.|.++...    +..||..||.|.+|-+|+.+..||..+|+.||+.+|..+|+ |.|..|++.|.+
T Consensus        11 ~~~~C~RC~~gF~~~e~~vns~----ge~wH~~CFvCAQCf~pf~~g~~~efEgRkYCEhDF~~Lfa-PcC~kC~EFiiG   85 (332)
T KOG2272|consen   11 ANMVCERCRDGFEPAEKIVNSN----GELWHEQCFVCAQCFRPFPDGIFYEFEGRKYCEHDFHVLFA-PCCGKCGEFIIG   85 (332)
T ss_pred             HHHHHHHHhccCCchhhhhccC----chhhHHHHHHHHHhcCcCCCceeEEecCcccccccchhhhc-hhhcccccchhh
Confidence            3458999999999899888776    88999999999999999999999999999999999999999 999999999987


Q ss_pred             CceEEeCCCccccCCeecccCCcccCC
Q psy15163        150 NEYTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       150 ~~~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      + +|.|++.+|||.||+|..|.+.|.+
T Consensus        86 r-VikamnnSwHp~CF~Cd~Cn~~Lad  111 (332)
T KOG2272|consen   86 R-VIKAMNNSWHPACFRCDLCNKHLAD  111 (332)
T ss_pred             H-HHHhhccccCcccchhHHHHHHHhh
Confidence            6 5669999999999999999998864

>KOG4577|consensus

Probab=99.76  E-value=5.5e-21  Score=146.31  Aligned_cols=99  Identities=27%  Similarity=0.680  Sum_probs=88.7

Q ss_pred             CCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCccccccccccccc
Q psy15163         70 SGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFV  149 (176)
Q Consensus        70 ~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C~~~I~~  149 (176)
                      +.+.|+.|++.|. ..+|..+.    ++.||..|++|+.|+.+|.. .+|.+++.+||+.+|.++|+ .||..|...|.+
T Consensus        32 eip~CagC~q~Il-DrFilKvl----~R~wHs~CLkCs~C~~qL~d-rCFsR~~s~yCkedFfKrfG-TKCsaC~~GIpP  104 (383)
T KOG4577|consen   32 EIPICAGCDQHIL-DRFILKVL----DRHWHSSCLKCSDCHDQLAD-RCFSREGSVYCKEDFFKRFG-TKCSACQEGIPP  104 (383)
T ss_pred             ccccccchHHHHH-HHHHHHHH----hhhhhhhhcchhhhhhHHHH-HHhhcCCceeehHHHHHHhC-CcchhhcCCCCh
Confidence            4459999999998 45665665    88999999999999999987 68899999999999999999 999999999987


Q ss_pred             CceE-EeCCCccccCCeecccCCcccC
Q psy15163        150 NEYT-LAENKTFHVKHFCCYECDKIIT  175 (176)
Q Consensus       150 ~~~~-~a~~~~~H~~CF~C~~C~~~l~  175 (176)
                      ..++ .|.+.+||.+||.|..|+.+|.
T Consensus       105 tqVVRkAqd~VYHl~CF~C~iC~R~L~  131 (383)
T KOG4577|consen  105 TQVVRKAQDFVYHLHCFACFICKRQLA  131 (383)
T ss_pred             HHHHHHhhcceeehhhhhhHhhhcccc
Confidence            6665 5999999999999999999885

>KOG1044|consensus

Probab=99.76  E-value=2.5e-19  Score=148.21  Aligned_cols=119  Identities=26%  Similarity=0.625  Sum_probs=99.5

Q ss_pred             cCCCCCcccCCCCCCccCC----CCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcc
Q psy15163         50 HGSGNGVTHGPCGNKLTQP----RSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNV  125 (176)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~----~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~  125 (176)
                      +..+..+.|..|...+...    .+...|++|++.|..++.++++     ++.||..||+|..|...|.+ .|..++|.+
T Consensus       108 t~~gk~~~c~~c~~~~~~~p~~~~~ps~cagc~~~lk~gq~llal-----d~qwhv~cfkc~~c~~vL~g-ey~skdg~p  181 (670)
T KOG1044|consen  108 TFSGKECLCQTCSQPMPVSPAESYGPSTCAGCGEELKNGQALLAL-----DKQWHVSCFKCKSCSAVLNG-EYMSKDGVP  181 (670)
T ss_pred             eecchhhhhhhhcCcccCCcccccCCccccchhhhhhccceeeee-----ccceeeeeeehhhhcccccc-eeeccCCCc
Confidence            3344445666665433221    2456899999999999888777     88999999999999999977 689999999


Q ss_pred             cCHhHHhhCCCcccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163        126 YCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       126 yC~~~y~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      ||+.||.+.|+ -+|..|.+.|.+ .+++|.++.|||.|-+|+.|+.+|++
T Consensus       182 yce~dy~~~fg-vkc~~c~~fisg-kvLqag~kh~HPtCARCsRCgqmF~e  230 (670)
T KOG1044|consen  182 YCEKDYQAKFG-VKCEECEKFISG-KVLQAGDKHFHPTCARCSRCGQMFGE  230 (670)
T ss_pred             chhhhhhhhcC-eehHHhhhhhhh-hhhhccCcccCcchhhhhhhcccccc
Confidence            99999999999 899999999965 46779999999999999999998863

>KOG1703|consensus

Probab=99.69  E-value=2.5e-18  Score=144.87  Aligned_cols=111  Identities=27%  Similarity=0.639  Sum_probs=95.1

Q ss_pred             CCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhh
Q psy15163         54 NGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYAT  133 (176)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~  133 (176)
                      +..+|..|+.+...+    .|.+|+++|. ++.+ .+.    +..||++||.|..|.++|.+..|+..++.+||+.||.+
T Consensus       350 g~~~c~~~~~~~~~p----~C~~C~~~i~-~~~v-~a~----~~~wH~~cf~C~~C~~~~~~~~~~~~~~~pyce~~~~~  419 (479)
T KOG1703|consen  350 GKILCHECFHAPFRP----NCKRCLLPIL-EEGV-CAL----GRLWHPECFVCADCGKPLKNSSFFESDGEPYCEDHYKK  419 (479)
T ss_pred             CCccHHHHHHHhhCc----cccccCCchH-HhHh-hhc----cCeechhceeeecccCCCCCCcccccCCccchhhhHhh
Confidence            334566666666555    9999999998 4555 554    88999999999999999999999999999999999999


Q ss_pred             CCCccccccccccccc-CceEEeCCCccccCCeecccCCcccC
Q psy15163        134 MLDIPRCHACDELIFV-NEYTLAENKTFHVKHFCCYECDKIIT  175 (176)
Q Consensus       134 ~~~~~~C~~C~~~I~~-~~~~~a~~~~~H~~CF~C~~C~~~l~  175 (176)
                      ++. ++|..|.++|+. ...+.+++..||.+||+|+.|.+.|.
T Consensus       420 ~~~-~~~~~~~~p~~~~~~~ie~~~~~~h~~~F~c~~c~~~l~  461 (479)
T KOG1703|consen  420 LFT-TKCDYCKKPVEFGSRQIEADGSPFHGDCFRCANCMKKLT  461 (479)
T ss_pred             hcc-ccchhccchhHhhhhHhhccCccccccceehhhhhcccc
Confidence            999 999999999863 34577999999999999999998876

>KOG1703|consensus

Probab=99.58  E-value=8e-16  Score=129.79  Aligned_cols=98  Identities=26%  Similarity=0.560  Sum_probs=87.0

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccccccccccCc
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNE  151 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C~~~I~~~~  151 (176)
                      +.|..|++.|.....+ .++    ++.||+.+|.|..|...+....+...+|++||..||...+. +.|.+|+.+|.+ .
T Consensus       304 p~c~~c~~~i~~~~~i-~~~----~~~~h~~~~~c~~~~~~~~~~~~~~~~g~~~c~~~~~~~~~-p~C~~C~~~i~~-~  376 (479)
T KOG1703|consen  304 PLCLSCNQKIRSVKVI-VAL----GKEWHPEHFSCEVCAIVILDGGPRELDGKILCHECFHAPFR-PNCKRCLLPILE-E  376 (479)
T ss_pred             ccccccccCcccceeE-eec----cccccccceeeccccccccCCCccccCCCccHHHHHHHhhC-ccccccCCchHH-h
Confidence            6999999999843444 554    88999999999999999988888889999999999999999 999999999976 4


Q ss_pred             eEEeCCCccccCCeecccCCcccCC
Q psy15163        152 YTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       152 ~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      +|.|+++.||++||+|..|+++|.+
T Consensus       377 ~v~a~~~~wH~~cf~C~~C~~~~~~  401 (479)
T KOG1703|consen  377 GVCALGRLWHPECFVCADCGKPLKN  401 (479)
T ss_pred             HhhhccCeechhceeeecccCCCCC
Confidence            6668899999999999999988764

>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.56  E-value=3.6e-15  Score=90.61  Aligned_cols=58  Identities=29%  Similarity=0.820  Sum_probs=52.8

Q ss_pred             cccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCC
Q psy15163         74 CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATML  135 (176)
Q Consensus        74 C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~  135 (176)
                      |.+|+++|.+++.++.+.    ++.||++||+|..|+++|.+..++..++++||+.||.++|
T Consensus         1 C~~C~~~I~~~~~~~~~~----~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~f   58 (58)
T PF00412_consen    1 CARCGKPIYGTEIVIKAM----GKFWHPECFKCSKCGKPLNDGDFYEKDGKPYCKDCYQKRF   58 (58)
T ss_dssp             BTTTSSBESSSSEEEEET----TEEEETTTSBETTTTCBTTTSSEEEETTEEEEHHHHHHHT
T ss_pred             CCCCCCCccCcEEEEEeC----CcEEEccccccCCCCCccCCCeeEeECCEEECHHHHhhhC
Confidence            789999999888776676    8899999999999999998888999999999999998865

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....

>KOG1044|consensus

Probab=99.23  E-value=7.1e-12  Score=104.50  Aligned_cols=86  Identities=23%  Similarity=0.542  Sum_probs=72.6

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccccccccccCc
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNE  151 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C~~~I~~~~  151 (176)
                      ..|..|.+.-. ++++...     ++.||..||.|..|+..|....||.+++.        ++++ +  ..|.+.|.+ +
T Consensus        17 i~c~~c~~kc~-gevlrv~-----d~~fhi~cf~c~~cg~~la~~gff~k~~~--------~~yg-t--~~c~~~~~g-e   78 (670)
T KOG1044|consen   17 IKCDKCRKKCS-GEVLRVN-----DNHFHINCFQCKKCGRNLAEGGFFTKPEN--------RLYG-T--DDCRAFVEG-E   78 (670)
T ss_pred             eehhhhCCccc-cceeEee-----ccccceeeeeccccCCCcccccceecccc--------eeec-c--cchhhhccc-e
Confidence            48999999988 7766555     88999999999999999999899987665        4444 4  678888854 5


Q ss_pred             eEEeCCCccccCCeecccCCcccC
Q psy15163        152 YTLAENKTFHVKHFCCYECDKIIT  175 (176)
Q Consensus       152 ~~~a~~~~~H~~CF~C~~C~~~l~  175 (176)
                      ++.++++.||++||.|+.|+.++.
T Consensus        79 vvsa~gktyh~~cf~cs~ck~pf~  102 (670)
T KOG1044|consen   79 VVSTLGKTYHPKCFSCSTCKSPFK  102 (670)
T ss_pred             eEecccceeccccceecccCCCCC
Confidence            778999999999999999999874

>KOG1700|consensus

Probab=99.21  E-value=1.7e-12  Score=97.74  Aligned_cols=99  Identities=24%  Similarity=0.551  Sum_probs=83.4

Q ss_pred             CcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCC---------------
Q psy15163         71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATML---------------  135 (176)
Q Consensus        71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~---------------  135 (176)
                      ...|..|++.++..+.+. .+    +..||+.||.|..|...|....+..+++.+||+.+|...+               
T Consensus         7 ~~kc~~c~k~vy~~e~~~-~~----g~~~hk~c~~c~~~~k~l~~~~~~~~e~~~yc~~~~~~~~~~~~~~~~~~~~~~~   81 (200)
T KOG1700|consen    7 TDKCNACGKTVYFVEKVQ-KD----GVDFHKECFKCEKCKKTLTLSGYSEHEGVPYCKNCHVAQFGPKGGGFGKGFQKAG   81 (200)
T ss_pred             cchhhhccCcchHHHHHh-cc----CcchhhhHHhccccccccccccccccccccccccchHhhhCcccccccccccccC
Confidence            348999999999877765 43    8899999999999999999888999999999999654443               


Q ss_pred             --------------------------CcccccccccccccCceEEeCCCccccCCeecccCCcccC
Q psy15163        136 --------------------------DIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT  175 (176)
Q Consensus       136 --------------------------~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~  175 (176)
                                                . ..|..|++.+.+-+-+...+..||..||+|..|+..|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~c~~c~k~vy~~Ek~~~~~~~~hk~cfrc~~~~~~ls  146 (200)
T KOG1700|consen   82 GLGKDGKSLNESKPNQSAKFQVFAGEK-EKCARCQKTVYPLEKVTGNGLEFHKSCFRCTHCGKKLS  146 (200)
T ss_pred             CCCcccccccccccccchhHHhhhccc-cccccccceeeehHHHhhhhhhhhhhheeecccccccC
Confidence                                      3 47888888887655556789999999999999999886

>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3

Probab=98.97  E-value=3.6e-10  Score=62.55  Aligned_cols=38  Identities=26%  Similarity=0.472  Sum_probs=33.6

Q ss_pred             cccccccccccC-ceEEeCCCccccCCeecccCCcccCC
Q psy15163        139 RCHACDELIFVN-EYTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       139 ~C~~C~~~I~~~-~~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      +|..|+++|.+. .++.+.++.||++||+|..|+.+|.+
T Consensus         1 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~   39 (39)
T smart00132        1 KCAGCGKPIRGGELVLRALGKVWHPECFKCSKCGKPLGG   39 (39)
T ss_pred             CccccCCcccCCcEEEEeCCccccccCCCCcccCCcCcc
Confidence            589999999876 56678999999999999999999864

Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.

>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.92  E-value=7e-10  Score=67.05  Aligned_cols=37  Identities=30%  Similarity=0.618  Sum_probs=33.3

Q ss_pred             ccccccccccCceE-EeCCCccccCCeecccCCcccCC
Q psy15163        140 CHACDELIFVNEYT-LAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       140 C~~C~~~I~~~~~~-~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      |..|+++|.+++++ .++++.||++||+|..|+++|.+
T Consensus         1 C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~   38 (58)
T PF00412_consen    1 CARCGKPIYGTEIVIKAMGKFWHPECFKCSKCGKPLND   38 (58)
T ss_dssp             BTTTSSBESSSSEEEEETTEEEETTTSBETTTTCBTTT
T ss_pred             CCCCCCCccCcEEEEEeCCcEEEccccccCCCCCccCC
Confidence            78999999877765 69999999999999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....

>KOG4577|consensus

Probab=98.68  E-value=1.7e-09  Score=83.60  Aligned_cols=77  Identities=18%  Similarity=0.380  Sum_probs=62.9

Q ss_pred             CCCCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCcccc-CCCceee-eCCcccCHh
Q psy15163         52 SGNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELL-VDLMYFH-YKGNVYCLR  129 (176)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l-~~~~~~~-~~g~~yC~~  129 (176)
                      .++++||...+-+-+..    +|..|...|.+.+.|..|.    +..||..||.|..|+++| .+..||. .++++.|+.
T Consensus        77 R~~s~yCkedFfKrfGT----KCsaC~~GIpPtqVVRkAq----d~VYHl~CF~C~iC~R~L~TGdEFYLmeD~rLvCK~  148 (383)
T KOG4577|consen   77 REGSVYCKEDFFKRFGT----KCSACQEGIPPTQVVRKAQ----DFVYHLHCFACFICKRQLATGDEFYLMEDARLVCKD  148 (383)
T ss_pred             cCCceeehHHHHHHhCC----cchhhcCCCChHHHHHHhh----cceeehhhhhhHhhhcccccCCeeEEeccceeehhh
Confidence            45668887776655554    9999999999988887776    889999999999999999 4456765 788999999


Q ss_pred             HHhhCCC
Q psy15163        130 DYATMLD  136 (176)
Q Consensus       130 ~y~~~~~  136 (176)
                      +|++.-.
T Consensus       149 DYE~Ak~  155 (383)
T KOG4577|consen  149 DYETAKQ  155 (383)
T ss_pred             hHHHHHh
Confidence            9986433

>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3

Probab=98.66  E-value=2.1e-08  Score=55.28  Aligned_cols=38  Identities=39%  Similarity=1.044  Sum_probs=31.7

Q ss_pred             ccccccccccCCCeEEEEeccCCCcccCccCcccccCccccC
Q psy15163         73 TCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLV  114 (176)
Q Consensus        73 ~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~  114 (176)
                      +|..|+++|.+.+.++.+.    ++.||++||+|..|+++|.
T Consensus         1 ~C~~C~~~i~~~~~~~~~~----~~~~H~~Cf~C~~C~~~L~   38 (39)
T smart00132        1 KCAGCGKPIRGGELVLRAL----GKVWHPECFKCSKCGKPLG   38 (39)
T ss_pred             CccccCCcccCCcEEEEeC----CccccccCCCCcccCCcCc
Confidence            4889999998664555554    8899999999999999885

Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.

>KOG1700|consensus

Probab=97.98  E-value=1.3e-06  Score=65.95  Aligned_cols=63  Identities=22%  Similarity=0.566  Sum_probs=55.3

Q ss_pred             CCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCC
Q psy15163         69 RSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD  136 (176)
Q Consensus        69 ~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~  136 (176)
                      .+...|..|.+.+++.+.+...     +..||..||+|..|+..|....+...++.+||..++.+++-
T Consensus       106 g~~~~c~~c~k~vy~~Ek~~~~-----~~~~hk~cfrc~~~~~~ls~~~~~~~~g~l~~~~~~~~~~~  168 (200)
T KOG1700|consen  106 GEKEKCARCQKTVYPLEKVTGN-----GLEFHKSCFRCTHCGKKLSPKNYAALEGVLYCKHHFAQLFK  168 (200)
T ss_pred             ccccccccccceeeehHHHhhh-----hhhhhhhheeecccccccCCcchhhcCCccccchhhheeec
Confidence            4556899999999988887655     88999999999999999999999999999999988877654

>KOG1702|consensus

Probab=97.58  E-value=3.9e-06  Score=62.33  Aligned_cols=59  Identities=27%  Similarity=0.585  Sum_probs=51.3

Q ss_pred             ccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCC
Q psy15163         73 TCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD  136 (176)
Q Consensus        73 ~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~  136 (176)
                      .|..|++.+++.|.+...     ++.||..||+|..|+.+|.-.++-..+.++||..+|....+
T Consensus         6 n~~~cgk~vYPvE~v~cl-----dk~whk~cfkce~c~mtlnmKnyKgy~kkpycn~hYpkq~a   64 (264)
T KOG1702|consen    6 NREDCGKTVYPVEEVKCL-----DKVWHKQCFKCEVCGMTLNMKNYKGYDKKPYCNPHYPKQVA   64 (264)
T ss_pred             hhhhhccccccHHHHhhH-----HHHHHHHhheeeeccCChhhhhccccccCCCcCccccccee
Confidence            688899999988887666     88999999999999999987777778999999999976554

>KOG0490|consensus

Probab=97.49  E-value=7.6e-06  Score=62.78  Aligned_cols=76  Identities=33%  Similarity=0.750  Sum_probs=63.0

Q ss_pred             CcccCccCcccccCccccC--CCceeeeCCcccCHhHHhh--CCCcccccccccccccCc-eEEeCCCccccCCeecccC
Q psy15163         96 QVLWHPQCFVCSTCDELLV--DLMYFHYKGNVYCLRDYAT--MLDIPRCHACDELIFVNE-YTLAENKTFHVKHFCCYEC  170 (176)
Q Consensus        96 ~~~~H~~Cf~C~~C~~~l~--~~~~~~~~g~~yC~~~y~~--~~~~~~C~~C~~~I~~~~-~~~a~~~~~H~~CF~C~~C  170 (176)
                      +..||..|..|..|...|.  ...|.. +|..||..+|..  .+. .+|.+|...|..-+ +..+..++ |.-||.|.+|
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~d~~~~~~~~-~rr~rt~~~~~ql~~ler~f~~~-h~Pd~~~r~~   92 (235)
T KOG0490|consen   16 DRYWHASCLKCAECDNPLGVGDTCFSK-DGSIYCKRDYQREFKFS-KRCARCKFTISQLDELERAFEKV-HLPCFACREC   92 (235)
T ss_pred             cHHHHHHHHhhhhhcchhccCCCcccC-CCcccccccchhhhhcc-ccccCCCCCcCHHHHHHHhhcCC-CcCccchHHH
Confidence            6789999999999999997  444445 999999999998  777 89999999996544 44577777 9999999998


Q ss_pred             Cccc
Q psy15163        171 DKII  174 (176)
Q Consensus       171 ~~~l  174 (176)
                      ...+
T Consensus        93 la~~   96 (235)
T KOG0490|consen   93 LALL   96 (235)
T ss_pred             Hhhc
Confidence            7654

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=91.34  E-value=0.14  Score=30.16  Aligned_cols=37  Identities=14%  Similarity=0.434  Sum_probs=27.1

Q ss_pred             ccccccccccc-cCceEE--eCCCccccCCe----eccc--CCccc
Q psy15163        138 PRCHACDELIF-VNEYTL--AENKTFHVKHF----CCYE--CDKII  174 (176)
Q Consensus       138 ~~C~~C~~~I~-~~~~~~--a~~~~~H~~CF----~C~~--C~~~l  174 (176)
                      .+|..|++.|. +++++.  .=+..||.+|+    .|..  |+..+
T Consensus         6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~g~C~~~~c~~~~   51 (54)
T PF14446_consen    6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKAGGCINYSCGTGF   51 (54)
T ss_pred             ccChhhCCcccCCCCEEECCCCCCcccHHHHhhCCceEeccCCCCc
Confidence            78999999996 345553  56888999998    4766  66554

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=90.93  E-value=0.16  Score=29.94  Aligned_cols=31  Identities=26%  Similarity=0.649  Sum_probs=20.7

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCc
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCF  104 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf  104 (176)
                      .+|..|+++|.+++-++.--..  +..||++|.
T Consensus         6 ~~C~~Cg~~~~~~dDiVvCp~C--gapyHR~C~   36 (54)
T PF14446_consen    6 CKCPVCGKKFKDGDDIVVCPEC--GAPYHRDCW   36 (54)
T ss_pred             ccChhhCCcccCCCCEEECCCC--CCcccHHHH
Confidence            4899999999633334333334  458888887

>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators

Probab=89.03  E-value=0.17  Score=27.41  Aligned_cols=32  Identities=28%  Similarity=0.580  Sum_probs=23.1

Q ss_pred             ccccccccccCceE-EeCCCccccCCeecccCCccc
Q psy15163        140 CHACDELIFVNEYT-LAENKTFHVKHFCCYECDKII  174 (176)
Q Consensus       140 C~~C~~~I~~~~~~-~a~~~~~H~~CF~C~~C~~~l  174 (176)
                      |..|++.|.+++++ ...++.||   |.|..|...|
T Consensus         1 Cd~CG~~I~~eP~~~k~~~~~y~---fCC~tC~~~f   33 (37)
T PF08394_consen    1 CDYCGGEITGEPIVVKIGNKVYY---FCCPTCLSQF   33 (37)
T ss_pred             CCccCCcccCCEEEEEECCeEEE---EECHHHHHHH
Confidence            77899999887764 57888887   5555555443

It is thought to function as a metal-sensing regulatory module [].

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=85.59  E-value=0.58  Score=31.09  Aligned_cols=29  Identities=21%  Similarity=0.553  Sum_probs=21.1

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCc
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCF  104 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf  104 (176)
                      ..|..|+++|....+++...    |..+|..|+
T Consensus        79 ~~C~vC~k~l~~~~f~~~p~----~~v~H~~C~  107 (109)
T PF10367_consen   79 TKCSVCGKPLGNSVFVVFPC----GHVVHYSCI  107 (109)
T ss_pred             CCccCcCCcCCCceEEEeCC----CeEEecccc
Confidence            47999999998665555543    666787775

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function

Probab=85.54  E-value=0.31  Score=32.53  Aligned_cols=31  Identities=29%  Similarity=0.621  Sum_probs=23.8

Q ss_pred             ccccccccccCCCeEEEEeccCCCcccCccCcccc
Q psy15163         73 TCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCS  107 (176)
Q Consensus        73 ~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~  107 (176)
                      .|..|+++|+.++......    +..-|.+||+=.
T Consensus         4 kC~iCg~~I~~gqlFTF~~----kG~VH~~C~~~~   34 (101)
T PF09943_consen    4 KCYICGKPIYEGQLFTFTK----KGPVHYECFREK   34 (101)
T ss_pred             EEEecCCeeeecceEEEec----CCcEeHHHHHHH
Confidence            7999999999888764443    557899998744

>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function

Probab=85.23  E-value=0.25  Score=33.00  Aligned_cols=28  Identities=18%  Similarity=0.502  Sum_probs=22.0

Q ss_pred             cccccccccccCceE-EeCCCccccCCee
Q psy15163        139 RCHACDELIFVNEYT-LAENKTFHVKHFC  166 (176)
Q Consensus       139 ~C~~C~~~I~~~~~~-~a~~~~~H~~CF~  166 (176)
                      +|..|+++|..++.. ...+..-|-+||+
T Consensus         4 kC~iCg~~I~~gqlFTF~~kG~VH~~C~~   32 (101)
T PF09943_consen    4 KCYICGKPIYEGQLFTFTKKGPVHYECFR   32 (101)
T ss_pred             EEEecCCeeeecceEEEecCCcEeHHHHH
Confidence            799999999877654 3556788888885

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=80.09  E-value=1.6  Score=26.69  Aligned_cols=48  Identities=15%  Similarity=0.472  Sum_probs=21.0

Q ss_pred             cccccCccccCCCceeeeCCcccCHhHHhhCCCcccccccccccccCce
Q psy15163        104 FVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEY  152 (176)
Q Consensus       104 f~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C~~~I~~~~~  152 (176)
                      ++|+.|..-|...-....=+..||..|-.+.++ ..|..|+.|--..++
T Consensus         8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~-~~CPvC~~Paw~qD~   55 (65)
T PF14835_consen    8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG-SECPVCHTPAWIQDI   55 (65)
T ss_dssp             TS-SSS-S--SS-B---SSS--B-TTTGGGGTT-TB-SSS--B-S-SS-
T ss_pred             cCCcHHHHHhcCCceeccCccHHHHHHhHHhcC-CCCCCcCChHHHHHH
Confidence            456666666544222334456778888877888 789999987754443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	176
2xqn_T	126	Complex Of The 2nd And 3rd Lim Domains Of Tes With		2e-10
1rut_X	188	Complex Of Lmo4 Lim Domains 1 And 2 With The Ldb1 L		8e-05
2dfy_X	195	Crystal Structure Of A Cyclized Protein Fusion Of L		8e-05

>pdb|2XQN|T Chain T, Complex Of The 2nd And 3rd Lim Domains Of Tes With The Evh1 Domain Of Mena And The N-Terminal Domain Of Actin-Like Protein Arp7a Length = 126

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
           PRC  CDELIF NEYT AEN+ +H+KHFCC++CD I+ 
Sbjct: 4   PRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILA 41

>pdb|1RUT|X Chain X, Complex Of Lmo4 Lim Domains 1 And 2 With The Ldb1 Lid Domain Length = 188

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 9/105 (8%)
Query: 70  SGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHY--KGNVYC 127
           S K C  CG ++    L    +       WH +C  CS+C   L D+    Y   G + C
Sbjct: 4   SWKRCAGCGGKIADRFLLYAMDSY-----WHSRCLKCSSCQAQLGDIGTSSYTKSGMILC 58
Query: 128 LRDYATML-DIPRCHACDELIFVNEYTL-AENKTFHVKHFCCYEC 170
             DY  +  +   C AC + I  +E  + A+   +H+K F C  C
Sbjct: 59  RNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTC 103

>pdb|2DFY|X Chain X, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim Domains 1 And 2 With The Lim Interacting Domain Of Ldb1 Length = 195

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 9/105 (8%)
Query: 70  SGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHY--KGNVYC 127
           S K C  CG ++    L    +       WH +C  CS+C   L D+    Y   G + C
Sbjct: 2   SWKRCAGCGGKIADRFLLYAMDSY-----WHSRCLKCSSCQAQLGDIGTSSYTKSGMILC 56
Query: 128 LRDYATML-DIPRCHACDELIFVNEYTL-AENKTFHVKHFCCYEC 170
             DY  +  +   C AC + I  +E  + A+   +H+K F C  C
Sbjct: 57  RNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTC 101

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	176
2cup_A	101	Skeletal muscle LIM-protein 1; four and half LIM d	2e-21
2cup_A	101	Skeletal muscle LIM-protein 1; four and half LIM d	3e-05
2jtn_A	182	LIM domain-binding protein 1, LIM/homeobox protein	5e-18
2jtn_A	182	LIM domain-binding protein 1, LIM/homeobox protein	2e-06
2jtn_A	182	LIM domain-binding protein 1, LIM/homeobox protein	3e-06
2rgt_A	169	Fusion of LIM/homeobox protein LHX3, linker, INSU	5e-18
2rgt_A	169	Fusion of LIM/homeobox protein LHX3, linker, INSU	1e-10
2rgt_A	169	Fusion of LIM/homeobox protein LHX3, linker, INSU	1e-05
1rut_X	188	Flinc4, fusion protein of LMO4 protein and LIM dom	7e-16
1rut_X	188	Flinc4, fusion protein of LMO4 protein and LIM dom	2e-06
1rut_X	188	Flinc4, fusion protein of LMO4 protein and LIM dom	7e-05
2xjy_A	131	Rhombotin-2; oncoprotein, T-cell leukemia, proto-o	7e-16
2xjy_A	131	Rhombotin-2; oncoprotein, T-cell leukemia, proto-o	2e-05
2xjy_A	131	Rhombotin-2; oncoprotein, T-cell leukemia, proto-o	8e-04
2xqn_T	126	Testin, TESS; metal-binding protein, cytoskeleton,	2e-15
2xqn_T	126	Testin, TESS; metal-binding protein, cytoskeleton,	4e-12
2xqn_T	126	Testin, TESS; metal-binding protein, cytoskeleton,	2e-06
2cuq_A	80	Four and A half LIM domains 3; structural genomics	1e-12
2cuq_A	80	Four and A half LIM domains 3; structural genomics	9e-08
1x64_A	89	Alpha-actinin-2 associated LIM protein; LIM domain	3e-11
1x64_A	89	Alpha-actinin-2 associated LIM protein; LIM domain	1e-05
1x62_A	79	C-terminal LIM domain protein 1; PDZ and LIM domai	8e-11
1x62_A	79	C-terminal LIM domain protein 1; PDZ and LIM domai	1e-04
1x63_A	82	Skeletal muscle LIM-protein 1; LIM domain, four an	1e-10
1x63_A	82	Skeletal muscle LIM-protein 1; LIM domain, four an	3e-08
2dar_A	90	PDZ and LIM domain protein 5; enigma homolog prote	2e-10
2dar_A	90	PDZ and LIM domain protein 5; enigma homolog prote	1e-09
1x61_A	72	Thyroid receptor interacting protein 6; LIM domain	2e-10
1x61_A	72	Thyroid receptor interacting protein 6; LIM domain	2e-04
3f6q_B	72	LIM and senescent cell antigen-like-containing dom	5e-10
3f6q_B	72	LIM and senescent cell antigen-like-containing dom	6e-05
1g47_A	77	Pinch protein; LIM domain, Zn finger, cell adhesio	1e-09
1g47_A	77	Pinch protein; LIM domain, Zn finger, cell adhesio	5e-05
1nyp_A	66	Pinch protein; LIM domain, protein recognition, ce	3e-09
1nyp_A	66	Pinch protein; LIM domain, protein recognition, ce	1e-07
1x4k_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	5e-09
1x4k_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	1e-07
1b8t_A	192	Protein (CRP1); LIM domain, muscle differentiation	9e-09
1b8t_A	192	Protein (CRP1); LIM domain, muscle differentiation	3e-07
1b8t_A	192	Protein (CRP1); LIM domain, muscle differentiation	3e-06
1b8t_A	192	Protein (CRP1); LIM domain, muscle differentiation	3e-05
1iml_A	76	CRIP, cysteine rich intestinal protein; metal-bind	1e-08
1iml_A	76	CRIP, cysteine rich intestinal protein; metal-bind	1e-05
1x3h_A	80	Leupaxin; paxillin family, protein-protein interac	1e-08
1x3h_A	80	Leupaxin; paxillin family, protein-protein interac	1e-08
2cu8_A	76	Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein	1e-08
2cu8_A	76	Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein	5e-06
1wyh_A	72	SLIM 2, skeletal muscle LIM-protein 2; structural	1e-08
1wyh_A	72	SLIM 2, skeletal muscle LIM-protein 2; structural	4e-08
1x4l_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	2e-08
2d8x_A	70	Protein pinch; LIM domain, pinch protein, structur	2e-08
2d8x_A	70	Protein pinch; LIM domain, pinch protein, structur	2e-05
2cur_A	69	Skeletal muscle LIM-protein 1; four and A half LIM	3e-08
2cur_A	69	Skeletal muscle LIM-protein 1; four and A half LIM	2e-07
2dj7_A	80	Actin-binding LIM protein 3; LIM domain, Zn bindin	7e-08
2dj7_A	80	Actin-binding LIM protein 3; LIM domain, Zn bindin	1e-04
1a7i_A	81	QCRP2 (LIM1); LIM domain containing proteins, meta	7e-08
1a7i_A	81	QCRP2 (LIM1); LIM domain containing proteins, meta	2e-05
2d8z_A	70	Four and A half LIM domains 2; skeletal muscle LIM	9e-08
2d8z_A	70	Four and A half LIM domains 2; skeletal muscle LIM	1e-07
1x68_A	76	FHL5 protein; four-and-A-half LIM protein 5, zinc	1e-07
1x6a_A	81	LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc fi	1e-07
1x6a_A	81	LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc fi	7e-06
2egq_A	77	FHL1 protein; LIM domain, four and A half LIM doma	1e-07
2egq_A	77	FHL1 protein; LIM domain, four and A half LIM doma	3e-06
1m3v_A	122	FLIN4, fusion of the LIM interacting domain of LDB	1e-07
2l3k_A	123	Rhombotin-2, linker, LIM domain-binding protein 1;	1e-07
2l3k_A	123	Rhombotin-2, linker, LIM domain-binding protein 1;	8e-04
2d8y_A	91	Eplin protein; LIM domain, epithelial protein LOST	2e-07
2d8y_A	91	Eplin protein; LIM domain, epithelial protein LOST	3e-05
2ehe_A	82	Four and A half LIM domains 3; FHL-3, skeletal mus	2e-07
2ehe_A	82	Four and A half LIM domains 3; FHL-3, skeletal mus	4e-06
2l4z_A	123	DNA endonuclease RBBP8, LIM domain transcription L	7e-07
2l4z_A	123	DNA endonuclease RBBP8, LIM domain transcription L	4e-04
2dlo_A	81	Thyroid receptor-interacting protein 6; LIM domain	3e-06
2dlo_A	81	Thyroid receptor-interacting protein 6; LIM domain	3e-05
2co8_A	82	NEDD9 interacting protein with calponin homology a	4e-06
2cor_A	79	Pinch protein; LIM domain, particularly interestin	5e-06
2cor_A	79	Pinch protein; LIM domain, particularly interestin	3e-04
1v6g_A	81	Actin binding LIM protein 2; LIM domain, zinc bind	1e-05
1v6g_A	81	Actin binding LIM protein 2; LIM domain, zinc bind	6e-05
1j2o_A	114	FLIN2, fusion of rhombotin-2 and LIM domain-bindin	2e-05

>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 Length = 101

 Score = 82.5 bits (204), Expect = 2e-21
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 6/101 (5%)

Query: 71  GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRD 130
              C +C + + +    V+ +       WH  CF C+ C   L +  +      + C + 
Sbjct: 5   SSGCVECRKPIGADSKEVHYKNR----FWHDTCFRCAKCLHPLANETFVAKDNKILCNKC 60

Query: 131 YATMLDIPRCHACDELIFVNE-YTLAENKTFHVKHFCCYEC 170
             T  D P+C  C + I   +     +   +H   F     
Sbjct: 61  T-TREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSS 100

>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 Length = 101

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 138 PRCHACDELIFVNEYTL-AENKTFHVKHFCCYECDK 172
             C  C + I  +   +  +N+ +H   F C +C  
Sbjct: 6   SGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLH 41

>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus} Length = 182

 Score = 76.1 bits (187), Expect = 5e-18
 Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 8/125 (6%)

Query: 52  SGNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDE 111
             +                   C  C Q +    +    ++      WH +C  CS C  
Sbjct: 41  GIDDEGGSGGHMGSGGTPEIPMCAGCDQHILDRFILKALDRH-----WHSKCLKCSDCHV 95

Query: 112 LLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTL-AENKTFHVKHFCCYEC 170
            L +   F    +VYC  D+       +C AC   I   +    A++  +H+  F C  C
Sbjct: 96  PLAE-RCFSRGESVYCKDDFFKRFG-TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVC 153

Query: 171 DKIIT 175
            + + 
Sbjct: 154 KRQLA 158

>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus} Length = 182

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 1/76 (1%)

Query: 101 PQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTF 160
            +        +           G+   +    T  +IP C  CD+ I       A ++ +
Sbjct: 25  ERLITRLENTQFDAANGIDDEGGSGGHMGSGGTP-EIPMCAGCDQHILDRFILKALDRHW 83

Query: 161 HVKHFCCYECDKIITQ 176
           H K   C +C   + +
Sbjct: 84  HSKCLKCSDCHVPLAE 99

>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus} Length = 182

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 6/66 (9%)

Query: 71  GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLV--DLMYFHYKGNVYCL 128
           G  C  C   +    +     +  D V +H  CF C  C   L   D  Y      + C 
Sbjct: 119 GTKCAACQLGIPPTQVVR---RAQDFV-YHLHCFACVVCKRQLATGDEFYLMEDSRLVCK 174

Query: 129 RDYATM 134
            DY T 
Sbjct: 175 ADYETA 180

>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A Length = 169

 Score = 76.0 bits (187), Expect = 5e-18
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 8/103 (7%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYAT 133
           C  C Q +    +    ++      WH +C  CS C   L +   F    +VYC  D+  
Sbjct: 9   CAGCDQHILDRFILKALDRH-----WHSKCLKCSDCHVPLAE-RCFSRGESVYCKDDFFK 62

Query: 134 MLDIPRCHACDELIFVNEYTL-AENKTFHVKHFCCYECDKIIT 175
                +C AC   I   +    A++  +H+  F C  C + + 
Sbjct: 63  RFG-TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLA 104

>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A Length = 169

 Score = 56.4 bits (136), Expect = 1e-10
 Identities = 19/99 (19%), Positives = 26/99 (26%), Gaps = 8/99 (8%)

Query: 71  GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLV--DLMYFHYKGNVYCL 128
           G  C  C   +    +     +  D V +H  CF C  C   L   D  Y      + C 
Sbjct: 65  GTKCAACQLGIPPTQVVR---RAQDFV-YHLHCFACVVCKRQLATGDEFYLMEDSRLVCK 120

Query: 129 RDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCC 167
            DY T                    +A +   H      
Sbjct: 121 ADYETAKQ-GGSGGSGGSG-GGTPMVAASPERHDGGLQA 157

>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A Length = 169

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 132 ATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176
            +  +IP C  CD+ I       A ++ +H K   C +C   + +
Sbjct: 1   GSTPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE 45

>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B Length = 188

 Score = 70.8 bits (173), Expect = 7e-16
 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 9/110 (8%)

Query: 70  SGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLM--YFHYKGNVYC 127
           S K C  CG ++    L    +       WH +C  CS+C   L D+    +   G + C
Sbjct: 4   SWKRCAGCGGKIADRFLLYAMDSY-----WHSRCLKCSSCQAQLGDIGTSSYTKSGMILC 58

Query: 128 LRDYATMLDI-PRCHACDELIFVNEYTL-AENKTFHVKHFCCYECDKIIT 175
             DY  +      C AC + I  +E  + A+   +H+K F C  C   + 
Sbjct: 59  RNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLV 108

>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B Length = 188

 Score = 45.0 bits (106), Expect = 2e-06
 Identities = 24/100 (24%), Positives = 35/100 (35%), Gaps = 6/100 (6%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYK-GNVYCLRDYA 132
           C  CGQ + + +L +   +    V +H +CF CSTC   LV    FHY  G+++C  D  
Sbjct: 72  CSACGQSIPASELVM---RAQGNV-YHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRP 127

Query: 133 TMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDK 172
           T L                                   D+
Sbjct: 128 TALI-NGHLNSGGSGGSGGSGGDVMVVGEPTLMGGEFGDE 166

>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B Length = 188

 Score = 40.4 bits (94), Expect = 7e-05
 Identities = 9/42 (21%), Positives = 13/42 (30%)

Query: 135 LDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176
           L   RC  C   I       A +  +H +   C  C   +  
Sbjct: 3   LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGD 44

>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A Length = 131

 Score = 69.0 bits (169), Expect = 7e-16
 Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 9/110 (8%)

Query: 70  SGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHY--KGNVYC 127
           S  TC  C Q +         ++      WH  C  C  C   L ++    Y   G   C
Sbjct: 1   SLLTCGGCQQNIGDRYFLKAIDQY-----WHEDCLSCDLCGCRLGEVGRRLYYKLGRKLC 55

Query: 128 LRDYATMLDI-PRCHACDELIFVNEYTL-AENKTFHVKHFCCYECDKIIT 175
            RDY  +      C +CD+ I   E T+  ++K +H++ F C  C K   
Sbjct: 56  RRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFC 105

>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A Length = 131

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 72  KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGN-VYCLRD 130
             C  C + +R+ ++ +   ++ D+V +H +CF C+ C +       +    + + C +D
Sbjct: 67  GLCASCDKRIRAYEMTM---RVKDKV-YHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 122

Query: 131 YATML 135
                
Sbjct: 123 IYEWT 127

>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A Length = 131

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 7/40 (17%), Positives = 15/40 (37%)

Query: 137 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176
           +  C  C + I    +  A ++ +H     C  C   + +
Sbjct: 2   LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGE 41

>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens} Length = 126

 Score = 67.8 bits (166), Expect = 2e-15
 Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 9/102 (8%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYAT 133
           C  C + + S +      +      WH + F C  CD +L   +Y        C   Y  
Sbjct: 6   CAGCDELIFSNEYTQAENQN-----WHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVK 60

Query: 134 MLDIPRCHACDELIFVNEYTL-AENKTFH--VKHFCCYECDK 172
                 C  C   I      +   N ++H   + F C  C K
Sbjct: 61  NH-AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSK 101

>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens} Length = 126

 Score = 59.3 bits (144), Expect = 4e-12
 Identities = 25/40 (62%), Positives = 32/40 (80%)

Query: 136 DIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
           + PRC  CDELIF NEYT AEN+ +H+KHFCC++CD I+ 
Sbjct: 2   EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILA 41

>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens} Length = 126

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 71  GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRD 130
              C+ C   +      V             +CF+CS C + L+   +   +G V+C  +
Sbjct: 63  AVVCQGCHNAIDPEVQRV--TYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVE 120

Query: 131 Y 131
            
Sbjct: 121 C 121

>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 80

 Score = 59.7 bits (145), Expect = 1e-12
 Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 2/53 (3%)

Query: 123 GNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
            +      Y      PRC  C + +     T   ++ +H +   C  C   + 
Sbjct: 2   SSGSSGPCYENKF-APRCARCSKTLTQGGVT-YRDQPWHRECLVCTGCQTPLA 52

>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 80

 Score = 46.6 bits (111), Expect = 9e-08
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 53  GNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDEL 112
           G+  + GPC      PR    C +C + +  G +            WH +C VC+ C   
Sbjct: 1   GSSGSSGPCYENKFAPR----CARCSKTLTQGGVTY----RDQP--WHRECLVCTGCQTP 50

Query: 113 LVDLMYFHYKGNVYCLRDYATM 134
           L    +     + YC+  +  +
Sbjct: 51  LAGQQFTSRDEDPYCVACFGEL 72

>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3 Length = 89

 Score = 56.0 bits (135), Expect = 3e-11
 Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 11/86 (12%)

Query: 57  THGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDL 116
            HG  G+    P     C +CG  +         +        HP+CFVC+ C+  L   
Sbjct: 15  VHGGAGSAQRMPL----CDKCGSGIVG----AVVKARDKY--RHPECFVCADCNLNLKQK 64

Query: 117 MYFHYKGNVYCLRDYATMLDIPRCHA 142
            YF  +G +YC               
Sbjct: 65  GYFFVEGELYCETHARARTS-GPSSG 89

>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3 Length = 89

 Score = 40.9 bits (96), Expect = 1e-05
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 137 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176
           +P C  C   I V     A +K  H + F C +C+  + Q
Sbjct: 25  MPLCDKCGSGI-VGAVVKARDKYRHPECFVCADCNLNLKQ 63

>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 79

 Score = 54.8 bits (132), Expect = 8e-11
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 11/90 (12%)

Query: 53  GNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDEL 112
           G+  + G  GN    P     C +CG  +      V+ +        HP+C+VC+ C   
Sbjct: 1   GSSGSSGSIGNAQKLP----MCDKCGTGIVG----VFVKLRDRH--RHPECYVCTDCGTN 50

Query: 113 LVDLMYFHYKGNVYCLRDYATMLDIPRCHA 142
           L    +F  +  +YC +     +       
Sbjct: 51  LKQKGHFFVEDQIYCEKHARERVS-GPSSG 79

>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 79

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 137 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176
           +P C  C   I V  +    ++  H + + C +C   + Q
Sbjct: 15  LPMCDKCGTGI-VGVFVKLRDRHRHPECYVCTDCGTNLKQ 53

>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 82

 Score = 54.3 bits (131), Expect = 1e-10
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 123 GNVYCLRDYATMLDIPRCHACDELIFVNE-YTLAENKTFHVKHFCCYECDKII 174
            +    +        P+C  C + I   +     +   +H   F C  C ++I
Sbjct: 2   SSGSSGKCTTRED-SPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVI 53

>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 82

 Score = 47.7 bits (114), Expect = 3e-08
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 8/73 (10%)

Query: 59  GPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMY 118
           G C  +   P+    CK C + + +GD  V  E  G    WH  CF CS C +++    +
Sbjct: 7   GKCTTREDSPK----CKGCFKAIVAGDQNV--EYKGTV--WHKDCFTCSNCKQVIGTGSF 58

Query: 119 FHYKGNVYCLRDY 131
           F    + YC+  +
Sbjct: 59  FPKGEDFYCVTCH 71

>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 90

 Score = 54.0 bits (130), Expect = 2e-10
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 118 YFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176
                  V            P C  C+++I    + +A  K++H + F C  C   +  
Sbjct: 6   SGDQDTLVQRAEHIPAGKRTPMCAHCNQVI-RGPFLVALGKSWHPEEFNCAHCKNTMAY 63

>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 90

 Score = 51.7 bits (124), Expect = 1e-09
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 7/89 (7%)

Query: 52  SGNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDE 111
           SG+  T       +   +    C  C Q +R      +   LG    WHP+ F C+ C  
Sbjct: 6   SGDQDTLVQRAEHIPAGKRTPMCAHCNQVIRGP----FLVALGKS--WHPEEFNCAHCKN 59

Query: 112 LLVDLMYFHYKGNVYCLRDYATMLDIPRC 140
            +  + +   KG +YC   Y         
Sbjct: 60  TMAYIGFVEEKGALYCELCYEKFFA-SGP 87

>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 53.6 bits (129), Expect = 2e-10
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 6/71 (8%)

Query: 73  TCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 132
            C  CG++V      V    L     +H  CFVCSTC   L    ++  +   YC   Y 
Sbjct: 7   GCGGCGEDVVGDGAGV--VALDRV--FHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYV 62

Query: 133 TMLDIPRCHAC 143
             L+     + 
Sbjct: 63  ATLE--SGPSS 71

>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 138 PRCHACDELIFVNEYTL-AENKTFHVKHFCCYECDK 172
             C  C E +  +   + A ++ FHV  F C  C  
Sbjct: 6   SGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRA 41

>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B Length = 72

 Score = 52.4 bits (126), Expect = 5e-10
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 67  QPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVY 126
           Q  +  TC++C       +  V +    +  L+H QCFVC+ C +   + +++ ++G  Y
Sbjct: 7   QGSASATCERCKGGFAPAEKIVNS----NGELYHEQCFVCAQCFQQFPEGLFYEFEGRKY 62

Query: 127 CLRDYATM 134
           C  D+  +
Sbjct: 63  CEHDFQML 70

>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B Length = 72

 Score = 38.5 bits (90), Expect = 6e-05
 Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 1/36 (2%)

Query: 138 PRCHACDELIFVNE-YTLAENKTFHVKHFCCYECDK 172
             C  C       E    +  + +H + F C +C +
Sbjct: 12  ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQ 47

>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 77

 Score = 51.2 bits (123), Expect = 1e-09
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 70  SGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLR 129
           +  TC++C       +  V +       L+H QCFVC+ C +   + +++ ++G  YC  
Sbjct: 10  ASATCERCKGGFAPAEKIVNSNG----ELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEH 65

Query: 130 DYATML 135
           D+  + 
Sbjct: 66  DFQMLF 71

>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 77

 Score = 38.9 bits (91), Expect = 5e-05
 Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 1/36 (2%)

Query: 138 PRCHACDELIFVNE-YTLAENKTFHVKHFCCYECDK 172
             C  C       E    +  + +H + F C +C +
Sbjct: 12  ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQ 47

>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B Length = 66

 Score = 50.0 bits (120), Expect = 3e-09
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 73  TCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 132
            C  C + +           +G Q  WH + FVC+ C++  +   ++  KG  YC   Y 
Sbjct: 7   ICGACRRPIEGR----VVNAMGKQ--WHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYN 60

Query: 133 TM 134
            +
Sbjct: 61  QL 62

>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B Length = 66

 Score = 45.7 bits (109), Expect = 1e-07
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176
           P C AC   I       A  K +HV+HF C +C+K    
Sbjct: 6   PICGACRRPI-EGRVVNAMGKQWHVEHFVCAKCEKPFLG 43

>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 49.7 bits (119), Expect = 5e-09
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 131
           C++C + +  G   +  E  G    WH  CF+C  C + +    +       +C+  Y
Sbjct: 8   CQECKKTIMPGTRKM--EYKGSS--WHETCFICHRCQQPIGTKSFIPKDNQNFCVPCY 61

>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 45.8 bits (109), Expect = 1e-07
 Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 138 PRCHACDELIFVNEYTL-AENKTFHVKHFCCYECDKII 174
             C  C + I      +  +  ++H   F C+ C + I
Sbjct: 6   SGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPI 43

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A Length = 192

 Score = 51.6 bits (123), Expect = 9e-09
 Identities = 16/102 (15%), Positives = 27/102 (26%), Gaps = 6/102 (5%)

Query: 71  GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRD 130
           GK C  C + V   +             +H  CF+C  C + L       +   +YC   
Sbjct: 7   GKKCGVCQKAVYFAEEVQCEGSS-----FHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSC 61

Query: 131 YATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDK 172
           Y      P+                E+     +    +    
Sbjct: 62  YGKKYG-PKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTN 102

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A Length = 192

 Score = 47.3 bits (112), Expect = 3e-07
 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 6/90 (6%)

Query: 56  VTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVD 115
            T+        +      C +CGQ V + +  +   K      WH  CF C+ C + L  
Sbjct: 100 PTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKS-----WHKSCFRCAKCGKSLES 154

Query: 116 LMYFHYKGNVYCLRDYATMLDIPRCHACDE 145
                  G +YC   YA     P+     +
Sbjct: 155 TTLADKDGEIYCKGCYAKNFG-PKGFGFGQ 183

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A Length = 192

 Score = 44.6 bits (105), Expect = 3e-06
 Identities = 14/119 (11%), Positives = 31/119 (26%), Gaps = 17/119 (14%)

Query: 73  TCKQCGQEVRSGDLAVYTEKL----------------GDQVLWHPQCFVCSTCDELLVDL 116
            C  C + + S  +AV+ +++                              +      + 
Sbjct: 36  LCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEG 95

Query: 117 MYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
                                  C  C + ++  E  +   K++H   F C +C K + 
Sbjct: 96  QSHRPTNPNASRMAQKVG-GSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLE 153

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A Length = 192

 Score = 41.9 bits (98), Expect = 3e-05
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
            +C  C + ++  E    E  +FH   F C  C K + 
Sbjct: 8   KKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLD 45

>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3 Length = 76

 Score = 48.9 bits (117), Expect = 1e-08
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
           P+C  CD+ ++  E   +  K +H     C +C K +T
Sbjct: 1   PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLT 38

>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3 Length = 76

 Score = 40.4 bits (95), Expect = 1e-05
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYAT 133
           C +C +EV   +             WH  C  C  C + L    +  ++G  YC     +
Sbjct: 3   CPKCDKEVYFAE-----RVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYS 57

Query: 134 MLDIPRCHAC 143
            +  P+    
Sbjct: 58  AMFGPKGFGR 67

>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 80

 Score = 48.9 bits (117), Expect = 1e-08
 Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 6/64 (9%)

Query: 71  GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRD 130
              C  C + V    L+           WHP+CFVC  C        +F   G  +C   
Sbjct: 15  SPKCGGCNRPVLENYLSAMDTV------WHPECFVCGDCFTSFSTGSFFELDGRPFCELH 68

Query: 131 YATM 134
           Y   
Sbjct: 69  YHHR 72

>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 80

 Score = 48.5 bits (116), Expect = 1e-08
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 123 GNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDK 172
            +    +D+  M   P+C  C+  + +  Y  A +  +H + F C +C  
Sbjct: 2   SSGSSGKDFLAMF-SPKCGGCNRPV-LENYLSAMDTVWHPECFVCGDCFT 49

>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 76

 Score = 48.5 bits (116), Expect = 1e-08
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
            +C  CD+ ++  E   +  K +H     C  C K +T
Sbjct: 10  SKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLT 47

>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 76

 Score = 41.6 bits (98), Expect = 5e-06
 Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 5/62 (8%)

Query: 70  SGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLR 129
               C +C + V   +     +       WH  C  C  C + L    +  + G  +C +
Sbjct: 8   MASKCPKCDKTVYFAE-----KVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHK 62

Query: 130 DY 131
             
Sbjct: 63  PC 64

>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 48.5 bits (116), Expect = 1e-08
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 74  CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 131
           C  CG+ V  G      E  G    WH  CF+CS C++ L    +   KG  YC+  Y
Sbjct: 8   CSACGETVMPGSR--KLEYGGQT--WHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCY 61

>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 47.4 bits (113), Expect = 4e-08
 Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 138 PRCHACDELIFVNE-YTLAENKTFHVKHFCCYECDKIIT 175
             C AC E +           +T+H   F C  C++ + 
Sbjct: 6   SGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLG 44

>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 48.3 bits (115), Expect = 2e-08
 Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 2/61 (3%)

Query: 71  GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRD 130
              C  C   +       Y      Q  WH  CF C  C   LV   +   + ++ C   
Sbjct: 5   SSGCAGCTNPISGLGGTKYISFEERQ--WHNDCFNCKKCSLSLVGRGFLTERDDILCPDC 62

Query: 131 Y 131
            
Sbjct: 63  G 63

>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 70

 Score = 48.2 bits (115), Expect = 2e-08
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 72  KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 131
             C QCG+ +         + + +   WHP+CF C  C E+L D+ +    G   C   +
Sbjct: 6   SGCHQCGEFIIGR----VIKAMNNS--WHPECFRCDLCQEVLADIGFVKNAGRHLCRPCH 59

Query: 132 ATM 134
              
Sbjct: 60  NRE 62

>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 70

 Score = 39.7 bits (93), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 137 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176
              CH C E I +     A N ++H + F C  C +++  
Sbjct: 5   SSGCHQCGEFI-IGRVIKAMNNSWHPECFRCDLCQEVLAD 43

>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 69

 Score = 47.8 bits (114), Expect = 3e-08
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 7/70 (10%)

Query: 72  KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 131
             C +C + + SG +        DQ  WH  CFVC TC + L    +   +   YC+  Y
Sbjct: 6   SGCVKCNKAITSGGITY-----QDQP-WHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCY 59

Query: 132 ATMLDIPRCH 141
              +      
Sbjct: 60  KNFVS-GPSS 68

>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 69

 Score = 45.5 bits (108), Expect = 2e-07
 Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
             C  C++ I     T  +++ +H   F C  C K + 
Sbjct: 6   SGCVKCNKAITSGGIT-YQDQPWHADCFVCVTCSKKLA 42

>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 80

 Score = 47.0 bits (112), Expect = 7e-08
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 67  QPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVY 126
           + R    C  C +E++ G   +  +K      WH  CF C TC  +L    Y    G  Y
Sbjct: 11  KIRGPSHCAGCKEEIKHGQSLLALDKQ-----WHVSCFKCQTCSVILTG-EYISKDGVPY 64

Query: 127 CLRDY 131
           C  DY
Sbjct: 65  CESDY 69

>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 80

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 137 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
              C  C E I   +  LA +K +HV  F C  C  I+T
Sbjct: 15  PSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILT 53

>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A Length = 81

 Score = 47.0 bits (112), Expect = 7e-08
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 71  GKTCKQCGQEVRSGDLAVYTEKL-GDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLR 129
           G  C  CG+ V         E++  D   +H  CF+C  C + L       +   VYC  
Sbjct: 7   GNKCGACGRTVYHA------EEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKS 60

Query: 130 DYATMLDIPRCHACDE 145
            Y      P+ +   +
Sbjct: 61  CYGKKYG-PKGYGYGQ 75

>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A Length = 81

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
            +C AC   ++  E    + ++FH   F C  C K + 
Sbjct: 8   NKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLD 45

>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 70

 Score = 46.2 bits (110), Expect = 9e-08
 Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
             C  C + I     T    + +H + F C  C K ++
Sbjct: 6   SGCVQCKKPITTGGVT-YREQPWHKECFVCTACRKQLS 42

>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 70

 Score = 46.2 bits (110), Expect = 1e-07
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 71  GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRD 130
              C QC + + +G +  Y E+      WH +CFVC+ C + L    +       YCL  
Sbjct: 5   SSGCVQCKKPITTGGV-TYREQP-----WHKECFVCTACRKQLSGQRFTARDDFAYCLNC 58

Query: 131 Y 131
           +
Sbjct: 59  F 59

>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 76

 Score = 46.4 bits (110), Expect = 1e-07
 Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 71  GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYC 127
              C  C + +     A +      Q  WH +CF C  C   LV   +      ++C
Sbjct: 5   SSGCVACSKPISGLTGAKFICFQDSQ--WHSECFNCGKCSVSLVGKGFLTQNKEIFC 59

>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 81

 Score = 46.3 bits (110), Expect = 1e-07
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 123 GNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
            +    +DY        CH C  L+    + +A    +H + F C  C  II 
Sbjct: 2   SSGSSGKDYWGKFG-EFCHGCSLLM-TGPFMVAGEFKYHPECFACMSCKVIIE 52

>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 81

 Score = 41.3 bits (97), Expect = 7e-06
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 9/74 (12%)

Query: 71  GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLV--DLMYFHYKGNVYCL 128
           G+ C  C   +    +     K      +HP+CF C +C  ++   D         +YC 
Sbjct: 15  GEFCHGCSLLMTGPFMVAGEFK------YHPECFACMSCKVIIEDGDAYALVQHATLYCG 68

Query: 129 RDYATMLDIPRCHA 142
           + +  ++       
Sbjct: 69  KCHNEVV-SGPSSG 81

>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 45.9 bits (109), Expect = 1e-07
 Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 5/57 (8%)

Query: 123 GNVYCLRDYATMLDIPRCHACDELI----FVNEYTLAENKTFHVKHFCCYECDKIIT 175
            +      Y   +   +C  C   I      +     E +++H   F C +C   + 
Sbjct: 2   SSGSSGDCYKNFV-AKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLA 57

>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 42.5 bits (100), Expect = 3e-06
 Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 1/61 (1%)

Query: 71  GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRD 130
            K C  C   +              Q  WH  CF C  C   L +  +  ++  VYC   
Sbjct: 15  AKKCAGCKNPITGFGKGSSVVAYEGQS-WHDYCFHCKKCSVNLANKRFVFHQEQVYCPDC 73

Query: 131 Y 131
            
Sbjct: 74  A 74

>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3 Length = 122

 Score = 47.3 bits (112), Expect = 1e-07
 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 7/111 (6%)

Query: 68  PRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLM--YFHYKGNV 125
             S K C  CG ++    L    +       WH +C  CS+C   L D+    +   G +
Sbjct: 2   SLSWKRCAGCGGKIADRFLLYAMDSY-----WHSRCLKCSSCQAQLGDIGTSSYTKSGMI 56

Query: 126 YCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ 176
            C  DY  +            +      +   +   +      E +++IT+
Sbjct: 57  LCRNDYIRLFGNSGAGGSGGHMGSGGDVMVVGEPTLMGGEFGDEDERLITR 107

>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 91

 Score = 46.0 bits (109), Expect = 2e-07
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 60  PCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYF 119
                  Q  + +TC +C + V   +       L +Q ++H  CF CS C+  L    Y 
Sbjct: 4   GSSGMKFQAPARETCVECQKTVYPME-----RLLANQQVFHISCFRCSYCNNKLSLGTYA 58

Query: 120 HYKGNVYCLRDYATM 134
              G +YC   +  +
Sbjct: 59  SLHGRIYCKPHFNQL 73

>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 91

 Score = 39.8 bits (93), Expect = 3e-05
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
             C  C + ++  E  LA  + FH+  F C  C+  ++
Sbjct: 16  ETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLS 53

>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 82

 Score = 45.6 bits (108), Expect = 2e-07
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 72  KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 131
            TC +C Q +      +      D+  +H  CF C  C   L D  +      + C   Y
Sbjct: 16  NTCAECQQLIGHDSREL---FYEDRH-FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCY 71

Query: 132 ATMLDIPRCHA 142
            +        +
Sbjct: 72  CSAFS-SGPSS 81

>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 82

 Score = 42.1 bits (99), Expect = 4e-06
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 123 GNVYCLRDYATMLDIPRCHACDELIFVNEYTL-AENKTFHVKHFCCYECDK 172
            +      Y        C  C +LI  +   L  E++ FH   F C  C +
Sbjct: 2   SSGSSGPCYDNTF-ANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQR 51

>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens} Length = 123

 Score = 45.1 bits (106), Expect = 7e-07
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 7/85 (8%)

Query: 52  SGNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDE 111
                  G  G+  +   S K C  CG ++    L    +       WH +C  CS+C  
Sbjct: 42  QSKLGGGGSGGHMGSGGLSWKRCAGCGGKIADRFLLYAMDSY-----WHSRCLKCSSCQA 96

Query: 112 LLVDLM--YFHYKGNVYCLRDYATM 134
            L D+    +   G + C  DY  +
Sbjct: 97  QLGDIGTSSYTKSGMILCRNDYIRL 121

>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens} Length = 123

 Score = 37.8 bits (87), Expect = 4e-04
 Identities = 9/38 (23%), Positives = 12/38 (31%)

Query: 135 LDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDK 172
           L   RC  C   I       A +  +H +   C  C  
Sbjct: 59  LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQA 96

>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 81

 Score = 42.4 bits (100), Expect = 3e-06
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 8/75 (10%)

Query: 69  RSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYK-GNVYC 127
            + + C  C Q +    L      +G    +HP CF C  C   L  + +       ++C
Sbjct: 13  ATLEKCATCSQPILDRILRA----MGKA--YHPGCFTCVVCHRGLDGIPFTVDATSQIHC 66

Query: 128 LRDYATMLDIPRCHA 142
           + D+          +
Sbjct: 67  IEDFHRKFA-SGPSS 80

>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 81

 Score = 39.7 bits (93), Expect = 3e-05
 Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 137 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
           + +C  C + I ++    A  K +H   F C  C + + 
Sbjct: 15  LEKCATCSQPI-LDRILRAMGKAYHPGCFTCVVCHRGLD 52

>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 82

 Score = 42.2 bits (99), Expect = 4e-06
 Identities = 10/38 (26%), Positives = 15/38 (39%)

Query: 138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
             C  C E ++V E        FH   F C+ C+  + 
Sbjct: 16  DLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLW 53

>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 79

 Score = 41.7 bits (98), Expect = 5e-06
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 9/78 (11%)

Query: 59  GPCGNKLTQPRSGKT--CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDL 116
           G  G+   + R      C++C   +    L    +       +HP  F C+ C + L   
Sbjct: 1   GSSGSSGEKARGLGKYICQKCHAIIDEQPLIFKNDP------YHPDHFNCANCGKEL-TA 53

Query: 117 MYFHYKGNVYCLRDYATM 134
                KG +YCL  +  M
Sbjct: 54  DARELKGELYCLPCHDKM 71

>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 79

 Score = 37.1 bits (86), Expect = 3e-04
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 129 RDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
            + A  L    C  C  +I   +  + +N  +H  HF C  C K +T
Sbjct: 7   GEKARGLGKYICQKCHAII-DEQPLIFKNDPYHPDHFNCANCGKELT 52

>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 81

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 130 DYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT 175
           DY  +    RC +CD+ I   E   A  KT+H   F C  C     
Sbjct: 9   DYQRLYG-TRCFSCDQFI-EGEVVSALGKTYHPDCFVCAVCRLPFP 52

>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 81

 Score = 39.0 bits (91), Expect = 6e-05
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 71  GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGN-VYC 127
           G  C  C Q +  G++     K      +HP CFVC+ C           + G    C
Sbjct: 15  GTRCFSCDQFIE-GEVVSALGKT-----YHPDCFVCAVCRLPFPPGDRVTFNGKECMC 66

>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3 Length = 114

 Score = 40.8 bits (95), Expect = 2e-05
 Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 8/74 (10%)

Query: 73  TCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLM--YFHYKGNVYCLRD 130
           TC  C Q +         ++      WH  C  C  C   L ++    ++  G   C RD
Sbjct: 5   TCGGCQQNIGDRYFLKAIDQY-----WHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRD 59

Query: 131 YATMLDIPRCHACD 144
           Y   L     H   
Sbjct: 60  Y-LRLGGSGGHMGS 72

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	176
2cup_A	101	Skeletal muscle LIM-protein 1; four and half LIM d	99.95
2xqn_T	126	Testin, TESS; metal-binding protein, cytoskeleton,	99.94
2xjy_A	131	Rhombotin-2; oncoprotein, T-cell leukemia, proto-o	99.93
2jtn_A	182	LIM domain-binding protein 1, LIM/homeobox protein	99.92
1b8t_A	192	Protein (CRP1); LIM domain, muscle differentiation	99.92
2rgt_A	169	Fusion of LIM/homeobox protein LHX3, linker, INSU	99.92
1rut_X	188	Flinc4, fusion protein of LMO4 protein and LIM dom	99.91
1x63_A	82	Skeletal muscle LIM-protein 1; LIM domain, four an	99.76
2ehe_A	82	Four and A half LIM domains 3; FHL-3, skeletal mus	99.75
1x3h_A	80	Leupaxin; paxillin family, protein-protein interac	99.74
1m3v_A	122	FLIN4, fusion of the LIM interacting domain of LDB	99.74
2cuq_A	80	Four and A half LIM domains 3; structural genomics	99.73
1iml_A	76	CRIP, cysteine rich intestinal protein; metal-bind	99.72
1a7i_A	81	QCRP2 (LIM1); LIM domain containing proteins, meta	99.72
2dlo_A	81	Thyroid receptor-interacting protein 6; LIM domain	99.71
1g47_A	77	Pinch protein; LIM domain, Zn finger, cell adhesio	99.69
2egq_A	77	FHL1 protein; LIM domain, four and A half LIM doma	99.69
1x68_A	76	FHL5 protein; four-and-A-half LIM protein 5, zinc	99.68
1x4k_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	99.68
2dar_A	90	PDZ and LIM domain protein 5; enigma homolog prote	99.67
2dj7_A	80	Actin-binding LIM protein 3; LIM domain, Zn bindin	99.67
1wyh_A	72	SLIM 2, skeletal muscle LIM-protein 2; structural	99.67
2cu8_A	76	Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein	99.66
1x4l_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	99.66
2cur_A	69	Skeletal muscle LIM-protein 1; four and A half LIM	99.65
1x6a_A	81	LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc fi	99.65
1j2o_A	114	FLIN2, fusion of rhombotin-2 and LIM domain-bindin	99.64
2d8z_A	70	Four and A half LIM domains 2; skeletal muscle LIM	99.64
1b8t_A	192	Protein (CRP1); LIM domain, muscle differentiation	99.64
2d8y_A	91	Eplin protein; LIM domain, epithelial protein LOST	99.62
1x61_A	72	Thyroid receptor interacting protein 6; LIM domain	99.62
1nyp_A	66	Pinch protein; LIM domain, protein recognition, ce	99.61
3f6q_B	72	LIM and senescent cell antigen-like-containing dom	99.6
1x64_A	89	Alpha-actinin-2 associated LIM protein; LIM domain	99.59
2ehe_A	82	Four and A half LIM domains 3; FHL-3, skeletal mus	99.58
2egq_A	77	FHL1 protein; LIM domain, four and A half LIM doma	99.57
1x62_A	79	C-terminal LIM domain protein 1; PDZ and LIM domai	99.57
2cor_A	79	Pinch protein; LIM domain, particularly interestin	99.57
2d8x_A	70	Protein pinch; LIM domain, pinch protein, structur	99.56
2l3k_A	123	Rhombotin-2, linker, LIM domain-binding protein 1;	99.56
1x3h_A	80	Leupaxin; paxillin family, protein-protein interac	99.54
1x6a_A	81	LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc fi	99.53
2cuq_A	80	Four and A half LIM domains 3; structural genomics	99.53
2co8_A	82	NEDD9 interacting protein with calponin homology a	99.53
1rut_X	188	Flinc4, fusion protein of LMO4 protein and LIM dom	99.52
1v6g_A	81	Actin binding LIM protein 2; LIM domain, zinc bind	99.52
2l4z_A	123	DNA endonuclease RBBP8, LIM domain transcription L	99.51
1v6g_A	81	Actin binding LIM protein 2; LIM domain, zinc bind	99.51
2dlo_A	81	Thyroid receptor-interacting protein 6; LIM domain	99.5
1x63_A	82	Skeletal muscle LIM-protein 1; LIM domain, four an	99.5
2iyb_E	65	Testin, TESS, TES; LIM domain, SH3-binding, tumour	99.49
1wig_A	73	KIAA1808 protein; LIM domain, zinc finger, metal-b	99.48
2xqn_T	126	Testin, TESS; metal-binding protein, cytoskeleton,	99.42
2rgt_A	169	Fusion of LIM/homeobox protein LHX3, linker, INSU	99.41
2xjy_A	131	Rhombotin-2; oncoprotein, T-cell leukemia, proto-o	99.38
2jtn_A	182	LIM domain-binding protein 1, LIM/homeobox protein	99.25
1wig_A	73	KIAA1808 protein; LIM domain, zinc finger, metal-b	99.14
1nyp_A	66	Pinch protein; LIM domain, protein recognition, ce	99.14
2cu8_A	76	Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein	99.11
1x68_A	76	FHL5 protein; four-and-A-half LIM protein 5, zinc	99.1
1wyh_A	72	SLIM 2, skeletal muscle LIM-protein 2; structural	99.08
1x4l_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	99.08
1x4k_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	99.08
1iml_A	76	CRIP, cysteine rich intestinal protein; metal-bind	99.05
2dar_A	90	PDZ and LIM domain protein 5; enigma homolog prote	99.05
2iyb_E	65	Testin, TESS, TES; LIM domain, SH3-binding, tumour	99.05
2dj7_A	80	Actin-binding LIM protein 3; LIM domain, Zn bindin	99.04
1x61_A	72	Thyroid receptor interacting protein 6; LIM domain	99.04
2d8z_A	70	Four and A half LIM domains 2; skeletal muscle LIM	99.04
2cor_A	79	Pinch protein; LIM domain, particularly interestin	99.02
2co8_A	82	NEDD9 interacting protein with calponin homology a	99.02
2d8x_A	70	Protein pinch; LIM domain, pinch protein, structur	99.01
2cur_A	69	Skeletal muscle LIM-protein 1; four and A half LIM	99.01
3f6q_B	72	LIM and senescent cell antigen-like-containing dom	99.0
1a7i_A	81	QCRP2 (LIM1); LIM domain containing proteins, meta	98.99
2l4z_A	123	DNA endonuclease RBBP8, LIM domain transcription L	98.96
2d8y_A	91	Eplin protein; LIM domain, epithelial protein LOST	98.96
2l3k_A	123	Rhombotin-2, linker, LIM domain-binding protein 1;	98.96
1j2o_A	114	FLIN2, fusion of rhombotin-2 and LIM domain-bindin	98.94
1g47_A	77	Pinch protein; LIM domain, Zn finger, cell adhesio	98.93
1x64_A	89	Alpha-actinin-2 associated LIM protein; LIM domain	98.9
1x62_A	79	C-terminal LIM domain protein 1; PDZ and LIM domai	98.89
1m3v_A	122	FLIN4, fusion of the LIM interacting domain of LDB	98.87
2cup_A	101	Skeletal muscle LIM-protein 1; four and half LIM d	98.84
1zfo_A	31	LAsp-1; LIM domain, zinc-finger, metal-binding pro	98.04
1zfo_A	31	LAsp-1; LIM domain, zinc-finger, metal-binding pro	97.97
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	83.89
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	82.47
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	82.28
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	81.69

>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3

Probab=99.95  E-value=7.5e-28  Score=161.91  Aligned_cols=95  Identities=18%  Similarity=0.461  Sum_probs=85.9

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccccccccccC-
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVN-  150 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C~~~I~~~-  150 (176)
                      .+|.+|+++|..++.++.+.    ++.||++||+|..|+++|.+..|+.+++++||+.||.++|+ ++|..|+++|.++ 
T Consensus         6 ~~C~~C~~~I~~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~-~~C~~C~~~I~~~~   80 (101)
T 2cup_A            6 SGCVECRKPIGADSKEVHYK----NRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDS-PKCKGCFKAIVAGD   80 (101)
T ss_dssp             CBCSSSCCBCCSSSCEEEET----TEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCC-CBCSSSCCBCCSSS
T ss_pred             CcCcccCCcccCCceEEEEC----ccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcC-CccccCCCccccCC
Confidence            48999999998544555665    88999999999999999988889999999999999999999 9999999999854 


Q ss_pred             ceEEeCCCccccCCeecccCC
Q psy15163        151 EYTLAENKTFHVKHFCCYECD  171 (176)
Q Consensus       151 ~~~~a~~~~~H~~CF~C~~C~  171 (176)
                      .++.|+++.||++||+|..|+
T Consensus        81 ~~~~a~~~~~H~~CF~C~~C~  101 (101)
T 2cup_A           81 QNVEYKGTVWHKDCFSGPSSG  101 (101)
T ss_dssp             CEEESSSCEEETTTCCCTTCC
T ss_pred             eEEEeCCcchHHhCCCCCCCC
Confidence            467899999999999999996

>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}

Probab=99.94  E-value=4.2e-27  Score=164.33  Aligned_cols=99  Identities=23%  Similarity=0.506  Sum_probs=90.0

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccccccccccC-
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVN-  150 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C~~~I~~~-  150 (176)
                      ++|++|+++|..++.+ .+.    ++.||++||+|..|+++|.+..|+.++|++||+.||.++|+ ++|..|+++|.++ 
T Consensus         4 ~~C~~C~~~I~~~~~~-~a~----~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~-~~C~~C~~~I~~~~   77 (126)
T 2xqn_T            4 PRCAGCDELIFSNEYT-QAE----NQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA-VVCQGCHNAIDPEV   77 (126)
T ss_dssp             CBBTTTSSBCCSSCEE-EET----TEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC-CBCTTTCSBCCTTS
T ss_pred             CCCccCCCEeCCceEE-eeC----CCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC-ccCcccCCcCCcCc
Confidence            4899999999976654 555    88999999999999999998899999999999999999999 9999999999864 


Q ss_pred             ceEEeCCCccc--cCCeecccCCcccCC
Q psy15163        151 EYTLAENKTFH--VKHFCCYECDKIITQ  176 (176)
Q Consensus       151 ~~~~a~~~~~H--~~CF~C~~C~~~l~~  176 (176)
                      .++.|+++.||  ++||+|..|+++|.+
T Consensus        78 ~~~~a~~~~~H~~~~CF~C~~C~~~l~~  105 (126)
T 2xqn_T           78 QRVTYNNFSWHASTECFLCSCCSKCLIG  105 (126)
T ss_dssp             CEEEETTEEEESSTTTSBCTTTCCBCTT
T ss_pred             eEEECCCCEeeCCCCCcCcCCCCCccCC
Confidence            46789999999  999999999999863

>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A

Probab=99.93  E-value=1.9e-26  Score=162.02  Aligned_cols=98  Identities=27%  Similarity=0.582  Sum_probs=87.6

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccC--CCceeeeCCcccCHhHHhhCCCcc--ccccccccc
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLV--DLMYFHYKGNVYCLRDYATMLDIP--RCHACDELI  147 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~g~~yC~~~y~~~~~~~--~C~~C~~~I  147 (176)
                      .+|+.|+++|... .++.++    ++.||++||+|..|+.+|.  +..|+.++|++||+.||.++|+ +  +|..|+++|
T Consensus         3 ~~C~~C~~~I~~~-~~~~a~----~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~-~~~~C~~C~~~I   76 (131)
T 2xjy_A            3 LTCGGCQQNIGDR-YFLKAI----DQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG-QDGLCASCDKRI   76 (131)
T ss_dssp             CBBTTTCCBCCSS-EEEEET----TEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHC-CCEECTTTCCEE
T ss_pred             ccCcCCCCEeCCc-EEEEEC----CCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCC-CccChhhcCCcc
Confidence            4899999999954 455665    8899999999999999996  3689999999999999999999 8  999999999


Q ss_pred             ccCc-eEEeCCCccccCCeecccCCcccC
Q psy15163        148 FVNE-YTLAENKTFHVKHFCCYECDKIIT  175 (176)
Q Consensus       148 ~~~~-~~~a~~~~~H~~CF~C~~C~~~l~  175 (176)
                      .+.+ ++.|+++.||++||+|..|+++|.
T Consensus        77 ~~~e~~~~a~~~~~H~~CF~C~~C~~~L~  105 (131)
T 2xjy_A           77 RAYEMTMRVKDKVYHLECFKCAACQKHFC  105 (131)
T ss_dssp             CTTSEEEEETTEEEEGGGCBCTTTCCBCC
T ss_pred             CccceeEeeCCceECccCcccCCCCCCCC
Confidence            8644 678999999999999999999983

>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}

Probab=99.92  E-value=2.9e-25  Score=164.23  Aligned_cols=100  Identities=24%  Similarity=0.572  Sum_probs=88.2

Q ss_pred             CCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccccccccc
Q psy15163         69 RSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIF  148 (176)
Q Consensus        69 ~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C~~~I~  148 (176)
                      ....+|..|+++|... .++.+.    ++.||++||+|..|+++|.+.. |.++|++||+.||.++|+ ++|..|+++|.
T Consensus        58 ~~~~~C~~C~~~I~~~-~~~~a~----~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~-~kC~~C~~~I~  130 (182)
T 2jtn_A           58 PEIPMCAGCDQHILDR-FILKAL----DRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFG-TKCAACQLGIP  130 (182)
T ss_dssp             CSCCBCBTSSSBCCCS-EEEEET----TEEECSSTTSCTTTCCCCSSCC-EEETTEEECHHHHHHTTS-CCCTTTCCCCC
T ss_pred             CCCCcCccCCCCccCc-eeEEec----CCeEccccCccCCCCCccCCCc-eeECCEeeecCccccccc-cccccCCCccC
Confidence            3456999999999954 455665    8899999999999999998865 579999999999999999 99999999998


Q ss_pred             cCc-eEEeCCCccccCCeecccCCcccC
Q psy15163        149 VNE-YTLAENKTFHVKHFCCYECDKIIT  175 (176)
Q Consensus       149 ~~~-~~~a~~~~~H~~CF~C~~C~~~l~  175 (176)
                      +.+ ++.|+++.||++||+|..|+++|.
T Consensus       131 ~~~~v~~a~~~~~H~~CF~C~~C~~~L~  158 (182)
T 2jtn_A          131 PTQVVRRAQDFVYHLHCFACVVCKRQLA  158 (182)
T ss_dssp             SSCCCCEETTEECCTTTCCCTTTCCCCC
T ss_pred             CCceEEecCCCCEEeCCCcCCCCCCCCC
Confidence            765 457999999999999999999985

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A

Probab=99.92  E-value=1.3e-25  Score=167.40  Aligned_cols=99  Identities=25%  Similarity=0.610  Sum_probs=89.4

Q ss_pred             CcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCccc-----------
Q psy15163         71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPR-----------  139 (176)
Q Consensus        71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~-----------  139 (176)
                      ..+|..|+++|..++.+ .++    ++.||++||+|..|+++|.+..|+.+++++||+.||.++|+ ++           
T Consensus         7 ~~~C~~C~~~I~~~~~v-~a~----g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~-~~c~~c~~~~g~~   80 (192)
T 1b8t_A            7 GKKCGVCQKAVYFAEEV-QCE----GSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG-PKGKGKGMGAGTL   80 (192)
T ss_dssp             CEECTTTCCEECSSCCE-EET----TEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHS-CCCCCCCCCCCCC
T ss_pred             CCcCccCCCeecceeEE-EeC----CceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcC-ccccccccccccE
Confidence            35899999999877766 454    88999999999999999998889999999999999999987 65           


Q ss_pred             -------------------------------------ccccccccccCceEEeCCCccccCCeecccCCcccC
Q psy15163        140 -------------------------------------CHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT  175 (176)
Q Consensus       140 -------------------------------------C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~  175 (176)
                                                           |..|+++|.+++++.++++.||++||+|..|+++|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~  153 (192)
T 1b8t_A           81 STDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLE  153 (192)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCC
T ss_pred             ecCCCcccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCC
Confidence                                                 789999998777778999999999999999999986

>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A

Probab=99.92  E-value=1.5e-25  Score=163.86  Aligned_cols=98  Identities=24%  Similarity=0.564  Sum_probs=86.7

Q ss_pred             CcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccccccccccC
Q psy15163         71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVN  150 (176)
Q Consensus        71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C~~~I~~~  150 (176)
                      ...|..|+++|...+ ++.++    ++.||++||+|..|+.+|.+.. +.++|++||+.||.++|+ ++|..|+++|.+.
T Consensus         6 ~~~C~~C~~~I~~~~-~~~a~----~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~-~~C~~C~~~I~~~   78 (169)
T 2rgt_A            6 IPMCAGCDQHILDRF-ILKAL----DRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFG-TKCAACQLGIPPT   78 (169)
T ss_dssp             -CBBSSSSSBCCSSS-CEECS----SCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHS-CBCTTTCCBCCTT
T ss_pred             CCccccCCCccCCcE-EEEEC----CcEEccccCccCCCCCcCCCCC-cccCCeeeeccccccccc-ccccccccccCCC
Confidence            358999999999544 44565    8899999999999999998865 589999999999999999 9999999999876


Q ss_pred             ce-EEeCCCccccCCeecccCCcccC
Q psy15163        151 EY-TLAENKTFHVKHFCCYECDKIIT  175 (176)
Q Consensus       151 ~~-~~a~~~~~H~~CF~C~~C~~~l~  175 (176)
                      ++ +.|+++.||++||+|..|+++|.
T Consensus        79 ~~v~~a~~~~~H~~CF~C~~C~~~L~  104 (169)
T 2rgt_A           79 QVVRRAQDFVYHLHCFACVVCKRQLA  104 (169)
T ss_dssp             SEEEEETTEEEEGGGCBCTTTCCBCC
T ss_pred             cEEEEcCCceEeeCCCcCCCCCCCCC
Confidence            54 57999999999999999999985

>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B

Probab=99.91  E-value=2.2e-25  Score=165.66  Aligned_cols=98  Identities=29%  Similarity=0.724  Sum_probs=87.8

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCC--CceeeeCCcccCHhHHhhCCCcc--ccccccccc
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVD--LMYFHYKGNVYCLRDYATMLDIP--RCHACDELI  147 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~g~~yC~~~y~~~~~~~--~C~~C~~~I  147 (176)
                      ..|..|+++|.. ..++.++    ++.||++||+|..|+.+|..  ..|+.+++++||+.||.++|+ +  +|..|+++|
T Consensus         6 ~~C~~C~~~I~~-~~~~~a~----~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~-~~~~C~~C~~~I   79 (188)
T 1rut_X            6 KRCAGCGGKIAD-RFLLYAM----DSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG-NSGACSACGQSI   79 (188)
T ss_dssp             CBBTTTCCBCCC-SEEEEET----TEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS-CCEECTTTCCEE
T ss_pred             CcCccCCCEeCC-ceeEEec----CcEecccCcccCCCCcccccCCceEEEeCCccccccccccccc-cCCccccCCCcc
Confidence            489999999994 4455665    88999999999999999974  689999999999999999999 8  799999999


Q ss_pred             ccCc-eEEeCCCccccCCeecccCCcccC
Q psy15163        148 FVNE-YTLAENKTFHVKHFCCYECDKIIT  175 (176)
Q Consensus       148 ~~~~-~~~a~~~~~H~~CF~C~~C~~~l~  175 (176)
                      .+.+ ++.|+++.||++||+|..|+++|.
T Consensus        80 ~~~e~~i~a~~~~~H~~CF~C~~C~~~L~  108 (188)
T 1rut_X           80 PASELVMRAQGNVYHLKCFTCSTCRNRLV  108 (188)
T ss_dssp             CTTSEEEEETTEEECGGGCBCTTTCCBCC
T ss_pred             ccCcEEEEcCCCEEeCCCCeECCCCCCCC
Confidence            8654 567999999999999999999984

>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.76  E-value=8.9e-19  Score=113.03  Aligned_cols=80  Identities=26%  Similarity=0.628  Sum_probs=71.8

Q ss_pred             CCCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHh
Q psy15163         53 GNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA  132 (176)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~  132 (176)
                      ++.++|.+|+.....+    +|.+|+++|.+++.++.+.    ++.||++||+|..|+++|.+..|+..++++||+.||.
T Consensus         1 ~~~~yC~~cy~~~~~~----~C~~C~~~I~~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~   72 (82)
T 1x63_A            1 GSSGSSGKCTTREDSP----KCKGCFKAIVAGDQNVEYK----GTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHE   72 (82)
T ss_dssp             CCSCCCCCCCSCCCSC----BCSSSCCBCCSSSCEEECS----SCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHH
T ss_pred             CCCcCchhHHccccCC----cCccCCcccccCceEEEEC----ccccccccCchhhCCCccCCCccEeeCCEEECHHHHH
Confidence            4568999999987665    9999999999877777776    8899999999999999998888999999999999999


Q ss_pred             hCCCccccc
Q psy15163        133 TMLDIPRCH  141 (176)
Q Consensus       133 ~~~~~~~C~  141 (176)
                      ++|+ ++|.
T Consensus        73 ~~f~-~~~~   80 (82)
T 1x63_A           73 TKFA-SGPS   80 (82)
T ss_dssp             HHTS-CCCS
T ss_pred             HHhC-CCCC
Confidence            9999 8874

>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=3.6e-19  Score=114.90  Aligned_cols=81  Identities=22%  Similarity=0.516  Sum_probs=72.0

Q ss_pred             CCCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHh
Q psy15163         53 GNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA  132 (176)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~  132 (176)
                      ++.+||..|+..+..+    +|..|+++|.+++.++.+.    ++.||++||+|..|+++|.+..|+..++++||+.||.
T Consensus         1 ~g~~yC~~~y~~~~~~----~C~~C~~~I~~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~   72 (82)
T 2ehe_A            1 GSSGSSGPCYDNTFAN----TCAECQQLIGHDSRELFYE----DRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYC   72 (82)
T ss_dssp             CCCCCCCCCCCCCCSC----BCTTTCCBCCSSCCBCCCS----SCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSS
T ss_pred             CCceechhHhCcccCC----cCccCCCccccCcEEEEeC----CccccccCCeecCCCCccCCCccEeeCCEEECHHHHh
Confidence            3568999999988776    9999999999656666765    8899999999999999999889999999999999999


Q ss_pred             hCCCcccccc
Q psy15163        133 TMLDIPRCHA  142 (176)
Q Consensus       133 ~~~~~~~C~~  142 (176)
                      ++|+ ++|+.
T Consensus        73 ~~~~-~~C~~   81 (82)
T 2ehe_A           73 SAFS-SGPSS   81 (82)
T ss_dssp             CCGG-GSSCC
T ss_pred             hhcC-CCCCC
Confidence            9999 99863

>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.74  E-value=1.3e-18  Score=111.80  Aligned_cols=79  Identities=23%  Similarity=0.533  Sum_probs=69.8

Q ss_pred             CCCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHh
Q psy15163         53 GNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA  132 (176)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~  132 (176)
                      ++.++|..|+..+..+    +|++|+++|.. +.+ .+.    ++.||++||+|..|+++|.+..|+..++++||+.||.
T Consensus         1 gg~~yC~~~y~~~~~~----~C~~C~~~I~~-~~v-~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~   70 (80)
T 1x3h_A            1 GSSGSSGKDFLAMFSP----KCGGCNRPVLE-NYL-SAM----DTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYH   70 (80)
T ss_dssp             CCCCCCCCCCCCCCSC----BCTTTCCBCCS-SCE-EET----TEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHH
T ss_pred             CCCccchhHHhhhcCC----ccccCCCeecc-eeE-EEC----CCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHH
Confidence            4568999999988765    99999999994 555 554    8899999999999999998888999999999999999


Q ss_pred             hCCCcccccc
Q psy15163        133 TMLDIPRCHA  142 (176)
Q Consensus       133 ~~~~~~~C~~  142 (176)
                      ++|+ ++|+.
T Consensus        71 ~~f~-~~C~~   79 (80)
T 1x3h_A           71 HRRG-SGPSS   79 (80)
T ss_dssp             HHHS-SSCCC
T ss_pred             HHcC-CCCCC
Confidence            9999 99964

>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=99.74  E-value=3e-19  Score=123.78  Aligned_cols=79  Identities=22%  Similarity=0.496  Sum_probs=68.2

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccC--CCceeeeCCcccCHhHHhhCCCcc--ccccccccc
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLV--DLMYFHYKGNVYCLRDYATMLDIP--RCHACDELI  147 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~g~~yC~~~y~~~~~~~--~C~~C~~~I  147 (176)
                      .+|++|+++|...+.+ .+.    ++.||++||+|..|+.+|.  +..|+.+++++||+.||.++|+ +  +|+.|+++|
T Consensus         6 ~~C~~C~~~I~~~~~~-~a~----~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~-~~~~C~~C~~~I   79 (122)
T 1m3v_A            6 KRCAGCGGKIADRFLL-YAM----DSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG-NSGAGGSGGHMG   79 (122)
T ss_dssp             CCBSSSSSCCCSSCCE-EET----TEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHC-CCCSSSCSSCCS
T ss_pred             CCCcccCCEeCCcEEE-EEC----CceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcC-CCCccccCCCCc
Confidence            4899999999966544 555    8899999999999999997  3579999999999999999999 9  999999999


Q ss_pred             ccCceEEeCC
Q psy15163        148 FVNEYTLAEN  157 (176)
Q Consensus       148 ~~~~~~~a~~  157 (176)
                      .+++++ +++
T Consensus        80 ~~~~~~-~~g   88 (122)
T 1m3v_A           80 SGGDVM-VVG   88 (122)
T ss_dssp             CCEESS-SSS
T ss_pred             CchheE-EcC
Confidence            876655 444

>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.73  E-value=2.4e-18  Score=110.48  Aligned_cols=79  Identities=20%  Similarity=0.576  Sum_probs=69.5

Q ss_pred             CCCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHh
Q psy15163         53 GNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA  132 (176)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~  132 (176)
                      ++.++|.+|+..+..+    +|..|+++|.. +.+ .+.    ++.||++||+|..|+++|.+..|+..++++||+.||.
T Consensus         1 gg~~yC~~cy~~~~~~----~C~~C~~~I~~-~~v-~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~   70 (80)
T 2cuq_A            1 GSSGSSGPCYENKFAP----RCARCSKTLTQ-GGV-TYR----DQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFG   70 (80)
T ss_dssp             CCCCSCCCCCCCCSSC----CCTTTCCCCCS-CCE-ESS----SSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHH
T ss_pred             CCcEEcHHHHccccCC----cCCCCCCEecC-cEE-EEC----CchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHH
Confidence            4568999999987765    99999999984 544 555    8899999999999999998888999999999999999


Q ss_pred             hCCCcccccc
Q psy15163        133 TMLDIPRCHA  142 (176)
Q Consensus       133 ~~~~~~~C~~  142 (176)
                      ++|+ ++|+.
T Consensus        71 ~~f~-~~c~s   79 (80)
T 2cuq_A           71 ELFA-SGPSS   79 (80)
T ss_dssp             HHTT-CSTTC
T ss_pred             HHcC-CCCCC
Confidence            9999 99863

>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3

Probab=99.72  E-value=2.7e-18  Score=109.23  Aligned_cols=69  Identities=23%  Similarity=0.486  Sum_probs=62.9

Q ss_pred             ccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCH-hHHhhCCCccccccccccc
Q psy15163         73 TCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCL-RDYATMLDIPRCHACDELI  147 (176)
Q Consensus        73 ~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~-~~y~~~~~~~~C~~C~~~I  147 (176)
                      +|.+|+++|..++.+ .+.    ++.||++||+|..|+++|.+..|+..++++||+ .||.++|+ ++|..|++.+
T Consensus         2 ~C~~C~~~I~~~~~v-~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~-~~C~~C~~~~   71 (76)
T 1iml_A            2 KCPKCDKEVYFAERV-TSL----GKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG-PKGFGRGGAE   71 (76)
T ss_dssp             BCTTTSSBCCGGGEE-EET----TEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS-CCCSSCCCSS
T ss_pred             cCCCCCCEEECceEE-EEC----CccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC-ccCCCcCCce
Confidence            799999999977775 454    889999999999999999888899999999999 69999999 9999999766

>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A

Probab=99.72  E-value=2.4e-18  Score=110.79  Aligned_cols=71  Identities=23%  Similarity=0.477  Sum_probs=55.2

Q ss_pred             CcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCccccccccccc
Q psy15163         71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELI  147 (176)
Q Consensus        71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C~~~I  147 (176)
                      ..+|..|+++|..++.+ .+.    ++.||++||+|..|+++|.+..|+.+++++||+.||.++|+ ++|.+|++..
T Consensus         7 ~~~C~~C~~~I~~~~~~-~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~-~~c~gcg~g~   77 (81)
T 1a7i_A            7 GNKCGACGRTVYHAEEV-QCD----GRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYG-PKGYGYGQGA   77 (81)
T ss_dssp             -CBCSSSCCBCSSTTEE-EET----TEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC-----------
T ss_pred             CCcCcCcCccccCceeE-EeC----CcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhC-CcccccCCcc
Confidence            35899999999877765 554    88999999999999999988889999999999999999999 9999999765

>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.71  E-value=1.1e-17  Score=107.57  Aligned_cols=78  Identities=19%  Similarity=0.459  Sum_probs=66.3

Q ss_pred             CCCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeee-CCcccCHhHH
Q psy15163         53 GNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHY-KGNVYCLRDY  131 (176)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~-~g~~yC~~~y  131 (176)
                      ++.++|.+|+. ...    .+|++|+++|. ++ ++.+.    ++.||++||+|..|+++|.+..|+.. ++++||+.||
T Consensus         2 ~g~~yC~~~y~-~~~----~~C~~C~~~I~-~~-~~~a~----~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy   70 (81)
T 2dlo_A            2 SSGSSGEGCYV-ATL----EKCATCSQPIL-DR-ILRAM----GKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDF   70 (81)
T ss_dssp             CCCCCCCCCCC-SSC----CBCTTTCCBCC-SC-CEEET----TEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHH
T ss_pred             cCCEECHHHhh-cCC----CccccCCCeec-ce-eEEEC----CccccHHhcCcccCCCccCCCeeEECCCCEEECHHHH
Confidence            35689999998 443    49999999998 44 45665    88999999999999999998778776 7899999999


Q ss_pred             hhCCCcccccc
Q psy15163        132 ATMLDIPRCHA  142 (176)
Q Consensus       132 ~~~~~~~~C~~  142 (176)
                      .++|+ ++|+.
T Consensus        71 ~~~f~-~~C~~   80 (81)
T 2dlo_A           71 HRKFA-SGPSS   80 (81)
T ss_dssp             HHHTT-SSSCC
T ss_pred             HHHhc-CcCCC
Confidence            99999 99964

>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.69  E-value=1.4e-17  Score=106.02  Aligned_cols=66  Identities=26%  Similarity=0.713  Sum_probs=58.7

Q ss_pred             CcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCccccc
Q psy15163         71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCH  141 (176)
Q Consensus        71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~  141 (176)
                      ..+|.+|+++|.+.+.++.+.    ++.||++||+|..|+++|.+..|+..+|++||+.||.++|+ ++|+
T Consensus        11 ~~~C~~C~~~I~~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~-~~C~   76 (77)
T 1g47_A           11 SATCERCKGGFAPAEKIVNSN----GELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA-PCWI   76 (77)
T ss_dssp             CCBCSSSCCBCCSTTTCEEET----TEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCC-CC--
T ss_pred             CCCchhcCCccCCCceEEEeC----ccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhh-cccC
Confidence            359999999998767777776    88999999999999999988889999999999999999999 9986

>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=4.2e-17  Score=103.86  Aligned_cols=73  Identities=25%  Similarity=0.566  Sum_probs=63.6

Q ss_pred             CCCcccCCCCCCccCCCCCcccccccccccC---CCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHh
Q psy15163         53 GNGVTHGPCGNKLTQPRSGKTCKQCGQEVRS---GDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLR  129 (176)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~---~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~  129 (176)
                      ++.++|..|+..+.++    +|++|+++|.+   ...++.+.    ++.||++||+|..|+++|.+..|+..++++||+.
T Consensus         1 g~~~yC~~cy~~~~~~----~C~~C~~~I~~~g~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~   72 (77)
T 2egq_A            1 GSSGSSGDCYKNFVAK----KCAGCKNPITGFGKGSSVVAYE----GQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPD   72 (77)
T ss_dssp             CCSSCCTTCCCSCCCC----CCSSSCCCCCCCSSCCCEEEET----TEEEETTTCBCSSSCCBCTTSCCCEETTEECCHH
T ss_pred             CCCeEchhHhchhhCc----cCcccCCcccCCCCCceeEEEC----cceeCcccCEehhcCCCCCCCccEeECCEEEChH
Confidence            4678999999988765    99999999995   33455665    8899999999999999999888999999999999


Q ss_pred             HHhh
Q psy15163        130 DYAT  133 (176)
Q Consensus       130 ~y~~  133 (176)
                      ||.+
T Consensus        73 cy~~   76 (77)
T 2egq_A           73 CAKK   76 (77)
T ss_dssp             HHHH
T ss_pred             Hhcc
Confidence            9975

>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.68  E-value=1.6e-17  Score=105.60  Aligned_cols=68  Identities=19%  Similarity=0.509  Sum_probs=60.5

Q ss_pred             cccccccccccC--CCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccccc
Q psy15163         72 KTCKQCGQEVRS--GDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACD  144 (176)
Q Consensus        72 ~~C~~C~~~i~~--~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C~  144 (176)
                      .+|..|+++|..  ...++.++    ++.||++||+|..|+++|.+..|+..++++||+.||.++|+ ++|+.++
T Consensus         6 ~~C~~C~~~I~~~g~~~~~~a~----~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~-~~C~~~s   75 (76)
T 1x68_A            6 SGCVACSKPISGLTGAKFICFQ----DSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDT-DISGPSS   75 (76)
T ss_dssp             CCCTTTCCCCCTTTTCCEEEET----TEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCC-CSSSSSC
T ss_pred             CCCccCCCcccCCCCceeEEEC----CcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhC-CcCCCCC
Confidence            389999999994  33445665    88999999999999999998889999999999999999999 9999876

>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.68  E-value=3e-17  Score=103.21  Aligned_cols=66  Identities=17%  Similarity=0.526  Sum_probs=60.2

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccc
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA  142 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~  142 (176)
                      .+|..|+++|.+.+.++.+.    ++.||++||+|..|+++|.+..|+..++++||+.||.++|+ ++|+.
T Consensus         6 ~~C~~C~~~I~~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~-~~C~~   71 (72)
T 1x4k_A            6 SGCQECKKTIMPGTRKMEYK----GSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHA-SGPSS   71 (72)
T ss_dssp             CCBSSSCCCCCSSSCEEEET----TEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTS-SCCCC
T ss_pred             CCCccCCCcccCCceEEEEC----cCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhC-CCCCC
Confidence            38999999999776666776    88999999999999999988889999999999999999999 99963

>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.67  E-value=7.1e-17  Score=105.91  Aligned_cols=65  Identities=25%  Similarity=0.602  Sum_probs=58.0

Q ss_pred             CcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccc
Q psy15163         71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA  142 (176)
Q Consensus        71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~  142 (176)
                      ..+|..|+++|. ++.+ .++    ++.||++||+|..|+++|.+..|+..++++||+.||.++|+ ++|+.
T Consensus        25 ~~~C~~C~~~I~-~~~v-~a~----~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~-~~c~s   89 (90)
T 2dar_A           25 TPMCAHCNQVIR-GPFL-VAL----GKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFA-SGPSS   89 (90)
T ss_dssp             CCBBSSSCCBCC-SCEE-EET----TEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTS-CCCCC
T ss_pred             CCCCccCCCEec-ceEE-EEC----CccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcC-CCCCC
Confidence            359999999997 6655 454    88999999999999999998889999999999999999999 99963

>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.67  E-value=4.4e-17  Score=104.62  Aligned_cols=65  Identities=28%  Similarity=0.678  Sum_probs=57.9

Q ss_pred             CcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccc
Q psy15163         71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA  142 (176)
Q Consensus        71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~  142 (176)
                      ..+|..|+++|..++.+. ++    ++.||++||+|..|+++|.+ .|+.+++++||+.||.++|+ ++|++
T Consensus        15 ~~~C~~C~~~I~~~~~v~-a~----~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg-~~C~~   79 (80)
T 2dj7_A           15 PSHCAGCKEEIKHGQSLL-AL----DKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFG-SGPSS   79 (80)
T ss_dssp             CSCCTTTCCCCSSSCCEE-ET----TEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTT-CCSTT
T ss_pred             CCCCcCcCCeeCCCeEEE-EC----CcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcC-CCCCC
Confidence            458999999998777664 44    88999999999999999986 69999999999999999999 99974

>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.67  E-value=3.9e-17  Score=102.64  Aligned_cols=66  Identities=27%  Similarity=0.636  Sum_probs=59.6

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccc
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA  142 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~  142 (176)
                      .+|..|+++|.+++.++.+.    ++.||++||+|..|+++|.+..|+..++++||+.||.++|+ ++|+.
T Consensus         6 ~~C~~C~~~I~~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~-~~C~~   71 (72)
T 1wyh_A            6 SGCSACGETVMPGSRKLEYG----GQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFA-SGPSS   71 (72)
T ss_dssp             CBCSSSCCBCCSSSCEECST----TCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTS-CCCCC
T ss_pred             CCCccCCCccccCccEEEEC----ccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHcc-CcCCC
Confidence            48999999999765666765    88999999999999999998889999999999999999999 99963

>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.66  E-value=5.9e-17  Score=102.98  Aligned_cols=65  Identities=22%  Similarity=0.459  Sum_probs=58.9

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCH-hHHhhCCCcccccc
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCL-RDYATMLDIPRCHA  142 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~-~~y~~~~~~~~C~~  142 (176)
                      .+|..|+++|..++.+. ++    ++.||++||+|..|+++|.+..|+.+++++||+ .||.++|+ ++|.+
T Consensus        10 ~~C~~C~~~I~~~~~v~-a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~-~kc~g   75 (76)
T 2cu8_A           10 SKCPKCDKTVYFAEKVS-SL----GKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFG-SGPSS   75 (76)
T ss_dssp             CBCTTTCCBCCTTTEEE-ET----TEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSC-SSCSC
T ss_pred             CCCcCCCCEeECCeEEE-EC----CeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcc-cccCC
Confidence            48999999999777764 54    889999999999999999988899999999999 79999999 99864

>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.66  E-value=1.1e-16  Score=100.73  Aligned_cols=64  Identities=22%  Similarity=0.545  Sum_probs=57.0

Q ss_pred             cccccccccccC--CCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccc
Q psy15163         72 KTCKQCGQEVRS--GDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRC  140 (176)
Q Consensus        72 ~~C~~C~~~i~~--~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C  140 (176)
                      .+|..|+++|..  .+.++.++    ++.||++||+|..|+++|.+..|+.+++++||+.||.++|+ |++
T Consensus         6 ~~C~~C~~~I~~~~~~~~~~a~----~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~-p~~   71 (72)
T 1x4l_A            6 SGCAGCTNPISGLGGTKYISFE----ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISG-PSS   71 (72)
T ss_dssp             CSBTTTTBCCCCSSSCSCEECS----SCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCC-SSC
T ss_pred             CCCcCCCccccCCCCcceEEEC----CcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccC-CCC
Confidence            489999999995  34555665    88999999999999999998889999999999999999999 775

>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.65  E-value=6.5e-17  Score=100.88  Aligned_cols=64  Identities=22%  Similarity=0.596  Sum_probs=57.5

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccc
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA  142 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~  142 (176)
                      .+|..|+++|. ++.+ .+.    ++.||++||+|..|+++|.+..|+..++++||+.||.++|+ ++|++
T Consensus         6 ~~C~~C~~~I~-~~~~-~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~-~~C~g   69 (69)
T 2cur_A            6 SGCVKCNKAIT-SGGI-TYQ----DQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS-GPSSG   69 (69)
T ss_dssp             CCCSSSCCCCC-TTCE-EET----TEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT-CSCCC
T ss_pred             CCCcccCCEeC-cceE-EEC----ccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhc-CCCCC
Confidence            48999999998 4555 554    88999999999999999998889999999999999999999 99974

>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.65  E-value=7.2e-17  Score=103.77  Aligned_cols=78  Identities=18%  Similarity=0.406  Sum_probs=66.0

Q ss_pred             CCCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccC-CCcee-eeCCcccCHhH
Q psy15163         53 GNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLV-DLMYF-HYKGNVYCLRD  130 (176)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~-~~~g~~yC~~~  130 (176)
                      +++.||..|+..+.++    +|..|+++|. ++.+ .+.    ++.||++||+|..|+++|. +..|+ ..++++||+.|
T Consensus         1 g~~~yC~~~y~~~~~~----~C~~C~~~I~-~~~~-~a~----~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c   70 (81)
T 1x6a_A            1 GSSGSSGKDYWGKFGE----FCHGCSLLMT-GPFM-VAG----EFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKC   70 (81)
T ss_dssp             CCCCCCCCCSSCCSSC----BCTTTCCBCC-SCCB-CCT----TCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHH
T ss_pred             CCCccchhHHhhhcCC----cCccCCCCcC-ceEE-EEC----CceeccccCCccCCCCccCCCCcEEEeeCCEEECHHH
Confidence            3568999999988776    9999999999 5554 554    8899999999999999996 45677 48999999999


Q ss_pred             HhhCCCccccc
Q psy15163        131 YATMLDIPRCH  141 (176)
Q Consensus       131 y~~~~~~~~C~  141 (176)
                      |.++|+ +.|+
T Consensus        71 ~~~~~~-~~~s   80 (81)
T 1x6a_A           71 HNEVVS-GPSS   80 (81)
T ss_dssp             HHHHHC-TTSC
T ss_pred             HHHHhc-CCCC
Confidence            999998 7765

>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=99.64  E-value=1.6e-16  Score=108.67  Aligned_cols=67  Identities=24%  Similarity=0.491  Sum_probs=59.3

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCC--CceeeeCCcccCHhHHhhCCCcccccccc
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVD--LMYFHYKGNVYCLRDYATMLDIPRCHACD  144 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~g~~yC~~~y~~~~~~~~C~~C~  144 (176)
                      .+|++|+++|... .++.++    ++.||++||+|..|+++|..  ..|+.+++++||+.||.++|+ ++|..|.
T Consensus         4 ~~C~~C~~~I~~~-~~~~a~----~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~-~~c~~c~   72 (114)
T 1j2o_A            4 LTCGGCQQNIGDR-YFLKAI----DQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG-SGGHMGS   72 (114)
T ss_dssp             BCBSSSCSCBCSS-EEEECS----SSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHT-SCCSSCB
T ss_pred             CCCcCCCCeeCCc-EEEEEC----chhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhC-cccCcCC
Confidence            4899999999954 455665    88999999999999999974  589999999999999999999 9988876

>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.64  E-value=1.2e-16  Score=99.85  Aligned_cols=64  Identities=22%  Similarity=0.553  Sum_probs=57.3

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccc
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA  142 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~  142 (176)
                      .+|..|+++|. ++.+ .+.    ++.||++||+|..|+++|.+..|+..++++||+.||.++|+ ++|+.
T Consensus         6 ~~C~~C~~~I~-~~~~-~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~-~~c~~   69 (70)
T 2d8z_A            6 SGCVQCKKPIT-TGGV-TYR----EQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYA-SGPSS   69 (70)
T ss_dssp             CBCSSSCCBCC-SSEE-ESS----SSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTC-CCCTT
T ss_pred             CCCcccCCeec-cceE-EEC----ccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhc-cccCC
Confidence            48999999998 4554 554    88999999999999999998899999999999999999999 99963

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A

Probab=99.64  E-value=3.3e-17  Score=121.84  Aligned_cols=71  Identities=25%  Similarity=0.607  Sum_probs=65.0

Q ss_pred             CcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCccccccccccc
Q psy15163         71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELI  147 (176)
Q Consensus        71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C~~~I  147 (176)
                      ..+|..|+++|.+++.+. +.    ++.||++||+|..|+++|.+..|+..++++||+.||.++|+ ++|.+|+++|
T Consensus       115 ~~~C~~C~~~I~~~~~v~-a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~-~kc~~C~~~~  185 (192)
T 1b8t_A          115 SDGCPRCGQAVYAAEKVI-GA----GKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFG-PKGFGFGQGA  185 (192)
T ss_dssp             CEECTTTSCEECSSSCEE-ET----TEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTC-CCCCCCCCCC
T ss_pred             CCcCCCCCCEecCcEEEe-cC----CCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcC-CcCCCCCCcc
Confidence            357999999999777775 54    88999999999999999988889999999999999999999 9999999997

>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.62  E-value=2.6e-16  Score=103.44  Aligned_cols=67  Identities=24%  Similarity=0.548  Sum_probs=59.9

Q ss_pred             CcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCccccccc
Q psy15163         71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHAC  143 (176)
Q Consensus        71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C  143 (176)
                      ...|..|+++|...+.+ .++    ++.||++||+|..|+++|....|+..++++||+.||.++|+ ++|..+
T Consensus        15 ~~~C~~C~~~I~~~~~v-~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~-~kc~~~   81 (91)
T 2d8y_A           15 RETCVECQKTVYPMERL-LAN----QQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFK-SKGNYD   81 (91)
T ss_dssp             SCBCTTTCCBCCTTSEE-ECS----SSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSC-CCSCCC
T ss_pred             CCcCccCCCccCCceeE-EEC----CCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhC-CCcCcc
Confidence            35899999999977766 554    88999999999999999988889999999999999999999 999843

>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.62  E-value=2e-16  Score=99.41  Aligned_cols=66  Identities=27%  Similarity=0.609  Sum_probs=57.5

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCccccccc
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHAC  143 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C  143 (176)
                      .+|.+|+++|...+.++.+.    ++.||++||+|..|+++|.+..|+.+++++||+.||.++|.  +|..+
T Consensus         6 ~~C~~C~~~I~~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~--~~~~~   71 (72)
T 1x61_A            6 SGCGGCGEDVVGDGAGVVAL----DRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE--SGPSS   71 (72)
T ss_dssp             CCCSSSCSCCCSSSCCEECS----SSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH--TCSSC
T ss_pred             CCCccCCCccCCCceEEEEC----CCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc--cCCCC
Confidence            48999999999766566666    88999999999999999988889999999999999998875  56544

>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B

Probab=99.61  E-value=2.3e-16  Score=97.49  Aligned_cols=61  Identities=23%  Similarity=0.630  Sum_probs=54.7

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCccc
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPR  139 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~  139 (176)
                      .+|.+|+++|. ++.+ .+.    ++.||++||+|..|+++|.+..|+..++++||+.||.++|+ ++
T Consensus         6 ~~C~~C~~~I~-~~~~-~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~-~k   66 (66)
T 1nyp_A            6 PICGACRRPIE-GRVV-NAM----GKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFG-DV   66 (66)
T ss_dssp             CEETTTTEECC-SCEE-CCT----TSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCS-CC
T ss_pred             CCCcccCCEec-ceEE-EEC----ccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhC-CC
Confidence            48999999999 6654 554    88999999999999999998899999999999999999998 64

>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B

Probab=99.60  E-value=6.3e-16  Score=96.90  Aligned_cols=62  Identities=26%  Similarity=0.747  Sum_probs=56.3

Q ss_pred             CcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCC
Q psy15163         71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD  136 (176)
Q Consensus        71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~  136 (176)
                      ..+|.+|+++|...+.++.+.    ++.||++||+|..|+++|.+..|+..+|++||+.||.++|+
T Consensus        11 ~~~C~~C~~~i~~~e~~~~~~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~   72 (72)
T 3f6q_B           11 SATCERCKGGFAPAEKIVNSN----GELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA   72 (72)
T ss_dssp             TCBCTTTCCBCCTTCEEEEET----TEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred             CccchhcCccccCCceEEEeC----cCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence            349999999999888877776    88999999999999999988789999999999999998875

>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=99.59  E-value=7.6e-16  Score=100.75  Aligned_cols=63  Identities=27%  Similarity=0.639  Sum_probs=56.3

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCccccc
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCH  141 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~  141 (176)
                      .+|..|++.|.. +. +.++    ++.||++||+|..|+++|.+..|+..++++||+.||.++|+ +++.
T Consensus        26 ~~C~~C~~~I~~-~~-~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~-p~~~   88 (89)
T 1x64_A           26 PLCDKCGSGIVG-AV-VKAR----DKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTS-GPSS   88 (89)
T ss_dssp             CBCTTTCCBCCS-CC-EESS----SCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSS-SCCC
T ss_pred             CCcccCCCEecc-cE-EEEC----CceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhC-CCCC
Confidence            489999999994 54 4555    88999999999999999988889999999999999999999 8875

>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=4e-16  Score=100.50  Aligned_cols=54  Identities=20%  Similarity=0.415  Sum_probs=49.2

Q ss_pred             CCcccCHhHHhhCCCcccccccccccc-cCceEEeCCCccccCCeecccCCcccCC
Q psy15163        122 KGNVYCLRDYATMLDIPRCHACDELIF-VNEYTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       122 ~g~~yC~~~y~~~~~~~~C~~C~~~I~-~~~~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      +|++||+.||.++|+ ++|..|+++|. ++.++.|+++.||++||+|..|+++|.+
T Consensus         1 ~g~~yC~~~y~~~~~-~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~   55 (82)
T 2ehe_A            1 GSSGSSGPCYDNTFA-NTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLAD   55 (82)
T ss_dssp             CCCCCCCCCCCCCCS-CBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSS
T ss_pred             CCceechhHhCcccC-CcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCC
Confidence            588999999999999 99999999998 3567779999999999999999999864

>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=7.6e-16  Score=97.96  Aligned_cols=54  Identities=17%  Similarity=0.343  Sum_probs=49.0

Q ss_pred             CCcccCHhHHhhCCCccccccccccccc----CceEEeCCCccccCCeecccCCcccCC
Q psy15163        122 KGNVYCLRDYATMLDIPRCHACDELIFV----NEYTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       122 ~g~~yC~~~y~~~~~~~~C~~C~~~I~~----~~~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      ++++||+.||.++|+ ++|..|+++|.+    .+++.|+++.||++||+|..|+++|.+
T Consensus         1 g~~~yC~~cy~~~~~-~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~   58 (77)
T 2egq_A            1 GSSGSSGDCYKNFVA-KKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLAN   58 (77)
T ss_dssp             CCSSCCTTCCCSCCC-CCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTT
T ss_pred             CCCeEchhHhchhhC-ccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCC
Confidence            368999999999999 999999999984    367889999999999999999999863

>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.57  E-value=3.9e-16  Score=99.90  Aligned_cols=63  Identities=22%  Similarity=0.550  Sum_probs=55.8

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCccccc
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCH  141 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~  141 (176)
                      .+|..|+++|.. +. +.++    ++.||++||+|..|+++|.+..|+..++++||+.||.++|+ |++.
T Consensus        16 ~~C~~C~~~I~~-~~-~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~-p~g~   78 (79)
T 1x62_A           16 PMCDKCGTGIVG-VF-VKLR----DRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVS-GPSS   78 (79)
T ss_dssp             CCCSSSCCCCCS-SC-EECS----SCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHS-SCCC
T ss_pred             CccccCCCCccC-cE-EEEC----cceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhC-CCCC
Confidence            489999999994 54 4555    88999999999999999988789999999999999999999 8764

>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.57  E-value=2.7e-15  Score=96.00  Aligned_cols=64  Identities=22%  Similarity=0.386  Sum_probs=54.7

Q ss_pred             CCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCccccc
Q psy15163         70 SGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCH  141 (176)
Q Consensus        70 ~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~  141 (176)
                      ...+|..|+++|. ++.+ .+.    ++.||++||+|..|+++|.+. ++.+++++||+.||.++|+ |++.
T Consensus        14 ~~~~C~~C~~~I~-~~~v-~a~----~~~~H~~CF~C~~C~~~L~~~-~f~~~g~~yC~~cy~~~f~-p~~s   77 (79)
T 2cor_A           14 GKYICQKCHAIID-EQPL-IFK----NDPYHPDHFNCANCGKELTAD-ARELKGELYCLPCHDKMGV-SGPS   77 (79)
T ss_dssp             CCCBCTTTCCBCC-SCCC-CCS----SSCCCTTTSBCSSSCCBCCTT-CEEETTEEECHHHHHTTSC-CSSC
T ss_pred             CCCCCccCCCEec-ceEE-EEC----cceeCCCCCEeCCCCCccCCC-CEeECCEEeCHHHHHHhCC-CCCC
Confidence            3459999999999 5555 454    889999999999999999876 4699999999999999999 7654

>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.56  E-value=2e-15  Score=94.26  Aligned_cols=62  Identities=27%  Similarity=0.627  Sum_probs=54.6

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccc
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRC  140 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C  140 (176)
                      .+|..|+++|. ++.+ .+.    ++.||++||+|..|+++|.+..|+.+++++||+.||.++|+ ++.
T Consensus         6 ~~C~~C~~~I~-~~~~-~a~----~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~-~~~   67 (70)
T 2d8x_A            6 SGCHQCGEFII-GRVI-KAM----NNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKA-SGP   67 (70)
T ss_dssp             SBCSSSCCBCC-SCCE-EET----TEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHC-CCS
T ss_pred             CcCccCCCEec-ceEE-EEC----cccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcC-CCC
Confidence            48999999998 5554 554    88999999999999999998889999999999999999988 554

>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.54  E-value=1.8e-15  Score=96.87  Aligned_cols=53  Identities=21%  Similarity=0.542  Sum_probs=48.6

Q ss_pred             CCcccCHhHHhhCCCcccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163        122 KGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       122 ~g~~yC~~~y~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      +|++||+.||.++++ ++|..|+++|.+ +++.|+++.||++||+|..|+++|.+
T Consensus         1 gg~~yC~~~y~~~~~-~~C~~C~~~I~~-~~v~a~~~~~H~~CF~C~~C~~~L~~   53 (80)
T 1x3h_A            1 GSSGSSGKDFLAMFS-PKCGGCNRPVLE-NYLSAMDTVWHPECFVCGDCFTSFST   53 (80)
T ss_dssp             CCCCCCCCCCCCCCS-CBCTTTCCBCCS-SCEEETTEEECTTTCBCSSSCCBSCS
T ss_pred             CCCccchhHHhhhcC-CccccCCCeecc-eeEEECCCeEecCcCChhhCCCCCCC
Confidence            478999999999999 999999999976 56789999999999999999999863

>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.53  E-value=1.7e-15  Score=97.25  Aligned_cols=51  Identities=25%  Similarity=0.541  Sum_probs=47.4

Q ss_pred             CcccCHhHHhhCCCcccccccccccccCceEEeCCCccccCCeecccCCcccC
Q psy15163        123 GNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT  175 (176)
Q Consensus       123 g~~yC~~~y~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~  175 (176)
                      +.+||+.||.++|+ ++|..|+++|. +.++.|+++.||++||+|..|+++|.
T Consensus         2 ~~~yC~~~y~~~~~-~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~   52 (81)
T 1x6a_A            2 SSGSSGKDYWGKFG-EFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIE   52 (81)
T ss_dssp             CCCCCCCCSSCCSS-CBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCC
T ss_pred             CCccchhHHhhhcC-CcCccCCCCcC-ceEEEECCceeccccCCccCCCCccC
Confidence            67999999999999 99999999997 56777999999999999999999985

>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.53  E-value=2.1e-15  Score=96.62  Aligned_cols=53  Identities=15%  Similarity=0.348  Sum_probs=48.6

Q ss_pred             CCcccCHhHHhhCCCcccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163        122 KGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       122 ~g~~yC~~~y~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      +|++||+.||.++++ ++|..|+++|.+ +++.|+++.||++||+|..|+++|.+
T Consensus         1 gg~~yC~~cy~~~~~-~~C~~C~~~I~~-~~v~a~~~~~H~~CF~C~~C~~~L~~   53 (80)
T 2cuq_A            1 GSSGSSGPCYENKFA-PRCARCSKTLTQ-GGVTYRDQPWHRECLVCTGCQTPLAG   53 (80)
T ss_dssp             CCCCSCCCCCCCCSS-CCCTTTCCCCCS-CCEESSSSEECTTTCBCSSSCCBCTT
T ss_pred             CCcEEcHHHHccccC-CcCCCCCCEecC-cEEEECCchhhhhhCCcccCCCcCCC
Confidence            478999999999999 999999999976 47789999999999999999999863

>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.53  E-value=1.8e-15  Score=97.54  Aligned_cols=61  Identities=26%  Similarity=0.562  Sum_probs=53.9

Q ss_pred             CcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCcee--eeCCcccCHhHHhhCCC
Q psy15163         71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYF--HYKGNVYCLRDYATMLD  136 (176)
Q Consensus        71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~--~~~g~~yC~~~y~~~~~  136 (176)
                      ..+|.+|+++|+..+.+. ++    ++.||++||+|..|+++|....|+  ..++++||+.||.++|+
T Consensus        15 ~~~C~~C~~~I~~~e~v~-a~----~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~   77 (82)
T 2co8_A           15 GDLCALCGEHLYVLERLC-VN----GHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDS   77 (82)
T ss_dssp             SCBCSSSCCBCCTTTBCC-BT----TBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCC
T ss_pred             CCCCcccCCCcccceEEE-EC----CCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhc
Confidence            358999999998777775 44    889999999999999999888887  47999999999999987

>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B

Probab=99.52  E-value=2.6e-15  Score=111.26  Aligned_cols=107  Identities=20%  Similarity=0.325  Sum_probs=78.3

Q ss_pred             CCCCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccC-CCceeeeCCcccCHhH
Q psy15163         52 SGNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLV-DLMYFHYKGNVYCLRD  130 (176)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~g~~yC~~~  130 (176)
                      .++.+||..|+..+..+  ..+|..|+++|...+.++.+.    ++.||++||+|..|+++|. +..|+..++++||+.|
T Consensus        52 ~~g~~yC~~cy~~~~~~--~~~C~~C~~~I~~~e~~i~a~----~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c  125 (188)
T 1rut_X           52 KSGMILCRNDYIRLFGN--SGACSACGQSIPASELVMRAQ----GNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD  125 (188)
T ss_dssp             ETTEEECHHHHHHHHSC--CEECTTTCCEECTTSEEEEET----TEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGG
T ss_pred             eCCcccccccccccccc--CCccccCCCccccCcEEEEcC----CCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHH
Confidence            34567788777665442  126999999999777777776    8899999999999999995 5679999999999999


Q ss_pred             HhhCCCcccccccccc-----------cccCceEEeCCCccccCCeec
Q psy15163        131 YATMLDIPRCHACDEL-----------IFVNEYTLAENKTFHVKHFCC  167 (176)
Q Consensus       131 y~~~~~~~~C~~C~~~-----------I~~~~~~~a~~~~~H~~CF~C  167 (176)
                      |.+++. ++|...+..           +.++  ...++..||++..+.
T Consensus       126 ~~~~~~-~~~~~~g~~~~~~~~~~~v~vvge--p~l~g~~~~~~~~r~  170 (188)
T 1rut_X          126 RPTALI-NGHLNSGGSGGSGGSGGDVMVVGE--PTLMGGEFGDEDERL  170 (188)
T ss_dssp             CCTTTC-----------------CCCEECCC--CEETTCCCCCTTEEE
T ss_pred             HHHHhc-ccccccCCCCcccccCCcccccCC--CcccCCCCCCCCCce
Confidence            999999 999888762           2122  246788999999885

>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.52  E-value=3.7e-15  Score=95.71  Aligned_cols=51  Identities=29%  Similarity=0.492  Sum_probs=47.2

Q ss_pred             CcccCHhHHhhCCCcccccccccccccCceEEeCCCccccCCeecccCCcccC
Q psy15163        123 GNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT  175 (176)
Q Consensus       123 g~~yC~~~y~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~  175 (176)
                      +.+||+.||.++|+ ++|..|+++|.+ +++.|+++.||++||+|..|+++|.
T Consensus         2 ~~~yC~~dy~~~~~-~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~   52 (81)
T 1v6g_A            2 SSGSSGLDYQRLYG-TRCFSCDQFIEG-EVVSALGKTYHPDCFVCAVCRLPFP   52 (81)
T ss_dssp             CCCCCCSCGGGSCC-CBCTTTCCBCCS-CCEEETTEEECTTTSSCSSSCCCCC
T ss_pred             CCCcchHHHHhHhC-CcCccccCEecc-ceEEECCceeCccCCccccCCCCCC
Confidence            46899999999999 999999999974 6778999999999999999999986

>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}

Probab=99.51  E-value=9.5e-15  Score=101.10  Aligned_cols=61  Identities=26%  Similarity=0.679  Sum_probs=53.0

Q ss_pred             CcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccC--CCceeeeCCcccCHhHHhhCCC
Q psy15163         71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLV--DLMYFHYKGNVYCLRDYATMLD  136 (176)
Q Consensus        71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~g~~yC~~~y~~~~~  136 (176)
                      ..+|++|+++|...+ ++.++    ++.||++||+|..|+++|.  +..|+.+++++||+.||.++|+
T Consensus        61 ~~~C~~C~~~I~~~~-~v~a~----~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg  123 (123)
T 2l4z_A           61 WKRCAGCGGKIADRF-LLYAM----DSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG  123 (123)
T ss_dssp             CSBBSSSSSBCCSSS-EEEET----TEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred             CCcCcCCCCCcCCcE-EEEeC----CcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence            459999999999554 44565    8899999999999999996  4689999999999999999885

>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.51  E-value=1.2e-14  Score=93.30  Aligned_cols=74  Identities=22%  Similarity=0.444  Sum_probs=60.9

Q ss_pred             CCCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCC-cccCHhHH
Q psy15163         53 GNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKG-NVYCLRDY  131 (176)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g-~~yC~~~y  131 (176)
                      ++++||..++..+.++    +|+.|+++|. ++.+ .+.    ++.||++||+|..|+++|....++..++ .+||..||
T Consensus         1 ~~~~yC~~dy~~~~~~----~C~~C~~~I~-~~~v-~a~----~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~   70 (81)
T 1v6g_A            1 GSSGSSGLDYQRLYGT----RCFSCDQFIE-GEVV-SAL----GKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCS   70 (81)
T ss_dssp             CCCCCCCSCGGGSCCC----BCTTTCCBCC-SCCE-EET----TEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHH
T ss_pred             CCCCcchHHHHhHhCC----cCccccCEec-cceE-EEC----CceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhh
Confidence            3568999999988876    9999999998 5544 555    8899999999999999997666666555 57999999


Q ss_pred             hhCCC
Q psy15163        132 ATMLD  136 (176)
Q Consensus       132 ~~~~~  136 (176)
                      .+.+.
T Consensus        71 ~~~~~   75 (81)
T 1v6g_A           71 LPVSV   75 (81)
T ss_dssp             SCCSS
T ss_pred             cccCC
Confidence            77665

>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.50  E-value=5.3e-15  Score=94.98  Aligned_cols=52  Identities=19%  Similarity=0.344  Sum_probs=47.3

Q ss_pred             CCcccCHhHHhhCCCcccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163        122 KGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       122 ~g~~yC~~~y~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      +|++||+.||. +++ ++|..|+++|.+ .++.|+++.||++||+|..|+++|.+
T Consensus         2 ~g~~yC~~~y~-~~~-~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~   53 (81)
T 2dlo_A            2 SSGSSGEGCYV-ATL-EKCATCSQPILD-RILRAMGKAYHPGCFTCVVCHRGLDG   53 (81)
T ss_dssp             CCCCCCCCCCC-SSC-CBCTTTCCBCCS-CCEEETTEEECTTTCBCSSSCCBCTT
T ss_pred             cCCEECHHHhh-cCC-CccccCCCeecc-eeEEECCccccHHhcCcccCCCccCC
Confidence            68999999998 788 999999999975 57789999999999999999999863

>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.50  E-value=6.4e-15  Score=94.73  Aligned_cols=54  Identities=17%  Similarity=0.361  Sum_probs=48.5

Q ss_pred             CCcccCHhHHhhCCCcccccccccccccC-ceEEeCCCccccCCeecccCCcccCC
Q psy15163        122 KGNVYCLRDYATMLDIPRCHACDELIFVN-EYTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       122 ~g~~yC~~~y~~~~~~~~C~~C~~~I~~~-~~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      ++.+||+.||.++++ ++|..|+++|... .++.|+++.||++||+|..|+++|.+
T Consensus         1 ~~~~yC~~cy~~~~~-~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~   55 (82)
T 1x63_A            1 GSSGSSGKCTTREDS-PKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGT   55 (82)
T ss_dssp             CCSCCCCCCCSCCCS-CBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTT
T ss_pred             CCCcCchhHHccccC-CcCccCCcccccCceEEEECccccccccCchhhCCCccCC
Confidence            368999999999999 9999999999854 45789999999999999999999863

>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}

Probab=99.49  E-value=2e-14  Score=88.45  Aligned_cols=59  Identities=25%  Similarity=0.676  Sum_probs=51.4

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccC--ccCcccccCccccCCCceeeeCCcccC-HhHHhhC
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWH--PQCFVCSTCDELLVDLMYFHYKGNVYC-LRDYATM  134 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~g~~yC-~~~y~~~  134 (176)
                      .+|.+|+++|.+++.++.+.    ++.||  ++||+|..|+++|.+..|+.++|++|| ..||.++
T Consensus         3 ~~C~~C~~~I~~~~~~v~a~----~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~   64 (65)
T 2iyb_E            3 VVCQGCHNAIDPEVQRVTYN----NFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM   64 (65)
T ss_dssp             EECTTTSSEECTTSCEEEET----TEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred             CCCcCCCCeeccCceEEEEC----CCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence            38999999999754455665    88999  999999999999999899999999999 8888654

>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.48  E-value=1.6e-14  Score=90.98  Aligned_cols=59  Identities=12%  Similarity=0.392  Sum_probs=51.9

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCcccccCccccC-CCceeeeCCcccCHhHHhhCCC
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLV-DLMYFHYKGNVYCLRDYATMLD  136 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~g~~yC~~~y~~~~~  136 (176)
                      ..|++|+++|.. +.+ .++    ++.||++||+|..|+++|. +..|+..++++||+.||.++++
T Consensus         6 ~~C~~C~~~I~~-~~v-~a~----~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~   65 (73)
T 1wig_A            6 SGCDSCEKYITG-RVL-EAG----EKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART   65 (73)
T ss_dssp             CSCSSSCCCCSS-CCB-CCS----SCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSS
T ss_pred             CCcccCCCEecC-eeE-EeC----CCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhc
Confidence            489999999984 544 554    8899999999999999998 7789999999999999998876

>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}

Probab=99.42  E-value=3.8e-14  Score=98.32  Aligned_cols=76  Identities=22%  Similarity=0.557  Sum_probs=66.0

Q ss_pred             CCCCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccC--ccCcccccCccccCCCceeeeCCcccCHh
Q psy15163         52 SGNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWH--PQCFVCSTCDELLVDLMYFHYKGNVYCLR  129 (176)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~  129 (176)
                      .++.++|..|+.++.++    +|..|+++|.+++.++.+.    ++.||  ++||+|..|+++|.+..|+..++++||+.
T Consensus        48 ~~g~~yC~~cy~~~~~~----~C~~C~~~I~~~~~~~~a~----~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~  119 (126)
T 2xqn_T           48 VNDKPVCKPCYVKNHAV----VCQGCHNAIDPEVQRVTYN----NFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSV  119 (126)
T ss_dssp             ETTEEEEHHHHHHHSCC----BCTTTCSBCCTTSCEEEET----TEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSH
T ss_pred             ECCEEechHHhCcCcCc----cCcccCCcCCcCceEEECC----CCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchH
Confidence            45667888888877665    9999999999766666776    88999  99999999999999888999999999998


Q ss_pred             HHhhCC
Q psy15163        130 DYATML  135 (176)
Q Consensus       130 ~y~~~~  135 (176)
                      +|.++|
T Consensus       120 ~~~~~f  125 (126)
T 2xqn_T          120 ECKKRM  125 (126)
T ss_dssp             HHHHSC
T ss_pred             Hhhhhc
Confidence            888776

>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A

Probab=99.41  E-value=3.5e-14  Score=103.36  Aligned_cols=105  Identities=16%  Similarity=0.234  Sum_probs=75.5

Q ss_pred             CCCCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccC-CCceee-eCCcccCHh
Q psy15163         52 SGNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLV-DLMYFH-YKGNVYCLR  129 (176)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~-~~g~~yC~~  129 (176)
                      .++.+||..|+..+.++    +|..|+++|..++.++.+.    ++.||++||+|..|+++|. +..|+. .++++||+.
T Consensus        50 ~~g~~yC~~~y~~~f~~----~C~~C~~~I~~~~~v~~a~----~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~  121 (169)
T 2rgt_A           50 RGESVYCKDDFFKRFGT----KCAACQLGIPPTQVVRRAQ----DFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKA  121 (169)
T ss_dssp             SSSCEECHHHHHHHHSC----BCTTTCCBCCTTSEEEEET----TEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHH
T ss_pred             cCCeeeecccccccccc----cccccccccCCCcEEEEcC----CceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHH
Confidence            45678888888877665    9999999999877777776    8899999999999999996 456654 688999999


Q ss_pred             HHhhCCCcccccccccccccCceEEeCCCccccCCee
Q psy15163        130 DYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFC  166 (176)
Q Consensus       130 ~y~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~  166 (176)
                      ||.+.+. ..+.. .+.-..+..+.+.+..+|...|.
T Consensus       122 c~~~~~~-~~~~~-~~~~rprt~~~~~q~~~l~~~f~  156 (169)
T 2rgt_A          122 DYETAKQ-GGSGG-SGGSGGGTPMVAASPERHDGGLQ  156 (169)
T ss_dssp             HHHHHHH-CC-----------EEEECCCCEECCSSCC
T ss_pred             HHHHHhh-ccCCC-CCCcCCCCcccHHHHHHHHHHHh
Confidence            9988775 44322 11111223445666667776664

>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A

Probab=99.38  E-value=2.5e-14  Score=99.83  Aligned_cols=79  Identities=16%  Similarity=0.386  Sum_probs=64.7

Q ss_pred             CCCCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCcccc-CCCceeeeCCcccCHhH
Q psy15163         52 SGNGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELL-VDLMYFHYKGNVYCLRD  130 (176)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l-~~~~~~~~~g~~yC~~~  130 (176)
                      .++.++|..|+..+..+  ..+|..|+++|...+.++.+.    ++.||++||+|..|+++| .+..|+..++++||+.|
T Consensus        49 ~~g~~yC~~~y~~~~~~--~~~C~~C~~~I~~~e~~~~a~----~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c  122 (131)
T 2xjy_A           49 KLGRKLCRRDYLRLFGQ--DGLCASCDKRIRAYEMTMRVK----DKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD  122 (131)
T ss_dssp             ETTEEECHHHHHHHHCC--CEECTTTCCEECTTSEEEEET----TEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGG
T ss_pred             ECCEEeecCchhhhCCC--ccChhhcCCccCccceeEeeC----CceECccCcccCCCCCCCCCCCEEEEECCEEEcHHH
Confidence            34567777777655432  127999999999777777776    889999999999999999 46779999999999999


Q ss_pred             HhhCCC
Q psy15163        131 YATMLD  136 (176)
Q Consensus       131 y~~~~~  136 (176)
                      |.++++
T Consensus       123 ~~~~~~  128 (131)
T 2xjy_A          123 IYEWTK  128 (131)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            988765

>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}

Probab=99.25  E-value=9.2e-13  Score=96.95  Aligned_cols=73  Identities=19%  Similarity=0.405  Sum_probs=57.0

Q ss_pred             CCcccCCCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCcccccCccccC-CCceee-eCCcccCHhHH
Q psy15163         54 NGVTHGPCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLV-DLMYFH-YKGNVYCLRDY  131 (176)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~-~~g~~yC~~~y  131 (176)
                      +.+||..|+..+..    ++|..|+++|...+.++.+.    ++.||++||+|..|+++|. +..|+. .++++||+.||
T Consensus       106 g~~yC~~~y~~~f~----~kC~~C~~~I~~~~~v~~a~----~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy  177 (182)
T 2jtn_A          106 ESVYCKDDFFKRFG----TKCAACQLGIPPTQVVRRAQ----DFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY  177 (182)
T ss_dssp             TEEECHHHHHHTTS----CCCTTTCCCCCSSCCCCEET----TEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHH
T ss_pred             CEeeecCccccccc----cccccCCCccCCCceEEecC----CCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHH
Confidence            34555555555444    49999999999777666665    8899999999999999997 456654 68999999999


Q ss_pred             hhC
Q psy15163        132 ATM  134 (176)
Q Consensus       132 ~~~  134 (176)
                      .+.
T Consensus       178 ~~~  180 (182)
T 2jtn_A          178 ETA  180 (182)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            764

>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.14  E-value=1.5e-11  Score=77.19  Aligned_cols=41  Identities=20%  Similarity=0.451  Sum_probs=36.7

Q ss_pred             hCCCcccccccccccccCceEEeCCCccccCCeecccCCcccC
Q psy15163        133 TMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT  175 (176)
Q Consensus       133 ~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~  175 (176)
                      .+|+ ++|..|+++|.+ .++.|+++.||++||+|..|+.+|.
T Consensus         2 s~~~-~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~   42 (73)
T 1wig_A            2 SSGS-SGCDSCEKYITG-RVLEAGEKHYHPSCALCVRCGQMFA   42 (73)
T ss_dssp             CCSC-CSCSSSCCCCSS-CCBCCSSCCBCTTTSCCSSSCCCCC
T ss_pred             CcCc-CCcccCCCEecC-eeEEeCCCCCCCCcCEeCCCCCCCC
Confidence            3567 999999999976 5677999999999999999999986

>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B

Probab=99.14  E-value=1.8e-11  Score=75.17  Aligned_cols=42  Identities=36%  Similarity=0.615  Sum_probs=37.0

Q ss_pred             hCCCcccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163        133 TMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       133 ~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      ++++ ++|..|+++|. ++++.|+++.||++||+|..|+++|.+
T Consensus         2 ~~~~-~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~   43 (66)
T 1nyp_A            2 SMGV-PICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLG   43 (66)
T ss_dssp             CCCC-CEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSS
T ss_pred             CcCC-CCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCC
Confidence            3566 89999999998 567889999999999999999999863

>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.11  E-value=3.8e-11  Score=75.81  Aligned_cols=42  Identities=24%  Similarity=0.547  Sum_probs=37.7

Q ss_pred             CCCcccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163        134 MLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       134 ~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      .+. ++|..|+++|..++++.|+++.||++||+|..|+++|.+
T Consensus         7 ~~~-~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~   48 (76)
T 2cu8_A            7 GMA-SKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTP   48 (76)
T ss_dssp             CCC-CBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCT
T ss_pred             CCC-CCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCC
Confidence            456 899999999986778889999999999999999999863

>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.10  E-value=3.3e-11  Score=76.10  Aligned_cols=43  Identities=19%  Similarity=0.424  Sum_probs=37.7

Q ss_pred             hCCCccccccccccccc---CceEEeCCCccccCCeecccCCcccCC
Q psy15163        133 TMLDIPRCHACDELIFV---NEYTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       133 ~~~~~~~C~~C~~~I~~---~~~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      ++|+ ++|..|+++|.+   .+++.|+++.||++||+|..|+++|.+
T Consensus         2 ~~~~-~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~   47 (76)
T 1x68_A            2 SSGS-SGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVG   47 (76)
T ss_dssp             TTCC-CCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSS
T ss_pred             CccC-CCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCC
Confidence            4677 999999999974   367889999999999999999999863

>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.08  E-value=5.3e-11  Score=74.24  Aligned_cols=43  Identities=21%  Similarity=0.458  Sum_probs=37.8

Q ss_pred             hCCCccccccccccccc-CceEEeCCCccccCCeecccCCcccCC
Q psy15163        133 TMLDIPRCHACDELIFV-NEYTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       133 ~~~~~~~C~~C~~~I~~-~~~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      ++++ ++|..|+++|.. +.++.|+++.||++||+|..|+++|.+
T Consensus         2 ~~~~-~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~   45 (72)
T 1wyh_A            2 SSGS-SGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGS   45 (72)
T ss_dssp             CCCC-CBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTT
T ss_pred             CccC-CCCccCCCccccCccEEEECccccCcccCeECCCCCcCCC
Confidence            4567 899999999986 367889999999999999999999863

>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.08  E-value=6.1e-11  Score=74.02  Aligned_cols=42  Identities=21%  Similarity=0.456  Sum_probs=36.6

Q ss_pred             CCCccccccccccccc---CceEEeCCCccccCCeecccCCcccCC
Q psy15163        134 MLDIPRCHACDELIFV---NEYTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       134 ~~~~~~C~~C~~~I~~---~~~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      .+. ++|..|+++|.+   +.++.|+++.||++||+|..|+++|.+
T Consensus         3 ~~~-~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~   47 (72)
T 1x4l_A            3 SGS-SGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVG   47 (72)
T ss_dssp             SCS-CSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTT
T ss_pred             CCC-CCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCC
Confidence            345 899999999985   367889999999999999999999863

>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.08  E-value=4.9e-11  Score=74.42  Aligned_cols=43  Identities=19%  Similarity=0.440  Sum_probs=37.9

Q ss_pred             hCCCcccccccccccccC-ceEEeCCCccccCCeecccCCcccCC
Q psy15163        133 TMLDIPRCHACDELIFVN-EYTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       133 ~~~~~~~C~~C~~~I~~~-~~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      ++|+ ++|..|+++|.+. .++.|+++.||++||+|..|+++|.+
T Consensus         2 ~~~~-~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~   45 (72)
T 1x4k_A            2 SSGS-SGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGT   45 (72)
T ss_dssp             CSCC-CCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCS
T ss_pred             CccC-CCCccCCCcccCCceEEEECcCeecccCCcccccCCccCC
Confidence            4677 9999999999865 47789999999999999999999863

>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3

Probab=99.05  E-value=6.8e-11  Score=74.63  Aligned_cols=39  Identities=28%  Similarity=0.683  Sum_probs=35.5

Q ss_pred             ccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163        138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      |+|..|+++|..++++.++++.||++||+|..|+++|.+
T Consensus         1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~   39 (76)
T 1iml_A            1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTS   39 (76)
T ss_dssp             CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCT
T ss_pred             CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCC
Confidence            689999999986778889999999999999999999864

>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.05  E-value=6.9e-11  Score=77.08  Aligned_cols=48  Identities=23%  Similarity=0.494  Sum_probs=40.1

Q ss_pred             CHhHHhhCCCcccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163        127 CLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       127 C~~~y~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      ....+...+. ++|..|+++|. ++++.|+++.||++||+|..|+++|.+
T Consensus        16 ~~~~~~~~~~-~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~   63 (90)
T 2dar_A           16 AEHIPAGKRT-PMCAHCNQVIR-GPFLVALGKSWHPEEFNCAHCKNTMAY   63 (90)
T ss_dssp             CEEECTTTCC-CBBSSSCCBCC-SCEEEETTEEECTTTCBCSSSCCBCSS
T ss_pred             cccCCCCCCC-CCCccCCCEec-ceEEEECCccccccCCccCCCCCCCCC
Confidence            3334556777 99999999996 567779999999999999999999863

>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}

Probab=99.05  E-value=6.9e-11  Score=72.40  Aligned_cols=41  Identities=22%  Similarity=0.412  Sum_probs=35.9

Q ss_pred             CCccccccccccccc-CceEEeCCCccc--cCCeecccCCcccCC
Q psy15163        135 LDIPRCHACDELIFV-NEYTLAENKTFH--VKHFCCYECDKIITQ  176 (176)
Q Consensus       135 ~~~~~C~~C~~~I~~-~~~~~a~~~~~H--~~CF~C~~C~~~l~~  176 (176)
                      |+ ++|..|+++|.+ +.++.|+++.||  ++||+|..|+++|.+
T Consensus         1 fa-~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~   44 (65)
T 2iyb_E            1 HA-VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIG   44 (65)
T ss_dssp             -C-EECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTT
T ss_pred             Cc-CCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCC
Confidence            45 899999999985 467889999999  999999999999863

>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.04  E-value=8.1e-11  Score=75.13  Aligned_cols=38  Identities=37%  Similarity=0.675  Sum_probs=35.4

Q ss_pred             ccccccccccccCceEEeCCCccccCCeecccCCcccC
Q psy15163        138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT  175 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~  175 (176)
                      ++|..|+++|..++++.|+++.||++||+|..|+.+|.
T Consensus        16 ~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~   53 (80)
T 2dj7_A           16 SHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILT   53 (80)
T ss_dssp             SCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCS
T ss_pred             CCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcC
Confidence            79999999998677888999999999999999999986

>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.04  E-value=1.2e-10  Score=72.72  Aligned_cols=41  Identities=24%  Similarity=0.507  Sum_probs=36.2

Q ss_pred             CCCcccccccccccccC-ceEEeCCCccccCCeecccCCcccC
Q psy15163        134 MLDIPRCHACDELIFVN-EYTLAENKTFHVKHFCCYECDKIIT  175 (176)
Q Consensus       134 ~~~~~~C~~C~~~I~~~-~~~~a~~~~~H~~CF~C~~C~~~l~  175 (176)
                      .++ ++|..|+++|.+. .++.|+++.||++||+|..|+++|.
T Consensus         3 ~~~-~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~   44 (72)
T 1x61_A            3 SGS-SGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLR   44 (72)
T ss_dssp             SCC-CCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCT
T ss_pred             CCC-CCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCC
Confidence            355 8999999999864 4778999999999999999999985

>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.04  E-value=1.2e-10  Score=72.30  Aligned_cols=41  Identities=20%  Similarity=0.415  Sum_probs=36.1

Q ss_pred             CCCcccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163        134 MLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       134 ~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      .++ ++|..|+++|.+ +.+.++++.||++||+|..|+++|.+
T Consensus         3 ~~~-~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~   43 (70)
T 2d8z_A            3 SGS-SGCVQCKKPITT-GGVTYREQPWHKECFVCTACRKQLSG   43 (70)
T ss_dssp             CCC-CBCSSSCCBCCS-SEEESSSSEEETTTSBCSSSCCBCTT
T ss_pred             CCC-CCCcccCCeecc-ceEEECccccCCCCCccCCCCCcCCc
Confidence            466 899999999975 46779999999999999999999863

>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.02  E-value=1.1e-10  Score=74.24  Aligned_cols=41  Identities=27%  Similarity=0.591  Sum_probs=35.7

Q ss_pred             CCCcccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163        134 MLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       134 ~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      .+. ++|..|+++|. ++++.|+++.||++||+|..|+.+|.+
T Consensus        13 ~~~-~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~   53 (79)
T 2cor_A           13 LGK-YICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTA   53 (79)
T ss_dssp             CCC-CBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCT
T ss_pred             cCC-CCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCC
Confidence            344 89999999997 456779999999999999999999863

>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.02  E-value=1.1e-10  Score=74.92  Aligned_cols=39  Identities=26%  Similarity=0.540  Sum_probs=35.5

Q ss_pred             ccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163        138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      ++|..|+++|...+++.++++.||++||+|..|+++|.+
T Consensus        16 ~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~   54 (82)
T 2co8_A           16 DLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWP   54 (82)
T ss_dssp             CBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCT
T ss_pred             CCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCC
Confidence            799999999987777779999999999999999999863

>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.01  E-value=1.5e-10  Score=71.81  Aligned_cols=38  Identities=29%  Similarity=0.685  Sum_probs=34.6

Q ss_pred             ccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163        138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      ++|..|+++|.+ +++.|+++.||++||+|..|+.+|.+
T Consensus         6 ~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~   43 (70)
T 2d8x_A            6 SGCHQCGEFIIG-RVIKAMNNSWHPECFRCDLCQEVLAD   43 (70)
T ss_dssp             SBCSSSCCBCCS-CCEEETTEEECTTTSBCSSSCCBCSS
T ss_pred             CcCccCCCEecc-eEEEECcccccccCCEeCCCCCcCCC
Confidence            899999999975 57789999999999999999999864

>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.01  E-value=1.5e-10  Score=71.62  Aligned_cols=40  Identities=20%  Similarity=0.476  Sum_probs=35.5

Q ss_pred             CCCcccccccccccccCceEEeCCCccccCCeecccCCcccC
Q psy15163        134 MLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT  175 (176)
Q Consensus       134 ~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~  175 (176)
                      .++ ++|..|+++|.+ +++.++++.||++||+|..|+++|.
T Consensus         3 ~~~-~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~   42 (69)
T 2cur_A            3 SGS-SGCVKCNKAITS-GGITYQDQPWHADCFVCVTCSKKLA   42 (69)
T ss_dssp             CCC-CCCSSSCCCCCT-TCEEETTEEECTTTTBCTTTCCBCT
T ss_pred             CCc-CCCcccCCEeCc-ceEEECccccccCcCEECCCCCCCC
Confidence            455 899999999975 4677999999999999999999985

>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B

Probab=99.00  E-value=9.9e-11  Score=72.83  Aligned_cols=42  Identities=17%  Similarity=0.389  Sum_probs=36.5

Q ss_pred             hCCCcccccccccccccCc-eEEeCCCccccCCeecccCCcccC
Q psy15163        133 TMLDIPRCHACDELIFVNE-YTLAENKTFHVKHFCCYECDKIIT  175 (176)
Q Consensus       133 ~~~~~~~C~~C~~~I~~~~-~~~a~~~~~H~~CF~C~~C~~~l~  175 (176)
                      ..+. ++|..|+++|.+.+ ++.++++.||++||+|..|+++|.
T Consensus         8 ~~~~-~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~   50 (72)
T 3f6q_B            8 GSAS-ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFP   50 (72)
T ss_dssp             CCTT-CBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCG
T ss_pred             CcCC-ccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCC
Confidence            3556 89999999998665 457999999999999999999985

>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A

Probab=98.99  E-value=1.7e-10  Score=73.62  Aligned_cols=39  Identities=26%  Similarity=0.636  Sum_probs=35.9

Q ss_pred             ccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163        138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      ++|..|+++|..++++.++++.||++||+|..|+++|.+
T Consensus         8 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~   46 (81)
T 1a7i_A            8 NKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDS   46 (81)
T ss_dssp             CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECS
T ss_pred             CcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCC
Confidence            899999999986778889999999999999999999863

>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}

Probab=98.96  E-value=2.7e-10  Score=78.59  Aligned_cols=42  Identities=19%  Similarity=0.350  Sum_probs=37.2

Q ss_pred             hCCCcccccccccccccCceEEeCCCccccCCeecccCCcccC
Q psy15163        133 TMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT  175 (176)
Q Consensus       133 ~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~  175 (176)
                      ..+. ++|..|+++|.+..++.|+++.||++||+|..|+++|.
T Consensus        58 ~~~~-~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~   99 (123)
T 2l4z_A           58 GLSW-KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLG   99 (123)
T ss_dssp             CSSC-SBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGG
T ss_pred             CccC-CcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCccc
Confidence            3445 89999999998776788999999999999999999984

>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=98.96  E-value=2.9e-10  Score=74.20  Aligned_cols=39  Identities=26%  Similarity=0.658  Sum_probs=36.0

Q ss_pred             ccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163        138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      ++|..|+++|.+.+++.++++.||++||+|..|+.+|.+
T Consensus        16 ~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~   54 (91)
T 2d8y_A           16 ETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSL   54 (91)
T ss_dssp             CBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCT
T ss_pred             CcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCC
Confidence            899999999987678889999999999999999999863

>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=98.94  E-value=4e-10  Score=76.61  Aligned_cols=38  Identities=18%  Similarity=0.343  Sum_probs=35.5

Q ss_pred             ccccccccccccCceEEeCCCccccCCeecccCCcccC
Q psy15163        138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT  175 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~  175 (176)
                      ++|..|+++|.+.+++.|+++.||++||+|..|+++|.
T Consensus         4 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~   41 (114)
T 1j2o_A            4 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLG   41 (114)
T ss_dssp             BCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCC
T ss_pred             CCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchh
Confidence            79999999998776788999999999999999999995

>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=98.93  E-value=3.4e-10  Score=71.46  Aligned_cols=41  Identities=15%  Similarity=0.432  Sum_probs=35.7

Q ss_pred             CCCccccccccccccc-CceEEeCCCccccCCeecccCCcccC
Q psy15163        134 MLDIPRCHACDELIFV-NEYTLAENKTFHVKHFCCYECDKIIT  175 (176)
Q Consensus       134 ~~~~~~C~~C~~~I~~-~~~~~a~~~~~H~~CF~C~~C~~~l~  175 (176)
                      .++ ++|..|+++|.+ +.++.++++.||++||+|..|+++|.
T Consensus         9 ~~~-~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~   50 (77)
T 1g47_A            9 LAS-ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFP   50 (77)
T ss_dssp             CCC-CBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCG
T ss_pred             CCC-CCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCC
Confidence            345 899999999974 45677999999999999999999986

>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=98.90  E-value=5.9e-10  Score=72.44  Aligned_cols=38  Identities=29%  Similarity=0.549  Sum_probs=34.5

Q ss_pred             ccccccccccccCceEEeCCCccccCCeecccCCcccCC
Q psy15163        138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      ++|..|+++|.+ .++.|+++.||++||+|..|+++|.+
T Consensus        26 ~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~   63 (89)
T 1x64_A           26 PLCDKCGSGIVG-AVVKARDKYRHPECFVCADCNLNLKQ   63 (89)
T ss_dssp             CBCTTTCCBCCS-CCEESSSCEECTTTCCCSSSCCCTTT
T ss_pred             CCcccCCCEecc-cEEEECCceECccCCEecCCCCCCCC
Confidence            799999999976 56789999999999999999999863

>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=98.89  E-value=4.8e-10  Score=71.22  Aligned_cols=37  Identities=19%  Similarity=0.544  Sum_probs=33.9

Q ss_pred             ccccccccccccCceEEeCCCccccCCeecccCCcccC
Q psy15163        138 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT  175 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~  175 (176)
                      ++|..|+++|.+ +++.|+++.||++||+|..|+++|.
T Consensus        16 ~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~   52 (79)
T 1x62_A           16 PMCDKCGTGIVG-VFVKLRDRHRHPECYVCTDCGTNLK   52 (79)
T ss_dssp             CCCSSSCCCCCS-SCEECSSCEECTTTTSCSSSCCCHH
T ss_pred             CccccCCCCccC-cEEEECcceeCcCcCeeCCCCCCCC
Confidence            799999999976 5778999999999999999999874

>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=98.87  E-value=4.1e-10  Score=77.49  Aligned_cols=41  Identities=20%  Similarity=0.367  Sum_probs=36.8

Q ss_pred             CCCcccccccccccccCceEEeCCCccccCCeecccCCcccC
Q psy15163        134 MLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKIIT  175 (176)
Q Consensus       134 ~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~l~  175 (176)
                      ++. ++|..|+++|.+..++.|+++.||++||+|..|+.+|.
T Consensus         3 ~~~-~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~   43 (122)
T 1m3v_A            3 LSW-KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLG   43 (122)
T ss_dssp             SCC-CCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTT
T ss_pred             CCC-CCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCccc
Confidence            345 89999999998877678999999999999999999985

>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3

Probab=98.84  E-value=1.5e-09  Score=71.98  Aligned_cols=42  Identities=19%  Similarity=0.349  Sum_probs=36.8

Q ss_pred             CCCccccccccccccc-CceEEeCCCccccCCeecccCCcccCC
Q psy15163        134 MLDIPRCHACDELIFV-NEYTLAENKTFHVKHFCCYECDKIITQ  176 (176)
Q Consensus       134 ~~~~~~C~~C~~~I~~-~~~~~a~~~~~H~~CF~C~~C~~~l~~  176 (176)
                      .+. ++|..|+++|.. +.++.++++.||++||+|..|+++|.+
T Consensus         3 ~~~-~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~   45 (101)
T 2cup_A            3 SGS-SGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLAN   45 (101)
T ss_dssp             SCC-CBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTS
T ss_pred             CCC-CcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCc
Confidence            355 899999999974 677889999999999999999999863

>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4

Probab=98.04  E-value=1.1e-06  Score=45.48  Aligned_cols=28  Identities=25%  Similarity=0.632  Sum_probs=25.5

Q ss_pred             ccccccccccccCceEEeCCCccccCCe
Q psy15163        138 PRCHACDELIFVNEYTLAENKTFHVKHF  165 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF  165 (176)
                      ++|..|++.|...+.+.+.++.||..||
T Consensus         4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF   31 (31)
T 1zfo_A            4 PNCARCGKIVYPTEKVNCLDKFWHKACF   31 (31)
T ss_dssp             CBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred             CcCCccCCEEecceeEEECCeEecccCC
Confidence            7999999999877777799999999998

>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4

Probab=97.97  E-value=9.3e-07  Score=45.72  Aligned_cols=28  Identities=29%  Similarity=0.787  Sum_probs=24.5

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCc
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCF  104 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf  104 (176)
                      ..|..|++.|+..|.+...     |+.||..||
T Consensus         4 ~~C~~C~k~Vy~~Ek~~~~-----g~~~Hk~CF   31 (31)
T 1zfo_A            4 PNCARCGKIVYPTEKVNCL-----DKFWHKACF   31 (31)
T ss_dssp             CBCSSSCSBCCGGGCCCSS-----SSCCCGGGC
T ss_pred             CcCCccCCEEecceeEEEC-----CeEecccCC
Confidence            3899999999999888644     889999998

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=83.89  E-value=0.7  Score=29.92  Aligned_cols=43  Identities=16%  Similarity=0.278  Sum_probs=27.5

Q ss_pred             cccCccccCCCceeeeCCcccCHhHHhh---CCCccccccccccccc
Q psy15163        106 CSTCDELLVDLMYFHYKGNVYCLRDYAT---MLDIPRCHACDELIFV  149 (176)
Q Consensus       106 C~~C~~~l~~~~~~~~~g~~yC~~~y~~---~~~~~~C~~C~~~I~~  149 (176)
                      |..|+.|+........=...+|..|+..   +-. ..|..|+.+|..
T Consensus         4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~-k~Cp~C~~~V~r   49 (101)
T 3vk6_A            4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGD-KMCPGCSDPVQR   49 (101)
T ss_dssp             CTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTC-CBCTTTCCBCSE
T ss_pred             cCccCCCeEEEeeeccccccHHHHHHHHHHhccC-CCCcCcCCeeee
Confidence            5556666654333334455778888754   334 689999999954

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=82.47  E-value=1.3  Score=28.90  Aligned_cols=74  Identities=14%  Similarity=0.232  Sum_probs=34.1

Q ss_pred             ccccccccccCCCeEEEEeccCCCcccCccCcccccCccccCCCceeeeCCcccCHhHHhhCCCcccccccccccccCce
Q psy15163         73 TCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEY  152 (176)
Q Consensus        73 ~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C~~~I~~~~~  152 (176)
                      .|..|+..-...+.+ .-...  ++.||..|+.=..  .+       ...+..+|..|       ..|..|++.-....+
T Consensus         9 ~C~~C~~~g~~~~ll-~C~~C--~~~~H~~Cl~~~~--~~-------~~~~~W~C~~C-------~~C~~C~~~~~~~~l   69 (111)
T 2ysm_A            9 NCAVCDSPGDLLDQF-FCTTC--GQHYHGMCLDIAV--TP-------LKRAGWQCPEC-------KVCQNCKQSGEDSKM   69 (111)
T ss_dssp             CBTTTCCCCCTTTSE-ECSSS--CCEECTTTTTCCC--CT-------TTSTTCCCTTT-------CCCTTTCCCSCCTTE
T ss_pred             CCcCCCCCCCCcCCe-ECCCC--CCCcChHHhCCcc--cc-------ccccCccCCcC-------CcccccCccCCCCCe
Confidence            566665543212223 22223  3467777764221  11       12344556555       256666665433333


Q ss_pred             EE--eCCCccccCCe
Q psy15163        153 TL--AENKTFHVKHF  165 (176)
Q Consensus       153 ~~--a~~~~~H~~CF  165 (176)
                      +.  .=++.||..|.
T Consensus        70 l~Cd~C~~~yH~~Cl   84 (111)
T 2ysm_A           70 LVCDTCDKGYHTFCL   84 (111)
T ss_dssp             EECSSSCCEEEGGGS
T ss_pred             eECCCCCcHHhHHhc
Confidence            32  23455666654

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=82.28  E-value=1.2  Score=29.37  Aligned_cols=39  Identities=10%  Similarity=0.212  Sum_probs=24.1

Q ss_pred             eCCcccCHhHHhhCCCcccccccccccccCceEE--eCCCccccCCee
Q psy15163        121 YKGNVYCLRDYATMLDIPRCHACDELIFVNEYTL--AENKTFHVKHFC  166 (176)
Q Consensus       121 ~~g~~yC~~~y~~~~~~~~C~~C~~~I~~~~~~~--a~~~~~H~~CF~  166 (176)
                      ..+..+|..|       ..|..|++.-.++.++.  .=++.||..|..
T Consensus        49 ~~~~W~C~~C-------~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~   89 (114)
T 2kwj_A           49 KTYKWQCIEC-------KSCILCGTSENDDQLLFCDDCDRGYHMYCLN   89 (114)
T ss_dssp             HHTTCCCGGG-------CCCTTTTCCTTTTTEEECSSSCCEEETTTSS
T ss_pred             CCCccCcccc-------CccCcccccCCCCceEEcCCCCccccccccC
Confidence            3445667666       46778877654455553  335778887754

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.69  E-value=0.67  Score=27.00  Aligned_cols=46  Identities=28%  Similarity=0.614  Sum_probs=27.3

Q ss_pred             cccccCccccCCCceeeeCCcccCHhHHhhCC--CcccccccccccccC
Q psy15163        104 FVCSTCDELLVDLMYFHYKGNVYCLRDYATML--DIPRCHACDELIFVN  150 (176)
Q Consensus       104 f~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~--~~~~C~~C~~~I~~~  150 (176)
                      +.|..|...+... ....=|..||..|..+.+  ....|..|+..|..+
T Consensus        16 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           16 YKCEKCHLVLCSP-KQTECGHRFCESCMAALLSSSSPKCTACQESIVKD   63 (66)
T ss_dssp             EECTTTCCEESSC-CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred             CCCCCCChHhcCe-eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence            4555555555332 223455667777776543  115899999888544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	176
d1g47a2	35	g.39.1.3 (A:36-70) Pinch (particularly interesting	0.001

>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (75), Expect = 0.001
 Identities = 8/31 (25%), Positives = 18/31 (58%)

Query: 104 FVCSTCDELLVDLMYFHYKGNVYCLRDYATM 134
           FVC+ C +   + +++ ++G  YC  D+  +
Sbjct: 1   FVCAQCFQQFPEGLFYEFEGRKYCEHDFQML 31

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	176
d1x3ha1	35	Leupaxin {Human (Homo sapiens) [TaxId: 9606]}	99.4
d2cuqa2	35	Four and a half LIM domains 3, FHL3 {Human (Homo s	99.0
d1g47a2	35	Pinch (particularly interesting new Cys-His) prote	98.99
d2dloa1	35	Thyroid receptor interacting protein 6, TRIP6 {Hum	98.91
d2dara2	45	PDZ and LIM domain protein 5, Enigma {Human (Homo	98.86
d1x63a1	37	Four and a half LIM domains protein 1, FHL-1 {Huma	98.83
d1v6ga1	41	Actin-binding LIM protein 2, abLIM2 {Human (Homo s	98.81
d2d8xa2	26	Pinch (particularly interesting new Cys-His) prote	98.7
d1u5sb1	31	Pinch (particularly interesting new Cys-His) prote	98.68
d1b8ta4	49	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	98.61
d1x3ha1	35	Leupaxin {Human (Homo sapiens) [TaxId: 9606]}	98.54
d2d8za2	32	Four and a half LIM domains protein 2, FHL2 {Human	98.52
d1x3ha2	32	Leupaxin {Human (Homo sapiens) [TaxId: 9606]}	98.52
d1x6aa1	34	Lim domain kinase 2 {Human (Homo sapiens) [TaxId:	98.47
d1u5sb2	35	Pinch (particularly interesting new Cys-His) prote	98.37
d2d8za1	26	Four and a half LIM domains protein 2, FHL2 {Human	98.34
d1x63a1	37	Four and a half LIM domains protein 1, FHL-1 {Huma	98.32
d2dj7a2	36	Actin-binding LIM protein 3, abLIM-3 {Human (Homo	98.32
d2cuqa2	35	Four and a half LIM domains 3, FHL3 {Human (Homo s	98.3
d2d8ya2	42	Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}	98.3
d2cuqa1	32	Four and a half LIM domains 3, FHL3 {Human (Homo s	98.3
d1rutx3	31	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	98.25
d1x4la1	29	Four and a half LIM domains protein 2, FHL2 {Human	98.24
d2dj7a1	31	Actin-binding LIM protein 3, abLIM-3 {Human (Homo	98.23
d2cura2	26	Four and a half LIM domains protein 1, FHL-1 {Huma	98.23
d1imla2	48	Cysteine-rich (intestinal) protein, CRP, CRIP {Rat	98.22
d1rutx1	30	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	98.21
d1zfoa_	30	LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}	98.19
d2dara2	45	PDZ and LIM domain protein 5, Enigma {Human (Homo	98.19
d1j2oa1	30	Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 1	98.17
d1ibia2	31	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	98.15
d2cu8a1	30	Cysteine-rich (intestinal) protein, CRP, CRIP {Hum	98.13
d2dara1	32	PDZ and LIM domain protein 5, Enigma {Human (Homo	98.12
d1rutx3	31	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	98.06
d1b8ta2	65	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	98.06
d1x68a1	29	Four and a half LIM domains protein 5, FHL-5 {Huma	98.04
d1zfoa_	30	LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}	98.03
d1b8ta3	43	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	98.02
d2dj7a2	36	Actin-binding LIM protein 3, abLIM-3 {Human (Homo	98.01
d2d8ya1	35	Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}	97.94
d1x62a2	35	PDZ and LIM domain protein 1 Elfin {Human (Homo sa	97.93
d1wyha1	32	Four and a half LIM domains 3, FHL3 {Human (Homo s	97.92
d2dloa1	35	Thyroid receptor interacting protein 6, TRIP6 {Hum	97.92
d1x4ka1	32	Four and a half LIM domains protein 2, FHL2 {Human	97.91
d1ibia1	28	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	97.9
d2cu8a1	30	Cysteine-rich (intestinal) protein, CRP, CRIP {Hum	97.89
d2co8a2	36	Nedd9 interacting protein with calponin homology,	97.86
d1a7ia2	32	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	97.85
d1x64a1	45	PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus m	97.85
d2cu8a2	33	Cysteine-rich (intestinal) protein, CRP, CRIP {Hum	97.78
d2d8ya1	35	Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}	97.78
d1b8ta3	43	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	97.76
d1rutx1	30	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	97.72
d1x4ka2	27	Four and a half LIM domains protein 2, FHL2 {Human	97.71
d1x4ka2	27	Four and a half LIM domains protein 2, FHL2 {Human	97.71
d1wyha2	27	Four and a half LIM domains 3, FHL3 {Human (Homo s	97.67
d2cura1	31	Four and a half LIM domains protein 1, FHL-1 {Huma	97.65
d2d8za1	26	Four and a half LIM domains protein 2, FHL2 {Human	97.63
d2d8xa2	26	Pinch (particularly interesting new Cys-His) prote	97.63
d1u5sb1	31	Pinch (particularly interesting new Cys-His) prote	97.6
d2co8a2	36	Nedd9 interacting protein with calponin homology,	97.6
d1j2oa1	30	Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 1	97.57
d1x61a2	32	Thyroid receptor interacting protein 6, TRIP6 {Hum	97.55
d2cura2	26	Four and a half LIM domains protein 1, FHL-1 {Huma	97.54
d1wyha2	27	Four and a half LIM domains 3, FHL3 {Human (Homo s	97.46
d2dloa2	33	Thyroid receptor interacting protein 6, TRIP6 {Hum	97.42
d1x64a2	31	PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus m	97.37
d1x4la1	29	Four and a half LIM domains protein 2, FHL2 {Human	97.36
d2cupa3	27	Four and a half LIM domains protein 1, FHL-1 {Huma	97.34
d1wiga1	32	Actin-binding LIM protein 2, abLIM2 {Human (Homo s	97.33
d1ibia1	28	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	97.13
d1x68a1	29	Four and a half LIM domains protein 5, FHL-5 {Huma	97.11
d1b8ta1	35	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	97.1
d1x61a1	27	Thyroid receptor interacting protein 6, TRIP6 {Hum	97.06
d1b8ta1	35	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	97.03
d1a7ia1	28	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	96.99
d1x62a1	31	PDZ and LIM domain protein 1 Elfin {Human (Homo sa	96.95
d2cupa3	27	Four and a half LIM domains protein 1, FHL-1 {Huma	96.9
d1v6ga1	41	Actin-binding LIM protein 2, abLIM2 {Human (Homo s	96.9
d1a7ia1	28	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	96.87
d1x63a2	32	Four and a half LIM domains protein 1, FHL-1 {Huma	96.86
d1g47a1	35	Pinch (particularly interesting new Cys-His) prote	96.79
d1rutx2	34	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	96.78
d1x62a2	35	PDZ and LIM domain protein 1 Elfin {Human (Homo sa	96.66
d1x64a1	45	PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus m	96.57
d1rutx4	33	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	96.07
d2cora2	35	Pinch (particularly interesting new Cys-His) prote	95.98
d1g47a1	35	Pinch (particularly interesting new Cys-His) prote	95.14
d2cupa2	31	Four and a half LIM domains protein 1, FHL-1 {Huma	94.66
d1wiga2	41	Actin-binding LIM protein 2, abLIM2 {Human (Homo s	94.54
d1wiga2	41	Actin-binding LIM protein 2, abLIM2 {Human (Homo s	94.43
d2cora1	31	Pinch (particularly interesting new Cys-His) prote	94.24
d1x61a1	27	Thyroid receptor interacting protein 6, TRIP6 {Hum	94.18
d2d8xa1	32	Pinch (particularly interesting new Cys-His) prote	93.51
d1x6aa2	34	Lim domain kinase 2 {Human (Homo sapiens) [TaxId:	92.66
d1x6aa1	34	Lim domain kinase 2 {Human (Homo sapiens) [TaxId:	92.03
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	91.6
d1j2oa2	33	Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 1	90.51
d2cura1	31	Four and a half LIM domains protein 1, FHL-1 {Huma	88.78
d1x68a2	34	Four and a half LIM domains protein 5, FHL-5 {Huma	87.43
d2co8a1	33	Nedd9 interacting protein with calponin homology,	86.38
d1x4la2	30	Four and a half LIM domains protein 2, FHL2 {Human	83.73
d2d8za2	32	Four and a half LIM domains protein 2, FHL2 {Human	83.59
d1v6ga2	40	Actin-binding LIM protein 2, abLIM2 {Human (Homo s	82.36
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	82.31
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	80.26

>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Leupaxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.8e-14  Score=75.62  Aligned_cols=35  Identities=26%  Similarity=0.736  Sum_probs=31.6

Q ss_pred             hHHhhCCCcccccccccccccCceEEeCCCccccCCe
Q psy15163        129 RDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHF  165 (176)
Q Consensus       129 ~~y~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF  165 (176)
                      +||.++|+ |+|..|+++|.+ .+|.|+++.|||+||
T Consensus         1 ~DY~~~fa-pkC~~C~~~I~g-~~v~Al~~~wHpeCF   35 (35)
T d1x3ha1           1 KDFLAMFS-PKCGGCNRPVLE-NYLSAMDTVWHPECF   35 (35)
T ss_dssp             CCCCCCCS-CBCTTTCCBCCS-SCEEETTEEECTTTC
T ss_pred             CcHHHHhC-hhhhhcCCcccc-hheeecCCccCcccC
Confidence            36889999 999999999975 577899999999998

>d2cuqa2 g.39.1.3 (A:8-42) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=3.3e-11  Score=61.24  Aligned_cols=35  Identities=17%  Similarity=0.445  Sum_probs=31.2

Q ss_pred             hHHhhCCCcccccccccccccCceEEeCCCccccCCe
Q psy15163        129 RDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHF  165 (176)
Q Consensus       129 ~~y~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF  165 (176)
                      .||+++|+ ++|..|+++|..+.+ .+.++.||.+||
T Consensus         1 PCyE~kfa-~~C~~Ckk~It~GGv-tY~dqpWHkeCF   35 (35)
T d2cuqa2           1 PCYENKFA-PRCARCSKTLTQGGV-TYRDQPWHRECL   35 (35)
T ss_dssp             CCCCCCSS-CCCTTTCCCCCSCCE-ESSSSEECTTTC
T ss_pred             CchHHHHH-HHHhhcCCccccCce-eecCCcchhhhC
Confidence            37899999 999999999987654 599999999998

>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=6.7e-11  Score=61.59  Aligned_cols=34  Identities=26%  Similarity=0.898  Sum_probs=32.5

Q ss_pred             cccccCccccCCCceeeeCCcccCHhHHhhCCCcc
Q psy15163        104 FVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIP  138 (176)
Q Consensus       104 f~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~  138 (176)
                      |+|..|+++|++..|++++|++||+.||.++|+ |
T Consensus         1 F~C~~C~~~f~~~~F~e~~G~pYCe~~Y~~lFA-P   34 (35)
T d1g47a2           1 FVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA-P   34 (35)
T ss_dssp             CCCTTTCCCCGGGCSEEETTEEECHHHHHHHCC-C
T ss_pred             CCCCCCcCCCCCCCeEEECCEecChHhHHhhcC-C
Confidence            789999999999999999999999999999998 5

>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1e-10  Score=59.70  Aligned_cols=34  Identities=26%  Similarity=0.495  Sum_probs=28.4

Q ss_pred             hHHhhCCCcccccccccccccCceEEeCCCccccCCe
Q psy15163        129 RDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHF  165 (176)
Q Consensus       129 ~~y~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF  165 (176)
                      .||...+  .+|..|+++|++ .+++|+|+.|||.||
T Consensus         2 ~Cy~~tl--EkC~~C~~~I~d-riLrA~Gk~yHP~CF   35 (35)
T d2dloa1           2 GCYVATL--EKCATCSQPILD-RILRAMGKAYHPGCF   35 (35)
T ss_dssp             CCCCSSC--CBCTTTCCBCCS-CCEEETTEEECTTTC
T ss_pred             hhHHHHH--HHHHHhchHHHH-HHHHHhCCCCCCCCC
Confidence            4665554  599999999965 478899999999998

>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 5, Enigma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.8e-10  Score=60.93  Aligned_cols=27  Identities=30%  Similarity=0.700  Sum_probs=24.6

Q ss_pred             ccccccccccccCceEEeCCCccccCCe
Q psy15163        138 PRCHACDELIFVNEYTLAENKTFHVKHF  165 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF  165 (176)
                      |+|..|+++|.+ .++.|+|+.|||+||
T Consensus        19 P~C~~C~~pI~g-~~vtAlgk~WHPEhF   45 (45)
T d2dara2          19 PMCAHCNQVIRG-PFLVALGKSWHPEEF   45 (45)
T ss_dssp             CBBSSSCCBCCS-CEEEETTEEECTTTC
T ss_pred             eeccccCCcccC-ceeeecCCccCcCCC
Confidence            899999999965 577799999999998

>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=3.3e-10  Score=59.23  Aligned_cols=36  Identities=17%  Similarity=0.363  Sum_probs=31.7

Q ss_pred             hHHhhCCCcccccccccccccCc-eEEeCCCccccCCe
Q psy15163        129 RDYATMLDIPRCHACDELIFVNE-YTLAENKTFHVKHF  165 (176)
Q Consensus       129 ~~y~~~~~~~~C~~C~~~I~~~~-~~~a~~~~~H~~CF  165 (176)
                      .||.+.|+ ++|..|+++|.++. .+.+.++.||.+||
T Consensus         1 kCy~~~~a-~~C~~C~k~I~~G~k~veykg~~WHe~CF   37 (37)
T d1x63a1           1 KCTTREDS-PKCKGCFKAIVAGDQNVEYKGTVWHKDCF   37 (37)
T ss_dssp             CCCSCCCS-CBCSSSCCBCCSSSCEEECSSCEEETTTC
T ss_pred             CccccccC-cccccCCCccCCCCeEeEeCCccchhccC
Confidence            37888999 99999999998664 47799999999998

>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 2, abLIM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=7.7e-10  Score=58.63  Aligned_cols=34  Identities=35%  Similarity=0.639  Sum_probs=30.8

Q ss_pred             hHHhhCCCcccccccccccccCceEEeCCCccccCC
Q psy15163        129 RDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKH  164 (176)
Q Consensus       129 ~~y~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~C  164 (176)
                      .+|.++|+ .+|..|++.|. ++++.|.++.|||+|
T Consensus         8 ~DYq~~fG-~~C~~C~~~It-G~V~~Ag~~~yHP~C   41 (41)
T d1v6ga1           8 LDYQRLYG-TRCFSCDQFIE-GEVVSALGKTYHPDC   41 (41)
T ss_dssp             SCGGGSCC-CBCTTTCCBCC-SCCEEETTEEECTTT
T ss_pred             ccHHHHhC-cccccccCEee-eeeeEecCcccCCCC
Confidence            47899999 99999999995 578889999999998

>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=3.1e-09  Score=52.41  Aligned_cols=26  Identities=38%  Similarity=0.569  Sum_probs=23.3

Q ss_pred             ccccccccccccCceEEeCCCccccCC
Q psy15163        138 PRCHACDELIFVNEYTLAENKTFHVKH  164 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~~a~~~~~H~~C  164 (176)
                      |+|+.|++||.+ .++.|++++||+++
T Consensus         6 p~C~~C~~PI~~-~~vtAlgk~WHpEH   31 (31)
T d1u5sb1           6 PICGACRRPIEG-RVVNAMGKQWHVEH   31 (31)
T ss_dssp             CEETTTTEECCS-CEECCTTSBEETTT
T ss_pred             cchhhcCCchhh-hHhhhhccccCCCC
Confidence            999999999976 46779999999985

>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.61  E-value=1.1e-08  Score=56.54  Aligned_cols=41  Identities=22%  Similarity=0.470  Sum_probs=37.6

Q ss_pred             ccccCccccCCCceeeeCCcccCHhHHhhCCCcccccccccc
Q psy15163        105 VCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDEL  146 (176)
Q Consensus       105 ~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C~~~  146 (176)
                      +|..|++.|.+.....+|+++||+.||.++|+ |+..+.+..
T Consensus         1 KC~~C~k~Lds~t~~ehdg~~YCk~CY~k~fG-PKG~g~G~g   41 (49)
T d1b8ta4           1 RCAKCGKSLESTTLADKDGEIYCKGCYAKNFG-PKGFGFGQG   41 (49)
T ss_dssp             BCTTTCCBCCSSSEEEETTEEEEHHHHHHHTC-CCCCCCCCC
T ss_pred             ChhhcCCccCCCcccccCCcccchhhhhhccC-CCccCcccC
Confidence            58999999999899999999999999999999 999887754

>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Leupaxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2e-08  Score=52.06  Aligned_cols=33  Identities=27%  Similarity=0.717  Sum_probs=26.0

Q ss_pred             CCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCc
Q psy15163         62 GNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCF  104 (176)
Q Consensus        62 ~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf  104 (176)
                      |..+.++    +|+.|+++|. ++.| .|.    ++.||++||
T Consensus         3 Y~~~fap----kC~~C~~~I~-g~~v-~Al----~~~wHpeCF   35 (35)
T d1x3ha1           3 FLAMFSP----KCGGCNRPVL-ENYL-SAM----DTVWHPECF   35 (35)
T ss_dssp             CCCCCSC----BCTTTCCBCC-SSCE-EET----TEEECTTTC
T ss_pred             HHHHhCh----hhhhcCCccc-chhe-eec----CCccCcccC
Confidence            4555555    9999999998 5555 554    889999998

>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.5e-08  Score=49.65  Aligned_cols=32  Identities=22%  Similarity=0.563  Sum_probs=29.6

Q ss_pred             ccccCccccCCCceeeeCCcccCHhHHhhCCC
Q psy15163        105 VCSTCDELLVDLMYFHYKGNVYCLRDYATMLD  136 (176)
Q Consensus       105 ~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~  136 (176)
                      .|..|.++|.++.|.++|++|||-.||.++|+
T Consensus         1 ~C~~C~~~L~GQry~~rd~~PyC~~Cf~~lfA   32 (32)
T d2d8za2           1 VCTACRKQLSGQRFTARDDFAYCLNCFCDLYA   32 (32)
T ss_dssp             BCSSSCCBCTTSCCEESSSSEECHHHHHHHTC
T ss_pred             CcccCCccccCceeeecCCCeehHHhhHhhcC
Confidence            48899999999999999999999999998874

>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Leupaxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.6e-08  Score=50.69  Aligned_cols=31  Identities=23%  Similarity=0.519  Sum_probs=28.4

Q ss_pred             ccccCccccCCCceeeeCCcccCHhHHhhCC
Q psy15163        105 VCSTCDELLVDLMYFHYKGNVYCLRDYATML  135 (176)
Q Consensus       105 ~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~  135 (176)
                      +|..|.+|+.+..||+.+|+|||+.||.++.
T Consensus         1 VC~~C~~PF~~~~Fy~~~g~PyCe~HyH~~~   31 (32)
T d1x3ha2           1 VCGDCFTSFSTGSFFELDGRPFCELHYHHRR   31 (32)
T ss_dssp             BCSSSCCBSCSSCCEESSSCEECHHHHHHHH
T ss_pred             CcCccCCcCCCCCeEeECCccchHHhhhhhc
Confidence            5889999999999999999999999998753

>d1x6aa1 g.39.1.3 (A:8-41) Lim domain kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Lim domain kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.5e-08  Score=50.55  Aligned_cols=33  Identities=24%  Similarity=0.516  Sum_probs=29.3

Q ss_pred             HHhhCCCcccccccccccccCceEEeCCCccccCC
Q psy15163        130 DYATMLDIPRCHACDELIFVNEYTLAENKTFHVKH  164 (176)
Q Consensus       130 ~y~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~C  164 (176)
                      +|..+|+ ..|.+|.+.|. +.++.|.+..|||+|
T Consensus         2 dYw~kfg-e~C~~C~~~it-GpvMvAG~~K~HPEC   34 (34)
T d1x6aa1           2 DYWGKFG-EFCHGCSLLMT-GPFMVAGEFKYHPEC   34 (34)
T ss_dssp             CSSCCSS-CBCTTTCCBCC-SCCBCCTTCCBCTTS
T ss_pred             cHHHHHH-HHhhhhHhhcc-cceeeecccccCCCC
Confidence            6889999 99999999775 677779999999998

>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.1e-07  Score=47.21  Aligned_cols=33  Identities=27%  Similarity=0.747  Sum_probs=31.5

Q ss_pred             cccccCccccCCCceeeeCCcccCHhHHhhCCC
Q psy15163        104 FVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD  136 (176)
Q Consensus       104 f~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~  136 (176)
                      |+|..|.+|+-+...|++.|..||+.+|.++|+
T Consensus         1 FvCA~CekPF~G~rhyE~~g~ayCe~Hy~qLfg   33 (35)
T d1u5sb2           1 FVCAKCEKPFLGHRHYERKGLAYCETHYNQLFG   33 (35)
T ss_dssp             CBCTTTCCBCSSSCCEEETTEEECHHHHHHHCS
T ss_pred             CcccccCCccCCchhhhhcCchHHHHHHHHHhc
Confidence            789999999999999999999999999999987

>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.7e-07  Score=48.69  Aligned_cols=36  Identities=33%  Similarity=0.848  Sum_probs=30.7

Q ss_pred             CCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCc
Q psy15163         61 CGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCF  104 (176)
Q Consensus        61 ~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf  104 (176)
                      |+....++    +|..|+++|.++..-+.+.    ++.||.+||
T Consensus         2 Cy~~~~a~----~C~~C~k~I~~G~k~veyk----g~~WHe~CF   37 (37)
T d1x63a1           2 CTTREDSP----KCKGCFKAIVAGDQNVEYK----GTVWHKDCF   37 (37)
T ss_dssp             CCSCCCSC----BCSSSCCBCCSSSCEEECS----SCEEETTTC
T ss_pred             ccccccCc----ccccCCCccCCCCeEeEeC----CccchhccC
Confidence            55656555    9999999999999988886    889999998

>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 3, abLIM-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=8.8e-08  Score=48.25  Aligned_cols=28  Identities=36%  Similarity=0.600  Sum_probs=25.0

Q ss_pred             ccccccccccccCceEEeCCCccccCCe
Q psy15163        138 PRCHACDELIFVNEYTLAENKTFHVKHF  165 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF  165 (176)
                      ..|++|++.|..+..+.|+++.||.+||
T Consensus         9 ~~CagCg~eik~gQaL~ALdkqWH~~CF   36 (36)
T d2dj7a2           9 SHCAGCKEEIKHGQSLLALDKQWHVSCF   36 (36)
T ss_dssp             SCCTTTCCCCSSSCCEEETTEEECTTTC
T ss_pred             ccccccchhhhCCceeeeeecceeeeeC
Confidence            5899999999877666699999999998

>d2cuqa2 g.39.1.3 (A:8-42) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.1e-07  Score=48.01  Aligned_cols=35  Identities=26%  Similarity=0.785  Sum_probs=27.8

Q ss_pred             CCCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccCc
Q psy15163         60 PCGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCF  104 (176)
Q Consensus        60 ~~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf  104 (176)
                      ||+++..++    +|..|+++|..+- | .-.    ++.||.+||
T Consensus         1 PCyE~kfa~----~C~~Ckk~It~GG-v-tY~----dqpWHkeCF   35 (35)
T d2cuqa2           1 PCYENKFAP----RCARCSKTLTQGG-V-TYR----DQPWHRECL   35 (35)
T ss_dssp             CCCCCCSSC----CCTTTCCCCCSCC-E-ESS----SSEECTTTC
T ss_pred             CchHHHHHH----HHhhcCCccccCc-e-eec----CCcchhhhC
Confidence            577777776    9999999998764 3 332    889999998

>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Eplin, LIMA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.3e-07  Score=50.40  Aligned_cols=32  Identities=25%  Similarity=0.615  Sum_probs=30.2

Q ss_pred             ccccCccccCCCceeeeCCcccCHhHHhhCCC
Q psy15163        105 VCSTCDELLVDLMYFHYKGNVYCLRDYATMLD  136 (176)
Q Consensus       105 ~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~  136 (176)
                      +|..|+..|.-.+|...+|.+||+.||.++|.
T Consensus         1 rC~~C~~~Ls~~~yas~~G~lYCkpHf~qLF~   32 (42)
T d2d8ya2           1 RCSYCNNKLSLGTYASLHGRIYCKPHFNQLFK   32 (42)
T ss_dssp             BCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSC
T ss_pred             CcCcCCCCccCCcchhhCCEeccHHHHHHHHH
Confidence            68999999998899999999999999999997

>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.6e-07  Score=46.06  Aligned_cols=32  Identities=19%  Similarity=0.575  Sum_probs=29.5

Q ss_pred             ccccCccccCCCceeeeCCcccCHhHHhhCCC
Q psy15163        105 VCSTCDELLVDLMYFHYKGNVYCLRDYATMLD  136 (176)
Q Consensus       105 ~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~  136 (176)
                      .|..|+++|.++.|-.+|+++||..||.++|+
T Consensus         1 vCt~Ck~~LaGqrFTSrde~pYC~~Cfg~LfA   32 (32)
T d2cuqa1           1 VCTGCQTPLAGQQFTSRDEDPYCVACFGELFA   32 (32)
T ss_dssp             BCSSSCCBCTTCCEEECSSSEEEHHHHHHHTT
T ss_pred             CccccCccccCCccccCCCCccHHHHhHhhcC
Confidence            48899999999999999999999999998874

>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=1.2e-07  Score=46.88  Aligned_cols=28  Identities=32%  Similarity=0.624  Sum_probs=25.3

Q ss_pred             ccccccccccccCceE-EeCCCccccCCe
Q psy15163        138 PRCHACDELIFVNEYT-LAENKTFHVKHF  165 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~-~a~~~~~H~~CF  165 (176)
                      -.|+.|++.|...+++ .|++..||.+||
T Consensus         3 g~Ca~C~~~I~~~e~VmRA~~~VyHl~CF   31 (31)
T d1rutx3           3 GACSACGQSIPASELVMRAQGNVYHLKCF   31 (31)
T ss_dssp             EECTTTCCEECTTSEEEEETTEEECGGGC
T ss_pred             cccccccCcCChhHhheecccceeeeccC
Confidence            4799999999988875 699999999998

>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.2e-07  Score=44.52  Aligned_cols=26  Identities=27%  Similarity=0.571  Sum_probs=22.9

Q ss_pred             cccccccccc---CceEEeCCCccccCCe
Q psy15163        140 CHACDELIFV---NEYTLAENKTFHVKHF  165 (176)
Q Consensus       140 C~~C~~~I~~---~~~~~a~~~~~H~~CF  165 (176)
                      |+.|.+||.+   ..+|.+.+++||.+||
T Consensus         1 C~~C~kPItg~gg~kyisFE~R~WH~~CF   29 (29)
T d1x4la1           1 CAGCTNPISGLGGTKYISFEERQWHNDCF   29 (29)
T ss_dssp             BTTTTBCCCCSSSCSCEECSSCEECTTTC
T ss_pred             CCccCCcccccCCceEEEeecccccccCC
Confidence            7889999974   3688999999999998

>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 3, abLIM-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.6e-07  Score=45.19  Aligned_cols=31  Identities=32%  Similarity=0.718  Sum_probs=27.7

Q ss_pred             ccccCccccCCCceeeeCCcccCHhHHhhCCC
Q psy15163        105 VCSTCDELLVDLMYFHYKGNVYCLRDYATMLD  136 (176)
Q Consensus       105 ~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~  136 (176)
                      +|..|+..|.+ .|..+||.|||+.+|...|+
T Consensus         1 kC~~C~~vL~g-EYm~kdG~PyCe~DY~~~FG   31 (31)
T d2dj7a1           1 KCQTCSVILTG-EYISKDGVPYCESDYHAQFG   31 (31)
T ss_dssp             BCSSSCCBCSS-CCEEETTEEECTTHHHHHTT
T ss_pred             CccccCccccc-eeecCCCCcccHHHHHHhcC
Confidence            58899999987 68899999999999998875

>d1imla2 g.39.1.3 (A:29-76) Cysteine-rich (intestinal) protein, CRP, CRIP {Rat (Rattus rattus) [TaxId: 10117]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=98.22  E-value=2.4e-07  Score=50.48  Aligned_cols=34  Identities=26%  Similarity=0.571  Sum_probs=31.3

Q ss_pred             ccccCccccCCCceeeeCCcccC-HhHHhhCCCccc
Q psy15163        105 VCSTCDELLVDLMYFHYKGNVYC-LRDYATMLDIPR  139 (176)
Q Consensus       105 ~C~~C~~~l~~~~~~~~~g~~yC-~~~y~~~~~~~~  139 (176)
                      +|..|++.|......+++++||| +.||..+|+ |+
T Consensus         1 kC~~C~K~L~sg~~aeHdg~pYC~k~CY~~~FG-Pk   35 (48)
T d1imla2           1 KCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG-PK   35 (48)
T ss_dssp             BCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS-CC
T ss_pred             CchhcCcCcCCCChhhcCCcccccccchhhccC-CC
Confidence            58899999999999999999999 779999999 64

>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=2.4e-07  Score=45.56  Aligned_cols=28  Identities=21%  Similarity=0.367  Sum_probs=25.3

Q ss_pred             ccccccccccccCceEEeCCCccccCCe
Q psy15163        138 PRCHACDELIFVNEYTLAENKTFHVKHF  165 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF  165 (176)
                      ..|++|+++|.++-++.++++.||.+|.
T Consensus         3 ~~CaGC~~~I~DRflL~v~dr~WH~~CL   30 (30)
T d1rutx1           3 KRCAGCGGKIADRFLLYAMDSYWHSRCL   30 (30)
T ss_dssp             CBBTTTCCBCCCSEEEEETTEEECGGGC
T ss_pred             cccCCCCCccchhhhhccchhhhhhhhC
Confidence            5899999999888778899999999984

>d1zfoa_ g.39.1.4 (A:) LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LASP-1
domain: LASP-1
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.19  E-value=9e-08  Score=46.19  Aligned_cols=28  Identities=29%  Similarity=0.787  Sum_probs=25.2

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCc
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCF  104 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf  104 (176)
                      +.|++|++.+++.|.+...     ++.||+.||
T Consensus         3 ~~CaRC~k~VYp~Ekl~Cl-----Dk~WHK~CF   30 (30)
T d1zfoa_           3 PNCARCGKIVYPTEKVNCL-----DKFWHKACF   30 (30)
T ss_dssp             CBCSSSCSBCCGGGCCCSS-----SSCCCGGGC
T ss_pred             CcccccCCccccHHHhhhh-----HHHHhhccC
Confidence            4799999999999998766     999999998

>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 5, Enigma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=3.8e-07  Score=48.94  Aligned_cols=29  Identities=31%  Similarity=0.717  Sum_probs=23.5

Q ss_pred             CCcccccccccccCCCeEEEEeccCCCcccCccCc
Q psy15163         70 SGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCF  104 (176)
Q Consensus        70 ~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf  104 (176)
                      ..+.|+.|+++|. +..+ .|.    |+.||++||
T Consensus        17 r~P~C~~C~~pI~-g~~v-tAl----gk~WHPEhF   45 (45)
T d2dara2          17 RTPMCAHCNQVIR-GPFL-VAL----GKSWHPEEF   45 (45)
T ss_dssp             CCCBBSSSCCBCC-SCEE-EET----TEEECTTTC
T ss_pred             CCeeccccCCccc-Ccee-eec----CCccCcCCC
Confidence            3458999999998 6555 554    999999998

>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Rhombotin-2 (Lmo2)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.17  E-value=4.3e-07  Score=44.45  Aligned_cols=27  Identities=19%  Similarity=0.283  Sum_probs=24.8

Q ss_pred             ccccccccccccCceEEeCCCccccCC
Q psy15163        138 PRCHACDELIFVNEYTLAENKTFHVKH  164 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~~a~~~~~H~~C  164 (176)
                      ..|++|+++|.++-++.|+++.||.+|
T Consensus         4 ~~CaGC~~~I~DRflL~a~Dr~WH~~C   30 (30)
T d1j2oa1           4 LTCGGCQQNIGDRYFLKAIDQYWHEDC   30 (30)
T ss_dssp             BCBSSSCSCBCSSEEEECSSSEECTTT
T ss_pred             cccCCCCCcchHHHHHHHHHHHHhcCC
Confidence            579999999988877889999999988

>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=98.15  E-value=5.7e-07  Score=43.12  Aligned_cols=30  Identities=30%  Similarity=0.670  Sum_probs=28.1

Q ss_pred             cccccCccccCCCceeeeCCcccCHhHHhh
Q psy15163        104 FVCSTCDELLVDLMYFHYKGNVYCLRDYAT  133 (176)
Q Consensus       104 f~C~~C~~~l~~~~~~~~~g~~yC~~~y~~  133 (176)
                      |+|..|++.|.++....++|.+||+.||.+
T Consensus         1 frca~cgk~lestt~adkdgeiyck~cyak   30 (31)
T d1ibia2           1 FRCAKCGKSLESTTLTEKEGEIYCKGCYAK   30 (31)
T ss_dssp             EECSSSCCEECSSCSEEETTEEECHHHHHH
T ss_pred             CccccccCccccceeeccCCcEEEeeeeec
Confidence            789999999999999999999999999964

>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=4.5e-07  Score=44.29  Aligned_cols=28  Identities=21%  Similarity=0.539  Sum_probs=25.1

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCc
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCF  104 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf  104 (176)
                      ..|++|+++++..|.+...     |+.||+.|+
T Consensus         3 ~~CprC~K~VYfaEk~~~l-----gk~WHk~Cl   30 (30)
T d2cu8a1           3 SKCPKCDKTVYFAEKVSSL-----GKDWHKFCL   30 (30)
T ss_dssp             CBCTTTCCBCCTTTEEEET-----TEEEETTTC
T ss_pred             CcCCCCCCceeeHHhhccC-----CcccccccC
Confidence            4899999999999999776     899999985

>d2dara1 g.39.1.3 (A:53-84) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 5, Enigma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=7.1e-07  Score=43.85  Aligned_cols=32  Identities=22%  Similarity=0.600  Sum_probs=28.7

Q ss_pred             ccccCccccCCCceeeeCCcccCHhHHhhCCC
Q psy15163        105 VCSTCDELLVDLMYFHYKGNVYCLRDYATMLD  136 (176)
Q Consensus       105 ~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~  136 (176)
                      .|..|+.+|.+..|.+.+|++||+.||.+.|+
T Consensus         1 nCa~C~~sL~d~gFVEE~g~lYCe~Cye~ffA   32 (32)
T d2dara1           1 NCAHCKNTMAYIGFVEEKGALYCELCYEKFFA   32 (32)
T ss_dssp             BCSSSCCBCSSSCBEESSSCEECHHHHHHHTS
T ss_pred             CcccccccHhhcceeeecCcEeHHHHHHHhcC
Confidence            37899999999999999999999999987663

>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=8.2e-07  Score=43.85  Aligned_cols=29  Identities=28%  Similarity=0.815  Sum_probs=27.2

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCc
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCF  104 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf  104 (176)
                      +.|++|++.|.+.|+|+.+.    +..||..||
T Consensus         3 g~Ca~C~~~I~~~e~VmRA~----~~VyHl~CF   31 (31)
T d1rutx3           3 GACSACGQSIPASELVMRAQ----GNVYHLKCF   31 (31)
T ss_dssp             EECTTTCCEECTTSEEEEET----TEEECGGGC
T ss_pred             cccccccCcCChhHhheecc----cceeeeccC
Confidence            47999999999999999998    899999998

>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.06  E-value=5.9e-07  Score=52.25  Aligned_cols=35  Identities=20%  Similarity=0.443  Sum_probs=31.8

Q ss_pred             ccccCccccCCCceeeeCCcccCHhHHhhCCCcccc
Q psy15163        105 VCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRC  140 (176)
Q Consensus       105 ~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C  140 (176)
                      .|..|++.|.......+++.+||+.||.++|+ |+=
T Consensus         1 ~C~~C~K~LdS~~~~eh~~e~YCk~CY~k~fG-PkG   35 (65)
T d1b8ta2           1 LCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG-PKG   35 (65)
T ss_dssp             BCTTTCCBCCSSSEEEETTEEEEHHHHHHHHS-CCC
T ss_pred             CchhcCCccCCCccccCCCcccchhhhccccC-CCc
Confidence            38899999999999999999999999999999 763

>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 5, FHL-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=6.7e-07  Score=42.73  Aligned_cols=26  Identities=23%  Similarity=0.537  Sum_probs=22.6

Q ss_pred             cccccccccc---CceEEeCCCccccCCe
Q psy15163        140 CHACDELIFV---NEYTLAENKTFHVKHF  165 (176)
Q Consensus       140 C~~C~~~I~~---~~~~~a~~~~~H~~CF  165 (176)
                      |..|.+||.+   ..+|.+.++.||.+||
T Consensus         1 C~~C~kPItg~gG~k~isFedR~WH~~CF   29 (29)
T d1x68a1           1 CVACSKPISGLTGAKFICFQDSQWHSECF   29 (29)
T ss_dssp             CTTTCCCCCTTTTCCEEEETTEEEEGGGC
T ss_pred             CccccccccccCCceEEEeehhhcccccC
Confidence            7789999974   3588999999999998

>d1zfoa_ g.39.1.4 (A:) LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LASP-1
domain: LASP-1
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.03  E-value=5.8e-07  Score=43.29  Aligned_cols=28  Identities=25%  Similarity=0.632  Sum_probs=25.5

Q ss_pred             ccccccccccccCceEEeCCCccccCCe
Q psy15163        138 PRCHACDELIFVNEYTLAENKTFHVKHF  165 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF  165 (176)
                      +.|++|++.+.+.+-+.-+++.||..||
T Consensus         3 ~~CaRC~k~VYp~Ekl~ClDk~WHK~CF   30 (30)
T d1zfoa_           3 PNCARCGKIVYPTEKVNCLDKFWHKACF   30 (30)
T ss_dssp             CBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred             CcccccCCccccHHHhhhhHHHHhhccC
Confidence            7899999999887777799999999998

>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.02  E-value=7.8e-07  Score=47.95  Aligned_cols=29  Identities=31%  Similarity=0.806  Sum_probs=25.6

Q ss_pred             CcccccccccccCCCeEEEEeccCCCcccCccCc
Q psy15163         71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCF  104 (176)
Q Consensus        71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf  104 (176)
                      ...|..|++.++..|.+...     |+.||+.||
T Consensus        15 ~~kC~~C~k~VY~~E~~~~~-----g~~~Hk~CF   43 (43)
T d1b8ta3          15 SDGCPRCGQAVYAAEKVIGA-----GKSWHKSCF   43 (43)
T ss_dssp             CEECTTTSCEECSSSCEEET-----TEEECTTTC
T ss_pred             CCcCccCCCEeeHHHHhhcC-----CCccccCCC
Confidence            35899999999999998654     999999998

>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 3, abLIM-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.1e-06  Score=44.10  Aligned_cols=28  Identities=29%  Similarity=0.814  Sum_probs=25.0

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCc
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCF  104 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf  104 (176)
                      ..|++|++.|..++.+++.     ++.||.+||
T Consensus         9 ~~CagCg~eik~gQaL~AL-----dkqWH~~CF   36 (36)
T d2dj7a2           9 SHCAGCKEEIKHGQSLLAL-----DKQWHVSCF   36 (36)
T ss_dssp             SCCTTTCCCCSSSCCEEET-----TEEECTTTC
T ss_pred             ccccccchhhhCCceeeee-----ecceeeeeC
Confidence            4899999999989888766     889999998

>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Eplin, LIMA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=2.2e-06  Score=43.88  Aligned_cols=29  Identities=28%  Similarity=0.643  Sum_probs=25.3

Q ss_pred             CcccccccccccCCCeEEEEeccCCCcccCccCc
Q psy15163         71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCF  104 (176)
Q Consensus        71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf  104 (176)
                      ...|..|++.+++.|.+. ++    |+.||..||
T Consensus         7 ~~kC~~C~K~VY~~E~~~-a~----g~~~Hk~CF   35 (35)
T d2d8ya1           7 RETCVECQKTVYPMERLL-AN----QQVFHISCF   35 (35)
T ss_dssp             SCBCTTTCCBCCTTSEEE-CS----SSEEETTTC
T ss_pred             CcccccCCCEEeeeeeEe-cC----CeehhhccC
Confidence            358999999999999884 54    899999998

>d1x62a2 g.39.1.3 (A:8-42) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 1 Elfin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.7e-06  Score=42.98  Aligned_cols=27  Identities=19%  Similarity=0.448  Sum_probs=24.5

Q ss_pred             ccccccccccccCceEEeCCCccccCCe
Q psy15163        138 PRCHACDELIFVNEYTLAENKTFHVKHF  165 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF  165 (176)
                      |.|..|+..|.+ .++.++++.+||+||
T Consensus         9 p~CdkCg~GIVG-~~VK~rDk~rHPeCf   35 (35)
T d1x62a2           9 PMCDKCGTGIVG-VFVKLRDRHRHPECY   35 (35)
T ss_dssp             CCCSSSCCCCCS-SCEECSSCEECTTTT
T ss_pred             ccccccCCCcEe-EEEEeccccCCCCCC
Confidence            899999999965 678899999999998

>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2.7e-06  Score=41.72  Aligned_cols=32  Identities=28%  Similarity=0.625  Sum_probs=29.2

Q ss_pred             ccccCccccCCCceeeeCCcccCHhHHhhCCC
Q psy15163        105 VCSTCDELLVDLMYFHYKGNVYCLRDYATMLD  136 (176)
Q Consensus       105 ~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~  136 (176)
                      .|..|..||+...|..+++..||-.||+.+|+
T Consensus         1 ~C~~C~qPIGtkSFip~~~~~yCvpCYE~kfA   32 (32)
T d1wyha1           1 LCSGCEQPLGSRSFVPDKGAHYCVPCYENKFA   32 (32)
T ss_dssp             BCTTTCCBTTTSCEEEETTEEEEHHHHHHHTS
T ss_pred             CcccccCcccccccccCCCcEEEEeccccccC
Confidence            37889999999999999999999999998874

>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=3.1e-06  Score=42.79  Aligned_cols=27  Identities=30%  Similarity=0.728  Sum_probs=23.2

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCc
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCF  104 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf  104 (176)
                      .+|..|+++|.  +.++.|.    |+.||+.||
T Consensus         9 EkC~~C~~~I~--driLrA~----Gk~yHP~CF   35 (35)
T d2dloa1           9 EKCATCSQPIL--DRILRAM----GKAYHPGCF   35 (35)
T ss_dssp             CBCTTTCCBCC--SCCEEET----TEEECTTTC
T ss_pred             HHHHHhchHHH--HHHHHHh----CCCCCCCCC
Confidence            48999999997  4577776    889999998

>d1x4ka1 g.39.1.3 (A:35-66) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=2.8e-06  Score=41.78  Aligned_cols=32  Identities=13%  Similarity=0.452  Sum_probs=29.2

Q ss_pred             ccccCccccCCCceeeeCCcccCHhHHhhCCC
Q psy15163        105 VCSTCDELLVDLMYFHYKGNVYCLRDYATMLD  136 (176)
Q Consensus       105 ~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~  136 (176)
                      .|..|..+|+...|..+++..||-.||++.|+
T Consensus         1 ~C~~C~qPIGtksfipk~~~~yCvpCyE~kfA   32 (32)
T d1x4ka1           1 ICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHA   32 (32)
T ss_dssp             CCSSSCCCCCSSSEEEETTEEEEHHHHHHHTS
T ss_pred             CcccccCcccccccccCCCCceEeecchhhcC
Confidence            37889999999999999999999999998874

>d1ibia1 g.39.1.3 (A:117-144) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=97.90  E-value=1.2e-06  Score=41.35  Aligned_cols=26  Identities=27%  Similarity=0.805  Sum_probs=24.0

Q ss_pred             ccccccccccCCCeEEEEeccCCCcccCccC
Q psy15163         73 TCKQCGQEVRSGDLAVYTEKLGDQVLWHPQC  103 (176)
Q Consensus        73 ~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~C  103 (176)
                      +|.+|++.++..|+++.+     |+.||+.|
T Consensus         3 ~CpRC~~~VyaAEkviGa-----G~~WHk~C   28 (28)
T d1ibia1           3 KCSRCGDSVYAAEKVIGA-----GKPWHKNC   28 (28)
T ss_dssp             ECTTTSSEESSSSCEESS-----SSEECSSC
T ss_pred             cCcccchhHHHHHHHhcC-----CCccccCC
Confidence            799999999999999877     89999987

>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=2.6e-06  Score=41.54  Aligned_cols=28  Identities=21%  Similarity=0.522  Sum_probs=25.5

Q ss_pred             ccccccccccccCceEEeCCCccccCCe
Q psy15163        138 PRCHACDELIFVNEYTLAENKTFHVKHF  165 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF  165 (176)
                      ++|.+|++++...|-+.++|+.||..|.
T Consensus         3 ~~CprC~K~VYfaEk~~~lgk~WHk~Cl   30 (30)
T d2cu8a1           3 SKCPKCDKTVYFAEKVSSLGKDWHKFCL   30 (30)
T ss_dssp             CBCTTTCCBCCTTTEEEETTEEEETTTC
T ss_pred             CcCCCCCCceeeHHhhccCCcccccccC
Confidence            7999999999888888899999999884

>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Nedd9 interacting protein with calponin homology, NICAL (MICAL1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=1.8e-06  Score=44.39  Aligned_cols=29  Identities=24%  Similarity=0.646  Sum_probs=25.4

Q ss_pred             CcccccccccccCCCeEEEEeccCCCcccCccCc
Q psy15163         71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCF  104 (176)
Q Consensus        71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf  104 (176)
                      ...|..|++.+++.|.+ .++    ++.||+.||
T Consensus         8 ~~~C~~C~K~VY~~Erl-~a~----g~~yHk~CF   36 (36)
T d2co8a2           8 GDLCALCGEHLYVLERL-CVN----GHFFHRSCF   36 (36)
T ss_dssp             SCBCSSSCCBCCTTTBC-CBT----TBCCBTTTC
T ss_pred             CCcccccCCEEeeeeEE-Eec----CcEeccccC
Confidence            35899999999999988 455    999999998

>d1a7ia2 g.39.1.3 (A:36-67) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=97.85  E-value=3.5e-06  Score=40.92  Aligned_cols=31  Identities=23%  Similarity=0.405  Sum_probs=28.2

Q ss_pred             cccCccccCCCceeeeCCcccCHhHHhhCCC
Q psy15163        106 CSTCDELLVDLMYFHYKGNVYCLRDYATMLD  136 (176)
Q Consensus       106 C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~  136 (176)
                      |-.|++.|.++....+++.+||+.||.++|+
T Consensus         2 C~~C~K~LdStTva~h~~eiYCKsCygkkyg   32 (32)
T d1a7ia2           2 CMVCRKNLDSTTVAIHDAEVYCKSCYGKKYG   32 (32)
T ss_dssp             CSSSCCEECSSCCEEETTEEECSHHHHHHCC
T ss_pred             chhhhhccCcceeeeecceEEehhhccccCC
Confidence            6789999999999999999999999988764

>d1x64a1 g.39.1.3 (A:8-52) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 3, PDLIM3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=3.1e-06  Score=44.85  Aligned_cols=27  Identities=30%  Similarity=0.447  Sum_probs=24.6

Q ss_pred             ccccccccccccCceEEeCCCccccCCe
Q psy15163        138 PRCHACDELIFVNEYTLAENKTFHVKHF  165 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF  165 (176)
                      |.|..|+..|.+ .++.++++.+||+||
T Consensus        19 P~CdkCg~GIVG-~~VK~rDK~rHPeCf   45 (45)
T d1x64a1          19 PLCDKCGSGIVG-AVVKARDKYRHPECF   45 (45)
T ss_dssp             CBCTTTCCBCCS-CCEESSSCEECTTTC
T ss_pred             ccccccCCCcEE-EEEEeccccCCCCCC
Confidence            899999999965 678899999999998

>d2cu8a2 g.39.1.3 (A:38-70) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=6.3e-06  Score=40.51  Aligned_cols=32  Identities=25%  Similarity=0.471  Sum_probs=27.9

Q ss_pred             ccccCccccCCCceeeeCCcccCH-hHHhhCCC
Q psy15163        105 VCSTCDELLVDLMYFHYKGNVYCL-RDYATMLD  136 (176)
Q Consensus       105 ~C~~C~~~l~~~~~~~~~g~~yC~-~~y~~~~~  136 (176)
                      +|..|++.|......+++|+|||. .||.-+|+
T Consensus         1 kCekC~ktL~~G~HaEH~gkPYC~~PCY~aLFG   33 (33)
T d2cu8a2           1 KCERCSKTLTPGGHAEHDGKPFCHKPCYATLFG   33 (33)
T ss_dssp             BCSSSCCBCCTTSCEEETTEEECTTTHHHHHSC
T ss_pred             CchhcccccCCCCccccCCCcCcCcchHHhhcC
Confidence            588999999888999999999996 59987764

>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Eplin, LIMA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=5.2e-06  Score=42.41  Aligned_cols=28  Identities=29%  Similarity=0.681  Sum_probs=25.9

Q ss_pred             ccccccccccccCceEEeCCCccccCCe
Q psy15163        138 PRCHACDELIFVNEYTLAENKTFHVKHF  165 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF  165 (176)
                      ++|..|++.+..-+.+.|.|+.||..||
T Consensus         8 ~kC~~C~K~VY~~E~~~a~g~~~Hk~CF   35 (35)
T d2d8ya1           8 ETCVECQKTVYPMERLLANQQVFHISCF   35 (35)
T ss_dssp             CBCTTTCCBCCTTSEEECSSSEEETTTC
T ss_pred             cccccCCCEEeeeeeEecCCeehhhccC
Confidence            7999999999877778899999999998

>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.76  E-value=3.9e-06  Score=45.09  Aligned_cols=28  Identities=21%  Similarity=0.617  Sum_probs=25.6

Q ss_pred             ccccccccccccCceEEeCCCccccCCe
Q psy15163        138 PRCHACDELIFVNEYTLAENKTFHVKHF  165 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF  165 (176)
                      ++|..|++.+..-|-+.+.++.||..||
T Consensus        16 ~kC~~C~k~VY~~E~~~~~g~~~Hk~CF   43 (43)
T d1b8ta3          16 DGCPRCGQAVYAAEKVIGAGKSWHKSCF   43 (43)
T ss_dssp             EECTTTSCEECSSSCEEETTEEECTTTC
T ss_pred             CcCccCCCEeeHHHHhhcCCCccccCCC
Confidence            7999999999877777799999999998

>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=9.9e-06  Score=39.60  Aligned_cols=28  Identities=29%  Similarity=0.930  Sum_probs=23.4

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCc
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCF  104 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf  104 (176)
                      ..|++|+++|. +.+++.+.    ++.||..|+
T Consensus         3 ~~CaGC~~~I~-DRflL~v~----dr~WH~~CL   30 (30)
T d1rutx1           3 KRCAGCGGKIA-DRFLLYAM----DSYWHSRCL   30 (30)
T ss_dssp             CBBTTTCCBCC-CSEEEEET----TEEECGGGC
T ss_pred             cccCCCCCccc-hhhhhccc----hhhhhhhhC
Confidence            37999999999 55777776    999999984

>d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=5.7e-06  Score=38.61  Aligned_cols=26  Identities=19%  Similarity=0.488  Sum_probs=22.4

Q ss_pred             ccccccccccCce-EEeCCCccccCCe
Q psy15163        140 CHACDELIFVNEY-TLAENKTFHVKHF  165 (176)
Q Consensus       140 C~~C~~~I~~~~~-~~a~~~~~H~~CF  165 (176)
                      |..|.+.|+++.. +.+.|..||..||
T Consensus         1 C~~C~ktiMPGsrKme~kG~~WHEtCF   27 (27)
T d1x4ka2           1 CQECKKTIMPGTRKMEYKGSSWHETCF   27 (27)
T ss_dssp             BSSSCCCCCSSSCEEEETTEEEETTTT
T ss_pred             CccccccccCCceeecccCCccccccC
Confidence            7889999997753 5689999999998

>d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=7.2e-06  Score=38.25  Aligned_cols=27  Identities=26%  Similarity=0.797  Sum_probs=23.7

Q ss_pred             cccccccccCCCeEEEEeccCCCcccCccCc
Q psy15163         74 CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCF  104 (176)
Q Consensus        74 C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf  104 (176)
                      |..|.+.|.++.+.+...    |..||..||
T Consensus         1 C~~C~ktiMPGsrKme~k----G~~WHEtCF   27 (27)
T d1x4ka2           1 CQECKKTIMPGTRKMEYK----GSSWHETCF   27 (27)
T ss_dssp             BSSSCCCCCSSSCEEEET----TEEEETTTT
T ss_pred             CccccccccCCceeeccc----CCccccccC
Confidence            678999999998887775    889999998

>d1wyha2 g.39.1.3 (A:8-34) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=7.3e-06  Score=38.15  Aligned_cols=26  Identities=27%  Similarity=0.521  Sum_probs=22.2

Q ss_pred             ccccccccccCce-EEeCCCccccCCe
Q psy15163        140 CHACDELIFVNEY-TLAENKTFHVKHF  165 (176)
Q Consensus       140 C~~C~~~I~~~~~-~~a~~~~~H~~CF  165 (176)
                      |..|.+.|+++.. +...|.+||..||
T Consensus         1 C~~C~ktiMPGsrKmey~G~sWHE~CF   27 (27)
T d1wyha2           1 CSACGETVMPGSRKLEYGGQTWHEHCF   27 (27)
T ss_dssp             CSSSCCBCCSSSCEECSTTCCEETTTC
T ss_pred             CccccceecCCcccccccCcccccccC
Confidence            7889999997653 5689999999998

>d2cura1 g.39.1.3 (A:33-63) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.4e-05  Score=38.56  Aligned_cols=29  Identities=28%  Similarity=0.642  Sum_probs=26.6

Q ss_pred             ccccCccccCCCceeeeCCcccCHhHHhh
Q psy15163        105 VCSTCDELLVDLMYFHYKGNVYCLRDYAT  133 (176)
Q Consensus       105 ~C~~C~~~l~~~~~~~~~g~~yC~~~y~~  133 (176)
                      .|..|+++|.+..|-..+++.||-.||..
T Consensus         1 vC~~C~K~Lag~rFTa~eDq~yCVdCYK~   29 (31)
T d2cura1           1 VCVTCSKKLAGQRFTAVEDQYYCVDCYKN   29 (31)
T ss_dssp             BCTTTCCBCTTSCEEECSSCEEEHHHHHH
T ss_pred             CcccccchhcCceeEEecceEEEeeeecc
Confidence            48899999999999999999999999964

>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=8.4e-06  Score=39.84  Aligned_cols=26  Identities=23%  Similarity=0.560  Sum_probs=21.4

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccC
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQC  103 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~C  103 (176)
                      ++|+.|+++|. + .++.|.    ++.||+++
T Consensus         6 p~C~~C~~PI~-~-~~vtAl----gk~WHpEH   31 (31)
T d1u5sb1           6 PICGACRRPIE-G-RVVNAM----GKQWHVEH   31 (31)
T ss_dssp             CEETTTTEECC-S-CEECCT----TSBEETTT
T ss_pred             cchhhcCCchh-h-hHhhhh----ccccCCCC
Confidence            49999999998 4 466776    88999985

>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Nedd9 interacting protein with calponin homology, NICAL (MICAL1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=1.1e-05  Score=41.30  Aligned_cols=28  Identities=29%  Similarity=0.522  Sum_probs=25.3

Q ss_pred             ccccccccccccCceEEeCCCccccCCe
Q psy15163        138 PRCHACDELIFVNEYTLAENKTFHVKHF  165 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF  165 (176)
                      .+|..|++.+..-+.+.|.++.||..||
T Consensus         9 ~~C~~C~K~VY~~Erl~a~g~~yHk~CF   36 (36)
T d2co8a2           9 DLCALCGEHLYVLERLCVNGHFFHRSCF   36 (36)
T ss_dssp             CBCSSSCCBCCTTTBCCBTTBCCBTTTC
T ss_pred             CcccccCCEEeeeeEEEecCcEeccccC
Confidence            7999999999876677799999999998

>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Rhombotin-2 (Lmo2)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.57  E-value=2.3e-05  Score=38.14  Aligned_cols=27  Identities=26%  Similarity=0.650  Sum_probs=22.6

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccC
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQC  103 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~C  103 (176)
                      ..|++|+++|. +.++..+.    ++.||..|
T Consensus         4 ~~CaGC~~~I~-DRflL~a~----Dr~WH~~C   30 (30)
T d1j2oa1           4 LTCGGCQQNIG-DRYFLKAI----DQYWHEDC   30 (30)
T ss_dssp             BCBSSSCSCBC-SSEEEECS----SSEECTTT
T ss_pred             cccCCCCCcch-HHHHHHHH----HHHHhcCC
Confidence            37999999999 55777776    99999887

>d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=2.1e-05  Score=37.98  Aligned_cols=29  Identities=31%  Similarity=0.668  Sum_probs=26.7

Q ss_pred             ccccCccccCCCceeeeCCcccCHhHHhh
Q psy15163        105 VCSTCDELLVDLMYFHYKGNVYCLRDYAT  133 (176)
Q Consensus       105 ~C~~C~~~l~~~~~~~~~g~~yC~~~y~~  133 (176)
                      .|..|+..|.++.||..+.+.||+.||..
T Consensus         1 vC~tC~~kLRGqpFYAvekkayCE~CYi~   29 (32)
T d1x61a2           1 VCSTCRAQLRGQHFYAVERRAYCEGCYVA   29 (32)
T ss_dssp             BCSSSCCBCTTSCEEESSSCEEEHHHHHH
T ss_pred             CeeEeCceecCCcceEeeccccccceeee
Confidence            48899999999999999999999999964

>d1wyha2 g.39.1.3 (A:8-34) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=1.6e-05  Score=36.95  Aligned_cols=27  Identities=33%  Similarity=0.860  Sum_probs=22.4

Q ss_pred             cccccccccCCCeEEEEeccCCCcccCccCc
Q psy15163         74 CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCF  104 (176)
Q Consensus        74 C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf  104 (176)
                      |..|.+.|.++.+.+.-.    |..||..||
T Consensus         1 C~~C~ktiMPGsrKmey~----G~sWHE~CF   27 (27)
T d1wyha2           1 CSACGETVMPGSRKLEYG----GQTWHEHCF   27 (27)
T ss_dssp             CSSSCCBCCSSSCEECST----TCCEETTTC
T ss_pred             CccccceecCCccccccc----CcccccccC
Confidence            678999999888766554    889999998

>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=3.4e-05  Score=38.29  Aligned_cols=32  Identities=16%  Similarity=0.465  Sum_probs=28.0

Q ss_pred             ccccCccccCCCceee-eCCcccCHhHHhhCCC
Q psy15163        105 VCSTCDELLVDLMYFH-YKGNVYCLRDYATMLD  136 (176)
Q Consensus       105 ~C~~C~~~l~~~~~~~-~~g~~yC~~~y~~~~~  136 (176)
                      +|..|++.|.+..|-. .++++||-.+|+++|+
T Consensus         1 tCvvC~~~LDGvPFtvD~~n~i~Cv~DyHrkfA   33 (33)
T d2dloa2           1 TCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFA   33 (33)
T ss_dssp             BCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTT
T ss_pred             CeeEcCcccCCCcEEEcCCCCEeehhhhhhhcC
Confidence            4889999999988876 6889999999999874

>d1x64a2 g.39.1.3 (A:53-83) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 3, PDLIM3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=5.4e-05  Score=36.41  Aligned_cols=29  Identities=31%  Similarity=0.691  Sum_probs=26.1

Q ss_pred             ccccCccccCCCceeeeCCcccCHhHHhh
Q psy15163        105 VCSTCDELLVDLMYFHYKGNVYCLRDYAT  133 (176)
Q Consensus       105 ~C~~C~~~l~~~~~~~~~g~~yC~~~y~~  133 (176)
                      .|+.|+..|....+|..++++||+.|...
T Consensus         1 vC~dCg~NLKqrG~Ffv~~~lyCE~HAr~   29 (31)
T d1x64a2           1 VCADCNLNLKQKGYFFVEGELYCETHARA   29 (31)
T ss_dssp             CCSSSCCCTTTSCCEEETTEEECHHHHHH
T ss_pred             CccccccChhhcceEEeccEEeehhhhhc
Confidence            48999999999999999999999998754

>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=3.5e-05  Score=36.68  Aligned_cols=27  Identities=30%  Similarity=0.811  Sum_probs=20.8

Q ss_pred             ccccccccc--CCCeEEEEeccCCCcccCccCc
Q psy15163         74 CKQCGQEVR--SGDLAVYTEKLGDQVLWHPQCF  104 (176)
Q Consensus        74 C~~C~~~i~--~~~~~~~~~~~~~~~~~H~~Cf  104 (176)
                      |+.|.++|.  .+.+.+..+    ++.||.+||
T Consensus         1 C~~C~kPItg~gg~kyisFE----~R~WH~~CF   29 (29)
T d1x4la1           1 CAGCTNPISGLGGTKYISFE----ERQWHNDCF   29 (29)
T ss_dssp             BTTTTBCCCCSSSCSCEECS----SCEECTTTC
T ss_pred             CCccCCcccccCCceEEEee----cccccccCC
Confidence            778999984  234456777    899999998

>d2cupa3 g.39.1.3 (A:8-34) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=3.9e-05  Score=35.52  Aligned_cols=26  Identities=23%  Similarity=0.413  Sum_probs=21.0

Q ss_pred             ccccccccccCc-eEEeCCCccccCCe
Q psy15163        140 CHACDELIFVNE-YTLAENKTFHVKHF  165 (176)
Q Consensus       140 C~~C~~~I~~~~-~~~a~~~~~H~~CF  165 (176)
                      |..|.+||..+. -+...++.||..||
T Consensus         1 c~ecrkpigad~ke~h~knr~wh~~cf   27 (27)
T d2cupa3           1 CVECRKPIGADSKEVHYKNRFWHDTCF   27 (27)
T ss_dssp             CSSSCCBCCSSSCEEEETTEEEETTTC
T ss_pred             CccccCCcCcchHHhhccccccccccC
Confidence            778999996542 25689999999998

>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 2, abLIM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=3.5e-05  Score=37.09  Aligned_cols=26  Identities=23%  Similarity=0.448  Sum_probs=22.4

Q ss_pred             ccccccccccccCceEEeCCCccccCC
Q psy15163        138 PRCHACDELIFVNEYTLAENKTFHVKH  164 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~~a~~~~~H~~C  164 (176)
                      .-|..|.+.|.+. ++.|.++.|||.|
T Consensus         6 sgC~~C~~~ItGk-VLEAG~khYHP~C   31 (32)
T d1wiga1           6 SGCDSCEKYITGR-VLEAGEKHYHPSC   31 (32)
T ss_dssp             CSCSSSCCCCSSC-CBCCSSCCBCTTT
T ss_pred             chhhhhhhhhhhh-hhhccccccCCCC
Confidence            5799999999664 6679999999998

>d1ibia1 g.39.1.3 (A:117-144) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=97.13  E-value=9.5e-05  Score=34.71  Aligned_cols=27  Identities=19%  Similarity=0.605  Sum_probs=22.7

Q ss_pred             ccccccccccccCceEEeCCCccccCC
Q psy15163        138 PRCHACDELIFVNEYTLAENKTFHVKH  164 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~~a~~~~~H~~C  164 (176)
                      .+|.+|++.+...+-+.-.++.||..|
T Consensus         2 d~CpRC~~~VyaAEkviGaG~~WHk~C   28 (28)
T d1ibia1           2 EKCSRCGDSVYAAEKVIGAGKPWHKNC   28 (28)
T ss_dssp             EECTTTSSEESSSSCEESSSSEECSSC
T ss_pred             CcCcccchhHHHHHHHhcCCCccccCC
Confidence            589999999987665557899999987

>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 5, FHL-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=8.7e-05  Score=35.21  Aligned_cols=27  Identities=26%  Similarity=0.864  Sum_probs=20.7

Q ss_pred             ccccccccc--CCCeEEEEeccCCCcccCccCc
Q psy15163         74 CKQCGQEVR--SGDLAVYTEKLGDQVLWHPQCF  104 (176)
Q Consensus        74 C~~C~~~i~--~~~~~~~~~~~~~~~~~H~~Cf  104 (176)
                      |..|.++|.  .+.+.+..+    ++.||.+||
T Consensus         1 C~~C~kPItg~gG~k~isFe----dR~WH~~CF   29 (29)
T d1x68a1           1 CVACSKPISGLTGAKFICFQ----DSQWHSECF   29 (29)
T ss_dssp             CTTTCCCCCTTTTCCEEEET----TEEEEGGGC
T ss_pred             CccccccccccCCceEEEee----hhhcccccC
Confidence            677888884  344566777    899999998

>d1b8ta1 g.39.1.3 (A:1-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.10  E-value=9.7e-05  Score=36.21  Aligned_cols=28  Identities=25%  Similarity=0.657  Sum_probs=24.6

Q ss_pred             ccccccccccccCceEEeCCCccccCCe
Q psy15163        138 PRCHACDELIFVNEYTLAENKTFHVKHF  165 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF  165 (176)
                      .+|..|.+.+.-.+-++..+++||..||
T Consensus         8 ~kcg~c~ktvy~aeevqc~g~sfhk~cf   35 (35)
T d1b8ta1           8 KKCGVCQKAVYFAEEVQCEGSSFHKSCF   35 (35)
T ss_dssp             EECTTTCCEECSSCCEEETTEEECTTTC
T ss_pred             ceeccccceEeeeeeeeecCcccccccC
Confidence            6999999999766667799999999998

>d1x61a1 g.39.1.3 (A:8-34) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00014  Score=33.04  Aligned_cols=26  Identities=31%  Similarity=0.606  Sum_probs=21.0

Q ss_pred             ccccccccccC-ceEEeCCCccccCCe
Q psy15163        140 CHACDELIFVN-EYTLAENKTFHVKHF  165 (176)
Q Consensus       140 C~~C~~~I~~~-~~~~a~~~~~H~~CF  165 (176)
                      |.+|++-+.++ .-+.|+++.||..||
T Consensus         1 cggcgedvvgdgagvvaldrvfhvgcf   27 (27)
T d1x61a1           1 CGGCGEDVVGDGAGVVALDRVFHVGCF   27 (27)
T ss_dssp             CSSSCSCCCSSSCCEECSSSEECTTTC
T ss_pred             CCCcccccccCCcceEEEeeeEEeccC
Confidence            67899888654 346699999999998

>d1b8ta1 g.39.1.3 (A:1-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.03  E-value=0.00011  Score=35.97  Aligned_cols=29  Identities=28%  Similarity=0.594  Sum_probs=24.5

Q ss_pred             CcccccccccccCCCeEEEEeccCCCcccCccCc
Q psy15163         71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCF  104 (176)
Q Consensus        71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf  104 (176)
                      ...|+.|.+.++..|-+...     ++.||+.||
T Consensus         7 g~kcg~c~ktvy~aeevqc~-----g~sfhk~cf   35 (35)
T d1b8ta1           7 GKKCGVCQKAVYFAEEVQCE-----GSSFHKSCF   35 (35)
T ss_dssp             CEECTTTCCEECSSCCEEET-----TEEECTTTC
T ss_pred             CceeccccceEeeeeeeeec-----CcccccccC
Confidence            45899999999988877544     899999998

>d1a7ia1 g.39.1.3 (A:8-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=96.99  E-value=0.00019  Score=33.32  Aligned_cols=27  Identities=26%  Similarity=0.652  Sum_probs=23.9

Q ss_pred             cccccccccccCceEEeCCCccccCCe
Q psy15163        139 RCHACDELIFVNEYTLAENKTFHVKHF  165 (176)
Q Consensus       139 ~C~~C~~~I~~~~~~~a~~~~~H~~CF  165 (176)
                      +|.-|.+.+.-.+-++..+++||..||
T Consensus         2 kcg~c~ktvy~aeevqc~grsfhk~cf   28 (28)
T d1a7ia1           2 KCGACGRTVYHAEEVQCDGRSFHRCCF   28 (28)
T ss_dssp             BCSSSCCBCSSTTEEEETTEEEESSSE
T ss_pred             ccccccceEeeeeeeeecCceeccccC
Confidence            799999999766667899999999998

>d1x62a1 g.39.1.3 (A:43-73) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 1 Elfin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=6e-05  Score=36.34  Aligned_cols=29  Identities=24%  Similarity=0.551  Sum_probs=25.7

Q ss_pred             ccccCccccCCCceeeeCCcccCHhHHhh
Q psy15163        105 VCSTCDELLVDLMYFHYKGNVYCLRDYAT  133 (176)
Q Consensus       105 ~C~~C~~~l~~~~~~~~~g~~yC~~~y~~  133 (176)
                      .|+.|+..|....+|..++++||+.|...
T Consensus         1 vC~dCg~NLKqrG~Ffve~~lyCE~HAr~   29 (31)
T d1x62a1           1 VCTDCGTNLKQKGHFFVEDQIYCEKHARE   29 (31)
T ss_dssp             SCSSSCCCHHHHCCEESSSCEECHHHHHH
T ss_pred             CccccccChhhcceEEeccEEehhhhhhh
Confidence            48999999988889999999999998754

>d2cupa3 g.39.1.3 (A:8-34) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00022  Score=32.91  Aligned_cols=27  Identities=26%  Similarity=0.789  Sum_probs=20.9

Q ss_pred             cccccccccCCCeEEEEeccCCCcccCccCc
Q psy15163         74 CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCF  104 (176)
Q Consensus        74 C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf  104 (176)
                      |.-|.++|..+.+-+.-.    ++.||..||
T Consensus         1 c~ecrkpigad~ke~h~k----nr~wh~~cf   27 (27)
T d2cupa3           1 CVECRKPIGADSKEVHYK----NRFWHDTCF   27 (27)
T ss_dssp             CSSSCCBCCSSSCEEEET----TEEEETTTC
T ss_pred             CccccCCcCcchHHhhcc----ccccccccC
Confidence            677999998666555543    889999998

>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 2, abLIM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00033  Score=36.51  Aligned_cols=33  Identities=24%  Similarity=0.529  Sum_probs=24.8

Q ss_pred             CCCCccCCCCCcccccccccccCCCeEEEEeccCCCcccCccC
Q psy15163         61 CGNKLTQPRSGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQC  103 (176)
Q Consensus        61 ~~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~C  103 (176)
                      +|..+...    +|..|.+-|. ++.+.+.     ++.||++|
T Consensus         9 DYq~~fG~----~C~~C~~~It-G~V~~Ag-----~~~yHP~C   41 (41)
T d1v6ga1           9 DYQRLYGT----RCFSCDQFIE-GEVVSAL-----GKTYHPDC   41 (41)
T ss_dssp             CGGGSCCC----BCTTTCCBCC-SCCEEET-----TEEECTTT
T ss_pred             cHHHHhCc----ccccccCEee-eeeeEec-----CcccCCCC
Confidence            34555554    9999999997 7766544     88999987

>d1a7ia1 g.39.1.3 (A:8-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=96.87  E-value=0.0002  Score=33.28  Aligned_cols=27  Identities=26%  Similarity=0.610  Sum_probs=23.3

Q ss_pred             ccccccccccCCCeEEEEeccCCCcccCccCc
Q psy15163         73 TCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCF  104 (176)
Q Consensus        73 ~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf  104 (176)
                      .|+.|.+.++..|-+...     |+.||+.||
T Consensus         2 kcg~c~ktvy~aeevqc~-----grsfhk~cf   28 (28)
T d1a7ia1           2 KCGACGRTVYHAEEVQCD-----GRSFHRCCF   28 (28)
T ss_dssp             BCSSSCCBCSSTTEEEET-----TEEEESSSE
T ss_pred             ccccccceEeeeeeeeec-----CceeccccC
Confidence            699999999988877544     899999997

>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00035  Score=33.20  Aligned_cols=32  Identities=22%  Similarity=0.532  Sum_probs=28.4

Q ss_pred             ccccCccccCCCceeeeCCcccCHhHHhhCCC
Q psy15163        105 VCSTCDELLVDLMYFHYKGNVYCLRDYATMLD  136 (176)
Q Consensus       105 ~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~  136 (176)
                      +|+.|...++...|+.+....||-.|.+.+|+
T Consensus         1 tcs~ckq~igsgsffpkg~d~ycvtche~kfa   32 (32)
T d1x63a2           1 TCSNCKQVIGTGSFFPKGEDFYCVTCHETKFA   32 (32)
T ss_dssp             CCSSSCCCCTTSCEEEETTEEEEHHHHHHHTS
T ss_pred             CcchhhhhcccccccCCCCcEEEEEeeccccC
Confidence            48899999998899999999999999987763

>d1g47a1 g.39.1.3 (A:1-35) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00039  Score=34.41  Aligned_cols=30  Identities=27%  Similarity=0.622  Sum_probs=26.0

Q ss_pred             CCcccccccccccCCCeEEEEeccCCCcccCccC
Q psy15163         70 SGKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQC  103 (176)
Q Consensus        70 ~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~C  103 (176)
                      ....|.+|+..+.+.|+++...    |..||..|
T Consensus         6 ~~~~C~RC~~gF~p~EkiVNSn----GEl~H~qC   35 (35)
T d1g47a1           6 ASATCERCKGGFAPAEKIVNSN----GELYHEQC   35 (35)
T ss_dssp             CCCBCSSSCCBCCSTTTCEEET----TEEECTTT
T ss_pred             HHHHHHHHccCCCchHHhhcCC----CccccccC
Confidence            3448999999999999998887    88999987

>d1rutx2 g.39.1.3 (X:49-82) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.78  E-value=0.0002  Score=35.23  Aligned_cols=32  Identities=25%  Similarity=0.659  Sum_probs=26.6

Q ss_pred             ccccCcccc--CCCceeeeCCcccCHhHHhhCCC
Q psy15163        105 VCSTCDELL--VDLMYFHYKGNVYCLRDYATMLD  136 (176)
Q Consensus       105 ~C~~C~~~l--~~~~~~~~~g~~yC~~~y~~~~~  136 (176)
                      +|+-|+..|  .+...|.+.+.++|+.+|.++|+
T Consensus         1 KCscC~~~LgeiG~s~ytk~~mILCk~DY~rlFG   34 (34)
T d1rutx2           1 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG   34 (34)
T ss_dssp             BCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS
T ss_pred             CCcchhcChhhccchheecCCEEEEchhHHHhcC
Confidence            477788888  34688999999999999998874

>d1x62a2 g.39.1.3 (A:8-42) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 1 Elfin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00062  Score=33.50  Aligned_cols=27  Identities=30%  Similarity=0.796  Sum_probs=22.7

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccCc
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCF  104 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf  104 (176)
                      +.|.+|+..|. + .++.++    ++.+|++||
T Consensus         9 p~CdkCg~GIV-G-~~VK~r----Dk~rHPeCf   35 (35)
T d1x62a2           9 PMCDKCGTGIV-G-VFVKLR----DRHRHPECY   35 (35)
T ss_dssp             CCCSSSCCCCC-S-SCEECS----SCEECTTTT
T ss_pred             ccccccCCCcE-e-EEEEec----cccCCCCCC
Confidence            48999999998 4 355777    999999997

>d1x64a1 g.39.1.3 (A:8-52) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 3, PDLIM3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.57  E-value=0.00078  Score=35.37  Aligned_cols=28  Identities=32%  Similarity=0.784  Sum_probs=23.4

Q ss_pred             CcccccccccccCCCeEEEEeccCCCcccCccCc
Q psy15163         71 GKTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCF  104 (176)
Q Consensus        71 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf  104 (176)
                      .+.|.+|+..|. + .++.++    ++.+|++||
T Consensus        18 LP~CdkCg~GIV-G-~~VK~r----DK~rHPeCf   45 (45)
T d1x64a1          18 MPLCDKCGSGIV-G-AVVKAR----DKYRHPECF   45 (45)
T ss_dssp             CCBCTTTCCBCC-S-CCEESS----SCEECTTTC
T ss_pred             CccccccCCCcE-E-EEEEec----cccCCCCCC
Confidence            358999999998 4 355777    999999998

>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.07  E-value=0.0015  Score=31.40  Aligned_cols=27  Identities=30%  Similarity=0.645  Sum_probs=22.3

Q ss_pred             ccccCcccc-CCCceeeeCCcccCHhHH
Q psy15163        105 VCSTCDELL-VDLMYFHYKGNVYCLRDY  131 (176)
Q Consensus       105 ~C~~C~~~l-~~~~~~~~~g~~yC~~~y  131 (176)
                      +|+.|...| ++..|+..+|.+||+.+-
T Consensus         1 tC~tC~n~LVPGDRFHyvNG~lfCE~D~   28 (33)
T d1rutx4           1 TCSTCRNRLVPGDRFHYINGSLFCEHDR   28 (33)
T ss_dssp             BCTTTCCBCCTTCEEEEETTEEEEGGGC
T ss_pred             CcccccccccCCceeEEecCEEEEecCC
Confidence            478898888 666888899999998774

>d2cora2 g.39.1.3 (A:8-42) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0016  Score=32.23  Aligned_cols=27  Identities=26%  Similarity=0.554  Sum_probs=22.5

Q ss_pred             ccccccccccccCceEEeCCCccccCCe
Q psy15163        138 PRCHACDELIFVNEYTLAENKTFHVKHF  165 (176)
Q Consensus       138 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF  165 (176)
                      -.|..|...|...+++ +.+..|||.+|
T Consensus         9 ~vC~KCh~iIdd~pL~-Fr~d~YHp~HF   35 (35)
T d2cora2           9 YICQKCHAIIDEQPLI-FKNDPYHPDHF   35 (35)
T ss_dssp             CBCTTTCCBCCSCCCC-CSSSCCCTTTS
T ss_pred             HHHHHHHhhhhcCcce-ecCCCCCCCCC
Confidence            5799999999665555 89999999987

>d1g47a1 g.39.1.3 (A:1-35) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.0046  Score=30.41  Aligned_cols=27  Identities=11%  Similarity=0.298  Sum_probs=22.7

Q ss_pred             ccccccccccccC-ceEEeCCCccccCC
Q psy15163        138 PRCHACDELIFVN-EYTLAENKTFHVKH  164 (176)
Q Consensus       138 ~~C~~C~~~I~~~-~~~~a~~~~~H~~C  164 (176)
                      ..|.+|+....+. .++...|..||+.|
T Consensus         8 ~~C~RC~~gF~p~EkiVNSnGEl~H~qC   35 (35)
T d1g47a1           8 ATCERCKGGFAPAEKIVNSNGELYHEQC   35 (35)
T ss_dssp             CBCSSSCCBCCSTTTCEEETTEEECTTT
T ss_pred             HHHHHHccCCCchHHhhcCCCccccccC
Confidence            5899999988765 46779999999987

>d2cupa2 g.39.1.3 (A:35-65) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.66  E-value=0.012  Score=27.77  Aligned_cols=28  Identities=14%  Similarity=0.394  Sum_probs=24.4

Q ss_pred             ccccCccccCCCceeeeCCcccCHhHHh
Q psy15163        105 VCSTCDELLVDLMYFHYKGNVYCLRDYA  132 (176)
Q Consensus       105 ~C~~C~~~l~~~~~~~~~g~~yC~~~y~  132 (176)
                      +|..|-.+|....|..++++++|..|..
T Consensus         1 RCaKC~hpLA~E~F~aKd~kI~C~Kc~s   28 (31)
T d2cupa2           1 RCAKCLHPLANETFVAKDNKILCNKCTT   28 (31)
T ss_dssp             CCSSSCCCTTSSCCEEETTEEECHHHHT
T ss_pred             CchhhccccccCcccccCCeEeeccccc
Confidence            4778889999999999999999988864

>d1wiga2 g.39.1.3 (A:33-73) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 2, abLIM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.0052  Score=31.36  Aligned_cols=29  Identities=31%  Similarity=0.791  Sum_probs=21.8

Q ss_pred             ccccccccccCCCeEEEEeccCCCcccCccCcc
Q psy15163         73 TCKQCGQEVRSGDLAVYTEKLGDQVLWHPQCFV  105 (176)
Q Consensus        73 ~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf~  105 (176)
                      .|.+|++.+..+|-+..-.    +..||+.|-.
T Consensus         1 ~C~rC~~mF~EGEEMYLQG----s~IWHP~C~~   29 (41)
T d1wiga2           1 LCVRCGQMFAEGEEMYLQG----SSIWHPACRQ   29 (41)
T ss_dssp             CCSSSCCCCCSSCCCEEET----TEEECTTHHH
T ss_pred             CcchhhccccccceeeecC----CceeCCcccc
Confidence            4889999998887664442    6689999854

>d1wiga2 g.39.1.3 (A:33-73) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 2, abLIM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.43  E-value=0.0061  Score=31.11  Aligned_cols=26  Identities=19%  Similarity=0.416  Sum_probs=19.2

Q ss_pred             cccccccccccC-c-eEEeCCCccccCCe
Q psy15163        139 RCHACDELIFVN-E-YTLAENKTFHVKHF  165 (176)
Q Consensus       139 ~C~~C~~~I~~~-~-~~~a~~~~~H~~CF  165 (176)
                      .|++|++....+ + |+ -.+..|||.|-
T Consensus         1 ~C~rC~~mF~EGEEMYL-QGs~IWHP~C~   28 (41)
T d1wiga2           1 LCVRCGQMFAEGEEMYL-QGSSIWHPACR   28 (41)
T ss_dssp             CCSSSCCCCCSSCCCEE-ETTEEECTTHH
T ss_pred             Ccchhhccccccceeee-cCCceeCCccc
Confidence            388999988644 3 45 47889999883

>d2cora1 g.39.1.3 (A:43-73) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.24  E-value=0.021  Score=26.93  Aligned_cols=27  Identities=30%  Similarity=0.582  Sum_probs=21.9

Q ss_pred             cccCccccCCCceeeeCCcccCHhHHhh
Q psy15163        106 CSTCDELLVDLMYFHYKGNVYCLRDYAT  133 (176)
Q Consensus       106 C~~C~~~l~~~~~~~~~g~~yC~~~y~~  133 (176)
                      |..|++.|... -.+..|.+||..|..+
T Consensus         2 C~~Cgkeltad-ArEl~geLyCLpChdK   28 (31)
T d2cora1           2 CANCGKELTAD-ARELKGELYCLPCHDK   28 (31)
T ss_dssp             CSSSCCBCCTT-CEEETTEEECHHHHHT
T ss_pred             ccccccccchh-HHHhcCCEEEEecccc
Confidence            78899999773 5678899999999754

>d1x61a1 g.39.1.3 (A:8-34) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.011  Score=26.59  Aligned_cols=27  Identities=30%  Similarity=0.732  Sum_probs=18.4

Q ss_pred             cccccccccCCCeEEEEeccCCCcccCccCc
Q psy15163         74 CKQCGQEVRSGDLAVYTEKLGDQVLWHPQCF  104 (176)
Q Consensus        74 C~~C~~~i~~~~~~~~~~~~~~~~~~H~~Cf  104 (176)
                      |..|++.+.....-+.+.    ++.||..||
T Consensus         1 cggcgedvvgdgagvval----drvfhvgcf   27 (27)
T d1x61a1           1 CGGCGEDVVGDGAGVVAL----DRVFHVGCF   27 (27)
T ss_dssp             CSSSCSCCCSSSCCEECS----SSEECTTTC
T ss_pred             CCCcccccccCCcceEEE----eeeEEeccC
Confidence            677888875333333443    889999987

>d2d8xa1 g.39.1.3 (A:33-64) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.037  Score=26.32  Aligned_cols=29  Identities=24%  Similarity=0.529  Sum_probs=25.9

Q ss_pred             ccccCccccCCCceeeeCCcccCHhHHhh
Q psy15163        105 VCSTCDELLVDLMYFHYKGNVYCLRDYAT  133 (176)
Q Consensus       105 ~C~~C~~~l~~~~~~~~~g~~yC~~~y~~  133 (176)
                      +|..|...|.+..|.-..|+.+|..|..+
T Consensus         1 rC~~C~~~LAD~GFvKnagR~LCrpch~r   29 (32)
T d2d8xa1           1 RCDLCQEVLADIGFVKNAGRHLCRPCHNR   29 (32)
T ss_dssp             BCSSSCCBCSSSCCEEETTEEECHHHHHH
T ss_pred             CchHHHhHHHHhhhhhcccccccchhhhh
Confidence            58899999999999999999999999754

>d1x6aa2 g.39.1.3 (A:42-75) Lim domain kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Lim domain kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.66  E-value=0.04  Score=26.77  Aligned_cols=30  Identities=23%  Similarity=0.547  Sum_probs=22.9

Q ss_pred             cccccCccccCCC-ceee-eCCcccCHhHHhh
Q psy15163        104 FVCSTCDELLVDL-MYFH-YKGNVYCLRDYAT  133 (176)
Q Consensus       104 f~C~~C~~~l~~~-~~~~-~~g~~yC~~~y~~  133 (176)
                      |.|..|+.-+++. .|.. ...++||-.||.+
T Consensus         1 F~C~~C~~fIgdgdsyaLVerskLYCG~Cy~~   32 (34)
T d1x6aa2           1 FACMSCKVIIEDGDAYALVQHATLYCGKCHNE   32 (34)
T ss_dssp             CBCTTTCCBCCTTSCEEECSSSCEEEHHHHHH
T ss_pred             CcccccccEEecCceEEEEeeceeeeecchhc
Confidence            6788898888654 5554 5668999999975

>d1x6aa1 g.39.1.3 (A:8-41) Lim domain kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Lim domain kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.03  E-value=0.02  Score=27.96  Aligned_cols=26  Identities=23%  Similarity=0.712  Sum_probs=19.2

Q ss_pred             cccccccccccCCCeEEEEeccCCCcccCccC
Q psy15163         72 KTCKQCGQEVRSGDLAVYTEKLGDQVLWHPQC  103 (176)
Q Consensus        72 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~H~~C  103 (176)
                      ..|..|...|. +-.+ .|-    +..||++|
T Consensus         9 e~C~~C~~~it-GpvM-vAG----~~K~HPEC   34 (34)
T d1x6aa1           9 EFCHGCSLLMT-GPFM-VAG----EFKYHPEC   34 (34)
T ss_dssp             CBCTTTCCBCC-SCCB-CCT----TCCBCTTS
T ss_pred             HHhhhhHhhcc-ccee-eec----ccccCCCC
Confidence            38999999777 5444 443    67899997

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.60  E-value=0.061  Score=33.02  Aligned_cols=47  Identities=15%  Similarity=0.485  Sum_probs=29.7

Q ss_pred             cccccCccccCCCceeeeCCcccCHhHHhhCCCcccccccccccccCc
Q psy15163        104 FVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNE  151 (176)
Q Consensus       104 f~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~~~~~~C~~C~~~I~~~~  151 (176)
                      +.|..|...+..-.....=|..||..|..+.+. ..|..|+.++....
T Consensus        23 l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-~~CP~Cr~~~~~~~   69 (97)
T d1jm7b_          23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-TGCPVCYTPAWIQD   69 (97)
T ss_dssp             TSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-TBCSSSCCBCSCSS
T ss_pred             CCCccCCchhhcCceeCCCCCchhHHHHHHHHh-ccccccCCcCchhh
Confidence            556666666644221223467777777776666 78999998875443

>d1j2oa2 g.39.1.3 (A:31-63) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Rhombotin-2 (Lmo2)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.51  E-value=0.092  Score=24.94  Aligned_cols=29  Identities=28%  Similarity=0.513  Sum_probs=22.0

Q ss_pred             ccccCccccCC--CceeeeCCcccCHhHHhh
Q psy15163        105 VCSTCDELLVD--LMYFHYKGNVYCLRDYAT  133 (176)
Q Consensus       105 ~C~~C~~~l~~--~~~~~~~g~~yC~~~y~~  133 (176)
                      +|.-|...|+.  ...|.+.+.++|+.+|.+
T Consensus         2 kC~cC~cRLGEVG~tlytk~nliLCkrDYlR   32 (33)
T d1j2oa2           2 SCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR   32 (33)
T ss_dssp             CCSSSCSCCCCSSSCCCCBTTBCCCHHHHHH
T ss_pred             ccccccccccchhhHHHhhcceeeehhhhhc
Confidence            46666666643  567889999999999975

>d2cura1 g.39.1.3 (A:33-63) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.78  E-value=0.039  Score=26.13  Aligned_cols=28  Identities=18%  Similarity=0.455  Sum_probs=19.8

Q ss_pred             cccccccccccCceEEeCCCccccCCee
Q psy15163        139 RCHACDELIFVNEYTLAENKTFHVKHFC  166 (176)
Q Consensus       139 ~C~~C~~~I~~~~~~~a~~~~~H~~CF~  166 (176)
                      .|..|++.+.+.-++...++.|..+|++
T Consensus         1 vC~~C~K~Lag~rFTa~eDq~yCVdCYK   28 (31)
T d2cura1           1 VCVTCSKKLAGQRFTAVEDQYYCVDCYK   28 (31)
T ss_dssp             BCTTTCCBCTTSCEEECSSCEEEHHHHH
T ss_pred             CcccccchhcCceeEEecceEEEeeeec
Confidence            3889999996665666666666666653

>d1x68a2 g.39.1.3 (A:37-70) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 5, FHL-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.43  E-value=0.13  Score=24.42  Aligned_cols=25  Identities=20%  Similarity=0.603  Sum_probs=20.2

Q ss_pred             cccCccccCCCceeeeCCcccCHhH
Q psy15163        106 CSTCDELLVDLMYFHYKGNVYCLRD  130 (176)
Q Consensus       106 C~~C~~~l~~~~~~~~~g~~yC~~~  130 (176)
                      |..|+..|.+..|......++|..|
T Consensus         2 cgkcsvslvg~gfltq~~~i~c~~c   26 (34)
T d1x68a2           2 CGKCSVSLVGKGFLTQNKEIFCQKC   26 (34)
T ss_dssp             CTTTCCBCSSSCEEEETTEEEETTT
T ss_pred             CccceEEEEeeeeeeccCcEEehhc
Confidence            6678888988888888888888665

>d2co8a1 g.39.1.3 (A:44-76) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Nedd9 interacting protein with calponin homology, NICAL (MICAL1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.38  E-value=0.048  Score=26.11  Aligned_cols=28  Identities=32%  Similarity=0.643  Sum_probs=19.7

Q ss_pred             ccccCccccCCCce--eeeCCcccCHhHHh
Q psy15163        105 VCSTCDELLVDLMY--FHYKGNVYCLRDYA  132 (176)
Q Consensus       105 ~C~~C~~~l~~~~~--~~~~g~~yC~~~y~  132 (176)
                      +|..|...|....|  +..+|..||..+..
T Consensus         1 rC~~CeatL~pG~Y~qhp~dghfyc~~hlp   30 (33)
T d2co8a1           1 RCHTCEATLWPGGYEQHPGDGHFYCLQHLP   30 (33)
T ss_dssp             BCSSSCCBCCTTSEECCTTTCCCEETTTCC
T ss_pred             CceeeeeEEccCcccCCCCCceEeeeeccC
Confidence            46778888855444  45788999988764

>d1x4la2 g.39.1.3 (A:37-66) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.73  E-value=0.43  Score=21.82  Aligned_cols=27  Identities=19%  Similarity=0.422  Sum_probs=21.6

Q ss_pred             cccCccccCCCceeeeCCcccCHhHHh
Q psy15163        106 CSTCDELLVDLMYFHYKGNVYCLRDYA  132 (176)
Q Consensus       106 C~~C~~~l~~~~~~~~~g~~yC~~~y~  132 (176)
                      |..|+..|.+..|....+.++|..|-.
T Consensus         2 c~kcsvslvgrgflterddilc~dcgk   28 (30)
T d1x4la2           2 CKKCSLSLVGRGFLTERDDILCPDCGK   28 (30)
T ss_dssp             CSSSCCBCTTSCCEECSSSEECHHHHH
T ss_pred             cceeeEEEEeeeccccccceeccccCc
Confidence            667888898888888777888988753

>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.59  E-value=0.12  Score=24.99  Aligned_cols=27  Identities=19%  Similarity=0.498  Sum_probs=22.2

Q ss_pred             cccccccccccCceEEeCCCccccCCe
Q psy15163        139 RCHACDELIFVNEYTLAENKTFHVKHF  165 (176)
Q Consensus       139 ~C~~C~~~I~~~~~~~a~~~~~H~~CF  165 (176)
                      .|..|.+++.+.-++.-.++.|..+||
T Consensus         1 ~C~~C~~~L~GQry~~rd~~PyC~~Cf   27 (32)
T d2d8za2           1 VCTACRKQLSGQRFTARDDFAYCLNCF   27 (32)
T ss_dssp             BCSSSCCBCTTSCCEESSSSEECHHHH
T ss_pred             CcccCCccccCceeeecCCCeehHHhh
Confidence            388899999887788778888887776

>d1v6ga2 g.39.1.3 (A:42-81) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 2, abLIM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.36  E-value=0.49  Score=23.50  Aligned_cols=12  Identities=33%  Similarity=0.794  Sum_probs=6.1

Q ss_pred             cccccCccccCC
Q psy15163        104 FVCSTCDELLVD  115 (176)
Q Consensus       104 f~C~~C~~~l~~  115 (176)
                      |+|..|.+++..
T Consensus         1 FvC~vCr~pFP~   12 (40)
T d1v6ga2           1 FVCAVCRLPFPP   12 (40)
T ss_dssp             SSCSSSCCCCCS
T ss_pred             CcccccCCCCCC
Confidence            455555555533

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.31  E-value=0.21  Score=27.22  Aligned_cols=49  Identities=6%  Similarity=0.044  Sum_probs=33.1

Q ss_pred             ccccCccccCCCceee-eCCcccCHhHHhhCCCc-ccccccccccccCceEE
Q psy15163        105 VCSTCDELLVDLMYFH-YKGNVYCLRDYATMLDI-PRCHACDELIFVNEYTL  154 (176)
Q Consensus       105 ~C~~C~~~l~~~~~~~-~~g~~yC~~~y~~~~~~-~~C~~C~~~I~~~~~~~  154 (176)
                      .|..|...+.+ .... ..|..||+.|-.+-+.. ..|..|++++...+++.
T Consensus         2 ~C~Ic~~~~~~-Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~dLip   52 (56)
T d2baya1           2 LCAISGKVPRR-PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE   52 (56)
T ss_dssp             CCTTTCSCCSS-EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEE
T ss_pred             CCccCCchHHh-cCccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHhcee
Confidence            46777777654 3444 57899998776432211 58999999997766664

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.26  E-value=0.63  Score=27.03  Aligned_cols=50  Identities=12%  Similarity=0.096  Sum_probs=36.5

Q ss_pred             ccCcccccCccccCCCceeeeCCcccCHhHHhhC---CCcccccccccccccCce
Q psy15163        101 PQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATM---LDIPRCHACDELIFVNEY  152 (176)
Q Consensus       101 ~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~~y~~~---~~~~~C~~C~~~I~~~~~  152 (176)
                      ++-|.|..|...+.. .....-|..||..|-.+.   .. ..|..|+.+|....+
T Consensus         5 P~~l~CpIc~~l~~d-Pv~~~cGhtfc~~ci~~~l~~~~-~~cP~c~~~l~~~~l   57 (80)
T d2c2la2           5 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVG-HFNPVTRSPLTQEQL   57 (80)
T ss_dssp             CSTTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHHHTC-SSCTTTCCCCCGGGC
T ss_pred             CccccCcCcCchhhh-hcccCCcCeecHHHHHHHHhcCC-ccCCCcccccccccc
Confidence            567889999888866 455677889998775443   34 579999998865544