Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 68
PRK00077 425
PRK00077, eno, enolase; Provisional
4e-18 pfam03952 132
pfam03952, Enolase_N, Enolase, N-terminal domain
2e-16 COG0148 423
COG0148, Eno, Enolase [Carbohydrate transport and
1e-15 cd03313 408
cd03313, enolase, Enolase: Enolases are homodimeri
2e-15 TIGR01060 425
TIGR01060, eno, phosphopyruvate hydratase
4e-13 PLN00191 457
PLN00191, PLN00191, enolase
3e-08 PTZ00081 439
PTZ00081, PTZ00081, enolase; Provisional
5e-07 PRK08350 341
PRK08350, PRK08350, hypothetical protein; Provisio
1e-06
>gnl|CDD|234617 PRK00077, eno, enolase; Provisional
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Score = 75.5 bits (187), Expect = 4e-18
Identities = 27/63 (42%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 8 ESEISEAIMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPLY 65
EI+ A++G + +Q +D + L + NKS+ NA+L VS+A+AKA+++ LGLPLY
Sbjct: 72 NEEIAPALIGLDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKAAADSLGLPLY 131
Query: 66 RYI 68
RY+
Sbjct: 132 RYL 134
>gnl|CDD|202827 pfam03952, Enolase_N, Enolase, N-terminal domain
Back Show alignment and domain information
Score = 67.5 bits (166), Expect = 2e-16
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 8 ESEISEAIMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPLY 65
I+ A++G + +Q +D TL L + NKS+ NA+L+VS+A+AKA++ LGLPLY
Sbjct: 70 NEIIAPALIGMDARDQRAIDKTLIELDGTPNKSKLGANAILAVSLAVAKAAAAALGLPLY 129
Query: 66 RYI 68
RY+
Sbjct: 130 RYL 132
>gnl|CDD|223226 COG0148, Eno, Enolase [Carbohydrate transport and metabolism]
Back Show alignment and domain information
Score = 68.4 bits (168), Expect = 1e-15
Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 8 ESEISEAIMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPLY 65
I+ A++G + +Q +D L L ++NKS+ NA+L VS+A+AKA++ LG+PLY
Sbjct: 71 NEIIAPALIGLDATDQALIDSLLIELDGTENKSKLGANAILGVSLAVAKAAAASLGIPLY 130
Query: 66 RYI 68
RY+
Sbjct: 131 RYL 133
>gnl|CDD|239429 cd03313, enolase, Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways
Back Show alignment and domain information
Score = 67.9 bits (167), Expect = 2e-15
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 8 ESEISEAIMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPLY 65
I+ A++G +Q +D L L + NKS+ NA+L VS+A+AKA++ LGLPLY
Sbjct: 67 NEIIAPALIGMDVTDQRAIDKLLIELDGTPNKSKLGANAILGVSLAVAKAAAAALGLPLY 126
Query: 66 RYI 68
RY+
Sbjct: 127 RYL 129
The reaction is facilitated by the presence of metal ions. Length = 408
>gnl|CDD|213580 TIGR01060, eno, phosphopyruvate hydratase
Back Show alignment and domain information
Score = 61.2 bits (149), Expect = 4e-13
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 8 ESEISEAIMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPLY 65
I+ ++G + +Q +D L L + NKS+ NA+L VS+A+AKA+++ LGLPLY
Sbjct: 69 NEIIAPELIGMDATDQREIDQILIELDGTPNKSKLGANAILGVSMAVAKAAADSLGLPLY 128
Query: 66 RYI 68
RY+
Sbjct: 129 RYL 131
Alternate name: enolase [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 425
>gnl|CDD|215095 PLN00191, PLN00191, enolase
Back Show alignment and domain information
Score = 47.4 bits (113), Expect = 3e-08
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 11 ISEAIMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68
I+ A++G +Q +D + L + NK + NA+L+VS+A+ KA + E G+PLY++I
Sbjct: 97 IAPALIGMDPTDQTQIDNFMLELDGTPNKGKLGANAILAVSLAVCKAGAAEKGVPLYKHI 156
>gnl|CDD|240259 PTZ00081, PTZ00081, enolase; Provisional
Back Show alignment and domain information
Score = 44.3 bits (105), Expect = 5e-07
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 8/66 (12%)
Query: 11 ISEAIMGFSSNEQFFLDYTLTNL---SKNKSQFIK-----NALLSVSIAIAKASSNELGL 62
I+ A++G +Q LD + +KN+ + K NA+L+VS+A+A+A++ G+
Sbjct: 74 IAPALIGKDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSMAVARAAAAAKGV 133
Query: 63 PLYRYI 68
PLY+Y+
Sbjct: 134 PLYKYL 139
>gnl|CDD|169397 PRK08350, PRK08350, hypothetical protein; Provisional
Back Show alignment and domain information
Score = 43.3 bits (102), Expect = 1e-06
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 6/66 (9%)
Query: 9 SEISEAI----MGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGL 62
SE+ E I +GF ++EQ +D L + +++ S N L+VS+A+AKA++N +
Sbjct: 54 SEVDEIIGPELIGFDASEQELIDSYLWEIDGTEDFSHIGANTALAVSVAVAKAAANSKNM 113
Query: 63 PLYRYI 68
PLY YI
Sbjct: 114 PLYSYI 119
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
68
PF03952 132
Enolase_N: Enolase, N-terminal domain; InterPro: I
99.96 PRK08350 341
hypothetical protein; Provisional
99.94 COG0148 423
Eno Enolase [Carbohydrate transport and metabolism
99.93 PLN00191 457
enolase
99.9 KOG2670|consensus 433
99.9 PTZ00081 439
enolase; Provisional
99.89 PTZ00378 518
hypothetical protein; Provisional
99.86 cd03313 408
enolase Enolase: Enolases are homodimeric enzymes
99.85 PRK00077 425
eno enolase; Provisional
99.83 TIGR01060 425
eno phosphopyruvate hydratase. Alternate name: eno
99.81 cd03327 341
MR_like_2 Mandelate racemase (MR)-like subfamily o
98.83 PF02746 117
MR_MLE_N: Mandelate racemase / muconate lactonizin
98.79 PRK15440 394
L-rhamnonate dehydratase; Provisional
98.56 cd03314 369
MAL Methylaspartate ammonia lyase (3-methylasparta
98.54 TIGR01502 408
B_methylAsp_ase methylaspartate ammonia-lyase. Thi
98.52 cd03317 354
NAAAR N-acylamino acid racemase (NAAAR), an octame
98.52 cd03328 352
MR_like_3 Mandelate racemase (MR)-like subfamily o
98.52 PRK15072 404
bifunctional D-altronate/D-mannonate dehydratase;
98.44 cd03329 368
MR_like_4 Mandelate racemase (MR)-like subfamily o
98.42 cd03322 361
rpsA The starvation sensing protein RpsA from E.co
98.42 cd03316 357
MR_like Mandelate racemase (MR)-like subfamily of
98.35 cd03318 365
MLE Muconate Lactonizing Enzyme (MLE), an homoocta
98.3 cd03326 385
MR_like_1 Mandelate racemase (MR)-like subfamily o
98.26 TIGR02534 368
mucon_cyclo muconate and chloromuconate cycloisome
98.25 cd03325 352
D-galactonate_dehydratase D-galactonate dehydratas
98.24 PRK14017 382
galactonate dehydratase; Provisional
98.18 cd03324 415
rTSbeta_L-fuconate_dehydratase Human rTS beta is e
98.14 cd03321 355
mandelate_racemase Mandelate racemase (MR) catalyz
98.12 TIGR03247 441
glucar-dehydr glucarate dehydratase. Glucarate deh
98.07 TIGR01928 324
menC_lowGC/arch o-succinylbenzoic acid (OSB) synth
98.04 COG4948 372
L-alanine-DL-glutamate epimerase and related enzym
97.97 cd03319 316
L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat
97.92 cd03323 395
D-glucarate_dehydratase D-Glucarate dehydratase (G
97.41 PF05034 159
MAAL_N: Methylaspartate ammonia-lyase N-terminus;
96.87 PRK15129 321
L-Ala-D/L-Glu epimerase; Provisional
95.73 cd00308 229
enolase_like Enolase-superfamily, characterized by
94.57 PLN02980 1655
2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi
94.21 cd03315 265
MLE_like Muconate lactonizing enzyme (MLE) like su
90.83
>PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]
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Probab=99.96 E-value=1e-29 Score=163.56 Aligned_cols=67 Identities=39% Similarity=0.577 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHcCCChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 2 NADILLESEISEAIMGFSSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 2 ~Av~~in~~i~p~L~g~~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+||++||+.|+|+|+|++++||++||+.|+++| +|||++|+|+++|||||+|||+|+.+++|||+||
T Consensus 64 ~Av~~vn~~i~~~L~g~~~~dQ~~iD~~L~~lDgT~nk~~lGaNa~lavS~A~a~AaA~~~~~pL~~~l 132 (132)
T PF03952_consen 64 KAVENVNEIIAPALIGLDPTDQEEIDQILIELDGTPNKSRLGANAILAVSLAVAKAAAAAKGIPLYRYL 132 (132)
T ss_dssp HHHHHHHHTHHHHHTTSBTT-HHHHHHHHHHHHTSTTSTTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred hhhhhHHHHHHHHHHhcchhhHHHhCccceeccCChhhhcccchHHHHHHHHHHHHHHHHcCCChhhcC
Confidence 799999999999999999999999999999999 9999999999999999999999999999999996
In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A ....
>PRK08350 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.94 E-value=6.7e-28 Score=174.17 Aligned_cols=67 Identities=34% Similarity=0.517 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHcCCChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 2 NADILLESEISEAIMGFSSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 2 ~Av~~in~~i~p~L~g~~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+||++||+.|+|+|+|+|++||++||+.|+++| +|||++|+||++|||||+|||+|.++|+|||+||
T Consensus 51 ~AV~nVn~~Iap~LiG~d~~dQ~~ID~~mielDGT~nKs~lGaNAiLavS~A~akAaA~~~~~PLy~yl 119 (341)
T PRK08350 51 RAVSEVDEIIGPELIGFDASEQELIDSYLWEIDGTEDFSHIGANTALAVSVAVAKAAANSKNMPLYSYI 119 (341)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCccccccCchhhHHHHHHHHHHHHHHcCCcHHHHh
Confidence 799999999999999999999999999999999 9999999999999999999999999999999997
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Back Show alignment and domain information
Probab=99.93 E-value=6.8e-27 Score=171.77 Aligned_cols=67 Identities=40% Similarity=0.659 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHcCCChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 2 NADILLESEISEAIMGFSSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 2 ~Av~~in~~i~p~L~g~~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+||++||++|+|+|+|+|++||..||+.|+++| +|||++|+|+++|||||++||+|+++++|||+||
T Consensus 65 ~AV~nVn~~Iap~LiG~da~dQ~~ID~~lielDGT~Nks~lGaNailgVSlAvAkAAA~~l~~PLy~Yl 133 (423)
T COG0148 65 KAVANVNEIIAPALIGLDATDQALIDSLLIELDGTENKSKLGANAILGVSLAVAKAAAASLGIPLYRYL 133 (423)
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCCCcccccccHHHHHHHHHHHHHHHHhcCCcHHHHh
Confidence 699999999999999999999999999999999 9999999999999999999999999999999997
>PLN00191 enolase
Back Show alignment and domain information
Probab=99.90 E-value=2.7e-24 Score=159.87 Aligned_cols=67 Identities=34% Similarity=0.514 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHcCCChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 2 NADILLESEISEAIMGFSSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 2 ~Av~~in~~i~p~L~g~~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+||++||+.|+|+|+|+|++||++||+.|+++| +|||++|+||++|||||++||+|+.+|+|||+||
T Consensus 88 ~Av~~v~~~ia~~LiG~~~~dq~~iD~~l~~ldgt~nk~~lGanailavS~A~a~AaA~~~~~PLy~~l 156 (457)
T PLN00191 88 KAVKNVNEIIAPALIGMDPTDQTQIDNFMLELDGTPNKGKLGANAILAVSLAVCKAGAAEKGVPLYKHI 156 (457)
T ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHHHHHHccCCCCccccchhHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 799999999999999999999999999999999 9999999999999999999999999999999996
>KOG2670|consensus
Back Show alignment and domain information
Probab=99.90 E-value=1.5e-24 Score=157.67 Aligned_cols=67 Identities=34% Similarity=0.468 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHcCC--ChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 2 NADILLESEISEAIMGF--SSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 2 ~Av~~in~~i~p~L~g~--~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+||.+||+.|+|+|+++ |+++|+.||+.|+++| +|||++|+|||++||+|+|||+|..+++|||+||
T Consensus 64 kaV~niN~~i~pali~~~~dv~~Q~~iD~~mi~LDGTeNKsklGaNaIlgvSlavckagAa~k~vplykhi 134 (433)
T KOG2670|consen 64 KAVGNINNTIAPALIKKNLDVTDQKAIDNFMIELDGTENKSKLGANAILGVSLAVCKAGAAEKGVPLYKHI 134 (433)
T ss_pred HHHHHHHHHHHHHHHccCCChhhHHHHHHHHHhccCCcccccccchhhHHHHHHHHhhhhhhcCCcHHHHH
Confidence 79999999999999977 9999999999999999 9999999999999999999999999999999996
>PTZ00081 enolase; Provisional
Back Show alignment and domain information
Probab=99.89 E-value=7.3e-24 Score=156.85 Aligned_cols=67 Identities=37% Similarity=0.547 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHcCCChhhHHHHHHHHHh-hc--cC-----cchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 2 NADILLESEISEAIMGFSSNEQFFLDYTLTN-LS--KN-----KSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 2 ~Av~~in~~i~p~L~g~~~~~q~~iD~~L~~-ld--~n-----ks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+||++||+.|+|+|+|+|++||++||+.|++ +| +| ||++|+|+++|||||++||+|+.+|+|||+||
T Consensus 65 ~Av~~v~~~i~~~LiG~d~~dq~~iD~~l~~~ldgt~n~~~~~ks~lGanailavS~A~a~AaA~~~~~PLy~yL 139 (439)
T PTZ00081 65 KAVENVNEIIAPALIGKDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSMAVARAAAAAKGVPLYKYL 139 (439)
T ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHHHHHHhccCCcccccccccccchHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 7999999999999999999999999999999 99 88 99999999999999999999999999999996
>PTZ00378 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.86 E-value=2.3e-22 Score=151.44 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 7 LESEISEAIMGFSSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 7 in~~i~p~L~g~~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
|++.|+|+|+|++++||++||+.|+++| +|||++|+|+++|||||++||+|...++|||+||
T Consensus 111 v~~~i~p~Lig~~~~dQ~~iD~~Li~lDGT~nks~lGaNailavS~A~akAAA~~~~~PLy~yL 174 (518)
T PTZ00378 111 LQNSYFPRLLQLGARDQREFDSTLRAALSTSPLANVGSAVQWALSIVASLAAARCRSVPLFQYL 174 (518)
T ss_pred HHhhhHHHHcCCChHhHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHh
Confidence 3378999999999999999999999999 9999999999999999999999999999999996
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways
Back Show alignment and domain information
Probab=99.85 E-value=2.1e-21 Score=141.99 Aligned_cols=67 Identities=42% Similarity=0.609 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHcCCChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 2 NADILLESEISEAIMGFSSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 2 ~Av~~in~~i~p~L~g~~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+||.+|++.|+|.|+|+|+.||++||+.|+++| +||+++|+||++|||||++||+|+.+|+||||||
T Consensus 61 ~av~~i~~~iap~LiG~d~~dq~~id~~l~~~dgt~~~~~~G~nAi~avsiAl~da~A~~~g~PLy~~L 129 (408)
T cd03313 61 KAVKNVNEIIAPALIGMDVTDQRAIDKLLIELDGTPNKSKLGANAILGVSLAVAKAAAAALGLPLYRYL 129 (408)
T ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCcccccchHHHHHHHHHHHHHHHHHcCCcHHHHh
Confidence 689999999999999999999999999999999 8999999999999999999999999999999996
The reaction is facilitated by the presence of metal ions.
>PRK00077 eno enolase; Provisional
Back Show alignment and domain information
Probab=99.83 E-value=1.3e-20 Score=138.47 Aligned_cols=67 Identities=42% Similarity=0.650 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHcCCChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 2 NADILLESEISEAIMGFSSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 2 ~Av~~in~~i~p~L~g~~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+||.+|++.|+|.|+|+|+.||++||+.|.++| +|++++|+||++|||||++|++|+..|+|||+||
T Consensus 66 ~av~~v~~~iap~LiG~d~~d~~~id~~l~~ldgt~~~~~~G~nAi~avsiAl~da~ak~~g~PLy~lL 134 (425)
T PRK00077 66 KAVENVNEEIAPALIGLDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKAAADSLGLPLYRYL 134 (425)
T ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHHHHHHhhCccccCccchHHHHHHHHHHHHHHHHHhCCcHHHHh
Confidence 689999999999999999999999999999999 8999999999999999999999999999999986
>TIGR01060 eno phosphopyruvate hydratase
Back Show alignment and domain information
Probab=99.81 E-value=4.9e-20 Score=135.38 Aligned_cols=67 Identities=40% Similarity=0.597 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHcCCChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 2 NADILLESEISEAIMGFSSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 2 ~Av~~in~~i~p~L~g~~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+||.+|++.|+|.|+|+|+.||+.||+.|.++| +|++++|+||++|||||++|++|+..|+|||+||
T Consensus 63 ~av~~i~~~iap~LiG~d~~d~~~id~~l~~~d~t~~~~~~G~nAi~avs~Al~da~ak~~g~Ply~lL 131 (425)
T TIGR01060 63 KAVENVNDIIAPALIGMDAFDQREIDQIMIELDGTPNKSKLGANAILGVSMAVAKAAAKSLGLPLYRYL 131 (425)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHh
Confidence 689999999999999999999999999999998 8999999999999999999999999999999986
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2
Back Show alignment and domain information
Probab=98.83 E-value=9.5e-09 Score=73.31 Aligned_cols=66 Identities=14% Similarity=0.203 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHcCCChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 3 ADILLESEISEAIMGFSSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 3 Av~~in~~i~p~L~g~~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
++..+++.++|.|+|+|+.+.+.+.+.|.... ...+.+...|+.|++||+.++.++..|+|+|++|
T Consensus 34 ~~~~i~~~l~p~liG~dp~~~~~~~~~l~~~~~~~~~~~~~~~a~said~AlwDl~gK~~g~Pv~~LL 101 (341)
T cd03327 34 ACWIVDQHLARFLIGKDPSDIEKLWDQMYRATLAYGRKGIAMAAISAVDLALWDLLGKIRGEPVYKLL 101 (341)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhccccCCccHHHhHHHHHHHHHHHhcccccCCCHHHHc
Confidence 34567788999999999999999999987654 2223344569999999999999999999999975
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
>PF02746 MR_MLE_N: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; InterPro: IPR013341 Mandelate racemase 5
Back Show alignment and domain information
Probab=98.79 E-value=1.2e-08 Score=62.78 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhc-cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLS-KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld-~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
...+.+.+.|.++|+++.+.+.+.+.+...- . ..-|+.|+++|+.++.|+..|+|||++|
T Consensus 56 ~~~~~~~l~~~l~g~~~~~~~~~~~~~~~~~~~-----~~~a~aaid~AlwDl~gK~~g~Pl~~Ll 116 (117)
T PF02746_consen 56 ASALEDYLAPLLIGQDPDDIEDIWQELYRLIKG-----NPAAKAAIDMALWDLLGKIAGQPLYQLL 116 (117)
T ss_dssp HHHHHHTHHHHHTTSBTTGHHHHHHHHHHHTSS-----HHHHHHHHHHHHHHHHHHHHTSBHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc-----hHHHHHHHHHHHHHHHHHHcCCCHHHHc
Confidence 4567778999999999999999988776654 4 3349999999999999999999999975
1.2.2 from EC (MR) and muconate lactonizing enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the N-terminal region of these proteins.; PDB: 2OX4_F 3T9P_A 2QQ6_A 3CYJ_C 3GY1_A 3S47_B 3RRA_B 3RR1_A 3STP_A 3T8Q_A ....
>PRK15440 L-rhamnonate dehydratase; Provisional
Back Show alignment and domain information
Probab=98.56 E-value=2.1e-07 Score=68.36 Aligned_cols=64 Identities=17% Similarity=0.319 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 5 ILLESEISEAIMGFSSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 5 ~~in~~i~p~L~g~~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
..+++.++|.|+|+|+.+.+.+-+.|...- .....+..+|+.|++||+.++.++..|+|+|++|
T Consensus 83 ~~v~~~l~p~LiG~dp~~~e~l~~~m~~~~~~~g~~g~~~~A~saIDiALwDl~gK~~g~Pv~~LL 148 (394)
T PRK15440 83 FIVEKHLNRFIEGKCVSDIELIWDQMLNATLYYGRKGLVMNTISCVDLALWDLLGKVRGLPVYKLL 148 (394)
T ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHhhccccCCccHhhhHHHHHHHHHHHHhhhHcCCcHHHHc
Confidence 457788999999999999999988886542 1112233579999999999999999999999975
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid
Back Show alignment and domain information
Probab=98.54 E-value=2.3e-07 Score=67.92 Aligned_cols=65 Identities=14% Similarity=0.070 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
...|++.++|.|+|+|+.|.+.+.+.|...-.........++.|+++|+.++.++..|+|||++|
T Consensus 52 ~~~i~~~lap~LiG~d~~~i~~i~~~m~~~~~~g~~~~~aaksAIDiALwDl~gK~~g~Pv~~LL 116 (369)
T cd03314 52 IPVIEKVIAPALVGRDVANFRPAAAVLDKMRLDGNRLHTAIRYGVSQALLDAVALAQRRTMAEVL 116 (369)
T ss_pred HHHHHHhhhhHhcCCCHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHhCCcHHHHc
Confidence 34678889999999999999999888865421000111236789999999999999999999875
This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase
Back Show alignment and domain information
Probab=98.52 E-value=2.5e-07 Score=68.55 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+..|++.++|.|+|+|+++.+++-+.|.....+.. +-.-++.||++|+.++.|+..|+|+|+.|
T Consensus 89 ~~~i~~~laP~LiG~d~~~~~~l~~~~~~~~~~~~-~~~a~kaavd~AL~D~~ak~~g~pl~~LL 152 (408)
T TIGR01502 89 IPVIEKEVAPKLIGRDITNFKDMAEVFEKMTVNRN-LHTAIRYGVSQALLDAAAKTRKTTMAEVI 152 (408)
T ss_pred HHHHHHHhhHHHcCCCccCHHHHHHHHHHHhhcCc-chhHHHHHHHHHHHHHHHHHcCCcHHHHh
Confidence 46788889999999999999999888887641111 22335699999999999999999999865
This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids
Back Show alignment and domain information
Probab=98.52 E-value=2.7e-07 Score=65.72 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+..+++.+.|.|+|+++.+.+++.+.|..+..+ ..++.|+++|+.++.++..|+|+|+.|
T Consensus 60 ~~~i~~~~~p~l~g~~~~~~~~~~~~~~~~~~~-----~~a~aaid~AlwDl~gk~~g~Pv~~LL 119 (354)
T cd03317 60 WHILKDYLLPLLLGREFSHPEEVSERLAPIKGN-----NMAKAGLEMAVWDLYAKAQGQSLAQYL 119 (354)
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHHHcCCCHHHHh
Confidence 556788899999999999999998888764332 238999999999999999999999865
NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3
Back Show alignment and domain information
Probab=98.52 E-value=3.1e-07 Score=65.98 Aligned_cols=64 Identities=19% Similarity=0.227 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHhhc-cC-cchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 5 ILLESEISEAIMGFSSNEQFFLDYTLTNLS-KN-KSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 5 ~~in~~i~p~L~g~~~~~q~~iD~~L~~ld-~n-ks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
..+++.++|.|+|+|+.+.+.+-+.|.... .+ .+.....|+.|++||+.+..++..|+|+|++|
T Consensus 54 ~~i~~~~~p~liG~d~~~~~~l~~~~~~~~~~~~~~g~~~~a~aaiD~AlwDl~gK~~g~Pv~~LL 119 (352)
T cd03328 54 ALVDGLLAPVVEGRDALDPPAAWEAMQRAVRNAGRPGVAAMAISAVDIALWDLKARLLGLPLARLL 119 (352)
T ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhhhhcCCcHHHHh
Confidence 457778999999999999999988886643 11 12223468999999999999999999999875
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Back Show alignment and domain information
Probab=98.44 E-value=7.7e-07 Score=65.03 Aligned_cols=64 Identities=16% Similarity=0.243 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHhhc-cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 5 ILLESEISEAIMGFSSNEQFFLDYTLTNLS-KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 5 ~~in~~i~p~L~g~~~~~q~~iD~~L~~ld-~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
..+.+.++|.|+|+|+.+.+.+-+.|...- -........++.|+++|+.++.++..|+|||++|
T Consensus 45 ~~~~~~l~p~l~G~d~~~~e~~~~~l~~~~~~~~~~~~~~a~aaID~AlwDl~gK~~g~Pl~~LL 109 (404)
T PRK15072 45 SYLQDHVCPLLIGRDAHRIEDIWQYLYRGAYWRRGPVTMSAIAAVDMALWDIKAKAAGMPLYQLL 109 (404)
T ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHc
Confidence 346678999999999999999988886532 1112233458999999999999999999999875
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4
Back Show alignment and domain information
Probab=98.42 E-value=6.1e-07 Score=64.56 Aligned_cols=62 Identities=23% Similarity=0.287 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
...+.+.++|.|+|+|+.+.+++-+.|..... .....|+.|++||+.+..++..|+|||+.|
T Consensus 58 ~~~~~~~l~p~liG~d~~~~~~~~~~~~~~~~---~~~~~A~said~AlwDl~gk~~g~Pl~~LL 119 (368)
T cd03329 58 PALVDRFLKKVLIGQDPLDRERLWQDLWRLQR---GLTDRGLGLVDIALWDLAGKYLGLPVHRLL 119 (368)
T ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHhc---CcchhHHHHHHHHHHHHhhhhcCCcHHHHh
Confidence 34577889999999999999999888766431 123358999999999999999999999865
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
>cd03322 rpsA The starvation sensing protein RpsA from E
Back Show alignment and domain information
Probab=98.42 E-value=9.6e-07 Score=63.57 Aligned_cols=64 Identities=19% Similarity=0.264 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHhhc-cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 5 ILLESEISEAIMGFSSNEQFFLDYTLTNLS-KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 5 ~~in~~i~p~L~g~~~~~q~~iD~~L~~ld-~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
..+++.++|.|+|+|+.+.+.+-+.|.... .........++.|+++|+.++.++..|+|||+.|
T Consensus 44 ~~i~~~l~p~l~G~d~~~~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pl~~LL 108 (361)
T cd03322 44 AYLREHLKPLLIGRDANRIEDIWQYLYRGAYWRRGPVTMNAIAAVDMALWDIKGKAAGMPLYQLL 108 (361)
T ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHhHhhcCCcHHHHc
Confidence 457778999999999999999988886532 0001122348999999999999999999999875
coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily
Back Show alignment and domain information
Probab=98.35 E-value=1.2e-06 Score=62.13 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhc-cCc-chhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLS-KNK-SQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld-~nk-s~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
...+++.++|.|+|+++.+.+++.+.|.... .+. +..-..++.|+++|+.++.++..|+|+|+.|
T Consensus 53 ~~~l~~~~~p~l~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~aid~Al~Dl~gk~~g~pl~~ll 119 (357)
T cd03316 53 AAAIEDLLAPLLIGRDPLDIERLWEKLYRRLFWRGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLL 119 (357)
T ss_pred HHHHHHHHHHHccCCChHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHhcccccCCcHhhcc
Confidence 3456777999999999999999988876653 221 1112458999999999999999999999875
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway
Back Show alignment and domain information
Probab=98.30 E-value=2.3e-06 Score=61.28 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhc-cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLS-KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld-~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+..+++.+.|.|+|+|+.+.+.+-+.|.... .+. .++.|+++|+.++.++..|+|+|+.|
T Consensus 64 ~~~l~~~~~~~l~G~~~~~~~~~~~~l~~~~~~~~-----~a~said~AlwDl~gK~~g~Pl~~LL 124 (365)
T cd03318 64 KAIIDRYLAPLLIGRDATNIGAAMALLDRAVAGNL-----FAKAAIEMALLDAQGRRLGLPVSELL 124 (365)
T ss_pred HHHHHHhhHHHHcCCChHHHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHHHHhHcCCCHHHHc
Confidence 4567778999999999999888877665532 332 38999999999999999999999864
This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1
Back Show alignment and domain information
Probab=98.26 E-value=2.9e-06 Score=62.05 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCChhhH----------HHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 6 LLESEISEAIMGFSSNEQ----------FFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 6 ~in~~i~p~L~g~~~~~q----------~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
.|++.++|.|+|+|+.+. +.+=+.|.... .+. .....|+.|++||+.++.++..|+|+|+.|
T Consensus 60 ~i~~~~~p~LiG~dp~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~A~saID~ALwDl~gK~~g~Pv~~LL 133 (385)
T cd03326 60 LLRERFIPRLLAAAPDSLLDDAGGNLDPARAWAAMMRNEKPGGH-GERAVAVGALDMAVWDAVAKIAGLPLYRLL 133 (385)
T ss_pred HHHHHHHHHhcCCChHHhhhcccccCCHHHHHHHHHhcCccCCC-CHHHHHHHHHHHHHHHHhHHHcCCcHHHHc
Confidence 378889999999999966 66655554321 111 123458999999999999999999999865
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases
Back Show alignment and domain information
Probab=98.25 E-value=3.4e-06 Score=60.61 Aligned_cols=60 Identities=18% Similarity=0.296 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhc-cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLS-KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld-~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
...+++.+.|.|+|+|+.+.+.+-+.|...- .+.. ++.||++|+.++.++..|+|+|+.|
T Consensus 63 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~-----a~said~AlwDl~gK~~g~Pv~~LL 123 (368)
T TIGR02534 63 KANIDTYLAPVLVGRDATEIAAIMADLEKVVAGNRF-----AKAAVDTALHDAQARRLGVPVSELL 123 (368)
T ss_pred HHHHHHhhHHHHcCCChhhHHHHHHHHHHHhcCCch-----HHHHHHHHHHHHHHHHcCCcHHHHh
Confidence 3457778999999999988877766665532 2222 8999999999999999999999865
This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway
Back Show alignment and domain information
Probab=98.24 E-value=3.9e-06 Score=60.19 Aligned_cols=62 Identities=10% Similarity=0.143 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHhhc-cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 6 LLESEISEAIMGFSSNEQFFLDYTLTNLS-KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 6 ~in~~i~p~L~g~~~~~q~~iD~~L~~ld-~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
.++. ++|.|+|+|+.+.+.+-+.|.... .........++.|+++|+.++.++..|+|+|+.|
T Consensus 43 ~~~~-l~p~l~G~d~~~~~~~~~~~~~~~~~~~~~~~~~a~aaid~Al~Dl~gk~~g~pv~~LL 105 (352)
T cd03325 43 AVQE-LEDYLIGKDPMNIEHHWQVMYRGGFYRGGPVLMSAISGIDQALWDIKGKVLGVPVHQLL 105 (352)
T ss_pred HHHH-HHHHhCCCCHHHHHHHHHHHHHhcCcCCcchhhhHHHHHHHHHHHHhhhhcCCcHHHHc
Confidence 3454 999999999999998877774421 1111122458999999999999999999999865
D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
>PRK14017 galactonate dehydratase; Provisional
Back Show alignment and domain information
Probab=98.18 E-value=6.9e-06 Score=59.48 Aligned_cols=60 Identities=12% Similarity=0.159 Sum_probs=46.7
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHhhc-cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 9 SEISEAIMGFSSNEQFFLDYTLTNLS-KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 9 ~~i~p~L~g~~~~~q~~iD~~L~~ld-~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+.++|.|+|+|+.+.+.+-+.|.... .........|+.|++||+.++.++..|+|+|++|
T Consensus 46 ~~~~p~l~G~d~~~~~~~~~~l~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pv~~LL 106 (382)
T PRK14017 46 HELADYLIGKDPRRIEDHWQVMYRGGFYRGGPILMSAIAGIDQALWDIKGKALGVPVHELL 106 (382)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcccCCchHHhhHHHHHHHHHHHHhhhhcCCcHHHHc
Confidence 36899999999999999888875421 0111112348999999999999999999999875
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA
Back Show alignment and domain information
Probab=98.14 E-value=8.1e-06 Score=60.35 Aligned_cols=62 Identities=13% Similarity=0.066 Sum_probs=45.2
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHhhc-cC------c--chhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 7 LESEISEAIMGFSSNEQFFLDYTLTNLS-KN------K--SQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 7 in~~i~p~L~g~~~~~q~~iD~~L~~ld-~n------k--s~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+.+.++|.|+|+|+.+.+.+-+.|.... .+ . ......|+.|++||+.+..++..|+|+|+.|
T Consensus 64 ~~~~lap~liG~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saiD~AlwDl~gK~~g~Pv~~LL 134 (415)
T cd03324 64 AIEALAHLVVGRDLESIVADMGKFWRRLTSDSQLRWIGPEKGVIHLATAAVVNAVWDLWAKAEGKPLWKLL 134 (415)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhccccceecCCcccHHHHHHHHHHHHHHHHhhhhcCCcHHHHh
Confidence 4457999999999999855544443322 11 0 1112369999999999999999999999865
rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid
Back Show alignment and domain information
Probab=98.12 E-value=9.8e-06 Score=58.10 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHhhc---cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 6 LLESEISEAIMGFSSNEQFFLDYTLTNLS---KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 6 ~in~~i~p~L~g~~~~~q~~iD~~L~~ld---~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
.+.+.++|.|+|+++ +.+.+.+.+...- .+ ..+...|+.|+++|+.++.++..|+|+|++|
T Consensus 61 ~~~~~l~p~LiG~~~-~~~~~~~~~~~~~~~~~~-~~~~~~a~aaid~AlwDl~gk~~g~Pv~~Ll 124 (355)
T cd03321 61 QLLDDMAALLVGEPL-APAELERALAKRFRLLGY-TGLVRMAAAGIDMAAWDALAKVHGLPLAKLL 124 (355)
T ss_pred HHHHHHHHHhCCCCC-ChHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHHHHcCCcHHHHh
Confidence 344569999999986 5666666655432 22 1123458999999999999999999999875
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
>TIGR03247 glucar-dehydr glucarate dehydratase
Back Show alignment and domain information
Probab=98.07 E-value=1e-05 Score=60.28 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHhhc-c----Ccc------hhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 7 LESEISEAIMGFSSNEQFFLDYTLTNLS-K----NKS------QFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 7 in~~i~p~L~g~~~~~q~~iD~~L~~ld-~----nks------~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
++ .++|.|+|+|+.+.+.+-+.|...- . ..+ +...-|+.|++||+.++.++..|+|||+.|
T Consensus 61 l~-~lap~LiG~dp~~~e~i~~~m~~~~~~~~~~~~g~~~~~~~~~~~A~aAIDiALWDl~gK~~g~Pl~~LL 132 (441)
T TIGR03247 61 LE-DARPLVVGKPLGEYQNVLNDVRATFADRDAGGRGLQTFDLRTTIHAVTAIESALLDLLGQHLGVPVAALL 132 (441)
T ss_pred HH-HHHHHhcCCCHHHHHHHHHHHHHHhhcccccccCcccccchhHHHHHHHHHHHHHHHhhhHcCCCHHHHh
Confidence 44 6899999999999999988775431 0 001 012348999999999999999999999875
Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase
Back Show alignment and domain information
Probab=98.04 E-value=1.2e-05 Score=57.20 Aligned_cols=59 Identities=10% Similarity=-0.077 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
...+++.+.|.|+| ++.+.+++-+.|..... +..++.|+++|+.++.++..|+|+|+.|
T Consensus 57 ~~~i~~~~~~~l~g-~~~~~~~~~~~~~~~~~-----~~~a~said~AlwDl~gk~~g~Pl~~ll 115 (324)
T TIGR01928 57 KHIIEDFFEPNINK-EFEHPSEALELVRSLKG-----TPMAKAGLEMALWDMYHKLPSFSLAYGQ 115 (324)
T ss_pred HHHHHHHHHHHhcC-CCCCHHHHHHHHHHccC-----CcHHHHHHHHHHHHHHHhhhCCcHHHHh
Confidence 45677788999999 99998888877754322 2238999999999999999999999864
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Back Show alignment and domain information
Probab=97.97 E-value=2e-05 Score=56.66 Aligned_cols=59 Identities=17% Similarity=0.274 Sum_probs=47.9
Q ss_pred HHHHHHcCCChhhHHHHHHHHHhhc-cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 10 EISEAIMGFSSNEQFFLDYTLTNLS-KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 10 ~i~p~L~g~~~~~q~~iD~~L~~ld-~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
.+++.++|.++.+.+.+.+.|.... .+...+.-.++.||++|+.+..|+..|+|||+.|
T Consensus 64 ~~~~~l~g~d~~~i~~~~~~~~~~~~~~~~~~~~~a~sAvd~ALwDl~gK~~g~Pv~~LL 123 (372)
T COG4948 64 LLAPLLIGRDPFDIERIWQKLYRAGFARRGGITMAAISAVDIALWDLAGKALGVPVYKLL 123 (372)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHhHcCCcHHHHc
Confidence 5899999999999999666666544 3323333479999999999999999999999975
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides
Back Show alignment and domain information
Probab=97.92 E-value=3.6e-05 Score=54.12 Aligned_cols=57 Identities=30% Similarity=0.280 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCCCcccc
Q psy15211 5 ILLESEISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLYRY 67 (68)
Q Consensus 5 ~~in~~i~p~L~g~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~ 67 (68)
..++. +.|.|+|.|+. .+.+-+.|..... -+..++.|+++|+.++.++..|+|+|+.
T Consensus 59 ~~~~~-~~~~l~G~~~~-~~~~~~~l~~~~~----~~~~a~~aid~AlwDl~gk~~g~pv~~l 115 (316)
T cd03319 59 AALKS-VRPALIGGDPR-LEKLLEALQELLP----GNGAARAAVDIALWDLEAKLLGLPLYQL 115 (316)
T ss_pred HHHHH-HHHHhcCCCch-HHHHHHHHHHhcc----CChHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 34555 59999999998 8877777755421 1233899999999999999999999986
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate
Back Show alignment and domain information
Probab=97.41 E-value=0.00046 Score=50.60 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcCCCh-hhHHHHHHHHHhhc--cCcch---------hhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 3 ADILLESEISEAIMGFSS-NEQFFLDYTLTNLS--KNKSQ---------FIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 3 Av~~in~~i~p~L~g~~~-~~q~~iD~~L~~ld--~nks~---------lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
++..+. .+.|.|+|.++ .+.+.+-+.|...- ...++ +-..|+.||++|+.+..++..|+|+|+.|
T Consensus 53 ~~~~~~-~~~~~llg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LL 129 (395)
T cd03323 53 ALEALL-EAARSLVGGDVFGAYLAVLESVRVAFADRDAGGRGLQTFDLRTTVHVVTAFEVALLDLLGQALGVPVADLL 129 (395)
T ss_pred HHHHHH-HHhHHHhCCCcchhhHHHHHHHHHHHhcccccccCccccchhHHHHHHHHHHHHHHHHhhhhcCCCHHHHh
Confidence 344554 57889999887 34444333443321 22221 12568999999999999999999999865
GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
>PF05034 MAAL_N: Methylaspartate ammonia-lyase N-terminus; InterPro: IPR022665 Methylaspartate ammonia-lyase 4
Back Show alignment and domain information
Probab=96.87 E-value=0.0033 Score=41.98 Aligned_cols=58 Identities=14% Similarity=0.088 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGL 62 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~ 62 (68)
+..|++.|+|.|+|+|++..++.=..+.++ .+-.++..-.--+||.|+.+|.|+..+.
T Consensus 90 ip~ie~~v~p~L~g~d~~~Fr~~a~~~d~~-~~g~rlhtAiRYGvsQALL~A~A~a~~~ 147 (159)
T PF05034_consen 90 IPVIEKEVAPRLVGRDLSSFRENAEKFDEL-VDGKRLHTAIRYGVSQALLDAAAKAQRT 147 (159)
T ss_dssp HHHHHHHTHHHHTT-B-S-CHHHHHHHHH--ETTEE--HHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHhhccHHHcCCcHHHHHHHHHHHHhc-ccCCcchhHHHHhHHHHHHHHHHHHcCC
Confidence 456889999999999999888777766666 3445677777789999999999998775
3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the N-terminal region of methylaspartate ammonia-lyase. This domain is structurally related to PF03952 from PFAM []. This domain is associated with the catalytic domain PF07476 from PFAM. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Back Show alignment and domain information
Probab=95.73 E-value=0.023 Score=40.43 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHc-CCChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIM-GFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~-g~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
...+. .+.|.|+ |.+. +.+++.+ .+.+ ++.|+++|+.++.++..|+|+|+.|
T Consensus 59 ~~~l~-~~~~~l~~~~~~---~~~~~~~----~~~~-----a~~aid~AlwDl~gk~~~~pl~~ll 111 (321)
T PRK15129 59 MAQIM-SVVPQLEKGLTR---EALQKLL----PAGA-----ARNAVDCALWDLAARQQQQSLAQLI 111 (321)
T ss_pred HHHHH-HHHHHHhCCCCH---HHHHhhc----cChH-----HHHHHHHHHHHHHHHHcCCcHHHHc
Confidence 34453 5788887 4332 3333321 2223 8999999999999999999999864
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion
Back Show alignment and domain information
Probab=94.57 E-value=0.023 Score=38.26 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 44 ALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 44 a~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
++.|+++|+.++.++..|+|+|+++
T Consensus 43 ~~~aid~Al~Dl~gk~~~~pl~~ll 67 (229)
T cd00308 43 VISGIDMALWDLAAKALGVPLAELL 67 (229)
T ss_pred HHHHHHHHHHHHhHhHcCCcHHHHc
Confidence 4899999999999999999999864
Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Back Show alignment and domain information
Probab=94.21 E-value=0.057 Score=46.07 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=35.7
Q ss_pred HHHHHHcCCChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 10 EISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 10 ~i~p~L~g~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
.+.|.|+|++.. .+...|. . . .+.....++.|++||+.++.++..|+|+|++|
T Consensus 1011 ~l~p~l~G~~~~---~~~~~l~-~-~-~~~~~psa~~ald~ALwDl~gk~~g~Pl~~LL 1063 (1655)
T PLN02980 1011 FMLPLLKGSFSS---WIWSELG-I-P-PSSIFPSVRCGLEMAILNAIAVRHGSSLLNIL 1063 (1655)
T ss_pred hhhHhhcCcchH---HHHHHhh-c-c-ccccchHHHHHHHHHHHHHHHHHcCCcHHHHh
Confidence 457889998542 1112221 1 1 11233449999999999999999999999864
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily
Back Show alignment and domain information
Probab=90.83 E-value=0.18 Score=34.55 Aligned_cols=29 Identities=21% Similarity=0.437 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 40 FIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 40 lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
.|.-++.|+++|+.++.++..|+|+|+.+
T Consensus 40 ~GE~~~~aid~Al~Dl~gk~~g~pv~~ll 68 (265)
T cd03315 40 WAEATKAAVDMALWDLWGKRLGVPVYLLL 68 (265)
T ss_pred EeccHHHHHHHHHHHHHHHHcCCcHHHHc
Confidence 34444899999999999999999998753
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 68
d1w6ta2 137
d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoni
4e-13 d2akza2 139
d.54.1.1 (A:1-139) Enolase {Human (Homo sapiens),
1e-12 d2fyma2 139
d.54.1.1 (A:1-139) Enolase {Escherichia coli [TaxI
1e-10 d2al1a2 141
d.54.1.1 (A:1-141) Enolase {Baker's yeast (Sacchar
3e-10 d1pdza2 139
d.54.1.1 (A:1-139) Enolase {European lobster (Homa
5e-10 d2ptza2 139
d.54.1.1 (A:0-138) Enolase {Trypanosoma brucei [Ta
7e-10
>d1w6ta2 d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoniae [TaxId: 1313]} Length = 137
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: Enolase
species: Streptococcus pneumoniae [TaxId: 1313]
Score = 57.3 bits (138), Expect = 4e-13
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 1 MNADILLESEISEAIMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSN 58
A + + I+EAI+G+ +Q +D + L + NK + NA+L VSIA+A+A+++
Sbjct: 65 QKAVDNVNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARAAAD 124
Query: 59 ELGLPLYRYI 68
L +PLY Y+
Sbjct: 125 YLEIPLYSYL 134
>d2akza2 d.54.1.1 (A:1-139) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 139
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: Enolase
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Score = 55.7 bits (134), Expect = 1e-12
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 8 ESEISEAIM--GFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLP 63
S I+ A++ G S EQ LD + L ++NKS+F NA+L VS+A+ KA + E LP
Sbjct: 69 NSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAGAAERELP 128
Query: 64 LYRYI 68
LYR+I
Sbjct: 129 LYRHI 133
>d2fyma2 d.54.1.1 (A:1-139) Enolase {Escherichia coli [TaxId: 562]} Length = 139
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: Enolase
species: Escherichia coli [TaxId: 562]
Score = 50.7 bits (121), Expect = 1e-10
Identities = 24/61 (39%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 10 EISEAIMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPLYRY 67
I++A++G + +Q +D + +L ++NKS+F NA+L+VS+A AKA++ G+PLY +
Sbjct: 73 PIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEH 132
Query: 68 I 68
I
Sbjct: 133 I 133
>d2al1a2 d.54.1.1 (A:1-141) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 141
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: Enolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.0 bits (119), Expect = 3e-10
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 15 IMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68
+Q +D L +L + NKS+ NA+L VS+A ++A++ E +PLY+++
Sbjct: 78 KANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRAAAAEKNVPLYKHL 133
>d1pdza2 d.54.1.1 (A:1-139) Enolase {European lobster (Homarus vulgaris) [TaxId: 6707]} Length = 139
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: Enolase
species: European lobster (Homarus vulgaris) [TaxId: 6707]
Score = 49.2 bits (117), Expect = 5e-10
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 34 SKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68
++NKS NA+L VS+AI KA + ELG+PLYR+I
Sbjct: 99 TENKSSLGANAILGVSLAICKAGAAELGIPLYRHI 133
>d2ptza2 d.54.1.1 (A:0-138) Enolase {Trypanosoma brucei [TaxId: 5691]} Length = 139
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: Enolase
species: Trypanosoma brucei [TaxId: 5691]
Score = 48.8 bits (116), Expect = 7e-10
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 8 ESEISEAIMGFSSNEQFFLDYTLTNL--SKNKSQFIKNALLSVSIAIAKASSNELGLPLY 65
I A++G +Q LD + L + NK + NA+L S+AI+KA++ G+PLY
Sbjct: 71 NEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAAAAKGVPLY 130
Query: 66 RYI 68
RY+
Sbjct: 131 RYL 133
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 68
d1w6ta2 137
Enolase {Streptococcus pneumoniae [TaxId: 1313]}
99.95 d2ptza2 139
Enolase {Trypanosoma brucei [TaxId: 5691]}
99.94 d2fyma2 139
Enolase {Escherichia coli [TaxId: 562]}
99.94 d2akza2 139
Enolase {Human (Homo sapiens), gamma isoform [TaxI
99.93 d2al1a2 141
Enolase {Baker's yeast (Saccharomyces cerevisiae)
99.93 d1pdza2 139
Enolase {European lobster (Homarus vulgaris) [TaxI
99.93 d1jpma2 125
L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId:
99.05 d2chra2 126
Chlormuconate cycloisomerase {Alcaligenes eutrophu
98.96 d2gl5a2 122
Putative dehydratase protein STM2273 {Salmonella t
98.9 d1rvka2 126
Hypothetical protein Atu3453 {Agrobacterium tumefa
98.9 d1wufa2 126
N-acylamino acid racemase {Listeria innocua [TaxId
98.87 d1nu5a2 126
Chlormuconate cycloisomerase {Pseudomonas sp. p51
98.85 d1yeya2 139
RTS beta protein {Xanthomonas campestris pv. campe
98.72 d2gdqa2 115
Hypothetical protein YitF {Bacillus subtilis [TaxI
98.69 d1wuea2 126
N-acylamino acid racemase {Enterococcus faecalis [
98.61 d1r0ma2 127
N-acylamino acid racemase {Deinococcus radiodurans
98.61 d1jdfa2 133
D-glucarate dehydratase {Escherichia coli [TaxId:
98.54 d1sjda2 125
N-acylamino acid racemase {Amycolatopsis sp. [TaxI
98.52 d1muca2 127
Muconate-lactonizing enzyme (cis muconate cycloiso
98.47 d1bqga2 132
D-glucarate dehydratase {Pseudomonas putida [TaxId
98.45 d2mnra2 130
Mandelate racemase {Pseudomonas putida [TaxId: 303
98.36 d1tzza2 140
Hypothetical protein Bll6730 {Bradyrhizobium japon
98.34 d1jpdx2 116
L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId:
97.15 d1kcza2 160
beta-Methylaspartase {Clostridium tetanomorphum [T
96.43 d1kkoa2 160
beta-Methylaspartase {Citrobacter amalonaticus [Ta
96.15
>d1w6ta2 d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoniae [TaxId: 1313]}
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class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: Enolase
species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.95 E-value=2.8e-29 Score=160.22 Aligned_cols=67 Identities=37% Similarity=0.576 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHHcCCChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 2 NADILLESEISEAIMGFSSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 2 ~Av~~in~~i~p~L~g~~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+||++||+.|+|+|+|+|++||++||+.|+++| +|||++|+|+++|||||++||+|...++|||+||
T Consensus 66 ~Av~~in~~i~~~L~G~d~~dq~~iD~~lielDgT~nks~lGaNailAvSlA~akAaA~~~~~pLy~yi 134 (137)
T d1w6ta2 66 KAVDNVNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARAAADYLEIPLYSYL 134 (137)
T ss_dssp HHHHHHHHTHHHHHTTSBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHhHHHHcCCccccHHHHHHHHHHhcCcccccccchhHHHHHHHHHHHHHHHHcCCcHHHhh
Confidence 799999999999999999999999999999999 9999999999999999999999999999999996
>d2ptza2 d.54.1.1 (A:0-138) Enolase {Trypanosoma brucei [TaxId: 5691]}
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class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: Enolase
species: Trypanosoma brucei [TaxId: 5691]
Probab=99.94 E-value=3.9e-28 Score=154.96 Aligned_cols=67 Identities=36% Similarity=0.479 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHcCCChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 2 NADILLESEISEAIMGFSSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 2 ~Av~~in~~i~p~L~g~~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+||++||+.|.|.|+|+++.||++||+.|+++| +|||++|+|+++|||||++||+|..+++|||+||
T Consensus 65 ~Av~nin~~I~~~L~g~~~~dQ~~iD~~li~lDgt~nks~lGaNailAvS~A~akA~A~~~~~pLy~yi 133 (139)
T d2ptza2 65 QAVKNVNEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAAAAKGVPLYRYL 133 (139)
T ss_dssp HHHHHHHHTHHHHHTTCCTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHhhhccchhhcccchhhHHHHHHHHHHHhCCcchhhhhhHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 699999999999999999999999999999999 9999999999999999999999999999999996
>d2fyma2 d.54.1.1 (A:1-139) Enolase {Escherichia coli [TaxId: 562]}
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class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: Enolase
species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=3.7e-28 Score=155.08 Aligned_cols=67 Identities=37% Similarity=0.536 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHcCCChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 2 NADILLESEISEAIMGFSSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 2 ~Av~~in~~i~p~L~g~~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+||++||+.|+|+|+|+++.||++||+.|+++| +|||++|+|+++|||||++||+|..+++|||+||
T Consensus 65 ~av~~in~~i~~~Lig~~~~dq~~iD~~li~lDgT~nks~lGaNailAvS~A~akAaA~~~~~pLy~yi 133 (139)
T d2fyma2 65 KAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHI 133 (139)
T ss_dssp HHHHHHHTHHHHHHTTSBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hhhHHHHHHHHHHHhCCchhhhHHHHHHHHhccCCccccccchHHHHHHHHHHHHHHHHHcCCCHHHHh
Confidence 699999999999999999999999999999999 9999999999999999999999999999999996
>d2akza2 d.54.1.1 (A:1-139) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]}
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class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: Enolase
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Probab=99.93 E-value=2.8e-27 Score=150.90 Aligned_cols=67 Identities=45% Similarity=0.555 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHc--CCChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 2 NADILLESEISEAIM--GFSSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 2 ~Av~~in~~i~p~L~--g~~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+||++||+.|.|.|+ |+++.||++||+.|+++| +|||++|+|+++|||||++||+|...++|||+||
T Consensus 63 ~Av~~i~~~i~~~Li~~g~~~~dQ~~iD~~L~~lDgt~nks~lGaNailAvSlA~akA~A~~~~~pLy~yi 133 (139)
T d2akza2 63 KAVDHINSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAGAAERELPLYRHI 133 (139)
T ss_dssp HHHHHHHHTHHHHHHHHCCCTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred hHHHhhHHHHHHHHHhcCCChhhHHHHHHHHHHccCccchhhcChHHHHHHHHHHHHHHHHHcCCcHHHHh
Confidence 699999999999998 999999999999999999 9999999999999999999999999999999996
>d2al1a2 d.54.1.1 (A:1-141) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
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class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: Enolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=5.4e-27 Score=149.91 Aligned_cols=67 Identities=31% Similarity=0.417 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHc--CCChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 2 NADILLESEISEAIM--GFSSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 2 ~Av~~in~~i~p~L~--g~~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+||++||+.|.|.|+ |+++.||++||+.|+++| +|||++|+|+++|||||++||+|+.+++|||+||
T Consensus 63 ~av~nin~~i~~~Li~~g~~~~dq~~iD~~li~lDgT~nks~lGaNailAvS~A~akAaA~~~~~pLy~yl 133 (141)
T d2al1a2 63 HAVKNVNDVIAPAFVKANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRAAAAEKNVPLYKHL 133 (141)
T ss_dssp HHHHHHHHTHHHHHHHHTCCTTCHHHHHHHHHHHHCSTTSTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hHHHHHHHHhHHHHhhcCCchhhHHHHHHHHHHccCCcchhhhhhHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 689999999999999 899999999999999999 9999999999999999999999999999999996
>d1pdza2 d.54.1.1 (A:1-139) Enolase {European lobster (Homarus vulgaris) [TaxId: 6707]}
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class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: Enolase
species: European lobster (Homarus vulgaris) [TaxId: 6707]
Probab=99.93 E-value=7.4e-27 Score=149.26 Aligned_cols=67 Identities=42% Similarity=0.528 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHc--CCChhhHHHHHHHHHhhc--cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 2 NADILLESEISEAIM--GFSSNEQFFLDYTLTNLS--KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 2 ~Av~~in~~i~p~L~--g~~~~~q~~iD~~L~~ld--~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+||++||+.|.|+|+ |+++.||++||+.|+++| +|||++|+|+++|||||++||+|+..++|||+||
T Consensus 63 ~Av~nin~~i~~~Li~~g~~~~dq~~iD~~Li~lDgT~nks~lGaNailAvS~A~akAaA~~~~~pLy~yi 133 (139)
T d1pdza2 63 NAVKNVNDVIVPEIIKSGLKVTQQKECDEFMCKLDGTENKSSLGANAILGVSLAICKAGAAELGIPLYRHI 133 (139)
T ss_dssp HHHHHHHHTHHHHHHHHTCCTTCHHHHHHHHHHHHCSSSSTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred ceeecchhhhhHHHHhcCccccchhhhHHHHHhhcCccchhhhhhHHHHHHHHHHHHHHHHHcCCcHHHHh
Confidence 699999999999998 699999999999999999 9999999999999999999999999999999996
>d1jpma2 d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]}
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class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: L-Ala-D/L-Glu epimerase
species: Bacillus subtilis [TaxId: 1423]
Probab=99.05 E-value=1.5e-10 Score=68.99 Aligned_cols=61 Identities=23% Similarity=0.276 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHcCCChhhHHHHHHHHHhhc-cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 3 ADILLESEISEAIMGFSSNEQFFLDYTLTNLS-KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 3 Av~~in~~i~p~L~g~~~~~q~~iD~~L~~ld-~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+.+.+++.++|.|+|+++.+.+++.+.|...- .+.. |+.|++||+.++.++..|+|||++|
T Consensus 62 ~~~~i~~~~~p~l~g~~~~~~~~~~~~l~~~~~~~~~-----a~aaid~AlwDl~~K~~g~pl~~ll 123 (125)
T d1jpma2 62 IESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMS-----AKAAVEMALYDGWAQMCGLPLYQML 123 (125)
T ss_dssp HHHHHHHTHHHHHTTCBGGGHHHHHHHHHHSSSSCHH-----HHHHHHHHHHHHHHHHTTSBHHHHT
T ss_pred hHHHHHHHHHhhhcccCcccHHHHHHHhhhhccCccH-----HHHHHHHHHHHHHHHHcCCCHHHHc
Confidence 45678888999999999999999988877654 4433 8899999999999999999999976
>d2chra2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]}
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class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: Chlormuconate cycloisomerase
species: Alcaligenes eutrophus [TaxId: 106590]
Probab=98.96 E-value=4.9e-10 Score=67.11 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHcCCChhhHHHHHHHHHhhc-cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 3 ADILLESEISEAIMGFSSNEQFFLDYTLTNLS-KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 3 Av~~in~~i~p~L~g~~~~~q~~iD~~L~~ld-~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+...+++.++|.|+|+++.+.+++-+.|.... .+.. |+.|+++|+.++.|+..|+|||++|
T Consensus 63 ~~~~l~~~l~p~lig~~~~~~~~~~~~~~~~~~~~~~-----A~aaid~AlwDl~~K~~~~pl~~ll 124 (126)
T d2chra2 63 IKIIVERYLAPHLLGTDAFNVSGALQTMARAVTGNAS-----AKAAVEMALLDLKARALGVSIAELL 124 (126)
T ss_dssp HHHHHHHHTHHHHTTSCTTCHHHHHHHHHTTCSSCHH-----HHHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred HHHHHHHHhcccccccccccHHHHHHHhhhccccchH-----HHHHHHHHHHHHHHHHcCCCHHHHc
Confidence 34567888999999999999998877776543 4444 8999999999999999999999986
>d2gl5a2 d.54.1.1 (A:1-122) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: Putative dehydratase protein STM2273
species: Salmonella typhimurium [TaxId: 90371]
Probab=98.90 E-value=1.5e-09 Score=64.99 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHcCCChhhHHHHHHHHHhhc-c--CcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 3 ADILLESEISEAIMGFSSNEQFFLDYTLTNLS-K--NKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 3 Av~~in~~i~p~L~g~~~~~q~~iD~~L~~ld-~--nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
.+..+.+.++|.|+|+|+.+.+.+-+.|.... . ....+...|+.|+.+|+.++.|+..|+|||++|
T Consensus 52 ~~~~~~~~~~~~lig~~~~~~e~~~~~l~~~~~~~~~~~~~~~~a~aaid~AlwDl~~K~~~~PL~~lL 120 (122)
T d2gl5a2 52 AGVGIIRDLAPLIVGEDPLNIEKIWEFFFRKTFWGMGGGNVFYAGMSAIDIALWDIKGKYLGVPVYQLL 120 (122)
T ss_dssp HHHHHHHHHGGGTTTSCTTCHHHHHHHHHHSSSGGGSCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHT
T ss_pred HHHHHHHHHHhhhcccccchhhHHHHHHhhhcccccccCCcccchHHHHHHHHHHHHHHHhCCCHHHHc
Confidence 34556778999999999999999888876654 2 223344569999999999999999999999986
>d1rvka2 d.54.1.1 (A:1-126) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: Hypothetical protein Atu3453
species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.90 E-value=7.7e-10 Score=66.78 Aligned_cols=65 Identities=20% Similarity=0.312 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhc-cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLS-KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld-~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
.+.|++.++|.|+|+++.+.+.+.+.+.... ......-..|+.||+||+.++.|+..|+|||++|
T Consensus 59 ~~~i~~~l~~~lig~~~~~~~~~~~~~~~~~~~~~~~~~~~A~aavdiAlwDl~~K~~g~Pl~~LL 124 (126)
T d1rvka2 59 PHVIEKFVKKVLIGEDHRDRERLWQDLAHWQRGSAAQLTDRTLAVVDCALWDLAGRSLGQPVYKLI 124 (126)
T ss_dssp HHHHHHTHHHHHTTSBTTCHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHHHHHHHHHHTCBHHHHH
T ss_pred HHHHHHHHHHHHhhcCcchhhhhhhhhccccccCCcchhhHHHHHHHHHHHHHHHHHcCCCHHHHc
Confidence 3457888999999999999998887777654 3333445669999999999999999999999974
>d1wufa2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: N-acylamino acid racemase
species: Listeria innocua [TaxId: 1642]
Probab=98.87 E-value=2.6e-10 Score=68.68 Aligned_cols=61 Identities=13% Similarity=0.084 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHcCCChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 3 ADILLESEISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 3 Av~~in~~i~p~L~g~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
++..+++.+.|.|+|+++.+.+.+.+.+..+..|.. |+.|+++|+.++.++..|+|||++|
T Consensus 64 ~~~~l~~~l~p~l~g~~~~~~~~i~~~~~~~~~~~~-----A~aaid~AlwDl~~K~~~~pl~~lL 124 (126)
T d1wufa2 64 AILIIKEQLLPLLAQRKIRKPEEIQELFSWIQGNEM-----AKAAVELAVWDAFAKMEKRSLAKMI 124 (126)
T ss_dssp HHHHHHHTTHHHHHHCEESSTTHHHHHHTTSCSCHH-----HHHHHHHHHHHHHHHHTTSBHHHHT
T ss_pred hhheeeecccchhcCCCchhHHHHHHHhhhccCchH-----HHHHHHHHHHHHHHHHcCCcHHHHh
Confidence 566788889999999999999999988876644433 7899999999999999999999986
>d1nu5a2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: Chlormuconate cycloisomerase
species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=98.85 E-value=1.4e-09 Score=65.04 Aligned_cols=60 Identities=15% Similarity=0.237 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhc-cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLS-KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld-~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
...+++.+.|.|+|.|+.+.+++-+.|.... .|.. |+.|+.+|+.++.|+..|+|||++|
T Consensus 64 ~~~i~~~~~p~l~g~~~~~~~~~~~~~~~~~~~~~~-----A~aaid~AlwDl~~K~~~~pl~~ll 124 (126)
T d1nu5a2 64 KVIIDNYLAPLLVGKDASNLSQARVLMDRAVTGNLS-----AKAAIDIALHDLKARALNLSIADLI 124 (126)
T ss_dssp HHHHHHTHHHHHTTSBTTCHHHHHHHHHHHCSSCHH-----HHHHHHHHHHHHHHHHTTCBHHHHH
T ss_pred HHHHHHHhhhhhhhcCcccHHHHHHHhhhhhhccch-----HHHHHHHHHHHHHHHHcCCCHHHHc
Confidence 4567888999999999999999988887655 5545 8999999999999999999999874
>d1yeya2 d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: RTS beta protein
species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=98.72 E-value=7.8e-09 Score=63.03 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhc---------cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLS---------KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld---------~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+..+.+.++|.|+|+++.+.+.+-+.+...- .....+...|+.|+.||+.++.++..|+|||++|
T Consensus 62 ~~~~~~~l~p~liG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saIDiALWDl~gK~~~~Pl~~LL 135 (139)
T d1yeya2 62 QTAAVAALAEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFI 135 (139)
T ss_dssp HHHHHHTTHHHHTTCBHHHHHHCHHHHHHHHHTCHHHHTTCSSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHH
T ss_pred HHHHHHHHHHHhhCCCcccHHHHHHHHHHHhcccccccccCCcchHHHHHHHHHHHHHHHHHHHHcCCcHHHHh
Confidence 3446677999999999999988777665432 1223344579999999999999999999999975
>d2gdqa2 d.54.1.1 (A:4-118) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: Hypothetical protein YitF
species: Bacillus subtilis [TaxId: 1423]
Probab=98.69 E-value=1.3e-08 Score=59.89 Aligned_cols=57 Identities=14% Similarity=0.206 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 5 ILLESEISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 5 ~~in~~i~p~L~g~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
..|.+.++|.++|.|+.+.+.+.+.+... +. .|+.|+.||+.++.|+..|+|||++|
T Consensus 57 ~~i~~~l~~~l~g~~~~~~~~~~~~~~~~--~~-----~a~aaid~AlwDl~~K~~~~Pl~~lL 113 (115)
T d2gdqa2 57 VGFTKRIIPFLLGKQAGSRLSLVRTIQKW--HQ-----RAASAVSMALTEIAAKAADCSVCELW 113 (115)
T ss_dssp HHHHHTHHHHHTTSBTTCHHHHHHHHHHH--CH-----HHHHHHHHHHHHHHHHHTTSBHHHHT
T ss_pred HHHHHHHhhhhcccChhhHHHHHHHHHHh--hh-----HHHHHHHHHHHHHHHHHhCCCHHHHc
Confidence 46788899999999999998887766543 32 28999999999999999999999986
>d1wuea2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: N-acylamino acid racemase
species: Enterococcus faecalis [TaxId: 1351]
Probab=98.61 E-value=3.2e-08 Score=57.94 Aligned_cols=60 Identities=5% Similarity=0.057 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
...+...+.|.++|.++.+.+.+.+.+.....+.. |+.|+++|+.++.|+..|+|||++|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----a~aaid~AlwDl~ak~~~~pl~~lL 124 (126)
T d1wuea2 65 RFIIQQHLIPLLLTEAIEQPQEVSTIFEEVKGHWM-----GKAALETAIWDLYAKRQQKSLTEFF 124 (126)
T ss_dssp HHHHHHTHHHHHTTSCCCSTHHHHHHGGGSCSCHH-----HHHHHHHHHHHHHHHHTTSBGGGGS
T ss_pred hhhhhccccccccccccccHHHHHHHHhhccCccH-----HHHHHHHHHHHHHHHHhCCCHHHHh
Confidence 45566778899999999999999888877643333 7889999999999999999999986
>d1r0ma2 d.54.1.1 (A:6-132) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: N-acylamino acid racemase
species: Deinococcus radiodurans [TaxId: 1299]
Probab=98.61 E-value=7.9e-09 Score=60.96 Aligned_cols=60 Identities=23% Similarity=0.195 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
...+.+.+.|.+.|.++.+.+++-..+..+..+.. |..|+++|+.++.|+..++|||++|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----a~aaid~AlwDl~aK~~~~pl~~ll 125 (127)
T d1r0ma2 66 LDLLRGTFLPAILGQTFANPEAVSDALGSYRGNRM-----ARAMVEMAAWDLWARTLGVPLGTLL 125 (127)
T ss_dssp HHHHHHTHHHHHTTCEESSHHHHHHTTTTSCSCHH-----HHHHHHHHHHHHHHHHHTCBHHHHH
T ss_pred hhhhhhhcccccccCChhhHHHHhhhhcccCCchH-----HHHHHHHHHHHHHHHHhCCcHHHHc
Confidence 45677788999999999999888776665533333 8899999999999999999999974
>d1jdfa2 d.54.1.1 (A:5-137) D-glucarate dehydratase {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: D-glucarate dehydratase
species: Escherichia coli [TaxId: 562]
Probab=98.54 E-value=2.5e-07 Score=55.45 Aligned_cols=60 Identities=10% Similarity=0.088 Sum_probs=48.5
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHhhc-c-Cc---------chhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 9 SEISEAIMGFSSNEQFFLDYTLTNLS-K-NK---------SQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 9 ~~i~p~L~g~~~~~q~~iD~~L~~ld-~-nk---------s~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
+.++|.++|.++.+.+.+.+.|.... . .. .+.-..|+.|+++|+.++.++..|+|||+.|
T Consensus 62 ~~~~~~l~g~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pl~~LL 132 (133)
T d1jdfa2 62 EDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLL 132 (133)
T ss_dssp HHHHHHHTTCBGGGHHHHHHHHHHHTGGGGTTCSCSSSSCCCCHHHHHHHHHHHHHHHHHHHHTSBGGGGS
T ss_pred HhhhhhhcCCChhhHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHc
Confidence 46899999999999999988887654 1 11 1123458999999999999999999999976
>d1sjda2 d.54.1.1 (A:1-125) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: N-acylamino acid racemase
species: Amycolatopsis sp. [TaxId: 37632]
Probab=98.52 E-value=2.8e-08 Score=58.00 Aligned_cols=60 Identities=10% Similarity=0.057 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
...++..+.|.++|.++.+.+.+.+.+.....+. .|+.|++||+.++.|+..|+|||++|
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~a~aaid~AlwDl~ak~~~~Pl~~lL 123 (125)
T d1sjda2 64 EHVLRHYLIPALLAAEDITAAKVTPLLAKFKGHR-----MAKGALEMAVLDAELRAHERSFAAEL 123 (125)
T ss_dssp HHHHHHTHHHHHHHSSSCCHHHHHHHHTTSCSCH-----HHHHHHHHHHHHHHHHHTTCBHHHHH
T ss_pred hhhhhhccchhhcCCCccCHHHHHHHHHHccCCc-----HHHHHHHHHHHHHHHHHcCCcHHHHh
Confidence 4566778899999999999999988776643333 38899999999999999999999975
>d1muca2 d.54.1.1 (A:4-130) Muconate-lactonizing enzyme (cis muconate cycloisomerase) {Pseudomonas putida [TaxId: 303]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: Muconate-lactonizing enzyme (cis muconate cycloisomerase)
species: Pseudomonas putida [TaxId: 303]
Probab=98.47 E-value=1.3e-07 Score=55.05 Aligned_cols=60 Identities=20% Similarity=0.342 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhc-cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLS-KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld-~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
...+.+.+.|.+.|.++.+...+-..+.... .+.. |+.|++||+.++.|+..|+|||++|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----a~aaid~AlwDl~~K~~g~Pl~~lL 125 (127)
T d1muca2 65 KANIDAHLAPALIGLAADNINAAMLKLDKLAKGNTF-----AKSGIESALLDAQGKRLGLPVSELL 125 (127)
T ss_dssp HHHHHHTHHHHHTTSBTTCHHHHHHHHHHHCSSCHH-----HHHHHHHHHHHHHHHHHTCBHHHHT
T ss_pred HHHHHhhhcccccccchhhHHHHHHHhhhhcccchH-----HHHHHHHHHHHHHHHHcCCCHHHHc
Confidence 3456677889999999998888876666554 3333 8899999999999999999999976
>d1bqga2 d.54.1.1 (A:12-143) D-glucarate dehydratase {Pseudomonas putida [TaxId: 303]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: D-glucarate dehydratase
species: Pseudomonas putida [TaxId: 303]
Probab=98.45 E-value=3.6e-07 Score=54.74 Aligned_cols=61 Identities=13% Similarity=0.117 Sum_probs=47.9
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHhhc--cCc---------chhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 8 ESEISEAIMGFSSNEQFFLDYTLTNLS--KNK---------SQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 8 n~~i~p~L~g~~~~~q~~iD~~L~~ld--~nk---------s~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
.+.+.|.++|+++.+.+.+-+.|.+.. ... ...-..|+.|+++|+.++.++..|+|||+.|
T Consensus 60 ~~~~~~~~ig~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pl~~LL 131 (132)
T d1bqga2 60 LEDARHLLINQSIGNYQSLLNKVRNAFADRDVGGRGLQTFDLRIAVHAVTAVESALLDLLGQHLQVPVAALL 131 (132)
T ss_dssp HHTTHHHHBTCBGGGHHHHHHHHHHHTCC------------CHHHHHHHHHHHHHHHHHHHHHHTCBGGGGS
T ss_pred HHHhhhhhcCcChHHHHHHHHHHHHHhcccCcccccccccccchHHHHHHHHHHHHHHHHHHHcCCcHHHHc
Confidence 345789999999999999888887653 111 1123458999999999999999999999976
>d2mnra2 d.54.1.1 (A:3-132) Mandelate racemase {Pseudomonas putida [TaxId: 303]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: Mandelate racemase
species: Pseudomonas putida [TaxId: 303]
Probab=98.36 E-value=8e-07 Score=51.96 Aligned_cols=64 Identities=13% Similarity=0.102 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHhhc-cCcchhhHHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 5 ILLESEISEAIMGFSSNEQFFLDYTLTNLS-KNKSQFIKNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 5 ~~in~~i~p~L~g~~~~~q~~iD~~L~~ld-~nks~lGana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
..+.+.+.|.+.|.+....+..+....... .........|+.|+.+|+.++.|+..|+|||++|
T Consensus 61 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~~K~~~~Pl~~lL 125 (130)
T d2mnra2 61 KQLLDDMAAMIVNEPLAPVSLEAMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLL 125 (130)
T ss_dssp HHHHHHHHHHHTTSBSCHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHHHHhCCCHHHHh
Confidence 334456888888876655554444444333 2223334458899999999999999999999986
>d1tzza2 d.54.1.1 (A:1006-1145) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: Hypothetical protein Bll6730
species: Bradyrhizobium japonicum [TaxId: 375]
Probab=98.34 E-value=3.4e-07 Score=55.35 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCCChhh----------HHHHHHHHHhhccCcchhh--HHHHHHHHHHHHHHHhhhhCCCccccC
Q psy15211 5 ILLESEISEAIMGFSSNE----------QFFLDYTLTNLSKNKSQFI--KNALLSVSIAIAKASSNELGLPLYRYI 68 (68)
Q Consensus 5 ~~in~~i~p~L~g~~~~~----------q~~iD~~L~~ld~nks~lG--ana~~AvSiA~~~a~A~~~~~PLy~~l 68 (68)
..+.+.++|.|+|.++.+ .+.+-+.|.... ..++-| ..|+.|++||+-++.++..|+|||++|
T Consensus 60 ~~~~~~~~~~lig~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~A~aaiDiAlWDl~gK~~g~Pl~~LL 134 (140)
T d1tzza2 60 GLIRERFASRILEADPKKLLNEAGDNLDPDKVWAAMMINE-KPGGHGERSVAVGTIDMAVWDAVAKIAGKPLFRLL 134 (140)
T ss_dssp HHHHHTHHHHHHTSCGGGSBCTTSSSBCHHHHHHHHTTTC-CSCCCSHHHHHHHHHHHHHHHHHHHHHTSBHHHHH
T ss_pred HHHHHHHHHHHhcccHhhHhhhcccccChHHHHHHHHhhc-ccCCCchhHHHHHHHHHHHHHHHHHHcCCcHHHHh
Confidence 456778999999998754 344444443322 122222 348999999999999999999999975
>d1kcza2 d.54.1.1 (A:1-160) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: beta-Methylaspartase
species: Clostridium tetanomorphum [TaxId: 1553]
Probab=96.43 E-value=0.0036 Score=39.36 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGL 62 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~ 62 (68)
+..+++.|+|.|+|.|++..++.=..+.++-.+-.++---.--+||.|+.+|.|+..+.
T Consensus 90 i~~~e~~v~p~L~g~d~~~Fr~~a~~~d~~~~~g~~LHtAiRYGvSQALL~A~A~a~r~ 148 (160)
T d1kcza2 90 IPVIEKEIAPKLIGREITNFKPMAEEFDKMTVNGNRLHTAIRYGITQAILDAVAKTRKV 148 (160)
T ss_dssp HHHHHHHTHHHHTTCBCCCHHHHHHHHHHCEETTEECCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhhhHHHhCCcHHHHHHHHHHHhhcccCCcchhHHHHHhHHHHHHHHHHHHcCC
Confidence 45689999999999999999888777776543334455557789999999999998764
>d1kkoa2 d.54.1.1 (A:1-160) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Enolase N-terminal domain-like
superfamily: Enolase N-terminal domain-like
family: Enolase N-terminal domain-like
domain: beta-Methylaspartase
species: Citrobacter amalonaticus [TaxId: 35703]
Probab=96.15 E-value=0.0047 Score=38.83 Aligned_cols=59 Identities=14% Similarity=0.068 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHhhhhCC
Q psy15211 4 DILLESEISEAIMGFSSNEQFFLDYTLTNLSKNKSQFIKNALLSVSIAIAKASSNELGL 62 (68)
Q Consensus 4 v~~in~~i~p~L~g~~~~~q~~iD~~L~~ld~nks~lGana~~AvSiA~~~a~A~~~~~ 62 (68)
+..+++.|+|.|+|.|++..++.=+.+..+--+-.++---.--+||.|+.+|.|+..+.
T Consensus 90 i~~~e~~v~p~L~g~d~~~Fr~~A~~~d~~~~~g~~LHtAiRYGvSQALL~A~A~a~r~ 148 (160)
T d1kkoa2 90 IPFLNDHIKPLLEGRDVDAFLPNARFFDKLRIDGNLLHTAVRYGLSQALLDATALASGR 148 (160)
T ss_dssp HHHHHHHTHHHHTTCBCSCSHHHHHHHHHCEETTEECCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhhHHHhCCcHHHHHHHHHHHhhcccCCCchhHHHHHhHHHHHHHHHHHHcCc
Confidence 45689999999999999998887777665532334455556789999999999998765
